Pecora	ANCESTRAL SPECIES	2	ENSGT00730000111580 #8	ENSGT00940000165404	ENSGT00940000163905	ENSGT00940000163498 #9	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a ##13	ENSGT00940000154467.a.h.a #14	ENSGT00940000154467.b.a #15	ENSGT00940000154467.a.h.b #16	ENSGT00940000154467.a.i #17	ENSGT00940000163983 #18	ENSGT00940000162966 #19	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #24	ENSGT00940000161937 #25	ENSGT00940000163537	ENSGT00940000161521 #26	ENSGT00940000162157 #30	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #36	ENSGT00940000162698 #37	ENSGT00940000160649	ENSGT00390000000698
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000165404	ENSGT00940000163905	ENSGT00940000163498 #9	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.a.h.b #16	ENSGT00940000154467.a.h.a #14	ENSGT00940000154467.b.a #15	ENSGT00940000154467.a.i.a.a ##13	ENSGT00940000154467.b.b.a ##13	ENSGT00940000154467.a.i.b #17	ENSGT00940000163983 #18	ENSGT00940000162966 #19	ENSGT00940000154172.z #21	ENSGT00940000154197.a.a ##22	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #24	ENSGT00940000161937 #25	ENSGT00940000163537	ENSGT00940000161521 #26	ENSGT00940000162157 #30	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183065.B #36	ENSGT00940000162698 #37	ENSGT00940000160649
Bovidae	ANCESTRAL SPECIES	1	ENSGT00730000111554 #7	ENSGT00730000111580 #8	ENSGT00940000165404	ENSGT00940000163905	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a ##13	ENSGT00940000154467.a.h.a.a #14	ENSGT00940000154467.a.h.a.b ##13	ENSGT00940000154467.b.a #15	ENSGT00940000154467.a.h.b #16	ENSGT00940000154467.a.i.b #17	ENSGT00940000163983 #18	ENSGT00940000162966 #19	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #24	ENSGT00940000161937 #25	ENSGT00940000163537	ENSGT00940000161521 #26	ENSGT00940000162157 #30	ENSGT00940000159364 #27	ENSGT00950000186450 #28	ENSGT00940000161581 #29	ENSGT00390000008281	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183065.B #36	ENSGT00940000162698 #37
Bovinae	ANCESTRAL SPECIES	1	ENSGT00950000183312	ENSGT00730000111554 #7	ENSGT00730000111580 #8	ENSGT00940000165404	ENSGT00940000163905	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a ##13	ENSGT00940000154467.a.h.a.a #14	ENSGT00940000154467.b.a #15	ENSGT00940000154467.a.h.b #16	ENSGT00940000154467.a.i.b #17	ENSGT00940000163983 #18	ENSGT00940000162966 #19	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #24	ENSGT00940000161937 #25	ENSGT00940000163537	ENSGT00940000161521 #26	ENSGT00940000162157 #30	ENSGT00940000159364 #27	ENSGT00950000186450 #28	ENSGT00940000161581 #29	ENSGT00390000008281	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183065.B #36	ENSGT00940000154489.B
Bos	ANCESTRAL SPECIES		ENSGT00730000111554 #7	ENSGT00730000111580 #8	ENSGT00940000163498 #9	ENSGT00970000197102 #10	ENSGT01050000245143 #11	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a ##13	ENSGT00940000154467.a.h.a.a #14	ENSGT00940000154467.b.a #15	ENSGT00940000154467.a.h.b #16	ENSGT00940000154467.a.i.b #17	ENSGT00940000163983 #18	ENSGT00940000162966 #19	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #24	ENSGT00940000161937 #25	ENSGT00940000163537	ENSGT00940000161521 #26	ENSGT00940000162157 #30	ENSGT00940000159364 #27	ENSGT00950000186450 #28	ENSGT00940000161581 #29	ENSGT00390000008281	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183065.B #36	ENSGT00940000154489.B
Bos_a	ANCESTRAL SPECIES	47	ENSGT00730000111554 #7	ENSGT00730000111580 #8	ENSGT00940000163498 #9	ENSGT00970000197102 #10	ENSGT01050000245143 #11	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a ##13	ENSGT00940000154467.a.h.a.a #14	ENSGT00940000154467.b.a #15	ENSGT00940000154467.a.h.b #16	ENSGT00940000154467.a.i.b #17	ENSGT00940000163983 #18	ENSGT00940000162966 #19	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #24	ENSGT00940000161937 #25	ENSGT00940000161521 #26	ENSGT00940000162157 #30	ENSGT00940000159364 #27	ENSGT00950000186450 #28	ENSGT00940000161581 #29	ENSGT00390000008281	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #36	ENSGT00940000154489.B	ENSGT00940000162698 #37	ENSGT00940000160649
Domestic yak	MODERN SPECIES	22	KPRP (ENSBGRG00000003208) #7	C1orf68 (ENSBGRG00000003205) #8	ENSBGRG00000003177 #9	ENSBGRG00000003168 #10	ENSBGRG00000003159 #11	ENSBGRG00000003154 #12	ENSBGRG00000003149 #13	ENSBGRG00000003128 #14	ENSBGRG00000003103 #15	ENSBGRG00000003087 #16	ENSBGRG00000003077 #17	ENSBGRG00000003029 #18	ENSBGRG00000003014 #19	ENSBGRG00000002999 #20	ENSBGRG00000002990 #21	S100A10 (ENSBGRG00000002962) #22	ENSBGRG00000002950 #23	THEM4 (ENSBGRG00000002939) #24	THEM5 (ENSBGRG00000002906) #25	RORC (ENSBGRG00000002783) #26	TDRKH (ENSBGRG00000002702) #27	ENSBGRG00000002678 #28	ENSBGRG00000002657 #29	ENSBGRG00000002612 #30	RIIAD1 (ENSBGRG00000002574) #31	CELF3 (ENSBGRG00000002490) #32	SNX27 (ENSBGRG00000002390) #33	ENSBGRG00000002366 #34	ENSBGRG00000002354 #35	TUFT1 (ENSBGRG00000002325) #36	ENSBGRG00000002259 #37
Wild yak	MODERN SPECIES	688	ENSBMUG00000024947	C1orf68 (ENSBMUG00000024927) #8	LCE3B (ENSBMUG00000024922)	ENSBMUG00000024916	ENSBMUG00000024912 #11	ENSBMUG00000024905 #12	ENSBMUG00000024887 #13	ENSBMUG00000024880 ##13	ENSBMUG00000024877 #14	ENSBMUG00000024872 #15	ENSBMUG00000024867 #16	RPTN (ENSBMUG00000024866) #17	ENSBMUG00000024861 #18	TCHHL1 (ENSBMUG00000024857) #19	ENSBMUG00000024843 #21	S100A10 (ENSBMUG00000024837) #22	THEM4 (ENSBMUG00000024826) #24	THEM5 (ENSBMUG00000024818) #25	RORC (ENSBMUG00000024807) #26	LINGO4 (ENSBMUG00000024776) #30	TDRKH (ENSBMUG00000024766) #27	ENSBMUG00000024752 #28	OAZ3 (ENSBMUG00000024748) #29	MRPL9 (ENSBMUG00000024735)	RIIAD1 (ENSBMUG00000024721) #31	CELF3 (ENSBMUG00000024707) #32	SNX27 (ENSBMUG00000024681) #33	TUFT1 (ENSBMUG00000024610) #36	CGN (ENSBMUG00000024577)	POGZ (ENSBMUG00000024528)	PSMB4 (ENSBMUG00000024466)
Bos_b	ANCESTRAL SPECIES	1	ENSGT00730000111580 #8	ENSGT00940000165404	ENSGT00940000163905	ENSGT00970000197102 #10	ENSGT01050000245143 #11	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.a.h.a.b ##13	ENSGT00940000154467.b.a #15	ENSGT00940000154467.a.i.a.a ##13	ENSGT00940000154467.a.h.b #16	ENSGT00940000154467.a.i.b #17	ENSGT00940000163983 #18	ENSGT00940000162966 #19	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #24	ENSGT00940000161937 #25	ENSGT00940000163537	ENSGT00940000161521 #26	ENSGT00940000162157 #30	ENSGT00940000159364 #27	ENSGT00950000186450 #28	ENSGT00940000161581 #29	ENSGT00390000008281	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183065.B #36	ENSGT00940000154539.b.u #35
Cow	MODERN SPECIES	22	ENSBTAG00000053743	ENSBTAG00000054620	C3H1orf68 (ENSBTAG00000046138) #8	ENSBTAG00000050431	CRCT1 (ENSBTAG00000008700) #10	ENSBTAG00000032446	CRNN (ENSBTAG00000054069) #12	ENSBTAG00000054258 #13	ENSBTAG00000054333 ##13	ENSBTAG00000048997 #15	ENSBTAG00000039357 #16	RPTN (ENSBTAG00000039260) #17	TCHH (ENSBTAG00000053103)	TCHHL1 (ENSBTAG00000015854) #19	S100A11 (ENSBTAG00000015145) #21	S100A10 (ENSBTAG00000015147) #22	THEM4 (ENSBTAG00000004772) #24	ENSBTAG00000051270 #23	THEM5 (ENSBTAG00000000690) #25	C2CD4D (ENSBTAG00000047528)	RORC (ENSBTAG00000017405) #26	LINGO4 (ENSBTAG00000040596) #30	TDRKH (ENSBTAG00000021594) #27	ENSBTAG00000050352 #28	OAZ3 (ENSBTAG00000021591) #29	MRPL9 (ENSBTAG00000000797)	CELF3 (ENSBTAG00000019131) #32	SNX27 (ENSBTAG00000001942) #33	ENSBTAG00000054946	TUFT1 (ENSBTAG00000017566) #36	ENSBTAG00000024407 #35
Hybrid Bos Indicus	MODERN SPECIES	22	LCE1A (ENSBIXG00005007992)	C1orf68 (ENSBIXG00005007957) #8	LCE3B (ENSBIXG00005000042)	ENSBIXG00005007950	ENSBIXG00005007945 #10	ENSBIXG00005007940 #11	ENSBIXG00005007930 #12	ENSBIXG00005005284 #13	ENSBIXG00005029242 #13	ENSBIXG00005001535 #15	ENSBIXG00005001542 ##13	ENSBIXG00005001545 #17	ENSBIXG00005001555 #18	TCHHL1 (ENSBIXG00005001560) #19	ENSBIXG00005005274 #21	S100A10 (ENSBIXG00005029229) #22	THEM4 (ENSBIXG00005005256) #24	ENSBIXG00005001633 ##23	THEM5 (ENSBIXG00005029208) #25	C2CD4D (ENSBIXG00005001695)	RORC (ENSBIXG00005001718) #26	LINGO4 (ENSBIXG00005001805) #30	TDRKH (ENSBIXG00005029148) #27	ENSBIXG00005005150 #28	OAZ3 (ENSBIXG00005001942) #29	MRPL9 (ENSBIXG00005005138)	RIIAD1 (ENSBIXG00005001997) #31	CELF3 (ENSBIXG00005005120) #32	SNX27 (ENSBIXG00005005088) #33	ENSBIXG00005005039	TUFT1 (ENSBIXG00005028855) #36
American bison	MODERN SPECIES	3295	ENSBBBG00000003062	ENSBBBG00000009107	SPRR4 (ENSBBBG00000013960)	ENSBBBG00000003052	ENSBBBG00000013950	KPRP (ENSBBBG00000013941) #7	C1orf68 (ENSBBBG00000013938) #8	LCE3B (ENSBBBG00000003036)	ENSBBBG00000013936	ENSBBBG00000013932 #12	ENSBBBG00000003027 #13	ENSBBBG00000002896 #16	ENSBBBG00000013898 #18	TCHHL1 (ENSBBBG00000013893) #19	ENSBBBG00000013884 #21	S100A10 (ENSBBBG00000013878) #22	THEM4 (ENSBBBG00000002992) #24	THEM5 (ENSBBBG00000002989) #25	RORC (ENSBBBG00000013856) #26	LINGO4 (ENSBBBG00000002969) #30	TDRKH (ENSBBBG00000013832) #27	ENSBBBG00000013787 #28	OAZ3 (ENSBBBG00000013776) #29	MRPL9 (ENSBBBG00000002933)	RIIAD1 (ENSBBBG00000013726) #31	CELF3 (ENSBBBG00000002911) #32	SNX27 (ENSBBBG00000013687) #33	ENSBBBG00000013643	TUFT1 (ENSBBBG00000013630) #36	ENSBBBG00000013560 #35	CGN (ENSBBBG00000013551)
Caprinae	ANCESTRAL SPECIES	2	ENSGT00780000122937	ENSGT00940000166289	ENSGT00950000183312	ENSGT00730000111580 #8	ENSGT00940000165404	ENSGT00940000163905	ENSGT00940000163498 #9	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.a.h.b #16	ENSGT00940000154467.b.b.a ##13	ENSGT00940000154467.a.i.b #17	ENSGT00940000164620	ENSGT00940000162966 #19	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #24	ENSGT00940000161937 #25	ENSGT00940000163537	ENSGT00940000161521 #26	ENSGT00940000162157 #30	ENSGT00940000159364 #27	ENSGT00950000186450 #28	ENSGT00940000161581 #29	ENSGT00390000008281	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #36	ENSGT00940000162698 #37	ENSGT00940000160649
Goat	MODERN SPECIES	22	ENSCHIG00000013514	SPRR4 (ENSCHIG00000013052)	ENSCHIG00000024891	ENSCHIG00000007657	ENSCHIG00000017937	KPRP (ENSCHIG00000023870) #7	C1orf68 (ENSCHIG00000011620) #8	LCE3B (ENSCHIG00000012019)	CRNN (ENSCHIG00000025673) #12	ENSCHIG00000020535 #13	ENSCHIG00000026233 #16	ENSCHIG00000018492 #17	ENSCHIG00000005102	TCHHL1 (ENSCHIG00000010186) #19	S100A11 (ENSCHIG00000009234) #21	S100A10 (ENSCHIG00000017889) #22	ENSCHIG00000024791	ENSCHIG00000023394	THEM4 (ENSCHIG00000015398) #24	THEM5 (ENSCHIG00000021133) #25	C2CD4D (ENSCHIG00000010717)	RORC (ENSCHIG00000005408) #26	LINGO4 (ENSCHIG00000010031) #30	TDRKH (ENSCHIG00000025326) #27	ENSCHIG00000018414 #28	OAZ3 (ENSCHIG00000024499) #29	MRPL9 (ENSCHIG00000011797)	RIIAD1 (ENSCHIG00000025840) #31	CELF3 (ENSCHIG00000025847) #32	ENSCHIG00000012675	SNX27 (ENSCHIG00000021069) #33
Rambouillet Sheep	MODERN SPECIES		LCE1A (ENSOARG00020000260)	ENSOARG00020000228	C1orf68 (ENSOARG00020000210) #8	LCE3B (ENSOARG00020000187)	ENSOARG00020000176	ENSOARG00020000162 #9	ENSOARG00020000140 #14	ENSOARG00020000109 #14	ENSOARG00020000102 ##13	ENSOARG00020018940 #15	ENSOARG00020018927 ##13	ENSOARG00020018856 #17	ENSOARG00020018824	TCHHL1 (ENSOARG00020018793) #19	S100A11 (ENSOARG00020018738) #21	S100A10 (ENSOARG00020018696) #22	THEM4 (ENSOARG00020018617) #24	THEM5 (ENSOARG00020018565) #25	C2CD4D (ENSOARG00020018535)	RORC (ENSOARG00020018249) #26	LINGO4 (ENSOARG00020018213) #30	TDRKH (ENSOARG00020018147) #27	OAZ3 (ENSOARG00020018023) #29	MRPL9 (ENSOARG00020017917)	RIIAD1 (ENSOARG00020017857) #31	CELF3 (ENSOARG00020017622) #32	SNX27 (ENSOARG00020016963) #33	TUFT1 (ENSOARG00020016156) #36	ENSOARG00020016001 #37	POGZ (ENSOARG00020015459)	PSMB4 (ENSOARG00020015380)
Siberian musk deer	MODERN SPECIES	1243				ENSMMSG00000020455	ENSMMSG00000020485	ENSMMSG00000020597	ENSMMSG00000020612	ENSMMSG00000020304	YEATS4 (ENSMMSG00000020324)	FRS2 (ENSMMSG00000020358)	CCT2 (ENSMMSG00000020398)	LRRC10 (ENSMMSG00000020422)	BEST3 (ENSMMSG00000020449)	RAB3IP (ENSMMSG00000020870)	MYRFL (ENSMMSG00000021224)	ENSMMSG00000021405 #22	CNOT2 (ENSMMSG00000021430)	KCNMB4 (ENSMMSG00000021522)	ENSMMSG00000021535	PTPRB (ENSMMSG00000021623)	PTPRR (ENSMMSG00000022063)	ENSMMSG00000022228
Yarkand deer	MODERN SPECIES	12	ENSCHYG00000019176	ENSCHYG00000019223	KPRP (ENSCHYG00000019359) #7	LCE3B (ENSCHYG00000019507)	ENSCHYG00000019532	ENSCHYG00000019568 #9	ENSCHYG00000005111	ENSCHYG00000005119	LCE5A (ENSCHYG00000005138)	CRNN (ENSCHYG00000005156) #12	ENSCHYG00000005180 #13	ENSCHYG00000005225 ##13	ENSCHYG00000005265	TCHHL1 (ENSCHYG00000005278) #19	ENSCHYG00000005300 #21	S100A10 (ENSCHYG00000005318) #22	THEM4 (ENSCHYG00000005358) #24	THEM5 (ENSCHYG00000005402) #25	C2CD4D (ENSCHYG00000005436)	RORC (ENSCHYG00000005468) #26	LINGO4 (ENSCHYG00000005555) #30	TDRKH (ENSCHYG00000005624) #27	OAZ3 (ENSCHYG00000005747) #29	MRPL9 (ENSCHYG00000005891)	RIIAD1 (ENSCHYG00000006033) #31	CELF3 (ENSCHYG00000006085) #32	SNX27 (ENSCHYG00000006199) #33	TUFT1 (ENSCHYG00000006362) #36	ENSCHYG00000006682 #37	POGZ (ENSCHYG00000006826)	PSMB4 (ENSCHYG00000006978)