Bovinae	ANCESTRAL SPECIES	1	ENSGT00950000183312	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a.h.a.a #15	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00950000186450 #28	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183065.B #34	ENSGT00940000154489.B #35
Bos	ANCESTRAL SPECIES		ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000163498	ENSGT00970000197102	ENSGT01050000245143 #11	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a.h.a.a #15	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00950000186450 #28	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183065.B #34	ENSGT00940000154489.B #35
Bos_a	ANCESTRAL SPECIES	47	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000163498	ENSGT00970000197102	ENSGT01050000245143 #11	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a.h.a.a #15	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00950000186450 #28	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000154489.B #35	ENSGT00940000162698	ENSGT00940000160649 #36
Wild yak	MODERN SPECIES	688	ENSBMUG00000024947 #7	C1orf68 (ENSBMUG00000024927) #8	LCE3B (ENSBMUG00000024922) #9	ENSBMUG00000024916 #10	ENSBMUG00000024912 #11	ENSBMUG00000024905 #12	ENSBMUG00000024887 #13	ENSBMUG00000024880 #14	ENSBMUG00000024877 #15	ENSBMUG00000024872 #16	ENSBMUG00000024867 #17	RPTN (ENSBMUG00000024866) #18	ENSBMUG00000024861 #19	TCHHL1 (ENSBMUG00000024857) #20	ENSBMUG00000024843 #21	S100A10 (ENSBMUG00000024837) #22	THEM4 (ENSBMUG00000024826) #23	THEM5 (ENSBMUG00000024818) #24	RORC (ENSBMUG00000024807) #25	LINGO4 (ENSBMUG00000024776) #26	TDRKH (ENSBMUG00000024766) #27	ENSBMUG00000024752 #28	OAZ3 (ENSBMUG00000024748) #29	MRPL9 (ENSBMUG00000024735) #30	RIIAD1 (ENSBMUG00000024721) #31	CELF3 (ENSBMUG00000024707) #32	SNX27 (ENSBMUG00000024681) #33	TUFT1 (ENSBMUG00000024610) #34	CGN (ENSBMUG00000024577) #35	POGZ (ENSBMUG00000024528) #36	PSMB4 (ENSBMUG00000024466) #37
Domestic yak	MODERN SPECIES	22	KPRP (ENSBGRG00000003208)	C1orf68 (ENSBGRG00000003205) #8	ENSBGRG00000003177	ENSBGRG00000003168	ENSBGRG00000003159 #11	ENSBGRG00000003154 #12	ENSBGRG00000003149 #13	ENSBGRG00000003128 #15	ENSBGRG00000003103 #16	ENSBGRG00000003087 #17	ENSBGRG00000003077 #18	ENSBGRG00000003029 #19	ENSBGRG00000003014 #20	ENSBGRG00000002999	ENSBGRG00000002990 #21	S100A10 (ENSBGRG00000002962) #22	ENSBGRG00000002950	THEM4 (ENSBGRG00000002939) #23	THEM5 (ENSBGRG00000002906) #24	RORC (ENSBGRG00000002783) #25	TDRKH (ENSBGRG00000002702) #27	ENSBGRG00000002678 #28	ENSBGRG00000002657 #29	ENSBGRG00000002612 #26	RIIAD1 (ENSBGRG00000002574) #31	CELF3 (ENSBGRG00000002490) #32	SNX27 (ENSBGRG00000002390) #33	ENSBGRG00000002366	ENSBGRG00000002354	TUFT1 (ENSBGRG00000002325) #34	ENSBGRG00000002259
Bos_b	ANCESTRAL SPECIES	1	ENSGT00730000111580 #8	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00970000197102	ENSGT01050000245143 #11	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.a.h.a.b ##13	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.i.a.a ##13	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00950000186450 #28	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183065.B #34	ENSGT00940000154539.b.u
Cow	MODERN SPECIES	22	ENSBTAG00000053743	ENSBTAG00000054620	C3H1orf68 (ENSBTAG00000046138) #8	ENSBTAG00000050431 #10	CRCT1 (ENSBTAG00000008700)	ENSBTAG00000032446	CRNN (ENSBTAG00000054069) #12	ENSBTAG00000054258 #13	ENSBTAG00000054333 ##13	ENSBTAG00000048997 #16	ENSBTAG00000039357 #17	RPTN (ENSBTAG00000039260) #18	TCHH (ENSBTAG00000053103)	TCHHL1 (ENSBTAG00000015854) #20	S100A11 (ENSBTAG00000015145) #21	S100A10 (ENSBTAG00000015147) #22	THEM4 (ENSBTAG00000004772) #23	ENSBTAG00000051270	THEM5 (ENSBTAG00000000690) #24	C2CD4D (ENSBTAG00000047528)	RORC (ENSBTAG00000017405) #25	LINGO4 (ENSBTAG00000040596) #26	TDRKH (ENSBTAG00000021594) #27	ENSBTAG00000050352 #28	OAZ3 (ENSBTAG00000021591) #29	MRPL9 (ENSBTAG00000000797) #30	CELF3 (ENSBTAG00000019131) #32	SNX27 (ENSBTAG00000001942) #33	ENSBTAG00000054946	TUFT1 (ENSBTAG00000017566) #34	ENSBTAG00000024407
Hybrid Bos Indicus	MODERN SPECIES	22	LCE1A (ENSBIXG00005007992)	C1orf68 (ENSBIXG00005007957) #8	LCE3B (ENSBIXG00005000042) #9	ENSBIXG00005007950 #10	ENSBIXG00005007945	ENSBIXG00005007940 #11	ENSBIXG00005007930 #12	ENSBIXG00005005284 #13	ENSBIXG00005029242 #13	ENSBIXG00005001535 #16	ENSBIXG00005001542 ##13	ENSBIXG00005001545 #18	ENSBIXG00005001555 #19	TCHHL1 (ENSBIXG00005001560) #20	ENSBIXG00005005274 #21	S100A10 (ENSBIXG00005029229) #22	THEM4 (ENSBIXG00005005256) #23	ENSBIXG00005001633	THEM5 (ENSBIXG00005029208) #24	C2CD4D (ENSBIXG00005001695)	RORC (ENSBIXG00005001718) #25	LINGO4 (ENSBIXG00005001805) #26	TDRKH (ENSBIXG00005029148) #27	ENSBIXG00005005150 #28	OAZ3 (ENSBIXG00005001942) #29	MRPL9 (ENSBIXG00005005138) #30	RIIAD1 (ENSBIXG00005001997) #31	CELF3 (ENSBIXG00005005120) #32	SNX27 (ENSBIXG00005005088) #33	ENSBIXG00005005039	TUFT1 (ENSBIXG00005028855) #34
American bison	MODERN SPECIES	3295	ENSBBBG00000003062	ENSBBBG00000009107	SPRR4 (ENSBBBG00000013960)	ENSBBBG00000003052	ENSBBBG00000013950 #7	KPRP (ENSBBBG00000013941)	C1orf68 (ENSBBBG00000013938) #8	LCE3B (ENSBBBG00000003036) #9	ENSBBBG00000013936 #10	ENSBBBG00000013932 #12	ENSBBBG00000003027 #13	ENSBBBG00000002896 #17	ENSBBBG00000013898 #19	TCHHL1 (ENSBBBG00000013893) #20	ENSBBBG00000013884 #21	S100A10 (ENSBBBG00000013878) #22	THEM4 (ENSBBBG00000002992) #23	THEM5 (ENSBBBG00000002989) #24	RORC (ENSBBBG00000013856) #25	LINGO4 (ENSBBBG00000002969) #26	TDRKH (ENSBBBG00000013832) #27	ENSBBBG00000013787 #28	OAZ3 (ENSBBBG00000013776) #29	MRPL9 (ENSBBBG00000002933) #30	RIIAD1 (ENSBBBG00000013726) #31	CELF3 (ENSBBBG00000002911) #32	SNX27 (ENSBBBG00000013687) #33	ENSBBBG00000013643	TUFT1 (ENSBBBG00000013630) #34	ENSBBBG00000013560	CGN (ENSBBBG00000013551) #35