Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00940000163498	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a.h.a #15	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00730000111580 #8	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00940000163498	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a.h.a #15	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00730000111580 #8	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00940000163498	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a.h.a #15	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Pecora	ANCESTRAL SPECIES	2	ENSGT00730000111580 #8	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00940000163498	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a.h.a #15	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00940000163498	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.h.a #15	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.i.a.a ##13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.a.a ##22	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36
Bovidae	ANCESTRAL SPECIES	1	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a.h.a.a #15	ENSGT00940000154467.a.h.a.b ##13	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00950000186450 #28	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183065.B #34	ENSGT00940000162698
Bovinae	ANCESTRAL SPECIES	1	ENSGT00950000183312	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a.h.a.a #15	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00950000186450 #28	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183065.B #34	ENSGT00940000154489.B #35
Bos	ANCESTRAL SPECIES		ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000163498	ENSGT00970000197102	ENSGT01050000245143 #11	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a.h.a.a #15	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00950000186450 #28	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183065.B #34	ENSGT00940000154489.B #35
Bos_a	ANCESTRAL SPECIES	47	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000163498	ENSGT00970000197102	ENSGT01050000245143 #11	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a.h.a.a #15	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00950000186450 #28	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000154489.B #35	ENSGT00940000162698	ENSGT00940000160649 #36
Wild yak	MODERN SPECIES	688	ENSBMUG00000024947 #7	C1orf68 (ENSBMUG00000024927) #8	LCE3B (ENSBMUG00000024922) #9	ENSBMUG00000024916 #10	ENSBMUG00000024912 #11	ENSBMUG00000024905 #12	ENSBMUG00000024887 #13	ENSBMUG00000024880 #14	ENSBMUG00000024877 #15	ENSBMUG00000024872 #16	ENSBMUG00000024867 #17	RPTN (ENSBMUG00000024866) #18	ENSBMUG00000024861 #19	TCHHL1 (ENSBMUG00000024857) #20	ENSBMUG00000024843 #21	S100A10 (ENSBMUG00000024837) #22	THEM4 (ENSBMUG00000024826) #23	THEM5 (ENSBMUG00000024818) #24	RORC (ENSBMUG00000024807) #25	LINGO4 (ENSBMUG00000024776) #26	TDRKH (ENSBMUG00000024766) #27	ENSBMUG00000024752 #28	OAZ3 (ENSBMUG00000024748) #29	MRPL9 (ENSBMUG00000024735) #30	RIIAD1 (ENSBMUG00000024721) #31	CELF3 (ENSBMUG00000024707) #32	SNX27 (ENSBMUG00000024681) #33	TUFT1 (ENSBMUG00000024610) #34	CGN (ENSBMUG00000024577) #35	POGZ (ENSBMUG00000024528) #36	PSMB4 (ENSBMUG00000024466) #37
Domestic yak	MODERN SPECIES	22	KPRP (ENSBGRG00000003208)	C1orf68 (ENSBGRG00000003205) #8	ENSBGRG00000003177	ENSBGRG00000003168	ENSBGRG00000003159 #11	ENSBGRG00000003154 #12	ENSBGRG00000003149 #13	ENSBGRG00000003128 #15	ENSBGRG00000003103 #16	ENSBGRG00000003087 #17	ENSBGRG00000003077 #18	ENSBGRG00000003029 #19	ENSBGRG00000003014 #20	ENSBGRG00000002999	ENSBGRG00000002990 #21	S100A10 (ENSBGRG00000002962) #22	ENSBGRG00000002950	THEM4 (ENSBGRG00000002939) #23	THEM5 (ENSBGRG00000002906) #24	RORC (ENSBGRG00000002783) #25	TDRKH (ENSBGRG00000002702) #27	ENSBGRG00000002678 #28	ENSBGRG00000002657 #29	ENSBGRG00000002612 #26	RIIAD1 (ENSBGRG00000002574) #31	CELF3 (ENSBGRG00000002490) #32	SNX27 (ENSBGRG00000002390) #33	ENSBGRG00000002366	ENSBGRG00000002354	TUFT1 (ENSBGRG00000002325) #34	ENSBGRG00000002259
Bos_b	ANCESTRAL SPECIES	1	ENSGT00730000111580 #8	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00970000197102	ENSGT01050000245143 #11	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.a.h.a.b ##13	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.i.a.a ##13	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00950000186450 #28	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183065.B #34	ENSGT00940000154539.b.u
Cow	MODERN SPECIES	22	ENSBTAG00000053743	ENSBTAG00000054620	C3H1orf68 (ENSBTAG00000046138) #8	ENSBTAG00000050431 #10	CRCT1 (ENSBTAG00000008700)	ENSBTAG00000032446	CRNN (ENSBTAG00000054069) #12	ENSBTAG00000054258 #13	ENSBTAG00000054333 ##13	ENSBTAG00000048997 #16	ENSBTAG00000039357 #17	RPTN (ENSBTAG00000039260) #18	TCHH (ENSBTAG00000053103)	TCHHL1 (ENSBTAG00000015854) #20	S100A11 (ENSBTAG00000015145) #21	S100A10 (ENSBTAG00000015147) #22	THEM4 (ENSBTAG00000004772) #23	ENSBTAG00000051270	THEM5 (ENSBTAG00000000690) #24	C2CD4D (ENSBTAG00000047528)	RORC (ENSBTAG00000017405) #25	LINGO4 (ENSBTAG00000040596) #26	TDRKH (ENSBTAG00000021594) #27	ENSBTAG00000050352 #28	OAZ3 (ENSBTAG00000021591) #29	MRPL9 (ENSBTAG00000000797) #30	CELF3 (ENSBTAG00000019131) #32	SNX27 (ENSBTAG00000001942) #33	ENSBTAG00000054946	TUFT1 (ENSBTAG00000017566) #34	ENSBTAG00000024407
Hybrid Bos Indicus	MODERN SPECIES	22	LCE1A (ENSBIXG00005007992)	C1orf68 (ENSBIXG00005007957) #8	LCE3B (ENSBIXG00005000042) #9	ENSBIXG00005007950 #10	ENSBIXG00005007945	ENSBIXG00005007940 #11	ENSBIXG00005007930 #12	ENSBIXG00005005284 #13	ENSBIXG00005029242 #13	ENSBIXG00005001535 #16	ENSBIXG00005001542 ##13	ENSBIXG00005001545 #18	ENSBIXG00005001555 #19	TCHHL1 (ENSBIXG00005001560) #20	ENSBIXG00005005274 #21	S100A10 (ENSBIXG00005029229) #22	THEM4 (ENSBIXG00005005256) #23	ENSBIXG00005001633	THEM5 (ENSBIXG00005029208) #24	C2CD4D (ENSBIXG00005001695)	RORC (ENSBIXG00005001718) #25	LINGO4 (ENSBIXG00005001805) #26	TDRKH (ENSBIXG00005029148) #27	ENSBIXG00005005150 #28	OAZ3 (ENSBIXG00005001942) #29	MRPL9 (ENSBIXG00005005138) #30	RIIAD1 (ENSBIXG00005001997) #31	CELF3 (ENSBIXG00005005120) #32	SNX27 (ENSBIXG00005005088) #33	ENSBIXG00005005039	TUFT1 (ENSBIXG00005028855) #34
American bison	MODERN SPECIES	3295	ENSBBBG00000003062	ENSBBBG00000009107	SPRR4 (ENSBBBG00000013960)	ENSBBBG00000003052	ENSBBBG00000013950 #7	KPRP (ENSBBBG00000013941)	C1orf68 (ENSBBBG00000013938) #8	LCE3B (ENSBBBG00000003036) #9	ENSBBBG00000013936 #10	ENSBBBG00000013932 #12	ENSBBBG00000003027 #13	ENSBBBG00000002896 #17	ENSBBBG00000013898 #19	TCHHL1 (ENSBBBG00000013893) #20	ENSBBBG00000013884 #21	S100A10 (ENSBBBG00000013878) #22	THEM4 (ENSBBBG00000002992) #23	THEM5 (ENSBBBG00000002989) #24	RORC (ENSBBBG00000013856) #25	LINGO4 (ENSBBBG00000002969) #26	TDRKH (ENSBBBG00000013832) #27	ENSBBBG00000013787 #28	OAZ3 (ENSBBBG00000013776) #29	MRPL9 (ENSBBBG00000002933) #30	RIIAD1 (ENSBBBG00000013726) #31	CELF3 (ENSBBBG00000002911) #32	SNX27 (ENSBBBG00000013687) #33	ENSBBBG00000013643	TUFT1 (ENSBBBG00000013630) #34	ENSBBBG00000013560	CGN (ENSBBBG00000013551) #35
Caprinae	ANCESTRAL SPECIES	2	ENSGT00780000122937	ENSGT00940000166289	ENSGT00950000183312	ENSGT00730000111580 #8	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00940000163498	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a.i.b #18	ENSGT00940000164620	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00950000186450 #28	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36
Goat	MODERN SPECIES	22	ENSCHIG00000013514	SPRR4 (ENSCHIG00000013052)	ENSCHIG00000024891	ENSCHIG00000007657 #7	ENSCHIG00000017937	KPRP (ENSCHIG00000023870)	C1orf68 (ENSCHIG00000011620) #8	LCE3B (ENSCHIG00000012019) #9	CRNN (ENSCHIG00000025673) #12	ENSCHIG00000020535 #13	ENSCHIG00000026233 #17	ENSCHIG00000018492 #18	ENSCHIG00000005102	TCHHL1 (ENSCHIG00000010186) #20	S100A11 (ENSCHIG00000009234) #21	S100A10 (ENSCHIG00000017889) #22	ENSCHIG00000024791	ENSCHIG00000023394	THEM4 (ENSCHIG00000015398) #23	THEM5 (ENSCHIG00000021133) #24	C2CD4D (ENSCHIG00000010717)	RORC (ENSCHIG00000005408) #25	LINGO4 (ENSCHIG00000010031) #26	TDRKH (ENSCHIG00000025326) #27	ENSCHIG00000018414 #28	OAZ3 (ENSCHIG00000024499) #29	MRPL9 (ENSCHIG00000011797) #30	RIIAD1 (ENSCHIG00000025840) #31	CELF3 (ENSCHIG00000025847) #32	ENSCHIG00000012675	SNX27 (ENSCHIG00000021069) #33
Rambouillet Sheep	MODERN SPECIES		LCE1A (ENSOARG00020000260)	ENSOARG00020000228	C1orf68 (ENSOARG00020000210) #8	LCE3B (ENSOARG00020000187) #9	ENSOARG00020000176 #10	ENSOARG00020000162	ENSOARG00020000140 #15	ENSOARG00020000109 #15	ENSOARG00020000102 ##13	ENSOARG00020018940 #16	ENSOARG00020018927 #14	ENSOARG00020018856 #18	ENSOARG00020018824	TCHHL1 (ENSOARG00020018793) #20	S100A11 (ENSOARG00020018738) #21	S100A10 (ENSOARG00020018696) #22	THEM4 (ENSOARG00020018617) #23	THEM5 (ENSOARG00020018565) #24	C2CD4D (ENSOARG00020018535)	RORC (ENSOARG00020018249) #25	LINGO4 (ENSOARG00020018213) #26	TDRKH (ENSOARG00020018147) #27	OAZ3 (ENSOARG00020018023) #29	MRPL9 (ENSOARG00020017917) #30	RIIAD1 (ENSOARG00020017857) #31	CELF3 (ENSOARG00020017622) #32	SNX27 (ENSOARG00020016963) #33	TUFT1 (ENSOARG00020016156) #34	ENSOARG00020016001	POGZ (ENSOARG00020015459) #36	PSMB4 (ENSOARG00020015380) #37
Siberian musk deer	MODERN SPECIES	1243				ENSMMSG00000020455	ENSMMSG00000020485	ENSMMSG00000020597	ENSMMSG00000020612	ENSMMSG00000020304	YEATS4 (ENSMMSG00000020324)	FRS2 (ENSMMSG00000020358)	CCT2 (ENSMMSG00000020398)	LRRC10 (ENSMMSG00000020422)	BEST3 (ENSMMSG00000020449)	RAB3IP (ENSMMSG00000020870)	MYRFL (ENSMMSG00000021224)	ENSMMSG00000021405 #22	CNOT2 (ENSMMSG00000021430)	KCNMB4 (ENSMMSG00000021522)	ENSMMSG00000021535	PTPRB (ENSMMSG00000021623)	PTPRR (ENSMMSG00000022063)	ENSMMSG00000022228
Yarkand deer	MODERN SPECIES	12	ENSCHYG00000019176	ENSCHYG00000019223	KPRP (ENSCHYG00000019359)	LCE3B (ENSCHYG00000019507) #9	ENSCHYG00000019532 #10	ENSCHYG00000019568	ENSCHYG00000005111	ENSCHYG00000005119	LCE5A (ENSCHYG00000005138)	CRNN (ENSCHYG00000005156) #12	ENSCHYG00000005180 #13	ENSCHYG00000005225 #14	ENSCHYG00000005265	TCHHL1 (ENSCHYG00000005278) #20	ENSCHYG00000005300 #21	S100A10 (ENSCHYG00000005318) #22	THEM4 (ENSCHYG00000005358) #23	THEM5 (ENSCHYG00000005402) #24	C2CD4D (ENSCHYG00000005436)	RORC (ENSCHYG00000005468) #25	LINGO4 (ENSCHYG00000005555) #26	TDRKH (ENSCHYG00000005624) #27	OAZ3 (ENSCHYG00000005747) #29	MRPL9 (ENSCHYG00000005891) #30	RIIAD1 (ENSCHYG00000006033) #31	CELF3 (ENSCHYG00000006085) #32	SNX27 (ENSCHYG00000006199) #33	TUFT1 (ENSCHYG00000006362) #34	ENSCHYG00000006682	POGZ (ENSCHYG00000006826) #36	PSMB4 (ENSCHYG00000006978) #37
Cetacea	ANCESTRAL SPECIES		ENSGT00940000160475	ENSGT00940000161854	ENSGT00940000161706	ENSGT00390000000920	ENSGT00940000163114	ENSGT00940000161959	ENSGT00940000161276.C	ENSGT00940000161986	ENSGT00940000161896	ENSGT00910000144329	ENSGT00940000162189	ENSGT00940000161606	ENSGT00940000162657	ENSGT00940000154467.a.h.a #15	ENSGT00940000154172.ab.a.b.a.b #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000161706	ENSGT00390000000920	ENSGT00940000163114	ENSGT00940000161959	ENSGT00940000161276.C	ENSGT00940000161986	ENSGT00940000161896	ENSGT00910000144329	ENSGT00940000162189	ENSGT00940000161606	ENSGT00940000162657	ENSGT00940000163248	ENSGT00940000164168	ENSGT00940000154467.a.h.a #15	ENSGT00940000154172.ab.a.b.a.b #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Sperm whale	MODERN SPECIES	15	NUP210L (ENSPCTG00005015439)	NPR1 (ENSPCTG00005015896)	INTS3 (ENSPCTG00005016167)	SLC27A3 (ENSPCTG00005016261)	GATAD2B (ENSPCTG00005016424)	ENSPCTG00005016521	S100A8 (ENSPCTG00005016557)	S100A12 (ENSPCTG00005016598)	S100A9 (ENSPCTG00005016642)	ENSPCTG00005016678	ENSPCTG00005016724	ENSPCTG00005016816	ENSPCTG00005016869	IVL (ENSPCTG00005017017)	S100A11 (ENSPCTG00005017173) #21	S100A10 (ENSPCTG00005017205) #22	THEM4 (ENSPCTG00005017250) #23	TUFT1 (ENSPCTG00005017363) #34	SNX27 (ENSPCTG00005017684) #33	CELF3 (ENSPCTG00005017933) #32	RIIAD1 (ENSPCTG00005018184) #31	MRPL9 (ENSPCTG00005018221) #30	OAZ3 (ENSPCTG00005018289) #29	TDRKH (ENSPCTG00005018417) #27	POGZ (ENSPCTG00005018518) #36	PSMB4 (ENSPCTG00005018741) #37	ENSPCTG00005018784	SELENBP1 (ENSPCTG00005018804)	RFX5 (ENSPCTG00005019016)	PI4KB (ENSPCTG00005019046)	PSMD4 (ENSPCTG00005019075)
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00940000160475	ENSGT00940000161854	ENSGT00940000161706	ENSGT00390000000920	ENSGT00940000163114	ENSGT00940000161959	ENSGT00940000161276.C	ENSGT00940000161986	ENSGT00940000161896	ENSGT00910000144329	ENSGT00940000162189	ENSGT00940000161606	ENSGT00940000162657	ENSGT00940000154467.a.h.a #15	ENSGT00940000154172.ab.a.b.a.b #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Dolphin	MODERN SPECIES	4431																S100A10 (ENSTTRG00000008647) #22
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000161854	ENSGT00940000161706	ENSGT00390000000920	ENSGT00940000163114	ENSGT00940000161959	ENSGT00940000161276.C	ENSGT00940000161986	ENSGT00940000161896	ENSGT00910000144329	ENSGT00940000162189	ENSGT00940000161606	ENSGT00940000162657	ENSGT00390000009110.`b.a	ENSGT00940000154467.a.h.a #15	ENSGT00940000154172.ab.a.b.a.b #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Vaquita	MODERN SPECIES		S100A16 (ENSPSNG00000001392)	ENSPSNG00000001377	S100A4 (ENSPSNG00000001347)	S100A5 (ENSPSNG00000001323)	S100A6 (ENSPSNG00000001310)	S100A8 (ENSPSNG00000001301)	S100A12 (ENSPSNG00000001285)	S100A9 (ENSPSNG00000001270)	ENSPSNG00000001247	ENSPSNG00000001227	ENSPSNG00000001169	ENSPSNG00000001131	ENSPSNG00000001116	ENSPSNG00000001017 #14	ENSPSNG00000000955 #21	ENSPSNG00000000934 #22	THEM4 (ENSPSNG00000000910) #23	THEM5 (ENSPSNG00000000888) #24	C2CD4D (ENSPSNG00000000879)	RORC (ENSPSNG00000000836) #25	LINGO4 (ENSPSNG00000000787) #26	TDRKH (ENSPSNG00000000758) #27	OAZ3 (ENSPSNG00000000680) #29	MRPL9 (ENSPSNG00000000615) #30	RIIAD1 (ENSPSNG00000000589) #31	CELF3 (ENSPSNG00000000542) #32	ENSPSNG00000000510	SNX27 (ENSPSNG00000000477) #33	TUFT1 (ENSPSNG00000000346) #34	ENSPSNG00000000227	POGZ (ENSPSNG00000000153) #36
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000161854	ENSGT00940000161706	ENSGT00390000000920	ENSGT00940000163114	ENSGT00940000161959	ENSGT00940000161276.C	ENSGT00940000161986	ENSGT00940000161896	ENSGT00910000144329	ENSGT00940000162189	ENSGT00940000161606	ENSGT00390000009110.`b.a	ENSGT00780000122937	ENSGT00940000154467.a.h.a #15	ENSGT00940000154172.ab.a.b.a.b #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Beluga whale	MODERN SPECIES	99													LCE7A (ENSDLEG00000010318)	ENSDLEG00000010357 #15	ENSDLEG00000010490 #21	S100A10 (ENSDLEG00000010501) #22	THEM4 (ENSDLEG00000010507) #23	THEM5 (ENSDLEG00000010525) #24	C2CD4D (ENSDLEG00000010546)	RORC (ENSDLEG00000010552) #25	LINGO4 (ENSDLEG00000010572) #26	TDRKH (ENSDLEG00000010583) #27	OAZ3 (ENSDLEG00000010629) #29	MRPL9 (ENSDLEG00000010649) #30	RIIAD1 (ENSDLEG00000010670) #31	CELF3 (ENSDLEG00000010719) #32	SNX27 (ENSDLEG00000011126) #33	TUFT1 (ENSDLEG00000011162) #34	ENSDLEG00000011272	POGZ (ENSDLEG00000011330) #36	PSMB4 (ENSDLEG00000011388) #37
Narwhal	MODERN SPECIES	304	ENSMMNG00015001867	S100A3 (ENSMMNG00015001881)	S100A4 (ENSMMNG00015001896)	S100A5 (ENSMMNG00015001912)	S100A6 (ENSMMNG00015001928)	S100A8 (ENSMMNG00015001948)	S100A12 (ENSMMNG00015001965)	S100A9 (ENSMMNG00015001982)	ENSMMNG00015001997	PRR9 (ENSMMNG00015002010)	ENSMMNG00015002057	ENSMMNG00015002081	LCE7A (ENSMMNG00015002124)	ENSMMNG00015002275 #15	ENSMMNG00015002355 #21	S100A10 (ENSMMNG00015002372) #22	THEM4 (ENSMMNG00015002395) #23	THEM5 (ENSMMNG00015002421) #24	C2CD4D (ENSMMNG00015002439)	RORC (ENSMMNG00015002466) #25	LINGO4 (ENSMMNG00015002524) #26	TDRKH (ENSMMNG00015002542) #27	OAZ3 (ENSMMNG00015002678) #29	MRPL9 (ENSMMNG00015002723) #30	RIIAD1 (ENSMMNG00015002736) #31	CELF3 (ENSMMNG00015002770) #32	SNX27 (ENSMMNG00015002820) #33	ENSMMNG00015002872	TUFT1 (ENSMMNG00015002908) #34	ENSMMNG00015003029	POGZ (ENSMMNG00015003154) #36
Camelidae	ANCESTRAL SPECIES	6	ENSGT00910000144329	ENSGT00940000162189	ENSGT00940000161606	ENSGT00940000162657	ENSGT00700000104637	ENSGT00730000111592	ENSGT00730000111626	ENSGT00940000164168	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.h.b #17	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.x.a #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37	ENSGT00390000014244
Arabian camel	MODERN SPECIES	13	ENSCDRG00005016128	ENSCDRG00005016116	ENSCDRG00005016105	C1orf68 (ENSCDRG00005016061) #8	ENSCDRG00005016046	CRNN (ENSCDRG00005015862) #12	ENSCDRG00005015826 #13	ENSCDRG00005015797 #13	ENSCDRG00005015707 #16	ENSCDRG00005015682	ENSCDRG00005015608 #17	ENSCDRG00005015568 #19	ENSCDRG00005015525 #20	ENSCDRG00005015487 #21	ENSCDRG00005015452	ENSCDRG00005015426 #22	THEM4 (ENSCDRG00005015376) #23	THEM5 (ENSCDRG00005015330) #24	RORC (ENSCDRG00005015191) #25	LINGO4 (ENSCDRG00005015167) #26	TDRKH (ENSCDRG00005015083) #27	OAZ3 (ENSCDRG00005014745) #29	MRPL9 (ENSCDRG00005014548) #30	ENSCDRG00005014479 #31	CELF3 (ENSCDRG00005014367) #32	SNX27 (ENSCDRG00005014065) #33	TUFT1 (ENSCDRG00005013754) #34	ENSCDRG00005013658	POGZ (ENSCDRG00005011049) #36	PSMB4 (ENSCDRG00005010934) #37	SELENBP1 (ENSCDRG00005010725)
Alpaca	MODERN SPECIES	4320																S100A10 (ENSVPAG00000003443) #22
Suina	ANCESTRAL SPECIES	8	ENSGT00940000166289	ENSGT00950000183301	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000161842.a	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00940000163498	ENSGT00730000113097	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.a.i #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000154489.B #35	ENSGT00940000162698	ENSGT00940000160649 #36
Chacoan peccary	MODERN SPECIES	29	SMCP (ENSCWAG00000002916) #7	LCE7A (ENSCWAG00000002921)	LCE1A (ENSCWAG00000002932)	ENSCWAG00000002940	KPRP (ENSCWAG00000002949)	C1orf68 (ENSCWAG00000002953) #8	ENSCWAG00000002958 #10	ENSCWAG00000002982 #12	ENSCWAG00000002990 #13	ENSCWAG00000003000 #13	RPTN (ENSCWAG00000003036) #18	ENSCWAG00000003046 #19	TCHHL1 (ENSCWAG00000003058) #20	ENSCWAG00000003065	S100A11 (ENSCWAG00000003075) #21	S100A10 (ENSCWAG00000003083) #22	THEM5 (ENSCWAG00000003108) #24	C2CD4D (ENSCWAG00000003120)	RORC (ENSCWAG00000003140) #25	LINGO4 (ENSCWAG00000005108) #26	TDRKH (ENSCWAG00000005128) #27	OAZ3 (ENSCWAG00000005285) #29	MRPL9 (ENSCWAG00000005339) #30	RIIAD1 (ENSCWAG00000005371) #31	CELF3 (ENSCWAG00000005407) #32	SNX27 (ENSCWAG00000005517) #33	TUFT1 (ENSCWAG00000005625) #34	CGN (ENSCWAG00000005751) #35	POGZ (ENSCWAG00000005868) #36	PSMB4 (ENSCWAG00000006120) #37	SELENBP1 (ENSCWAG00000006161)
Pig	MODERN SPECIES	12	LCE5A (ENSSSCG00000040878)	ENSSSCG00000053408	LCE3B (ENSSSCG00000061182) #9	ENSSSCG00000051890 #10	ENSSSCG00000053487	CRCT1 (ENSSSCG00000044768)	CRNN (ENSSSCG00000006604) #12	ENSSSCG00000042564 #13	ENSSSCG00000030031	ENSSSCG00000054200	ENSSSCG00000044041 #17	ENSSSCG00000006605 #18	ENSSSCG00000038121 #19	TCHHL1 (ENSSSCG00000006609) #20	S100A11 (ENSSSCG00000006610) #21	S100A10 (ENSSSCG00000006612) #22	ENSSSCG00000057672 #23	THEM5 (ENSSSCG00000006614) #24	C2CD4D (ENSSSCG00000021540)	RORC (ENSSSCG00000026427) #25	LINGO4 (ENSSSCG00000026259) #26	TDRKH (ENSSSCG00000027770) #27	OAZ3 (ENSSSCG00000027091) #29	MRPL9 (ENSSSCG00000028343) #30	RIIAD1 (ENSSSCG00000041677) #31	CELF3 (ENSSSCG00000006618) #32	SNX27 (ENSSSCG00000006619) #33	TUFT1 (ENSSSCG00000006620) #34	ENSSSCG00000006621	POGZ (ENSSSCG00000006622) #36	PSMB4 (ENSSSCG00000034984) #37