Boreoeutheria	DUPLICATION
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00730000111580 #8	ENSGT00940000163498	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000170498	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000154489.B #35	ENSGT00940000162698	ENSGT00940000160649 #36
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00730000111580 #8	ENSGT00940000163498	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000170498	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00940000163498	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a.h.a #15	ENSGT00940000170498	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.i #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00940000163498	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a.h.a #15	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00730000111580 #8	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00940000163498	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a.h.a #15	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00730000111580 #8	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00940000163498	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a.h.a #15	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Pecora	ANCESTRAL SPECIES	2	ENSGT00730000111580 #8	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00940000163498	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a.h.a #15	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00940000163498	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.h.a #15	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.i.a.a ##13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.a.a ##22	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36
Bovidae	ANCESTRAL SPECIES	1	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a.h.a.a #15	ENSGT00940000154467.a.h.a.b ##13	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00950000186450 #28	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183065.B #34	ENSGT00940000162698
Bovinae	ANCESTRAL SPECIES	1	ENSGT00950000183312	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a.h.a.a #15	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00950000186450 #28	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183065.B #34	ENSGT00940000154489.B #35
Bos	ANCESTRAL SPECIES		ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000163498	ENSGT00970000197102	ENSGT01050000245143 #11	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a.h.a.a #15	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00950000186450 #28	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183065.B #34	ENSGT00940000154489.B #35
Bos_a	ANCESTRAL SPECIES	47	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000163498	ENSGT00970000197102	ENSGT01050000245143 #11	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a.h.a.a #15	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00950000186450 #28	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000154489.B #35	ENSGT00940000162698	ENSGT00940000160649 #36
Wild yak	MODERN SPECIES	688	ENSBMUG00000024947 #7	C1orf68 (ENSBMUG00000024927) #8	LCE3B (ENSBMUG00000024922) #9	ENSBMUG00000024916 #10	ENSBMUG00000024912 #11	ENSBMUG00000024905 #12	ENSBMUG00000024887 #13	ENSBMUG00000024880 #14	ENSBMUG00000024877 #15	ENSBMUG00000024872 #16	ENSBMUG00000024867 #17	RPTN (ENSBMUG00000024866) #18	ENSBMUG00000024861 #19	TCHHL1 (ENSBMUG00000024857) #20	ENSBMUG00000024843 #21	S100A10 (ENSBMUG00000024837) #22	THEM4 (ENSBMUG00000024826) #23	THEM5 (ENSBMUG00000024818) #24	RORC (ENSBMUG00000024807) #25	LINGO4 (ENSBMUG00000024776) #26	TDRKH (ENSBMUG00000024766) #27	ENSBMUG00000024752 #28	OAZ3 (ENSBMUG00000024748) #29	MRPL9 (ENSBMUG00000024735) #30	RIIAD1 (ENSBMUG00000024721) #31	CELF3 (ENSBMUG00000024707) #32	SNX27 (ENSBMUG00000024681) #33	TUFT1 (ENSBMUG00000024610) #34	CGN (ENSBMUG00000024577) #35	POGZ (ENSBMUG00000024528) #36	PSMB4 (ENSBMUG00000024466) #37
Domestic yak	MODERN SPECIES	22	KPRP (ENSBGRG00000003208)	C1orf68 (ENSBGRG00000003205) #8	ENSBGRG00000003177	ENSBGRG00000003168	ENSBGRG00000003159 #11	ENSBGRG00000003154 #12	ENSBGRG00000003149 #13	ENSBGRG00000003128 #15	ENSBGRG00000003103 #16	ENSBGRG00000003087 #17	ENSBGRG00000003077 #18	ENSBGRG00000003029 #19	ENSBGRG00000003014 #20	ENSBGRG00000002999	ENSBGRG00000002990 #21	S100A10 (ENSBGRG00000002962) #22	ENSBGRG00000002950	THEM4 (ENSBGRG00000002939) #23	THEM5 (ENSBGRG00000002906) #24	RORC (ENSBGRG00000002783) #25	TDRKH (ENSBGRG00000002702) #27	ENSBGRG00000002678 #28	ENSBGRG00000002657 #29	ENSBGRG00000002612 #26	RIIAD1 (ENSBGRG00000002574) #31	CELF3 (ENSBGRG00000002490) #32	SNX27 (ENSBGRG00000002390) #33	ENSBGRG00000002366	ENSBGRG00000002354	TUFT1 (ENSBGRG00000002325) #34	ENSBGRG00000002259
Bos_b	ANCESTRAL SPECIES	1	ENSGT00730000111580 #8	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00970000197102	ENSGT01050000245143 #11	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.a.h.a.b ##13	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.i.a.a ##13	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00950000186450 #28	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183065.B #34	ENSGT00940000154539.b.u
Cow	MODERN SPECIES	22	ENSBTAG00000053743	ENSBTAG00000054620	C3H1orf68 (ENSBTAG00000046138) #8	ENSBTAG00000050431 #10	CRCT1 (ENSBTAG00000008700)	ENSBTAG00000032446	CRNN (ENSBTAG00000054069) #12	ENSBTAG00000054258 #13	ENSBTAG00000054333 ##13	ENSBTAG00000048997 #16	ENSBTAG00000039357 #17	RPTN (ENSBTAG00000039260) #18	TCHH (ENSBTAG00000053103)	TCHHL1 (ENSBTAG00000015854) #20	S100A11 (ENSBTAG00000015145) #21	S100A10 (ENSBTAG00000015147) #22	THEM4 (ENSBTAG00000004772) #23	ENSBTAG00000051270	THEM5 (ENSBTAG00000000690) #24	C2CD4D (ENSBTAG00000047528)	RORC (ENSBTAG00000017405) #25	LINGO4 (ENSBTAG00000040596) #26	TDRKH (ENSBTAG00000021594) #27	ENSBTAG00000050352 #28	OAZ3 (ENSBTAG00000021591) #29	MRPL9 (ENSBTAG00000000797) #30	CELF3 (ENSBTAG00000019131) #32	SNX27 (ENSBTAG00000001942) #33	ENSBTAG00000054946	TUFT1 (ENSBTAG00000017566) #34	ENSBTAG00000024407
Hybrid Bos Indicus	MODERN SPECIES	22	LCE1A (ENSBIXG00005007992)	C1orf68 (ENSBIXG00005007957) #8	LCE3B (ENSBIXG00005000042) #9	ENSBIXG00005007950 #10	ENSBIXG00005007945	ENSBIXG00005007940 #11	ENSBIXG00005007930 #12	ENSBIXG00005005284 #13	ENSBIXG00005029242 #13	ENSBIXG00005001535 #16	ENSBIXG00005001542 ##13	ENSBIXG00005001545 #18	ENSBIXG00005001555 #19	TCHHL1 (ENSBIXG00005001560) #20	ENSBIXG00005005274 #21	S100A10 (ENSBIXG00005029229) #22	THEM4 (ENSBIXG00005005256) #23	ENSBIXG00005001633	THEM5 (ENSBIXG00005029208) #24	C2CD4D (ENSBIXG00005001695)	RORC (ENSBIXG00005001718) #25	LINGO4 (ENSBIXG00005001805) #26	TDRKH (ENSBIXG00005029148) #27	ENSBIXG00005005150 #28	OAZ3 (ENSBIXG00005001942) #29	MRPL9 (ENSBIXG00005005138) #30	RIIAD1 (ENSBIXG00005001997) #31	CELF3 (ENSBIXG00005005120) #32	SNX27 (ENSBIXG00005005088) #33	ENSBIXG00005005039	TUFT1 (ENSBIXG00005028855) #34
American bison	MODERN SPECIES	3295	ENSBBBG00000003062	ENSBBBG00000009107	SPRR4 (ENSBBBG00000013960)	ENSBBBG00000003052	ENSBBBG00000013950 #7	KPRP (ENSBBBG00000013941)	C1orf68 (ENSBBBG00000013938) #8	LCE3B (ENSBBBG00000003036) #9	ENSBBBG00000013936 #10	ENSBBBG00000013932 #12	ENSBBBG00000003027 #13	ENSBBBG00000002896 #17	ENSBBBG00000013898 #19	TCHHL1 (ENSBBBG00000013893) #20	ENSBBBG00000013884 #21	S100A10 (ENSBBBG00000013878) #22	THEM4 (ENSBBBG00000002992) #23	THEM5 (ENSBBBG00000002989) #24	RORC (ENSBBBG00000013856) #25	LINGO4 (ENSBBBG00000002969) #26	TDRKH (ENSBBBG00000013832) #27	ENSBBBG00000013787 #28	OAZ3 (ENSBBBG00000013776) #29	MRPL9 (ENSBBBG00000002933) #30	RIIAD1 (ENSBBBG00000013726) #31	CELF3 (ENSBBBG00000002911) #32	SNX27 (ENSBBBG00000013687) #33	ENSBBBG00000013643	TUFT1 (ENSBBBG00000013630) #34	ENSBBBG00000013560	CGN (ENSBBBG00000013551) #35
Caprinae	ANCESTRAL SPECIES	2	ENSGT00780000122937	ENSGT00940000166289	ENSGT00950000183312	ENSGT00730000111580 #8	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00940000163498	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a.i.b #18	ENSGT00940000164620	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00950000186450 #28	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36
Goat	MODERN SPECIES	22	ENSCHIG00000013514	SPRR4 (ENSCHIG00000013052)	ENSCHIG00000024891	ENSCHIG00000007657 #7	ENSCHIG00000017937	KPRP (ENSCHIG00000023870)	C1orf68 (ENSCHIG00000011620) #8	LCE3B (ENSCHIG00000012019) #9	CRNN (ENSCHIG00000025673) #12	ENSCHIG00000020535 #13	ENSCHIG00000026233 #17	ENSCHIG00000018492 #18	ENSCHIG00000005102	TCHHL1 (ENSCHIG00000010186) #20	S100A11 (ENSCHIG00000009234) #21	S100A10 (ENSCHIG00000017889) #22	ENSCHIG00000024791	ENSCHIG00000023394	THEM4 (ENSCHIG00000015398) #23	THEM5 (ENSCHIG00000021133) #24	C2CD4D (ENSCHIG00000010717)	RORC (ENSCHIG00000005408) #25	LINGO4 (ENSCHIG00000010031) #26	TDRKH (ENSCHIG00000025326) #27	ENSCHIG00000018414 #28	OAZ3 (ENSCHIG00000024499) #29	MRPL9 (ENSCHIG00000011797) #30	RIIAD1 (ENSCHIG00000025840) #31	CELF3 (ENSCHIG00000025847) #32	ENSCHIG00000012675	SNX27 (ENSCHIG00000021069) #33
Rambouillet Sheep	MODERN SPECIES		LCE1A (ENSOARG00020000260)	ENSOARG00020000228	C1orf68 (ENSOARG00020000210) #8	LCE3B (ENSOARG00020000187) #9	ENSOARG00020000176 #10	ENSOARG00020000162	ENSOARG00020000140 #15	ENSOARG00020000109 #15	ENSOARG00020000102 ##13	ENSOARG00020018940 #16	ENSOARG00020018927 #14	ENSOARG00020018856 #18	ENSOARG00020018824	TCHHL1 (ENSOARG00020018793) #20	S100A11 (ENSOARG00020018738) #21	S100A10 (ENSOARG00020018696) #22	THEM4 (ENSOARG00020018617) #23	THEM5 (ENSOARG00020018565) #24	C2CD4D (ENSOARG00020018535)	RORC (ENSOARG00020018249) #25	LINGO4 (ENSOARG00020018213) #26	TDRKH (ENSOARG00020018147) #27	OAZ3 (ENSOARG00020018023) #29	MRPL9 (ENSOARG00020017917) #30	RIIAD1 (ENSOARG00020017857) #31	CELF3 (ENSOARG00020017622) #32	SNX27 (ENSOARG00020016963) #33	TUFT1 (ENSOARG00020016156) #34	ENSOARG00020016001	POGZ (ENSOARG00020015459) #36	PSMB4 (ENSOARG00020015380) #37
Siberian musk deer	MODERN SPECIES	1243				ENSMMSG00000020455	ENSMMSG00000020485	ENSMMSG00000020597	ENSMMSG00000020612	ENSMMSG00000020304	YEATS4 (ENSMMSG00000020324)	FRS2 (ENSMMSG00000020358)	CCT2 (ENSMMSG00000020398)	LRRC10 (ENSMMSG00000020422)	BEST3 (ENSMMSG00000020449)	RAB3IP (ENSMMSG00000020870)	MYRFL (ENSMMSG00000021224)	ENSMMSG00000021405 #22	CNOT2 (ENSMMSG00000021430)	KCNMB4 (ENSMMSG00000021522)	ENSMMSG00000021535	PTPRB (ENSMMSG00000021623)	PTPRR (ENSMMSG00000022063)	ENSMMSG00000022228
Yarkand deer	MODERN SPECIES	12	ENSCHYG00000019176	ENSCHYG00000019223	KPRP (ENSCHYG00000019359)	LCE3B (ENSCHYG00000019507) #9	ENSCHYG00000019532 #10	ENSCHYG00000019568	ENSCHYG00000005111	ENSCHYG00000005119	LCE5A (ENSCHYG00000005138)	CRNN (ENSCHYG00000005156) #12	ENSCHYG00000005180 #13	ENSCHYG00000005225 #14	ENSCHYG00000005265	TCHHL1 (ENSCHYG00000005278) #20	ENSCHYG00000005300 #21	S100A10 (ENSCHYG00000005318) #22	THEM4 (ENSCHYG00000005358) #23	THEM5 (ENSCHYG00000005402) #24	C2CD4D (ENSCHYG00000005436)	RORC (ENSCHYG00000005468) #25	LINGO4 (ENSCHYG00000005555) #26	TDRKH (ENSCHYG00000005624) #27	OAZ3 (ENSCHYG00000005747) #29	MRPL9 (ENSCHYG00000005891) #30	RIIAD1 (ENSCHYG00000006033) #31	CELF3 (ENSCHYG00000006085) #32	SNX27 (ENSCHYG00000006199) #33	TUFT1 (ENSCHYG00000006362) #34	ENSCHYG00000006682	POGZ (ENSCHYG00000006826) #36	PSMB4 (ENSCHYG00000006978) #37
Cetacea	ANCESTRAL SPECIES		ENSGT00940000160475	ENSGT00940000161854	ENSGT00940000161706	ENSGT00390000000920	ENSGT00940000163114	ENSGT00940000161959	ENSGT00940000161276.C	ENSGT00940000161986	ENSGT00940000161896	ENSGT00910000144329	ENSGT00940000162189	ENSGT00940000161606	ENSGT00940000162657	ENSGT00940000154467.a.h.a #15	ENSGT00940000154172.ab.a.b.a.b #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000161706	ENSGT00390000000920	ENSGT00940000163114	ENSGT00940000161959	ENSGT00940000161276.C	ENSGT00940000161986	ENSGT00940000161896	ENSGT00910000144329	ENSGT00940000162189	ENSGT00940000161606	ENSGT00940000162657	ENSGT00940000163248	ENSGT00940000164168	ENSGT00940000154467.a.h.a #15	ENSGT00940000154172.ab.a.b.a.b #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Sperm whale	MODERN SPECIES	15	NUP210L (ENSPCTG00005015439)	NPR1 (ENSPCTG00005015896)	INTS3 (ENSPCTG00005016167)	SLC27A3 (ENSPCTG00005016261)	GATAD2B (ENSPCTG00005016424)	ENSPCTG00005016521	S100A8 (ENSPCTG00005016557)	S100A12 (ENSPCTG00005016598)	S100A9 (ENSPCTG00005016642)	ENSPCTG00005016678	ENSPCTG00005016724	ENSPCTG00005016816	ENSPCTG00005016869	IVL (ENSPCTG00005017017)	S100A11 (ENSPCTG00005017173) #21	S100A10 (ENSPCTG00005017205) #22	THEM4 (ENSPCTG00005017250) #23	TUFT1 (ENSPCTG00005017363) #34	SNX27 (ENSPCTG00005017684) #33	CELF3 (ENSPCTG00005017933) #32	RIIAD1 (ENSPCTG00005018184) #31	MRPL9 (ENSPCTG00005018221) #30	OAZ3 (ENSPCTG00005018289) #29	TDRKH (ENSPCTG00005018417) #27	POGZ (ENSPCTG00005018518) #36	PSMB4 (ENSPCTG00005018741) #37	ENSPCTG00005018784	SELENBP1 (ENSPCTG00005018804)	RFX5 (ENSPCTG00005019016)	PI4KB (ENSPCTG00005019046)	PSMD4 (ENSPCTG00005019075)
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00940000160475	ENSGT00940000161854	ENSGT00940000161706	ENSGT00390000000920	ENSGT00940000163114	ENSGT00940000161959	ENSGT00940000161276.C	ENSGT00940000161986	ENSGT00940000161896	ENSGT00910000144329	ENSGT00940000162189	ENSGT00940000161606	ENSGT00940000162657	ENSGT00940000154467.a.h.a #15	ENSGT00940000154172.ab.a.b.a.b #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Dolphin	MODERN SPECIES	4431																S100A10 (ENSTTRG00000008647) #22
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000161854	ENSGT00940000161706	ENSGT00390000000920	ENSGT00940000163114	ENSGT00940000161959	ENSGT00940000161276.C	ENSGT00940000161986	ENSGT00940000161896	ENSGT00910000144329	ENSGT00940000162189	ENSGT00940000161606	ENSGT00940000162657	ENSGT00390000009110.`b.a	ENSGT00940000154467.a.h.a #15	ENSGT00940000154172.ab.a.b.a.b #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Vaquita	MODERN SPECIES		S100A16 (ENSPSNG00000001392)	ENSPSNG00000001377	S100A4 (ENSPSNG00000001347)	S100A5 (ENSPSNG00000001323)	S100A6 (ENSPSNG00000001310)	S100A8 (ENSPSNG00000001301)	S100A12 (ENSPSNG00000001285)	S100A9 (ENSPSNG00000001270)	ENSPSNG00000001247	ENSPSNG00000001227	ENSPSNG00000001169	ENSPSNG00000001131	ENSPSNG00000001116	ENSPSNG00000001017 #14	ENSPSNG00000000955 #21	ENSPSNG00000000934 #22	THEM4 (ENSPSNG00000000910) #23	THEM5 (ENSPSNG00000000888) #24	C2CD4D (ENSPSNG00000000879)	RORC (ENSPSNG00000000836) #25	LINGO4 (ENSPSNG00000000787) #26	TDRKH (ENSPSNG00000000758) #27	OAZ3 (ENSPSNG00000000680) #29	MRPL9 (ENSPSNG00000000615) #30	RIIAD1 (ENSPSNG00000000589) #31	CELF3 (ENSPSNG00000000542) #32	ENSPSNG00000000510	SNX27 (ENSPSNG00000000477) #33	TUFT1 (ENSPSNG00000000346) #34	ENSPSNG00000000227	POGZ (ENSPSNG00000000153) #36
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000161854	ENSGT00940000161706	ENSGT00390000000920	ENSGT00940000163114	ENSGT00940000161959	ENSGT00940000161276.C	ENSGT00940000161986	ENSGT00940000161896	ENSGT00910000144329	ENSGT00940000162189	ENSGT00940000161606	ENSGT00390000009110.`b.a	ENSGT00780000122937	ENSGT00940000154467.a.h.a #15	ENSGT00940000154172.ab.a.b.a.b #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Beluga whale	MODERN SPECIES	99													LCE7A (ENSDLEG00000010318)	ENSDLEG00000010357 #15	ENSDLEG00000010490 #21	S100A10 (ENSDLEG00000010501) #22	THEM4 (ENSDLEG00000010507) #23	THEM5 (ENSDLEG00000010525) #24	C2CD4D (ENSDLEG00000010546)	RORC (ENSDLEG00000010552) #25	LINGO4 (ENSDLEG00000010572) #26	TDRKH (ENSDLEG00000010583) #27	OAZ3 (ENSDLEG00000010629) #29	MRPL9 (ENSDLEG00000010649) #30	RIIAD1 (ENSDLEG00000010670) #31	CELF3 (ENSDLEG00000010719) #32	SNX27 (ENSDLEG00000011126) #33	TUFT1 (ENSDLEG00000011162) #34	ENSDLEG00000011272	POGZ (ENSDLEG00000011330) #36	PSMB4 (ENSDLEG00000011388) #37
Narwhal	MODERN SPECIES	304	ENSMMNG00015001867	S100A3 (ENSMMNG00015001881)	S100A4 (ENSMMNG00015001896)	S100A5 (ENSMMNG00015001912)	S100A6 (ENSMMNG00015001928)	S100A8 (ENSMMNG00015001948)	S100A12 (ENSMMNG00015001965)	S100A9 (ENSMMNG00015001982)	ENSMMNG00015001997	PRR9 (ENSMMNG00015002010)	ENSMMNG00015002057	ENSMMNG00015002081	LCE7A (ENSMMNG00015002124)	ENSMMNG00015002275 #15	ENSMMNG00015002355 #21	S100A10 (ENSMMNG00015002372) #22	THEM4 (ENSMMNG00015002395) #23	THEM5 (ENSMMNG00015002421) #24	C2CD4D (ENSMMNG00015002439)	RORC (ENSMMNG00015002466) #25	LINGO4 (ENSMMNG00015002524) #26	TDRKH (ENSMMNG00015002542) #27	OAZ3 (ENSMMNG00015002678) #29	MRPL9 (ENSMMNG00015002723) #30	RIIAD1 (ENSMMNG00015002736) #31	CELF3 (ENSMMNG00015002770) #32	SNX27 (ENSMMNG00015002820) #33	ENSMMNG00015002872	TUFT1 (ENSMMNG00015002908) #34	ENSMMNG00015003029	POGZ (ENSMMNG00015003154) #36
Camelidae	ANCESTRAL SPECIES	6	ENSGT00910000144329	ENSGT00940000162189	ENSGT00940000161606	ENSGT00940000162657	ENSGT00700000104637	ENSGT00730000111592	ENSGT00730000111626	ENSGT00940000164168	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.h.b #17	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.x.a #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37	ENSGT00390000014244
Arabian camel	MODERN SPECIES	13	ENSCDRG00005016128	ENSCDRG00005016116	ENSCDRG00005016105	C1orf68 (ENSCDRG00005016061) #8	ENSCDRG00005016046	CRNN (ENSCDRG00005015862) #12	ENSCDRG00005015826 #13	ENSCDRG00005015797 #13	ENSCDRG00005015707 #16	ENSCDRG00005015682	ENSCDRG00005015608 #17	ENSCDRG00005015568 #19	ENSCDRG00005015525 #20	ENSCDRG00005015487 #21	ENSCDRG00005015452	ENSCDRG00005015426 #22	THEM4 (ENSCDRG00005015376) #23	THEM5 (ENSCDRG00005015330) #24	RORC (ENSCDRG00005015191) #25	LINGO4 (ENSCDRG00005015167) #26	TDRKH (ENSCDRG00005015083) #27	OAZ3 (ENSCDRG00005014745) #29	MRPL9 (ENSCDRG00005014548) #30	ENSCDRG00005014479 #31	CELF3 (ENSCDRG00005014367) #32	SNX27 (ENSCDRG00005014065) #33	TUFT1 (ENSCDRG00005013754) #34	ENSCDRG00005013658	POGZ (ENSCDRG00005011049) #36	PSMB4 (ENSCDRG00005010934) #37	SELENBP1 (ENSCDRG00005010725)
Alpaca	MODERN SPECIES	4320																S100A10 (ENSVPAG00000003443) #22
Suina	ANCESTRAL SPECIES	8	ENSGT00940000166289	ENSGT00950000183301	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000161842.a	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00940000163498	ENSGT00730000113097	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.a.i #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000154489.B #35	ENSGT00940000162698	ENSGT00940000160649 #36
Chacoan peccary	MODERN SPECIES	29	SMCP (ENSCWAG00000002916) #7	LCE7A (ENSCWAG00000002921)	LCE1A (ENSCWAG00000002932)	ENSCWAG00000002940	KPRP (ENSCWAG00000002949)	C1orf68 (ENSCWAG00000002953) #8	ENSCWAG00000002958 #10	ENSCWAG00000002982 #12	ENSCWAG00000002990 #13	ENSCWAG00000003000 #13	RPTN (ENSCWAG00000003036) #18	ENSCWAG00000003046 #19	TCHHL1 (ENSCWAG00000003058) #20	ENSCWAG00000003065	S100A11 (ENSCWAG00000003075) #21	S100A10 (ENSCWAG00000003083) #22	THEM5 (ENSCWAG00000003108) #24	C2CD4D (ENSCWAG00000003120)	RORC (ENSCWAG00000003140) #25	LINGO4 (ENSCWAG00000005108) #26	TDRKH (ENSCWAG00000005128) #27	OAZ3 (ENSCWAG00000005285) #29	MRPL9 (ENSCWAG00000005339) #30	RIIAD1 (ENSCWAG00000005371) #31	CELF3 (ENSCWAG00000005407) #32	SNX27 (ENSCWAG00000005517) #33	TUFT1 (ENSCWAG00000005625) #34	CGN (ENSCWAG00000005751) #35	POGZ (ENSCWAG00000005868) #36	PSMB4 (ENSCWAG00000006120) #37	SELENBP1 (ENSCWAG00000006161)
Pig	MODERN SPECIES	12	LCE5A (ENSSSCG00000040878)	ENSSSCG00000053408	LCE3B (ENSSSCG00000061182) #9	ENSSSCG00000051890 #10	ENSSSCG00000053487	CRCT1 (ENSSSCG00000044768)	CRNN (ENSSSCG00000006604) #12	ENSSSCG00000042564 #13	ENSSSCG00000030031	ENSSSCG00000054200	ENSSSCG00000044041 #17	ENSSSCG00000006605 #18	ENSSSCG00000038121 #19	TCHHL1 (ENSSSCG00000006609) #20	S100A11 (ENSSSCG00000006610) #21	S100A10 (ENSSSCG00000006612) #22	ENSSSCG00000057672 #23	THEM5 (ENSSSCG00000006614) #24	C2CD4D (ENSSSCG00000021540)	RORC (ENSSSCG00000026427) #25	LINGO4 (ENSSSCG00000026259) #26	TDRKH (ENSSSCG00000027770) #27	OAZ3 (ENSSSCG00000027091) #29	MRPL9 (ENSSSCG00000028343) #30	RIIAD1 (ENSSSCG00000041677) #31	CELF3 (ENSSSCG00000006618) #32	SNX27 (ENSSSCG00000006619) #33	TUFT1 (ENSSSCG00000006620) #34	ENSSSCG00000006621	POGZ (ENSSSCG00000006622) #36	PSMB4 (ENSSSCG00000034984) #37
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00730000111580 #8	ENSGT00940000163905 #10	ENSGT00940000165404 #9	ENSGT00940000163498	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000170498	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.i #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Carnivora	ANCESTRAL SPECIES	1	ENSGT00950000183301	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000163905 #10	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000170498	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.i #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Felidae	ANCESTRAL SPECIES	10	ENSGT00780000122937	ENSGT00950000183301	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000163905 #10	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.a.h.a #15	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.i #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000154489.B #35	ENSGT00940000162698	ENSGT00940000160649 #36
Panthera	ANCESTRAL SPECIES	40	ENSGT00780000122937	ENSGT00950000183301	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000163905.e #10	ENSGT00940000163905.f #10	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.i #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000154489.B #35	ENSGT00940000162698	ENSGT00940000160649 #36
Tiger	MODERN SPECIES	275			ENSPTIG00000006961	ENSPTIG00000006953	ENSPTIG00000006948	ENSPTIG00000006897 #7	C1orf68 (ENSPTIG00000006854) #8	ENSPTIG00000006839 #10	ENSPTIG00000006837 #10	LCE5A (ENSPTIG00000006817)	CRNN (ENSPTIG00000015000) #12	ENSPTIG00000014745 #13	RPTN (ENSPTIG00000013862) #18	TCHHL1 (ENSPTIG00000013468) #20	S100A11 (ENSPTIG00000012739) #21	S100A10 (ENSPTIG00000012263) #22	THEM4 (ENSPTIG00000011246) #23	THEM5 (ENSPTIG00000010208) #24	RORC (ENSPTIG00000008094) #25	LINGO4 (ENSPTIG00000006738) #26	TDRKH (ENSPTIG00000019916) #27	OAZ3 (ENSPTIG00000018493) #29	MRPL9 (ENSPTIG00000017020) #30	ENSPTIG00000016080	CELF3 (ENSPTIG00000013450) #32	SNX27 (ENSPTIG00000011081) #33	TUFT1 (ENSPTIG00000007975) #34	ENSPTIG00000006973	POGZ (ENSPTIG00000020597) #36	PSMB4 (ENSPTIG00000019518) #37	SELENBP1 (ENSPTIG00000016772)
Panthera_a	ANCESTRAL SPECIES	38					ENSGT00940000163905.e #10	ENSGT00940000163905.f #10	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.i #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000154489.B #35	ENSGT00940000160649 #36	ENSGT00390000000698 #37
lion	MODERN SPECIES	8	WARS2 (ENSPLOG00000011821)	HAO2 (ENSPLOG00000011694)	ENSPLOG00000011592	ZNF697 (ENSPLOG00000011563)	PHGDH (ENSPLOG00000011111)	HMGCS2 (ENSPLOG00000010925)	REG4 (ENSPLOG00000010847)	NOTCH2 (ENSPLOG00000010680)	SEC22B (ENSPLOG00000010603)	PDE4DIP (ENSPLOG00000009882)	ENSPLOG00000009717 #16	RPTN (ENSPLOG00000009684) #18	ENSPLOG00000009645 #19	TCHHL1 (ENSPLOG00000009612) #20	ENSPLOG00000009583 #21	S100A10 (ENSPLOG00000009560) #22	THEM4 (ENSPLOG00000009530) #23	THEM5 (ENSPLOG00000009488) #24	C2CD4D (ENSPLOG00000009475)	RORC (ENSPLOG00000009361) #25	LINGO4 (ENSPLOG00000009326) #26	TDRKH (ENSPLOG00000009153) #27	OAZ3 (ENSPLOG00000008964) #29	MRPL9 (ENSPLOG00000008857) #30	RIIAD1 (ENSPLOG00000008817) #31	CELF3 (ENSPLOG00000008678) #32	SNX27 (ENSPLOG00000008397) #33	TUFT1 (ENSPLOG00000008146) #34	CGN (ENSPLOG00000007937) #35	POGZ (ENSPLOG00000007770) #36	PSMB4 (ENSPLOG00000007693) #37
leopard	MODERN SPECIES	149								ENSPPRG00000022177 #10	ENSPPRG00000022208 #10	CRCT1 (ENSPPRG00000022224)	LCE5A (ENSPPRG00000013328)	CRNN (ENSPPRG00000013371) #12	ENSPPRG00000016115 #13	RPTN (ENSPPRG00000016821) #18	ENSPPRG00000023830 #21	S100A10 (ENSPPRG00000023731) #22	THEM4 (ENSPPRG00000023499) #23	THEM5 (ENSPPRG00000023321) #24	C2CD4D (ENSPPRG00000022384)	RORC (ENSPPRG00000000165) #25	LINGO4 (ENSPPRG00000022395) #26	TDRKH (ENSPPRG00000001585) #27	OAZ3 (ENSPPRG00000002633) #29	MRPL9 (ENSPPRG00000003556) #30	RIIAD1 (ENSPPRG00000003657) #31	CELF3 (ENSPPRG00000004600) #32	SNX27 (ENSPPRG00000012629) #33	TUFT1 (ENSPPRG00000020942) #34	CGN (ENSPPRG00000024471) #35	POGZ (ENSPPRG00000023722) #36	PSMB4 (ENSPPRG00000023427) #37
Cat	MODERN SPECIES	239	KPRP (ENSFCAG00000039269)	ENSFCAG00000034900	C1orf68 (ENSFCAG00000036698) #8	ENSFCAG00000040599	LCE3B (ENSFCAG00000045888) #9	ENSFCAG00000044273 #10	CRNN (ENSFCAG00000045642) #12	ENSFCAG00000044571 #13	ENSFCAG00000053766 #15	HRNR (ENSFCAG00000049092) #16	ENSFCAG00000048765	RPTN (ENSFCAG00000040577) #18	ENSFCAG00000045818 #19	TCHHL1 (ENSFCAG00000046571) #20	ENSFCAG00000041899 #21	S100A10 (ENSFCAG00000010423) #22	THEM4 (ENSFCAG00000003443) #23	THEM5 (ENSFCAG00000010981) #24	C2CD4D (ENSFCAG00000026060)	RORC (ENSFCAG00000018105) #25	LINGO4 (ENSFCAG00000010784) #26	TDRKH (ENSFCAG00000010980) #27	OAZ3 (ENSFCAG00000010979) #29	MRPL9 (ENSFCAG00000043355) #30	RIIAD1 (ENSFCAG00000019369) #31	CELF3 (ENSFCAG00000007908) #32	SNX27 (ENSFCAG00000041414) #33	TUFT1 (ENSFCAG00000004073) #34	CGN (ENSFCAG00000004072)	POGZ (ENSFCAG00000001864) #36	PSMB4 (ENSFCAG00000001861) #37
Caniformia	ANCESTRAL SPECIES	31	ENSGT00940000164168	ENSGT00440000039991 #7	ENSGT00950000183301	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000163905 #10	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000170498	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.i #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Caniformia_b	DUPLICATION
Caniformia_b	DUPLICATION
Caniformia_b	ANCESTRAL SPECIES																	ENSGT00940000154197.b.b.y.a #22
Mustelinae	ANCESTRAL SPECIES																	ENSGT00940000154197.b.b.y.a #22
American mink	MODERN SPECIES	7	B4GALT5 (ENSNVIG00000007732)	PTGIS (ENSNVIG00000007847)	KCNB1 (ENSNVIG00000007882)	ENSNVIG00000007903	ZNFX1 (ENSNVIG00000007977)	DDX27 (ENSNVIG00000008022)	STAU1 (ENSNVIG00000008091)	XPO2 (ENSNVIG00000008329)	ENSNVIG00000008477	ARFGEF2 (ENSNVIG00000008501)	PREX1 (ENSNVIG00000008654)	SULF2 (ENSNVIG00000008727)	NCOA3 (ENSNVIG00000008834)	ZMYND8 (ENSNVIG00000008911)	EYA2 (ENSNVIG00000009193)	ENSNVIG00000009316 #22	SLC2A10 (ENSNVIG00000009325)	TP53RK (ENSNVIG00000009336)	SLC13A3 (ENSNVIG00000009356)	OCSTAMP (ENSNVIG00000009453)	ENSNVIG00000009478	ENSNVIG00000009502	ELMO2 (ENSNVIG00000009522)	SLC35C2 (ENSNVIG00000009604)	CDH22 (ENSNVIG00000009638)	TNR5 (ENSNVIG00000009676)	NCOA5 (ENSNVIG00000009734)	ENSNVIG00000009758	ENSNVIG00000009793	MMP9 (ENSNVIG00000009799)	ZNF335 (ENSNVIG00000009815)
Caniformia_b	ANCESTRAL SPECIES	35	ENSGT00940000163019	ENSGT00940000163248	ENSGT00940000164168	ENSGT00440000039991 #7	ENSGT00950000183301	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000163905 #10	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000170498	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.i #18	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b.y.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Mustelinae	ANCESTRAL SPECIES	81										ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.i #18	ENSGT00940000163983 #19	ENSGT00940000164620	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b.y.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
American mink	MODERN SPECIES	316												ENSNVIG00000014136 #16	RPTN (ENSNVIG00000014147) #18	TCHHL1 (ENSNVIG00000014160) #20	S100A11 (ENSNVIG00000014167) #21	S100A10 (ENSNVIG00000014176) #22	THEM4 (ENSNVIG00000014185) #23	THEM5 (ENSNVIG00000014205) #24	C2CD4D (ENSNVIG00000014218)	RORG (ENSNVIG00000014222) #25	LINGO4 (ENSNVIG00000014264) #26	TDRKH (ENSNVIG00000014276) #27	OAZ3 (ENSNVIG00000014414) #29	MRPL9 (ENSNVIG00000014498) #30	RIIAD1 (ENSNVIG00000014540) #31	CELF3 (ENSNVIG00000014558) #32	SNX27 (ENSNVIG00000014632) #33	TUFT1 (ENSNVIG00000014726) #34	ENSNVIG00000014806	POGZ (ENSNVIG00000014867) #36	PSMB4 (ENSNVIG00000015080) #37
Ursidae	ANCESTRAL SPECIES		ENSGT00940000163248	ENSGT00940000164168	ENSGT00440000039991 #7	ENSGT00950000183301	ENSGT00730000111554	ENSGT00940000161842.b	ENSGT00730000111580 #8	ENSGT00940000163905 #10	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000170498	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.i #18	ENSGT00940000162966 #20	ENSGT00940000154172.g.b #21	ENSGT00940000154197.b.b.y.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37	ENSGT00390000014244
Ursus	DUPLICATION
Ursus	ANCESTRAL SPECIES	5	ENSGT00390000012431	ENSGT00940000159994	ENSGT00950000182904.a.b.b	ENSGT00390000012482	ENSGT00940000159489	ENSGT00390000015797.c.a	ENSGT00940000161827	ENSGT00940000163613	ENSGT00940000159134	ENSGT00940000160489	ENSGT00940000160221	ENSGT00940000154929.B	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000154197.b.b.y.b.a #22	ENSGT00940000159323	ENSGT00940000161246	ENSGT00390000001907	ENSGT00940000160542	ENSGT00390000013782	ENSGT00390000006166	ENSGT00390000016851	ENSGT00940000157019	ENSGT00390000007029.j	ENSGT00390000012240.i	ENSGT00390000007336	ENSGT00510000049316	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748
Polar bear	MODERN SPECIES	255	PIK3R2 (ENSUMAG00000009514)	MAST3 (ENSUMAG00000009640)	IL12RB1 (ENSUMAG00000009832)	ENSUMAG00000009844	ENSUMAG00000009850	CCDC124 (ENSUMAG00000009858)	SLC5A5 (ENSUMAG00000009865)	ENSUMAG00000009876	JAK3 (ENSUMAG00000009973)	B3GNT3 (ENSUMAG00000010749)	FCHO1 (ENSUMAG00000010837)	MAP1S (ENSUMAG00000011311)	ENSUMAG00000011373	NIBAN3 (ENSUMAG00000011737)	PGLS (ENSUMAG00000011747)	ENSUMAG00000011752 #22	SLC27A1 (ENSUMAG00000011769)	ENSUMAG00000011774	MVB12A (ENSUMAG00000011781)	ENSUMAG00000011787	PLVAP (ENSUMAG00000011789)	ANO8 (ENSUMAG00000011803)	ENSUMAG00000011835	ENSUMAG00000011843	ENSUMAG00000011847	ENSUMAG00000011853	ENSUMAG00000011855	BABAM1 (ENSUMAG00000011859)	USHBP1 (ENSUMAG00000011869)	ENSUMAG00000011885	ENSUMAG00000011888
American black bear	MODERN SPECIES	994											MAP1S (ENSUAMG00000000342)	ENSUAMG00000000381	COLGALT1 (ENSUAMG00000001248)	NIBAN3 (ENSUAMG00000001413)	PGLS (ENSUAMG00000001538)	ENSUAMG00000001541 #22	SLC27A1 (ENSUAMG00000001548)	NXNL1 (ENSUAMG00000001563)	TMEM221 (ENSUAMG00000001572)	MVB12A (ENSUAMG00000001586)	ENSUAMG00000001590
Ursus	ANCESTRAL SPECIES	18	ENSGT00390000002634.b	ENSGT00940000153231.B	ENSGT01100000263525.a.b.b.c.b	ENSGT00950000185586	ENSGT00940000163248	ENSGT00940000164168	ENSGT00440000039991 #7	ENSGT00730000111554	ENSGT00940000161842.b	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.i #18	ENSGT00940000162966 #20	ENSGT00940000154172.g.b #21	ENSGT00940000154197.b.b.y.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37	ENSGT00390000014244.bb
Polar bear	MODERN SPECIES	193	ENSUMAG00000001108	PGLYRP4 (ENSUMAG00000001126)	PGLYRP3 (ENSUMAG00000001171)	ENSUMAG00000001191	ENSUMAG00000001205	ENSUMAG00000001215	ENSUMAG00000001231	SMCP (ENSUMAG00000001235) #7	ENSUMAG00000001281	ENSUMAG00000001292 #12	ENSUMAG00000001308 #13	ENSUMAG00000001321 #16	ENSUMAG00000001326 #18	TCHHL1 (ENSUMAG00000001361) #20	S100A11 (ENSUMAG00000001371) #21	ENSUMAG00000001376 #22	THEM4 (ENSUMAG00000001386) #23	THEM5 (ENSUMAG00000001423) #24	RORC (ENSUMAG00000001429) #25	LINGO4 (ENSUMAG00000001441) #26	TDRKH (ENSUMAG00000001456) #27	OAZ3 (ENSUMAG00000001672) #29	MRPL9 (ENSUMAG00000001723) #30	ENSUMAG00000001727	RIIAD1 (ENSUMAG00000001735) #31	CELF3 (ENSUMAG00000001772) #32	SNX27 (ENSUMAG00000001910) #33	TUFT1 (ENSUMAG00000002225) #34	ENSUMAG00000002267	POGZ (ENSUMAG00000002469) #36	PSMB4 (ENSUMAG00000002476) #37
Giant Panda	MODERN SPECIES	11	ENSAMEG00000025202	SMCP (ENSAMEG00000019350) #7	ENSAMEG00000027287	ENSAMEG00000027951	ENSAMEG00000011369	ENSAMEG00000028140	C1orf68 (ENSAMEG00000023884) #8	ENSAMEG00000028600 #10	ENSAMEG00000025755 #12	ENSAMEG00000028230 #13	ENSAMEG00000029891	ENSAMEG00000024220 #16	RPTN (ENSAMEG00000028886) #18	TCHHL1 (ENSAMEG00000004225) #20	ENSAMEG00000030837 #21	S100A10 (ENSAMEG00000000350) #22	THEM4 (ENSAMEG00000000355) #23	THEM5 (ENSAMEG00000000361) #24	RORC (ENSAMEG00000000363) #25	LINGO4 (ENSAMEG00000019097) #26	TDRKH (ENSAMEG00000000421) #27	OAZ3 (ENSAMEG00000000484) #29	ENSAMEG00000000491 #30	RIIAD1 (ENSAMEG00000029312) #31	CELF3 (ENSAMEG00000000509) #32	SNX27 (ENSAMEG00000000540) #33	TUFT1 (ENSAMEG00000000574) #34	ENSAMEG00000000601	POGZ (ENSAMEG00000000622) #36	PSMB4 (ENSAMEG00000000645) #37	SELENBP1 (ENSAMEG00000000659)
Caniformia_b	ANCESTRAL SPECIES																	ENSGT00940000154197.b.b.z #22
Mustelinae	ANCESTRAL SPECIES																	ENSGT00940000154197.b.b.z #22
Ferret	DUPLICATION
Ferret	MODERN SPECIES	398								ENSMPUG00000003475 #14	ENSMPUG00000003479	ENSMPUG00000003481 #16	ENSMPUG00000003484 #18	ENSMPUG00000003490 #19	ENSMPUG00000003496	TCHHL1 (ENSMPUG00000003502) #20	ENSMPUG00000003509 #21	ENSMPUG00000003517 #22	ENSMPUG00000003526 #23	THEM5 (ENSMPUG00000003530) #24	ENSMPUG00000003542	RORC (ENSMPUG00000003550) #25	LINGO4 (ENSMPUG00000018420) #26	TDRKH (ENSMPUG00000003558) #27	OAZ3 (ENSMPUG00000003571) #29	MRPL9 (ENSMPUG00000003590) #30	RIIAD1 (ENSMPUG00000003602) #31	CELF3 (ENSMPUG00000003617) #32	SNX27 (ENSMPUG00000003631) #33	TUFT1 (ENSMPUG00000003694) #34	ENSMPUG00000003701	ENSMPUG00000003710	POGZ (ENSMPUG00000003718) #36
Ferret	MODERN SPECIES	300	TGS1 (ENSMPUG00000010475)	TMEM68 (ENSMPUG00000010480)	ENSMPUG00000010486	ENSMPUG00000010493	RP1 (ENSMPUG00000010497)	SOX17 (ENSMPUG00000010506)	ENSMPUG00000010510	ENSMPUG00000010523	ENSMPUG00000018368	ENSMPUG00000010533	LYPLA1 (ENSMPUG00000010559)	ENSMPUG00000010596	TCEA1 (ENSMPUG00000010602)	RGS20 (ENSMPUG00000010644)	ATP6V1H (ENSMPUG00000010647)	ENSMPUG00000018369 #22	OPRK1 (ENSMPUG00000010654)
Ursidae	ANCESTRAL SPECIES																	ENSGT00940000154197.b.b.z #22
Giant Panda	DUPLICATION
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	1314																ENSAMEG00000025466 #22
Giant Panda	MODERN SPECIES	1148																ENSAMEG00000031345 #22
Giant Panda	MODERN SPECIES	1290																ENSAMEG00000026724 #22
Canidae	DUPLICATION
Canidae	DUPLICATION
Canidae	ANCESTRAL SPECIES	35	ENSGT00530000063558.A	ENSGT00530000063503.a.a	ENSGT00940000157308	ENSGT00530000063907.d	ENSGT00950000185406	ENSGT00530000063169.b.b	ENSGT00390000010218.e.b	ENSGT00900000141090	ENSGT00950000183105.A.m.a	ENSGT00910000144283	ENSGT00950000182866.D.d.a.d	ENSGT00940000153695.B	ENSGT00940000156527	ENSGT00940000156881	ENSGT00940000156631.B	ENSGT00940000154197.b.b.`b.a #22	ENSGT00390000008948	ENSGT00940000158592	ENSGT00390000007697	ENSGT00390000006307	ENSGT00940000160318	ENSGT00940000153251.a	ENSGT00940000161692	ENSGT00390000016177.f	ENSGT00390000004910	ENSGT00940000162847	ENSGT00940000153998.a	ENSGT00950000183224	ENSGT00390000004871.b.l	ENSGT00390000004871.a	ENSGT00410000029325
Canis_lupus	ANCESTRAL SPECIES	31	ENSGT00530000063558.A	ENSGT00530000063503.a.a	ENSGT00940000157308	ENSGT00530000063907.d	ENSGT00950000185406	ENSGT00530000063169.b.b	ENSGT00390000010218.e.b	ENSGT00900000141090	ENSGT00950000183105.A.m.a	ENSGT00910000144283	ENSGT00950000182866.D.d.a.d	ENSGT00940000153695.B	ENSGT00940000156527	ENSGT00940000156881	ENSGT00940000156631.B	ENSGT00940000154197.b.b.`b.a #22	ENSGT00390000008948	ENSGT00940000158592	ENSGT00390000007697	ENSGT00390000006307	ENSGT00940000160318	ENSGT00940000153251.a	ENSGT00940000161692	ENSGT00390000016177.f.a	ENSGT00390000004910	ENSGT00940000162847	ENSGT00940000153998.a	ENSGT00950000183224	ENSGT00390000004871.b.l	ENSGT00390000004871.a	ENSGT00410000029325
Dog	MODERN SPECIES	26	ENSCAFG00845021152	ENSCAFG00845021173	ENSCAFG00845021216	TRMT10C (ENSCAFG00845021243)	PCNP (ENSCAFG00845021277)	ZBTB11 (ENSCAFG00845021345)	RPL24 (ENSCAFG00845021526)	CEP97 (ENSCAFG00845021636)	NXPE3 (ENSCAFG00845021747)	NFKBIZ (ENSCAFG00845021884)	ZPLD1 (ENSCAFG00845022199)	ENSCAFG00845022304	ALCAM (ENSCAFG00845022356)	ENSCAFG00845022553	CBLB (ENSCAFG00845022767)	ENSCAFG00845023207 #22	CCDC54 (ENSCAFG00845023224)	BBX (ENSCAFG00845023396)	CD47 (ENSCAFG00845024257)	IFT57 (ENSCAFG00845024514)	MYH15 (ENSCAFG00845024820)	CIP2A (ENSCAFG00845025731)	DZIP3 (ENSCAFG00845026061)	ENSCAFG00845026866	TRAT1 (ENSCAFG00845026944)	GUCA1C (ENSCAFG00845027038)	MORC1 (ENSCAFG00845027112)	C33H3orf85 (ENSCAFG00845027239)	ENSCAFG00845027272	ENSCAFG00845027408	NECTIN3 (ENSCAFG00845027455)
Dingo	MODERN SPECIES	65	ENSCAFG00020009217	SENP7 (ENSCAFG00020008889)	ENSCAFG00020008867	ENSCAFG00020008864	TRMT10C (ENSCAFG00020008862)	PCNP (ENSCAFG00020008846)	ZBTB11 (ENSCAFG00020008835)	RPL24 (ENSCAFG00020008829)	CEP97 (ENSCAFG00020008805)	NXPE3 (ENSCAFG00020008802)	NFKBIZ (ENSCAFG00020008790)	ZPLD1 (ENSCAFG00020008754)	ENSCAFG00020008738	ALCAM (ENSCAFG00020008731)	CBLB (ENSCAFG00020008526)	ENSCAFG00020008488 #22	CCDC54 (ENSCAFG00020008463)	BBX (ENSCAFG00020008323)	CD47 (ENSCAFG00020008300)	IFT57 (ENSCAFG00020008287)	MYH15 (ENSCAFG00020008254)	CIP2A (ENSCAFG00020008089)	DZIP3 (ENSCAFG00020007716)	ENSCAFG00020007673	TRAT1 (ENSCAFG00020007659)	GUCA1C (ENSCAFG00020007650)	ENSCAFG00020007635	ENSCAFG00020007632	NECTIN3 (ENSCAFG00020007611)	ZBED2 (ENSCAFG00020007603)	CD96 (ENSCAFG00020007587)
Red fox	MODERN SPECIES	6	ENSVVUG00000021734	TRMT10C (ENSVVUG00000021735)	PCNP (ENSVVUG00000021736)	ZBTB11 (ENSVVUG00000021737)	RPL24 (ENSVVUG00000021739)	CEP97 (ENSVVUG00000021740)	NXPE3 (ENSVVUG00000021743)	NFKBIZ (ENSVVUG00000021744)	ENSVVUG00000021747	ZPLD1 (ENSVVUG00000021754)	ENSVVUG00000021771	ENSVVUG00000021772	ENSVVUG00000021773	ALCAM (ENSVVUG00000021774)	CBLB (ENSVVUG00000021782)	ENSVVUG00000021795 #22	CCDC54 (ENSVVUG00000021808)	BBX (ENSVVUG00000021813)	CD47 (ENSVVUG00000021818)	IFT57 (ENSVVUG00000021819)	MYH15 (ENSVVUG00000021822)	CIP2A (ENSVVUG00000021833)	DZIP3 (ENSVVUG00000021904)	RETNLB (ENSVVUG00000021917)	TRAT1 (ENSVVUG00000021918)	MORC1 (ENSVVUG00000021920)	DPPA2 (ENSVVUG00000021923)	ENSVVUG00000021925	ENSVVUG00000021931	ENSVVUG00000021935	NECTIN3 (ENSVVUG00000021940)
Canidae	ANCESTRAL SPECIES																	ENSGT00940000154197.b.b.`b.b #22
Canis_lupus	ANCESTRAL SPECIES	30																ENSGT00940000154197.b.b.`b.b #22	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570.q	ENSGT00940000156337	ENSGT00940000169764	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000154451.k.b.b	ENSGT00940000158131	ENSGT00940000160665	ENSGT00510000046470.a.a.a.d.b	ENSGT00940000172584.c.b.a.a	ENSGT01070000254361
Dingo	MODERN SPECIES	308																ENSCAFG00020017950 #22	PDE5A (ENSCAFG00020017554)	FABP2 (ENSCAFG00020017519)	ENSCAFG00020017515	USP53 (ENSCAFG00020017496)	ENSCAFG00020017490	MYOZ2 (ENSCAFG00020017484)	SYNPO2 (ENSCAFG00020017481)	ENSCAFG00020017478	SEC24D (ENSCAFG00020017464)	METTL14 (ENSCAFG00020017450)	ENSCAFG00020017446	PRSS12 (ENSCAFG00020017432)	NDST3 (ENSCAFG00020017398)	TRAM1L1 (ENSCAFG00020017395)	ENSCAFG00020017392
Dog	MODERN SPECIES	25																ENSCAFG00845030376 #22	PDE5A (ENSCAFG00845030199)	FABP2 (ENSCAFG00845030144)	ENSCAFG00845030125	USP53 (ENSCAFG00845030047)	MYOZ2 (ENSCAFG00845030005)	SYNPO2 (ENSCAFG00845029946)	SEC24D (ENSCAFG00845029774)	METTL14 (ENSCAFG00845029674)	ENSCAFG00845029655	PRSS12 (ENSCAFG00845029625)	NDST3 (ENSCAFG00845029512)	TRAM1L1 (ENSCAFG00845029459)	ENSCAFG00845029353	ENSCAFG00845029324	ENSCAFG00845029266
Canidae	ANCESTRAL SPECIES	18	ENSGT00940000164168	ENSGT00440000039991 #7	ENSGT00780000122937	ENSGT00950000183312	ENSGT00940000176100.e	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.i #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b.ab #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Canis_lupus	ANCESTRAL SPECIES	10	ENSGT00940000164168	ENSGT01050000246051	ENSGT00780000122937	ENSGT00950000183312	ENSGT00940000176100.e	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.i #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b.ab #22	ENSGT00940000160047 #23	ENSGT01090000260046.e.b.b.b.b	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281.o #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36
Dog	DUPLICATION
Dog	MODERN SPECIES	144	ENSCAFG00845020965	GABRA3 (ENSCAFG00845025696)	ENSCAFG00845025642	ENSCAFG00845025623	GABRE (ENSCAFG00845025508)	ENSCAFG00845025413	ENSCAFG00845025383	CNGA2 (ENSCAFG00845025318)	FATE1 (ENSCAFG00845025266)	PRRG3 (ENSCAFG00845025199)	PASD1 (ENSCAFG00845024984)	VMA21 (ENSCAFG00845024854)	ENSCAFG00845024819	ENSCAFG00845024779	GPR50 (ENSCAFG00845024698)	S100A10 (ENSCAFG00845024667) #22	HMGB3 (ENSCAFG00845024577)	ENSCAFG00845024375	MTMR1 (ENSCAFG00845023576)	ENSCAFG00845023123	ENSCAFG00845023024	ENSCAFG00845022945	ENSCAFG00845022636	ENSCAFG00845022615	ENSCAFG00845022395	ENSCAFG00845022345	ENSCAFG00845022298	ENSCAFG00845022285	ENSCAFG00845022257	ENSCAFG00845022166	ENSCAFG00845022106
Dog	MODERN SPECIES	8	ENSCAFG00845026168	ENSCAFG00845026131	ENSCAFG00845026059	C1orf68 (ENSCAFG00845026034) #8	ENSCAFG00845025984	ENSCAFG00845025948 #12	ENSCAFG00845025920 #13	ENSCAFG00845025895 #14	ENSCAFG00845025860 #16	RPTN (ENSCAFG00845025826) #18	ENSCAFG00845025766 #19	TCHHL1 (ENSCAFG00845025618) #20	ENSCAFG00845025590	ENSCAFG00845025548	ENSCAFG00845025500 #21	S100A10 (ENSCAFG00845025458) #22	THEM4 (ENSCAFG00845025388) #23	ENSCAFG00845025367	THEM5 (ENSCAFG00845025312) #24	ENSCAFG00845025285	RORC (ENSCAFG00845025144) #25	LINGO4 (ENSCAFG00845025100) #26	TDRKH (ENSCAFG00845024938) #27	OAZ3 (ENSCAFG00845024748) #29	ENSCAFG00845024650 #30	ENSCAFG00845024612	RIIAD1 (ENSCAFG00845024568) #31	CELF3 (ENSCAFG00845024380) #32	SNX27 (ENSCAFG00845024124) #33	TUFT1 (ENSCAFG00845023851) #34	CGN (ENSCAFG00845023683)
Dingo	MODERN SPECIES	223	ENSCAFG00020009390	ENSCAFG00020009395	LCE7A (ENSCAFG00020009396)	ENSCAFG00020009400	KPRP (ENSCAFG00020009402)	C1orf68 (ENSCAFG00020009403) #8	ENSCAFG00020009418 #12	ENSCAFG00020009420 #13	ENSCAFG00020009424	ENSCAFG00020009446 #16	ENSCAFG00020009450 #16	TCHHL1 (ENSCAFG00020009462) #20	ENSCAFG00020009466	ENSCAFG00020009468	S100A11 (ENSCAFG00020009473) #21	S100A10 (ENSCAFG00020009496) #22	THEM4 (ENSCAFG00020009499) #23	ENSCAFG00020009502	THEM5 (ENSCAFG00020009506) #24	RORC (ENSCAFG00020009513) #25	LINGO4 (ENSCAFG00020009599) #26	TDRKH (ENSCAFG00020009606) #27	OAZ3 (ENSCAFG00020009650) #29	ENSCAFG00020009687 #30	RIIAD1 (ENSCAFG00020009697) #31	CELF3 (ENSCAFG00020009731) #32	SNX27 (ENSCAFG00020009876) #33	TUFT1 (ENSCAFG00020010517) #34	ENSCAFG00020010534	POGZ (ENSCAFG00020010728) #36	PSMB4 (ENSCAFG00020012881) #37
Red fox	DUPLICATION
Red fox	MODERN SPECIES	176										ENSVVUG00000013725 #16	RPTN (ENSVVUG00000013723) #18	ENSVVUG00000013722 #19	TCHHL1 (ENSVVUG00000013717) #20	ENSVVUG00000013706	ENSVVUG00000013702 #21	ENSVVUG00000013698 #22	THEM4 (ENSVVUG00000013687) #23	THEM5 (ENSVVUG00000013676) #24	RORC (ENSVVUG00000013598) #25	LINGO4 (ENSVVUG00000013594) #26	TDRKH (ENSVVUG00000013241) #27	OAZ3 (ENSVVUG00000013149) #29	MRPL9 (ENSVVUG00000013099) #30	ENSVVUG00000013087	ENSVVUG00000013083 #31	CELF3 (ENSVVUG00000013080) #32	ENSVVUG00000013078 #32	SNX27 (ENSVVUG00000013003) #33	ENSVVUG00000012997	TUFT1 (ENSVVUG00000012985) #34	ENSVVUG00000012977
Red fox	MODERN SPECIES	9	ERI3 (ENSVVUG00000007924)	ENSVVUG00000007902	ENSVVUG00000007889	TMEM53 (ENSVVUG00000007884)	ARMH1 (ENSVVUG00000007852)	KIF2C (ENSVVUG00000007840)	RPS8 (ENSVVUG00000007816)	BEST4 (ENSVVUG00000007803)	PLK3 (ENSVVUG00000007772)	TCTEX1D4 (ENSVVUG00000007762)	BTBD19 (ENSVVUG00000007755)	PTCH2 (ENSVVUG00000007736)	EIF2B3 (ENSVVUG00000007715)	HECTD3 (ENSVVUG00000007695)	UROD (ENSVVUG00000007661)	ENSVVUG00000007648 #22	ZSWIM5 (ENSVVUG00000007508)	MUTYH (ENSVVUG00000007482)	TOE1 (ENSVVUG00000007469)	TESK2 (ENSVVUG00000007462)	CCDC163 (ENSVVUG00000007444)	MMACHC (ENSVVUG00000007436)	ENSVVUG00000007433	AKR1A1 (ENSVVUG00000007404)	NASP (ENSVVUG00000007384)	CCDC17 (ENSVVUG00000007358)	GPBP1L1 (ENSVVUG00000007354)	ENSVVUG00000007350	IPP (ENSVVUG00000007334)	ENSVVUG00000007332	MAST2 (ENSVVUG00000007302)
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00780000122937	ENSGT00730000111554	ENSGT00940000161842.b	ENSGT00730000111580 #8	ENSGT00940000163498	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000170498	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.i #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Equus	ANCESTRAL SPECIES	3	ENSGT00940000161842.b.m	ENSGT00940000161842.b.n.b	ENSGT00940000161842.b.n.a.b	ENSGT00940000161842.b.n.a.a	ENSGT00940000163498	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000170498	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.i #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00390000004322.a.a.f	ENSGT00940000160649 #36
Horse	MODERN SPECIES	26	LCE4A (ENSECAG00000042459)	ENSECAG00000041350	ENSECAG00000037218	ENSECAG00000050655	ENSECAG00000054891	LCE3B (ENSECAG00000042522) #9	ENSECAG00000041610 #10	ENSECAG00000043314 #10	ENSECAG00000044665	CRNN (ENSECAG00000017658) #12	ENSECAG00000028110 #13	ENSECAG00000058901 #16	ENSECAG00000037094 #18	TCHHL1 (ENSECAG00000034035) #20	S100A11 (ENSECAG00000019069) #21	S100A10 (ENSECAG00000019382) #22	THEM4 (ENSECAG00000020127) #23	THEM5 (ENSECAG00000020807) #24	C2CD4D (ENSECAG00000028243)	RORC (ENSECAG00000000918) #25	LINGO4 (ENSECAG00000012494) #26	TDRKH (ENSECAG00000013096) #27	OAZ3 (ENSECAG00000015002) #29	MRPL9 (ENSECAG00000016263) #30	CELF3 (ENSECAG00000020365) #32	SNX27 (ENSECAG00000000614) #33	TUFT1 (ENSECAG00000011044) #34	CGN (ENSECAG00000015048)	ENSECAG00000039248	POGZ (ENSECAG00000021579) #36	PSMB4 (ENSECAG00000006692) #37
Donkey	MODERN SPECIES	17	ENSEASG00005038825	ENSEASG00005033840	LCE3B (ENSEASG00005028563) #9	ENSEASG00005025890 #10	ENSEASG00005037661 #10	ENSEASG00005037749 #12	ENSEASG00005029775 #13	ENSEASG00005035420 #18	ENSEASG00005023707	ENSEASG00005032937 #16	RPTN (ENSEASG00005037477) #18	ENSEASG00005035273 #19	ENSEASG00005031187 #19	TCHHL1 (ENSEASG00005005183) #20	ENSEASG00005005188 #21	ENSEASG00005028682 #22	ENSEASG00005005198 #23	RORC (ENSEASG00005005204) #25	LINGO4 (ENSEASG00005031153) #26	TDRKH (ENSEASG00005005213) #27	OAZ3 (ENSEASG00005005219) #29	MRPL9 (ENSEASG00005030204) #30	RIIAD1 (ENSEASG00005031539) #31	CELF3 (ENSEASG00005005254) #32	SNX27 (ENSEASG00005005260) #33	TUFT1 (ENSEASG00005005295) #34	ENSEASG00005005590	ENSEASG00005005594	POGZ (ENSEASG00005005607) #36	ENSEASG00005005615 #37	ENSEASG00005024206
Chiroptera	ANCESTRAL SPECIES	20	ENSGT00940000163019	ENSGT00730000111626	ENSGT01050000246051	ENSGT00780000122937	ENSGT00730000111554	ENSGT00940000161842.b	ENSGT00730000111580 #8	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000170498	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.i #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Megabat	MODERN SPECIES	5628																S100A10 (ENSPVAG00000015664) #22
Microchiroptera	ANCESTRAL SPECIES	21	ENSGT00730000111626	ENSGT01050000246051	ENSGT00780000122937	ENSGT00730000111554	ENSGT00940000161842.b	ENSGT00730000111580 #8	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000170498	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.i #18	ENSGT00940000164620	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Microbat	DUPLICATION
Microbat	MODERN SPECIES	943	PNPT1 (ENSMLUG00000003886)	EFEMP1 (ENSMLUG00000003898)	CCDC85A (ENSMLUG00000007767)	VRK2 (ENSMLUG00000002069)	FANCL (ENSMLUG00000002077)	BCL11A (ENSMLUG00000010117)	ENSMLUG00000030390	ENSMLUG00000014903	PAPOLG (ENSMLUG00000009853)	REL (ENSMLUG00000007454)	PUS10 (ENSMLUG00000000082)	PEX13 (ENSMLUG00000025131)	SANBR (ENSMLUG00000007627)	C2orf74 (ENSMLUG00000027969)	ENSMLUG00000003408	ENSMLUG00000027445 #22	USP34 (ENSMLUG00000003414)	XPO1 (ENSMLUG00000010670)	FAM161A (ENSMLUG00000030514)	CCT4 (ENSMLUG00000016138)	ENSMLUG00000022697	B3GNT2 (ENSMLUG00000009924)	ENSMLUG00000027762	EHBP1 (ENSMLUG00000002314)	OTX1 (ENSMLUG00000002330)	WDPCP (ENSMLUG00000002336)	MDH1 (ENSMLUG00000002352)	UGP2 (ENSMLUG00000003123)	VPS54 (ENSMLUG00000003130)	PELI1 (ENSMLUG00000003152)	ENSMLUG00000015944
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1088	ENSMLUG00000027933	ENSMLUG00000013964	ENSMLUG00000013963	ENSMLUG00000028866	SPRR4 (ENSMLUG00000013961)	ENSMLUG00000002265	LCE3B (ENSMLUG00000002269) #9	ENSMLUG00000025940	CRNN (ENSMLUG00000008478) #12	ENSMLUG00000022674 #16	RPTN (ENSMLUG00000029225) #18	ENSMLUG00000029417	ENSMLUG00000013906	TCHHL1 (ENSMLUG00000013899) #20	ENSMLUG00000014653 #21	ENSMLUG00000005271 #22	ENSMLUG00000027648 #23	THEM5 (ENSMLUG00000002239) #24	RORC (ENSMLUG00000029229) #25	LINGO4 (ENSMLUG00000002233) #26	TDRKH (ENSMLUG00000002213) #27	OAZ3 (ENSMLUG00000002207) #29	MRPL9 (ENSMLUG00000002204) #30	RIIAD1 (ENSMLUG00000029408) #31	CELF3 (ENSMLUG00000002193) #32	SNX27 (ENSMLUG00000002189) #33	TUFT1 (ENSMLUG00000002177) #34	ENSMLUG00000002171	POGZ (ENSMLUG00000002157) #36	PSMB4 (ENSMLUG00000002149) #37	ENSMLUG00000015228
Microbat	MODERN SPECIES	942	HOXD13 (ENSMLUG00000006997)	HOXD12 (ENSMLUG00000007009)	HOXD11 (ENSMLUG00000007030)	HOXD10 (ENSMLUG00000007048)	HOXD8 (ENSMLUG00000028864)	HOXD4 (ENSMLUG00000012508)	HOXD3 (ENSMLUG00000012510)	ENSMLUG00000029447	MTX2 (ENSMLUG00000015966)	ENSMLUG00000003906	NFE2L2 (ENSMLUG00000003909)	ENSMLUG00000025480	AGPS (ENSMLUG00000005113)	ENSMLUG00000005126	ENSMLUG00000005133	ENSMLUG00000028755 #22	PDE11A (ENSMLUG00000005135)	RBM45 (ENSMLUG00000005782)	OSBPL6 (ENSMLUG00000005787)	ENSMLUG00000022423	ENSMLUG00000005810	PJVK (ENSMLUG00000005814)	FKBP7 (ENSMLUG00000005816)	PLEKHA3 (ENSMLUG00000005823)	ENSMLUG00000024664	TTN (ENSMLUG00000005832)	ENSMLUG00000005976	ENSMLUG00000027856	SESTD1 (ENSMLUG00000005032)	ZNF385B (ENSMLUG00000013424)	ENSMLUG00000013437
Greater horseshoe bat	DUPLICATION
Greater horseshoe bat	DUPLICATION
Greater horseshoe bat	DUPLICATION
Greater horseshoe bat	MODERN SPECIES	14	ENSRFEG00010013856	ENSRFEG00010013832	SPRR4 (ENSRFEG00010013804)	ENSRFEG00010013574	LCE7A (ENSRFEG00010013553)	KPRP (ENSRFEG00010013203)	ENSRFEG00010013183	C1orf68 (ENSRFEG00010013146) #8	CRNN (ENSRFEG00010012881) #12	ENSRFEG00010012690 #13	ENSRFEG00010012520	ENSRFEG00010012460 #16	ENSRFEG00010012428 #19	ENSRFEG00010012331 #20	ENSRFEG00010012269 #21	ENSRFEG00010012237 #22	ENSRFEG00010012107 #23	THEM5 (ENSRFEG00010012018) #24	C2CD4D (ENSRFEG00010011998)	RORC (ENSRFEG00010011901) #25	LINGO4 (ENSRFEG00010011864) #26	TDRKH (ENSRFEG00010011740) #27	OAZ3 (ENSRFEG00010011457) #29	MRPL9 (ENSRFEG00010011321) #30	RIIAD1 (ENSRFEG00010011257) #31	CELF3 (ENSRFEG00010011151) #32	SNX27 (ENSRFEG00010010910) #33	TUFT1 (ENSRFEG00010010800) #34	ENSRFEG00010010693	POGZ (ENSRFEG00010021734) #36	PSMB4 (ENSRFEG00010021721) #37
Greater horseshoe bat	MODERN SPECIES	18	TFEC (ENSRFEG00010019376)	ENSRFEG00010019318	TES (ENSRFEG00010019300)	CAV2 (ENSRFEG00010019273)	CAV1 (ENSRFEG00010019224)	MET (ENSRFEG00010019152)	CAPZA2 (ENSRFEG00010019032)	ST7 (ENSRFEG00010018747)	WNT2 (ENSRFEG00010018681)	ASZ1 (ENSRFEG00010018560)	ENSRFEG00010018517	CFTR (ENSRFEG00010017672)	CTTNBP2 (ENSRFEG00010017601)	ENSRFEG00010017515	ENSRFEG00010017376	ENSRFEG00010017356 #22	ENSRFEG00010017340	KCND2 (ENSRFEG00010017250)	TSPAN12 (ENSRFEG00010017208)	ING3 (ENSRFEG00010017054)	CPED1 (ENSRFEG00010016992)	WNT16 (ENSRFEG00010016926)	FAM3C (ENSRFEG00010016879)	PTPRZ1 (ENSRFEG00010016626)	AASS (ENSRFEG00010016545)	FEZF1 (ENSRFEG00010016383)	RNF133 (ENSRFEG00010016316)	CADPS2 (ENSRFEG00010015967)	TAS2R16 (ENSRFEG00010015907)	SLC13A1 (ENSRFEG00010015742)	IQUB (ENSRFEG00010015538)
Greater horseshoe bat	MODERN SPECIES		ENSRFEG00010000327	LDOC1 (ENSRFEG00010000336)	ENSRFEG00010000341	ENSRFEG00010000355	SOX3 (ENSRFEG00010000375)	ENSRFEG00010000377	ENSRFEG00010000393	ENSRFEG00010000406	ATP11C (ENSRFEG00010000515)	MCF2 (ENSRFEG00010000754)	ENSRFEG00010000918	F9 (ENSRFEG00010000937)	ENSRFEG00010001019	ENSRFEG00010001096	ENSRFEG00010001105	ENSRFEG00010001121 #22	ENSRFEG00010001128	ENSRFEG00010001132	ENSRFEG00010001156	ENSRFEG00010001177	ZIC3 (ENSRFEG00010001203)	ENSRFEG00010001257	GPR101 (ENSRFEG00010001272)	ENSRFEG00010001291	ENSRFEG00010001316	RBMX (ENSRFEG00010001354)	ARHGEF6 (ENSRFEG00010001444)	CD40LG (ENSRFEG00010001594)	VGLL1 (ENSRFEG00010001625)	ENSRFEG00010001638	ENSRFEG00010001656
Greater horseshoe bat	MODERN SPECIES	2	PDHX (ENSRFEG00010004865)	CD44 (ENSRFEG00010004816)	SLC1A2 (ENSRFEG00010004715)	PAMR1 (ENSRFEG00010004646)	FJX1 (ENSRFEG00010004625)	TRIM44 (ENSRFEG00010004609)	LDLRAD3 (ENSRFEG00010004588)	COMMD9 (ENSRFEG00010004551)	PRR5L (ENSRFEG00010004515)	TRAF6 (ENSRFEG00010004489)	RAG1 (ENSRFEG00010004482)	RAG2 (ENSRFEG00010004473)	ENSRFEG00010004464	IFTAP (ENSRFEG00010004417)	ENSRFEG00010004383	ENSRFEG00010004372 #22	ENSRFEG00010004357	LRRC4C (ENSRFEG00010004345)	ENSRFEG00010004319	ENSRFEG00010004309	API5 (ENSRFEG00010004247)	TTC17 (ENSRFEG00010004131)	HSD17B12 (ENSRFEG00010004074)	ALKBH3 (ENSRFEG00010004046)	C11orf96 (ENSRFEG00010004030)	ACCSL (ENSRFEG00010004009)	ACCS (ENSRFEG00010003969)	EXT2 (ENSRFEG00010003919)	ALX4 (ENSRFEG00010003877)	CD82 (ENSRFEG00010003839)	TSPAN18 (ENSRFEG00010003813)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000154197.b.b #22
Common shrew	MODERN SPECIES	11722																S100A10 (ENSSARG00000000343) #22
Hedgehog	MODERN SPECIES	9162																S100A10 (ENSEEUG00000012443) #22
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00950000183301	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000163905 #10	ENSGT00940000163498	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Primates	ANCESTRAL SPECIES	7	ENSGT00940000161842.b	ENSGT00730000111580 #8	ENSGT00940000163498	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Strepsirrhini	ANCESTRAL SPECIES																	ENSGT00940000154197.b.b #22
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	354																ENSOGAG00000027255 #22	PBDC1 (ENSOGAG00000015205)	ENSOGAG00000030758	ZDHHC15 (ENSOGAG00000016919)	UPRT (ENSOGAG00000016773)	ABCB7 (ENSOGAG00000032555)	NEXMIF (ENSOGAG00000004432)	ENSOGAG00000033284	RLIM (ENSOGAG00000004431)	SLC16A2 (ENSOGAG00000004429)	ENSOGAG00000032021
Bushbaby	MODERN SPECIES	117	VILL (ENSOGAG00000008057)	CTDSPL (ENSOGAG00000004624)	ENSOGAG00000034113	ITGA9 (ENSOGAG00000004436)	GOLGA4 (ENSOGAG00000027706)	ENSOGAG00000029650	LRRFIP2 (ENSOGAG00000008423)	MLH1 (ENSOGAG00000008416)	EPM2AIP1 (ENSOGAG00000032395)	TRANK1 (ENSOGAG00000026991)	DCLK3 (ENSOGAG00000028781)	STAC (ENSOGAG00000007133)	ARPP21 (ENSOGAG00000009701)	PDCD6IP (ENSOGAG00000006048)	CLASP2 (ENSOGAG00000006037)	ENSOGAG00000006046 #22	UBP1 (ENSOGAG00000000962)	FBXL2 (ENSOGAG00000000961)	SUSD5 (ENSOGAG00000008438)	CRTAP (ENSOGAG00000024678)	TMPPE (ENSOGAG00000008436)	GLB1 (ENSOGAG00000008431)	CCR4 (ENSOGAG00000008430)	TRIM71 (ENSOGAG00000015458)	CNOT10 (ENSOGAG00000007295)	DYNC1LI1 (ENSOGAG00000016162)	ENSOGAG00000026982	ENSOGAG00000028641	CMTM7 (ENSOGAG00000005726)	CMTM8 (ENSOGAG00000013250)	ENSOGAG00000025400
Haplorrhini	ANCESTRAL SPECIES	7	ENSGT01090000263307	ENSGT00940000161842.b	ENSGT00940000163498	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Tarsier	MODERN SPECIES	5033														ENSTSYG00000037318	ENSTSYG00000025570 #21	S100A10 (ENSTSYG00000030364) #22	THEM4 (ENSTSYG00000005739) #23	THEM5 (ENSTSYG00000004917) #24	RORC (ENSTSYG00000010455) #25	LINGO4 (ENSTSYG00000036443) #26	TDRKH (ENSTSYG00000010405) #27	OAZ3 (ENSTSYG00000006300) #29	MRPL9 (ENSTSYG00000006296) #30	RIIAD1 (ENSTSYG00000025851) #31
Simiiformes	ANCESTRAL SPECIES	8	ENSGT00940000161842.b	ENSGT00940000163498.a	ENSGT00940000165404 #9	ENSGT00940000163498.b	ENSGT00940000163905 #10	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.gb.b.a #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Platyrrhini	ANCESTRAL SPECIES	12	ENSGT00950000183312	ENSGT00950000183278	ENSGT00950000183301	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000161842.b	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.gb.b.a.b #21	ENSGT00940000154172.gb.a #21	ENSGT00940000154197.a.a ##22	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000154489.B #35	ENSGT00940000160649 #36	ENSGT00390000000698 #37	ENSGT00390000014244
Cebidae	ANCESTRAL SPECIES	12	ENSGT00940000164168	ENSGT00950000183312	ENSGT00950000183278	ENSGT00950000183301	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000161842.b	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.gb.b.a.b #21	ENSGT00940000154172.gb.a #21	ENSGT00940000154197.a.a ##22	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000154489.B #35	ENSGT00940000160649 #36	ENSGT00390000000698 #37	ENSGT00390000014244
Marmoset	MODERN SPECIES	9	TCHHL1 (ENSCJAG00000006396) #20	ENSCJAG00000055685	CRCT1 (ENSCJAG00000048030)	ENSCJAG00000038526 #8	ENSCJAG00000069309	ENSCJAG00000069815	ENSCJAG00000079985 #10	ENSCJAG00000082018 #10	ENSCJAG00000044588 #10	ENSCJAG00000039629	ENSCJAG00000077758	ENSCJAG00000086813	ENSCJAG00000076233	ENSCJAG00000063584 #8	ENSCJAG00000021128	S100A10 (ENSCJAG00000047979) #22	THEM4 (ENSCJAG00000007646) #23	THEM5 (ENSCJAG00000042485) #24	RORC (ENSCJAG00000042586) #25	TDRKH (ENSCJAG00000007955) #27	OAZ3 (ENSCJAG00000007939) #29	MRPL9 (ENSCJAG00000007926) #30	RIIAD1 (ENSCJAG00000037171) #31	CELF3 (ENSCJAG00000007857) #32	SNX27 (ENSCJAG00000007791) #33	TUFT1 (ENSCJAG00000007748) #34	ENSCJAG00000007659	ENSCJAG00000072484	POGZ (ENSCJAG00000007565) #36	PSMB4 (ENSCJAG00000074292) #37	SELENBP1 (ENSCJAG00000007509)
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00940000154197.b.b #22
Capuchin	MODERN SPECIES	6	SLC22A1 (ENSCCAG00000030320)	IGF2R (ENSCCAG00000010739)	MAS1 (ENSCCAG00000012059)	PNLDC1 (ENSCCAG00000026232)	MRPL18 (ENSCCAG00000027672)	TCP1 (ENSCCAG00000028316)	ACAT2 (ENSCCAG00000034076)	WTAP (ENSCCAG00000021303)	SOD2 (ENSCCAG00000025254)	FNDC1 (ENSCCAG00000021952)	TAGAP (ENSCCAG00000036010)	RSPH3 (ENSCCAG00000035584)	ENSCCAG00000029457	EZR (ENSCCAG00000029069)	SYTL3 (ENSCCAG00000034836)	ENSCCAG00000007021 #22	DYNLT1 (ENSCCAG00000035503)	TMEM181 (ENSCCAG00000022105)	ENSCCAG00000013481	TULP4 (ENSCCAG00000028211)	ENSCCAG00000031330	GTF2H5 (ENSCCAG00000030667)	SERAC1 (ENSCCAG00000029699)	SYNJ2 (ENSCCAG00000025484)	SNX9 (ENSCCAG00000019868)	ZDHHC14 (ENSCCAG00000036394)	TMEM242 (ENSCCAG00000032700)	ENSCCAG00000025706	ARID1B (ENSCCAG00000027348)	NOX3 (ENSCCAG00000030330)	TFB1M (ENSCCAG00000015250)
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	156													ENSSBOG00000027899	TAFA4 (ENSSBOG00000027474)	EOGT (ENSSBOG00000025714)	ENSSBOG00000036317 #22	TMF1 (ENSSBOG00000024217)	ENSSBOG00000028598	ARL6IP5 (ENSSBOG00000033916)	LMOD3 (ENSSBOG00000031092)	FRMD4B (ENSSBOG00000029694)	MITF (ENSSBOG00000023784)	MDFIC2 (ENSSBOG00000022036)	FOXP1 (ENSSBOG00000027035)	EIF4E3 (ENSSBOG00000020647)	PROK2 (ENSSBOG00000029837)	RYBP (ENSSBOG00000024112)	SHQ1 (ENSSBOG00000021038)	ENSSBOG00000030665	GXYLT2 (ENSSBOG00000021809)	ENSSBOG00000030623
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	45	PEX11A (ENSSBOG00000031420)	WDR93 (ENSSBOG00000027681)	MESP1 (ENSSBOG00000000188)	MESP2 (ENSSBOG00000033873)	ANPEP (ENSSBOG00000024297)	ARPIN (ENSSBOG00000018686)	ENSSBOG00000035698	ZNF710 (ENSSBOG00000031952)	IDH2 (ENSSBOG00000021665)	SEMA4B (ENSSBOG00000028869)	CIB1 (ENSSBOG00000008160)	TTLL13 (ENSSBOG00000030893)	NGRN (ENSSBOG00000029844)	VPS33B (ENSSBOG00000015264)	RCCD1 (ENSSBOG00000030496)	ENSSBOG00000011485 #22	UNC45A (ENSSBOG00000030766)	HDDC3 (ENSSBOG00000035028)	ENSSBOG00000017661	MAN2A2 (ENSSBOG00000024100)	FES (ENSSBOG00000030210)	FURIN (ENSSBOG00000025759)	ENSSBOG00000019473	BLM (ENSSBOG00000030957)	CRTC3 (ENSSBOG00000012255)	IQGAP1 (ENSSBOG00000023549)	ENSSBOG00000022409	SV2B (ENSSBOG00000023396)	SLCO3A1 (ENSSBOG00000031641)	ST8SIA2 (ENSSBOG00000023341)	ENSSBOG00000000134
Bolivian squirrel monkey	MODERN SPECIES	159										CAAP1 (ENSSBOG00000023545)	PLAA (ENSSBOG00000032322)	IFT74 (ENSSBOG00000026591)	LRRC19 (ENSSBOG00000022112)	TEK (ENSSBOG00000025527)	ENSSBOG00000029262	ENSSBOG00000016954 #22	EQTN (ENSSBOG00000023038)	MOB3B (ENSSBOG00000032815)	ENSSBOG00000025861	C9orf72 (ENSSBOG00000020619)	LINGO2 (ENSSBOG00000036332)	ENSSBOG00000023911	ENSSBOG00000024405	ENSSBOG00000024689	ACO1 (ENSSBOG00000026008)	RIGI (ENSSBOG00000030627)	TOPORS (ENSSBOG00000003396)	ENSSBOG00000020460	NDUFB6 (ENSSBOG00000021167)	TMEM215 (ENSSBOG00000036309)	APTX (ENSSBOG00000025215)
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	1144															KCNN2 (ENSANAG00000024841)	ENSANAG00000024117 #22	ENSANAG00000021093	YTHDC2 (ENSANAG00000022177)	MCC (ENSANAG00000025665)	DCP2 (ENSANAG00000028729)	ENSANAG00000020898	REEP5 (ENSANAG00000031617)	SRP19 (ENSANAG00000032576)	APC (ENSANAG00000021032)	ENSANAG00000007660	ENSANAG00000031515	EPB41L4A (ENSANAG00000027415)
Mas night monkey	MODERN SPECIES	784				RPTN (ENSANAG00000038262) #15	ENSANAG00000032085 #19	TCHHL1 (ENSANAG00000031283) #20	ENSANAG00000030118 #21	ENSANAG00000037832	ENSANAG00000027772	LCE1A (ENSANAG00000028061)	ENSANAG00000025630	SPRR3 (ENSANAG00000036666)	ENSANAG00000020214	C1orf68 (ENSANAG00000030607) #8	ENSANAG00000029129	ENSANAG00000027666 #22	THEM4 (ENSANAG00000023948) #23	THEM5 (ENSANAG00000016558) #24	RORC (ENSANAG00000029747) #25	LINGO4 (ENSANAG00000006067) #26	TDRKH (ENSANAG00000021663) #27	OAZ3 (ENSANAG00000023949) #29	MRPL9 (ENSANAG00000022559) #30	RIIAD1 (ENSANAG00000019415) #31	CELF3 (ENSANAG00000030590) #32	SNX27 (ENSANAG00000034302) #33	TUFT1 (ENSANAG00000033115) #34	CGN (ENSANAG00000028207) #35	POGZ (ENSANAG00000028936) #36	PSMB4 (ENSANAG00000034196) #37	SELENBP1 (ENSANAG00000035868)
Mas night monkey	MODERN SPECIES	984	ENSANAG00000020863	TRBV7-9 (ENSANAG00000038442)	ENSANAG00000019721	TRBV16 (ENSANAG00000006214)	ENSANAG00000006270	TRBV24-1 (ENSANAG00000005245)	TRBV27 (ENSANAG00000005926)	ENSANAG00000036006	ENSANAG00000020140	ENSANAG00000020186	EPHB6 (ENSANAG00000030703)	TRPV6 (ENSANAG00000026042)	TRPV5 (ENSANAG00000024458)	LLCFC1 (ENSANAG00000019596)	KEL (ENSANAG00000022139)	ENSANAG00000014191 #22	OR9A2 (ENSANAG00000029981)	PIP (ENSANAG00000020695)	GSTK1 (ENSANAG00000038133)	TMEM139 (ENSANAG00000017815)	CASP2 (ENSANAG00000022973)	CLCN1 (ENSANAG00000024604)	FAM131B (ENSANAG00000014095)	ENSANAG00000025526	EPHA1 (ENSANAG00000036617)	ENSANAG00000019805	ENSANAG00000034570	TCAF1 (ENSANAG00000034724)	ENSANAG00000036265	OR2A2 (ENSANAG00000034657)	ARHGEF5 (ENSANAG00000022132)
Mas night monkey	MODERN SPECIES	1045									SPG21 (ENSANAG00000024557)	ANKDD1A (ENSANAG00000024207)	PLEKHO2 (ENSANAG00000032112)	PIF1 (ENSANAG00000026396)	RBPMS2 (ENSANAG00000014652)	OAZ2 (ENSANAG00000032482)	ZNF609 (ENSANAG00000036036)	ENSANAG00000020189 #22	TRIP4 (ENSANAG00000027612)	PCLAF (ENSANAG00000032895)	ENSANAG00000020004	CSNK1G1 (ENSANAG00000034685)	ENSANAG00000038250	PPIB (ENSANAG00000038282)	SNX22 (ENSANAG00000031598)	SNX1 (ENSANAG00000028586)	CIAO2A (ENSANAG00000030216)	DAPK2 (ENSANAG00000025796)	HERC1 (ENSANAG00000034456)	FBXL22 (ENSANAG00000018462)	ENSANAG00000019672	USP3 (ENSANAG00000038125)	CA12 (ENSANAG00000031578)
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00940000161842.b.d	ENSGT00940000163498.a	ENSGT00940000165404 #9	ENSGT00940000163498.b	ENSGT00940000163905 #10	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.gb.b.a #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00940000165404 #9	ENSGT00940000163498.b	ENSGT00940000163905 #10	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000164915	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000164620	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.gb.b.a #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047.s #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Gibbon	MODERN SPECIES	158																S100A10 (ENSNLEG00000013123) #22
Hominidae	ANCESTRAL SPECIES	6	ENSGT00940000165404 #9	ENSGT00940000163498.b	ENSGT00940000163905 #10	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000164915	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000164620	ENSGT00940000163983.b #19	ENSGT00940000162966 #20	ENSGT00940000154172.gb.b.a #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047.s #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Orangutan	MODERN SPECIES		LCE2B (ENSPPYG00000038561)	LCE3A (ENSPPYG00000000838)	LCE3B (ENSPPYG00000039034) #9	LCE3C (ENSPPYG00000000839)	ENSPPYG00000034690 #10	ENSPPYG00000037350 #10	CRCT1 (ENSPPYG00000000842)	LCE5A (ENSPPYG00000000843)	CRNN (ENSPPYG00000000844) #12	ENSPPYG00000000845 #13	ENSPPYG00000040029 #14	ENSPPYG00000000847 #16	ENSPPYG00000032510 #19	TCHHL1 (ENSPPYG00000034079) #20	ENSPPYG00000000848 #21	ENSPPYG00000000850 #22	THEM4 (ENSPPYG00000000851) #23	THEM5 (ENSPPYG00000000852) #24	C2CD4D (ENSPPYG00000029725)	RORC (ENSPPYG00000000853) #25	LINGO4 (ENSPPYG00000000854) #26	TDRKH (ENSPPYG00000000855) #27	OAZ3 (ENSPPYG00000000856) #29	MRPL9 (ENSPPYG00000000857) #30	ENSPPYG00000000858 #31	CELF3 (ENSPPYG00000000859) #32	SNX27 (ENSPPYG00000000860) #33	TUFT1 (ENSPPYG00000000861) #34	ENSPPYG00000000862	POGZ (ENSPPYG00000000864) #36	PSMB4 (ENSPPYG00000000865) #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00940000163905 #10	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000164915	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00390000014753.l.b	ENSGT00910000147236.b	ENSGT00940000164620	ENSGT00940000163983.b #19	ENSGT00940000162966 #20	ENSGT00940000154172.gb.b.a #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047.s #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Gorilla	MODERN SPECIES		LCE2C (ENSGGOG00000041860)	LCE2D (ENSGGOG00000039821)	LCE3B (ENSGGOG00000002199) #9	ENSGGOG00000023986 #10	LCE5A (ENSGGOG00000025178)	CRNN (ENSGGOG00000023574) #12	ENSGGOG00000024846	ENSGGOG00000008451 #13	ENSGGOG00000001834 #16	ENSGGOG00000004511 #15	ENSGGOG00000036337	ENSGGOG00000043419	ENSGGOG00000027117	TCHHL1 (ENSGGOG00000012074) #20	S100A11 (ENSGGOG00000008680) #21	ENSGGOG00000025421 #22	THEM4 (ENSGGOG00000008114) #23	THEM5 (ENSGGOG00000002230) #24	C2CD4D (ENSGGOG00000028484)	RORC (ENSGGOG00000002223) #25	LINGO4 (ENSGGOG00000004487) #26	TDRKH (ENSGGOG00000025419) #27	OAZ3 (ENSGGOG00000001904) #29	MRPL9 (ENSGGOG00000001902) #30	ENSGGOG00000003583 #31	CELF3 (ENSGGOG00000021973) #32	ENSGGOG00000023049 #32	SNX27 (ENSGGOG00000034898) #33	ENSGGOG00000026173	TUFT1 (ENSGGOG00000007971) #34	ENSGGOG00000007953
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00940000163498.b	ENSGT00940000163905.q #10	ENSGT00940000163905.r #10	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000164915	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000164620	ENSGT00940000163983.b #19	ENSGT00940000162966 #20	ENSGT00940000154172.gb.b.a #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047.s #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Pan	ANCESTRAL SPECIES		ENSGT00940000163905.q #10	ENSGT00940000163905.r #10	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000164915	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00390000014753.l.b	ENSGT00910000147236.b	ENSGT00940000163983.b #19	ENSGT00940000162966 #20	ENSGT00940000154172.gb.b.a #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047.s #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Chimpanzee	MODERN SPECIES		LCE3D (ENSPTRG00000043930) #10	LCE3E (ENSPTRG00000049653) #10	CRCT1 (ENSPTRG00000001316)	LCE5A (ENSPTRG00000001315)	CRNN (ENSPTRG00000001314) #12	ENSPTRG00000052403	FLG2 (ENSPTRG00000001313) #13	FLG (ENSPTRG00000001312) #14	HRNR (ENSPTRG00000044100) #16	RPTN (ENSPTRG00000033880) #15	ENSPTRG00000052139	ENSPTRG00000049010 #19	ENSPTRG00000046417 #19	TCHHL1 (ENSPTRG00000001305) #20	S100A11 (ENSPTRG00000001303) #21	S100A10 (ENSPTRG00000001302) #22	THEM4 (ENSPTRG00000001301) #23	THEM5 (ENSPTRG00000001300) #24	C2CD4D (ENSPTRG00000041010)	RORC (ENSPTRG00000032436) #25	LINGO4 (ENSPTRG00000001298) #26	TDRKH (ENSPTRG00000001297) #27	OAZ3 (ENSPTRG00000001296) #29	MRPL9 (ENSPTRG00000001295) #30	RIIAD1 (ENSPTRG00000001294) #31	CELF3 (ENSPTRG00000001293) #32	SNX27 (ENSPTRG00000001292) #33	TUFT1 (ENSPTRG00000001291) #34	CGN (ENSPTRG00000022663)	POGZ (ENSPTRG00000001289) #36	PSMB4 (ENSPTRG00000001288) #37
Bonobo	MODERN SPECIES		LCE3A (ENSPPAG00000014043)	LCE3B (ENSPPAG00000023046) #9	LCE3C (ENSPPAG00000013471)	LCE3D (ENSPPAG00000019158) #10	LCE3E (ENSPPAG00000024570) #10	CRCT1 (ENSPPAG00000010532)	LCE5A (ENSPPAG00000036794)	ENSPPAG00000014413	ENSPPAG00000041801 #15	ENSPPAG00000038158	ENSPPAG00000034752	ENSPPAG00000042806 #19	TCHHL1 (ENSPPAG00000042692) #20	ENSPPAG00000039848	S100A11 (ENSPPAG00000030540) #21	S100A10 (ENSPPAG00000037637) #22	THEM4 (ENSPPAG00000035727) #23	THEM5 (ENSPPAG00000030756) #24	RORC (ENSPPAG00000027120) #25	LINGO4 (ENSPPAG00000017350) #26	TDRKH (ENSPPAG00000028994) #27	OAZ3 (ENSPPAG00000013394) #29	MRPL9 (ENSPPAG00000016172) #30	ENSPPAG00000028387 #31	CELF3 (ENSPPAG00000038551) #32	SNX27 (ENSPPAG00000043259) #33	TUFT1 (ENSPPAG00000038447) #34	ENSPPAG00000041669	POGZ (ENSPPAG00000029740) #36	PSMB4 (ENSPPAG00000029520) #37	SELENBP1 (ENSPPAG00000043100)
Human	MODERN SPECIES		LCE3A (ENSG00000185962)	LCE3B (ENSG00000187238) #9	LCE3C (ENSG00000244057)	LCE3D (ENSG00000163202) #10	LCE3E (ENSG00000185966) #10	CRCT1 (ENSG00000169509)	LCE5A (ENSG00000186207)	CRNN (ENSG00000143536) #12	FLG2 (ENSG00000143520) #13	FLG (ENSG00000143631) #14	HRNR (ENSG00000197915) #16	RPTN (ENSG00000215853) #15	TCHH (ENSG00000159450)	TCHHL1 (ENSG00000182898) #20	S100A11 (ENSG00000163191) #21	S100A10 (ENSG00000197747) #22	THEM4 (ENSG00000159445) #23	THEM5 (ENSG00000196407) #24	C2CD4D (ENSG00000225556)	RORC (ENSG00000143365) #25	LINGO4 (ENSG00000213171) #26	TDRKH (ENSG00000182134) #27	OAZ3 (ENSG00000143450) #29	MRPL9 (ENSG00000143436) #30	RIIAD1 (ENSG00000178796) #31	CELF3 (ENSG00000159409) #32	SNX27 (ENSG00000143376) #33	TUFT1 (ENSG00000143367) #34	CGN (ENSG00000143375) #35	POGZ (ENSG00000143442) #36	PSMB4 (ENSG00000159377) #37
Cercopithecidae	ANCESTRAL SPECIES	22	ENSGT00940000163498.a	ENSGT00940000165404 #9	ENSGT00940000163498.b	ENSGT00940000163905 #10	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.gb.b.a.c #21	ENSGT00420000029746.e.a.b.a.a.a.a.b.b.b.a	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Rhinopithecus	ANCESTRAL SPECIES	23										ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.gb.b.a.c #21	ENSGT00420000029746.e.a.b.a.a.a.a.b.b.b.a	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37	ENSGT00390000014244
Black snub-nosed monkey	DUPLICATION
Black snub-nosed monkey	MODERN SPECIES	590											RPTN (ENSRBIG00000030933) #15	ENSRBIG00000033037	TCHHL1 (ENSRBIG00000043220) #20	ENSRBIG00000041931 #21	ENSRBIG00000034058	ENSRBIG00000036151 #22	THEM4 (ENSRBIG00000031977) #23	THEM5 (ENSRBIG00000028002) #24	RORC (ENSRBIG00000031354) #25	LINGO4 (ENSRBIG00000026745) #26	TDRKH (ENSRBIG00000044860) #27	OAZ3 (ENSRBIG00000032011) #29	MRPL9 (ENSRBIG00000036937) #30	RIIAD1 (ENSRBIG00000036425) #31	CELF3 (ENSRBIG00000043205) #32	SNX27 (ENSRBIG00000043969) #33	TUFT1 (ENSRBIG00000022910) #34	ENSRBIG00000017870	POGZ (ENSRBIG00000044811) #36	PSMB4 (ENSRBIG00000041329) #37	SELENBP1 (ENSRBIG00000025453)
Black snub-nosed monkey	MODERN SPECIES	1727									USP38 (ENSRBIG00000034798)	GAB1 (ENSRBIG00000039258)	SMARCA5 (ENSRBIG00000044644)	FREM3 (ENSRBIG00000043128)	ENSRBIG00000035543	ENSRBIG00000013183	ENSRBIG00000036198	ENSRBIG00000013900 #22
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	2622														ENSRROG00000036104 #21	ENSRROG00000031960	ENSRROG00000041423 #22	THEM4 (ENSRROG00000028759) #23	THEM5 (ENSRROG00000042268) #24	RORC (ENSRROG00000040819) #25	LINGO4 (ENSRROG00000011588) #26	TDRKH (ENSRROG00000036923) #27	OAZ3 (ENSRROG00000038133) #29	MRPL9 (ENSRROG00000031111) #30	RIIAD1 (ENSRROG00000045557) #31	CELF3 (ENSRROG00000044979) #32	SNX27 (ENSRROG00000032485) #33	TUFT1 (ENSRROG00000040599) #34	ENSRROG00000028411	POGZ (ENSRROG00000032667) #36	PSMB4 (ENSRROG00000029859) #37	SELENBP1 (ENSRROG00000037330)
Golden snub-nosed monkey	MODERN SPECIES	2324															CXorf58 (ENSRROG00000029252)	ENSRROG00000025906 #22	APOO (ENSRROG00000028881)	ENSRROG00000034497	SAT1 (ENSRROG00000042719)
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000165404 #9	ENSGT00940000163498.b	ENSGT00940000163905.u #10	ENSGT00940000163905.v #10	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.gb.b.a.c.d #21	ENSGT00420000029746.e.a.b.a.a.a.a.b.b.b.a	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Vervet Monkey	MODERN SPECIES	12	SMCP (ENSCSAG00000000039) #7	LCE6A (ENSCSAG00000000038)	ENSCSAG00000018408	ENSCSAG00000001840	KPRP (ENSCSAG00000018409)	C1orf68 (ENSCSAG00000001839) #8	ENSCSAG00000018410	LCE2A (ENSCSAG00000018411)	LCE5A (ENSCSAG00000001838)	ENSCSAG00000018412 #10	CRNN (ENSCSAG00000001837) #12	ENSCSAG00000001834 #13	RPTN (ENSCSAG00000001833) #15	ENSCSAG00000001832 #19	ENSCSAG00000001831	ENSCSAG00000001830 #22	THEM4 (ENSCSAG00000001829) #23	C2CD4D (ENSCSAG00000018413)	RORC (ENSCSAG00000001825) #25	LINGO4 (ENSCSAG00000000180) #26	TDRKH (ENSCSAG00000001820) #27	ENSCSAG00000001818	MRPL9 (ENSCSAG00000001816) #30	RIIAD1 (ENSCSAG00000001814) #31	ENSCSAG00000000179	CELF3 (ENSCSAG00000001812) #32	SNX27 (ENSCSAG00000001810) #33	TUFT1 (ENSCSAG00000001806) #34	ENSCSAG00000001804	POGZ (ENSCSAG00000001803) #36	PSMB4 (ENSCSAG00000001802) #37
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000161842.b.d.c	ENSGT00940000161842.b.d.d	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00390000014753.l.b	ENSGT00940000164620	ENSGT00940000162966 #20	ENSGT00940000154172.gb.b.a.c.d #21	ENSGT00420000029746.e.a.b.a.a.a.a.b.b.b.a	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00940000161842.b.c	ENSGT00940000161842.b.d.c	ENSGT00940000161842.b.d.d	ENSGT00940000163905.v #10	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00390000014753.l.b	ENSGT00940000164620	ENSGT00940000162966 #20	ENSGT00940000154172.gb.b.a.c.d #21	ENSGT00420000029746.e.a.b.a.a.a.a.b.b.b.a	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000154489.B #35	ENSGT00940000162698	ENSGT00940000160649 #36
Olive baboon	MODERN SPECIES		ENSPANG00000039755	LCE3A (ENSPANG00000037695)	LCE3B (ENSPANG00000048883) #9	LCE3C (ENSPANG00000043674)	ENSPANG00000041574 #10	ENSPANG00000001479	ENSPANG00000039437 #10	CRCT1 (ENSPANG00000011659)	LCE5A (ENSPANG00000018957)	CRNN (ENSPANG00000009153) #12	RPTN (ENSPANG00000030992) #15	ENSPANG00000043243 #19	TCHHL1 (ENSPANG00000034098) #20	ENSPANG00000041696 #21	ENSPANG00000007245	S100A10 (ENSPANG00000032390) #22	THEM4 (ENSPANG00000009760) #23	THEM5 (ENSPANG00000033870) #24	C2CD4D (ENSPANG00000002233)	RORC (ENSPANG00000020758) #25	LINGO4 (ENSPANG00000007807) #26	TDRKH (ENSPANG00000001986) #27	OAZ3 (ENSPANG00000011815) #29	MRPL9 (ENSPANG00000008737) #30	RIIAD1 (ENSPANG00000015348) #31	CELF3 (ENSPANG00000023526) #32	SNX27 (ENSPANG00000020431) #33	TUFT1 (ENSPANG00000003699) #34	CGN (ENSPANG00000011379) #35	POGZ (ENSPANG00000017623) #36	PSMB4 (ENSPANG00000023527) #37
Cercopithecinae_d	ANCESTRAL SPECIES	29	ENSGT00950000183312	ENSGT00950000183278	ENSGT00730000111580 #8	ENSGT00940000161842.b.d.d	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.a #15	ENSGT00390000014753.l.b	ENSGT00940000164620	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.gb.b.a.c.d #21	ENSGT00420000029746.e.a.b.a.a.a.a.b.b.b.a	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000154489.B #35	ENSGT00940000162698	ENSGT00940000160649 #36
Drill	MODERN SPECIES	411											FLG2 (ENSMLEG00000029025) #13	ENSMLEG00000036412 #19	TCHHL1 (ENSMLEG00000042735) #20	ENSMLEG00000030945 #21	ENSMLEG00000036504	S100A10 (ENSMLEG00000010423) #22	THEM4 (ENSMLEG00000041867) #23	THEM5 (ENSMLEG00000037664) #24	RORC (ENSMLEG00000041292) #25	LINGO4 (ENSMLEG00000000178) #26	TDRKH (ENSMLEG00000033882) #27	OAZ3 (ENSMLEG00000035369) #29	MRPL9 (ENSMLEG00000043239) #30	RIIAD1 (ENSMLEG00000040504) #31	CELF3 (ENSMLEG00000028006) #32	SNX27 (ENSMLEG00000036793) #33	TUFT1 (ENSMLEG00000036430) #34	ENSMLEG00000042702	POGZ (ENSMLEG00000031084) #36	PSMB4 (ENSMLEG00000020724) #37	SELENBP1 (ENSMLEG00000043655)
Sooty mangabey	DUPLICATION
Sooty mangabey	MODERN SPECIES	448	GLRA2 (ENSCATG00000036546)	FANCB (ENSCATG00000034857)	MOSPD2 (ENSCATG00000001473)	ASB9 (ENSCATG00000036620)	ASB11 (ENSCATG00000037691)	PIGA (ENSCATG00000040303)	VEGFD (ENSCATG00000034073)	PIR (ENSCATG00000017482)	BMX (ENSCATG00000044540)	ACE2 (ENSCATG00000013606)	CLTRN (ENSCATG00000032908)	CA5B (ENSCATG00000032924)	ZRSR2 (ENSCATG00000034085)	AP1S2 (ENSCATG00000039294)	GRPR (ENSCATG00000035466)	ENSCATG00000015601 #22	S100G (ENSCATG00000035072)	CTPS2 (ENSCATG00000030123)	SYAP1 (ENSCATG00000044882)	TXLNG (ENSCATG00000032410)	RBBP7 (ENSCATG00000042741)	ENSCATG00000037187	REPS2 (ENSCATG00000041359)	NHS (ENSCATG00000033217)	SCML1 (ENSCATG00000006222)	BEND2 (ENSCATG00000036336)	SCML2 (ENSCATG00000038994)	CDKL5 (ENSCATG00000041616)	RS1 (ENSCATG00000029796)	PPEF1 (ENSCATG00000043035)	ENSCATG00000037972
Sooty mangabey	MODERN SPECIES	153	SPRR4 (ENSCATG00000002632)	LCE1A (ENSCATG00000017623)	ENSCATG00000017677	C1orf68 (ENSCATG00000044855) #8	ENSCATG00000017507	CRCT1 (ENSCATG00000016190)	LCE5A (ENSCATG00000017297)	CRNN (ENSCATG00000019973) #12	FLG2 (ENSCATG00000044861) #13	RPTN (ENSCATG00000033282) #15	ENSCATG00000008029	TCHH (ENSCATG00000039707)	TCHHL1 (ENSCATG00000039351) #20	ENSCATG00000033220 #21	ENSCATG00000029227	ENSCATG00000038312 #22	THEM4 (ENSCATG00000032487) #23	THEM5 (ENSCATG00000044867) #24	C2CD4D (ENSCATG00000002143)	RORC (ENSCATG00000034157) #25	LINGO4 (ENSCATG00000021085) #26	TDRKH (ENSCATG00000041878) #27	OAZ3 (ENSCATG00000014157) #29	MRPL9 (ENSCATG00000043909) #30	RIIAD1 (ENSCATG00000021062) #31	CELF3 (ENSCATG00000030846) #32	SNX27 (ENSCATG00000034009) #33	TUFT1 (ENSCATG00000037719) #34	CGN (ENSCATG00000031118) #35	POGZ (ENSCATG00000024127) #36	PSMB4 (ENSCATG00000039167) #37
Macaca	ANCESTRAL SPECIES		ENSGT00940000161842.b.d.d.b	ENSGT00730000111580 #8	ENSGT00940000161842.b.d.d.a.a	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00390000014753.l.b	ENSGT00940000164620	ENSGT00940000162966 #20	ENSGT00420000029746.e.a.b.a.a.a.a.b.b.a	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Pig-tailed macaque	MODERN SPECIES	262	C1orf68 (ENSMNEG00000033043) #8	ENSMNEG00000035302	ENSMNEG00000033860	ENSMNEG00000023573	CRCT1 (ENSMNEG00000021397)	LCE5A (ENSMNEG00000027973)	CRNN (ENSMNEG00000041303) #12	FLG2 (ENSMNEG00000042232) #13	RPTN (ENSMNEG00000031148) #15	ENSMNEG00000032914	TCHH (ENSMNEG00000033147)	TCHHL1 (ENSMNEG00000030875) #20	ENSMNEG00000032093	ENSMNEG00000032935 #21	ENSMNEG00000041444	S100A10 (ENSMNEG00000033842) #22	ENSMNEG00000044777 #23	THEM5 (ENSMNEG00000040359) #24	C2CD4D (ENSMNEG00000020684)	RORC (ENSMNEG00000041238) #25	LINGO4 (ENSMNEG00000028221) #26	TDRKH (ENSMNEG00000021524) #27	OAZ3 (ENSMNEG00000043875) #29	MRPL9 (ENSMNEG00000020504) #30	RIIAD1 (ENSMNEG00000033990) #31	CELF3 (ENSMNEG00000044120) #32	SNX27 (ENSMNEG00000033985) #33	TUFT1 (ENSMNEG00000040638) #34	ENSMNEG00000029723	POGZ (ENSMNEG00000038332) #36	PSMB4 (ENSMNEG00000028484) #37
Macaca_a	ANCESTRAL SPECIES		ENSGT00950000183301.h.a.a	ENSGT00730000111554	ENSGT00940000161842.b.d.d.a.b	ENSGT00390000000628.w.a.a.b.a	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000153299.c.b.b.b.c.a	ENSGT00420000029746.e.a.b.a.a.a.a.b.b.a	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Crab-eating macaque	MODERN SPECIES		ENSMFAG00000058045	KPRP (ENSMFAG00000065755)	ENSMFAG00000054616	ENSMFAG00000020533	LCE5A (ENSMFAG00000030064)	CRNN (ENSMFAG00000039664) #12	ENSMFAG00000037107 #13	FLG (ENSMFAG00000052909) #14	HRNR (ENSMFAG00000047345) #16	RPTN (ENSMFAG00000054571) #15	ENSMFAG00000049602 #19	TCHHL1 (ENSMFAG00000065203) #20	ENSMFAG00000053564	ENSMFAG00000051097 #21	ENSMFAG00000049673	S100A10 (ENSMFAG00000044914) #22	THEM4 (ENSMFAG00000032182) #23	RORC (ENSMFAG00000000807) #25	LINGO4 (ENSMFAG00000029272) #26	TDRKH (ENSMFAG00000041641) #27	OAZ3 (ENSMFAG00000000682) #29	MRPL9 (ENSMFAG00000000874) #30	RIIAD1 (ENSMFAG00000042291) #31	CELF3 (ENSMFAG00000040182) #32	SNX27 (ENSMFAG00000030490) #33	TUFT1 (ENSMFAG00000034076) #34	ENSMFAG00000003431	POGZ (ENSMFAG00000043596) #36	ENSMFAG00000054881	PSMB4 (ENSMFAG00000033442) #37	SELENBP1 (ENSMFAG00000033465)
Rhesus	MODERN SPECIES		KPRP (ENSMMUG00000051816)	ENSMMUG00000049843	ENSMMUG00000049286	ENSMMUG00000050804	CRCT1 (ENSMMUG00000058456)	LCE5A (ENSMMUG00000001967)	CRNN (ENSMMUG00000009040) #12	FLG2 (ENSMMUG00000059472) #13	ENSMMUG00000054850	RPTN (ENSMMUG00000019033) #15	TCHH (ENSMMUG00000056263)	TCHHL1 (ENSMMUG00000020209) #20	ENSMMUG00000045342	ENSMMUG00000004441 #21	ENSMMUG00000042487	S100A10 (ENSMMUG00000052533) #22	THEM4 (ENSMMUG00000014361) #24	C2CD4D (ENSMMUG00000014358)	RORC (ENSMMUG00000012138) #25	LINGO4 (ENSMMUG00000012137) #26	TDRKH (ENSMMUG00000009096) #27	OAZ3 (ENSMMUG00000009095) #29	MRPL9 (ENSMMUG00000009094) #30	RIIAD1 (ENSMMUG00000016955) #31	CELF3 (ENSMMUG00000016952) #32	SNX27 (ENSMMUG00000016920) #33	TUFT1 (ENSMMUG00000021260) #34	CGN (ENSMMUG00000021259)	POGZ (ENSMMUG00000020925) #36	PSMB4 (ENSMMUG00000020924) #37	SELENBP1 (ENSMMUG00000045396)
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000161842.b	ENSGT00940000163498	ENSGT00940000163905 #10	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000170498	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Tree shrew	MODERN SPECIES	4986													ENSTBEG00000016491	ENSTBEG00000016356 #20	ENSTBEG00000016141 #21	S100A10 (ENSTBEG00000016106) #22
Glires	ANCESTRAL SPECIES		ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000161842.b	ENSGT00940000163498	ENSGT00940000163905 #10	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000170498	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00940000162189	ENSGT00940000161606	ENSGT00940000164092	ENSGT00940000163019.b	ENSGT00940000165746	ENSGT00940000164168	ENSGT00950000183278	ENSGT00950000183301	ENSGT00940000163498	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000170498	ENSGT00940000154467.b.a #16	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37	ENSGT00390000014244
Rabbit	MODERN SPECIES	4	ENSOCUG00000026830	ENSOCUG00000033134	ENSOCUG00000025593	ENSOCUG00000032235	ENSOCUG00000031729	ENSOCUG00000033213	C1orf68 (ENSOCUG00000015200) #8	ENSOCUG00000032926	ENSOCUG00000008547	CRNN (ENSOCUG00000011842) #12	ENSOCUG00000011836 #13	ENSOCUG00000037250	ENSOCUG00000033132 #16	ENSOCUG00000005205 #19	TCHHL1 (ENSOCUG00000004732) #20	ENSOCUG00000005198 #22	ENSOCUG00000005194 #23	THEM5 (ENSOCUG00000009679) #24	RORC (ENSOCUG00000022907) #25	LINGO4 (ENSOCUG00000001389) #26	ENSOCUG00000001387 #27	OAZ3 (ENSOCUG00000001385) #29	ENSOCUG00000001383 #30	RIIAD1 (ENSOCUG00000021414) #31	CELF3 (ENSOCUG00000003551) #32	SNX27 (ENSOCUG00000007428) #33	TUFT1 (ENSOCUG00000012659) #34	CGN (ENSOCUG00000012640)	POGZ (ENSOCUG00000004849) #36	PSMB4 (ENSOCUG00000015257) #37	SELENBP1 (ENSOCUG00000003371)
Rodentia	ANCESTRAL SPECIES		ENSGT00730000111580 #8	ENSGT00940000161842.b	ENSGT00940000163498	ENSGT00940000163905 #10	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000170498	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00940000164620	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000162349	ENSGT00940000162657	ENSGT00700000104637	ENSGT00730000111592	ENSGT00730000111554	ENSGT00940000161842.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00940000164620	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00940000161606	ENSGT00940000162349	ENSGT00940000162657	ENSGT00700000104637	ENSGT00730000111592	ENSGT00730000111554	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00940000164620	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Muroidea	ANCESTRAL SPECIES	6	ENSGT00780000122937	ENSGT00940000169512	ENSGT00730000111580 #8	ENSGT00940000163710	ENSGT01010000222956	ENSGT01100000265211	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00940000164620	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000163905 #10	ENSGT00940000163710.q.a	ENSGT01010000222956	ENSGT00860000136028	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00940000164620	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000154376.b.e.a	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00780000122937	ENSGT00940000167222	ENSGT01050000245068.A	ENSGT00940000161842.a.c	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000163905 #10	ENSGT01100000265211	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000154376.b.e.a	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00730000114093	ENSGT00780000122937	ENSGT00940000167222	ENSGT00940000161842.a.c	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000163905 #10	ENSGT01100000265211	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a #15	ENSGT00940000164620	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000154376.b.e.a	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	19	ENSPEMG00000002108	Kprp (ENSPEMG00000003567)	ENSPEMG00000007888	ENSPEMG00000024567	ENSPEMG00000028390	ENSPEMG00000030519	ENSPEMG00000025047 #10	Crct1 (ENSPEMG00000025851)	Lce1m (ENSPEMG00000028998)	Crnn (ENSPEMG00000015891) #12	ENSPEMG00000027135 #13	ENSPEMG00000029220 #14	ENSPEMG00000009460 #15	Tchhl1 (ENSPEMG00000023251) #20	S100a11 (ENSPEMG00000027141) #21	ENSPEMG00000028727 #22	ENSPEMG00000028073	ENSPEMG00000010771	Them4 (ENSPEMG00000017604) #23	Them5 (ENSPEMG00000009567) #24	C2cd4d (ENSPEMG00000029177)	Rorc (ENSPEMG00000019266) #25	Lingo4 (ENSPEMG00000002211) #26	Tdrkh (ENSPEMG00000011171) #27	Oaz3 (ENSPEMG00000008922) #29	Mrpl9 (ENSPEMG00000011374) #30	Riiad1 (ENSPEMG00000019003) #31	Celf3 (ENSPEMG00000001184) #32	Snx27 (ENSPEMG00000009710) #33	Tuft1 (ENSPEMG00000014366) #34	ENSPEMG00000015782
Northern American deer mouse	MODERN SPECIES	11	Hacd4 (ENSPEMG00000016283)	ENSPEMG00000013210	Focad (ENSPEMG00000000124)	ENSPEMG00000008739	ENSPEMG00000029974	Slc24a2 (ENSPEMG00000019954)	Acer2 (ENSPEMG00000020047)	ENSPEMG00000020062	Dennd4c (ENSPEMG00000020187)	Plin2 (ENSPEMG00000020242)	Haus6 (ENSPEMG00000028376)	Rraga (ENSPEMG00000012776)	Saxo1 (ENSPEMG00000000040)	Adamtsl1 (ENSPEMG00000005320)	Sh3gl2 (ENSPEMG00000010691)	ENSPEMG00000012875 #22	Cntln (ENSPEMG00000013809)	Bnc2 (ENSPEMG00000006553)	ENSPEMG00000026637	Ccdc171 (ENSPEMG00000009589)	Psip1 (ENSPEMG00000015309)	Snapc3 (ENSPEMG00000015671)	Ttc39b (ENSPEMG00000017249)	ENSPEMG00000028674	Frem1 (ENSPEMG00000007771)	Cer1 (ENSPEMG00000013498)	Zdhhc21 (ENSPEMG00000011202)	Nfib (ENSPEMG00000015036)	Mpdz (ENSPEMG00000002221)	Lurap1l (ENSPEMG00000028913)	ENSPEMG00000026523
Prairie vole	MODERN SPECIES	99	ENSMOCG00000005972	ENSMOCG00000004279	ENSMOCG00000005788	Kprp (ENSMOCG00000005848)	ENSMOCG00000005487	2310050C09Rik (ENSMOCG00000000973) #8	ENSMOCG00000008570 #10	ENSMOCG00000010107 #10	ENSMOCG00000021258 #10	ENSMOCG00000004193	Crnn (ENSMOCG00000019488) #12	ENSMOCG00000022052	ENSMOCG00000000629	ENSMOCG00000007199	Tchhl1 (ENSMOCG00000021433) #20	S100a10 (ENSMOCG00000004139) #22	ENSMOCG00000022418	ENSMOCG00000022803	ENSMOCG00000015444	ENSMOCG00000016759
Cricetinae	ANCESTRAL SPECIES	13	ENSGT01050000245068.A	ENSGT01070000254540	ENSGT01050000245068.B	ENSGT00940000161842.a.c	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000163905 #10	ENSGT01100000266463	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	714	ENSMAUG00000008992	ENSMAUG00000014317	ENSMAUG00000021993	ENSMAUG00000018162	ENSMAUG00000018011	Kprp (ENSMAUG00000009358)	ENSMAUG00000009030	2310050C09Rik (ENSMAUG00000021982) #8	ENSMAUG00000008983 #10	ENSMAUG00000009303 #10	ENSMAUG00000009142	ENSMAUG00000003498	Crnn (ENSMAUG00000001754) #12	Tchhl1 (ENSMAUG00000017940) #20	S100a11 (ENSMAUG00000019826) #21	ENSMAUG00000021385 #22
Golden Hamster	MODERN SPECIES	740							ENSMAUG00000006579	Tyrp1 (ENSMAUG00000017874)	Lurap1l (ENSMAUG00000014887)	ENSMAUG00000005222	ENSMAUG00000003146	Nfib (ENSMAUG00000007632)	Zdhhc21 (ENSMAUG00000000495)	Cer1 (ENSMAUG00000013311)	Frem1 (ENSMAUG00000014922)	ENSMAUG00000011212 #22	Ttc39b (ENSMAUG00000008949)	ENSMAUG00000002025	ENSMAUG00000008531	Psip1 (ENSMAUG00000014312)	Ccdc171 (ENSMAUG00000013269)	Bnc2 (ENSMAUG00000017038)	Cntln (ENSMAUG00000016827)
Chinese hamster chok1gshd	MODERN SPECIES	352	Kprp (ENSCGRG00001011269)	ENSCGRG00001013323	ENSCGRG00001011007	ENSCGRG00001011825 #10	ENSCGRG00001011142 #10	ENSCGRG00001011125 #10	ENSCGRG00001010698	ENSCGRG00001010946	Crnn (ENSCGRG00001009912) #12	Flg2 (ENSCGRG00001004341) #13	ENSCGRG00001024443 #14	ENSCGRG00001013639 #15	ENSCGRG00001017115 #19	Tchhl1 (ENSCGRG00001014681) #20	S100a11 (ENSCGRG00001023641) #21	S100a10 (ENSCGRG00001013243) #22
Murinae	ANCESTRAL SPECIES	5	ENSGT00960000186821	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000163710.q.a	ENSGT01010000222956	ENSGT00860000136028	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00940000164620	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000154376.b.e.a.k	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36
Mus	ANCESTRAL SPECIES	7	ENSGT00730000111554	ENSGT00950000183531.b	ENSGT00730000111580 #8	ENSGT00940000163710.q.a.b.a.a	ENSGT00940000163710.q.a.a	ENSGT01010000222956	ENSGT00860000136028	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000164620	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Mus_A	ANCESTRAL SPECIES	9	ENSGT00950000183531.b	ENSGT00730000111580 #8	ENSGT00940000163710.q.a.b.a.a	ENSGT00940000163710.q.a.a	ENSGT01010000222956	ENSGT00860000136028	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000153096.b.d.s.b	ENSGT00940000164620	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Ryukyu mouse	MODERN SPECIES	12	MGP_CAROLIEiJ_G0025289	MGP_CAROLIEiJ_G0025290	MGP_CAROLIEiJ_G0025291	MGP_CAROLIEiJ_G0025292	Crct1 (MGP_CAROLIEiJ_G0025293)	Lce1m (MGP_CAROLIEiJ_G0025294)	Crnn (MGP_CAROLIEiJ_G0025295) #12	MGP_CAROLIEiJ_G0025296 #13	Flg (MGP_CAROLIEiJ_G0025297) #14	MGP_CAROLIEiJ_G0025298	MGP_CAROLIEiJ_G0025299 #15	MGP_CAROLIEiJ_G0025300	MGP_CAROLIEiJ_G0025301	Tchhl1 (MGP_CAROLIEiJ_G0025302) #20	S100a11 (MGP_CAROLIEiJ_G0025303) #21	S100a10 (MGP_CAROLIEiJ_G0025304) #22	MGP_CAROLIEiJ_G0025305 #23	MGP_CAROLIEiJ_G0025306 #24	C2cd4d (MGP_CAROLIEiJ_G0025307)	Rorc (MGP_CAROLIEiJ_G0025308) #25	Lingo4 (MGP_CAROLIEiJ_G0025309) #26	Tdrkh (MGP_CAROLIEiJ_G0025310) #27	MGP_CAROLIEiJ_G0025311 #29	Mrpl9 (MGP_CAROLIEiJ_G0025312) #30	Riiad1 (MGP_CAROLIEiJ_G0025313) #31	Celf3 (MGP_CAROLIEiJ_G0025314) #32	Snx27 (MGP_CAROLIEiJ_G0025315) #33	Tuft1 (MGP_CAROLIEiJ_G0025316) #34	MGP_CAROLIEiJ_G0025317	MGP_CAROLIEiJ_G0025318	Pogz (MGP_CAROLIEiJ_G0025319) #36
Mus_B	ANCESTRAL SPECIES	8	ENSGT00950000183531.b	ENSGT00730000111580 #8	ENSGT00940000163710.q.a.b.a.a	ENSGT00940000163710.q.a.a	ENSGT01010000222956	ENSGT00860000136028	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000153096.b.d.s.b	ENSGT00940000164620	ENSGT00940000162966 #20	ENSGT00940000154172.kb.a #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Mouse	MODERN SPECIES	12	Lce3c (ENSMUSG00000045475)	Lce3d (ENSMUSG00000043472)	Lce3e (ENSMUSG00000074433)	Lce3f (ENSMUSG00000068885)	Crct1 (ENSMUSG00000027913)	Lce1m (ENSMUSG00000027912)	Tdpoz8 (ENSMUSG00000096879)	Crnn (ENSMUSG00000078657) #12	Flg2 (ENSMUSG00000049133) #13	Flg (ENSMUSG00000102439) #14	Hrnr (ENSMUSG00000041991) #16	Rptn (ENSMUSG00000041984) #15	Tchh (ENSMUSG00000052415)	Tchhl1 (ENSMUSG00000027908) #20	S100a11 (ENSMUSG00000027907) #21	S100a10 (ENSMUSG00000041959) #22	Tdpoz2 (ENSMUSG00000103362)	Tdpoz1 (ENSMUSG00000094084)	Gm5773 (ENSMUSG00000068879)	Tdpoz4 (ENSMUSG00000060256)	Tdpoz3 (ENSMUSG00000058005)	Tdpoz9-ps1 (ENSMUSG00000095822)	Tdpoz5 (ENSMUSG00000094163)	Tdpoz9 (ENSMUSG00000094328)	Tdpoz7 (ENSMUSG00000095251)	Spopfm2 (ENSMUSG00000074424)	Spopfm3 (ENSMUSG00000090268)	Them4 (ENSMUSG00000028145) #23	Them5 (ENSMUSG00000028148) #24	C2cd4d (ENSMUSG00000091648)	Rorc (ENSMUSG00000028150) #25
Mus_C	ANCESTRAL SPECIES	6	ENSGT00950000184448	ENSGT00730000111554	ENSGT00950000183531.b	ENSGT00730000111580 #8	ENSGT00940000163710.q.a.a	ENSGT01010000222956	ENSGT00860000136028	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000153096.b.d.s.b	ENSGT00940000164620	ENSGT00940000162966 #20	ENSGT00940000154172.kb.a #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Steppe mouse	MODERN SPECIES	2268										ENSMSIG00000013333 #16	ENSMSIG00000013325 #15	ENSMSIG00000013304	ENSMSIG00000013297 #15	Tchhl1 (ENSMSIG00000013282) #20	ENSMSIG00000013266 #21	S100a10 (ENSMSIG00000013252) #22
spretus	MODERN SPECIES	12	Lce1k (MGP_SPRETEiJ_G0026229)	Kprp (MGP_SPRETEiJ_G0026231)	Lce1l (MGP_SPRETEiJ_G0026232)	2310050C09Rik (MGP_SPRETEiJ_G0026233) #8	MGP_SPRETEiJ_G0026234	MGP_SPRETEiJ_G0026235	Crct1 (MGP_SPRETEiJ_G0026236)	Lce1m (MGP_SPRETEiJ_G0026237)	Crnn (MGP_SPRETEiJ_G0026238) #12	Flg (MGP_SPRETEiJ_G0026240) #14	MGP_SPRETEiJ_G0026241 #15	MGP_SPRETEiJ_G0026242	Tchh (MGP_SPRETEiJ_G0026243)	Tchhl1 (MGP_SPRETEiJ_G0026244) #20	MGP_SPRETEiJ_G0026245 #21	S100a10 (MGP_SPRETEiJ_G0026246) #22	Them4 (MGP_SPRETEiJ_G0026247) #23	Them5 (MGP_SPRETEiJ_G0026248) #24	C2cd4d (MGP_SPRETEiJ_G0026249)	Rorc (MGP_SPRETEiJ_G0026250) #25	Lingo4 (MGP_SPRETEiJ_G0026251) #26	Tdrkh (MGP_SPRETEiJ_G0026252) #27	MGP_SPRETEiJ_G0026253 #29	Mrpl9 (MGP_SPRETEiJ_G0026254) #30	Riiad1 (MGP_SPRETEiJ_G0026255) #31	Celf3 (MGP_SPRETEiJ_G0026256) #32	Snx27 (MGP_SPRETEiJ_G0026257) #33	MGP_SPRETEiJ_G0026258 #34	MGP_SPRETEiJ_G0026259	MGP_SPRETEiJ_G0026260	Pogz (MGP_SPRETEiJ_G0026261) #36
Shrew mouse	MODERN SPECIES	17	Lce1l (MGP_PahariEiJ_G0026731)	2310050C09Rik (MGP_PahariEiJ_G0026732) #8	MGP_PahariEiJ_G0026733	MGP_PahariEiJ_G0026734	MGP_PahariEiJ_G0026735	MGP_PahariEiJ_G0026736	MGP_PahariEiJ_G0026737	MGP_PahariEiJ_G0026738	Crct1 (MGP_PahariEiJ_G0026739)	Lce1m (MGP_PahariEiJ_G0026740)	Crnn (MGP_PahariEiJ_G0026741) #12	MGP_PahariEiJ_G0026742 #13	MGP_PahariEiJ_G0026744	Tchhl1 (MGP_PahariEiJ_G0026745) #20	S100a11 (MGP_PahariEiJ_G0026746) #21	S100a10 (MGP_PahariEiJ_G0026747) #22	Them4 (MGP_PahariEiJ_G0026748) #23	Them5 (MGP_PahariEiJ_G0026749) #24	C2cd4d (MGP_PahariEiJ_G0026750)	Rorc (MGP_PahariEiJ_G0026751) #25	Lingo4 (MGP_PahariEiJ_G0026752) #26	Tdrkh (MGP_PahariEiJ_G0026753) #27	MGP_PahariEiJ_G0026754 #29	Mrpl9 (MGP_PahariEiJ_G0026755) #30	MGP_PahariEiJ_G0026756 #31	Celf3 (MGP_PahariEiJ_G0026757) #32	Snx27 (MGP_PahariEiJ_G0026758) #33	Tuft1 (MGP_PahariEiJ_G0026759) #34	MGP_PahariEiJ_G0026760	Pogz (MGP_PahariEiJ_G0026761) #36	Psmb4 (MGP_PahariEiJ_G0026762) #37
Rat	MODERN SPECIES	11	LOC120100589 (ENSRNOG00000064953)	Lce3fl1 (ENSRNOG00000063005)	Crct1 (ENSRNOG00000009574)	Lce1m (ENSRNOG00000009581)	ENSRNOG00000065518	Crnn (ENSRNOG00000008721) #12	ENSRNOG00000064129 #13	ENSRNOG00000069536 #15	ENSRNOG00000064486 #16	Rptn (ENSRNOG00000018679) #15	Tchh (ENSRNOG00000069082) #15	Tchh (ENSRNOG00000056746) #19	Tchhl1 (ENSRNOG00000009610) #20	ENSRNOG00000065314	S100a11 (ENSRNOG00000010105) #21	S100a10 (ENSRNOG00000023226) #22	Tdpoz1-ps4 (ENSRNOG00000066364)	RGD1566337 (ENSRNOG00000063844)	LOC100911679 (ENSRNOG00000063988)	RGD1564313 (ENSRNOG00000064397)	Tdpoz2l1 (ENSRNOG00000062928)	AABR07012426.1 (ENSRNOG00000050263)	LOC120100595 (ENSRNOG00000065808)	Tdpoz1-ps13 (ENSRNOG00000063069)	Tdpoz1-ps14 (ENSRNOG00000063985)	LOC120101040 (ENSRNOG00000070497)	LOC120101042 (ENSRNOG00000064402)	LOC120101043 (ENSRNOG00000068421)	Tdpoz1-ps9 (ENSRNOG00000069915)	Tdpoz2 (ENSRNOG00000065162)	LOC102553503 (ENSRNOG00000064598)
Upper Galilee mountains blind mole rat	MODERN SPECIES	593														ENSNGAG00000015477 #15	S100a11 (ENSNGAG00000016757) #21	S100a10 (ENSNGAG00000011461) #22	Them4 (ENSNGAG00000012370) #23	Them5 (ENSNGAG00000013042) #24	C2cd4d (ENSNGAG00000013377)	Rorc (ENSNGAG00000016436) #25	Lingo4 (ENSNGAG00000016843) #26	Tdrkh (ENSNGAG00000017825) #27	Oaz3 (ENSNGAG00000019961) #29	Mrpl9 (ENSNGAG00000010578) #30	Riiad1 (ENSNGAG00000017842) #31	Celf3 (ENSNGAG00000021612) #32	Snx27 (ENSNGAG00000013411) #33	Tuft1 (ENSNGAG00000016432) #34	ENSNGAG00000012043	Pogz (ENSNGAG00000006487) #36	Psmb4 (ENSNGAG00000014782) #37
Lesser Egyptian jerboa	MODERN SPECIES	141	Pglyrp4 (ENSJJAG00000009619)	Pglyrp3 (ENSJJAG00000019546)	ENSJJAG00000005907	ENSJJAG00000009222	ENSJJAG00000005176	ENSJJAG00000007620	ENSJJAG00000022880	ENSJJAG00000014882	Kprp (ENSJJAG00000004578)	2310050C09Rik (ENSJJAG00000016312) #8	ENSJJAG00000010637	ENSJJAG00000023669	ENSJJAG00000003622	ENSJJAG00000017745 #12	S100a11 (ENSJJAG00000016706) #21	S100a10 (ENSJJAG00000015567) #22	Them4 (ENSJJAG00000010836) #23	Rorc (ENSJJAG00000009867) #25	Lingo4 (ENSJJAG00000017052) #26	Tdrkh (ENSJJAG00000000323) #27	Oaz3 (ENSJJAG00000006341) #29	Mrpl9 (ENSJJAG00000018784) #30	Riiad1 (ENSJJAG00000021268) #31	Celf3 (ENSJJAG00000020104) #32	Snx27 (ENSJJAG00000023845) #33	Tuft1 (ENSJJAG00000011616) #34	ENSJJAG00000003080	Pogz (ENSJJAG00000009420) #36	Psmb4 (ENSJJAG00000012721) #37	ENSJJAG00000006656	ENSJJAG00000023680
Kangaroo rat	DUPLICATION
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	345	ENSDORG00000028790	ENSDORG00000027976	ENSDORG00000026601	ENSDORG00000029886	ENSDORG00000029857	ENSDORG00000024714	ENSDORG00000025777	ENSDORG00000011451	Kprp (ENSDORG00000026948)	ENSDORG00000023568	ENSDORG00000026274	ENSDORG00000003644 #10	ENSDORG00000025569	Crnn (ENSDORG00000002349) #12	S100a11 (ENSDORG00000027002) #21	ENSDORG00000026060 #22	Them4 (ENSDORG00000015331) #23	Them5 (ENSDORG00000015328) #24	Rorc (ENSDORG00000015326) #25	Lingo4 (ENSDORG00000027587) #26	Tdrkh (ENSDORG00000015322) #27	Oaz3 (ENSDORG00000015321) #29	Mrpl9 (ENSDORG00000015320) #30	Celf3 (ENSDORG00000002488) #32	Snx27 (ENSDORG00000014172) #33	Tuft1 (ENSDORG00000026884) #34	ENSDORG00000007338	Pogz (ENSDORG00000025298) #36	Psmb4 (ENSDORG00000028831) #37	ENSDORG00000015968	ENSDORG00000015967
Kangaroo rat	MODERN SPECIES	337	Pla2g15 (ENSDORG00000010904)	Esrp2 (ENSDORG00000000665)	Nfatc3 (ENSDORG00000029167)	Dus2 (ENSDORG00000001654)	Ddx28 (ENSDORG00000028868)	Slc12a4 (ENSDORG00000002837)	Lcat (ENSDORG00000002836)	Psmb10 (ENSDORG00000002832)	Ctrl (ENSDORG00000025188)	Pskh1 (ENSDORG00000010706)	Nrn1l (ENSDORG00000010704)	Edc4 (ENSDORG00000010702)	ENSDORG00000027828	Thap11 (ENSDORG00000010701)	Ranbp10 (ENSDORG00000010698)	ENSDORG00000026702 #22	Gfod2 (ENSDORG00000000117)	Enkd1 (ENSDORG00000000115)	Pard6a (ENSDORG00000000114)	Carmil2 (ENSDORG00000000112)	Ctcf (ENSDORG00000000111)	Ripor1 (ENSDORG00000014643)	Agrp (ENSDORG00000013972)	Atp6v0d1 (ENSDORG00000013966)	Hsd11b2 (ENSDORG00000013965)	Zdhhc1 (ENSDORG00000003276)	Tppp3 (ENSDORG00000005871)	Lrrc36 (ENSDORG00000005869)	Kctd19 (ENSDORG00000005868)	ENSDORG00000005865	Slc9a5 (ENSDORG00000005859)
Kangaroo rat	MODERN SPECIES	339	ENSDORG00000027569	Pum2 (ENSDORG00000011453)	Sdc1 (ENSDORG00000014605)	Laptm4a (ENSDORG00000014089)	Matn3 (ENSDORG00000014087)	Wdr35 (ENSDORG00000014086)	Ttc32 (ENSDORG00000029568)	Osr1 (ENSDORG00000000798)	Nt5c1b (ENSDORG00000012516)	Rdh14 (ENSDORG00000019712)	Kcns3 (ENSDORG00000024097)	Msgn1 (ENSDORG00000003509)	Gen1 (ENSDORG00000010754)	Smc6 (ENSDORG00000010753)	Vsnl1 (ENSDORG00000024043)	ENSDORG00000026713 #22	Cyria (ENSDORG00000010274)	Mycn (ENSDORG00000009906)	Ddx1 (ENSDORG00000012847)	Nbas (ENSDORG00000012843)	Lratd1 (ENSDORG00000023584)	Trib2 (ENSDORG00000030161)	Lpin1 (ENSDORG00000010485)	Greb1 (ENSDORG00000009946)	E2f6 (ENSDORG00000013213)	Rock2 (ENSDORG00000008054)	Pqlc3 (ENSDORG00000025612)	ENSDORG00000027660	Kcnf1 (ENSDORG00000026132)	Pdia6 (ENSDORG00000003594)	Atp6v1c2 (ENSDORG00000003593)
Rodentia_A	ANCESTRAL SPECIES		ENSGT01050000246051	ENSGT01020000230889	ENSGT00780000122937	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000161842.b	ENSGT00940000163498	ENSGT00940000163905 #10	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000170498	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000154489.B #35	ENSGT00940000162698	ENSGT00940000160649 #36
Sciuridae	ANCESTRAL SPECIES		ENSGT01020000230889	ENSGT00780000122937	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000161842.b	ENSGT00940000163498	ENSGT00940000163905 #10	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.b #13	ENSGT00940000170498.a	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000163983 #19	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000154489.B #35	ENSGT00940000162698	ENSGT00940000160649 #36
Eurasian red squirrel	MODERN SPECIES		ENSSVLG00005009341	ENSSVLG00005009331	ENSSVLG00005009194	ENSSVLG00005003674 #10	ENSSVLG00005003667 #10	CRNN (ENSSVLG00005003616) #12	ENSSVLG00005003594 #13	ENSSVLG00005003582	ENSSVLG00005003567	ENSSVLG00005003502	HRNR (ENSSVLG00005003432) #16	ENSSVLG00005003410 #15	ENSSVLG00005003377 #19	ENSSVLG00005003358 #21	ENSSVLG00005003347 #21	S100A10 (ENSSVLG00005003336) #22	THEM4 (ENSSVLG00005003315) #23	THEM5 (ENSSVLG00005003303) #24	C2CD4D (ENSSVLG00005003299)	RORC (ENSSVLG00005003240) #25	LINGO4 (ENSSVLG00005003205) #26	TDRKH (ENSSVLG00005003148) #27	OAZ3 (ENSSVLG00005003077) #29	ENSSVLG00005003027 #30	RIIAD1 (ENSSVLG00005002999) #31	CELF3 (ENSSVLG00005002946) #32	SNX27 (ENSSVLG00005002849) #33	TUFT1 (ENSSVLG00005002739) #34	CGN (ENSSVLG00005002674) #35	POGZ (ENSSVLG00005002594) #36	PSMB4 (ENSSVLG00005002561) #37
Marmotini	ANCESTRAL SPECIES	33	ENSGT00940000161986	ENSGT00940000161896	ENSGT00940000163629	ENSGT00910000144375	ENSGT00910000144329	ENSGT00940000162189	ENSGT00940000161606	ENSGT00940000162349	ENSGT00940000162657	ENSGT00940000163019.a	ENSGT00940000162465 #12	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a #15	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Marmotini_b	ANCESTRAL SPECIES	77												ENSGT00940000162465 #12	ENSGT00940000154467.b.b.a #14	ENSGT00940000154467.b.a #16	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #29	ENSGT00390000008281 #30	ENSGT00390000003062 #31	ENSGT00940000154716 #32	ENSGT00950000183212.C #33	ENSGT00950000183065.B #34	ENSGT00940000162698	ENSGT00940000160649 #36	ENSGT00390000000698 #37
Squirrel	MODERN SPECIES	180	PGLYRP3 (ENSSTOG00000005008)	ENSSTOG00000008523	ENSSTOG00000006819	ENSSTOG00000032058	ENSSTOG00000022826	ENSSTOG00000000156	ENSSTOG00000030434	ENSSTOG00000033823	KPRP (ENSSTOG00000000154)	C1orf68 (ENSSTOG00000033510) #8	LCE5A (ENSSTOG00000023067)	ENSSTOG00000029937	ENSSTOG00000019712 #10	ENSSTOG00000034972	ENSSTOG00000033111	S100A10 (ENSSTOG00000023215) #22	THEM4 (ENSSTOG00000010762) #23	THEM5 (ENSSTOG00000010754) #24	RORC (ENSSTOG00000019386) #25	LINGO4 (ENSSTOG00000015241) #26	TDRKH (ENSSTOG00000006506) #27	OAZ3 (ENSSTOG00000031407) #29	RIIAD1 (ENSSTOG00000034652) #31	CELF3 (ENSSTOG00000022934) #32	SNX27 (ENSSTOG00000005289) #33	TUFT1 (ENSSTOG00000003909) #34	ENSSTOG00000003867	POGZ (ENSSTOG00000012056) #36	PSMB4 (ENSSTOG00000012054) #37	SELENBP1 (ENSSTOG00000027196)	RFX5 (ENSSTOG00000013246)
Alpin marmot	MODERN SPECIES	85	ENSMMMG00000018192	ENSMMMG00000018196	ENSMMMG00000018197	LCE7A (ENSMMMG00000018216)	C1orf68 (ENSMMMG00000018221) #8	ENSMMMG00000018223	ENSMMMG00000018241	LCE5A (ENSMMMG00000018245)	ENSMMMG00000018247	ENSMMMG00000018264 #13	ENSMMMG00000018274	ENSMMMG00000018282 #16	ENSMMMG00000018292 #16	RPTN (ENSMMMG00000018298) #15	S100A11 (ENSMMMG00000018305) #21	S100A10 (ENSMMMG00000018313) #22	THEM4 (ENSMMMG00000018374) #23	THEM5 (ENSMMMG00000018379) #24	RORC (ENSMMMG00000018387) #25	LINGO4 (ENSMMMG00000018432) #26	TDRKH (ENSMMMG00000018437) #27	OAZ3 (ENSMMMG00000018483) #29	ENSMMMG00000018501 #30	CELF3 (ENSMMMG00000018558) #32	SNX27 (ENSMMMG00000018570) #33	TUFT1 (ENSMMMG00000018579) #34	ENSMMMG00000018638	POGZ (ENSMMMG00000018654) #36	PSMB4 (ENSMMMG00000018764) #37	SELENBP1 (ENSMMMG00000018768)	RFX5 (ENSMMMG00000018801)
Hystricomorpha	ANCESTRAL SPECIES																	ENSGT00940000154197.b.b #22
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	22	WDR75 (ENSHGLG00000011577)	SLC40A1 (ENSHGLG00000008999)	ASDURF (ENSHGLG00000029891)	ENSHGLG00000032663	ENSHGLG00000039700	ENSHGLG00000040561	FLACC1 (ENSHGLG00000007412)	ENSHGLG00000037940	ENSHGLG00000004915	ENSHGLG00000004703	ENSHGLG00000034754	ENSHGLG00000003940	ENSHGLG00000002790	ENSHGLG00000042696	ENSHGLG00000008965	ENSHGLG00000040344 #22	ENSHGLG00000049153	ANKRD44 (ENSHGLG00000008625)	ENSHGLG00000008285	ENSHGLG00000038699	HSPD1 (ENSHGLG00000007927)	ENSHGLG00000042669	MOB4 (ENSHGLG00000050196)	RFTN2 (ENSHGLG00000017636)	MARS2 (ENSHGLG00000049320)	BOLL (ENSHGLG00000017562)	PLCL1 (ENSHGLG00000015970)	ENSHGLG00000043283	SATB2 (ENSHGLG00000015892)	ENSHGLG00000020697	C2orf69 (ENSHGLG00000040936)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	19	LMAN1L (ENSHGLG00000000444)	ULK3 (ENSHGLG00000000809)	SCAMP2 (ENSHGLG00000001630)	MPI (ENSHGLG00000000351)	FAM219B (ENSHGLG00000048731)	COX5A (ENSHGLG00000047174)	ENSHGLG00000047540	RPP25 (ENSHGLG00000039962)	SCAMP5 (ENSHGLG00000002763)	PPCDC (ENSHGLG00000004861)	C15orf39 (ENSHGLG00000033459)	COMMD4 (ENSHGLG00000002044)	NEIL1 (ENSHGLG00000043720)	MAN2C1 (ENSHGLG00000000690)	SIN3A (ENSHGLG00000015595)	ENSHGLG00000042955 #22	PTPN9 (ENSHGLG00000001900)	ENSHGLG00000036416	IMP3 (ENSHGLG00000047594)	SNX33 (ENSHGLG00000032746)	CSPG4 (ENSHGLG00000000788)	ENSHGLG00000002838	ENSHGLG00000001339	HMG20A (ENSHGLG00000000560)	PEAK1 (ENSHGLG00000001872)	ENSHGLG00000020096	TSPAN3 (ENSHGLG00000048829)	PSTPIP1 (ENSHGLG00000002685)	RCN2 (ENSHGLG00000040045)	SCAPER (ENSHGLG00000001955)	ISL2 (ENSHGLG00000001431)
Naked mole-rat female	MODERN SPECIES	23	CLEC4F (ENSHGLG00000015223)	CD207 (ENSHGLG00000017278)	VAX2 (ENSHGLG00000038768)	ATP6V1B1 (ENSHGLG00000034993)	ANKRD53 (ENSHGLG00000015981)	TEX261 (ENSHGLG00000047338)	ENSHGLG00000015917	ENSHGLG00000039175	ENSHGLG00000050708	ZNF638 (ENSHGLG00000015789)	DYSF (ENSHGLG00000007256)	ENSHGLG00000043383	CYP26B1 (ENSHGLG00000016604)	EXOC6B (ENSHGLG00000011639)	ENSHGLG00000039406	ENSHGLG00000032593 #22	ENSHGLG00000040821	ENSHGLG00000006121	SPR (ENSHGLG00000041182)	EMX1 (ENSHGLG00000036309)	SFXN5 (ENSHGLG00000007851)	RAB11FIP5 (ENSHGLG00000016021)	SMYD5 (ENSHGLG00000015439)	PRADC1 (ENSHGLG00000015353)	CCT7 (ENSHGLG00000011761)	FBXO41 (ENSHGLG00000010102)	EGR4 (ENSHGLG00000009021)	ENSHGLG00000039055	ENSHGLG00000044724	DUSP11 (ENSHGLG00000012958)	ENSHGLG00000012325
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	22	ENSHGLG00000000458	LRAT (ENSHGLG00000045268)	ENSHGLG00000032409	ENSHGLG00000002344	ENSHGLG00000038593	ENSHGLG00000001875	ENSHGLG00000049616	ENSHGLG00000000870	ENSHGLG00000042451	ENSHGLG00000049550	ENSHGLG00000019770	ENSHGLG00000001548	ENSHGLG00000047631	IL15 (ENSHGLG00000038275)	ENSHGLG00000007865	ENSHGLG00000042945 #22	ZNF330 (ENSHGLG00000000725)	ENSHGLG00000048416	RNF150 (ENSHGLG00000000594)	ENSHGLG00000049997	ENSHGLG00000001009	ENSHGLG00000044620	ENSHGLG00000048262	ENSHGLG00000000200	ENSHGLG00000000179	ENSHGLG00000000166	ELMOD2 (ENSHGLG00000043621)	CLGN (ENSHGLG00000000153)	SCOC (ENSHGLG00000035798)	MAML3 (ENSHGLG00000039990)	MGST2 (ENSHGLG00000040336)
Naked mole-rat female	MODERN SPECIES	26	WDTC1 (ENSHGLG00000013846)	ENSHGLG00000044722	SLC9A1 (ENSHGLG00000036829)	ENSHGLG00000047714	TENT5B (ENSHGLG00000034048)	TRNP1 (ENSHGLG00000041801)	KDF1 (ENSHGLG00000012217)	NUDC (ENSHGLG00000011404)	NR0B2 (ENSHGLG00000032117)	GPATCH3 (ENSHGLG00000012492)	GPN2 (ENSHGLG00000012257)	SFN (ENSHGLG00000033145)	ZDHHC18 (ENSHGLG00000018702)	PIGV (ENSHGLG00000019195)	ARID1A (ENSHGLG00000010530)	ENSHGLG00000033713 #22	RPS6KA1 (ENSHGLG00000013826)	ENSHGLG00000043190	DHDDS (ENSHGLG00000015297)	ENSHGLG00000050208	ENSHGLG00000043841	CRYBG2 (ENSHGLG00000014835)	ENSHGLG00000042566	UBXN11 (ENSHGLG00000014636)	SH3BGRL3 (ENSHGLG00000014565)	CEP85 (ENSHGLG00000012227)	CNKSR1 (ENSHGLG00000012930)	ENSHGLG00000012204	ZNF593 (ENSHGLG00000011938)	C1orf232 (ENSHGLG00000013042)	FAM110D (ENSHGLG00000011546)
Naked mole-rat female	MODERN SPECIES	26	CASP9 (ENSHGLG00000019310)	ENSHGLG00000016895	CTRC (ENSHGLG00000018486)	EFHD2 (ENSHGLG00000046486)	FHAD1 (ENSHGLG00000018196)	TMEM51 (ENSHGLG00000013366)	ENSHGLG00000009940	ENSHGLG00000035804	CPT2 (ENSHGLG00000003070)	ENSHGLG00000002034	ENSHGLG00000001648	LRP8 (ENSHGLG00000001818)	ENSHGLG00000041952	NDC1 (ENSHGLG00000001547)	ENSHGLG00000046232	ENSHGLG00000042903 #22	ENSHGLG00000040583	ENSHGLG00000001352	LRRC42 (ENSHGLG00000000742)	ENSHGLG00000043225	TCEANC2 (ENSHGLG00000046573)	ENSHGLG00000007958	CYB5RL (ENSHGLG00000001600)	MRPL37 (ENSHGLG00000001515)	SSBP3 (ENSHGLG00000000619)	ACOT11 (ENSHGLG00000001977)	FAM151A (ENSHGLG00000038314)	ENSHGLG00000046321	ENSHGLG00000005631	PIK3CD (ENSHGLG00000005279)	CLSTN1 (ENSHGLG00000004884)
Naked mole-rat female	MODERN SPECIES	10	ENSHGLG00000032534	TBX15 (ENSHGLG00000050081)	ENSHGLG00000038215	ENSHGLG00000042619	HSD3B1 (ENSHGLG00000033840)	ENSHGLG00000006464	ENSHGLG00000042386	ENSHGLG00000049042	ENSHGLG00000015205	ENSHGLG00000016365	ENSHGLG00000004729	ENSHGLG00000001174	ENSHGLG00000033772	ENSHGLG00000005182	ENSHGLG00000039288	ENSHGLG00000037846 #22	ENSHGLG00000038214	CHD1L (ENSHGLG00000008933)	ENSHGLG00000018478	ENSHGLG00000048596	ENSHGLG00000034080	BCL9 (ENSHGLG00000013904)	ENSHGLG00000004803	ENSHGLG00000043134	GJA5 (ENSHGLG00000037183)	ENSHGLG00000006450	GJA8 (ENSHGLG00000020482)	ENSHGLG00000008167	ENSHGLG00000009553	ENSHGLG00000049549	ENSHGLG00000041766
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	31	F8 (ENSHGLG00000034300)	ENSHGLG00000000581	MPP1 (ENSHGLG00000000629)	DKC1 (ENSHGLG00000000649)	ENSHGLG00000000701	ENSHGLG00000049532	ENSHGLG00000046464	ENSHGLG00000049566	ENSHGLG00000047737	ENSHGLG00000002010	ENSHGLG00000035389	ENSHGLG00000043323	IDS (ENSHGLG00000049970)	AFF2 (ENSHGLG00000000634)	ENSHGLG00000028863	ENSHGLG00000019716 #22	FMR1 (ENSHGLG00000000576)	ENSHGLG00000040472 #22	ENSHGLG00000045634	SLITRK2 (ENSHGLG00000007935)	ENSHGLG00000035566	ENSHGLG00000032750	ENSHGLG00000038876	ENSHGLG00000049672	ENSHGLG00000036529	ENSHGLG00000037583	ENSHGLG00000004407	ENSHGLG00000039059	SOX3 (ENSHGLG00000039208)	ENSHGLG00000047068	ATP11C (ENSHGLG00000007759)
Naked mole-rat female	MODERN SPECIES	31	MCF2 (ENSHGLG00000013161)	ENSHGLG00000009095	ATP11C (ENSHGLG00000007759)	ENSHGLG00000047068	SOX3 (ENSHGLG00000039208)	ENSHGLG00000039059	ENSHGLG00000004407	ENSHGLG00000037583	ENSHGLG00000036529	ENSHGLG00000049672	ENSHGLG00000038876	ENSHGLG00000032750	ENSHGLG00000035566	SLITRK2 (ENSHGLG00000007935)	ENSHGLG00000045634	ENSHGLG00000040472 #22	FMR1 (ENSHGLG00000000576)	ENSHGLG00000019716 #22	ENSHGLG00000028863	AFF2 (ENSHGLG00000000634)	IDS (ENSHGLG00000049970)	ENSHGLG00000043323	ENSHGLG00000035389	ENSHGLG00000002010	ENSHGLG00000047737	ENSHGLG00000049566	ENSHGLG00000046464	ENSHGLG00000049532	ENSHGLG00000000701	DKC1 (ENSHGLG00000000649)	MPP1 (ENSHGLG00000000629)
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000032329	ENSHGLG00000045854	FOXO4 (ENSHGLG00000013305)	ENSHGLG00000004894	ENSHGLG00000010744	MED12 (ENSHGLG00000005421)	NLGN3 (ENSHGLG00000009982)	GJB1 (ENSHGLG00000004743)	ZMYM3 (ENSHGLG00000014526)	NONO (ENSHGLG00000005550)	ITGB1BP2 (ENSHGLG00000015433)	ENSHGLG00000050039	ENSHGLG00000050796	ENSHGLG00000014818	ENSHGLG00000031947	ENSHGLG00000049149 #22	ENSHGLG00000040608	ENSHGLG00000007209	ENSHGLG00000042327	ENSHGLG00000050614	ENSHGLG00000008499	ENSHGLG00000034062	ENSHGLG00000006799	ENSHGLG00000037492	ENSHGLG00000050364	ENSHGLG00000047657	RTL5 (ENSHGLG00000043760)	NHSL2 (ENSHGLG00000004791)	ENSHGLG00000033358	PIN4 (ENSHGLG00000043461)	ERCC6L (ENSHGLG00000016594)
Boreoeutheria	DUPLICATION
Boreoeutheria	ANCESTRAL SPECIES																	ENSGT00940000154197.b.a.a ##22
Euarchontoglires	ANCESTRAL SPECIES																	ENSGT00940000154197.b.a.a ##22
Euarchontoglires_A	ANCESTRAL SPECIES																	ENSGT00940000154197.b.a.a ##22
Glires	ANCESTRAL SPECIES																	ENSGT00940000154197.b.a.a ##22
Rodentia	ANCESTRAL SPECIES																	ENSGT00940000154197.b.a.a ##22
Rodentia_A	ANCESTRAL SPECIES																	ENSGT00940000154197.b.a.a ##22
Hystricomorpha	ANCESTRAL SPECIES																	ENSGT00940000154197.b.a.a ##22
Naked mole-rat female	MODERN SPECIES	31	MID1IP1 (ENSHGLG00000047790)	ENSHGLG00000005272	BCOR (ENSHGLG00000004759)	ENSHGLG00000044824	ATP6AP2 (ENSHGLG00000009344)	MPC1L (ENSHGLG00000020388)	CXorf38 (ENSHGLG00000005921)	MED14 (ENSHGLG00000005145)	USP9X (ENSHGLG00000005613)	Ddx3x (ENSHGLG00000004805)	ENSHGLG00000034784	NYX (ENSHGLG00000004422)	ENSHGLG00000016669	ENSHGLG00000037147	CASK (ENSHGLG00000008006)	ENSHGLG00000047643 ##22	GPR34 (ENSHGLG00000041208)	GPR82 (ENSHGLG00000018778)	ENSHGLG00000012354	ENSHGLG00000048297	ENSHGLG00000039815	ENSHGLG00000048133	MAOB (ENSHGLG00000018385)	ENSHGLG00000018403	NDP (ENSHGLG00000008619)	ENSHGLG00000039999	ENSHGLG00000004037	ENSHGLG00000044457	ENSHGLG00000047295	ENSHGLG00000004981	KDM6A (ENSHGLG00000005358)
Laurasiatheria	ANCESTRAL SPECIES																	ENSGT00940000154197.b.a.a ##22
Laurasiatheria_a	ANCESTRAL SPECIES																	ENSGT00940000154197.b.a.a ##22
Artiodactyla	ANCESTRAL SPECIES																	ENSGT00940000154197.b.a.a ##22
Artiodactyla_a	ANCESTRAL SPECIES																	ENSGT00940000154197.b.a.a ##22
Artiodactyla_b	ANCESTRAL SPECIES																	ENSGT00940000154197.b.a.a ##22
Cetacea	ANCESTRAL SPECIES	29											ENSGT00940000163248	ENSGT00730000111626	ENSGT00940000164168	ENSGT00940000154467.b.a #16	ENSGT00940000154172.ab.a.b.a.a #21	ENSGT00940000154197.b.a.a ##22
Blue whale	MODERN SPECIES		ENSBMSG00010019114	ENSBMSG00010019095	S100A8 (ENSBMSG00010019080)	ENSBMSG00010019057	ENSBMSG00010019042	ENSBMSG00010019014	ENSBMSG00010018964	ENSBMSG00010018953	ENSBMSG00010018930	SPRR4 (ENSBMSG00010018919)	ENSBMSG00010018889	ENSBMSG00010018868	CRCT1 (ENSBMSG00010018835)	ENSBMSG00010018815 #16	ENSBMSG00010018799 #21	S100A10 (ENSBMSG00010018778) ##22	THEM4 (ENSBMSG00010018743) #23	THEM5 (ENSBMSG00010018706) #24	C2CD4D (ENSBMSG00010018697)	RORC (ENSBMSG00010018612) #25	LINGO4 (ENSBMSG00010018591) #26	TDRKH (ENSBMSG00010018475) #27	ENSBMSG00010018451	OAZ3 (ENSBMSG00010018287) #29	MRPL9 (ENSBMSG00010018243) #30	RIIAD1 (ENSBMSG00010018208) #31	CELF3 (ENSBMSG00010018090) #32	SNX27 (ENSBMSG00010017840) #33	TUFT1 (ENSBMSG00010017718) #34	CGN (ENSBMSG00010017607) #35	POGZ (ENSBMSG00010017219) #36
Boreoeutheria	ANCESTRAL SPECIES																	ENSGT00940000154197.b.a.b ##22
Euarchontoglires	ANCESTRAL SPECIES																	ENSGT00940000154197.b.a.b ##22
Euarchontoglires_A	ANCESTRAL SPECIES																	ENSGT00940000154197.b.a.b ##22
Glires	ANCESTRAL SPECIES																	ENSGT00940000154197.b.a.b ##22
Rodentia	ANCESTRAL SPECIES																	ENSGT00940000154197.b.a.b ##22
Rodentia_A	ANCESTRAL SPECIES																	ENSGT00940000154197.b.a.b ##22
Hystricomorpha	ANCESTRAL SPECIES																	ENSGT00940000154197.b.a.b ##22
Naked mole-rat female	MODERN SPECIES	10	PSMB4 (ENSHGLG00000011939) #37	POGZ (ENSHGLG00000008750) #36	ENSHGLG00000011542	TUFT1 (ENSHGLG00000014891) #34	SNX27 (ENSHGLG00000004841) #33	ENSHGLG00000006045 #32	ENSHGLG00000041725 #32	RIIAD1 (ENSHGLG00000009105) #31	MRPL9 (ENSHGLG00000044925) #30	OAZ3 (ENSHGLG00000048260) #29	TDRKH (ENSHGLG00000007478) #27	LINGO4 (ENSHGLG00000044939) #26	RORC (ENSHGLG00000012884) #25	ENSHGLG00000011973 #24	ENSHGLG00000013312 #21	ENSHGLG00000040771 ##22	ENSHGLG00000015316 #23	ENSHGLG00000034971 #20	ENSHGLG00000045102	ENSHGLG00000037105 #19	ENSHGLG00000015383 #15	ENSHGLG00000042729 #16	ENSHGLG00000040052	ENSHGLG00000035954	ENSHGLG00000048818 #13	ENSHGLG00000038619 #12	ENSHGLG00000042654	ENSHGLG00000041296	ENSHGLG00000045394	ENSHGLG00000050625	ENSHGLG00000041831