Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000165404 #14	ENSGT00940000163905	ENSGT00940000163498	ENSGT00730000113097	ENSGT00940000161842.a	ENSGT00940000162465 #15	ENSGT00940000154467.b.b.b #16	ENSGT00940000154467.b.b.a ##16	ENSGT00940000154467.a.h.a ##16	ENSGT00940000154467.b.a ##16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i #18	ENSGT00940000163983	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #25	ENSGT00940000161937 #26	ENSGT00940000163537 #27	ENSGT00940000161521 #28	ENSGT00940000162157 #29	ENSGT00940000159364 #30	ENSGT00940000161581 #32	ENSGT00390000008281 #33	ENSGT00390000003062 #34	ENSGT00940000154716 #35	ENSGT00950000183212.C #37	ENSGT00950000183065.B	ENSGT00940000162698	ENSGT00940000160649	ENSGT00390000000698
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00730000111580 #13	ENSGT00940000165404 #14	ENSGT00940000163905	ENSGT00940000163498	ENSGT00940000161842.a	ENSGT00940000162465 #15	ENSGT00940000154467.b.b.b #16	ENSGT00940000154467.b.b.a ##16	ENSGT00940000154467.a.h.a ##16	ENSGT00940000154467.b.a ##16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i #18	ENSGT00940000163983	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #25	ENSGT00940000161937 #26	ENSGT00940000163537 #27	ENSGT00940000161521 #28	ENSGT00940000162157 #29	ENSGT00940000159364 #30	ENSGT00940000161581 #32	ENSGT00390000008281 #33	ENSGT00390000003062 #34	ENSGT00940000154716 #35	ENSGT00950000183212.C #37	ENSGT00950000183065.B	ENSGT00940000162698	ENSGT00940000160649	ENSGT00390000000698
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00730000111580 #13	ENSGT00940000165404 #14	ENSGT00940000163905	ENSGT00940000163498	ENSGT00940000161842.a	ENSGT00940000162465 #15	ENSGT00940000154467.b.b.b #16	ENSGT00940000154467.b.b.a ##16	ENSGT00940000154467.a.h.a ##16	ENSGT00940000154467.b.a ##16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i #18	ENSGT00940000163983	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #25	ENSGT00940000161937 #26	ENSGT00940000163537 #27	ENSGT00940000161521 #28	ENSGT00940000162157 #29	ENSGT00940000159364 #30	ENSGT00940000161581 #32	ENSGT00390000008281 #33	ENSGT00390000003062 #34	ENSGT00940000154716 #35	ENSGT00950000183212.C #37	ENSGT00950000183065.B	ENSGT00940000162698	ENSGT00940000160649	ENSGT00390000000698
Pecora	ANCESTRAL SPECIES	2	ENSGT00730000111580 #13	ENSGT00940000165404 #14	ENSGT00940000163905	ENSGT00940000163498	ENSGT00940000161842.a	ENSGT00940000162465 #15	ENSGT00940000154467.b.b.b #16	ENSGT00940000154467.b.b.a ##16	ENSGT00940000154467.a.h.a ##16	ENSGT00940000154467.b.a ##16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i #18	ENSGT00940000163983	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #25	ENSGT00940000161937 #26	ENSGT00940000163537 #27	ENSGT00940000161521 #28	ENSGT00940000162157 #29	ENSGT00940000159364 #30	ENSGT00940000161581 #32	ENSGT00390000008281 #33	ENSGT00390000003062 #34	ENSGT00940000154716 #35	ENSGT00950000183212.C #37	ENSGT00950000183065.B	ENSGT00940000162698	ENSGT00940000160649	ENSGT00390000000698
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000165404 #14	ENSGT00940000163905	ENSGT00940000163498	ENSGT00940000162465 #15	ENSGT00940000154467.b.b.b #16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.h.a ##16	ENSGT00940000154467.b.a ##16	ENSGT00940000154467.a.i.a.a ##16	ENSGT00940000154467.b.b.a ##16	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.a.a ##22	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #25	ENSGT00940000161937 #26	ENSGT00940000163537 #27	ENSGT00940000161521 #28	ENSGT00940000162157 #29	ENSGT00940000159364 #30	ENSGT00940000161581 #32	ENSGT00390000008281 #33	ENSGT00390000003062 #34	ENSGT00940000154716 #35	ENSGT00950000183212.C #37	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183065.B	ENSGT00940000162698	ENSGT00940000160649
Bovidae	ANCESTRAL SPECIES	1	ENSGT00730000111554 #12	ENSGT00730000111580 #13	ENSGT00940000165404 #14	ENSGT00940000163905	ENSGT00940000162465 #15	ENSGT00940000154467.b.b.b #16	ENSGT00940000154467.b.b.a ##16	ENSGT00940000154467.a.h.a.a ##16	ENSGT00940000154467.a.h.a.b ##16	ENSGT00940000154467.b.a ##16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #25	ENSGT00940000161937 #26	ENSGT00940000163537 #27	ENSGT00940000161521 #28	ENSGT00940000162157 #29	ENSGT00940000159364 #30	ENSGT00950000186450 #31	ENSGT00940000161581 #32	ENSGT00390000008281 #33	ENSGT00390000003062 #34	ENSGT00940000154716 #35	ENSGT00950000183212.C #37	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183065.B	ENSGT00940000162698
Caprinae	ANCESTRAL SPECIES	2	ENSGT00780000122937	ENSGT00940000166289	ENSGT00950000183312	ENSGT00730000111580 #13	ENSGT00940000165404 #14	ENSGT00940000163905	ENSGT00940000163498	ENSGT00940000162465 #15	ENSGT00940000154467.b.b.b #16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.b.b.a ##16	ENSGT00940000154467.a.i.b #18	ENSGT00940000164620 #19	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #25	ENSGT00940000161937 #26	ENSGT00940000163537 #27	ENSGT00940000161521 #28	ENSGT00940000162157 #29	ENSGT00940000159364 #30	ENSGT00950000186450 #31	ENSGT00940000161581 #32	ENSGT00390000008281 #33	ENSGT00390000003062 #34	ENSGT00940000154716 #35	ENSGT00950000183212.C #37	ENSGT00950000183065.B	ENSGT00940000162698	ENSGT00940000160649
Goat	MODERN SPECIES	22	ENSCHIG00000013514 #7	SPRR4 (ENSCHIG00000013052) #8	ENSCHIG00000024891 #9	ENSCHIG00000007657 #10	ENSCHIG00000017937 #11	KPRP (ENSCHIG00000023870) #12	C1orf68 (ENSCHIG00000011620) #13	LCE3B (ENSCHIG00000012019) #14	CRNN (ENSCHIG00000025673) #15	ENSCHIG00000020535 #16	ENSCHIG00000026233 #17	ENSCHIG00000018492 #18	ENSCHIG00000005102 #19	TCHHL1 (ENSCHIG00000010186) #20	S100A11 (ENSCHIG00000009234) #21	S100A10 (ENSCHIG00000017889) #22	ENSCHIG00000024791 #23	ENSCHIG00000023394 #24	THEM4 (ENSCHIG00000015398) #25	THEM5 (ENSCHIG00000021133) #26	C2CD4D (ENSCHIG00000010717) #27	RORC (ENSCHIG00000005408) #28	LINGO4 (ENSCHIG00000010031) #29	TDRKH (ENSCHIG00000025326) #30	ENSCHIG00000018414 #31	OAZ3 (ENSCHIG00000024499) #32	MRPL9 (ENSCHIG00000011797) #33	RIIAD1 (ENSCHIG00000025840) #34	CELF3 (ENSCHIG00000025847) #35	ENSCHIG00000012675 #36	SNX27 (ENSCHIG00000021069) #37
Rambouillet Sheep	MODERN SPECIES		LCE1A (ENSOARG00020000260)	ENSOARG00020000228	C1orf68 (ENSOARG00020000210) #13	LCE3B (ENSOARG00020000187) #14	ENSOARG00020000176	ENSOARG00020000162	ENSOARG00020000140 ##16	ENSOARG00020000109 ##16	ENSOARG00020000102 ##16	ENSOARG00020018940 ##16	ENSOARG00020018927 ##16	ENSOARG00020018856 #18	ENSOARG00020018824 #19	TCHHL1 (ENSOARG00020018793) #20	S100A11 (ENSOARG00020018738) #21	S100A10 (ENSOARG00020018696) #22	THEM4 (ENSOARG00020018617) #25	THEM5 (ENSOARG00020018565) #26	C2CD4D (ENSOARG00020018535) #27	RORC (ENSOARG00020018249) #28	LINGO4 (ENSOARG00020018213) #29	TDRKH (ENSOARG00020018147) #30	OAZ3 (ENSOARG00020018023) #32	MRPL9 (ENSOARG00020017917) #33	RIIAD1 (ENSOARG00020017857) #34	CELF3 (ENSOARG00020017622) #35	SNX27 (ENSOARG00020016963) #37	TUFT1 (ENSOARG00020016156)	ENSOARG00020016001	POGZ (ENSOARG00020015459)	PSMB4 (ENSOARG00020015380)
Bovinae	ANCESTRAL SPECIES	1	ENSGT00950000183312	ENSGT00730000111554 #12	ENSGT00730000111580 #13	ENSGT00940000165404 #14	ENSGT00940000163905	ENSGT00940000162465 #15	ENSGT00940000154467.b.b.b #16	ENSGT00940000154467.b.b.a ##16	ENSGT00940000154467.a.h.a.a ##16	ENSGT00940000154467.b.a ##16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #25	ENSGT00940000161937 #26	ENSGT00940000163537 #27	ENSGT00940000161521 #28	ENSGT00940000162157 #29	ENSGT00940000159364 #30	ENSGT00950000186450 #31	ENSGT00940000161581 #32	ENSGT00390000008281 #33	ENSGT00390000003062 #34	ENSGT00940000154716 #35	ENSGT00950000183212.C #37	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183065.B	ENSGT00940000154489.B
American bison	MODERN SPECIES	3295	ENSBBBG00000003062	ENSBBBG00000009107	SPRR4 (ENSBBBG00000013960) #8	ENSBBBG00000003052 #9	ENSBBBG00000013950 #10	KPRP (ENSBBBG00000013941) #12	C1orf68 (ENSBBBG00000013938) #13	LCE3B (ENSBBBG00000003036) #14	ENSBBBG00000013936	ENSBBBG00000013932 #15	ENSBBBG00000003027 #16	ENSBBBG00000002896 #17	ENSBBBG00000013898	TCHHL1 (ENSBBBG00000013893) #20	ENSBBBG00000013884 #21	S100A10 (ENSBBBG00000013878) #22	THEM4 (ENSBBBG00000002992) #25	THEM5 (ENSBBBG00000002989) #26	RORC (ENSBBBG00000013856) #28	LINGO4 (ENSBBBG00000002969) #29	TDRKH (ENSBBBG00000013832) #30	ENSBBBG00000013787 #31	OAZ3 (ENSBBBG00000013776) #32	MRPL9 (ENSBBBG00000002933) #33	RIIAD1 (ENSBBBG00000013726) #34	CELF3 (ENSBBBG00000002911) #35	SNX27 (ENSBBBG00000013687) #37	ENSBBBG00000013643	TUFT1 (ENSBBBG00000013630)	ENSBBBG00000013560	CGN (ENSBBBG00000013551)
Bos	ANCESTRAL SPECIES		ENSGT00730000111554 #12	ENSGT00730000111580 #13	ENSGT00940000163498	ENSGT00970000197102	ENSGT01050000245143	ENSGT00940000162465 #15	ENSGT00940000154467.b.b.b #16	ENSGT00940000154467.b.b.a ##16	ENSGT00940000154467.a.h.a.a ##16	ENSGT00940000154467.b.a ##16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #25	ENSGT00940000161937 #26	ENSGT00940000163537 #27	ENSGT00940000161521 #28	ENSGT00940000162157 #29	ENSGT00940000159364 #30	ENSGT00950000186450 #31	ENSGT00940000161581 #32	ENSGT00390000008281 #33	ENSGT00390000003062 #34	ENSGT00940000154716 #35	ENSGT00950000183212.C #37	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183065.B	ENSGT00940000154489.B
Bos_a	ANCESTRAL SPECIES	47	ENSGT00730000111554 #12	ENSGT00730000111580 #13	ENSGT00940000163498	ENSGT00970000197102	ENSGT01050000245143	ENSGT00940000162465 #15	ENSGT00940000154467.b.b.b #16	ENSGT00940000154467.b.b.a ##16	ENSGT00940000154467.a.h.a.a ##16	ENSGT00940000154467.b.a ##16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #25	ENSGT00940000161937 #26	ENSGT00940000161521 #28	ENSGT00940000162157 #29	ENSGT00940000159364 #30	ENSGT00950000186450 #31	ENSGT00940000161581 #32	ENSGT00390000008281 #33	ENSGT00390000003062 #34	ENSGT00940000154716 #35	ENSGT00950000183212.C #37	ENSGT00950000183065.B	ENSGT00940000154489.B	ENSGT00940000162698	ENSGT00940000160649
Wild yak	MODERN SPECIES	688	ENSBMUG00000024947 #10	C1orf68 (ENSBMUG00000024927) #13	LCE3B (ENSBMUG00000024922) #14	ENSBMUG00000024916	ENSBMUG00000024912	ENSBMUG00000024905 #15	ENSBMUG00000024887 #16	ENSBMUG00000024880 ##16	ENSBMUG00000024877 ##16	ENSBMUG00000024872 ##16	ENSBMUG00000024867 #17	RPTN (ENSBMUG00000024866) #18	ENSBMUG00000024861	TCHHL1 (ENSBMUG00000024857) #20	ENSBMUG00000024843 #21	S100A10 (ENSBMUG00000024837) #22	THEM4 (ENSBMUG00000024826) #25	THEM5 (ENSBMUG00000024818) #26	RORC (ENSBMUG00000024807) #28	LINGO4 (ENSBMUG00000024776) #29	TDRKH (ENSBMUG00000024766) #30	ENSBMUG00000024752 #31	OAZ3 (ENSBMUG00000024748) #32	MRPL9 (ENSBMUG00000024735) #33	RIIAD1 (ENSBMUG00000024721) #34	CELF3 (ENSBMUG00000024707) #35	SNX27 (ENSBMUG00000024681) #37	TUFT1 (ENSBMUG00000024610)	CGN (ENSBMUG00000024577)	POGZ (ENSBMUG00000024528)	PSMB4 (ENSBMUG00000024466)
Domestic yak	MODERN SPECIES	22	KPRP (ENSBGRG00000003208) #12	C1orf68 (ENSBGRG00000003205) #13	ENSBGRG00000003177	ENSBGRG00000003168	ENSBGRG00000003159	ENSBGRG00000003154 #15	ENSBGRG00000003149 #16	ENSBGRG00000003128 ##16	ENSBGRG00000003103 ##16	ENSBGRG00000003087 #17	ENSBGRG00000003077 #18	ENSBGRG00000003029	ENSBGRG00000003014 #20	ENSBGRG00000002999	ENSBGRG00000002990 #21	S100A10 (ENSBGRG00000002962) #22	ENSBGRG00000002950	THEM4 (ENSBGRG00000002939) #25	THEM5 (ENSBGRG00000002906) #26	RORC (ENSBGRG00000002783) #28	TDRKH (ENSBGRG00000002702) #30	ENSBGRG00000002678 #31	ENSBGRG00000002657 #32	ENSBGRG00000002612 #29	RIIAD1 (ENSBGRG00000002574) #34	CELF3 (ENSBGRG00000002490) #35	SNX27 (ENSBGRG00000002390) #37	ENSBGRG00000002366	ENSBGRG00000002354	TUFT1 (ENSBGRG00000002325)	ENSBGRG00000002259
Bos_b	ANCESTRAL SPECIES	1	ENSGT00730000111580 #13	ENSGT00940000165404 #14	ENSGT00940000163905	ENSGT00970000197102	ENSGT01050000245143	ENSGT00940000162465 #15	ENSGT00940000154467.b.b.b #16	ENSGT00940000154467.a.h.a.b ##16	ENSGT00940000154467.b.a ##16	ENSGT00940000154467.a.i.a.a ##16	ENSGT00940000154467.a.h.b #17	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #25	ENSGT00940000161937 #26	ENSGT00940000163537 #27	ENSGT00940000161521 #28	ENSGT00940000162157 #29	ENSGT00940000159364 #30	ENSGT00950000186450 #31	ENSGT00940000161581 #32	ENSGT00390000008281 #33	ENSGT00390000003062 #34	ENSGT00940000154716 #35	ENSGT00950000183212.C #37	ENSGT00950000182891.a.a.b.a.a.a.b.a.b	ENSGT00950000183065.B	ENSGT00940000154539.b.u
Cow	MODERN SPECIES	22	ENSBTAG00000053743	ENSBTAG00000054620	C3H1orf68 (ENSBTAG00000046138) #13	ENSBTAG00000050431	CRCT1 (ENSBTAG00000008700)	ENSBTAG00000032446	CRNN (ENSBTAG00000054069) #15	ENSBTAG00000054258 #16	ENSBTAG00000054333 ##16	ENSBTAG00000048997 ##16	ENSBTAG00000039357 #17	RPTN (ENSBTAG00000039260) #18	TCHH (ENSBTAG00000053103) #19	TCHHL1 (ENSBTAG00000015854) #20	S100A11 (ENSBTAG00000015145) #21	S100A10 (ENSBTAG00000015147) #22	THEM4 (ENSBTAG00000004772) #25	ENSBTAG00000051270	THEM5 (ENSBTAG00000000690) #26	C2CD4D (ENSBTAG00000047528) #27	RORC (ENSBTAG00000017405) #28	LINGO4 (ENSBTAG00000040596) #29	TDRKH (ENSBTAG00000021594) #30	ENSBTAG00000050352 #31	OAZ3 (ENSBTAG00000021591) #32	MRPL9 (ENSBTAG00000000797) #33	CELF3 (ENSBTAG00000019131) #35	SNX27 (ENSBTAG00000001942) #37	ENSBTAG00000054946	TUFT1 (ENSBTAG00000017566)	ENSBTAG00000024407
Hybrid Bos Indicus	MODERN SPECIES	22	LCE1A (ENSBIXG00005007992)	C1orf68 (ENSBIXG00005007957) #13	LCE3B (ENSBIXG00005000042) #14	ENSBIXG00005007950	ENSBIXG00005007945	ENSBIXG00005007940	ENSBIXG00005007930 #15	ENSBIXG00005005284 #16	ENSBIXG00005029242 #16	ENSBIXG00005001535 ##16	ENSBIXG00005001542 ##16	ENSBIXG00005001545 #18	ENSBIXG00005001555	TCHHL1 (ENSBIXG00005001560) #20	ENSBIXG00005005274 #21	S100A10 (ENSBIXG00005029229) #22	THEM4 (ENSBIXG00005005256) #25	ENSBIXG00005001633	THEM5 (ENSBIXG00005029208) #26	C2CD4D (ENSBIXG00005001695) #27	RORC (ENSBIXG00005001718) #28	LINGO4 (ENSBIXG00005001805) #29	TDRKH (ENSBIXG00005029148) #30	ENSBIXG00005005150 #31	OAZ3 (ENSBIXG00005001942) #32	MRPL9 (ENSBIXG00005005138) #33	RIIAD1 (ENSBIXG00005001997) #34	CELF3 (ENSBIXG00005005120) #35	SNX27 (ENSBIXG00005005088) #37	ENSBIXG00005005039	TUFT1 (ENSBIXG00005028855)
Siberian musk deer	MODERN SPECIES	1243				ENSMMSG00000020455	ENSMMSG00000020485	ENSMMSG00000020597	ENSMMSG00000020612	ENSMMSG00000020304	YEATS4 (ENSMMSG00000020324)	FRS2 (ENSMMSG00000020358)	CCT2 (ENSMMSG00000020398)	LRRC10 (ENSMMSG00000020422)	BEST3 (ENSMMSG00000020449)	RAB3IP (ENSMMSG00000020870)	MYRFL (ENSMMSG00000021224)	ENSMMSG00000021405 #22	CNOT2 (ENSMMSG00000021430)	KCNMB4 (ENSMMSG00000021522)	ENSMMSG00000021535	PTPRB (ENSMMSG00000021623)	PTPRR (ENSMMSG00000022063)	ENSMMSG00000022228
Yarkand deer	MODERN SPECIES	12	ENSCHYG00000019176	ENSCHYG00000019223	KPRP (ENSCHYG00000019359) #12	LCE3B (ENSCHYG00000019507) #14	ENSCHYG00000019532	ENSCHYG00000019568	ENSCHYG00000005111	ENSCHYG00000005119	LCE5A (ENSCHYG00000005138)	CRNN (ENSCHYG00000005156) #15	ENSCHYG00000005180 #16	ENSCHYG00000005225 ##16	ENSCHYG00000005265	TCHHL1 (ENSCHYG00000005278) #20	ENSCHYG00000005300 #21	S100A10 (ENSCHYG00000005318) #22	THEM4 (ENSCHYG00000005358) #25	THEM5 (ENSCHYG00000005402) #26	C2CD4D (ENSCHYG00000005436) #27	RORC (ENSCHYG00000005468) #28	LINGO4 (ENSCHYG00000005555) #29	TDRKH (ENSCHYG00000005624) #30	OAZ3 (ENSCHYG00000005747) #32	MRPL9 (ENSCHYG00000005891) #33	RIIAD1 (ENSCHYG00000006033) #34	CELF3 (ENSCHYG00000006085) #35	SNX27 (ENSCHYG00000006199) #37	TUFT1 (ENSCHYG00000006362)	ENSCHYG00000006682	POGZ (ENSCHYG00000006826)	PSMB4 (ENSCHYG00000006978)
Cetacea	ANCESTRAL SPECIES		ENSGT00940000160475	ENSGT00940000161854	ENSGT00940000161706	ENSGT00390000000920	ENSGT00940000163114	ENSGT00940000161959	ENSGT00940000161276.C	ENSGT00940000161986	ENSGT00940000161896	ENSGT00910000144329	ENSGT00940000162189	ENSGT00940000161606	ENSGT00940000162657	ENSGT00940000154467.a.h.a ##16	ENSGT00940000154172.ab.a.b.a.b #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #25	ENSGT00940000161937 #26	ENSGT00940000163537 #27	ENSGT00940000161521 #28	ENSGT00940000162157 #29	ENSGT00940000159364 #30	ENSGT00940000161581 #32	ENSGT00390000008281 #33	ENSGT00390000003062 #34	ENSGT00940000154716 #35	ENSGT00950000183212.C #37	ENSGT00950000183065.B	ENSGT00940000162698	ENSGT00940000160649	ENSGT00390000000698
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000161706	ENSGT00390000000920	ENSGT00940000163114	ENSGT00940000161959	ENSGT00940000161276.C	ENSGT00940000161986	ENSGT00940000161896	ENSGT00910000144329	ENSGT00940000162189	ENSGT00940000161606	ENSGT00940000162657	ENSGT00940000163248	ENSGT00940000164168 #9	ENSGT00940000154467.a.h.a ##16	ENSGT00940000154172.ab.a.b.a.b #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #25	ENSGT00940000161937 #26	ENSGT00940000163537 #27	ENSGT00940000161521 #28	ENSGT00940000162157 #29	ENSGT00940000159364 #30	ENSGT00940000161581 #32	ENSGT00390000008281 #33	ENSGT00390000003062 #34	ENSGT00940000154716 #35	ENSGT00950000183212.C #37	ENSGT00950000183065.B	ENSGT00940000162698	ENSGT00940000160649	ENSGT00390000000698
Sperm whale	MODERN SPECIES	15	NUP210L (ENSPCTG00005015439)	NPR1 (ENSPCTG00005015896)	INTS3 (ENSPCTG00005016167)	SLC27A3 (ENSPCTG00005016261)	GATAD2B (ENSPCTG00005016424)	ENSPCTG00005016521	S100A8 (ENSPCTG00005016557)	S100A12 (ENSPCTG00005016598)	S100A9 (ENSPCTG00005016642)	ENSPCTG00005016678	ENSPCTG00005016724	ENSPCTG00005016816	ENSPCTG00005016869	IVL (ENSPCTG00005017017) #9	S100A11 (ENSPCTG00005017173) #21	S100A10 (ENSPCTG00005017205) #22	THEM4 (ENSPCTG00005017250) #25	TUFT1 (ENSPCTG00005017363)	SNX27 (ENSPCTG00005017684) #37	CELF3 (ENSPCTG00005017933) #35	RIIAD1 (ENSPCTG00005018184) #34	MRPL9 (ENSPCTG00005018221) #33	OAZ3 (ENSPCTG00005018289) #32	TDRKH (ENSPCTG00005018417) #30	POGZ (ENSPCTG00005018518)	PSMB4 (ENSPCTG00005018741)	ENSPCTG00005018784	SELENBP1 (ENSPCTG00005018804)	RFX5 (ENSPCTG00005019016)	PI4KB (ENSPCTG00005019046)	PSMD4 (ENSPCTG00005019075)
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00940000160475	ENSGT00940000161854	ENSGT00940000161706	ENSGT00390000000920	ENSGT00940000163114	ENSGT00940000161959	ENSGT00940000161276.C	ENSGT00940000161986	ENSGT00940000161896	ENSGT00910000144329	ENSGT00940000162189	ENSGT00940000161606	ENSGT00940000162657	ENSGT00940000154467.a.h.a ##16	ENSGT00940000154172.ab.a.b.a.b #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #25	ENSGT00940000161937 #26	ENSGT00940000163537 #27	ENSGT00940000161521 #28	ENSGT00940000162157 #29	ENSGT00940000159364 #30	ENSGT00940000161581 #32	ENSGT00390000008281 #33	ENSGT00390000003062 #34	ENSGT00940000154716 #35	ENSGT00950000183212.C #37	ENSGT00950000183065.B	ENSGT00940000162698	ENSGT00940000160649	ENSGT00390000000698
Dolphin	MODERN SPECIES	4431																S100A10 (ENSTTRG00000008647) #22
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000161854	ENSGT00940000161706	ENSGT00390000000920	ENSGT00940000163114	ENSGT00940000161959	ENSGT00940000161276.C	ENSGT00940000161986	ENSGT00940000161896	ENSGT00910000144329	ENSGT00940000162189	ENSGT00940000161606	ENSGT00940000162657	ENSGT00390000009110.`b.a	ENSGT00940000154467.a.h.a ##16	ENSGT00940000154172.ab.a.b.a.b #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #25	ENSGT00940000161937 #26	ENSGT00940000163537 #27	ENSGT00940000161521 #28	ENSGT00940000162157 #29	ENSGT00940000159364 #30	ENSGT00940000161581 #32	ENSGT00390000008281 #33	ENSGT00390000003062 #34	ENSGT00940000154716 #35	ENSGT00950000183212.C #37	ENSGT00950000183065.B	ENSGT00940000162698	ENSGT00940000160649	ENSGT00390000000698
Vaquita	MODERN SPECIES		S100A16 (ENSPSNG00000001392)	ENSPSNG00000001377	S100A4 (ENSPSNG00000001347)	S100A5 (ENSPSNG00000001323)	S100A6 (ENSPSNG00000001310)	S100A8 (ENSPSNG00000001301)	S100A12 (ENSPSNG00000001285)	S100A9 (ENSPSNG00000001270)	ENSPSNG00000001247	ENSPSNG00000001227	ENSPSNG00000001169	ENSPSNG00000001131 #9	ENSPSNG00000001116	ENSPSNG00000001017 ##16	ENSPSNG00000000955 #21	ENSPSNG00000000934 #22	THEM4 (ENSPSNG00000000910) #25	THEM5 (ENSPSNG00000000888) #26	C2CD4D (ENSPSNG00000000879) #27	RORC (ENSPSNG00000000836) #28	LINGO4 (ENSPSNG00000000787) #29	TDRKH (ENSPSNG00000000758) #30	OAZ3 (ENSPSNG00000000680) #32	MRPL9 (ENSPSNG00000000615) #33	RIIAD1 (ENSPSNG00000000589) #34	CELF3 (ENSPSNG00000000542) #35	ENSPSNG00000000510	SNX27 (ENSPSNG00000000477) #37	TUFT1 (ENSPSNG00000000346)	ENSPSNG00000000227	POGZ (ENSPSNG00000000153)
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000161854	ENSGT00940000161706	ENSGT00390000000920	ENSGT00940000163114	ENSGT00940000161959	ENSGT00940000161276.C	ENSGT00940000161986	ENSGT00940000161896	ENSGT00910000144329	ENSGT00940000162189	ENSGT00940000161606	ENSGT00390000009110.`b.a	ENSGT00780000122937	ENSGT00940000154467.a.h.a ##16	ENSGT00940000154172.ab.a.b.a.b #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #25	ENSGT00940000161937 #26	ENSGT00940000163537 #27	ENSGT00940000161521 #28	ENSGT00940000162157 #29	ENSGT00940000159364 #30	ENSGT00940000161581 #32	ENSGT00390000008281 #33	ENSGT00390000003062 #34	ENSGT00940000154716 #35	ENSGT00950000183212.C #37	ENSGT00950000183065.B	ENSGT00940000162698	ENSGT00940000160649	ENSGT00390000000698
Beluga whale	MODERN SPECIES	99													LCE7A (ENSDLEG00000010318)	ENSDLEG00000010357 ##16	ENSDLEG00000010490 #21	S100A10 (ENSDLEG00000010501) #22	THEM4 (ENSDLEG00000010507) #25	THEM5 (ENSDLEG00000010525) #26	C2CD4D (ENSDLEG00000010546) #27	RORC (ENSDLEG00000010552) #28	LINGO4 (ENSDLEG00000010572) #29	TDRKH (ENSDLEG00000010583) #30	OAZ3 (ENSDLEG00000010629) #32	MRPL9 (ENSDLEG00000010649) #33	RIIAD1 (ENSDLEG00000010670) #34	CELF3 (ENSDLEG00000010719) #35	SNX27 (ENSDLEG00000011126) #37	TUFT1 (ENSDLEG00000011162)	ENSDLEG00000011272	POGZ (ENSDLEG00000011330)	PSMB4 (ENSDLEG00000011388)
Narwhal	MODERN SPECIES	304	ENSMMNG00015001867	S100A3 (ENSMMNG00015001881)	S100A4 (ENSMMNG00015001896)	S100A5 (ENSMMNG00015001912)	S100A6 (ENSMMNG00015001928)	S100A8 (ENSMMNG00015001948)	S100A12 (ENSMMNG00015001965)	S100A9 (ENSMMNG00015001982)	ENSMMNG00015001997	PRR9 (ENSMMNG00015002010)	ENSMMNG00015002057	ENSMMNG00015002081 #7	LCE7A (ENSMMNG00015002124)	ENSMMNG00015002275 ##16	ENSMMNG00015002355 #21	S100A10 (ENSMMNG00015002372) #22	THEM4 (ENSMMNG00015002395) #25	THEM5 (ENSMMNG00015002421) #26	C2CD4D (ENSMMNG00015002439) #27	RORC (ENSMMNG00015002466) #28	LINGO4 (ENSMMNG00015002524) #29	TDRKH (ENSMMNG00015002542) #30	OAZ3 (ENSMMNG00015002678) #32	MRPL9 (ENSMMNG00015002723) #33	RIIAD1 (ENSMMNG00015002736) #34	CELF3 (ENSMMNG00015002770) #35	SNX27 (ENSMMNG00015002820) #37	ENSMMNG00015002872	TUFT1 (ENSMMNG00015002908)	ENSMMNG00015003029	POGZ (ENSMMNG00015003154)
Camelidae	ANCESTRAL SPECIES	6	ENSGT00910000144329	ENSGT00940000162189	ENSGT00940000161606	ENSGT00940000162657	ENSGT00700000104637	ENSGT00730000111592	ENSGT00730000111626 #8	ENSGT00940000164168 #9	ENSGT00940000162465 #15	ENSGT00940000154467.b.b.b #16	ENSGT00940000154467.b.a ##16	ENSGT00940000154467.a.h.b #17	ENSGT00940000163983	ENSGT00940000162966 #20	ENSGT00940000154172.x.a #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #25	ENSGT00940000161937 #26	ENSGT00940000161521 #28	ENSGT00940000162157 #29	ENSGT00940000159364 #30	ENSGT00940000161581 #32	ENSGT00390000008281 #33	ENSGT00390000003062 #34	ENSGT00940000154716 #35	ENSGT00950000183212.C #37	ENSGT00950000183065.B	ENSGT00940000162698	ENSGT00940000160649	ENSGT00390000000698	ENSGT00390000014244
Arabian camel	MODERN SPECIES	13	ENSCDRG00005016128 #8	ENSCDRG00005016116 #8	ENSCDRG00005016105 #9	C1orf68 (ENSCDRG00005016061) #13	ENSCDRG00005016046	CRNN (ENSCDRG00005015862) #15	ENSCDRG00005015826 #16	ENSCDRG00005015797 #16	ENSCDRG00005015707 ##16	ENSCDRG00005015682	ENSCDRG00005015608 #17	ENSCDRG00005015568	ENSCDRG00005015525 #20	ENSCDRG00005015487 #21	ENSCDRG00005015452	ENSCDRG00005015426 #22	THEM4 (ENSCDRG00005015376) #25	THEM5 (ENSCDRG00005015330) #26	RORC (ENSCDRG00005015191) #28	LINGO4 (ENSCDRG00005015167) #29	TDRKH (ENSCDRG00005015083) #30	OAZ3 (ENSCDRG00005014745) #32	MRPL9 (ENSCDRG00005014548) #33	ENSCDRG00005014479 #34	CELF3 (ENSCDRG00005014367) #35	SNX27 (ENSCDRG00005014065) #37	TUFT1 (ENSCDRG00005013754)	ENSCDRG00005013658	POGZ (ENSCDRG00005011049)	PSMB4 (ENSCDRG00005010934)	SELENBP1 (ENSCDRG00005010725)
Alpaca	MODERN SPECIES	4320																S100A10 (ENSVPAG00000003443) #22
Suina	ANCESTRAL SPECIES	8	ENSGT00940000166289	ENSGT00950000183301	ENSGT00730000111554 #12	ENSGT00730000111580 #13	ENSGT00940000161842.a	ENSGT00940000165404 #14	ENSGT00940000163905	ENSGT00940000163498	ENSGT00730000113097	ENSGT00940000162465 #15	ENSGT00940000154467.b.b.b #16	ENSGT00940000154467.a.i #18	ENSGT00940000163983	ENSGT00940000162966 #20	ENSGT00940000154172 #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #25	ENSGT00940000161937 #26	ENSGT00940000163537 #27	ENSGT00940000161521 #28	ENSGT00940000162157 #29	ENSGT00940000159364 #30	ENSGT00940000161581 #32	ENSGT00390000008281 #33	ENSGT00390000003062 #34	ENSGT00940000154716 #35	ENSGT00950000183212.C #37	ENSGT00950000183065.B	ENSGT00940000154489.B	ENSGT00940000162698	ENSGT00940000160649
Chacoan peccary	MODERN SPECIES	29	SMCP (ENSCWAG00000002916) #10	LCE7A (ENSCWAG00000002921)	LCE1A (ENSCWAG00000002932)	ENSCWAG00000002940	KPRP (ENSCWAG00000002949) #12	C1orf68 (ENSCWAG00000002953) #13	ENSCWAG00000002958	ENSCWAG00000002982 #15	ENSCWAG00000002990 #16	ENSCWAG00000003000 #16	RPTN (ENSCWAG00000003036) #18	ENSCWAG00000003046	TCHHL1 (ENSCWAG00000003058) #20	ENSCWAG00000003065	S100A11 (ENSCWAG00000003075) #21	S100A10 (ENSCWAG00000003083) #22	THEM5 (ENSCWAG00000003108) #26	C2CD4D (ENSCWAG00000003120) #27	RORC (ENSCWAG00000003140) #28	LINGO4 (ENSCWAG00000005108) #29	TDRKH (ENSCWAG00000005128) #30	OAZ3 (ENSCWAG00000005285) #32	MRPL9 (ENSCWAG00000005339) #33	RIIAD1 (ENSCWAG00000005371) #34	CELF3 (ENSCWAG00000005407) #35	SNX27 (ENSCWAG00000005517) #37	TUFT1 (ENSCWAG00000005625)	CGN (ENSCWAG00000005751)	POGZ (ENSCWAG00000005868)	PSMB4 (ENSCWAG00000006120)	SELENBP1 (ENSCWAG00000006161)
Pig	MODERN SPECIES	12	LCE5A (ENSSSCG00000040878)	ENSSSCG00000053408	LCE3B (ENSSSCG00000061182) #14	ENSSSCG00000051890	ENSSSCG00000053487	CRCT1 (ENSSSCG00000044768)	CRNN (ENSSSCG00000006604) #15	ENSSSCG00000042564 #16	ENSSSCG00000030031	ENSSSCG00000054200	ENSSSCG00000044041 #17	ENSSSCG00000006605 #18	ENSSSCG00000038121	TCHHL1 (ENSSSCG00000006609) #20	S100A11 (ENSSSCG00000006610) #21	S100A10 (ENSSSCG00000006612) #22	ENSSSCG00000057672 #25	THEM5 (ENSSSCG00000006614) #26	C2CD4D (ENSSSCG00000021540) #27	RORC (ENSSSCG00000026427) #28	LINGO4 (ENSSSCG00000026259) #29	TDRKH (ENSSSCG00000027770) #30	OAZ3 (ENSSSCG00000027091) #32	MRPL9 (ENSSSCG00000028343) #33	RIIAD1 (ENSSSCG00000041677) #34	CELF3 (ENSSSCG00000006618) #35	SNX27 (ENSSSCG00000006619) #37	TUFT1 (ENSSSCG00000006620)	ENSSSCG00000006621	POGZ (ENSSSCG00000006622)	PSMB4 (ENSSSCG00000034984)