Laurasiatheria_a ANCESTRAL SPECIES ENSGT00940000165404 ENSGT00940000163905 ENSGT00940000163498 ENSGT00730000113097 ENSGT00940000161842.a ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000154467.b.b.a ENSGT00940000154467.a.h.a ENSGT00940000170498 ENSGT00940000154467.b.a ENSGT00940000154467.a.i ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172 ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000162698 ENSGT00940000160649 ENSGT00390000000698 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00730000111580 ENSGT00940000163905 ENSGT00940000165404 ENSGT00940000163498 ENSGT00730000113097 ENSGT00940000161842.a ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000154467.b.b.a ENSGT00940000170498 ENSGT00940000154467.b.a ENSGT00940000154467.a.i ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172 ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000162698 ENSGT00940000160649 ENSGT00390000000698 Carnivora ANCESTRAL SPECIES 1 ENSGT00950000183301 ENSGT00730000111554 ENSGT00730000111580 ENSGT00940000163905 ENSGT00730000113097 ENSGT00940000161842.a ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000154467.b.b.a ENSGT00940000170498 ENSGT00940000154467.b.a ENSGT00940000154467.a.i ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172 ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000162698 ENSGT00940000160649 ENSGT00390000000698 Caniformia ANCESTRAL SPECIES 31 ENSGT00940000164168 ENSGT00440000039991 ENSGT00950000183301 ENSGT00730000111554 ENSGT00730000111580 ENSGT00940000163905 ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000154467.b.b.a ENSGT00940000170498 ENSGT00940000154467.b.a ENSGT00940000154467.a.i ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172 ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000162698 ENSGT00940000160649 ENSGT00390000000698 Canidae DUPLICATION Canidae ANCESTRAL SPECIES 18 ENSGT00940000164168 ENSGT00440000039991 ENSGT00780000122937 ENSGT00950000183312 ENSGT00940000176100.e ENSGT00730000111554 ENSGT00730000111580 ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000154467.b.b.a ENSGT00940000154467.b.a ENSGT00940000154467.a.i ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172 ENSGT00940000154197.b.b.ab #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000162698 ENSGT00940000160649 ENSGT00390000000698 Canis_lupus ANCESTRAL SPECIES 10 ENSGT00940000164168 ENSGT01050000246051 ENSGT00780000122937 ENSGT00950000183312 ENSGT00940000176100.e ENSGT00730000111554 ENSGT00730000111580 ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000154467.b.b.a ENSGT00940000154467.b.a ENSGT00940000154467.a.i ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172 ENSGT00940000154197.b.b.ab #22 ENSGT00940000160047 ENSGT01090000260046.e.b.b.b.b ##28 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281.o ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000162698 ENSGT00940000160649 Dog DUPLICATION Dog MODERN SPECIES 144 ENSCAFG00845020965 #7 GABRA3 (ENSCAFG00845025696) #8 ENSCAFG00845025642 #9 ENSCAFG00845025623 #10 GABRE (ENSCAFG00845025508) #11 ENSCAFG00845025413 #12 ENSCAFG00845025383 #13 CNGA2 (ENSCAFG00845025318) #14 FATE1 (ENSCAFG00845025266) #15 PRRG3 (ENSCAFG00845025199) #16 PASD1 (ENSCAFG00845024984) #17 VMA21 (ENSCAFG00845024854) #18 ENSCAFG00845024819 #19 ENSCAFG00845024779 #20 GPR50 (ENSCAFG00845024698) #21 S100A10 (ENSCAFG00845024667) #22 HMGB3 (ENSCAFG00845024577) #23 ENSCAFG00845024375 #24 MTMR1 (ENSCAFG00845023576) #25 ENSCAFG00845023123 #26 ENSCAFG00845023024 #27 ENSCAFG00845022945 #28 ENSCAFG00845022636 #29 ENSCAFG00845022615 #30 ENSCAFG00845022395 #31 ENSCAFG00845022345 #32 ENSCAFG00845022298 #33 ENSCAFG00845022285 #34 ENSCAFG00845022257 #35 ENSCAFG00845022166 #36 ENSCAFG00845022106 #37 Dog MODERN SPECIES 8 ENSCAFG00845026168 ENSCAFG00845026131 ENSCAFG00845026059 C1orf68 (ENSCAFG00845026034) ENSCAFG00845025984 ENSCAFG00845025948 ENSCAFG00845025920 ENSCAFG00845025895 ENSCAFG00845025860 RPTN (ENSCAFG00845025826) ENSCAFG00845025766 TCHHL1 (ENSCAFG00845025618) ENSCAFG00845025590 ENSCAFG00845025548 ENSCAFG00845025500 S100A10 (ENSCAFG00845025458) ##22 THEM4 (ENSCAFG00845025388) ENSCAFG00845025367 ##28 THEM5 (ENSCAFG00845025312) ENSCAFG00845025285 RORC (ENSCAFG00845025144) LINGO4 (ENSCAFG00845025100) TDRKH (ENSCAFG00845024938) OAZ3 (ENSCAFG00845024748) ENSCAFG00845024650 ENSCAFG00845024612 RIIAD1 (ENSCAFG00845024568) CELF3 (ENSCAFG00845024380) SNX27 (ENSCAFG00845024124) TUFT1 (ENSCAFG00845023851) CGN (ENSCAFG00845023683) Dingo MODERN SPECIES 223 ENSCAFG00020009390 ENSCAFG00020009395 LCE7A (ENSCAFG00020009396) ENSCAFG00020009400 KPRP (ENSCAFG00020009402) C1orf68 (ENSCAFG00020009403) ENSCAFG00020009418 ENSCAFG00020009420 ENSCAFG00020009424 ENSCAFG00020009446 ENSCAFG00020009450 TCHHL1 (ENSCAFG00020009462) ENSCAFG00020009466 ENSCAFG00020009468 S100A11 (ENSCAFG00020009473) S100A10 (ENSCAFG00020009496) #22 THEM4 (ENSCAFG00020009499) ENSCAFG00020009502 ##28 THEM5 (ENSCAFG00020009506) RORC (ENSCAFG00020009513) LINGO4 (ENSCAFG00020009599) TDRKH (ENSCAFG00020009606) OAZ3 (ENSCAFG00020009650) ENSCAFG00020009687 RIIAD1 (ENSCAFG00020009697) CELF3 (ENSCAFG00020009731) SNX27 (ENSCAFG00020009876) TUFT1 (ENSCAFG00020010517) ENSCAFG00020010534 POGZ (ENSCAFG00020010728) PSMB4 (ENSCAFG00020012881) Red fox DUPLICATION Red fox MODERN SPECIES 176 ENSVVUG00000013725 RPTN (ENSVVUG00000013723) ENSVVUG00000013722 TCHHL1 (ENSVVUG00000013717) ENSVVUG00000013706 ENSVVUG00000013702 ENSVVUG00000013698 #22 THEM4 (ENSVVUG00000013687) THEM5 (ENSVVUG00000013676) RORC (ENSVVUG00000013598) LINGO4 (ENSVVUG00000013594) TDRKH (ENSVVUG00000013241) OAZ3 (ENSVVUG00000013149) MRPL9 (ENSVVUG00000013099) ENSVVUG00000013087 ENSVVUG00000013083 CELF3 (ENSVVUG00000013080) ENSVVUG00000013078 SNX27 (ENSVVUG00000013003) ENSVVUG00000012997 TUFT1 (ENSVVUG00000012985) ENSVVUG00000012977 Red fox MODERN SPECIES 9 ERI3 (ENSVVUG00000007924) ENSVVUG00000007902 ENSVVUG00000007889 TMEM53 (ENSVVUG00000007884) ARMH1 (ENSVVUG00000007852) KIF2C (ENSVVUG00000007840) RPS8 (ENSVVUG00000007816) BEST4 (ENSVVUG00000007803) PLK3 (ENSVVUG00000007772) TCTEX1D4 (ENSVVUG00000007762) BTBD19 (ENSVVUG00000007755) PTCH2 (ENSVVUG00000007736) EIF2B3 (ENSVVUG00000007715) HECTD3 (ENSVVUG00000007695) UROD (ENSVVUG00000007661) ENSVVUG00000007648 #22 ZSWIM5 (ENSVVUG00000007508) MUTYH (ENSVVUG00000007482) TOE1 (ENSVVUG00000007469) TESK2 (ENSVVUG00000007462) CCDC163 (ENSVVUG00000007444) MMACHC (ENSVVUG00000007436) ENSVVUG00000007433 AKR1A1 (ENSVVUG00000007404) NASP (ENSVVUG00000007384) CCDC17 (ENSVVUG00000007358) GPBP1L1 (ENSVVUG00000007354) ENSVVUG00000007350 IPP (ENSVVUG00000007334) ENSVVUG00000007332 MAST2 (ENSVVUG00000007302) Canidae DUPLICATION Canidae ANCESTRAL SPECIES 35 ENSGT00530000063558.A ENSGT00530000063503.a.a ENSGT00940000157308 ENSGT00530000063907.d ENSGT00950000185406 ENSGT00530000063169.b.b ENSGT00390000010218.e.b ENSGT00900000141090 ENSGT00950000183105.A.m.a ENSGT00910000144283 ENSGT00950000182866.D.d.a.d ENSGT00940000153695.B ENSGT00940000156527 ENSGT00940000156881 ENSGT00940000156631.B ENSGT00940000154197.b.b.`b.a ##22 ENSGT00390000008948 ENSGT00940000158592 ENSGT00390000007697 ENSGT00390000006307 ENSGT00940000160318 ENSGT00940000153251.a ENSGT00940000161692 ENSGT00390000016177.f ENSGT00390000004910 ENSGT00940000162847 ENSGT00940000153998.a ENSGT00950000183224 ENSGT00390000004871.b.l ENSGT00390000004871.a ENSGT00410000029325 Canis_lupus ANCESTRAL SPECIES 31 ENSGT00530000063558.A ENSGT00530000063503.a.a ENSGT00940000157308 ENSGT00530000063907.d ENSGT00950000185406 ENSGT00530000063169.b.b ENSGT00390000010218.e.b ENSGT00900000141090 ENSGT00950000183105.A.m.a ENSGT00910000144283 ENSGT00950000182866.D.d.a.d ENSGT00940000153695.B ENSGT00940000156527 ENSGT00940000156881 ENSGT00940000156631.B ENSGT00940000154197.b.b.`b.a ##22 ENSGT00390000008948 ENSGT00940000158592 ENSGT00390000007697 ENSGT00390000006307 ENSGT00940000160318 ENSGT00940000153251.a ENSGT00940000161692 ENSGT00390000016177.f.a ENSGT00390000004910 ENSGT00940000162847 ENSGT00940000153998.a ENSGT00950000183224 ENSGT00390000004871.b.l ENSGT00390000004871.a ENSGT00410000029325 Dog MODERN SPECIES 26 ENSCAFG00845021152 ENSCAFG00845021173 ENSCAFG00845021216 TRMT10C (ENSCAFG00845021243) PCNP (ENSCAFG00845021277) ZBTB11 (ENSCAFG00845021345) RPL24 (ENSCAFG00845021526) CEP97 (ENSCAFG00845021636) NXPE3 (ENSCAFG00845021747) NFKBIZ (ENSCAFG00845021884) ZPLD1 (ENSCAFG00845022199) ENSCAFG00845022304 ALCAM (ENSCAFG00845022356) ENSCAFG00845022553 CBLB (ENSCAFG00845022767) ENSCAFG00845023207 ##22 CCDC54 (ENSCAFG00845023224) BBX (ENSCAFG00845023396) CD47 (ENSCAFG00845024257) IFT57 (ENSCAFG00845024514) MYH15 (ENSCAFG00845024820) CIP2A (ENSCAFG00845025731) DZIP3 (ENSCAFG00845026061) ENSCAFG00845026866 TRAT1 (ENSCAFG00845026944) GUCA1C (ENSCAFG00845027038) MORC1 (ENSCAFG00845027112) C33H3orf85 (ENSCAFG00845027239) ENSCAFG00845027272 ENSCAFG00845027408 NECTIN3 (ENSCAFG00845027455) Dingo MODERN SPECIES 65 ENSCAFG00020009217 SENP7 (ENSCAFG00020008889) ENSCAFG00020008867 ENSCAFG00020008864 TRMT10C (ENSCAFG00020008862) PCNP (ENSCAFG00020008846) ZBTB11 (ENSCAFG00020008835) RPL24 (ENSCAFG00020008829) CEP97 (ENSCAFG00020008805) NXPE3 (ENSCAFG00020008802) NFKBIZ (ENSCAFG00020008790) ZPLD1 (ENSCAFG00020008754) ENSCAFG00020008738 ALCAM (ENSCAFG00020008731) CBLB (ENSCAFG00020008526) ENSCAFG00020008488 ##22 CCDC54 (ENSCAFG00020008463) BBX (ENSCAFG00020008323) CD47 (ENSCAFG00020008300) IFT57 (ENSCAFG00020008287) MYH15 (ENSCAFG00020008254) CIP2A (ENSCAFG00020008089) DZIP3 (ENSCAFG00020007716) ENSCAFG00020007673 TRAT1 (ENSCAFG00020007659) GUCA1C (ENSCAFG00020007650) ENSCAFG00020007635 ENSCAFG00020007632 NECTIN3 (ENSCAFG00020007611) ZBED2 (ENSCAFG00020007603) CD96 (ENSCAFG00020007587) Red fox MODERN SPECIES 6 ENSVVUG00000021734 TRMT10C (ENSVVUG00000021735) PCNP (ENSVVUG00000021736) ZBTB11 (ENSVVUG00000021737) RPL24 (ENSVVUG00000021739) CEP97 (ENSVVUG00000021740) NXPE3 (ENSVVUG00000021743) NFKBIZ (ENSVVUG00000021744) ENSVVUG00000021747 ZPLD1 (ENSVVUG00000021754) ENSVVUG00000021771 ENSVVUG00000021772 ENSVVUG00000021773 ALCAM (ENSVVUG00000021774) CBLB (ENSVVUG00000021782) ENSVVUG00000021795 ##22 CCDC54 (ENSVVUG00000021808) BBX (ENSVVUG00000021813) CD47 (ENSVVUG00000021818) IFT57 (ENSVVUG00000021819) MYH15 (ENSVVUG00000021822) CIP2A (ENSVVUG00000021833) DZIP3 (ENSVVUG00000021904) RETNLB (ENSVVUG00000021917) TRAT1 (ENSVVUG00000021918) MORC1 (ENSVVUG00000021920) DPPA2 (ENSVVUG00000021923) ENSVVUG00000021925 ENSVVUG00000021931 ENSVVUG00000021935 NECTIN3 (ENSVVUG00000021940) Canidae ANCESTRAL SPECIES ENSGT00940000154197.b.b.`b.b ##22 Canis_lupus ANCESTRAL SPECIES 30 ENSGT00940000154197.b.b.`b.b ##22 ENSGT00940000155475 ENSGT00800000124172 ENSGT00530000064570.q ENSGT00940000156337 ENSGT00940000169764 ENSGT00950000183027.b ENSGT00950000183054.a.a.a ENSGT00950000182924.A.b.a.b ENSGT00550000075003 ENSGT00940000154451.k.b.b ENSGT00940000158131 ENSGT00940000160665 ENSGT00510000046470.a.a.a.d.b ENSGT00940000172584.c.b.a.a ENSGT01070000254361 Dingo MODERN SPECIES 308 ENSCAFG00020017950 ##22 PDE5A (ENSCAFG00020017554) FABP2 (ENSCAFG00020017519) ENSCAFG00020017515 USP53 (ENSCAFG00020017496) ENSCAFG00020017490 MYOZ2 (ENSCAFG00020017484) SYNPO2 (ENSCAFG00020017481) ENSCAFG00020017478 SEC24D (ENSCAFG00020017464) METTL14 (ENSCAFG00020017450) ENSCAFG00020017446 PRSS12 (ENSCAFG00020017432) NDST3 (ENSCAFG00020017398) TRAM1L1 (ENSCAFG00020017395) ENSCAFG00020017392 Dog MODERN SPECIES 25 ENSCAFG00845030376 ##22 PDE5A (ENSCAFG00845030199) FABP2 (ENSCAFG00845030144) ENSCAFG00845030125 USP53 (ENSCAFG00845030047) MYOZ2 (ENSCAFG00845030005) SYNPO2 (ENSCAFG00845029946) SEC24D (ENSCAFG00845029774) METTL14 (ENSCAFG00845029674) ENSCAFG00845029655 PRSS12 (ENSCAFG00845029625) NDST3 (ENSCAFG00845029512) TRAM1L1 (ENSCAFG00845029459) ENSCAFG00845029353 ENSCAFG00845029324 ENSCAFG00845029266 Caniformia_b DUPLICATION Caniformia_b DUPLICATION Caniformia_b ANCESTRAL SPECIES ENSGT00940000154197.b.b.y.a #22 Mustelinae ANCESTRAL SPECIES ENSGT00940000154197.b.b.y.a #22 American mink MODERN SPECIES 7 B4GALT5 (ENSNVIG00000007732) PTGIS (ENSNVIG00000007847) KCNB1 (ENSNVIG00000007882) ENSNVIG00000007903 ZNFX1 (ENSNVIG00000007977) DDX27 (ENSNVIG00000008022) STAU1 (ENSNVIG00000008091) XPO2 (ENSNVIG00000008329) ENSNVIG00000008477 ARFGEF2 (ENSNVIG00000008501) PREX1 (ENSNVIG00000008654) SULF2 (ENSNVIG00000008727) NCOA3 (ENSNVIG00000008834) ZMYND8 (ENSNVIG00000008911) EYA2 (ENSNVIG00000009193) ENSNVIG00000009316 #22 SLC2A10 (ENSNVIG00000009325) TP53RK (ENSNVIG00000009336) SLC13A3 (ENSNVIG00000009356) OCSTAMP (ENSNVIG00000009453) ENSNVIG00000009478 ENSNVIG00000009502 ELMO2 (ENSNVIG00000009522) SLC35C2 (ENSNVIG00000009604) CDH22 (ENSNVIG00000009638) TNR5 (ENSNVIG00000009676) NCOA5 (ENSNVIG00000009734) ENSNVIG00000009758 ENSNVIG00000009793 MMP9 (ENSNVIG00000009799) ZNF335 (ENSNVIG00000009815) Caniformia_b ANCESTRAL SPECIES 35 ENSGT00940000163019 ENSGT00940000163248 ENSGT00940000164168 ENSGT00440000039991 ENSGT00950000183301 ENSGT00730000111554 ENSGT00730000111580 ENSGT00940000163905 ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000170498 ENSGT00940000154467.b.a ENSGT00940000154467.a.i ENSGT00940000162966 ENSGT00940000154172 ENSGT00940000154197.b.b.y.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000162698 ENSGT00940000160649 ENSGT00390000000698 Mustelinae ANCESTRAL SPECIES 81 ENSGT00940000154467.b.a ENSGT00940000154467.a.i ENSGT00940000163983 ENSGT00940000164620 ENSGT00940000162966 ENSGT00940000154172 ENSGT00940000154197.b.b.y.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000162698 ENSGT00940000160649 ENSGT00390000000698 American mink MODERN SPECIES 316 ENSNVIG00000014136 RPTN (ENSNVIG00000014147) TCHHL1 (ENSNVIG00000014160) S100A11 (ENSNVIG00000014167) S100A10 (ENSNVIG00000014176) #22 THEM4 (ENSNVIG00000014185) THEM5 (ENSNVIG00000014205) C2CD4D (ENSNVIG00000014218) RORG (ENSNVIG00000014222) LINGO4 (ENSNVIG00000014264) TDRKH (ENSNVIG00000014276) OAZ3 (ENSNVIG00000014414) MRPL9 (ENSNVIG00000014498) RIIAD1 (ENSNVIG00000014540) CELF3 (ENSNVIG00000014558) SNX27 (ENSNVIG00000014632) TUFT1 (ENSNVIG00000014726) ENSNVIG00000014806 POGZ (ENSNVIG00000014867) PSMB4 (ENSNVIG00000015080) Ursidae ANCESTRAL SPECIES ENSGT00940000163248 ENSGT00940000164168 ENSGT00440000039991 ENSGT00950000183301 ENSGT00730000111554 ENSGT00940000161842.b ENSGT00730000111580 ENSGT00940000163905 ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000170498 ENSGT00940000154467.b.a ENSGT00940000154467.a.i ENSGT00940000162966 ENSGT00940000154172.g.b ENSGT00940000154197.b.b.y.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000162698 ENSGT00940000160649 ENSGT00390000000698 ENSGT00390000014244 Ursus DUPLICATION Ursus ANCESTRAL SPECIES 5 ENSGT00390000012431 ENSGT00940000159994 ENSGT00950000182904.a.b.b ENSGT00390000012482 ENSGT00940000159489 ENSGT00390000015797.c.a ENSGT00940000161827 ENSGT00940000163613 ENSGT00940000159134 ENSGT00940000160489 ENSGT00940000160221 ENSGT00940000154929.B ENSGT01030000234558.D.b ENSGT00940000154149.b.b ENSGT00550000075110 ENSGT00940000154197.b.b.y.b.a #22 ENSGT00940000159323 ENSGT00940000161246 ENSGT00390000001907 ENSGT00940000160542 ENSGT00390000013782 ENSGT00390000006166 ENSGT00390000016851 ENSGT00940000157019 ENSGT00390000007029.j ENSGT00390000012240.i ENSGT00390000007336 ENSGT00510000049316 ENSGT00390000016934 ENSGT00530000063974.a ENSGT00940000160748 Polar bear MODERN SPECIES 255 PIK3R2 (ENSUMAG00000009514) MAST3 (ENSUMAG00000009640) IL12RB1 (ENSUMAG00000009832) ENSUMAG00000009844 ENSUMAG00000009850 CCDC124 (ENSUMAG00000009858) SLC5A5 (ENSUMAG00000009865) ENSUMAG00000009876 JAK3 (ENSUMAG00000009973) B3GNT3 (ENSUMAG00000010749) FCHO1 (ENSUMAG00000010837) MAP1S (ENSUMAG00000011311) ENSUMAG00000011373 NIBAN3 (ENSUMAG00000011737) PGLS (ENSUMAG00000011747) ENSUMAG00000011752 #22 SLC27A1 (ENSUMAG00000011769) ENSUMAG00000011774 MVB12A (ENSUMAG00000011781) ENSUMAG00000011787 PLVAP (ENSUMAG00000011789) ANO8 (ENSUMAG00000011803) ENSUMAG00000011835 ENSUMAG00000011843 ENSUMAG00000011847 ENSUMAG00000011853 ENSUMAG00000011855 BABAM1 (ENSUMAG00000011859) USHBP1 (ENSUMAG00000011869) ENSUMAG00000011885 ENSUMAG00000011888 American black bear MODERN SPECIES 994 MAP1S (ENSUAMG00000000342) ENSUAMG00000000381 COLGALT1 (ENSUAMG00000001248) NIBAN3 (ENSUAMG00000001413) PGLS (ENSUAMG00000001538) ENSUAMG00000001541 #22 SLC27A1 (ENSUAMG00000001548) NXNL1 (ENSUAMG00000001563) TMEM221 (ENSUAMG00000001572) MVB12A (ENSUAMG00000001586) ENSUAMG00000001590 Ursus ANCESTRAL SPECIES 18 ENSGT00390000002634.b ENSGT00940000153231.B ENSGT01100000263525.a.b.b.c.b ENSGT00950000185586 ENSGT00940000163248 ENSGT00940000164168 ENSGT00440000039991 ENSGT00730000111554 ENSGT00940000161842.b ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000154467.b.a ENSGT00940000154467.a.i ENSGT00940000162966 ENSGT00940000154172.g.b ENSGT00940000154197.b.b.y.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000162698 ENSGT00940000160649 ENSGT00390000000698 ENSGT00390000014244.bb Polar bear MODERN SPECIES 193 ENSUMAG00000001108 PGLYRP4 (ENSUMAG00000001126) PGLYRP3 (ENSUMAG00000001171) ENSUMAG00000001191 ENSUMAG00000001205 ENSUMAG00000001215 ENSUMAG00000001231 SMCP (ENSUMAG00000001235) ENSUMAG00000001281 ENSUMAG00000001292 ENSUMAG00000001308 ENSUMAG00000001321 ENSUMAG00000001326 TCHHL1 (ENSUMAG00000001361) S100A11 (ENSUMAG00000001371) ENSUMAG00000001376 #22 THEM4 (ENSUMAG00000001386) THEM5 (ENSUMAG00000001423) RORC (ENSUMAG00000001429) LINGO4 (ENSUMAG00000001441) TDRKH (ENSUMAG00000001456) OAZ3 (ENSUMAG00000001672) MRPL9 (ENSUMAG00000001723) ENSUMAG00000001727 RIIAD1 (ENSUMAG00000001735) CELF3 (ENSUMAG00000001772) SNX27 (ENSUMAG00000001910) TUFT1 (ENSUMAG00000002225) ENSUMAG00000002267 POGZ (ENSUMAG00000002469) PSMB4 (ENSUMAG00000002476) Giant Panda MODERN SPECIES 11 ENSAMEG00000025202 SMCP (ENSAMEG00000019350) ENSAMEG00000027287 ENSAMEG00000027951 ENSAMEG00000011369 ENSAMEG00000028140 C1orf68 (ENSAMEG00000023884) ENSAMEG00000028600 ENSAMEG00000025755 ENSAMEG00000028230 ENSAMEG00000029891 ENSAMEG00000024220 RPTN (ENSAMEG00000028886) TCHHL1 (ENSAMEG00000004225) ENSAMEG00000030837 S100A10 (ENSAMEG00000000350) #22 THEM4 (ENSAMEG00000000355) THEM5 (ENSAMEG00000000361) RORC (ENSAMEG00000000363) LINGO4 (ENSAMEG00000019097) TDRKH (ENSAMEG00000000421) OAZ3 (ENSAMEG00000000484) ENSAMEG00000000491 RIIAD1 (ENSAMEG00000029312) CELF3 (ENSAMEG00000000509) SNX27 (ENSAMEG00000000540) TUFT1 (ENSAMEG00000000574) ENSAMEG00000000601 POGZ (ENSAMEG00000000622) PSMB4 (ENSAMEG00000000645) SELENBP1 (ENSAMEG00000000659) Caniformia_b ANCESTRAL SPECIES ENSGT00940000154197.b.b.z #22 Mustelinae ANCESTRAL SPECIES ENSGT00940000154197.b.b.z #22 Ferret DUPLICATION Ferret MODERN SPECIES 398 ENSMPUG00000003475 ENSMPUG00000003479 ENSMPUG00000003481 ENSMPUG00000003484 ENSMPUG00000003490 ENSMPUG00000003496 TCHHL1 (ENSMPUG00000003502) ENSMPUG00000003509 ENSMPUG00000003517 #22 ENSMPUG00000003526 THEM5 (ENSMPUG00000003530) ENSMPUG00000003542 RORC (ENSMPUG00000003550) LINGO4 (ENSMPUG00000018420) TDRKH (ENSMPUG00000003558) OAZ3 (ENSMPUG00000003571) MRPL9 (ENSMPUG00000003590) RIIAD1 (ENSMPUG00000003602) CELF3 (ENSMPUG00000003617) SNX27 (ENSMPUG00000003631) TUFT1 (ENSMPUG00000003694) ENSMPUG00000003701 ENSMPUG00000003710 POGZ (ENSMPUG00000003718) Ferret MODERN SPECIES 300 TGS1 (ENSMPUG00000010475) TMEM68 (ENSMPUG00000010480) ENSMPUG00000010486 ENSMPUG00000010493 RP1 (ENSMPUG00000010497) SOX17 (ENSMPUG00000010506) ENSMPUG00000010510 ENSMPUG00000010523 ENSMPUG00000018368 ENSMPUG00000010533 LYPLA1 (ENSMPUG00000010559) ENSMPUG00000010596 TCEA1 (ENSMPUG00000010602) RGS20 (ENSMPUG00000010644) ATP6V1H (ENSMPUG00000010647) ENSMPUG00000018369 #22 OPRK1 (ENSMPUG00000010654) Ursidae ANCESTRAL SPECIES ENSGT00940000154197.b.b.z #22 Giant Panda DUPLICATION Giant Panda DUPLICATION Giant Panda MODERN SPECIES 1314 ENSAMEG00000025466 #22 Giant Panda MODERN SPECIES 1148 ENSAMEG00000031345 #22 Giant Panda MODERN SPECIES 1290 ENSAMEG00000026724 #22 Felidae ANCESTRAL SPECIES 10 ENSGT00780000122937 ENSGT00950000183301 ENSGT00730000111554 ENSGT00730000111580 ENSGT00940000163905 ENSGT00730000113097 ENSGT00940000161842.a ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000154467.a.h.a ENSGT00940000154467.b.a ENSGT00940000154467.a.i ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172 ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000154489.B ENSGT00940000162698 ENSGT00940000160649 Panthera ANCESTRAL SPECIES 40 ENSGT00780000122937 ENSGT00950000183301 ENSGT00730000111554 ENSGT00730000111580 ENSGT00940000163905.e ENSGT00940000163905.f ENSGT00730000113097 ENSGT00940000161842.a ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000154467.b.a ENSGT00940000154467.a.i ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172 ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000154489.B ENSGT00940000162698 ENSGT00940000160649 Tiger MODERN SPECIES 275 ENSPTIG00000006961 ENSPTIG00000006953 ENSPTIG00000006948 ENSPTIG00000006897 C1orf68 (ENSPTIG00000006854) ENSPTIG00000006839 ENSPTIG00000006837 LCE5A (ENSPTIG00000006817) CRNN (ENSPTIG00000015000) ENSPTIG00000014745 RPTN (ENSPTIG00000013862) TCHHL1 (ENSPTIG00000013468) S100A11 (ENSPTIG00000012739) S100A10 (ENSPTIG00000012263) #22 THEM4 (ENSPTIG00000011246) THEM5 (ENSPTIG00000010208) RORC (ENSPTIG00000008094) LINGO4 (ENSPTIG00000006738) TDRKH (ENSPTIG00000019916) OAZ3 (ENSPTIG00000018493) MRPL9 (ENSPTIG00000017020) ENSPTIG00000016080 CELF3 (ENSPTIG00000013450) SNX27 (ENSPTIG00000011081) TUFT1 (ENSPTIG00000007975) ENSPTIG00000006973 POGZ (ENSPTIG00000020597) PSMB4 (ENSPTIG00000019518) SELENBP1 (ENSPTIG00000016772) Panthera_a ANCESTRAL SPECIES 38 ENSGT00940000163905.e ENSGT00940000163905.f ENSGT00730000113097 ENSGT00940000161842.a ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000154467.b.a ENSGT00940000154467.a.i ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172 ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000154489.B ENSGT00940000160649 ENSGT00390000000698 lion MODERN SPECIES 8 WARS2 (ENSPLOG00000011821) HAO2 (ENSPLOG00000011694) ENSPLOG00000011592 ZNF697 (ENSPLOG00000011563) PHGDH (ENSPLOG00000011111) HMGCS2 (ENSPLOG00000010925) REG4 (ENSPLOG00000010847) NOTCH2 (ENSPLOG00000010680) SEC22B (ENSPLOG00000010603) PDE4DIP (ENSPLOG00000009882) ENSPLOG00000009717 RPTN (ENSPLOG00000009684) ENSPLOG00000009645 TCHHL1 (ENSPLOG00000009612) ENSPLOG00000009583 S100A10 (ENSPLOG00000009560) #22 THEM4 (ENSPLOG00000009530) THEM5 (ENSPLOG00000009488) C2CD4D (ENSPLOG00000009475) RORC (ENSPLOG00000009361) LINGO4 (ENSPLOG00000009326) TDRKH (ENSPLOG00000009153) OAZ3 (ENSPLOG00000008964) MRPL9 (ENSPLOG00000008857) RIIAD1 (ENSPLOG00000008817) CELF3 (ENSPLOG00000008678) SNX27 (ENSPLOG00000008397) TUFT1 (ENSPLOG00000008146) CGN (ENSPLOG00000007937) POGZ (ENSPLOG00000007770) PSMB4 (ENSPLOG00000007693) leopard MODERN SPECIES 149 ENSPPRG00000022177 ENSPPRG00000022208 CRCT1 (ENSPPRG00000022224) LCE5A (ENSPPRG00000013328) CRNN (ENSPPRG00000013371) ENSPPRG00000016115 RPTN (ENSPPRG00000016821) ENSPPRG00000023830 S100A10 (ENSPPRG00000023731) #22 THEM4 (ENSPPRG00000023499) THEM5 (ENSPPRG00000023321) C2CD4D (ENSPPRG00000022384) RORC (ENSPPRG00000000165) LINGO4 (ENSPPRG00000022395) TDRKH (ENSPPRG00000001585) OAZ3 (ENSPPRG00000002633) MRPL9 (ENSPPRG00000003556) RIIAD1 (ENSPPRG00000003657) CELF3 (ENSPPRG00000004600) SNX27 (ENSPPRG00000012629) TUFT1 (ENSPPRG00000020942) CGN (ENSPPRG00000024471) POGZ (ENSPPRG00000023722) PSMB4 (ENSPPRG00000023427) Cat MODERN SPECIES 239 KPRP (ENSFCAG00000039269) ENSFCAG00000034900 C1orf68 (ENSFCAG00000036698) ENSFCAG00000040599 LCE3B (ENSFCAG00000045888) ENSFCAG00000044273 CRNN (ENSFCAG00000045642) ENSFCAG00000044571 ENSFCAG00000053766 HRNR (ENSFCAG00000049092) ENSFCAG00000048765 RPTN (ENSFCAG00000040577) ENSFCAG00000045818 TCHHL1 (ENSFCAG00000046571) ENSFCAG00000041899 S100A10 (ENSFCAG00000010423) #22 THEM4 (ENSFCAG00000003443) THEM5 (ENSFCAG00000010981) C2CD4D (ENSFCAG00000026060) RORC (ENSFCAG00000018105) LINGO4 (ENSFCAG00000010784) TDRKH (ENSFCAG00000010980) OAZ3 (ENSFCAG00000010979) MRPL9 (ENSFCAG00000043355) RIIAD1 (ENSFCAG00000019369) CELF3 (ENSFCAG00000007908) SNX27 (ENSFCAG00000041414) TUFT1 (ENSFCAG00000004073) CGN (ENSFCAG00000004072) POGZ (ENSFCAG00000001864) PSMB4 (ENSFCAG00000001861) Laurasiatheria_c ANCESTRAL SPECIES ENSGT00780000122937 ENSGT00730000111554 ENSGT00940000161842.b ENSGT00730000111580 ENSGT00940000163498 ENSGT00940000165404 ENSGT00940000163905 ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000170498 ENSGT00940000154467.b.a ENSGT00940000154467.a.i ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172 ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000162698 ENSGT00940000160649 ENSGT00390000000698 Equus ANCESTRAL SPECIES 3 ENSGT00940000161842.b.m ENSGT00940000161842.b.n.b ENSGT00940000161842.b.n.a.b ENSGT00940000161842.b.n.a.a ENSGT00940000163498 ENSGT00940000165404 ENSGT00940000163905 ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000170498 ENSGT00940000154467.b.a ENSGT00940000154467.a.i ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172 ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000162698 ENSGT00390000004322.a.a.f ENSGT00940000160649 Horse MODERN SPECIES 26 LCE4A (ENSECAG00000042459) ENSECAG00000041350 ENSECAG00000037218 ENSECAG00000050655 ENSECAG00000054891 LCE3B (ENSECAG00000042522) ENSECAG00000041610 ENSECAG00000043314 ENSECAG00000044665 CRNN (ENSECAG00000017658) ENSECAG00000028110 ENSECAG00000058901 ENSECAG00000037094 TCHHL1 (ENSECAG00000034035) S100A11 (ENSECAG00000019069) S100A10 (ENSECAG00000019382) #22 THEM4 (ENSECAG00000020127) THEM5 (ENSECAG00000020807) C2CD4D (ENSECAG00000028243) RORC (ENSECAG00000000918) LINGO4 (ENSECAG00000012494) TDRKH (ENSECAG00000013096) OAZ3 (ENSECAG00000015002) MRPL9 (ENSECAG00000016263) CELF3 (ENSECAG00000020365) SNX27 (ENSECAG00000000614) TUFT1 (ENSECAG00000011044) CGN (ENSECAG00000015048) ENSECAG00000039248 POGZ (ENSECAG00000021579) PSMB4 (ENSECAG00000006692) Donkey MODERN SPECIES 17 ENSEASG00005038825 ENSEASG00005033840 LCE3B (ENSEASG00005028563) ENSEASG00005025890 ENSEASG00005037661 ENSEASG00005037749 ENSEASG00005029775 ENSEASG00005035420 ENSEASG00005023707 ENSEASG00005032937 RPTN (ENSEASG00005037477) ENSEASG00005035273 ENSEASG00005031187 TCHHL1 (ENSEASG00005005183) ENSEASG00005005188 ENSEASG00005028682 #22 ENSEASG00005005198 RORC (ENSEASG00005005204) LINGO4 (ENSEASG00005031153) TDRKH (ENSEASG00005005213) OAZ3 (ENSEASG00005005219) MRPL9 (ENSEASG00005030204) RIIAD1 (ENSEASG00005031539) CELF3 (ENSEASG00005005254) SNX27 (ENSEASG00005005260) TUFT1 (ENSEASG00005005295) ENSEASG00005005590 ENSEASG00005005594 POGZ (ENSEASG00005005607) ENSEASG00005005615 ENSEASG00005024206 Chiroptera ANCESTRAL SPECIES 20 ENSGT00940000163019 ENSGT00730000111626 ENSGT01050000246051 ENSGT00780000122937 ENSGT00730000111554 ENSGT00940000161842.b ENSGT00730000111580 ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000170498 ENSGT00940000154467.b.a ENSGT00940000154467.a.i ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172 ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000162698 ENSGT00940000160649 ENSGT00390000000698 Megabat MODERN SPECIES 5628 S100A10 (ENSPVAG00000015664) #22 Microchiroptera ANCESTRAL SPECIES 21 ENSGT00730000111626 ENSGT01050000246051 ENSGT00780000122937 ENSGT00730000111554 ENSGT00940000161842.b ENSGT00730000111580 ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000170498 ENSGT00940000154467.b.a ENSGT00940000154467.a.i ENSGT00940000164620 ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172 ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000162698 ENSGT00940000160649 ENSGT00390000000698 Microbat DUPLICATION Microbat MODERN SPECIES 943 PNPT1 (ENSMLUG00000003886) EFEMP1 (ENSMLUG00000003898) CCDC85A (ENSMLUG00000007767) VRK2 (ENSMLUG00000002069) FANCL (ENSMLUG00000002077) BCL11A (ENSMLUG00000010117) ENSMLUG00000030390 ENSMLUG00000014903 PAPOLG (ENSMLUG00000009853) REL (ENSMLUG00000007454) PUS10 (ENSMLUG00000000082) PEX13 (ENSMLUG00000025131) SANBR (ENSMLUG00000007627) C2orf74 (ENSMLUG00000027969) ENSMLUG00000003408 ENSMLUG00000027445 #22 USP34 (ENSMLUG00000003414) XPO1 (ENSMLUG00000010670) FAM161A (ENSMLUG00000030514) CCT4 (ENSMLUG00000016138) ENSMLUG00000022697 B3GNT2 (ENSMLUG00000009924) ENSMLUG00000027762 EHBP1 (ENSMLUG00000002314) OTX1 (ENSMLUG00000002330) WDPCP (ENSMLUG00000002336) MDH1 (ENSMLUG00000002352) UGP2 (ENSMLUG00000003123) VPS54 (ENSMLUG00000003130) PELI1 (ENSMLUG00000003152) ENSMLUG00000015944 Microbat DUPLICATION Microbat MODERN SPECIES 1088 ENSMLUG00000027933 ENSMLUG00000013964 ENSMLUG00000013963 ENSMLUG00000028866 SPRR4 (ENSMLUG00000013961) ENSMLUG00000002265 LCE3B (ENSMLUG00000002269) ENSMLUG00000025940 CRNN (ENSMLUG00000008478) ENSMLUG00000022674 RPTN (ENSMLUG00000029225) ENSMLUG00000029417 ENSMLUG00000013906 TCHHL1 (ENSMLUG00000013899) ENSMLUG00000014653 ENSMLUG00000005271 #22 ENSMLUG00000027648 THEM5 (ENSMLUG00000002239) RORC (ENSMLUG00000029229) LINGO4 (ENSMLUG00000002233) TDRKH (ENSMLUG00000002213) OAZ3 (ENSMLUG00000002207) MRPL9 (ENSMLUG00000002204) RIIAD1 (ENSMLUG00000029408) CELF3 (ENSMLUG00000002193) SNX27 (ENSMLUG00000002189) TUFT1 (ENSMLUG00000002177) ENSMLUG00000002171 POGZ (ENSMLUG00000002157) PSMB4 (ENSMLUG00000002149) ENSMLUG00000015228 Microbat MODERN SPECIES 942 HOXD13 (ENSMLUG00000006997) HOXD12 (ENSMLUG00000007009) HOXD11 (ENSMLUG00000007030) HOXD10 (ENSMLUG00000007048) HOXD8 (ENSMLUG00000028864) HOXD4 (ENSMLUG00000012508) HOXD3 (ENSMLUG00000012510) ENSMLUG00000029447 MTX2 (ENSMLUG00000015966) ENSMLUG00000003906 NFE2L2 (ENSMLUG00000003909) ENSMLUG00000025480 AGPS (ENSMLUG00000005113) ENSMLUG00000005126 ENSMLUG00000005133 ENSMLUG00000028755 #22 PDE11A (ENSMLUG00000005135) RBM45 (ENSMLUG00000005782) OSBPL6 (ENSMLUG00000005787) ENSMLUG00000022423 ENSMLUG00000005810 PJVK (ENSMLUG00000005814) FKBP7 (ENSMLUG00000005816) PLEKHA3 (ENSMLUG00000005823) ENSMLUG00000024664 TTN (ENSMLUG00000005832) ENSMLUG00000005976 ENSMLUG00000027856 SESTD1 (ENSMLUG00000005032) ZNF385B (ENSMLUG00000013424) ENSMLUG00000013437 Greater horseshoe bat DUPLICATION Greater horseshoe bat DUPLICATION Greater horseshoe bat DUPLICATION Greater horseshoe bat MODERN SPECIES 14 ENSRFEG00010013856 ENSRFEG00010013832 SPRR4 (ENSRFEG00010013804) ENSRFEG00010013574 LCE7A (ENSRFEG00010013553) KPRP (ENSRFEG00010013203) ENSRFEG00010013183 C1orf68 (ENSRFEG00010013146) CRNN (ENSRFEG00010012881) ENSRFEG00010012690 ENSRFEG00010012520 ENSRFEG00010012460 ENSRFEG00010012428 ENSRFEG00010012331 ENSRFEG00010012269 ENSRFEG00010012237 #22 ENSRFEG00010012107 THEM5 (ENSRFEG00010012018) C2CD4D (ENSRFEG00010011998) RORC (ENSRFEG00010011901) LINGO4 (ENSRFEG00010011864) TDRKH (ENSRFEG00010011740) OAZ3 (ENSRFEG00010011457) MRPL9 (ENSRFEG00010011321) RIIAD1 (ENSRFEG00010011257) CELF3 (ENSRFEG00010011151) SNX27 (ENSRFEG00010010910) TUFT1 (ENSRFEG00010010800) ENSRFEG00010010693 POGZ (ENSRFEG00010021734) PSMB4 (ENSRFEG00010021721) Greater horseshoe bat MODERN SPECIES 18 TFEC (ENSRFEG00010019376) ENSRFEG00010019318 TES (ENSRFEG00010019300) CAV2 (ENSRFEG00010019273) CAV1 (ENSRFEG00010019224) MET (ENSRFEG00010019152) CAPZA2 (ENSRFEG00010019032) ST7 (ENSRFEG00010018747) WNT2 (ENSRFEG00010018681) ASZ1 (ENSRFEG00010018560) ENSRFEG00010018517 CFTR (ENSRFEG00010017672) CTTNBP2 (ENSRFEG00010017601) ENSRFEG00010017515 ENSRFEG00010017376 ENSRFEG00010017356 #22 ENSRFEG00010017340 KCND2 (ENSRFEG00010017250) TSPAN12 (ENSRFEG00010017208) ING3 (ENSRFEG00010017054) CPED1 (ENSRFEG00010016992) WNT16 (ENSRFEG00010016926) FAM3C (ENSRFEG00010016879) PTPRZ1 (ENSRFEG00010016626) AASS (ENSRFEG00010016545) FEZF1 (ENSRFEG00010016383) RNF133 (ENSRFEG00010016316) CADPS2 (ENSRFEG00010015967) TAS2R16 (ENSRFEG00010015907) SLC13A1 (ENSRFEG00010015742) IQUB (ENSRFEG00010015538) Greater horseshoe bat MODERN SPECIES ENSRFEG00010000327 LDOC1 (ENSRFEG00010000336) ENSRFEG00010000341 ENSRFEG00010000355 SOX3 (ENSRFEG00010000375) ENSRFEG00010000377 ENSRFEG00010000393 ENSRFEG00010000406 ATP11C (ENSRFEG00010000515) MCF2 (ENSRFEG00010000754) ENSRFEG00010000918 F9 (ENSRFEG00010000937) ENSRFEG00010001019 ENSRFEG00010001096 ENSRFEG00010001105 ENSRFEG00010001121 #22 ENSRFEG00010001128 ENSRFEG00010001132 ENSRFEG00010001156 ENSRFEG00010001177 ZIC3 (ENSRFEG00010001203) ENSRFEG00010001257 GPR101 (ENSRFEG00010001272) ENSRFEG00010001291 ENSRFEG00010001316 RBMX (ENSRFEG00010001354) ARHGEF6 (ENSRFEG00010001444) CD40LG (ENSRFEG00010001594) VGLL1 (ENSRFEG00010001625) ENSRFEG00010001638 ENSRFEG00010001656 Greater horseshoe bat MODERN SPECIES 2 PDHX (ENSRFEG00010004865) CD44 (ENSRFEG00010004816) SLC1A2 (ENSRFEG00010004715) PAMR1 (ENSRFEG00010004646) FJX1 (ENSRFEG00010004625) TRIM44 (ENSRFEG00010004609) LDLRAD3 (ENSRFEG00010004588) COMMD9 (ENSRFEG00010004551) PRR5L (ENSRFEG00010004515) TRAF6 (ENSRFEG00010004489) RAG1 (ENSRFEG00010004482) RAG2 (ENSRFEG00010004473) ENSRFEG00010004464 IFTAP (ENSRFEG00010004417) ENSRFEG00010004383 ENSRFEG00010004372 #22 ENSRFEG00010004357 LRRC4C (ENSRFEG00010004345) ENSRFEG00010004319 ENSRFEG00010004309 API5 (ENSRFEG00010004247) TTC17 (ENSRFEG00010004131) HSD17B12 (ENSRFEG00010004074) ALKBH3 (ENSRFEG00010004046) C11orf96 (ENSRFEG00010004030) ACCSL (ENSRFEG00010004009) ACCS (ENSRFEG00010003969) EXT2 (ENSRFEG00010003919) ALX4 (ENSRFEG00010003877) CD82 (ENSRFEG00010003839) TSPAN18 (ENSRFEG00010003813) Artiodactyla ANCESTRAL SPECIES ENSGT00940000165404 ENSGT00940000163905 ENSGT00940000163498 ENSGT00730000113097 ENSGT00940000161842.a ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000154467.b.b.a ENSGT00940000154467.a.h.a ENSGT00940000154467.b.a ENSGT00940000154467.a.h.b ENSGT00940000154467.a.i ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172 ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000162698 ENSGT00940000160649 ENSGT00390000000698 Suina ANCESTRAL SPECIES 8 ENSGT00940000166289 ENSGT00950000183301 ENSGT00730000111554 ENSGT00730000111580 ENSGT00940000161842.a ENSGT00940000165404 ENSGT00940000163905 ENSGT00940000163498 ENSGT00730000113097 ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000154467.a.i ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172 ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000154489.B ENSGT00940000162698 ENSGT00940000160649 Chacoan peccary MODERN SPECIES 29 SMCP (ENSCWAG00000002916) LCE7A (ENSCWAG00000002921) LCE1A (ENSCWAG00000002932) ENSCWAG00000002940 KPRP (ENSCWAG00000002949) C1orf68 (ENSCWAG00000002953) ENSCWAG00000002958 ENSCWAG00000002982 ENSCWAG00000002990 ENSCWAG00000003000 RPTN (ENSCWAG00000003036) ENSCWAG00000003046 TCHHL1 (ENSCWAG00000003058) ENSCWAG00000003065 S100A11 (ENSCWAG00000003075) S100A10 (ENSCWAG00000003083) #22 THEM5 (ENSCWAG00000003108) C2CD4D (ENSCWAG00000003120) RORC (ENSCWAG00000003140) LINGO4 (ENSCWAG00000005108) TDRKH (ENSCWAG00000005128) OAZ3 (ENSCWAG00000005285) MRPL9 (ENSCWAG00000005339) RIIAD1 (ENSCWAG00000005371) CELF3 (ENSCWAG00000005407) SNX27 (ENSCWAG00000005517) TUFT1 (ENSCWAG00000005625) CGN (ENSCWAG00000005751) POGZ (ENSCWAG00000005868) PSMB4 (ENSCWAG00000006120) SELENBP1 (ENSCWAG00000006161) Pig MODERN SPECIES 12 LCE5A (ENSSSCG00000040878) ENSSSCG00000053408 LCE3B (ENSSSCG00000061182) ENSSSCG00000051890 ENSSSCG00000053487 CRCT1 (ENSSSCG00000044768) CRNN (ENSSSCG00000006604) ENSSSCG00000042564 ENSSSCG00000030031 ENSSSCG00000054200 ENSSSCG00000044041 ENSSSCG00000006605 ENSSSCG00000038121 TCHHL1 (ENSSSCG00000006609) S100A11 (ENSSSCG00000006610) S100A10 (ENSSSCG00000006612) #22 ENSSSCG00000057672 THEM5 (ENSSSCG00000006614) C2CD4D (ENSSSCG00000021540) RORC (ENSSSCG00000026427) LINGO4 (ENSSSCG00000026259) TDRKH (ENSSSCG00000027770) OAZ3 (ENSSSCG00000027091) MRPL9 (ENSSSCG00000028343) RIIAD1 (ENSSSCG00000041677) CELF3 (ENSSSCG00000006618) SNX27 (ENSSSCG00000006619) TUFT1 (ENSSSCG00000006620) ENSSSCG00000006621 POGZ (ENSSSCG00000006622) PSMB4 (ENSSSCG00000034984) Artiodactyla_a ANCESTRAL SPECIES ENSGT00730000111580 ENSGT00940000165404 ENSGT00940000163905 ENSGT00940000163498 ENSGT00940000161842.a ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000154467.b.b.a ENSGT00940000154467.a.h.a ENSGT00940000154467.b.a ENSGT00940000154467.a.h.b ENSGT00940000154467.a.i ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172 ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000162698 ENSGT00940000160649 ENSGT00390000000698 Artiodactyla_b ANCESTRAL SPECIES ENSGT00730000111580 ENSGT00940000165404 ENSGT00940000163905 ENSGT00940000163498 ENSGT00940000161842.a ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000154467.b.b.a ENSGT00940000154467.a.h.a ENSGT00940000154467.b.a ENSGT00940000154467.a.h.b ENSGT00940000154467.a.i ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172 ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000162698 ENSGT00940000160649 ENSGT00390000000698 Pecora ANCESTRAL SPECIES 2 ENSGT00730000111580 ENSGT00940000165404 ENSGT00940000163905 ENSGT00940000163498 ENSGT00940000161842.a ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000154467.b.b.a ENSGT00940000154467.a.h.a ENSGT00940000154467.b.a ENSGT00940000154467.a.h.b ENSGT00940000154467.a.i ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172.z ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000162698 ENSGT00940000160649 ENSGT00390000000698 Yarkand deer MODERN SPECIES 12 ENSCHYG00000019176 ENSCHYG00000019223 KPRP (ENSCHYG00000019359) LCE3B (ENSCHYG00000019507) ENSCHYG00000019532 ENSCHYG00000019568 ENSCHYG00000005111 ENSCHYG00000005119 LCE5A (ENSCHYG00000005138) CRNN (ENSCHYG00000005156) ENSCHYG00000005180 ENSCHYG00000005225 ENSCHYG00000005265 TCHHL1 (ENSCHYG00000005278) ENSCHYG00000005300 S100A10 (ENSCHYG00000005318) #22 THEM4 (ENSCHYG00000005358) THEM5 (ENSCHYG00000005402) C2CD4D (ENSCHYG00000005436) RORC (ENSCHYG00000005468) LINGO4 (ENSCHYG00000005555) TDRKH (ENSCHYG00000005624) OAZ3 (ENSCHYG00000005747) MRPL9 (ENSCHYG00000005891) RIIAD1 (ENSCHYG00000006033) CELF3 (ENSCHYG00000006085) SNX27 (ENSCHYG00000006199) TUFT1 (ENSCHYG00000006362) ENSCHYG00000006682 POGZ (ENSCHYG00000006826) PSMB4 (ENSCHYG00000006978) Percora_a ANCESTRAL SPECIES 1 ENSGT00940000165404 ENSGT00940000163905 ENSGT00940000163498 ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000154467.a.h.b ENSGT00940000154467.a.h.a ENSGT00940000154467.b.a ENSGT00940000154467.a.i.a.a ENSGT00940000154467.b.b.a ENSGT00940000154467.a.i.b ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172.z ENSGT00940000154197.a.a ##22 ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000182891.a.a.b.a.a.a.b.a.b ENSGT00950000183065.B ENSGT00940000162698 ENSGT00940000160649 Siberian musk deer MODERN SPECIES 1243 ENSMMSG00000020455 ENSMMSG00000020485 ENSMMSG00000020597 ENSMMSG00000020612 ENSMMSG00000020304 YEATS4 (ENSMMSG00000020324) FRS2 (ENSMMSG00000020358) CCT2 (ENSMMSG00000020398) LRRC10 (ENSMMSG00000020422) BEST3 (ENSMMSG00000020449) RAB3IP (ENSMMSG00000020870) MYRFL (ENSMMSG00000021224) ENSMMSG00000021405 #22 CNOT2 (ENSMMSG00000021430) KCNMB4 (ENSMMSG00000021522) ENSMMSG00000021535 ##23 PTPRB (ENSMMSG00000021623) PTPRR (ENSMMSG00000022063) ENSMMSG00000022228 Bovidae ANCESTRAL SPECIES 1 ENSGT00730000111554 ENSGT00730000111580 ENSGT00940000165404 ENSGT00940000163905 ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000154467.b.b.a ENSGT00940000154467.a.h.a.a ENSGT00940000154467.a.h.a.b ENSGT00940000154467.b.a ENSGT00940000154467.a.h.b ENSGT00940000154467.a.i.b ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172.z ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00950000186450 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000182891.a.a.b.a.a.a.b.a.b ENSGT00950000183065.B ENSGT00940000162698 Caprinae ANCESTRAL SPECIES 2 ENSGT00780000122937 ENSGT00940000166289 ENSGT00950000183312 ENSGT00730000111580 ENSGT00940000165404 ENSGT00940000163905 ENSGT00940000163498 ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000154467.a.h.b ENSGT00940000154467.b.b.a ENSGT00940000154467.a.i.b ENSGT00940000164620 ENSGT00940000162966 ENSGT00940000154172.z ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00950000186450 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000162698 ENSGT00940000160649 Goat MODERN SPECIES 22 ENSCHIG00000013514 SPRR4 (ENSCHIG00000013052) ENSCHIG00000024891 ENSCHIG00000007657 ENSCHIG00000017937 KPRP (ENSCHIG00000023870) C1orf68 (ENSCHIG00000011620) LCE3B (ENSCHIG00000012019) CRNN (ENSCHIG00000025673) ENSCHIG00000020535 ENSCHIG00000026233 ENSCHIG00000018492 ENSCHIG00000005102 TCHHL1 (ENSCHIG00000010186) S100A11 (ENSCHIG00000009234) S100A10 (ENSCHIG00000017889) #22 ENSCHIG00000024791 ENSCHIG00000023394 THEM4 (ENSCHIG00000015398) THEM5 (ENSCHIG00000021133) C2CD4D (ENSCHIG00000010717) RORC (ENSCHIG00000005408) LINGO4 (ENSCHIG00000010031) TDRKH (ENSCHIG00000025326) ENSCHIG00000018414 OAZ3 (ENSCHIG00000024499) MRPL9 (ENSCHIG00000011797) RIIAD1 (ENSCHIG00000025840) CELF3 (ENSCHIG00000025847) ENSCHIG00000012675 SNX27 (ENSCHIG00000021069) Rambouillet Sheep MODERN SPECIES LCE1A (ENSOARG00020000260) ENSOARG00020000228 C1orf68 (ENSOARG00020000210) LCE3B (ENSOARG00020000187) ENSOARG00020000176 ENSOARG00020000162 ENSOARG00020000140 ENSOARG00020000109 ENSOARG00020000102 ENSOARG00020018940 ENSOARG00020018927 ENSOARG00020018856 ENSOARG00020018824 TCHHL1 (ENSOARG00020018793) S100A11 (ENSOARG00020018738) S100A10 (ENSOARG00020018696) #22 THEM4 (ENSOARG00020018617) THEM5 (ENSOARG00020018565) C2CD4D (ENSOARG00020018535) RORC (ENSOARG00020018249) LINGO4 (ENSOARG00020018213) TDRKH (ENSOARG00020018147) OAZ3 (ENSOARG00020018023) MRPL9 (ENSOARG00020017917) RIIAD1 (ENSOARG00020017857) CELF3 (ENSOARG00020017622) SNX27 (ENSOARG00020016963) TUFT1 (ENSOARG00020016156) ENSOARG00020016001 POGZ (ENSOARG00020015459) PSMB4 (ENSOARG00020015380) Bovinae ANCESTRAL SPECIES 1 ENSGT00950000183312 ENSGT00730000111554 ENSGT00730000111580 ENSGT00940000165404 ENSGT00940000163905 ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000154467.b.b.a ENSGT00940000154467.a.h.a.a ENSGT00940000154467.b.a ENSGT00940000154467.a.h.b ENSGT00940000154467.a.i.b ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172.z ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00950000186450 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000182891.a.a.b.a.a.a.b.a.b ENSGT00950000183065.B ENSGT00940000154489.B American bison MODERN SPECIES 3295 ENSBBBG00000003062 ENSBBBG00000009107 SPRR4 (ENSBBBG00000013960) ENSBBBG00000003052 ENSBBBG00000013950 KPRP (ENSBBBG00000013941) C1orf68 (ENSBBBG00000013938) LCE3B (ENSBBBG00000003036) ENSBBBG00000013936 ENSBBBG00000013932 ENSBBBG00000003027 ENSBBBG00000002896 ENSBBBG00000013898 TCHHL1 (ENSBBBG00000013893) ENSBBBG00000013884 S100A10 (ENSBBBG00000013878) #22 THEM4 (ENSBBBG00000002992) THEM5 (ENSBBBG00000002989) RORC (ENSBBBG00000013856) LINGO4 (ENSBBBG00000002969) TDRKH (ENSBBBG00000013832) ENSBBBG00000013787 OAZ3 (ENSBBBG00000013776) MRPL9 (ENSBBBG00000002933) RIIAD1 (ENSBBBG00000013726) CELF3 (ENSBBBG00000002911) SNX27 (ENSBBBG00000013687) ENSBBBG00000013643 TUFT1 (ENSBBBG00000013630) ENSBBBG00000013560 CGN (ENSBBBG00000013551) Bos ANCESTRAL SPECIES ENSGT00730000111554 ENSGT00730000111580 ENSGT00940000163498 ENSGT00970000197102 ENSGT01050000245143 ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000154467.b.b.a ENSGT00940000154467.a.h.a.a ENSGT00940000154467.b.a ENSGT00940000154467.a.h.b ENSGT00940000154467.a.i.b ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172.z ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00950000186450 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000182891.a.a.b.a.a.a.b.a.b ENSGT00950000183065.B ENSGT00940000154489.B Bos_a ANCESTRAL SPECIES 47 ENSGT00730000111554 ENSGT00730000111580 ENSGT00940000163498 ENSGT00970000197102 ENSGT01050000245143 ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000154467.b.b.a ENSGT00940000154467.a.h.a.a ENSGT00940000154467.b.a ENSGT00940000154467.a.h.b ENSGT00940000154467.a.i.b ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172.z ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00950000186450 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000154489.B ENSGT00940000162698 ENSGT00940000160649 Wild yak MODERN SPECIES 688 ENSBMUG00000024947 C1orf68 (ENSBMUG00000024927) LCE3B (ENSBMUG00000024922) ENSBMUG00000024916 ENSBMUG00000024912 ENSBMUG00000024905 ENSBMUG00000024887 ENSBMUG00000024880 ENSBMUG00000024877 ENSBMUG00000024872 ENSBMUG00000024867 RPTN (ENSBMUG00000024866) ENSBMUG00000024861 TCHHL1 (ENSBMUG00000024857) ENSBMUG00000024843 S100A10 (ENSBMUG00000024837) #22 THEM4 (ENSBMUG00000024826) THEM5 (ENSBMUG00000024818) RORC (ENSBMUG00000024807) LINGO4 (ENSBMUG00000024776) TDRKH (ENSBMUG00000024766) ENSBMUG00000024752 OAZ3 (ENSBMUG00000024748) MRPL9 (ENSBMUG00000024735) RIIAD1 (ENSBMUG00000024721) CELF3 (ENSBMUG00000024707) SNX27 (ENSBMUG00000024681) TUFT1 (ENSBMUG00000024610) CGN (ENSBMUG00000024577) POGZ (ENSBMUG00000024528) PSMB4 (ENSBMUG00000024466) Domestic yak MODERN SPECIES 22 KPRP (ENSBGRG00000003208) C1orf68 (ENSBGRG00000003205) ENSBGRG00000003177 ENSBGRG00000003168 ENSBGRG00000003159 ENSBGRG00000003154 ENSBGRG00000003149 ENSBGRG00000003128 ENSBGRG00000003103 ENSBGRG00000003087 ENSBGRG00000003077 ENSBGRG00000003029 ENSBGRG00000003014 ENSBGRG00000002999 ENSBGRG00000002990 S100A10 (ENSBGRG00000002962) #22 ENSBGRG00000002950 THEM4 (ENSBGRG00000002939) THEM5 (ENSBGRG00000002906) RORC (ENSBGRG00000002783) TDRKH (ENSBGRG00000002702) ENSBGRG00000002678 ENSBGRG00000002657 ENSBGRG00000002612 RIIAD1 (ENSBGRG00000002574) CELF3 (ENSBGRG00000002490) SNX27 (ENSBGRG00000002390) ENSBGRG00000002366 ENSBGRG00000002354 TUFT1 (ENSBGRG00000002325) ENSBGRG00000002259 Bos_b ANCESTRAL SPECIES 1 ENSGT00730000111580 ENSGT00940000165404 ENSGT00940000163905 ENSGT00970000197102 ENSGT01050000245143 ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000154467.a.h.a.b ENSGT00940000154467.b.a ENSGT00940000154467.a.i.a.a ENSGT00940000154467.a.h.b ENSGT00940000154467.a.i.b ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172.z ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00950000186450 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000182891.a.a.b.a.a.a.b.a.b ENSGT00950000183065.B ENSGT00940000154539.b.u Cow MODERN SPECIES 22 ENSBTAG00000053743 ENSBTAG00000054620 C3H1orf68 (ENSBTAG00000046138) ENSBTAG00000050431 CRCT1 (ENSBTAG00000008700) ENSBTAG00000032446 CRNN (ENSBTAG00000054069) ENSBTAG00000054258 ENSBTAG00000054333 ENSBTAG00000048997 ENSBTAG00000039357 RPTN (ENSBTAG00000039260) TCHH (ENSBTAG00000053103) TCHHL1 (ENSBTAG00000015854) S100A11 (ENSBTAG00000015145) S100A10 (ENSBTAG00000015147) #22 THEM4 (ENSBTAG00000004772) ENSBTAG00000051270 THEM5 (ENSBTAG00000000690) C2CD4D (ENSBTAG00000047528) RORC (ENSBTAG00000017405) LINGO4 (ENSBTAG00000040596) TDRKH (ENSBTAG00000021594) ENSBTAG00000050352 OAZ3 (ENSBTAG00000021591) MRPL9 (ENSBTAG00000000797) CELF3 (ENSBTAG00000019131) SNX27 (ENSBTAG00000001942) ENSBTAG00000054946 TUFT1 (ENSBTAG00000017566) ENSBTAG00000024407 Hybrid Bos Indicus MODERN SPECIES 22 LCE1A (ENSBIXG00005007992) C1orf68 (ENSBIXG00005007957) LCE3B (ENSBIXG00005000042) ENSBIXG00005007950 ENSBIXG00005007945 ENSBIXG00005007940 ENSBIXG00005007930 ENSBIXG00005005284 ENSBIXG00005029242 ENSBIXG00005001535 ENSBIXG00005001542 ENSBIXG00005001545 ENSBIXG00005001555 TCHHL1 (ENSBIXG00005001560) ENSBIXG00005005274 S100A10 (ENSBIXG00005029229) #22 THEM4 (ENSBIXG00005005256) ENSBIXG00005001633 THEM5 (ENSBIXG00005029208) C2CD4D (ENSBIXG00005001695) RORC (ENSBIXG00005001718) LINGO4 (ENSBIXG00005001805) TDRKH (ENSBIXG00005029148) ENSBIXG00005005150 OAZ3 (ENSBIXG00005001942) MRPL9 (ENSBIXG00005005138) RIIAD1 (ENSBIXG00005001997) CELF3 (ENSBIXG00005005120) SNX27 (ENSBIXG00005005088) ENSBIXG00005005039 TUFT1 (ENSBIXG00005028855) Cetacea ANCESTRAL SPECIES ENSGT00940000160475 ENSGT00940000161854 ENSGT00940000161706 ENSGT00390000000920 ENSGT00940000163114 ENSGT00940000161959 ENSGT00940000161276.C ENSGT00940000161986 ENSGT00940000161896 ENSGT00910000144329 ENSGT00940000162189 ENSGT00940000161606 ENSGT00940000162657 ENSGT00940000154467.a.h.a ENSGT00940000154172.ab.a.b.a.b ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000162698 ENSGT00940000160649 ENSGT00390000000698 Odontoceti ANCESTRAL SPECIES ENSGT00940000161706 ENSGT00390000000920 ENSGT00940000163114 ENSGT00940000161959 ENSGT00940000161276.C ENSGT00940000161986 ENSGT00940000161896 ENSGT00910000144329 ENSGT00940000162189 ENSGT00940000161606 ENSGT00940000162657 ENSGT00940000163248 ENSGT00940000164168 ENSGT00940000154467.a.h.a ENSGT00940000154172.ab.a.b.a.b ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000162698 ENSGT00940000160649 ENSGT00390000000698 Sperm whale MODERN SPECIES 15 NUP210L (ENSPCTG00005015439) NPR1 (ENSPCTG00005015896) INTS3 (ENSPCTG00005016167) SLC27A3 (ENSPCTG00005016261) GATAD2B (ENSPCTG00005016424) ENSPCTG00005016521 S100A8 (ENSPCTG00005016557) S100A12 (ENSPCTG00005016598) S100A9 (ENSPCTG00005016642) ENSPCTG00005016678 ENSPCTG00005016724 ENSPCTG00005016816 ENSPCTG00005016869 IVL (ENSPCTG00005017017) S100A11 (ENSPCTG00005017173) S100A10 (ENSPCTG00005017205) #22 THEM4 (ENSPCTG00005017250) TUFT1 (ENSPCTG00005017363) SNX27 (ENSPCTG00005017684) CELF3 (ENSPCTG00005017933) RIIAD1 (ENSPCTG00005018184) MRPL9 (ENSPCTG00005018221) OAZ3 (ENSPCTG00005018289) TDRKH (ENSPCTG00005018417) POGZ (ENSPCTG00005018518) PSMB4 (ENSPCTG00005018741) ENSPCTG00005018784 SELENBP1 (ENSPCTG00005018804) RFX5 (ENSPCTG00005019016) PI4KB (ENSPCTG00005019046) PSMD4 (ENSPCTG00005019075) Odontoceti_a ANCESTRAL SPECIES ENSGT00940000160475 ENSGT00940000161854 ENSGT00940000161706 ENSGT00390000000920 ENSGT00940000163114 ENSGT00940000161959 ENSGT00940000161276.C ENSGT00940000161986 ENSGT00940000161896 ENSGT00910000144329 ENSGT00940000162189 ENSGT00940000161606 ENSGT00940000162657 ENSGT00940000154467.a.h.a ENSGT00940000154172.ab.a.b.a.b ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000162698 ENSGT00940000160649 ENSGT00390000000698 Dolphin MODERN SPECIES 4431 S100A10 (ENSTTRG00000008647) #22 Odontoceti_b ANCESTRAL SPECIES ENSGT00940000161854 ENSGT00940000161706 ENSGT00390000000920 ENSGT00940000163114 ENSGT00940000161959 ENSGT00940000161276.C ENSGT00940000161986 ENSGT00940000161896 ENSGT00910000144329 ENSGT00940000162189 ENSGT00940000161606 ENSGT00940000162657 ENSGT00390000009110.`b.a ENSGT00940000154467.a.h.a ENSGT00940000154172.ab.a.b.a.b ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000162698 ENSGT00940000160649 ENSGT00390000000698 Vaquita MODERN SPECIES S100A16 (ENSPSNG00000001392) ENSPSNG00000001377 S100A4 (ENSPSNG00000001347) S100A5 (ENSPSNG00000001323) S100A6 (ENSPSNG00000001310) S100A8 (ENSPSNG00000001301) S100A12 (ENSPSNG00000001285) S100A9 (ENSPSNG00000001270) ENSPSNG00000001247 ENSPSNG00000001227 ENSPSNG00000001169 ENSPSNG00000001131 ENSPSNG00000001116 ENSPSNG00000001017 ENSPSNG00000000955 ENSPSNG00000000934 #22 THEM4 (ENSPSNG00000000910) THEM5 (ENSPSNG00000000888) C2CD4D (ENSPSNG00000000879) RORC (ENSPSNG00000000836) LINGO4 (ENSPSNG00000000787) TDRKH (ENSPSNG00000000758) OAZ3 (ENSPSNG00000000680) MRPL9 (ENSPSNG00000000615) RIIAD1 (ENSPSNG00000000589) CELF3 (ENSPSNG00000000542) ENSPSNG00000000510 SNX27 (ENSPSNG00000000477) TUFT1 (ENSPSNG00000000346) ENSPSNG00000000227 POGZ (ENSPSNG00000000153) Monodontidae ANCESTRAL SPECIES ENSGT00940000161854 ENSGT00940000161706 ENSGT00390000000920 ENSGT00940000163114 ENSGT00940000161959 ENSGT00940000161276.C ENSGT00940000161986 ENSGT00940000161896 ENSGT00910000144329 ENSGT00940000162189 ENSGT00940000161606 ENSGT00390000009110.`b.a ENSGT00780000122937 ENSGT00940000154467.a.h.a ENSGT00940000154172.ab.a.b.a.b ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000163537 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000162698 ENSGT00940000160649 ENSGT00390000000698 Beluga whale MODERN SPECIES 99 LCE7A (ENSDLEG00000010318) ENSDLEG00000010357 ENSDLEG00000010490 S100A10 (ENSDLEG00000010501) #22 THEM4 (ENSDLEG00000010507) THEM5 (ENSDLEG00000010525) C2CD4D (ENSDLEG00000010546) RORC (ENSDLEG00000010552) LINGO4 (ENSDLEG00000010572) TDRKH (ENSDLEG00000010583) OAZ3 (ENSDLEG00000010629) MRPL9 (ENSDLEG00000010649) RIIAD1 (ENSDLEG00000010670) CELF3 (ENSDLEG00000010719) SNX27 (ENSDLEG00000011126) TUFT1 (ENSDLEG00000011162) ENSDLEG00000011272 POGZ (ENSDLEG00000011330) PSMB4 (ENSDLEG00000011388) Narwhal MODERN SPECIES 304 ENSMMNG00015001867 S100A3 (ENSMMNG00015001881) S100A4 (ENSMMNG00015001896) S100A5 (ENSMMNG00015001912) S100A6 (ENSMMNG00015001928) S100A8 (ENSMMNG00015001948) S100A12 (ENSMMNG00015001965) S100A9 (ENSMMNG00015001982) ENSMMNG00015001997 PRR9 (ENSMMNG00015002010) ENSMMNG00015002057 ENSMMNG00015002081 LCE7A (ENSMMNG00015002124) ENSMMNG00015002275 ENSMMNG00015002355 S100A10 (ENSMMNG00015002372) #22 THEM4 (ENSMMNG00015002395) THEM5 (ENSMMNG00015002421) C2CD4D (ENSMMNG00015002439) RORC (ENSMMNG00015002466) LINGO4 (ENSMMNG00015002524) TDRKH (ENSMMNG00015002542) OAZ3 (ENSMMNG00015002678) MRPL9 (ENSMMNG00015002723) RIIAD1 (ENSMMNG00015002736) CELF3 (ENSMMNG00015002770) SNX27 (ENSMMNG00015002820) ENSMMNG00015002872 TUFT1 (ENSMMNG00015002908) ENSMMNG00015003029 POGZ (ENSMMNG00015003154) Camelidae ANCESTRAL SPECIES 6 ENSGT00910000144329 ENSGT00940000162189 ENSGT00940000161606 ENSGT00940000162657 ENSGT00700000104637 ENSGT00730000111592 ENSGT00730000111626 ENSGT00940000164168 ENSGT00940000162465 ENSGT00940000154467.b.b.b ENSGT00940000154467.b.a ENSGT00940000154467.a.h.b ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172.x.a ENSGT00940000154197.b.b #22 ENSGT00940000160047 ENSGT00940000161937 ENSGT00940000161521 ENSGT00940000162157 ENSGT00940000159364 ENSGT00940000161581 ENSGT00390000008281 ENSGT00390000003062 ENSGT00940000154716 ENSGT00950000183212.C ENSGT00950000183065.B ENSGT00940000162698 ENSGT00940000160649 ENSGT00390000000698 ENSGT00390000014244 Arabian camel MODERN SPECIES 13 ENSCDRG00005016128 ENSCDRG00005016116 ENSCDRG00005016105 C1orf68 (ENSCDRG00005016061) ENSCDRG00005016046 CRNN (ENSCDRG00005015862) ENSCDRG00005015826 ENSCDRG00005015797 ENSCDRG00005015707 ENSCDRG00005015682 ENSCDRG00005015608 ENSCDRG00005015568 ENSCDRG00005015525 ENSCDRG00005015487 ENSCDRG00005015452 ENSCDRG00005015426 #22 THEM4 (ENSCDRG00005015376) THEM5 (ENSCDRG00005015330) RORC (ENSCDRG00005015191) LINGO4 (ENSCDRG00005015167) TDRKH (ENSCDRG00005015083) OAZ3 (ENSCDRG00005014745) MRPL9 (ENSCDRG00005014548) ENSCDRG00005014479 CELF3 (ENSCDRG00005014367) SNX27 (ENSCDRG00005014065) TUFT1 (ENSCDRG00005013754) ENSCDRG00005013658 POGZ (ENSCDRG00005011049) PSMB4 (ENSCDRG00005010934) SELENBP1 (ENSCDRG00005010725) Alpaca MODERN SPECIES 4320 S100A10 (ENSVPAG00000003443) #22