Euarchontoglires	ANCESTRAL SPECIES		ENSGT00950000183301	ENSGT00730000111554 #15	ENSGT00730000111580 #16	ENSGT00940000163905 #19	ENSGT00940000163498 #20	ENSGT00730000113097	ENSGT00940000161842.a #17	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000163983	ENSGT00940000162966	ENSGT00940000154172	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00730000111554 #15	ENSGT00730000111580 #16	ENSGT00940000161842.b #13	ENSGT00940000163498 #20	ENSGT00940000163905 #19	ENSGT00940000161842.a #17	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000170498	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000163983	ENSGT00940000162966	ENSGT00940000154172	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Glires	ANCESTRAL SPECIES		ENSGT00730000111554 #15	ENSGT00730000111580 #16	ENSGT00940000161842.b #13	ENSGT00940000163498 #20	ENSGT00940000163905 #19	ENSGT00940000161842.a #17	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000170498	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000163983	ENSGT00940000162966	ENSGT00940000154172	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Rodentia	ANCESTRAL SPECIES		ENSGT00730000111580 #16	ENSGT00940000161842.b #13	ENSGT00940000163498 #20	ENSGT00940000163905 #19	ENSGT00940000161842.a #17	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000170498	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000163983	ENSGT00940000164620	ENSGT00940000162966	ENSGT00940000154172	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Rodentia_A	ANCESTRAL SPECIES		ENSGT01050000246051	ENSGT01020000230889	ENSGT00780000122937	ENSGT00730000111554 #15	ENSGT00730000111580 #16	ENSGT00940000161842.b #13	ENSGT00940000163498 #20	ENSGT00940000163905 #19	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000170498	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000163983	ENSGT00940000154172	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000154489.B	ENSGT00940000162698 #33	ENSGT00940000160649 #34
Sciuridae	ANCESTRAL SPECIES		ENSGT01020000230889	ENSGT00780000122937	ENSGT00730000111554 #15	ENSGT00730000111580 #16	ENSGT00940000161842.b #13	ENSGT00940000163498 #20	ENSGT00940000163905 #19	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000170498.a	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000163983	ENSGT00940000154172	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000154489.B	ENSGT00940000162698 #33	ENSGT00940000160649 #34
Marmotini	ANCESTRAL SPECIES	33	ENSGT00940000161986	ENSGT00940000161896	ENSGT00940000163629	ENSGT00910000144375	ENSGT00910000144329	ENSGT00940000162189	ENSGT00940000161606	ENSGT00940000162349	ENSGT00940000162657 #7	ENSGT00940000163019.a #9	ENSGT00940000162465	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000154172	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Marmotini_b	ANCESTRAL SPECIES	77												ENSGT00940000162465	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154172	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Squirrel	MODERN SPECIES	180	PGLYRP3 (ENSSTOG00000005008) #7	ENSSTOG00000008523 #8	ENSSTOG00000006819 #9	ENSSTOG00000032058 #10	ENSSTOG00000022826 #11	ENSSTOG00000000156 #12	ENSSTOG00000030434 #13	ENSSTOG00000033823 #14	KPRP (ENSSTOG00000000154) #15	C1orf68 (ENSSTOG00000033510) #16	LCE5A (ENSSTOG00000023067) #17	ENSSTOG00000029937 #18	ENSSTOG00000019712 #19	ENSSTOG00000034972 #20	ENSSTOG00000033111 #21	S100A10 (ENSSTOG00000023215) #22	THEM4 (ENSSTOG00000010762) #23	THEM5 (ENSSTOG00000010754) #24	RORC (ENSSTOG00000019386) #25	LINGO4 (ENSSTOG00000015241) #26	TDRKH (ENSSTOG00000006506) #27	OAZ3 (ENSSTOG00000031407) #28	RIIAD1 (ENSSTOG00000034652) #29	CELF3 (ENSSTOG00000022934) #30	SNX27 (ENSSTOG00000005289) #31	TUFT1 (ENSSTOG00000003909) #32	ENSSTOG00000003867 #33	POGZ (ENSSTOG00000012056) #34	PSMB4 (ENSSTOG00000012054) #35	SELENBP1 (ENSSTOG00000027196) #36	RFX5 (ENSSTOG00000013246) #37
Alpin marmot	MODERN SPECIES	85	ENSMMMG00000018192	ENSMMMG00000018196 #11	ENSMMMG00000018197	LCE7A (ENSMMMG00000018216)	C1orf68 (ENSMMMG00000018221) #16	ENSMMMG00000018223	ENSMMMG00000018241	LCE5A (ENSMMMG00000018245) #17	ENSMMMG00000018247	ENSMMMG00000018264	ENSMMMG00000018274	ENSMMMG00000018282	ENSMMMG00000018292	RPTN (ENSMMMG00000018298)	S100A11 (ENSMMMG00000018305)	S100A10 (ENSMMMG00000018313) #22	THEM4 (ENSMMMG00000018374) #23	THEM5 (ENSMMMG00000018379) #24	RORC (ENSMMMG00000018387) #25	LINGO4 (ENSMMMG00000018432) #26	TDRKH (ENSMMMG00000018437) #27	OAZ3 (ENSMMMG00000018483) #28	ENSMMMG00000018501	CELF3 (ENSMMMG00000018558) #30	SNX27 (ENSMMMG00000018570) #31	TUFT1 (ENSMMMG00000018579) #32	ENSMMMG00000018638	POGZ (ENSMMMG00000018654) #34	PSMB4 (ENSMMMG00000018764) #35	SELENBP1 (ENSMMMG00000018768) #36	RFX5 (ENSMMMG00000018801) #37
Eurasian red squirrel	MODERN SPECIES		ENSSVLG00005009341	ENSSVLG00005009331	ENSSVLG00005009194 #20	ENSSVLG00005003674 #19	ENSSVLG00005003667 #19	CRNN (ENSSVLG00005003616)	ENSSVLG00005003594	ENSSVLG00005003582	ENSSVLG00005003567	ENSSVLG00005003502	HRNR (ENSSVLG00005003432)	ENSSVLG00005003410	ENSSVLG00005003377	ENSSVLG00005003358	ENSSVLG00005003347	S100A10 (ENSSVLG00005003336) #22	THEM4 (ENSSVLG00005003315) #23	THEM5 (ENSSVLG00005003303) #24	C2CD4D (ENSSVLG00005003299)	RORC (ENSSVLG00005003240) #25	LINGO4 (ENSSVLG00005003205) #26	TDRKH (ENSSVLG00005003148) #27	OAZ3 (ENSSVLG00005003077) #28	ENSSVLG00005003027	RIIAD1 (ENSSVLG00005002999) #29	CELF3 (ENSSVLG00005002946) #30	SNX27 (ENSSVLG00005002849) #31	TUFT1 (ENSSVLG00005002739) #32	CGN (ENSSVLG00005002674)	POGZ (ENSSVLG00005002594) #34	PSMB4 (ENSSVLG00005002561) #35
Hystricomorpha	ANCESTRAL SPECIES																	ENSGT00940000154197.b.b #22
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	22	WDR75 (ENSHGLG00000011577)	SLC40A1 (ENSHGLG00000008999)	ASDURF (ENSHGLG00000029891)	ENSHGLG00000032663	ENSHGLG00000039700	ENSHGLG00000040561	FLACC1 (ENSHGLG00000007412)	ENSHGLG00000037940	ENSHGLG00000004915	ENSHGLG00000004703	ENSHGLG00000034754	ENSHGLG00000003940	ENSHGLG00000002790	ENSHGLG00000042696	ENSHGLG00000008965	ENSHGLG00000040344 #22	ENSHGLG00000049153	ANKRD44 (ENSHGLG00000008625)	ENSHGLG00000008285	ENSHGLG00000038699	HSPD1 (ENSHGLG00000007927)	ENSHGLG00000042669	MOB4 (ENSHGLG00000050196)	RFTN2 (ENSHGLG00000017636)	MARS2 (ENSHGLG00000049320)	BOLL (ENSHGLG00000017562)	PLCL1 (ENSHGLG00000015970)	ENSHGLG00000043283	SATB2 (ENSHGLG00000015892)	ENSHGLG00000020697	C2orf69 (ENSHGLG00000040936)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	19	LMAN1L (ENSHGLG00000000444)	ULK3 (ENSHGLG00000000809)	SCAMP2 (ENSHGLG00000001630)	MPI (ENSHGLG00000000351)	FAM219B (ENSHGLG00000048731)	COX5A (ENSHGLG00000047174)	ENSHGLG00000047540	RPP25 (ENSHGLG00000039962)	SCAMP5 (ENSHGLG00000002763)	PPCDC (ENSHGLG00000004861)	C15orf39 (ENSHGLG00000033459)	COMMD4 (ENSHGLG00000002044)	NEIL1 (ENSHGLG00000043720)	MAN2C1 (ENSHGLG00000000690)	SIN3A (ENSHGLG00000015595)	ENSHGLG00000042955 #22	PTPN9 (ENSHGLG00000001900)	ENSHGLG00000036416	IMP3 (ENSHGLG00000047594)	SNX33 (ENSHGLG00000032746)	CSPG4 (ENSHGLG00000000788)	ENSHGLG00000002838	ENSHGLG00000001339	HMG20A (ENSHGLG00000000560)	PEAK1 (ENSHGLG00000001872)	ENSHGLG00000020096	TSPAN3 (ENSHGLG00000048829)	PSTPIP1 (ENSHGLG00000002685)	RCN2 (ENSHGLG00000040045)	SCAPER (ENSHGLG00000001955)	ISL2 (ENSHGLG00000001431)
Naked mole-rat female	MODERN SPECIES	23	CLEC4F (ENSHGLG00000015223)	CD207 (ENSHGLG00000017278)	VAX2 (ENSHGLG00000038768)	ATP6V1B1 (ENSHGLG00000034993)	ANKRD53 (ENSHGLG00000015981)	TEX261 (ENSHGLG00000047338)	ENSHGLG00000015917	ENSHGLG00000039175	ENSHGLG00000050708	ZNF638 (ENSHGLG00000015789)	DYSF (ENSHGLG00000007256)	ENSHGLG00000043383	CYP26B1 (ENSHGLG00000016604)	EXOC6B (ENSHGLG00000011639)	ENSHGLG00000039406	ENSHGLG00000032593 #22	ENSHGLG00000040821	ENSHGLG00000006121	SPR (ENSHGLG00000041182)	EMX1 (ENSHGLG00000036309)	SFXN5 (ENSHGLG00000007851)	RAB11FIP5 (ENSHGLG00000016021)	SMYD5 (ENSHGLG00000015439)	PRADC1 (ENSHGLG00000015353)	CCT7 (ENSHGLG00000011761)	FBXO41 (ENSHGLG00000010102)	EGR4 (ENSHGLG00000009021)	ENSHGLG00000039055	ENSHGLG00000044724	DUSP11 (ENSHGLG00000012958)	ENSHGLG00000012325
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	22	ENSHGLG00000000458	LRAT (ENSHGLG00000045268)	ENSHGLG00000032409	ENSHGLG00000002344	ENSHGLG00000038593	ENSHGLG00000001875	ENSHGLG00000049616	ENSHGLG00000000870	ENSHGLG00000042451	ENSHGLG00000049550	ENSHGLG00000019770	ENSHGLG00000001548	ENSHGLG00000047631	IL15 (ENSHGLG00000038275)	ENSHGLG00000007865	ENSHGLG00000042945 #22	ZNF330 (ENSHGLG00000000725)	ENSHGLG00000048416	RNF150 (ENSHGLG00000000594)	ENSHGLG00000049997	ENSHGLG00000001009	ENSHGLG00000044620	ENSHGLG00000048262	ENSHGLG00000000200	ENSHGLG00000000179	ENSHGLG00000000166	ELMOD2 (ENSHGLG00000043621)	CLGN (ENSHGLG00000000153)	SCOC (ENSHGLG00000035798)	MAML3 (ENSHGLG00000039990)	MGST2 (ENSHGLG00000040336)
Naked mole-rat female	MODERN SPECIES	26	WDTC1 (ENSHGLG00000013846)	ENSHGLG00000044722	SLC9A1 (ENSHGLG00000036829)	ENSHGLG00000047714	TENT5B (ENSHGLG00000034048)	TRNP1 (ENSHGLG00000041801)	KDF1 (ENSHGLG00000012217)	NUDC (ENSHGLG00000011404)	NR0B2 (ENSHGLG00000032117)	GPATCH3 (ENSHGLG00000012492)	GPN2 (ENSHGLG00000012257)	SFN (ENSHGLG00000033145)	ZDHHC18 (ENSHGLG00000018702)	PIGV (ENSHGLG00000019195)	ARID1A (ENSHGLG00000010530)	ENSHGLG00000033713 #22	RPS6KA1 (ENSHGLG00000013826)	ENSHGLG00000043190	DHDDS (ENSHGLG00000015297)	ENSHGLG00000050208	ENSHGLG00000043841	CRYBG2 (ENSHGLG00000014835)	ENSHGLG00000042566	UBXN11 (ENSHGLG00000014636)	SH3BGRL3 (ENSHGLG00000014565)	CEP85 (ENSHGLG00000012227)	CNKSR1 (ENSHGLG00000012930)	ENSHGLG00000012204	ZNF593 (ENSHGLG00000011938)	C1orf232 (ENSHGLG00000013042)	FAM110D (ENSHGLG00000011546)
Naked mole-rat female	MODERN SPECIES	26	CASP9 (ENSHGLG00000019310)	ENSHGLG00000016895	CTRC (ENSHGLG00000018486)	EFHD2 (ENSHGLG00000046486)	FHAD1 (ENSHGLG00000018196)	TMEM51 (ENSHGLG00000013366)	ENSHGLG00000009940	ENSHGLG00000035804	CPT2 (ENSHGLG00000003070)	ENSHGLG00000002034	ENSHGLG00000001648	LRP8 (ENSHGLG00000001818)	ENSHGLG00000041952	NDC1 (ENSHGLG00000001547)	ENSHGLG00000046232	ENSHGLG00000042903 #22	ENSHGLG00000040583	ENSHGLG00000001352	LRRC42 (ENSHGLG00000000742)	ENSHGLG00000043225	TCEANC2 (ENSHGLG00000046573)	ENSHGLG00000007958	CYB5RL (ENSHGLG00000001600)	MRPL37 (ENSHGLG00000001515)	SSBP3 (ENSHGLG00000000619)	ACOT11 (ENSHGLG00000001977)	FAM151A (ENSHGLG00000038314)	ENSHGLG00000046321	ENSHGLG00000005631	PIK3CD (ENSHGLG00000005279)	CLSTN1 (ENSHGLG00000004884)
Naked mole-rat female	MODERN SPECIES	10	ENSHGLG00000032534	TBX15 (ENSHGLG00000050081)	ENSHGLG00000038215	ENSHGLG00000042619	HSD3B1 (ENSHGLG00000033840)	ENSHGLG00000006464	ENSHGLG00000042386	ENSHGLG00000049042	ENSHGLG00000015205	ENSHGLG00000016365	ENSHGLG00000004729	ENSHGLG00000001174	ENSHGLG00000033772	ENSHGLG00000005182	ENSHGLG00000039288	ENSHGLG00000037846 #22	ENSHGLG00000038214	CHD1L (ENSHGLG00000008933)	ENSHGLG00000018478	ENSHGLG00000048596	ENSHGLG00000034080	BCL9 (ENSHGLG00000013904)	ENSHGLG00000004803	ENSHGLG00000043134	GJA5 (ENSHGLG00000037183)	ENSHGLG00000006450	GJA8 (ENSHGLG00000020482)	ENSHGLG00000008167	ENSHGLG00000009553	ENSHGLG00000049549	ENSHGLG00000041766
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	31	F8 (ENSHGLG00000034300)	ENSHGLG00000000581	MPP1 (ENSHGLG00000000629)	DKC1 (ENSHGLG00000000649)	ENSHGLG00000000701	ENSHGLG00000049532	ENSHGLG00000046464	ENSHGLG00000049566	ENSHGLG00000047737	ENSHGLG00000002010	ENSHGLG00000035389	ENSHGLG00000043323	IDS (ENSHGLG00000049970)	AFF2 (ENSHGLG00000000634)	ENSHGLG00000028863	ENSHGLG00000019716 #22	FMR1 (ENSHGLG00000000576)	ENSHGLG00000040472 #22	ENSHGLG00000045634	SLITRK2 (ENSHGLG00000007935)	ENSHGLG00000035566	ENSHGLG00000032750	ENSHGLG00000038876	ENSHGLG00000049672	ENSHGLG00000036529	ENSHGLG00000037583	ENSHGLG00000004407	ENSHGLG00000039059	SOX3 (ENSHGLG00000039208)	ENSHGLG00000047068	ATP11C (ENSHGLG00000007759)
Naked mole-rat female	MODERN SPECIES	31	MCF2 (ENSHGLG00000013161)	ENSHGLG00000009095	ATP11C (ENSHGLG00000007759)	ENSHGLG00000047068	SOX3 (ENSHGLG00000039208)	ENSHGLG00000039059	ENSHGLG00000004407	ENSHGLG00000037583	ENSHGLG00000036529	ENSHGLG00000049672	ENSHGLG00000038876	ENSHGLG00000032750	ENSHGLG00000035566	SLITRK2 (ENSHGLG00000007935)	ENSHGLG00000045634	ENSHGLG00000040472 #22	FMR1 (ENSHGLG00000000576)	ENSHGLG00000019716 #22	ENSHGLG00000028863	AFF2 (ENSHGLG00000000634)	IDS (ENSHGLG00000049970)	ENSHGLG00000043323	ENSHGLG00000035389	ENSHGLG00000002010	ENSHGLG00000047737	ENSHGLG00000049566	ENSHGLG00000046464	ENSHGLG00000049532	ENSHGLG00000000701	DKC1 (ENSHGLG00000000649)	MPP1 (ENSHGLG00000000629)
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000032329	ENSHGLG00000045854	FOXO4 (ENSHGLG00000013305)	ENSHGLG00000004894	ENSHGLG00000010744	MED12 (ENSHGLG00000005421)	NLGN3 (ENSHGLG00000009982)	GJB1 (ENSHGLG00000004743)	ZMYM3 (ENSHGLG00000014526)	NONO (ENSHGLG00000005550)	ITGB1BP2 (ENSHGLG00000015433)	ENSHGLG00000050039	ENSHGLG00000050796	ENSHGLG00000014818	ENSHGLG00000031947	ENSHGLG00000049149 #22	ENSHGLG00000040608	ENSHGLG00000007209	ENSHGLG00000042327	ENSHGLG00000050614	ENSHGLG00000008499	ENSHGLG00000034062	ENSHGLG00000006799	ENSHGLG00000037492	ENSHGLG00000050364	ENSHGLG00000047657	RTL5 (ENSHGLG00000043760)	NHSL2 (ENSHGLG00000004791)	ENSHGLG00000033358	PIN4 (ENSHGLG00000043461)	ERCC6L (ENSHGLG00000016594)
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000162349	ENSGT00940000162657 #7	ENSGT00700000104637	ENSGT00730000111592	ENSGT00730000111554 #15	ENSGT00940000161842.a #17	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000163983	ENSGT00940000164620	ENSGT00940000162966	ENSGT00940000154172	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00940000161606	ENSGT00940000162349	ENSGT00940000162657 #7	ENSGT00700000104637	ENSGT00730000111592	ENSGT00730000111554 #15	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000163983	ENSGT00940000164620	ENSGT00940000162966	ENSGT00940000154172	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Muroidea	ANCESTRAL SPECIES	6	ENSGT00780000122937	ENSGT00940000169512 #12	ENSGT00730000111580 #16	ENSGT00940000163710	ENSGT01010000222956	ENSGT01100000265211	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000163983	ENSGT00940000164620	ENSGT00940000162966	ENSGT00940000154172	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00730000111554 #15	ENSGT00730000111580 #16	ENSGT00940000163905 #19	ENSGT00940000163710.q.a	ENSGT01010000222956	ENSGT00860000136028	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000163983	ENSGT00940000164620	ENSGT00940000162966	ENSGT00940000154172	ENSGT00940000154197.b.b #22	ENSGT00940000154376.b.e.a	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00780000122937	ENSGT00940000167222	ENSGT01050000245068.A	ENSGT00940000161842.a.c #17	ENSGT00730000111554 #15	ENSGT00730000111580 #16	ENSGT00940000163905 #19	ENSGT01100000265211	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.a	ENSGT00940000163983	ENSGT00940000162966	ENSGT00940000154172	ENSGT00940000154197.b.b #22	ENSGT00940000154376.b.e.a	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00730000114093	ENSGT00780000122937	ENSGT00940000167222	ENSGT00940000161842.a.c #17	ENSGT00730000111554 #15	ENSGT00730000111580 #16	ENSGT00940000163905 #19	ENSGT01100000265211	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.a	ENSGT00940000164620	ENSGT00940000162966	ENSGT00940000154172	ENSGT00940000154197.b.b #22	ENSGT00940000154376.b.e.a	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	19	ENSPEMG00000002108	Kprp (ENSPEMG00000003567) #15	ENSPEMG00000007888	ENSPEMG00000024567	ENSPEMG00000028390	ENSPEMG00000030519	ENSPEMG00000025047 #19	Crct1 (ENSPEMG00000025851)	Lce1m (ENSPEMG00000028998)	Crnn (ENSPEMG00000015891)	ENSPEMG00000027135	ENSPEMG00000029220	ENSPEMG00000009460	Tchhl1 (ENSPEMG00000023251)	S100a11 (ENSPEMG00000027141)	ENSPEMG00000028727 #22	ENSPEMG00000028073	ENSPEMG00000010771	Them4 (ENSPEMG00000017604) #23	Them5 (ENSPEMG00000009567) #24	C2cd4d (ENSPEMG00000029177)	Rorc (ENSPEMG00000019266) #25	Lingo4 (ENSPEMG00000002211) #26	Tdrkh (ENSPEMG00000011171) #27	Oaz3 (ENSPEMG00000008922) #28	Mrpl9 (ENSPEMG00000011374)	Riiad1 (ENSPEMG00000019003) #29	Celf3 (ENSPEMG00000001184) #30	Snx27 (ENSPEMG00000009710) #31	Tuft1 (ENSPEMG00000014366) #32	ENSPEMG00000015782 #33
Northern American deer mouse	MODERN SPECIES	11	Hacd4 (ENSPEMG00000016283)	ENSPEMG00000013210	Focad (ENSPEMG00000000124)	ENSPEMG00000008739	ENSPEMG00000029974	Slc24a2 (ENSPEMG00000019954)	Acer2 (ENSPEMG00000020047)	ENSPEMG00000020062	Dennd4c (ENSPEMG00000020187)	Plin2 (ENSPEMG00000020242)	Haus6 (ENSPEMG00000028376)	Rraga (ENSPEMG00000012776)	Saxo1 (ENSPEMG00000000040)	Adamtsl1 (ENSPEMG00000005320)	Sh3gl2 (ENSPEMG00000010691)	ENSPEMG00000012875 #22	Cntln (ENSPEMG00000013809)	Bnc2 (ENSPEMG00000006553)	ENSPEMG00000026637	Ccdc171 (ENSPEMG00000009589)	Psip1 (ENSPEMG00000015309)	Snapc3 (ENSPEMG00000015671)	Ttc39b (ENSPEMG00000017249)	ENSPEMG00000028674	Frem1 (ENSPEMG00000007771)	Cer1 (ENSPEMG00000013498)	Zdhhc21 (ENSPEMG00000011202)	Nfib (ENSPEMG00000015036)	Mpdz (ENSPEMG00000002221)	Lurap1l (ENSPEMG00000028913)	ENSPEMG00000026523
Prairie vole	MODERN SPECIES	99	ENSMOCG00000005972 #17	ENSMOCG00000004279	ENSMOCG00000005788 #17	Kprp (ENSMOCG00000005848) #15	ENSMOCG00000005487	2310050C09Rik (ENSMOCG00000000973) #16	ENSMOCG00000008570 #19	ENSMOCG00000010107 #19	ENSMOCG00000021258 #19	ENSMOCG00000004193	Crnn (ENSMOCG00000019488)	ENSMOCG00000022052	ENSMOCG00000000629	ENSMOCG00000007199	Tchhl1 (ENSMOCG00000021433)	S100a10 (ENSMOCG00000004139) #22	ENSMOCG00000022418	ENSMOCG00000022803	ENSMOCG00000015444	ENSMOCG00000016759
Cricetinae	ANCESTRAL SPECIES	13	ENSGT01050000245068.A	ENSGT01070000254540	ENSGT01050000245068.B	ENSGT00940000161842.a.c #17	ENSGT00730000111554 #15	ENSGT00730000111580 #16	ENSGT00940000163905 #19	ENSGT01100000266463	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.a	ENSGT00940000163983	ENSGT00940000162966	ENSGT00940000154172	ENSGT00940000154197.b.b #22
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	714	ENSMAUG00000008992	ENSMAUG00000014317	ENSMAUG00000021993	ENSMAUG00000018162	ENSMAUG00000018011	Kprp (ENSMAUG00000009358) #15	ENSMAUG00000009030	2310050C09Rik (ENSMAUG00000021982) #16	ENSMAUG00000008983 #19	ENSMAUG00000009303 #19	ENSMAUG00000009142	ENSMAUG00000003498	Crnn (ENSMAUG00000001754)	Tchhl1 (ENSMAUG00000017940)	S100a11 (ENSMAUG00000019826)	ENSMAUG00000021385 #22
Golden Hamster	MODERN SPECIES	740							ENSMAUG00000006579	Tyrp1 (ENSMAUG00000017874)	Lurap1l (ENSMAUG00000014887)	ENSMAUG00000005222	ENSMAUG00000003146	Nfib (ENSMAUG00000007632)	Zdhhc21 (ENSMAUG00000000495)	Cer1 (ENSMAUG00000013311)	Frem1 (ENSMAUG00000014922)	ENSMAUG00000011212 #22	Ttc39b (ENSMAUG00000008949)	ENSMAUG00000002025	ENSMAUG00000008531	Psip1 (ENSMAUG00000014312)	Ccdc171 (ENSMAUG00000013269)	Bnc2 (ENSMAUG00000017038)	Cntln (ENSMAUG00000016827)
Chinese hamster chok1gshd	MODERN SPECIES	352	Kprp (ENSCGRG00001011269) #15	ENSCGRG00001013323	ENSCGRG00001011007	ENSCGRG00001011825 #19	ENSCGRG00001011142 #19	ENSCGRG00001011125 #19	ENSCGRG00001010698	ENSCGRG00001010946	Crnn (ENSCGRG00001009912)	Flg2 (ENSCGRG00001004341)	ENSCGRG00001024443	ENSCGRG00001013639	ENSCGRG00001017115	Tchhl1 (ENSCGRG00001014681)	S100a11 (ENSCGRG00001023641)	S100a10 (ENSCGRG00001013243) #22
Murinae	ANCESTRAL SPECIES	5	ENSGT00960000186821	ENSGT00730000111554 #15	ENSGT00730000111580 #16	ENSGT00940000163710.q.a	ENSGT01010000222956	ENSGT00860000136028	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000163983	ENSGT00940000164620	ENSGT00940000162966	ENSGT00940000154172	ENSGT00940000154197.b.b #22	ENSGT00940000154376.b.e.a.k	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34
Mus	ANCESTRAL SPECIES	7	ENSGT00730000111554 #15	ENSGT00950000183531.b	ENSGT00730000111580 #16	ENSGT00940000163710.q.a.b.a.a	ENSGT00940000163710.q.a.a	ENSGT01010000222956	ENSGT00860000136028	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000164620	ENSGT00940000162966	ENSGT00940000154172	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Mus_A	ANCESTRAL SPECIES	9	ENSGT00950000183531.b	ENSGT00730000111580 #16	ENSGT00940000163710.q.a.b.a.a	ENSGT00940000163710.q.a.a	ENSGT01010000222956	ENSGT00860000136028	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000153096.b.d.s.b	ENSGT00940000164620	ENSGT00940000162966	ENSGT00940000154172	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Ryukyu mouse	MODERN SPECIES	12	MGP_CAROLIEiJ_G0025289	MGP_CAROLIEiJ_G0025290	MGP_CAROLIEiJ_G0025291	MGP_CAROLIEiJ_G0025292	Crct1 (MGP_CAROLIEiJ_G0025293)	Lce1m (MGP_CAROLIEiJ_G0025294)	Crnn (MGP_CAROLIEiJ_G0025295)	MGP_CAROLIEiJ_G0025296	Flg (MGP_CAROLIEiJ_G0025297)	MGP_CAROLIEiJ_G0025298	MGP_CAROLIEiJ_G0025299	MGP_CAROLIEiJ_G0025300	MGP_CAROLIEiJ_G0025301	Tchhl1 (MGP_CAROLIEiJ_G0025302)	S100a11 (MGP_CAROLIEiJ_G0025303)	S100a10 (MGP_CAROLIEiJ_G0025304) #22	MGP_CAROLIEiJ_G0025305 #23	MGP_CAROLIEiJ_G0025306 #24	C2cd4d (MGP_CAROLIEiJ_G0025307)	Rorc (MGP_CAROLIEiJ_G0025308) #25	Lingo4 (MGP_CAROLIEiJ_G0025309) #26	Tdrkh (MGP_CAROLIEiJ_G0025310) #27	MGP_CAROLIEiJ_G0025311 #28	Mrpl9 (MGP_CAROLIEiJ_G0025312)	Riiad1 (MGP_CAROLIEiJ_G0025313) #29	Celf3 (MGP_CAROLIEiJ_G0025314) #30	Snx27 (MGP_CAROLIEiJ_G0025315) #31	Tuft1 (MGP_CAROLIEiJ_G0025316) #32	MGP_CAROLIEiJ_G0025317	MGP_CAROLIEiJ_G0025318 #33	Pogz (MGP_CAROLIEiJ_G0025319) #34
Mus_B	ANCESTRAL SPECIES	8	ENSGT00950000183531.b	ENSGT00730000111580 #16	ENSGT00940000163710.q.a.b.a.a	ENSGT00940000163710.q.a.a	ENSGT01010000222956	ENSGT00860000136028	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000153096.b.d.s.b	ENSGT00940000164620	ENSGT00940000162966	ENSGT00940000154172.kb.a	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Mouse	MODERN SPECIES	12	Lce3c (ENSMUSG00000045475)	Lce3d (ENSMUSG00000043472)	Lce3e (ENSMUSG00000074433)	Lce3f (ENSMUSG00000068885)	Crct1 (ENSMUSG00000027913)	Lce1m (ENSMUSG00000027912)	Tdpoz8 (ENSMUSG00000096879)	Crnn (ENSMUSG00000078657)	Flg2 (ENSMUSG00000049133)	Flg (ENSMUSG00000102439)	Hrnr (ENSMUSG00000041991)	Rptn (ENSMUSG00000041984)	Tchh (ENSMUSG00000052415)	Tchhl1 (ENSMUSG00000027908)	S100a11 (ENSMUSG00000027907)	S100a10 (ENSMUSG00000041959) #22	Tdpoz2 (ENSMUSG00000103362)	Tdpoz1 (ENSMUSG00000094084)	Gm5773 (ENSMUSG00000068879)	Tdpoz4 (ENSMUSG00000060256)	Tdpoz3 (ENSMUSG00000058005)	Tdpoz9-ps1 (ENSMUSG00000095822)	Tdpoz5 (ENSMUSG00000094163)	Tdpoz9 (ENSMUSG00000094328)	Tdpoz7 (ENSMUSG00000095251)	Spopfm2 (ENSMUSG00000074424)	Spopfm3 (ENSMUSG00000090268)	Them4 (ENSMUSG00000028145) #23	Them5 (ENSMUSG00000028148) #24	C2cd4d (ENSMUSG00000091648)	Rorc (ENSMUSG00000028150) #25
Mus_C	ANCESTRAL SPECIES	6	ENSGT00950000184448	ENSGT00730000111554 #15	ENSGT00950000183531.b	ENSGT00730000111580 #16	ENSGT00940000163710.q.a.a	ENSGT01010000222956	ENSGT00860000136028	ENSGT00940000162465	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000153096.b.d.s.b	ENSGT00940000164620	ENSGT00940000162966	ENSGT00940000154172.kb.a	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Steppe mouse	MODERN SPECIES	2268										ENSMSIG00000013333	ENSMSIG00000013325	ENSMSIG00000013304	ENSMSIG00000013297	Tchhl1 (ENSMSIG00000013282)	ENSMSIG00000013266	S100a10 (ENSMSIG00000013252) #22
spretus	MODERN SPECIES	12	Lce1k (MGP_SPRETEiJ_G0026229)	Kprp (MGP_SPRETEiJ_G0026231) #15	Lce1l (MGP_SPRETEiJ_G0026232)	2310050C09Rik (MGP_SPRETEiJ_G0026233) #16	MGP_SPRETEiJ_G0026234	MGP_SPRETEiJ_G0026235	Crct1 (MGP_SPRETEiJ_G0026236)	Lce1m (MGP_SPRETEiJ_G0026237)	Crnn (MGP_SPRETEiJ_G0026238)	Flg (MGP_SPRETEiJ_G0026240)	MGP_SPRETEiJ_G0026241	MGP_SPRETEiJ_G0026242	Tchh (MGP_SPRETEiJ_G0026243)	Tchhl1 (MGP_SPRETEiJ_G0026244)	MGP_SPRETEiJ_G0026245	S100a10 (MGP_SPRETEiJ_G0026246) #22	Them4 (MGP_SPRETEiJ_G0026247) #23	Them5 (MGP_SPRETEiJ_G0026248) #24	C2cd4d (MGP_SPRETEiJ_G0026249)	Rorc (MGP_SPRETEiJ_G0026250) #25	Lingo4 (MGP_SPRETEiJ_G0026251) #26	Tdrkh (MGP_SPRETEiJ_G0026252) #27	MGP_SPRETEiJ_G0026253 #28	Mrpl9 (MGP_SPRETEiJ_G0026254)	Riiad1 (MGP_SPRETEiJ_G0026255) #29	Celf3 (MGP_SPRETEiJ_G0026256) #30	Snx27 (MGP_SPRETEiJ_G0026257) #31	MGP_SPRETEiJ_G0026258 #32	MGP_SPRETEiJ_G0026259	MGP_SPRETEiJ_G0026260 #33	Pogz (MGP_SPRETEiJ_G0026261) #34
Shrew mouse	MODERN SPECIES	17	Lce1l (MGP_PahariEiJ_G0026731)	2310050C09Rik (MGP_PahariEiJ_G0026732) #16	MGP_PahariEiJ_G0026733	MGP_PahariEiJ_G0026734	MGP_PahariEiJ_G0026735	MGP_PahariEiJ_G0026736	MGP_PahariEiJ_G0026737	MGP_PahariEiJ_G0026738	Crct1 (MGP_PahariEiJ_G0026739)	Lce1m (MGP_PahariEiJ_G0026740)	Crnn (MGP_PahariEiJ_G0026741)	MGP_PahariEiJ_G0026742	MGP_PahariEiJ_G0026744	Tchhl1 (MGP_PahariEiJ_G0026745)	S100a11 (MGP_PahariEiJ_G0026746)	S100a10 (MGP_PahariEiJ_G0026747) #22	Them4 (MGP_PahariEiJ_G0026748) #23	Them5 (MGP_PahariEiJ_G0026749) #24	C2cd4d (MGP_PahariEiJ_G0026750)	Rorc (MGP_PahariEiJ_G0026751) #25	Lingo4 (MGP_PahariEiJ_G0026752) #26	Tdrkh (MGP_PahariEiJ_G0026753) #27	MGP_PahariEiJ_G0026754 #28	Mrpl9 (MGP_PahariEiJ_G0026755)	MGP_PahariEiJ_G0026756 #29	Celf3 (MGP_PahariEiJ_G0026757) #30	Snx27 (MGP_PahariEiJ_G0026758) #31	Tuft1 (MGP_PahariEiJ_G0026759) #32	MGP_PahariEiJ_G0026760 #33	Pogz (MGP_PahariEiJ_G0026761) #34	Psmb4 (MGP_PahariEiJ_G0026762) #35
Rat	MODERN SPECIES	11	LOC120100589 (ENSRNOG00000064953)	Lce3fl1 (ENSRNOG00000063005)	Crct1 (ENSRNOG00000009574)	Lce1m (ENSRNOG00000009581)	ENSRNOG00000065518	Crnn (ENSRNOG00000008721)	ENSRNOG00000064129	ENSRNOG00000069536	ENSRNOG00000064486	Rptn (ENSRNOG00000018679)	Tchh (ENSRNOG00000069082)	Tchh (ENSRNOG00000056746)	Tchhl1 (ENSRNOG00000009610)	ENSRNOG00000065314	S100a11 (ENSRNOG00000010105)	S100a10 (ENSRNOG00000023226) #22	Tdpoz1-ps4 (ENSRNOG00000066364)	RGD1566337 (ENSRNOG00000063844)	LOC100911679 (ENSRNOG00000063988)	RGD1564313 (ENSRNOG00000064397)	Tdpoz2l1 (ENSRNOG00000062928)	AABR07012426.1 (ENSRNOG00000050263)	LOC120100595 (ENSRNOG00000065808)	Tdpoz1-ps13 (ENSRNOG00000063069)	Tdpoz1-ps14 (ENSRNOG00000063985)	LOC120101040 (ENSRNOG00000070497)	LOC120101042 (ENSRNOG00000064402)	LOC120101043 (ENSRNOG00000068421)	Tdpoz1-ps9 (ENSRNOG00000069915)	Tdpoz2 (ENSRNOG00000065162)	LOC102553503 (ENSRNOG00000064598)
Upper Galilee mountains blind mole rat	MODERN SPECIES	593														ENSNGAG00000015477	S100a11 (ENSNGAG00000016757)	S100a10 (ENSNGAG00000011461) #22	Them4 (ENSNGAG00000012370) #23	Them5 (ENSNGAG00000013042) #24	C2cd4d (ENSNGAG00000013377)	Rorc (ENSNGAG00000016436) #25	Lingo4 (ENSNGAG00000016843) #26	Tdrkh (ENSNGAG00000017825) #27	Oaz3 (ENSNGAG00000019961) #28	Mrpl9 (ENSNGAG00000010578)	Riiad1 (ENSNGAG00000017842) #29	Celf3 (ENSNGAG00000021612) #30	Snx27 (ENSNGAG00000013411) #31	Tuft1 (ENSNGAG00000016432) #32	ENSNGAG00000012043 #33	Pogz (ENSNGAG00000006487) #34	Psmb4 (ENSNGAG00000014782) #35
Lesser Egyptian jerboa	MODERN SPECIES	141	Pglyrp4 (ENSJJAG00000009619)	Pglyrp3 (ENSJJAG00000019546) #7	ENSJJAG00000005907	ENSJJAG00000009222	ENSJJAG00000005176 #11	ENSJJAG00000007620	ENSJJAG00000022880	ENSJJAG00000014882	Kprp (ENSJJAG00000004578) #15	2310050C09Rik (ENSJJAG00000016312) #16	ENSJJAG00000010637	ENSJJAG00000023669	ENSJJAG00000003622	ENSJJAG00000017745	S100a11 (ENSJJAG00000016706)	S100a10 (ENSJJAG00000015567) #22	Them4 (ENSJJAG00000010836) #23	Rorc (ENSJJAG00000009867) #25	Lingo4 (ENSJJAG00000017052) #26	Tdrkh (ENSJJAG00000000323) #27	Oaz3 (ENSJJAG00000006341) #28	Mrpl9 (ENSJJAG00000018784)	Riiad1 (ENSJJAG00000021268) #29	Celf3 (ENSJJAG00000020104) #30	Snx27 (ENSJJAG00000023845) #31	Tuft1 (ENSJJAG00000011616) #32	ENSJJAG00000003080	Pogz (ENSJJAG00000009420) #34	Psmb4 (ENSJJAG00000012721) #35	ENSJJAG00000006656 #36	ENSJJAG00000023680 #37
Kangaroo rat	DUPLICATION
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	345	ENSDORG00000028790	ENSDORG00000027976	ENSDORG00000026601	ENSDORG00000029886 #9	ENSDORG00000029857 #9	ENSDORG00000024714	ENSDORG00000025777	ENSDORG00000011451 #17	Kprp (ENSDORG00000026948) #15	ENSDORG00000023568	ENSDORG00000026274	ENSDORG00000003644 #19	ENSDORG00000025569 #17	Crnn (ENSDORG00000002349)	S100a11 (ENSDORG00000027002)	ENSDORG00000026060 #22	Them4 (ENSDORG00000015331) #23	Them5 (ENSDORG00000015328) #24	Rorc (ENSDORG00000015326) #25	Lingo4 (ENSDORG00000027587) #26	Tdrkh (ENSDORG00000015322) #27	Oaz3 (ENSDORG00000015321) #28	Mrpl9 (ENSDORG00000015320)	Celf3 (ENSDORG00000002488) #30	Snx27 (ENSDORG00000014172) #31	Tuft1 (ENSDORG00000026884) #32	ENSDORG00000007338 #33	Pogz (ENSDORG00000025298) #34	Psmb4 (ENSDORG00000028831) #35	ENSDORG00000015968 #36	ENSDORG00000015967 #37
Kangaroo rat	MODERN SPECIES	337	Pla2g15 (ENSDORG00000010904)	Esrp2 (ENSDORG00000000665)	Nfatc3 (ENSDORG00000029167)	Dus2 (ENSDORG00000001654)	Ddx28 (ENSDORG00000028868)	Slc12a4 (ENSDORG00000002837)	Lcat (ENSDORG00000002836)	Psmb10 (ENSDORG00000002832)	Ctrl (ENSDORG00000025188)	Pskh1 (ENSDORG00000010706)	Nrn1l (ENSDORG00000010704)	Edc4 (ENSDORG00000010702)	ENSDORG00000027828	Thap11 (ENSDORG00000010701)	Ranbp10 (ENSDORG00000010698)	ENSDORG00000026702 #22	Gfod2 (ENSDORG00000000117)	Enkd1 (ENSDORG00000000115)	Pard6a (ENSDORG00000000114)	Carmil2 (ENSDORG00000000112)	Ctcf (ENSDORG00000000111)	Ripor1 (ENSDORG00000014643)	Agrp (ENSDORG00000013972)	Atp6v0d1 (ENSDORG00000013966)	Hsd11b2 (ENSDORG00000013965)	Zdhhc1 (ENSDORG00000003276)	Tppp3 (ENSDORG00000005871)	Lrrc36 (ENSDORG00000005869)	Kctd19 (ENSDORG00000005868)	ENSDORG00000005865	Slc9a5 (ENSDORG00000005859)
Kangaroo rat	MODERN SPECIES	339	ENSDORG00000027569	Pum2 (ENSDORG00000011453)	Sdc1 (ENSDORG00000014605)	Laptm4a (ENSDORG00000014089)	Matn3 (ENSDORG00000014087)	Wdr35 (ENSDORG00000014086)	Ttc32 (ENSDORG00000029568)	Osr1 (ENSDORG00000000798)	Nt5c1b (ENSDORG00000012516)	Rdh14 (ENSDORG00000019712)	Kcns3 (ENSDORG00000024097)	Msgn1 (ENSDORG00000003509)	Gen1 (ENSDORG00000010754)	Smc6 (ENSDORG00000010753)	Vsnl1 (ENSDORG00000024043)	ENSDORG00000026713 #22	Cyria (ENSDORG00000010274)	Mycn (ENSDORG00000009906)	Ddx1 (ENSDORG00000012847)	Nbas (ENSDORG00000012843)	Lratd1 (ENSDORG00000023584)	Trib2 (ENSDORG00000030161)	Lpin1 (ENSDORG00000010485)	Greb1 (ENSDORG00000009946)	E2f6 (ENSDORG00000013213)	Rock2 (ENSDORG00000008054)	Pqlc3 (ENSDORG00000025612)	ENSDORG00000027660	Kcnf1 (ENSDORG00000026132)	Pdia6 (ENSDORG00000003594)	Atp6v1c2 (ENSDORG00000003593)
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00940000162189	ENSGT00940000161606	ENSGT00940000164092	ENSGT00940000163019.b #10	ENSGT00940000165746 #11	ENSGT00940000164168	ENSGT00950000183278	ENSGT00950000183301	ENSGT00940000163498 #20	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000170498	ENSGT00940000154467.b.a	ENSGT00940000163983	ENSGT00940000162966	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35	ENSGT00390000014244 #36
Rabbit	MODERN SPECIES	4	ENSOCUG00000026830 #10	ENSOCUG00000033134 #11	ENSOCUG00000025593	ENSOCUG00000032235	ENSOCUG00000031729	ENSOCUG00000033213	C1orf68 (ENSOCUG00000015200) #16	ENSOCUG00000032926	ENSOCUG00000008547 #20	CRNN (ENSOCUG00000011842)	ENSOCUG00000011836	ENSOCUG00000037250	ENSOCUG00000033132	ENSOCUG00000005205	TCHHL1 (ENSOCUG00000004732)	ENSOCUG00000005198 #22	ENSOCUG00000005194 #23	THEM5 (ENSOCUG00000009679) #24	RORC (ENSOCUG00000022907) #25	LINGO4 (ENSOCUG00000001389) #26	ENSOCUG00000001387 #27	OAZ3 (ENSOCUG00000001385) #28	ENSOCUG00000001383	RIIAD1 (ENSOCUG00000021414) #29	CELF3 (ENSOCUG00000003551) #30	SNX27 (ENSOCUG00000007428) #31	TUFT1 (ENSOCUG00000012659) #32	CGN (ENSOCUG00000012640) #33	POGZ (ENSOCUG00000004849) #34	PSMB4 (ENSOCUG00000015257) #35	SELENBP1 (ENSOCUG00000003371) #36
Tree shrew	MODERN SPECIES	4986													ENSTBEG00000016491	ENSTBEG00000016356	ENSTBEG00000016141	S100A10 (ENSTBEG00000016106) #22
Primates	ANCESTRAL SPECIES	7	ENSGT00940000161842.b #13	ENSGT00730000111580 #16	ENSGT00940000163498 #20	ENSGT00940000165404	ENSGT00940000163905 #19	ENSGT00730000113097	ENSGT00940000161842.a #17	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000163983	ENSGT00940000162966	ENSGT00940000154172	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Strepsirrhini	ANCESTRAL SPECIES																	ENSGT00940000154197.b.b #22
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	354																ENSOGAG00000027255 #22	PBDC1 (ENSOGAG00000015205)	ENSOGAG00000030758	ZDHHC15 (ENSOGAG00000016919)	UPRT (ENSOGAG00000016773)	ABCB7 (ENSOGAG00000032555)	NEXMIF (ENSOGAG00000004432)	ENSOGAG00000033284	RLIM (ENSOGAG00000004431)	SLC16A2 (ENSOGAG00000004429)	ENSOGAG00000032021
Bushbaby	MODERN SPECIES	117	VILL (ENSOGAG00000008057)	CTDSPL (ENSOGAG00000004624)	ENSOGAG00000034113	ITGA9 (ENSOGAG00000004436)	GOLGA4 (ENSOGAG00000027706)	ENSOGAG00000029650	LRRFIP2 (ENSOGAG00000008423)	MLH1 (ENSOGAG00000008416)	EPM2AIP1 (ENSOGAG00000032395)	TRANK1 (ENSOGAG00000026991)	DCLK3 (ENSOGAG00000028781)	STAC (ENSOGAG00000007133)	ARPP21 (ENSOGAG00000009701)	PDCD6IP (ENSOGAG00000006048)	CLASP2 (ENSOGAG00000006037)	ENSOGAG00000006046 #22	UBP1 (ENSOGAG00000000962)	FBXL2 (ENSOGAG00000000961)	SUSD5 (ENSOGAG00000008438)	CRTAP (ENSOGAG00000024678)	TMPPE (ENSOGAG00000008436)	GLB1 (ENSOGAG00000008431)	CCR4 (ENSOGAG00000008430)	TRIM71 (ENSOGAG00000015458)	CNOT10 (ENSOGAG00000007295)	DYNC1LI1 (ENSOGAG00000016162)	ENSOGAG00000026982	ENSOGAG00000028641	CMTM7 (ENSOGAG00000005726)	CMTM8 (ENSOGAG00000013250)	ENSOGAG00000025400
Haplorrhini	ANCESTRAL SPECIES	7	ENSGT01090000263307	ENSGT00940000161842.b #13	ENSGT00940000163498 #20	ENSGT00940000165404	ENSGT00940000163905 #19	ENSGT00730000113097	ENSGT00940000161842.a #17	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000163983	ENSGT00940000162966	ENSGT00940000154172	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Tarsier	MODERN SPECIES	5033														ENSTSYG00000037318	ENSTSYG00000025570	S100A10 (ENSTSYG00000030364) #22	THEM4 (ENSTSYG00000005739) #23	THEM5 (ENSTSYG00000004917) #24	RORC (ENSTSYG00000010455) #25	LINGO4 (ENSTSYG00000036443) #26	TDRKH (ENSTSYG00000010405) #27	OAZ3 (ENSTSYG00000006300) #28	MRPL9 (ENSTSYG00000006296)	RIIAD1 (ENSTSYG00000025851) #29
Simiiformes	ANCESTRAL SPECIES	8	ENSGT00940000161842.b #13	ENSGT00940000163498.a #20	ENSGT00940000165404	ENSGT00940000163498.b #20	ENSGT00940000163905 #19	ENSGT00730000113097	ENSGT00940000161842.a #17	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000163983	ENSGT00940000162966	ENSGT00940000154172.gb.b.a	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Platyrrhini	ANCESTRAL SPECIES	12	ENSGT00950000183312	ENSGT00950000183278	ENSGT00950000183301	ENSGT00730000111554 #15	ENSGT00730000111580 #16	ENSGT00940000161842.b #13	ENSGT00940000161842.a #17	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.a	ENSGT00940000163983	ENSGT00940000162966	ENSGT00940000154172.gb.b.a.b	ENSGT00940000154172.gb.a	ENSGT00940000154197.a.a ##22	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000154489.B	ENSGT00940000160649 #34	ENSGT00390000000698 #35	ENSGT00390000014244 #36
Cebidae	ANCESTRAL SPECIES	12	ENSGT00940000164168	ENSGT00950000183312	ENSGT00950000183278	ENSGT00950000183301	ENSGT00730000111554 #15	ENSGT00730000111580 #16	ENSGT00940000161842.b #13	ENSGT00940000161842.a #17	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000163983	ENSGT00940000162966	ENSGT00940000154172.gb.b.a.b	ENSGT00940000154172.gb.a	ENSGT00940000154197.a.a ##22	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000154489.B	ENSGT00940000160649 #34	ENSGT00390000000698 #35	ENSGT00390000014244 #36
Marmoset	MODERN SPECIES	9	TCHHL1 (ENSCJAG00000006396)	ENSCJAG00000055685	CRCT1 (ENSCJAG00000048030)	ENSCJAG00000038526 #16	ENSCJAG00000069309	ENSCJAG00000069815	ENSCJAG00000079985 #19	ENSCJAG00000082018 #19	ENSCJAG00000044588 #19	ENSCJAG00000039629 #20	ENSCJAG00000077758 #13	ENSCJAG00000086813 #13	ENSCJAG00000076233 #13	ENSCJAG00000063584 #16	ENSCJAG00000021128 #15	S100A10 (ENSCJAG00000047979) #22	THEM4 (ENSCJAG00000007646) #23	THEM5 (ENSCJAG00000042485) #24	RORC (ENSCJAG00000042586) #25	TDRKH (ENSCJAG00000007955) #27	OAZ3 (ENSCJAG00000007939) #28	MRPL9 (ENSCJAG00000007926)	RIIAD1 (ENSCJAG00000037171) #29	CELF3 (ENSCJAG00000007857) #30	SNX27 (ENSCJAG00000007791) #31	TUFT1 (ENSCJAG00000007748) #32	ENSCJAG00000007659 #33	ENSCJAG00000072484	POGZ (ENSCJAG00000007565) #34	PSMB4 (ENSCJAG00000074292) #35	SELENBP1 (ENSCJAG00000007509) #36
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00940000154197.b.b #22
Capuchin	MODERN SPECIES	6	SLC22A1 (ENSCCAG00000030320)	IGF2R (ENSCCAG00000010739)	MAS1 (ENSCCAG00000012059)	PNLDC1 (ENSCCAG00000026232)	MRPL18 (ENSCCAG00000027672)	TCP1 (ENSCCAG00000028316)	ACAT2 (ENSCCAG00000034076)	WTAP (ENSCCAG00000021303)	SOD2 (ENSCCAG00000025254)	FNDC1 (ENSCCAG00000021952)	TAGAP (ENSCCAG00000036010)	RSPH3 (ENSCCAG00000035584)	ENSCCAG00000029457	EZR (ENSCCAG00000029069)	SYTL3 (ENSCCAG00000034836)	ENSCCAG00000007021 #22	DYNLT1 (ENSCCAG00000035503)	TMEM181 (ENSCCAG00000022105)	ENSCCAG00000013481	TULP4 (ENSCCAG00000028211)	ENSCCAG00000031330	GTF2H5 (ENSCCAG00000030667)	SERAC1 (ENSCCAG00000029699)	SYNJ2 (ENSCCAG00000025484)	SNX9 (ENSCCAG00000019868)	ZDHHC14 (ENSCCAG00000036394)	TMEM242 (ENSCCAG00000032700)	ENSCCAG00000025706	ARID1B (ENSCCAG00000027348)	NOX3 (ENSCCAG00000030330)	TFB1M (ENSCCAG00000015250)
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	156													ENSSBOG00000027899	TAFA4 (ENSSBOG00000027474)	EOGT (ENSSBOG00000025714)	ENSSBOG00000036317 #22	TMF1 (ENSSBOG00000024217)	ENSSBOG00000028598	ARL6IP5 (ENSSBOG00000033916)	LMOD3 (ENSSBOG00000031092)	FRMD4B (ENSSBOG00000029694)	MITF (ENSSBOG00000023784)	MDFIC2 (ENSSBOG00000022036)	FOXP1 (ENSSBOG00000027035)	EIF4E3 (ENSSBOG00000020647)	PROK2 (ENSSBOG00000029837)	RYBP (ENSSBOG00000024112)	SHQ1 (ENSSBOG00000021038)	ENSSBOG00000030665	GXYLT2 (ENSSBOG00000021809)	ENSSBOG00000030623
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	45	PEX11A (ENSSBOG00000031420)	WDR93 (ENSSBOG00000027681)	MESP1 (ENSSBOG00000000188)	MESP2 (ENSSBOG00000033873)	ANPEP (ENSSBOG00000024297)	ARPIN (ENSSBOG00000018686)	ENSSBOG00000035698	ZNF710 (ENSSBOG00000031952)	IDH2 (ENSSBOG00000021665)	SEMA4B (ENSSBOG00000028869)	CIB1 (ENSSBOG00000008160)	TTLL13 (ENSSBOG00000030893)	NGRN (ENSSBOG00000029844)	VPS33B (ENSSBOG00000015264)	RCCD1 (ENSSBOG00000030496)	ENSSBOG00000011485 #22	UNC45A (ENSSBOG00000030766)	HDDC3 (ENSSBOG00000035028)	ENSSBOG00000017661	MAN2A2 (ENSSBOG00000024100)	FES (ENSSBOG00000030210)	FURIN (ENSSBOG00000025759)	ENSSBOG00000019473	BLM (ENSSBOG00000030957)	CRTC3 (ENSSBOG00000012255)	IQGAP1 (ENSSBOG00000023549)	ENSSBOG00000022409	SV2B (ENSSBOG00000023396)	SLCO3A1 (ENSSBOG00000031641)	ST8SIA2 (ENSSBOG00000023341)	ENSSBOG00000000134
Bolivian squirrel monkey	MODERN SPECIES	159										CAAP1 (ENSSBOG00000023545)	PLAA (ENSSBOG00000032322)	IFT74 (ENSSBOG00000026591)	LRRC19 (ENSSBOG00000022112)	TEK (ENSSBOG00000025527)	ENSSBOG00000029262	ENSSBOG00000016954 #22	EQTN (ENSSBOG00000023038)	MOB3B (ENSSBOG00000032815)	ENSSBOG00000025861	C9orf72 (ENSSBOG00000020619)	LINGO2 (ENSSBOG00000036332)	ENSSBOG00000023911	ENSSBOG00000024405	ENSSBOG00000024689	ACO1 (ENSSBOG00000026008)	RIGI (ENSSBOG00000030627)	TOPORS (ENSSBOG00000003396)	ENSSBOG00000020460	NDUFB6 (ENSSBOG00000021167)	TMEM215 (ENSSBOG00000036309)	APTX (ENSSBOG00000025215)
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	1144															KCNN2 (ENSANAG00000024841)	ENSANAG00000024117 #22	ENSANAG00000021093	YTHDC2 (ENSANAG00000022177)	MCC (ENSANAG00000025665)	DCP2 (ENSANAG00000028729)	ENSANAG00000020898	REEP5 (ENSANAG00000031617)	SRP19 (ENSANAG00000032576)	APC (ENSANAG00000021032)	ENSANAG00000007660	ENSANAG00000031515	EPB41L4A (ENSANAG00000027415)
Mas night monkey	MODERN SPECIES	784				RPTN (ENSANAG00000038262)	ENSANAG00000032085	TCHHL1 (ENSANAG00000031283)	ENSANAG00000030118	ENSANAG00000037832	ENSANAG00000027772	LCE1A (ENSANAG00000028061)	ENSANAG00000025630	SPRR3 (ENSANAG00000036666)	ENSANAG00000020214	C1orf68 (ENSANAG00000030607) #16	ENSANAG00000029129	ENSANAG00000027666 #22	THEM4 (ENSANAG00000023948) #23	THEM5 (ENSANAG00000016558) #24	RORC (ENSANAG00000029747) #25	LINGO4 (ENSANAG00000006067) #26	TDRKH (ENSANAG00000021663) #27	OAZ3 (ENSANAG00000023949) #28	MRPL9 (ENSANAG00000022559)	RIIAD1 (ENSANAG00000019415) #29	CELF3 (ENSANAG00000030590) #30	SNX27 (ENSANAG00000034302) #31	TUFT1 (ENSANAG00000033115) #32	CGN (ENSANAG00000028207)	POGZ (ENSANAG00000028936) #34	PSMB4 (ENSANAG00000034196) #35	SELENBP1 (ENSANAG00000035868) #36
Mas night monkey	MODERN SPECIES	984	ENSANAG00000020863	TRBV7-9 (ENSANAG00000038442)	ENSANAG00000019721	TRBV16 (ENSANAG00000006214)	ENSANAG00000006270	TRBV24-1 (ENSANAG00000005245)	TRBV27 (ENSANAG00000005926)	ENSANAG00000036006	ENSANAG00000020140	ENSANAG00000020186	EPHB6 (ENSANAG00000030703)	TRPV6 (ENSANAG00000026042)	TRPV5 (ENSANAG00000024458)	LLCFC1 (ENSANAG00000019596)	KEL (ENSANAG00000022139)	ENSANAG00000014191 #22	OR9A2 (ENSANAG00000029981)	PIP (ENSANAG00000020695)	GSTK1 (ENSANAG00000038133)	TMEM139 (ENSANAG00000017815)	CASP2 (ENSANAG00000022973)	CLCN1 (ENSANAG00000024604)	FAM131B (ENSANAG00000014095)	ENSANAG00000025526	EPHA1 (ENSANAG00000036617)	ENSANAG00000019805	ENSANAG00000034570	TCAF1 (ENSANAG00000034724)	ENSANAG00000036265	OR2A2 (ENSANAG00000034657)	ARHGEF5 (ENSANAG00000022132)
Mas night monkey	MODERN SPECIES	1045									SPG21 (ENSANAG00000024557)	ANKDD1A (ENSANAG00000024207)	PLEKHO2 (ENSANAG00000032112)	PIF1 (ENSANAG00000026396)	RBPMS2 (ENSANAG00000014652)	OAZ2 (ENSANAG00000032482)	ZNF609 (ENSANAG00000036036)	ENSANAG00000020189 #22	TRIP4 (ENSANAG00000027612)	PCLAF (ENSANAG00000032895)	ENSANAG00000020004	CSNK1G1 (ENSANAG00000034685)	ENSANAG00000038250	PPIB (ENSANAG00000038282)	SNX22 (ENSANAG00000031598)	SNX1 (ENSANAG00000028586)	CIAO2A (ENSANAG00000030216)	DAPK2 (ENSANAG00000025796)	HERC1 (ENSANAG00000034456)	FBXL22 (ENSANAG00000018462)	ENSANAG00000019672	USP3 (ENSANAG00000038125)	CA12 (ENSANAG00000031578)
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00940000161842.b.d #13	ENSGT00940000163498.a #20	ENSGT00940000165404	ENSGT00940000163498.b #20	ENSGT00940000163905 #19	ENSGT00730000113097	ENSGT00940000161842.a #17	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000163983	ENSGT00940000162966	ENSGT00940000154172.gb.b.a	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00940000165404	ENSGT00940000163498.b #20	ENSGT00940000163905 #19	ENSGT00730000113097	ENSGT00940000161842.a #17	ENSGT00940000162465	ENSGT00940000164915	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000164620	ENSGT00940000163983	ENSGT00940000162966	ENSGT00940000154172.gb.b.a	ENSGT00940000154197.b.b #22	ENSGT00940000160047.s #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Gibbon	MODERN SPECIES	158																S100A10 (ENSNLEG00000013123) #22
Hominidae	ANCESTRAL SPECIES	6	ENSGT00940000165404	ENSGT00940000163498.b #20	ENSGT00940000163905 #19	ENSGT00730000113097	ENSGT00940000161842.a #17	ENSGT00940000162465	ENSGT00940000164915	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000164620	ENSGT00940000163983.b	ENSGT00940000162966	ENSGT00940000154172.gb.b.a	ENSGT00940000154197.b.b #22	ENSGT00940000160047.s #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Orangutan	MODERN SPECIES		LCE2B (ENSPPYG00000038561) #13	LCE3A (ENSPPYG00000000838) #20	LCE3B (ENSPPYG00000039034)	LCE3C (ENSPPYG00000000839) #20	ENSPPYG00000034690 #19	ENSPPYG00000037350 #19	CRCT1 (ENSPPYG00000000842)	LCE5A (ENSPPYG00000000843) #17	CRNN (ENSPPYG00000000844)	ENSPPYG00000000845	ENSPPYG00000040029	ENSPPYG00000000847	ENSPPYG00000032510	TCHHL1 (ENSPPYG00000034079)	ENSPPYG00000000848	ENSPPYG00000000850 #22	THEM4 (ENSPPYG00000000851) #23	THEM5 (ENSPPYG00000000852) #24	C2CD4D (ENSPPYG00000029725)	RORC (ENSPPYG00000000853) #25	LINGO4 (ENSPPYG00000000854) #26	TDRKH (ENSPPYG00000000855) #27	OAZ3 (ENSPPYG00000000856) #28	MRPL9 (ENSPPYG00000000857)	ENSPPYG00000000858 #29	CELF3 (ENSPPYG00000000859) #30	SNX27 (ENSPPYG00000000860) #31	TUFT1 (ENSPPYG00000000861) #32	ENSPPYG00000000862 #33	POGZ (ENSPPYG00000000864) #34	PSMB4 (ENSPPYG00000000865) #35
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00940000163905 #19	ENSGT00730000113097	ENSGT00940000161842.a #17	ENSGT00940000162465	ENSGT00940000164915	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00390000014753.l.b	ENSGT00910000147236.b	ENSGT00940000164620	ENSGT00940000163983.b	ENSGT00940000162966	ENSGT00940000154172.gb.b.a	ENSGT00940000154197.b.b #22	ENSGT00940000160047.s #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Gorilla	MODERN SPECIES		LCE2C (ENSGGOG00000041860) #13	LCE2D (ENSGGOG00000039821) #13	LCE3B (ENSGGOG00000002199)	ENSGGOG00000023986 #19	LCE5A (ENSGGOG00000025178) #17	CRNN (ENSGGOG00000023574)	ENSGGOG00000024846	ENSGGOG00000008451	ENSGGOG00000001834	ENSGGOG00000004511	ENSGGOG00000036337	ENSGGOG00000043419	ENSGGOG00000027117	TCHHL1 (ENSGGOG00000012074)	S100A11 (ENSGGOG00000008680)	ENSGGOG00000025421 #22	THEM4 (ENSGGOG00000008114) #23	THEM5 (ENSGGOG00000002230) #24	C2CD4D (ENSGGOG00000028484)	RORC (ENSGGOG00000002223) #25	LINGO4 (ENSGGOG00000004487) #26	TDRKH (ENSGGOG00000025419) #27	OAZ3 (ENSGGOG00000001904) #28	MRPL9 (ENSGGOG00000001902)	ENSGGOG00000003583 #29	CELF3 (ENSGGOG00000021973) #30	ENSGGOG00000023049 #30	SNX27 (ENSGGOG00000034898) #31	ENSGGOG00000026173	TUFT1 (ENSGGOG00000007971) #32	ENSGGOG00000007953 #33
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00940000163498.b #20	ENSGT00940000163905.q #19	ENSGT00940000163905.r #19	ENSGT00730000113097	ENSGT00940000161842.a #17	ENSGT00940000162465	ENSGT00940000164915	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000164620	ENSGT00940000163983.b	ENSGT00940000162966	ENSGT00940000154172.gb.b.a	ENSGT00940000154197.b.b #22	ENSGT00940000160047.s #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Pan	ANCESTRAL SPECIES		ENSGT00940000163905.q #19	ENSGT00940000163905.r #19	ENSGT00730000113097	ENSGT00940000161842.a #17	ENSGT00940000162465	ENSGT00940000164915	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00390000014753.l.b	ENSGT00910000147236.b	ENSGT00940000163983.b	ENSGT00940000162966	ENSGT00940000154172.gb.b.a	ENSGT00940000154197.b.b #22	ENSGT00940000160047.s #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Chimpanzee	MODERN SPECIES		LCE3D (ENSPTRG00000043930) #19	LCE3E (ENSPTRG00000049653) #19	CRCT1 (ENSPTRG00000001316)	LCE5A (ENSPTRG00000001315) #17	CRNN (ENSPTRG00000001314)	ENSPTRG00000052403	FLG2 (ENSPTRG00000001313)	FLG (ENSPTRG00000001312)	HRNR (ENSPTRG00000044100)	RPTN (ENSPTRG00000033880)	ENSPTRG00000052139	ENSPTRG00000049010	ENSPTRG00000046417	TCHHL1 (ENSPTRG00000001305)	S100A11 (ENSPTRG00000001303)	S100A10 (ENSPTRG00000001302) #22	THEM4 (ENSPTRG00000001301) #23	THEM5 (ENSPTRG00000001300) #24	C2CD4D (ENSPTRG00000041010)	RORC (ENSPTRG00000032436) #25	LINGO4 (ENSPTRG00000001298) #26	TDRKH (ENSPTRG00000001297) #27	OAZ3 (ENSPTRG00000001296) #28	MRPL9 (ENSPTRG00000001295)	RIIAD1 (ENSPTRG00000001294) #29	CELF3 (ENSPTRG00000001293) #30	SNX27 (ENSPTRG00000001292) #31	TUFT1 (ENSPTRG00000001291) #32	CGN (ENSPTRG00000022663) #33	POGZ (ENSPTRG00000001289) #34	PSMB4 (ENSPTRG00000001288) #35
Bonobo	MODERN SPECIES		LCE3A (ENSPPAG00000014043) #20	LCE3B (ENSPPAG00000023046)	LCE3C (ENSPPAG00000013471) #20	LCE3D (ENSPPAG00000019158) #19	LCE3E (ENSPPAG00000024570) #19	CRCT1 (ENSPPAG00000010532)	LCE5A (ENSPPAG00000036794) #17	ENSPPAG00000014413	ENSPPAG00000041801	ENSPPAG00000038158	ENSPPAG00000034752	ENSPPAG00000042806	TCHHL1 (ENSPPAG00000042692)	ENSPPAG00000039848	S100A11 (ENSPPAG00000030540)	S100A10 (ENSPPAG00000037637) #22	THEM4 (ENSPPAG00000035727) #23	THEM5 (ENSPPAG00000030756) #24	RORC (ENSPPAG00000027120) #25	LINGO4 (ENSPPAG00000017350) #26	TDRKH (ENSPPAG00000028994) #27	OAZ3 (ENSPPAG00000013394) #28	MRPL9 (ENSPPAG00000016172)	ENSPPAG00000028387 #29	CELF3 (ENSPPAG00000038551) #30	SNX27 (ENSPPAG00000043259) #31	TUFT1 (ENSPPAG00000038447) #32	ENSPPAG00000041669 #33	POGZ (ENSPPAG00000029740) #34	PSMB4 (ENSPPAG00000029520) #35	SELENBP1 (ENSPPAG00000043100) #36
Human	MODERN SPECIES		LCE3A (ENSG00000185962) #20	LCE3B (ENSG00000187238)	LCE3C (ENSG00000244057) #20	LCE3D (ENSG00000163202) #19	LCE3E (ENSG00000185966) #19	CRCT1 (ENSG00000169509)	LCE5A (ENSG00000186207) #17	CRNN (ENSG00000143536)	FLG2 (ENSG00000143520)	FLG (ENSG00000143631)	HRNR (ENSG00000197915)	RPTN (ENSG00000215853)	TCHH (ENSG00000159450)	TCHHL1 (ENSG00000182898)	S100A11 (ENSG00000163191)	S100A10 (ENSG00000197747) #22	THEM4 (ENSG00000159445) #23	THEM5 (ENSG00000196407) #24	C2CD4D (ENSG00000225556)	RORC (ENSG00000143365) #25	LINGO4 (ENSG00000213171) #26	TDRKH (ENSG00000182134) #27	OAZ3 (ENSG00000143450) #28	MRPL9 (ENSG00000143436)	RIIAD1 (ENSG00000178796) #29	CELF3 (ENSG00000159409) #30	SNX27 (ENSG00000143376) #31	TUFT1 (ENSG00000143367) #32	CGN (ENSG00000143375)	POGZ (ENSG00000143442) #34	PSMB4 (ENSG00000159377) #35
Cercopithecidae	ANCESTRAL SPECIES	22	ENSGT00940000163498.a #20	ENSGT00940000165404	ENSGT00940000163498.b #20	ENSGT00940000163905 #19	ENSGT00730000113097	ENSGT00940000161842.a #17	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000163983	ENSGT00940000162966	ENSGT00940000154172.gb.b.a.c	ENSGT00420000029746.e.a.b.a.a.a.a.b.b.b.a	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Rhinopithecus	ANCESTRAL SPECIES	23										ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000163983	ENSGT00940000162966	ENSGT00940000154172.gb.b.a.c	ENSGT00420000029746.e.a.b.a.a.a.a.b.b.b.a	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35	ENSGT00390000014244 #36
Black snub-nosed monkey	DUPLICATION
Black snub-nosed monkey	MODERN SPECIES	590											RPTN (ENSRBIG00000030933)	ENSRBIG00000033037	TCHHL1 (ENSRBIG00000043220)	ENSRBIG00000041931	ENSRBIG00000034058	ENSRBIG00000036151 #22	THEM4 (ENSRBIG00000031977) #23	THEM5 (ENSRBIG00000028002) #24	RORC (ENSRBIG00000031354) #25	LINGO4 (ENSRBIG00000026745) #26	TDRKH (ENSRBIG00000044860) #27	OAZ3 (ENSRBIG00000032011) #28	MRPL9 (ENSRBIG00000036937)	RIIAD1 (ENSRBIG00000036425) #29	CELF3 (ENSRBIG00000043205) #30	SNX27 (ENSRBIG00000043969) #31	TUFT1 (ENSRBIG00000022910) #32	ENSRBIG00000017870 #33	POGZ (ENSRBIG00000044811) #34	PSMB4 (ENSRBIG00000041329) #35	SELENBP1 (ENSRBIG00000025453) #36
Black snub-nosed monkey	MODERN SPECIES	1727									USP38 (ENSRBIG00000034798)	GAB1 (ENSRBIG00000039258)	SMARCA5 (ENSRBIG00000044644)	FREM3 (ENSRBIG00000043128)	ENSRBIG00000035543	ENSRBIG00000013183	ENSRBIG00000036198	ENSRBIG00000013900 #22
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	2622														ENSRROG00000036104	ENSRROG00000031960	ENSRROG00000041423 #22	THEM4 (ENSRROG00000028759) #23	THEM5 (ENSRROG00000042268) #24	RORC (ENSRROG00000040819) #25	LINGO4 (ENSRROG00000011588) #26	TDRKH (ENSRROG00000036923) #27	OAZ3 (ENSRROG00000038133) #28	MRPL9 (ENSRROG00000031111)	RIIAD1 (ENSRROG00000045557) #29	CELF3 (ENSRROG00000044979) #30	SNX27 (ENSRROG00000032485) #31	TUFT1 (ENSRROG00000040599) #32	ENSRROG00000028411 #33	POGZ (ENSRROG00000032667) #34	PSMB4 (ENSRROG00000029859) #35	SELENBP1 (ENSRROG00000037330) #36
Golden snub-nosed monkey	MODERN SPECIES	2324															CXorf58 (ENSRROG00000029252)	ENSRROG00000025906 #22	APOO (ENSRROG00000028881)	ENSRROG00000034497	SAT1 (ENSRROG00000042719)
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000165404	ENSGT00940000163498.b #20	ENSGT00940000163905.u #19	ENSGT00940000163905.v #19	ENSGT00730000113097	ENSGT00940000161842.a #17	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000163983	ENSGT00940000162966	ENSGT00940000154172.gb.b.a.c.d	ENSGT00420000029746.e.a.b.a.a.a.a.b.b.b.a	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Vervet Monkey	MODERN SPECIES	12	SMCP (ENSCSAG00000000039)	LCE6A (ENSCSAG00000000038)	ENSCSAG00000018408	ENSCSAG00000001840	KPRP (ENSCSAG00000018409) #15	C1orf68 (ENSCSAG00000001839) #16	ENSCSAG00000018410	LCE2A (ENSCSAG00000018411) #13	LCE5A (ENSCSAG00000001838) #17	ENSCSAG00000018412 #19	CRNN (ENSCSAG00000001837)	ENSCSAG00000001834	RPTN (ENSCSAG00000001833)	ENSCSAG00000001832	ENSCSAG00000001831	ENSCSAG00000001830 #22	THEM4 (ENSCSAG00000001829) #23	C2CD4D (ENSCSAG00000018413)	RORC (ENSCSAG00000001825) #25	LINGO4 (ENSCSAG00000000180) #26	TDRKH (ENSCSAG00000001820) #27	ENSCSAG00000001818	MRPL9 (ENSCSAG00000001816)	RIIAD1 (ENSCSAG00000001814) #29	ENSCSAG00000000179	CELF3 (ENSCSAG00000001812) #30	SNX27 (ENSCSAG00000001810) #31	TUFT1 (ENSCSAG00000001806) #32	ENSCSAG00000001804 #33	POGZ (ENSCSAG00000001803) #34	PSMB4 (ENSCSAG00000001802) #35
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000161842.b.d.c #13	ENSGT00940000161842.b.d.d #13	ENSGT00730000113097	ENSGT00940000161842.a #17	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000163983	ENSGT00390000014753.l.b	ENSGT00940000164620	ENSGT00940000162966	ENSGT00940000154172.gb.b.a.c.d	ENSGT00420000029746.e.a.b.a.a.a.a.b.b.b.a	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00940000161842.b.c #13	ENSGT00940000161842.b.d.c #13	ENSGT00940000161842.b.d.d #13	ENSGT00940000163905.v #19	ENSGT00730000113097	ENSGT00940000161842.a #17	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.a	ENSGT00940000163983	ENSGT00390000014753.l.b	ENSGT00940000164620	ENSGT00940000162966	ENSGT00940000154172.gb.b.a.c.d	ENSGT00420000029746.e.a.b.a.a.a.a.b.b.b.a	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000154489.B	ENSGT00940000162698 #33	ENSGT00940000160649 #34
Olive baboon	MODERN SPECIES		ENSPANG00000039755 #13	LCE3A (ENSPANG00000037695) #20	LCE3B (ENSPANG00000048883)	LCE3C (ENSPANG00000043674) #20	ENSPANG00000041574 #19	ENSPANG00000001479	ENSPANG00000039437 #19	CRCT1 (ENSPANG00000011659)	LCE5A (ENSPANG00000018957) #17	CRNN (ENSPANG00000009153)	RPTN (ENSPANG00000030992)	ENSPANG00000043243	TCHHL1 (ENSPANG00000034098)	ENSPANG00000041696	ENSPANG00000007245	S100A10 (ENSPANG00000032390) #22	THEM4 (ENSPANG00000009760) #23	THEM5 (ENSPANG00000033870) #24	C2CD4D (ENSPANG00000002233)	RORC (ENSPANG00000020758) #25	LINGO4 (ENSPANG00000007807) #26	TDRKH (ENSPANG00000001986) #27	OAZ3 (ENSPANG00000011815) #28	MRPL9 (ENSPANG00000008737)	RIIAD1 (ENSPANG00000015348) #29	CELF3 (ENSPANG00000023526) #30	SNX27 (ENSPANG00000020431) #31	TUFT1 (ENSPANG00000003699) #32	CGN (ENSPANG00000011379)	POGZ (ENSPANG00000017623) #34	PSMB4 (ENSPANG00000023527) #35
Cercopithecinae_d	ANCESTRAL SPECIES	29	ENSGT00950000183312	ENSGT00950000183278	ENSGT00730000111580 #16	ENSGT00940000161842.b.d.d #13	ENSGT00730000113097	ENSGT00940000161842.a #17	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.a	ENSGT00390000014753.l.b	ENSGT00940000164620	ENSGT00940000163983	ENSGT00940000162966	ENSGT00940000154172.gb.b.a.c.d	ENSGT00420000029746.e.a.b.a.a.a.a.b.b.b.a	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000154489.B	ENSGT00940000162698 #33	ENSGT00940000160649 #34
Drill	MODERN SPECIES	411											FLG2 (ENSMLEG00000029025)	ENSMLEG00000036412	TCHHL1 (ENSMLEG00000042735)	ENSMLEG00000030945	ENSMLEG00000036504	S100A10 (ENSMLEG00000010423) #22	THEM4 (ENSMLEG00000041867) #23	THEM5 (ENSMLEG00000037664) #24	RORC (ENSMLEG00000041292) #25	LINGO4 (ENSMLEG00000000178) #26	TDRKH (ENSMLEG00000033882) #27	OAZ3 (ENSMLEG00000035369) #28	MRPL9 (ENSMLEG00000043239)	RIIAD1 (ENSMLEG00000040504) #29	CELF3 (ENSMLEG00000028006) #30	SNX27 (ENSMLEG00000036793) #31	TUFT1 (ENSMLEG00000036430) #32	ENSMLEG00000042702 #33	POGZ (ENSMLEG00000031084) #34	PSMB4 (ENSMLEG00000020724) #35	SELENBP1 (ENSMLEG00000043655) #36
Sooty mangabey	DUPLICATION
Sooty mangabey	MODERN SPECIES	448	GLRA2 (ENSCATG00000036546)	FANCB (ENSCATG00000034857)	MOSPD2 (ENSCATG00000001473)	ASB9 (ENSCATG00000036620)	ASB11 (ENSCATG00000037691)	PIGA (ENSCATG00000040303)	VEGFD (ENSCATG00000034073)	PIR (ENSCATG00000017482)	BMX (ENSCATG00000044540)	ACE2 (ENSCATG00000013606)	CLTRN (ENSCATG00000032908)	CA5B (ENSCATG00000032924)	ZRSR2 (ENSCATG00000034085)	AP1S2 (ENSCATG00000039294)	GRPR (ENSCATG00000035466)	ENSCATG00000015601 #22	S100G (ENSCATG00000035072)	CTPS2 (ENSCATG00000030123)	SYAP1 (ENSCATG00000044882)	TXLNG (ENSCATG00000032410)	RBBP7 (ENSCATG00000042741)	ENSCATG00000037187	REPS2 (ENSCATG00000041359)	NHS (ENSCATG00000033217)	SCML1 (ENSCATG00000006222)	BEND2 (ENSCATG00000036336)	SCML2 (ENSCATG00000038994)	CDKL5 (ENSCATG00000041616)	RS1 (ENSCATG00000029796)	PPEF1 (ENSCATG00000043035)	ENSCATG00000037972
Sooty mangabey	MODERN SPECIES	153	SPRR4 (ENSCATG00000002632)	LCE1A (ENSCATG00000017623)	ENSCATG00000017677	C1orf68 (ENSCATG00000044855) #16	ENSCATG00000017507 #13	CRCT1 (ENSCATG00000016190)	LCE5A (ENSCATG00000017297) #17	CRNN (ENSCATG00000019973)	FLG2 (ENSCATG00000044861)	RPTN (ENSCATG00000033282)	ENSCATG00000008029	TCHH (ENSCATG00000039707)	TCHHL1 (ENSCATG00000039351)	ENSCATG00000033220	ENSCATG00000029227	ENSCATG00000038312 #22	THEM4 (ENSCATG00000032487) #23	THEM5 (ENSCATG00000044867) #24	C2CD4D (ENSCATG00000002143)	RORC (ENSCATG00000034157) #25	LINGO4 (ENSCATG00000021085) #26	TDRKH (ENSCATG00000041878) #27	OAZ3 (ENSCATG00000014157) #28	MRPL9 (ENSCATG00000043909)	RIIAD1 (ENSCATG00000021062) #29	CELF3 (ENSCATG00000030846) #30	SNX27 (ENSCATG00000034009) #31	TUFT1 (ENSCATG00000037719) #32	CGN (ENSCATG00000031118)	POGZ (ENSCATG00000024127) #34	PSMB4 (ENSCATG00000039167) #35
Macaca	ANCESTRAL SPECIES		ENSGT00940000161842.b.d.d.b #13	ENSGT00730000111580 #16	ENSGT00940000161842.b.d.d.a.a #13	ENSGT00730000113097	ENSGT00940000161842.a #17	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000163983	ENSGT00390000014753.l.b	ENSGT00940000164620	ENSGT00940000162966	ENSGT00420000029746.e.a.b.a.a.a.a.b.b.a	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Pig-tailed macaque	MODERN SPECIES	262	C1orf68 (ENSMNEG00000033043) #16	ENSMNEG00000035302 #13	ENSMNEG00000033860 #13	ENSMNEG00000023573 #13	CRCT1 (ENSMNEG00000021397)	LCE5A (ENSMNEG00000027973) #17	CRNN (ENSMNEG00000041303)	FLG2 (ENSMNEG00000042232)	RPTN (ENSMNEG00000031148)	ENSMNEG00000032914	TCHH (ENSMNEG00000033147)	TCHHL1 (ENSMNEG00000030875)	ENSMNEG00000032093	ENSMNEG00000032935	ENSMNEG00000041444	S100A10 (ENSMNEG00000033842) #22	ENSMNEG00000044777 #23	THEM5 (ENSMNEG00000040359) #24	C2CD4D (ENSMNEG00000020684)	RORC (ENSMNEG00000041238) #25	LINGO4 (ENSMNEG00000028221) #26	TDRKH (ENSMNEG00000021524) #27	OAZ3 (ENSMNEG00000043875) #28	MRPL9 (ENSMNEG00000020504)	RIIAD1 (ENSMNEG00000033990) #29	CELF3 (ENSMNEG00000044120) #30	SNX27 (ENSMNEG00000033985) #31	TUFT1 (ENSMNEG00000040638) #32	ENSMNEG00000029723 #33	POGZ (ENSMNEG00000038332) #34	PSMB4 (ENSMNEG00000028484) #35
Macaca_a	ANCESTRAL SPECIES		ENSGT00950000183301.h.a.a	ENSGT00730000111554 #15	ENSGT00940000161842.b.d.d.a.b #13	ENSGT00390000000628.w.a.a.b.a	ENSGT00730000113097	ENSGT00940000161842.a #17	ENSGT00940000162465	ENSGT00940000154467.b.b.b	ENSGT00940000154467.b.b.a	ENSGT00940000154467.b.a	ENSGT00940000154467.a	ENSGT00940000163983	ENSGT00940000162966	ENSGT00940000153299.c.b.b.b.c.a	ENSGT00420000029746.e.a.b.a.a.a.a.b.b.a	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #24	ENSGT00940000163537	ENSGT00940000161521 #25	ENSGT00940000162157 #26	ENSGT00940000159364 #27	ENSGT00940000161581 #28	ENSGT00390000008281	ENSGT00390000003062 #29	ENSGT00940000154716 #30	ENSGT00950000183212.C #31	ENSGT00950000183065.B #32	ENSGT00940000162698 #33	ENSGT00940000160649 #34	ENSGT00390000000698 #35
Crab-eating macaque	MODERN SPECIES		ENSMFAG00000058045	KPRP (ENSMFAG00000065755) #15	ENSMFAG00000054616 #13	ENSMFAG00000020533	LCE5A (ENSMFAG00000030064) #17	CRNN (ENSMFAG00000039664)	ENSMFAG00000037107	FLG (ENSMFAG00000052909)	HRNR (ENSMFAG00000047345)	RPTN (ENSMFAG00000054571)	ENSMFAG00000049602	TCHHL1 (ENSMFAG00000065203)	ENSMFAG00000053564	ENSMFAG00000051097	ENSMFAG00000049673	S100A10 (ENSMFAG00000044914) #22	THEM4 (ENSMFAG00000032182) #23	RORC (ENSMFAG00000000807) #25	LINGO4 (ENSMFAG00000029272) #26	TDRKH (ENSMFAG00000041641) #27	OAZ3 (ENSMFAG00000000682) #28	MRPL9 (ENSMFAG00000000874)	RIIAD1 (ENSMFAG00000042291) #29	CELF3 (ENSMFAG00000040182) #30	SNX27 (ENSMFAG00000030490) #31	TUFT1 (ENSMFAG00000034076) #32	ENSMFAG00000003431 #33	POGZ (ENSMFAG00000043596) #34	ENSMFAG00000054881	PSMB4 (ENSMFAG00000033442) #35	SELENBP1 (ENSMFAG00000033465) #36
Rhesus	MODERN SPECIES		KPRP (ENSMMUG00000051816) #15	ENSMMUG00000049843 #13	ENSMMUG00000049286 #13	ENSMMUG00000050804	CRCT1 (ENSMMUG00000058456)	LCE5A (ENSMMUG00000001967) #17	CRNN (ENSMMUG00000009040)	FLG2 (ENSMMUG00000059472)	ENSMMUG00000054850	RPTN (ENSMMUG00000019033)	TCHH (ENSMMUG00000056263)	TCHHL1 (ENSMMUG00000020209)	ENSMMUG00000045342	ENSMMUG00000004441	ENSMMUG00000042487	S100A10 (ENSMMUG00000052533) #22	THEM4 (ENSMMUG00000014361) #24	C2CD4D (ENSMMUG00000014358)	RORC (ENSMMUG00000012138) #25	LINGO4 (ENSMMUG00000012137) #26	TDRKH (ENSMMUG00000009096) #27	OAZ3 (ENSMMUG00000009095) #28	MRPL9 (ENSMMUG00000009094)	RIIAD1 (ENSMMUG00000016955) #29	CELF3 (ENSMMUG00000016952) #30	SNX27 (ENSMMUG00000016920) #31	TUFT1 (ENSMMUG00000021260) #32	CGN (ENSMMUG00000021259) #33	POGZ (ENSMMUG00000020925) #34	PSMB4 (ENSMMUG00000020924) #35	SELENBP1 (ENSMMUG00000045396) #36