Lepidosauria	ANCESTRAL SPECIES	10	ENSGT00940000157667 #8	ENSGT00940000158481 #9	ENSGT00940000159662 #10	ENSGT00940000156620 #11	ENSGT00940000164760 #12	ENSGT00950000183478 #13	ENSGT00390000016821 #14	ENSGT00940000157226 #15	ENSGT00940000154860 #16	ENSGT00390000006196 #17	ENSGT00390000010991 #18	ENSGT00940000157405 #19	ENSGT00390000013149	ENSGT00390000012559 #20	ENSGT00390000008679 #21	ENSGT00940000155426 #22	ENSGT00530000063981.b #23	ENSGT00390000006218 #24	ENSGT00940000160574 #25	ENSGT00440000034605	ENSGT00390000016768 #26	ENSGT00940000154234.a #27	ENSGT00940000155379 #28	ENSGT00530000063822.a.a #29	ENSGT00940000156046 #30	ENSGT00390000001680 #31	ENSGT00940000159310 #32	ENSGT00940000160980 #33	ENSGT00390000018100 #35	ENSGT00940000157661 #36	ENSGT00390000009140 #37
Episquamata	ANCESTRAL SPECIES		ENSGT00390000017249 #7	ENSGT00940000157667 #8	ENSGT00940000158481.g #9	ENSGT00940000159662 #10	ENSGT00940000156620 #11	ENSGT00940000164760 #12	ENSGT00950000183478 #13	ENSGT00390000016821 #14	ENSGT00940000157226 #15	ENSGT00940000154860 #16	ENSGT00390000006196 #17	ENSGT00390000010991 #18	ENSGT00940000157405 #19	ENSGT00390000012559 #20	ENSGT00390000008679 #21	ENSGT00940000155426 #22	ENSGT00530000063981.b #23	ENSGT00390000006218 #24	ENSGT00940000160574 #25	ENSGT00440000034605	ENSGT00390000016768 #26	ENSGT00940000154234.a #27	ENSGT00940000155379 #28	ENSGT00530000063822.a.a #29	ENSGT00940000156046 #30	ENSGT00390000001680 #31	ENSGT00940000159310 #32	ENSGT00940000160980 #33	ENSGT00390000018100 #35	ENSGT00940000157661 #36	ENSGT00390000009140 #37
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00390000017249 #7	ENSGT00940000157667 #8	ENSGT00940000158481.g #9	ENSGT00940000159662 #10	ENSGT00940000156620 #11	ENSGT00940000164760 #12	ENSGT00950000183478 #13	ENSGT00390000016821 #14	ENSGT00940000157226 #15	ENSGT00940000154860 #16	ENSGT00390000006196 #17	ENSGT00390000010991 #18	ENSGT00940000157405 #19	ENSGT00390000012559 #20	ENSGT00390000008679 #21	ENSGT00940000155426 #22	ENSGT00530000063981.b #23	ENSGT00390000006218 #24	ENSGT00940000160574 #25	ENSGT00390000016768 #26	ENSGT00940000154234.a #27	ENSGT00940000155379 #28	ENSGT00530000063822.a.a #29	ENSGT00940000156046 #30	ENSGT00390000001680 #31	ENSGT00940000159310 #32	ENSGT00940000160980 #33	ENSGT00390000018100 #35	ENSGT00940000157661 #36	ENSGT00390000009140 #37	ENSGT00940000153438.a
Elapidae	ANCESTRAL SPECIES	3	ENSGT00390000017249 #7	ENSGT00940000157667 #8	ENSGT00940000158481.g #9	ENSGT00940000159662 #10	ENSGT00940000156620 #11	ENSGT00940000164760 #12	ENSGT00950000183478 #13	ENSGT00390000016821 #14	ENSGT00940000157226 #15	ENSGT00940000154860 #16	ENSGT00390000006196 #17	ENSGT00390000010991 #18	ENSGT00940000157405 #19	ENSGT00390000012559 #20	ENSGT00390000008679 #21	ENSGT00940000155426 #22	ENSGT00530000063981.b #23	ENSGT00390000006218 #24	ENSGT00940000160574 #25	ENSGT00390000016768 #26	ENSGT00940000154234.a #27	ENSGT00940000155379 #28	ENSGT00530000063822.a.a #29	ENSGT00940000156046 #30	ENSGT00390000001680 #31	ENSGT00940000159310 #32	ENSGT00940000160980 #33	ENSGT00390000018100.n #34	ENSGT00390000018100.m #35	ENSGT00940000157661 #36	ENSGT00390000009140 #37
Indian cobra	MODERN SPECIES		TSPAN18 (ENSNNAG00000010573) #8	ENSNNAG00000010552 #9	ALX4 (ENSNNAG00000010499) #10	EXT2 (ENSNNAG00000010463) #11	ENSNNAG00000010452 #12	ENSNNAG00000010340 #12	ENSNNAG00000010425 #13	C11orf96 (ENSNNAG00000010307) #14	ALKBH3 (ENSNNAG00000010286) #15	HSD17B12 (ENSNNAG00000010264) #16	TTC17 (ENSNNAG00000009255) #17	API5 (ENSNNAG00000009155) #18	LRRC4C (ENSNNAG00000009141) #19	RAG2 (ENSNNAG00000009131) #20	RAG1 (ENSNNAG00000009122) #21	TRAF6 (ENSNNAG00000009096) #22	ENSNNAG00000009086	PRR5L (ENSNNAG00000008974) #23	COMMD9 (ENSNNAG00000008937) #24	LDLRAD3 (ENSNNAG00000008866) #25	ENSNNAG00000008809	PAMR1 (ENSNNAG00000008663) #27	SLC1A2 (ENSNNAG00000008116) #28	ENSNNAG00000008038 #29	PDHX (ENSNNAG00000007989) #30	APIP (ENSNNAG00000007952) #31	EHF (ENSNNAG00000007936) #32	ELF5 (ENSNNAG00000007913) #33	ENSNNAG00000007866 #34	ENSNNAG00000007572 #35	ABTB2 (ENSNNAG00000007462) #36
Elapidae_a	ANCESTRAL SPECIES	4	ENSGT00940000159837	ENSGT00390000017249 #7	ENSGT00940000157667 #8	ENSGT00940000158481.g #9	ENSGT00940000159662 #10	ENSGT00940000156620 #11	ENSGT00940000164760 #12	ENSGT00390000016821 #14	ENSGT00940000157226 #15	ENSGT00940000154860 #16	ENSGT00390000006196 #17	ENSGT00390000010991 #18	ENSGT00940000157405 #19	ENSGT00390000012559 #20	ENSGT00390000008679 #21	ENSGT00940000155426 #22	ENSGT00530000063981.b #23	ENSGT00390000006218 #24	ENSGT00940000160574 #25	ENSGT00390000016768 #26	ENSGT00940000154234.a #27	ENSGT00940000155379 #28	ENSGT00530000063822.a.a #29	ENSGT00940000156046 #30	ENSGT00390000001680 #31	ENSGT00940000159310 #32	ENSGT00940000160980 #33	ENSGT00390000018100.n #34	ENSGT00390000018100.m #35	ENSGT00940000157661 #36	ENSGT00390000009140 #37
Acanthophiinae	ANCESTRAL SPECIES	6	ENSGT00390000017249 #7	ENSGT00940000157667 #8	ENSGT00940000158481.g #9	ENSGT00940000159662 #10	ENSGT00940000156620 #11	ENSGT00940000164760 #12	ENSGT00390000016821 #14	ENSGT00940000157226 #15	ENSGT00940000154860 #16	ENSGT00990000214222	ENSGT00390000006196 #17	ENSGT00390000010991 #18	ENSGT00940000157405 #19	ENSGT00390000012559 #20	ENSGT00390000008679 #21	ENSGT00940000155426 #22	ENSGT00530000063981.b #23	ENSGT00390000006218 #24	ENSGT00940000160574 #25	ENSGT00390000016768 #26	ENSGT00940000154234.a #27	ENSGT00940000155379 #28	ENSGT00530000063822.a.a #29	ENSGT00940000156046 #30	ENSGT00390000001680 #31	ENSGT00940000159310 #32	ENSGT00940000160980 #33	ENSGT00390000018100.n #34	ENSGT00390000018100.m #35	ENSGT00940000157661 #36	ENSGT00390000009140 #37
Eastern brown snake	MODERN SPECIES	1	PRDM11 (ENSPTXG00000008699)	TP53I11 (ENSPTXG00000008698) #7	TSPAN18 (ENSPTXG00000008697) #8	ENSPTXG00000008696 #9	ALX4 (ENSPTXG00000008695) #10	EXT2 (ENSPTXG00000008693) #11	ENSPTXG00000008692 #12	C11orf96 (ENSPTXG00000008691) #14	ALKBH3 (ENSPTXG00000008690) #15	ENSPTXG00000008689	TTC17 (ENSPTXG00000008686) #17	API5 (ENSPTXG00000008685) #18	LRRC4C (ENSPTXG00000008684) #19	RAG2 (ENSPTXG00000008683) #20	RAG1 (ENSPTXG00000008682) #21	TRAF6 (ENSPTXG00000008681) #22	PRR5L (ENSPTXG00000008680) #23	COMMD9 (ENSPTXG00000008679) #24	LDLRAD3 (ENSPTXG00000008678) #25	FJX1 (ENSPTXG00000008677) #26	PAMR1 (ENSPTXG00000008676) #27	SLC1A2 (ENSPTXG00000008672) #28	CD44 (ENSPTXG00000008671) #29	PDHX (ENSPTXG00000008669) #30	APIP (ENSPTXG00000008668) #31	EHF (ENSPTXG00000008667) #32	ELF5 (ENSPTXG00000008666) #33	ENSPTXG00000007368 #34	ENSPTXG00000007359 #35	ABTB2 (ENSPTXG00000007354) #36	NAT10 (ENSPTXG00000007352) #37
Mainland tiger snake	MODERN SPECIES	9	ENSNSUG00000008730 #9	ALX4 (ENSNSUG00000008731) #10	EXT2 (ENSNSUG00000008732) #11	ENSNSUG00000008869 #12	C11orf96 (ENSNSUG00000008870) #14	ALKBH3 (ENSNSUG00000008871) #15	HSD17B12 (ENSNSUG00000008872) #16	ENSNSUG00000008873	TTC17 (ENSNSUG00000008875) #17	API5 (ENSNSUG00000008963) #18	ENSNSUG00000008964	LRRC4C (ENSNSUG00000008965) #19	ENSNSUG00000008966	RAG2 (ENSNSUG00000008967) #20	RAG1 (ENSNSUG00000008968) #21	TRAF6 (ENSNSUG00000008969) #22	PRR5L (ENSNSUG00000008970) #23	COMMD9 (ENSNSUG00000008978) #24	LDLRAD3 (ENSNSUG00000008979) #25	FJX1 (ENSNSUG00000008980) #26	PAMR1 (ENSNSUG00000008981) #27	SLC1A2 (ENSNSUG00000008983) #28	CD44 (ENSNSUG00000009221) #29	PDHX (ENSNSUG00000009222) #30	APIP (ENSNSUG00000009235) #31	EHF (ENSNSUG00000009236) #32	ELF5 (ENSNSUG00000009237) #33	ENSNSUG00000009259 #34	ENSNSUG00000009263 #35	ABTB2 (ENSNSUG00000009269) #36	NAT10 (ENSNSUG00000009284) #37
Blue-lipped sea krait	MODERN SPECIES	7417																TRAF6 (ENSLLTG00000010364) #22	PRR5L (ENSLLTG00000010388) #23
Lizard	MODERN SPECIES		ENSACAG00000028334	ENSACAG00000039353	ENSACAG00000036311	ENSACAG00000042258	ENSACAG00000035241	ENSACAG00000037078	ENSACAG00000038190	ENSACAG00000029279	ENSACAG00000037464	ENSACAG00000040924	ENSACAG00000034792	ENSACAG00000044911	ENSACAG00000045231	RAG2 (ENSACAG00000005102) #20	RAG1 (ENSACAG00000005106) #21	TRAF6 (ENSACAG00000040141) #22	PRR5L (ENSACAG00000005141) #23	COMMD9 (ENSACAG00000043977) #24	LDLRAD3 (ENSACAG00000005180) #25	ENSACAG00000038756	ENSACAG00000039043	ENSACAG00000042401	ENSACAG00000044094	TRIM44 (ENSACAG00000028675)	ENSACAG00000004544 #27	ENSACAG00000041619 #27	SLC1A2 (ENSACAG00000004365) #28	ENSACAG00000044506 #29	ENSACAG00000036690 #29	ENSACAG00000016081	FGF3 (ENSACAG00000040483)
Laterata	ANCESTRAL SPECIES	2	ENSGT00940000159837	ENSGT00390000017249 #7	ENSGT00940000157667 #8	ENSGT00940000158481.g #9	ENSGT00940000159662 #10	ENSGT00940000156620 #11	ENSGT00940000164760 #12	ENSGT00390000016821 #14	ENSGT00940000157226 #15	ENSGT00940000154860 #16	ENSGT00390000006196 #17	ENSGT00390000010991 #18	ENSGT00940000157405 #19	ENSGT00390000012559 #20	ENSGT00390000008679 #21	ENSGT00940000155426 #22	ENSGT00530000063981.b #23	ENSGT00390000006218 #24	ENSGT00940000160574 #25	ENSGT00440000034605	ENSGT00390000016768 #26	ENSGT00940000154234.a #27	ENSGT00940000155379 #28	ENSGT00530000063822.a.a #29	ENSGT00940000156046 #30	ENSGT00390000001680 #31	ENSGT00940000159310 #32	ENSGT00940000160980 #33	ENSGT00390000018100 #35	ENSGT00940000157661 #36	ENSGT00390000009140 #37
Argentine black and white tegu	MODERN SPECIES	3	C11orf96 (ENSSMRG00000005018) #14	ALKBH3 (ENSSMRG00000005011) #15	HSD17B12 (ENSSMRG00000004956) #16	TTC17 (ENSSMRG00000004923) #17	LSM8 (ENSSMRG00000004921)	ATP6V1F (ENSSMRG00000004918)	ATP6V1FNB (ENSSMRG00000004909)	API5 (ENSSMRG00000004889) #18	ENSSMRG00000004867	ENSSMRG00000004858	ENSSMRG00000004851	LRRC4C (ENSSMRG00000004842) #19	ENSSMRG00000004832	RAG2 (ENSSMRG00000004809) #20	RAG1 (ENSSMRG00000004802) #21	TRAF6 (ENSSMRG00000004731) #22	PRR5L (ENSSMRG00000004714) #23	COMMD9 (ENSSMRG00000004711) #24	LDLRAD3 (ENSSMRG00000004689) #25	TRIM44 (ENSSMRG00000004604)	FJX1 (ENSSMRG00000004580) #26	PAMR1 (ENSSMRG00000004579) #27	SLC1A2 (ENSSMRG00000004495) #28	ENSSMRG00000004484 #29	PDHX (ENSSMRG00000004403) #30	APIP (ENSSMRG00000004332) #31	EHF (ENSSMRG00000004321) #32	ELF5 (ENSSMRG00000004308) #33	CAT (ENSSMRG00000004301) #35	ABTB2 (ENSSMRG00000004293) #36	NAT10 (ENSSMRG00000004273) #37
Common wall lizard	MODERN SPECIES	15	SLC39A4 (ENSPMRG00000004907)	ENSPMRG00000004918	ENSPMRG00000004928	ENSPMRG00000004936	ADCK5 (ENSPMRG00000004955)	ENSPMRG00000004962	RECQL4 (ENSPMRG00000004968)	ENSPMRG00000004979	ENSPMRG00000004980	LRRC14 (ENSPMRG00000004985)	ENSPMRG00000005013	LRRC24 (ENSPMRG00000005018)	ENSPMRG00000005023	C8orf82 (ENSPMRG00000005030)	ENPP4 (ENSPMRG00000005034)	TRAF6 (ENSPMRG00000005038) #22	FUT11 (ENSPMRG00000005042)	ENSPMRG00000005047	ENSPMRG00000005056	SNRNP48 (ENSPMRG00000005066)	TKTL2 (ENSPMRG00000005093)	STX17 (ENSPMRG00000005131)	MAFA (ENSPMRG00000005153)	ZC3H3 (ENSPMRG00000005185)	ENSPMRG00000005236	ENSPMRG00000005463	ENSPMRG00000005466	NAPRT (ENSPMRG00000005477)	ENSPMRG00000005506	ENSPMRG00000005513	TIGD5 (ENSPMRG00000005518)
tuatara	MODERN SPECIES	1380														IFTAP (ENSSPUG00000019089)	RAG2 (ENSSPUG00000019087) #20	TRAF6 (ENSSPUG00000019081) #22	PRR5L (ENSSPUG00000019066) #23	COMMD9 (ENSSPUG00000019054) #24	LDLRAD3 (ENSSPUG00000019047) #25	TRIM44 (ENSSPUG00000019027)	ENSSPUG00000019019	FJX1 (ENSSPUG00000019016) #26	PAMR1 (ENSSPUG00000019008) #27	SLC1A2 (ENSSPUG00000018993) #28	CD44 (ENSSPUG00000018978) #29	PDHX (ENSSPUG00000018966) #30	APIP (ENSSPUG00000018960) #31	EHF (ENSSPUG00000018942) #32	ELF5 (ENSSPUG00000018927) #33	CAT (ENSSPUG00000018915) #35