Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000157667 #7	ENSGT00940000158481 #8	ENSGT00940000159662 #9	ENSGT00940000156620 #10	ENSGT00940000161101 #11	ENSGT00940000162841 #12	ENSGT00390000016821 #13	ENSGT00940000157226 #14	ENSGT00940000154860 #15	ENSGT00390000006196 #16	ENSGT00390000010991 #17	ENSGT00940000157405 #18	ENSGT00390000013149 #19	ENSGT00390000012559 #20	ENSGT00390000008679 #21	ENSGT00940000155426 #22	ENSGT00530000063981.b #23	ENSGT00390000006218 #24	ENSGT00940000160574 #25	ENSGT00440000034605 #26	ENSGT00390000016768 #27	ENSGT00940000154234.a #28	ENSGT00940000155379 #29	ENSGT00530000063822.a.a #30	ENSGT00940000156046 #31	ENSGT00390000001680 #32	ENSGT00940000159310 #33	ENSGT00940000160980 #34	ENSGT00390000018100 #35	ENSGT00940000157661 #36	ENSGT00390000009140 #37
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00940000157667 #7	ENSGT00940000158481 #8	ENSGT00940000159662 #9	ENSGT00940000156620 #10	ENSGT00940000161101 #11	ENSGT00940000162841 #12	ENSGT00390000016821 #13	ENSGT00940000157226 #14	ENSGT00940000154860 #15	ENSGT00390000006196 #16	ENSGT00390000010991 #17	ENSGT00940000157405 #18	ENSGT00390000013149 #19	ENSGT00390000012559 #20	ENSGT00390000008679 #21	ENSGT00940000155426 #22	ENSGT00530000063981.b #23	ENSGT00390000006218 #24	ENSGT00940000160574 #25	ENSGT00440000034605.f.a #26	ENSGT00390000016768 #27	ENSGT00940000154234.a #28	ENSGT00940000155379 #29	ENSGT00530000063822.a.a #30	ENSGT00940000156046 #31	ENSGT00390000001680 #32	ENSGT00940000159310 #33	ENSGT00940000160980 #34	ENSGT00390000018100 #35	ENSGT00940000157661 #36	ENSGT00390000009140 #37
Marmotini	ANCESTRAL SPECIES	22	ENSGT00940000157667 #7	ENSGT00940000158481 #8	ENSGT00940000159662 #9	ENSGT00940000156620 #10	ENSGT00940000161101 #11	ENSGT00940000162841 #12	ENSGT00390000016821 #13	ENSGT00940000157226 #14	ENSGT00940000154860 #15	ENSGT00390000006196 #16	ENSGT00390000010991 #17	ENSGT00940000157405 #18	ENSGT00390000013149 #19	ENSGT00390000012559 #20	ENSGT00390000008679 #21	ENSGT00940000155426 #22	ENSGT00530000063981.b #23	ENSGT00390000006218 #24	ENSGT00940000160574 #25	ENSGT00440000034605.f.a #26	ENSGT00940000154234.a #28	ENSGT00940000155379 #29	ENSGT00530000063822.a.a #30	ENSGT00940000156046 #31	ENSGT00390000001680 #32	ENSGT00940000159310 #33	ENSGT00940000160980 #34	ENSGT00390000018100 #35	ENSGT00940000157661 #36	ENSGT00390000009140.g #37	ENSGT00940000153438.a
Alpin marmot	MODERN SPECIES	3	ALX4 (ENSMMMG00000011816) #9	EXT2 (ENSMMMG00000011786) #10	ACCS (ENSMMMG00000011728) #11	ENSMMMG00000011721	ACCSL (ENSMMMG00000011649) #12	C11orf96 (ENSMMMG00000011645) #13	ALKBH3 (ENSMMMG00000011630) #14	ENSMMMG00000011626	HSD17B12 (ENSMMMG00000011610) #15	TTC17 (ENSMMMG00000011550) #16	API5 (ENSMMMG00000011483) #17	LRRC4C (ENSMMMG00000011362) #18	IFTAP (ENSMMMG00000011311) #19	RAG2 (ENSMMMG00000011304) #20	RAG1 (ENSMMMG00000011298) #21	TRAF6 (ENSMMMG00000011285) #22	PRR5L (ENSMMMG00000011238) #23	COMMD9 (ENSMMMG00000011235) #24	LDLRAD3 (ENSMMMG00000011216) #25	TRIM44 (ENSMMMG00000011195) #26	PAMR1 (ENSMMMG00000011162) #28	SLC1A2 (ENSMMMG00000011014) #29	CD44 (ENSMMMG00000010323) #30	PDHX (ENSMMMG00000010279) #31	APIP (ENSMMMG00000010262) #32	EHF (ENSMMMG00000010179) #33	ELF5 (ENSMMMG00000010124) #34	CAT (ENSMMMG00000010087) #35	ABTB2 (ENSMMMG00000010060) #36	NAT10 (ENSMMMG00000009992) #37	CAPRIN1 (ENSMMMG00000008164)
Marmotini_b	ANCESTRAL SPECIES	23	ENSGT00940000157667 #7	ENSGT00940000158481 #8	ENSGT00940000159662 #9	ENSGT00940000156620 #10	ENSGT00940000161101 #11	ENSGT00940000162841 #12	ENSGT00390000016821 #13	ENSGT00940000157226 #14	ENSGT00940000154860 #15	ENSGT00390000006196 #16	ENSGT00390000010991 #17	ENSGT00940000157405 #18	ENSGT00390000013149 #19	ENSGT00390000012559 #20	ENSGT00390000008679 #21	ENSGT00940000155426 #22	ENSGT00530000063981.b #23	ENSGT00390000006218 #24	ENSGT00940000160574 #25	ENSGT00440000034605.f.a #26	ENSGT00940000154234.a #28	ENSGT00940000155379 #29	ENSGT00530000063822.a.a #30	ENSGT00940000156046 #31	ENSGT00390000001680 #32	ENSGT00940000159310 #33	ENSGT00940000160980 #34	ENSGT00390000018100 #35	ENSGT00940000157661 #36	ENSGT00390000009140.g #37	ENSGT00940000153438.a
Arctic ground squirrel	MODERN SPECIES	10				ENSUPAG00010001329	ACCSL (ENSUPAG00010001299) #12	C11orf96 (ENSUPAG00010001291) #13	ALKBH3 (ENSUPAG00010001256) #14	HSD17B12 (ENSUPAG00010001237) #15	ENSUPAG00010001201 #16	API5 (ENSUPAG00010001168) #17	ENSUPAG00010001157	LRRC4C (ENSUPAG00010001136) #18	IFTAP (ENSUPAG00010001086) #19	RAG2 (ENSUPAG00010001080) #20	RAG1 (ENSUPAG00010001077) #21	TRAF6 (ENSUPAG00010001061) #22	PRR5L (ENSUPAG00010001016) #23	COMMD9 (ENSUPAG00010001008) #24	LDLRAD3 (ENSUPAG00010000987) #25	ENSUPAG00010000969 #26	PAMR1 (ENSUPAG00010000955) #28	SLC1A2 (ENSUPAG00010000901) #29	CD44 (ENSUPAG00010000106) #30	PDHX (ENSUPAG00010000084) #31	APIP (ENSUPAG00010000057) #32	EHF (ENSUPAG00010019516) #33	ELF5 (ENSUPAG00010019491) #34	CAT (ENSUPAG00010019472) #35	ABTB2 (ENSUPAG00010019465) #36	NAT10 (ENSUPAG00010019438) #37	CAPRIN1 (ENSUPAG00010019403)
Squirrel	MODERN SPECIES	133													IFTAP (ENSSTOG00000029068) #19	RAG2 (ENSSTOG00000012558) #20	RAG1 (ENSSTOG00000025584) #21	TRAF6 (ENSSTOG00000007303) #22	PRR5L (ENSSTOG00000022180) #23	COMMD9 (ENSSTOG00000007267) #24	LDLRAD3 (ENSSTOG00000007228) #25	TRIM44 (ENSSTOG00000023760) #26	PAMR1 (ENSSTOG00000000826) #28	SLC1A2 (ENSSTOG00000000822) #29	ENSSTOG00000000813 #30	PDHX (ENSSTOG00000004403) #31	APIP (ENSSTOG00000004390) #32	ENSSTOG00000008622 #33	ELF5 (ENSSTOG00000008610) #34	CAT (ENSSTOG00000008595) #35	ABTB2 (ENSSTOG00000001839) #36	ENSSTOG00000001817 #37	CAPRIN1 (ENSSTOG00000006945)
Eurasian red squirrel	MODERN SPECIES	2	ALX4 (ENSSVLG00005017428) #9	EXT2 (ENSSVLG00005017472) #10	ACCS (ENSSVLG00005017673) #11	ACCSL (ENSSVLG00005017862) #12	C11orf96 (ENSSVLG00005018003) #13	ALKBH3 (ENSSVLG00005018027) #14	HSD17B12 (ENSSVLG00005018072) #15	ENSSVLG00005018129	TTC17 (ENSSVLG00005018176) #16	ENSSVLG00005018298 #17	LRRC4C (ENSSVLG00005018979) #18	ENSSVLG00005019010	ENSSVLG00005019047 #19	RAG2 (ENSSVLG00005019171) #20	RAG1 (ENSSVLG00005019195) #21	TRAF6 (ENSSVLG00005019219) #22	PRR5L (ENSSVLG00005019340) #23	COMMD9 (ENSSVLG00005019522) #24	LDLRAD3 (ENSSVLG00005019672) #25	ENSSVLG00005019782 #26	ENSSVLG00005019851	FJX1 (ENSSVLG00005019889) #27	PAMR1 (ENSSVLG00005019988) #28	SLC1A2 (ENSSVLG00005020571) #29	CD44 (ENSSVLG00005021288) #30	PDHX (ENSSVLG00005021554) #31	APIP (ENSSVLG00005021719) #32	ENSSVLG00005021768 #33	ELF5 (ENSSVLG00005021853) #34	CAT (ENSSVLG00005022137) #35	ENSSVLG00005022214
Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00390000017249	ENSGT00940000157667 #7	ENSGT00940000158481 #8	ENSGT00940000159662 #9	ENSGT00940000156620 #10	ENSGT00940000161101 #11	ENSGT00390000016821 #13	ENSGT00940000157226 #14	ENSGT00940000154860 #15	ENSGT00390000006196 #16	ENSGT00390000010991.p.a #17	ENSGT00940000157405 #18	ENSGT00390000013149 #19	ENSGT00390000012559 #20	ENSGT00390000008679 #21	ENSGT00940000155426 #22	ENSGT00530000063981.b #23	ENSGT00390000006218 #24	ENSGT00940000160574 #25	ENSGT00440000034605 #26	ENSGT00390000016768 #27	ENSGT00940000154234.a #28	ENSGT00940000155379 #29	ENSGT00530000063822.a.a #30	ENSGT00940000156046 #31	ENSGT00390000001680 #32	ENSGT00940000159310 #33	ENSGT00940000160980 #34	ENSGT00390000018100 #35	ENSGT00940000157661 #36	ENSGT00390000009140 #37
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00940000157667 #7	ENSGT00940000158481 #8	ENSGT00940000159662 #9	ENSGT00940000156620 #10	ENSGT00940000161101 #11	ENSGT00390000016821 #13	ENSGT00940000157226 #14	ENSGT00940000154860 #15	ENSGT00390000006196 #16	ENSGT00390000010991.o #17	ENSGT00940000155035.e.b	ENSGT00940000157405 #18	ENSGT00390000013149 #19	ENSGT00390000012559 #20	ENSGT00390000008679 #21	ENSGT00940000155426 #22	ENSGT00530000063981.b #23	ENSGT00390000006218 #24	ENSGT00940000160574 #25	ENSGT00440000034605 #26	ENSGT00390000016768 #27	ENSGT00940000154234.a #28	ENSGT00940000155379 #29	ENSGT00530000063822.a.a #30	ENSGT00940000156046 #31	ENSGT00390000001680 #32	ENSGT00940000159310 #33	ENSGT00940000160980 #34	ENSGT00390000018100 #35	ENSGT00940000157661 #36	ENSGT00390000009140 #37
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00940000157667 #7	ENSGT00940000158481 #8	ENSGT00940000159662 #9	ENSGT00940000156620 #10	ENSGT00940000161101 #11	ENSGT00390000016821 #13	ENSGT00940000157226 #14	ENSGT00940000154860 #15	ENSGT00390000006196 #16	ENSGT00390000010991.o #17	ENSGT00940000155035.e.b	ENSGT00940000157405 #18	ENSGT00390000013149 #19	ENSGT00390000012559 #20	ENSGT00390000008679 #21	ENSGT00940000155426 #22	ENSGT00530000063981.b #23	ENSGT00390000006218 #24	ENSGT00940000160574 #25	ENSGT00440000034605 #26	ENSGT00390000016768 #27	ENSGT00940000154234.a #28	ENSGT00940000155379 #29	ENSGT00530000063822.a.a #30	ENSGT00940000156046 #31	ENSGT00390000001680 #32	ENSGT00940000159310 #33	ENSGT00940000160980 #34	ENSGT00390000018100 #35	ENSGT00940000157661 #36	ENSGT00390000009140 #37
Long-tailed chinchilla	MODERN SPECIES	129	CD82 (ENSCLAG00000013557) #8	ALX4 (ENSCLAG00000013928) #9	EXT2 (ENSCLAG00000014428) #10	C11orf96 (ENSCLAG00000018096) #13	ALKBH3 (ENSCLAG00000016579) #14	HSD17B12 (ENSCLAG00000016216) #15	TTC17 (ENSCLAG00000012857) #16	API5 (ENSCLAG00000013707) #17	ENSCLAG00000015133	LRRC4C (ENSCLAG00000015479) #18	ENSCLAG00000013706	ENSCLAG00000017889	IFTAP (ENSCLAG00000016504) #19	RAG2 (ENSCLAG00000016493) #20	RAG1 (ENSCLAG00000015510) #21	TRAF6 (ENSCLAG00000015588) #22	PRR5L (ENSCLAG00000015373) #23	COMMD9 (ENSCLAG00000014761) #24	LDLRAD3 (ENSCLAG00000013692) #25	TRIM44 (ENSCLAG00000014212) #26	FJX1 (ENSCLAG00000014978) #27	PAMR1 (ENSCLAG00000014744) #28	SLC1A2 (ENSCLAG00000014237) #29	ENSCLAG00000015376 #30	PDHX (ENSCLAG00000014466) #31	APIP (ENSCLAG00000014703) #32	EHF (ENSCLAG00000017235) #33	ELF5 (ENSCLAG00000013934) #34	CAT (ENSCLAG00000013690) #35	ABTB2 (ENSCLAG00000014834) #36	NAT10 (ENSCLAG00000016692) #37
Degu	MODERN SPECIES	59	ENSODEG00000020538	C11orf96 (ENSODEG00000020497) #13	ALKBH3 (ENSODEG00000017204) #14	HSD17B12 (ENSODEG00000016636) #15	ENSODEG00000016649	TTC17 (ENSODEG00000016728) #16	ENSODEG00000016280 #17	ENSODEG00000016521	ENSODEG00000020406	ENSODEG00000020370	LRRC4C (ENSODEG00000020475) #18	ENSODEG00000020466	IFTAP (ENSODEG00000016540) #19	RAG2 (ENSODEG00000020447) #20	RAG1 (ENSODEG00000020338) #21	TRAF6 (ENSODEG00000017071) #22	PRR5L (ENSODEG00000016913) #23	COMMD9 (ENSODEG00000017403) #24	LDLRAD3 (ENSODEG00000017384) #25	ENSODEG00000016381 #26	FJX1 (ENSODEG00000016768) #27	ENSODEG00000016254	PAMR1 (ENSODEG00000016795) #28	SLC1A2 (ENSODEG00000016926) #29	ENSODEG00000016446 #30	PDHX (ENSODEG00000016591) #31	ENSODEG00000016598	ENSODEG00000016570 #32	EHF (ENSODEG00000017375) #33	ELF5 (ENSODEG00000016572) #34	CAT (ENSODEG00000016770) #35
Guinea pig	MODERN SPECIES	92												ENSCPOG00000020978	IFTAP (ENSCPOG00000012798) #19	RAG2 (ENSCPOG00000020441) #20	RAG1 (ENSCPOG00000004516) #21	TRAF6 (ENSCPOG00000004507) #22	PRR5L (ENSCPOG00000030786) #23	COMMD9 (ENSCPOG00000010648) #24	LDLRAD3 (ENSCPOG00000035009) #25	TRIM44 (ENSCPOG00000011263) #26	FJX1 (ENSCPOG00000022249) #27	PAMR1 (ENSCPOG00000007812) #28	SLC1A2 (ENSCPOG00000007801) #29	CD44 (ENSCPOG00000007792) #30	PDHX (ENSCPOG00000003099) #31	APIP (ENSCPOG00000003097) #32	EHF (ENSCPOG00000012596) #33	ELF5 (ENSCPOG00000012593) #34	CAT (ENSCPOG00000012582) #35	ABTB2 (ENSCPOG00000020779) #36	NAT10 (ENSCPOG00000015736) #37
Naked mole-rat female	MODERN SPECIES	14	ENSHGLG00000032198	ENSHGLG00000035834	ACCS (ENSHGLG00000018000) #11	C11orf96 (ENSHGLG00000035452) #13	ALKBH3 (ENSHGLG00000019437) #14	HSD17B12 (ENSHGLG00000043869) #15	TTC17 (ENSHGLG00000017796) #16	ENSHGLG00000013322 #17	ENSHGLG00000047607	LRRC4C (ENSHGLG00000042650) #18	ENSHGLG00000041917	ENSHGLG00000044878	IFTAP (ENSHGLG00000007037) #19	RAG2 (ENSHGLG00000020564) #20	RAG1 (ENSHGLG00000020565) #21	TRAF6 (ENSHGLG00000010513) #22	PRR5L (ENSHGLG00000006197) #23	COMMD9 (ENSHGLG00000039189) #24	LDLRAD3 (ENSHGLG00000009909) #25	ENSHGLG00000035280	TRIM44 (ENSHGLG00000006623) #26	FJX1 (ENSHGLG00000038500) #27	ENSHGLG00000038577	PAMR1 (ENSHGLG00000007733) #28	SLC1A2 (ENSHGLG00000010072) #29	CD44 (ENSHGLG00000011767) #30	ENSHGLG00000047526	ENSHGLG00000040571	ENSHGLG00000010978 #31	APIP (ENSHGLG00000011839) #32	EHF (ENSHGLG00000009758) #33