Mammalia	ANCESTRAL SPECIES	26	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000166431	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00940000166226	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT00940000170035	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35
Theria	ANCESTRAL SPECIES	14	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000166431	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00940000166226	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35
Eutheria	ANCESTRAL SPECIES	12	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000166431	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00940000166226	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00940000158921	ENSGT01070000257281	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000166431	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00940000166226	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00510000047831	ENSGT00940000158921	ENSGT01070000257281	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00940000166226	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00510000047831	ENSGT00940000158921	ENSGT01070000257281	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00940000166226	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00940000166226	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35
Carnivora	ANCESTRAL SPECIES		ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00940000166226	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35
Felidae	ANCESTRAL SPECIES	1	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a.d #34	ENSGT00940000159386 #35	ENSGT00550000074845 #37	ENSGT00950000182865.b.a.a
Panthera	ANCESTRAL SPECIES	3	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B.c.a #32	ENSGT00950000183095.a.a.d #34	ENSGT00940000159386 #35	ENSGT00550000074845 #37	ENSGT00950000182865.b.a.a
Panthera_a	ANCESTRAL SPECIES	7	ENSGT00940000165456	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B.c.a #32	ENSGT00950000183095.a.a.c #33	ENSGT00970000193421.B.d ##32	ENSGT00950000183095.a.a.d #34	ENSGT00940000159386 #35
leopard	MODERN SPECIES	112																EAPP (ENSPPRG00000009599) #22	EGLN3 (ENSPPRG00000009618) #23	NPAS3 (ENSPPRG00000010049) #24	AKAP6 (ENSPPRG00000010405) #25	ARHGAP5 (ENSPPRG00000010531) #26	ENSPPRG00000010606 #27	NUBPL (ENSPPRG00000010686) #28	DTD2 (ENSPPRG00000010899) #29	HEATR5A (ENSPPRG00000010977) #30	HECTD1 (ENSPPRG00000011166) #31	ENSPPRG00000011288 #32	ENSPPRG00000011315 #33	ENSPPRG00000011448 #34	COCH (ENSPPRG00000011542) #35	ENSPPRG00000011631 #36	SCFD1 (ENSPPRG00000011656) #37
lion	MODERN SPECIES	6	RALGAPA1 (ENSPLOG00000002123)	INSM2 (ENSPLOG00000002008)	ENSPLOG00000001985	ENSPLOG00000001964	ENSPLOG00000001956	NFKBIA (ENSPLOG00000001934)	PSMA6 (ENSPLOG00000001875)	PRORP (ENSPLOG00000001810)	PPP2R3C (ENSPLOG00000001758)	FAM177A1 (ENSPLOG00000001730)	SRP54 (ENSPLOG00000001676)	ENSPLOG00000001640	BAZ1A (ENSPLOG00000001606)	ENSPLOG00000001550	ENSPLOG00000001525	EAPP (ENSPLOG00000001486) #22	SPTSSA (ENSPLOG00000001474)	ENSPLOG00000001468	EGLN3 (ENSPLOG00000001437) #23	ENSPLOG00000001420	NPAS3 (ENSPLOG00000001299) #24	AKAP6 (ENSPLOG00000001171) #25	ARHGAP5 (ENSPLOG00000001022) #26	NUBPL (ENSPLOG00000000974) #28	GPR33 (ENSPLOG00000000949)	DTD2 (ENSPLOG00000000933) #29	HEATR5A (ENSPLOG00000000896) #30	HECTD1 (ENSPLOG00000000806) #31	AP4S1 (ENSPLOG00000000730) ##32	STRN3 (ENSPLOG00000000594) #34	COCH (ENSPLOG00000000512) #35
Tiger	MODERN SPECIES	578																EAPP (ENSPTIG00000018266) #22	EGLN3 (ENSPTIG00000017846) #23	NPAS3 (ENSPTIG00000015688) #24	AKAP6 (ENSPTIG00000012016) #25	ARHGAP5 (ENSPTIG00000011092) #26	NUBPL (ENSPTIG00000009627) #28	DTD2 (ENSPTIG00000008518) #29	HEATR5A (ENSPTIG00000003357) #30	ENSPTIG00000000922	HECTD1 (ENSPTIG00000020313) #31	ENSPTIG00000019757 #32	STRN3 (ENSPTIG00000018841) #34	COCH (ENSPTIG00000017113) #35	SCFD1 (ENSPTIG00000015762) #37	G2E3 (ENSPTIG00000013202)	PRKD1 (ENSPTIG00000011129)
Cat	MODERN SPECIES	237	BRMS1L (ENSFCAG00000024948)	RALGAPA1 (ENSFCAG00000012361)	INSM2 (ENSFCAG00000025118)	ENSFCAG00000035826	ENSFCAG00000050300	NFKBIA (ENSFCAG00000006671)	PSMA6 (ENSFCAG00000026276)	PRORP (ENSFCAG00000004383)	PPP2R3C (ENSFCAG00000030690)	FAM177A1 (ENSFCAG00000043712)	SRP54 (ENSFCAG00000032033)	ENSFCAG00000029463	BAZ1A (ENSFCAG00000024924)	CFL2 (ENSFCAG00000008480)	SNX6 (ENSFCAG00000018851)	EAPP (ENSFCAG00000030251) #22	SPTSSA (ENSFCAG00000042893)	ENSFCAG00000023772	EGLN3 (ENSFCAG00000040826) #23	NPAS3 (ENSFCAG00000041731) #24	AKAP6 (ENSFCAG00000010934) #25	ARHGAP5 (ENSFCAG00000024536) #26	NUBPL (ENSFCAG00000024538) #28	GPR33 (ENSFCAG00000030877)	DTD2 (ENSFCAG00000031441) #29	HEATR5A (ENSFCAG00000014756) #30	ENSFCAG00000038310	HECTD1 (ENSFCAG00000001734) #31	AP4S1 (ENSFCAG00000005738) #32	STRN3 (ENSFCAG00000013708) #34	COCH (ENSFCAG00000011638) #35
Caniformia	ANCESTRAL SPECIES	15	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00940000166226	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35
Caniformia_b	ANCESTRAL SPECIES	14	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00940000166226	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37
Ursidae	ANCESTRAL SPECIES	10	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00390000011943.a.a.b	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37
Ursus	ANCESTRAL SPECIES	202																ENSGT00390000001332 #22	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000016972.a.a.b.b.a	ENSGT00390000006205.b #30	ENSGT00390000011943.a.a.b	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37
Polar bear	MODERN SPECIES	413																EAPP (ENSUMAG00000010403) #22	EGLN3 (ENSUMAG00000010391) #23	NPAS3 (ENSUMAG00000010286) #24	AKAP6 (ENSUMAG00000010177) #25	ENSUMAG00000010161	ARHGAP5 (ENSUMAG00000010158) #26	NUBPL (ENSUMAG00000010133) #28	GPR33 (ENSUMAG00000010119)	ENSUMAG00000010115 #29	ENSUMAG00000010111	HEATR5A (ENSUMAG00000007915) #30	ENSUMAG00000007548	HECTD1 (ENSUMAG00000007523) #31	AP4S1 (ENSUMAG00000007515) #32	STRN3 (ENSUMAG00000006765) #33	COCH (ENSUMAG00000006665) #35
Giant Panda	MODERN SPECIES	12	NKX2-1 (ENSAMEG00000031459)	MBIP (ENSAMEG00000013537)	BRMS1L (ENSAMEG00000015738)	RALGAPA1 (ENSAMEG00000015649)	INSM2 (ENSAMEG00000019215)	NFKBIA (ENSAMEG00000015629)	PSMA6 (ENSAMEG00000015614)	PRORP (ENSAMEG00000015610)	PPP2R3C (ENSAMEG00000015586)	FAM177A1 (ENSAMEG00000015581)	SRP54 (ENSAMEG00000015544)	ENSAMEG00000015534	BAZ1A (ENSAMEG00000015512)	CFL2 (ENSAMEG00000015508)	SNX6 (ENSAMEG00000015476)	EAPP (ENSAMEG00000006454) #22	SPTSSA (ENSAMEG00000028071)	EGLN3 (ENSAMEG00000023682) #23	NPAS3 (ENSAMEG00000029238) #24	AKAP6 (ENSAMEG00000015685) #25	ARHGAP5 (ENSAMEG00000015709) #26	NUBPL (ENSAMEG00000015724) #28	GPR33 (ENSAMEG00000019764)	DTD2 (ENSAMEG00000024284) #29	HEATR5A (ENSAMEG00000015736) #30	ENSAMEG00000028378	HECTD1 (ENSAMEG00000015770) #31	AP4S1 (ENSAMEG00000015823) #32	STRN3 (ENSAMEG00000015829) #33	COCH (ENSAMEG00000015859) #35	SCFD1 (ENSAMEG00000005072) #37
Mustelinae	ANCESTRAL SPECIES	32	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00940000166226	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37
Ferret	DUPLICATION
Ferret	MODERN SPECIES	259				ENSMPUG00000018691	VSTM5 (ENSMPUG00000010671)	MED17 (ENSMPUG00000010667)	C11orf54 (ENSMPUG00000010663)	TAF1D (ENSMPUG00000010659)	CEP295 (ENSMPUG00000010628)	ENSMPUG00000010626	ENSMPUG00000010589	SLC36A4 (ENSMPUG00000010579)	ENSMPUG00000010574	ENSMPUG00000010572	FAT3 (ENSMPUG00000010556)	ENSMPUG00000018690 #22	ENSMPUG00000018689	CHORDC1 (ENSMPUG00000010548)	NAALAD2 (ENSMPUG00000010401)	FOLH1 (ENSMPUG00000010390)	NOX4 (ENSMPUG00000010385)	TYR (ENSMPUG00000010381)	GRM5 (ENSMPUG00000010375)	CTSC (ENSMPUG00000010370)	RAB38 (ENSMPUG00000010366)	TMEM135 (ENSMPUG00000010358)	ENSMPUG00000010356	FZD4 (ENSMPUG00000010353)	PRSS23 (ENSMPUG00000018688)	ME3 (ENSMPUG00000010166)	ENSMPUG00000018687
Ferret	MODERN SPECIES	384																ENSMPUG00000001029 #22	EGLN3 (ENSMPUG00000001043) #23	NPAS3 (ENSMPUG00000001045) #24	ENSMPUG00000001046	AKAP6 (ENSMPUG00000001051) #25	ARHGAP5 (ENSMPUG00000001057) #26	NUBPL (ENSMPUG00000001061) #28	GPR33 (ENSMPUG00000019234)	DTD2 (ENSMPUG00000001065) #29	HEATR5A (ENSMPUG00000001067) #30
American mink	MODERN SPECIES	84			RALGAPA1 (ENSNVIG00000001947)	INSM2 (ENSNVIG00000002180)	NFKBIA (ENSNVIG00000002189)	PSMA6 (ENSNVIG00000002214)	PRORP (ENSNVIG00000002327)	PPP2R3C (ENSNVIG00000002372)	FAM177A1 (ENSNVIG00000002414)	ENSNVIG00000002439	SRP54 (ENSNVIG00000002461)	ENSNVIG00000002515	BAZ1A (ENSNVIG00000002565)	CFL2 (ENSNVIG00000002744)	SNX6 (ENSNVIG00000002824)	EAPP (ENSNVIG00000002902) #22	SPTSSA (ENSNVIG00000002933)	ENSNVIG00000002935	EGLN3 (ENSNVIG00000002975) #23	NPAS3 (ENSNVIG00000002999) #24	AKAP6 (ENSNVIG00000003054) #25	ARHGAP5 (ENSNVIG00000003107) #26	NUBPL (ENSNVIG00000003207) #28	GPR33 (ENSNVIG00000003227)	DTD2 (ENSNVIG00000003240) #29	F5H619 (ENSNVIG00000003257) #30	ENSNVIG00000003418	HECTD1 (ENSNVIG00000003432) #31	AP4S1 (ENSNVIG00000003530) #32	STRN3 (ENSNVIG00000003579) #33	COCH (ENSNVIG00000003618) #35
Canidae	DUPLICATION
Canidae	ANCESTRAL SPECIES	4	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000163080	ENSGT00550000074807.d.j	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332.w #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00940000165919	ENSGT00970000193421.B.h.a #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35
Canis_lupus	ANCESTRAL SPECIES	8	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000163080	ENSGT00550000074807.d.i.a.b	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332.w #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a.o #29	ENSGT00390000006205.b #30	ENSGT00390000008918.a.a	ENSGT00940000156572 #31	ENSGT00940000165919	ENSGT00970000193421.B.h.a #32	ENSGT00950000183095.a.a #33
Dingo	MODERN SPECIES	161	MBIP (ENSCAFG00020022316)	BRMS1L (ENSCAFG00020022326)	RALGAPA1 (ENSCAFG00020022394)	INSM2 (ENSCAFG00020023381)	ENSCAFG00020023383	ENSCAFG00020023389	PRORP (ENSCAFG00020023411)	PPP2R3C (ENSCAFG00020023418)	FAM177A1 (ENSCAFG00020023422)	SRP54 (ENSCAFG00020023427)	ENSCAFG00020023434	BAZ1A (ENSCAFG00020023452)	CFL2 (ENSCAFG00020023554)	ENSCAFG00020023557	ENSCAFG00020023570	EAPP (ENSCAFG00020023572) #22	SPTSSA (ENSCAFG00020023575)	EGLN3 (ENSCAFG00020023576) #23	NPAS3 (ENSCAFG00020023578) #24	AKAP6 (ENSCAFG00020023612) #25	ARHGAP5 (ENSCAFG00020023643) #26	ENSCAFG00020023647	ENSCAFG00020023650	ENSCAFG00020023655 #28	ENSCAFG00020023659	GPR33 (ENSCAFG00020023662)	ENSCAFG00020023663 #29	HEATR5A (ENSCAFG00020023674) #30	ENSCAFG00020023694	HECTD1 (ENSCAFG00020023723) #31	AP4S1 (ENSCAFG00020024081) #32
Dog	MODERN SPECIES	36	MBIP (ENSCAFG00845002536)	BRMS1L (ENSCAFG00845002506)	RALGAPA1 (ENSCAFG00845002236)	INSM2 (ENSCAFG00845002072)	NFKBIA (ENSCAFG00845002047)	PSMA6 (ENSCAFG00845001929)	PSMA6 (ENSCAFG00845001872)	PPP2R3C (ENSCAFG00845001831)	FAM177A1 (ENSCAFG00845001803)	SRP54 (ENSCAFG00845001751)	ENSCAFG00845001684	BAZ1A (ENSCAFG00845001639)	CFL2 (ENSCAFG00845001611)	ENSCAFG00845001579	ENSCAFG00845001517	EAPP (ENSCAFG00845001503) #22	ENSCAFG00845001492	ENSCAFG00845001464	EGLN3 (ENSCAFG00845012583) #23	NPAS3 (ENSCAFG00845012355) #24	AKAP6 (ENSCAFG00845012171) #25	ARHGAP5 (ENSCAFG00845012045) #26	NUBPL (ENSCAFG00845011856) #28	GPR33 (ENSCAFG00845011804)	DTD2 (ENSCAFG00845011795) #29	ENSCAFG00845011772	HEATR5A (ENSCAFG00845011579) #30	HECTD1 (ENSCAFG00845011087) #31	ENSCAFG00845011023	AP4S1 (ENSCAFG00845010937) #32	STRN3 (ENSCAFG00845010851) #33
Red fox	MODERN SPECIES	65																ENSVVUG00000029955 #22	ENSVVUG00000029949 #23	NPAS3 (ENSVVUG00000029947) #24	AKAP6 (ENSVVUG00000029932) #25	ENSVVUG00000029926	ARHGAP5 (ENSVVUG00000029922) #26	ENSVVUG00000029921	NUBPL (ENSVVUG00000029910) #28	ENSVVUG00000029909	GPR33 (ENSVVUG00000029908)	DTD2 (ENSVVUG00000029907) #29	HEATR5A (ENSVVUG00000029806) #30	HECTD1 (ENSVVUG00000029612) #31	ENSVVUG00000029588	ENSVVUG00000029587 #32	STRN3 (ENSVVUG00000029456) #33
Canidae	ANCESTRAL SPECIES																	ENSGT00390000001332.x #22
Red fox	MODERN SPECIES	16	NAGK (ENSVVUG00000007503)	PAIP2B (ENSVVUG00000007493)	ZNF638 (ENSVVUG00000007369)	DYSF (ENSVVUG00000007163)	CYP26B1 (ENSVVUG00000007121)	EXOC6B (ENSVVUG00000006974)	SPR (ENSVVUG00000006933)	EMX1 (ENSVVUG00000006929)	SFXN5 (ENSVVUG00000006892)	RAB11FIP5 (ENSVVUG00000006886)	SMYD5 (ENSVVUG00000006859)	PRADC1 (ENSVVUG00000006845)	ENSVVUG00000005352	FBXO41 (ENSVVUG00000005266)	EGR4 (ENSVVUG00000005259)	ENSVVUG00000005256 #22	ALMS1 (ENSVVUG00000004856)	ENSVVUG00000004791	TPRKB (ENSVVUG00000004786)	DUSP11 (ENSVVUG00000004768)	CUNH2orf78 (ENSVVUG00000004761)	STAMBP (ENSVVUG00000004755)	ACTG2 (ENSVVUG00000004752)	DGUOK (ENSVVUG00000004734)	TET3 (ENSVVUG00000004693)	BOLA3 (ENSVVUG00000004673)	MOB1A (ENSVVUG00000004664)	MTHFD2 (ENSVVUG00000004659)	SLC4A5 (ENSVVUG00000004630)	ENSVVUG00000004625	DCTN1 (ENSVVUG00000004552)
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37	ENSGT00950000182865.b.a.a
Chiroptera	ANCESTRAL SPECIES	34	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37	ENSGT00950000182865.b.a.a
Microchiroptera	ANCESTRAL SPECIES	29	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37	ENSGT00950000182865.b.a.a
Microbat	MODERN SPECIES	959	ENSMLUG00000004184	BRMS1L (ENSMLUG00000008089)	RALGAPA1 (ENSMLUG00000007979)	ENSMLUG00000023852	INSM2 (ENSMLUG00000026985)	ENSMLUG00000004519	PSMA6 (ENSMLUG00000010228)	PRORP (ENSMLUG00000010205)	PPP2R3C (ENSMLUG00000024559)	FAM177A1 (ENSMLUG00000010187)	SRP54 (ENSMLUG00000008958)	ENSMLUG00000023750	BAZ1A (ENSMLUG00000006672)	SNX6 (ENSMLUG00000007049)	ENSMLUG00000030716	EAPP (ENSMLUG00000013814) #22	SPTSSA (ENSMLUG00000013821)	EGLN3 (ENSMLUG00000014716) #23	NPAS3 (ENSMLUG00000016973) #24	AKAP6 (ENSMLUG00000007138) #25	ARHGAP5 (ENSMLUG00000026153) #26	NUBPL (ENSMLUG00000004368) #28	DTD2 (ENSMLUG00000005789) #29	HEATR5A (ENSMLUG00000005763) #30	HECTD1 (ENSMLUG00000013003) #31	AP4S1 (ENSMLUG00000011671) #32	STRN3 (ENSMLUG00000011642) #33	COCH (ENSMLUG00000011622) #35	SCFD1 (ENSMLUG00000000542) #37	G2E3 (ENSMLUG00000000531)	ENSMLUG00000027139
Greater horseshoe bat	MODERN SPECIES	24	BRMS1L (ENSRFEG00010003180)	RALGAPA1 (ENSRFEG00010003084)	INSM2 (ENSRFEG00010003015)	ENSRFEG00010002998	NFKBIA (ENSRFEG00010002978)	ENSRFEG00010002929	PRORP (ENSRFEG00010002863)	PPP2R3C (ENSRFEG00010002782)	FAM177A1 (ENSRFEG00010002737)	SRP54 (ENSRFEG00010002671)	ENSRFEG00010002630	BAZ1A (ENSRFEG00010002589)	CFL2 (ENSRFEG00010002557)	ENSRFEG00010002540	SNX6 (ENSRFEG00010002499)	EAPP (ENSRFEG00010002434) #22	SPTSSA (ENSRFEG00010002421)	EGLN3 (ENSRFEG00010002399) #23	NPAS3 (ENSRFEG00010002279) #24	AKAP6 (ENSRFEG00010002160) #25	ENSRFEG00010002109	ARHGAP5 (ENSRFEG00010002064) #26	NUBPL (ENSRFEG00010002035) #28	GPR33 (ENSRFEG00010002026)	DTD2 (ENSRFEG00010002009) #29	HEATR5A (ENSRFEG00010001860) #30	HECTD1 (ENSRFEG00010001711) #31	AP4S1 (ENSRFEG00010001649) #32	STRN3 (ENSRFEG00010001558) #33	COCH (ENSRFEG00010001503) #35	ENSRFEG00010001476
Megabat	MODERN SPECIES	5313																EAPP (ENSPVAG00000010091) #22
Equus	ANCESTRAL SPECIES	54	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT01100000265618	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00440000034918.q.b.b	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37
Donkey	MODERN SPECIES	11	BRMS1L (ENSEASG00005007558)	RALGAPA1 (ENSEASG00005002495)	INSM2 (ENSEASG00005002073)	NFKBIA (ENSEASG00005002070)	PSMA6 (ENSEASG00005002068)	PRORP (ENSEASG00005002065)	PPP2R3C (ENSEASG00005002062)	FAM177A1 (ENSEASG00005002060)	SRP54 (ENSEASG00005002057)	ENSEASG00005002053	ENSEASG00005002050	ENSEASG00005001804	CFL2 (ENSEASG00005001781)	ENSEASG00005034847	ENSEASG00005009746	EAPP (ENSEASG00005026397) #22	SPTSSA (ENSEASG00005026736)	EGLN3 (ENSEASG00005028459) #23	NPAS3 (ENSEASG00005005778) #24	AKAP6 (ENSEASG00005005719) #25	ARHGAP5 (ENSEASG00005005703) #26	NUBPL (ENSEASG00005005696) #28	GPR33 (ENSEASG00005005695)	DTD2 (ENSEASG00005028650) #29	HEATR5A (ENSEASG00005003563) #30	ENSEASG00005003251	HECTD1 (ENSEASG00005002686) #31	AP4S1 (ENSEASG00005034840) #32	STRN3 (ENSEASG00005001153) #33	COCH (ENSEASG00005000969) #35	SCFD1 (ENSEASG00005000580) #37
Horse	MODERN SPECIES		MBIP (ENSECAG00000022491)	BRMS1L (ENSECAG00000013452)	RALGAPA1 (ENSECAG00000024960)	INSM2 (ENSECAG00000034097)	NFKBIA (ENSECAG00000023420)	PSMA6 (ENSECAG00000022437)	PRORP (ENSECAG00000019221)	PPP2R3C (ENSECAG00000015352)	FAM177A1 (ENSECAG00000012435)	SRP54 (ENSECAG00000018042)	ENSECAG00000015906	ENSECAG00000054257	BAZ1A (ENSECAG00000007751)	CFL2 (ENSECAG00000000511)	SNX6 (ENSECAG00000012176)	EAPP (ENSECAG00000009667) #22	SPTSSA (ENSECAG00000034886)	EGLN3 (ENSECAG00000005086) #23	NPAS3 (ENSECAG00000021888) #24	ENSECAG00000044670	AKAP6 (ENSECAG00000019940) #25	ENSECAG00000048271	ENSECAG00000046933	ARHGAP5 (ENSECAG00000017271) #26	ENSECAG00000033699	ENSECAG00000058754	NUBPL (ENSECAG00000016526) #28	GPR33 (ENSECAG00000039612)	DTD2 (ENSECAG00000016348) #29	HEATR5A (ENSECAG00000015912) #30	ENSECAG00000031422
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00510000047831	ENSGT00940000158921	ENSGT01070000257281	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00940000166226	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00940000166226	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35
Camelidae	ANCESTRAL SPECIES	41	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000163080	ENSGT00940000162733	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00940000167277	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37	ENSGT00950000182865.b.a.a
Alpaca	MODERN SPECIES	305													BAZ1A (ENSVPAG00000003274)	CFL2 (ENSVPAG00000003273)	SNX6 (ENSVPAG00000003272)	EAPP (ENSVPAG00000003271) #22
Arabian camel	MODERN SPECIES	32	NKX2-1 (ENSCDRG00005017830)	MBIP (ENSCDRG00005017739)	BRMS1L (ENSCDRG00005017695)	RALGAPA1 (ENSCDRG00005017292)	INSM2 (ENSCDRG00005017254)	NFKBIA (ENSCDRG00005017198)	PSMA6 (ENSCDRG00005017112)	PRORP (ENSCDRG00005016960)	PPP2R3C (ENSCDRG00005016852)	FAM177A1 (ENSCDRG00005016804)	SRP54 (ENSCDRG00005016645)	ENSCDRG00005016608	BAZ1A (ENSCDRG00005016142)	CFL2 (ENSCDRG00005016024)	SNX6 (ENSCDRG00005015791)	EAPP (ENSCDRG00005015710) #22	ENSCDRG00005015685	EGLN3 (ENSCDRG00005015624) #23	ENSCDRG00005015572 #24	AKAP6 (ENSCDRG00005015475) #25	ARHGAP5 (ENSCDRG00005015272) #26	NUBPL (ENSCDRG00005015152) #28	GPR33 (ENSCDRG00005015130)	DTD2 (ENSCDRG00005015091) #29	HEATR5A (ENSCDRG00005014747) #30	ENSCDRG00005014715	HECTD1 (ENSCDRG00005014317) #31	AP4S1 (ENSCDRG00005014200) #32	STRN3 (ENSCDRG00005013738) #33	COCH (ENSCDRG00005013624) #35	SCFD1 (ENSCDRG00005013449) #37
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00940000166226	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35
Cetacea	ANCESTRAL SPECIES	2	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00940000166226	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00940000166226	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35
Odontoceti_a	DUPLICATION
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332.m #22	ENSGT00390000002766.b.b	ENSGT00390000015821.h	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00940000166226	ENSGT00810000125473.B.l #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00940000178928	ENSGT00390000001332.m #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00940000166226	ENSGT00810000125473.B.l #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35
Monodontidae	ANCESTRAL SPECIES	11	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00940000178928	ENSGT00390000001332.m #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00940000166226	ENSGT00810000125473.B.l #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35
Narwhal	MODERN SPECIES	308	BRMS1L (ENSMMNG00015020339)	ENSMMNG00015020326	RALGAPA1 (ENSMMNG00015020129)	INSM2 (ENSMMNG00015020039)	NFKBIA (ENSMMNG00015020016)	PSMA6 (ENSMMNG00015019949)	PRORP (ENSMMNG00015019841)	PPP2R3C (ENSMMNG00015019785)	FAM177A1 (ENSMMNG00015019748)	SRP54 (ENSMMNG00015019691)	ENSMMNG00015019653	BAZ1A (ENSMMNG00015019553)	CFL2 (ENSMMNG00015019505)	SNX6 (ENSMMNG00015019443)	ENSMMNG00015019404	ENSMMNG00015019371 #22	SPTSSA (ENSMMNG00015019349)	EGLN3 (ENSMMNG00015019291) #23	NPAS3 (ENSMMNG00015019078) #24	AKAP6 (ENSMMNG00015018988) #25	ARHGAP5 (ENSMMNG00015018917) #26	ENSMMNG00015018891	NUBPL (ENSMMNG00015018841) #28	GPR33 (ENSMMNG00015018815)	DTD2 (ENSMMNG00015018797) #29	HEATR5A (ENSMMNG00015018679) #30	HECTD1 (ENSMMNG00015018463) #31	AP4S1 (ENSMMNG00015018404) #32	STRN3 (ENSMMNG00015018258) #33	COCH (ENSMMNG00015018104) #35	ENSMMNG00015018060
Beluga whale	MODERN SPECIES	44	NKX2-1 (ENSDLEG00000012182)	MBIP (ENSDLEG00000012196)	BRMS1L (ENSDLEG00000012215)	RALGAPA1 (ENSDLEG00000012252)	INSM2 (ENSDLEG00000012328)	NFKBIA (ENSDLEG00000012342)	PSMA6 (ENSDLEG00000012355)	ENSDLEG00000012386	PPP2R3C (ENSDLEG00000012415)	FAM177A1 (ENSDLEG00000012441)	SRP54 (ENSDLEG00000012450)	ENSDLEG00000012461	BAZ1A (ENSDLEG00000012480)	CFL2 (ENSDLEG00000012575)	SNX6 (ENSDLEG00000012585)	ENSDLEG00000012618 #22	ENSDLEG00000012640	SPTSSA (ENSDLEG00000012661)	ENSDLEG00000012666	EGLN3 (ENSDLEG00000012687) #23	NPAS3 (ENSDLEG00000012702) #24	ENSDLEG00000012728	ENSDLEG00000012743 #25	ENSDLEG00000012755 #25	ARHGAP5 (ENSDLEG00000012779) #26	ENSDLEG00000012791	NUBPL (ENSDLEG00000013432) #28	GPR33 (ENSDLEG00000013450)	DTD2 (ENSDLEG00000013452) #29	HEATR5A (ENSDLEG00000013600) #30	HECTD1 (ENSDLEG00000015830) #31
Vaquita	MODERN SPECIES	11	MBIP (ENSPSNG00000008119)	BRMS1L (ENSPSNG00000008049)	RALGAPA1 (ENSPSNG00000007885)	INSM2 (ENSPSNG00000019636)	NFKBIA (ENSPSNG00000019593)	PSMA6 (ENSPSNG00000019488)	PRORP (ENSPSNG00000019340)	PPP2R3C (ENSPSNG00000019237)	FAM177A1 (ENSPSNG00000019175)	SRP54 (ENSPSNG00000018994)	ENSPSNG00000018927	BAZ1A (ENSPSNG00000018849)	ENSPSNG00000018765	SNX6 (ENSPSNG00000018667)	ENSPSNG00000018564	ENSPSNG00000018519 #22	ENSPSNG00000018496	SPTSSA (ENSPSNG00000018482)	ENSPSNG00000018446	EGLN3 (ENSPSNG00000018355) #23	NPAS3 (ENSPSNG00000017739) #24	AKAP6 (ENSPSNG00000017615) #25	ARHGAP5 (ENSPSNG00000017472) #26	ENSPSNG00000017433	NUBPL (ENSPSNG00000017395) #28	DTD2 (ENSPSNG00000017275) #29	HEATR5A (ENSPSNG00000017090) #30	HECTD1 (ENSPSNG00000016911) #31	AP4S1 (ENSPSNG00000016811) #32	STRN3 (ENSPSNG00000016653) #33	COCH (ENSPSNG00000016321) #35
Dolphin	MODERN SPECIES	1591																EAPP (ENSTTRG00000011628) #22	SPTSSA (ENSTTRG00000011626)
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00390000001332.n #22
Odontoceti_b	ANCESTRAL SPECIES	22	ENSGT00390000008496.j.b.b.b	ENSGT00940000160782	ENSGT00940000154443.b.a	ENSGT00940000155375.c	ENSGT00390000001021	ENSGT00390000006290	ENSGT00940000163590	ENSGT00390000008856	ENSGT00940000153737.b	ENSGT00500000044890.a.a	ENSGT00940000156153	ENSGT00940000153096.b.c.a.a.b	ENSGT00510000047417.j	ENSGT00940000159616	ENSGT00940000160302	ENSGT00390000001332.n #22	ENSGT00940000158618	ENSGT00940000155009	ENSGT00940000160244	ENSGT00390000003231.b	ENSGT00530000063186.a	ENSGT00940000158538	ENSGT00940000159951.e.a.a	ENSGT00940000154631.c.a	ENSGT00940000162825	ENSGT00940000158854.i.b	ENSGT00940000165165	ENSGT00950000183442	ENSGT00530000063484.b.b	ENSGT00950000182841.b.a.a.a.d.a.a	ENSGT00940000164247
Monodontidae	ANCESTRAL SPECIES	25	ENSGT00390000008496.j.b.b.b	ENSGT00940000160782	ENSGT00940000154443.b.a	ENSGT00940000155375.c	ENSGT00390000001021	ENSGT00390000006290	ENSGT00940000163590	ENSGT00390000008856	ENSGT00940000153737.b	ENSGT00500000044890.a.a	ENSGT00940000156153	ENSGT00940000153096.b.c.a.a.b	ENSGT00510000047417.j	ENSGT00940000159616	ENSGT00940000160302	ENSGT00390000001332.n #22	ENSGT00940000158618	ENSGT00940000155009	ENSGT00940000160244	ENSGT00390000003231.b	ENSGT00530000063186.a	ENSGT00950000182841.b.a.a.a.d.a.a.d	ENSGT00940000158538	ENSGT00940000159951.e.a.a	ENSGT00940000154631.c.a	ENSGT00940000162825	ENSGT00390000009435.h.b	ENSGT00940000158854.i.b	ENSGT00940000165165	ENSGT00530000063484.b.b	ENSGT00950000182841.b.a.a.a.d.a.a.c
Narwhal	MODERN SPECIES	309	NYX (ENSMMNG00015010048)	ENSMMNG00015010041	DDX3X (ENSMMNG00015010005)	USP9X (ENSMMNG00015009970)	MED14 (ENSMMNG00015009892)	CXorf38 (ENSMMNG00015009866)	ENSMMNG00015009857	ATP6AP2 (ENSMMNG00015009785)	BCOR (ENSMMNG00015009731)	MID1IP1 (ENSMMNG00015009716)	TSPAN7 (ENSMMNG00015009703)	ENSMMNG00015009683	OTC (ENSMMNG00015009674)	RPGR (ENSMMNG00015009649)	SRPX (ENSMMNG00015009593)	ENSMMNG00015009557 #22	SYTL5 (ENSMMNG00015009525)	DYNLT3 (ENSMMNG00015009487)	CYBB (ENSMMNG00015009458)	XK (ENSMMNG00015009443)	LANCL3 (ENSMMNG00015009431)	ENSMMNG00015009412	PRRG1 (ENSMMNG00015009403)	ENSMMNG00015009377	ENSMMNG00015009347	ENSMMNG00015009340	ENSMMNG00015009333	ENSMMNG00015014787	TMEM47 (ENSMMNG00015014773)	ENSMMNG00015014766	ENSMMNG00015014749
Beluga whale	MODERN SPECIES	58	CASK (ENSDLEG00000017934)	NYX (ENSDLEG00000017648)	DDX3X (ENSDLEG00000017612)	ENSDLEG00000017591	USP9X (ENSDLEG00000014783)	MED14 (ENSDLEG00000013718)	CUNHXorf38 (ENSDLEG00000013605)	ENSDLEG00000013589	ATP6AP2 (ENSDLEG00000013556)	BCOR (ENSDLEG00000013499)	MID1IP1 (ENSDLEG00000013488)	TSPAN7 (ENSDLEG00000013478)	OTC (ENSDLEG00000013458)	RPGR (ENSDLEG00000013393)	SRPX (ENSDLEG00000013368)	ENSDLEG00000013338 #22	SYTL5 (ENSDLEG00000013025)	DYNLT3 (ENSDLEG00000012975)	XK (ENSDLEG00000012944)	LANCL3 (ENSDLEG00000012905)	ENSDLEG00000012893	ENSDLEG00000012888	ENSDLEG00000012878	ENSDLEG00000012845	ENSDLEG00000012838	PPP4R3C (ENSDLEG00000012820)	ENSDLEG00000012808
Vaquita	MODERN SPECIES	34	CASK (ENSPSNG00000015050)	ENSPSNG00000014987	NYX (ENSPSNG00000014932)	DDX3X (ENSPSNG00000014476)	USP9X (ENSPSNG00000013676)	ENSPSNG00000013458	CXorf38 (ENSPSNG00000013381)	ENSPSNG00000021202	ATP6AP2 (ENSPSNG00000021047)	BCOR (ENSPSNG00000020930)	MID1IP1 (ENSPSNG00000020892)	TSPAN7 (ENSPSNG00000020865)	OTC (ENSPSNG00000020795)	ENSPSNG00000020756	SRPX (ENSPSNG00000020642)	ENSPSNG00000020588 #22	SYTL5 (ENSPSNG00000020543)	ENSPSNG00000020516	DYNLT3 (ENSPSNG00000020495)	CYBB (ENSPSNG00000020418)	XK (ENSPSNG00000020390)	LANCL3 (ENSPSNG00000020277)	ENSPSNG00000020262	ENSPSNG00000020244	PRRG1 (ENSPSNG00000020215)	ENSPSNG00000020178	ENSPSNG00000020168	ENSPSNG00000020148	ENSPSNG00000020119	ENSPSNG00000020097	ENSPSNG00000020035
Sperm whale	MODERN SPECIES	2	MBIP (ENSPCTG00005010176)	BRMS1L (ENSPCTG00005010126)	ENSPCTG00005010040	RALGAPA1 (ENSPCTG00005009631)	INSM2 (ENSPCTG00005009574)	NFKBIA (ENSPCTG00005009454)	PSMA6 (ENSPCTG00005009278)	KIAA0391 (ENSPCTG00005009126)	PPP2R3C (ENSPCTG00005008942)	FAM177A1 (ENSPCTG00005008870)	SRP54 (ENSPCTG00005008651)	ENSPCTG00005008553	BAZ1A (ENSPCTG00005008484)	CFL2 (ENSPCTG00005008413)	SNX6 (ENSPCTG00005008297)	EAPP (ENSPCTG00005008229) #22	ENSPCTG00005008216	SPTSSA (ENSPCTG00005008208)	EGLN3 (ENSPCTG00005008171) #23	NPAS3 (ENSPCTG00005007723) #24	AKAP6 (ENSPCTG00005007589) #25	ARHGAP5 (ENSPCTG00005007494) #26	ENSPCTG00005007465	NUBPL (ENSPCTG00005007415) #28	ENSPCTG00005007388	ENSPCTG00005007379	GPR33 (ENSPCTG00005007371)	DTD2 (ENSPCTG00005007351) #29	HEATR5A (ENSPCTG00005007185) #30	ENSPCTG00005007130	HECTD1 (ENSPCTG00005007027) #31
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES	11	INSM2 (ENSBMSG00010000547)	NFKBIA (ENSBMSG00010000520)	PSMA6 (ENSBMSG00010000487)	PRORP (ENSBMSG00010000430)	PPP2R3C (ENSBMSG00010000349)	FAM177A1 (ENSBMSG00010000293)	SRP54 (ENSBMSG00010000198)	ENSBMSG00010000124	BAZ1A (ENSBMSG00010013408)	ENSBMSG00010013382	SNX6 (ENSBMSG00010013359)	ENSBMSG00010013323	ENSBMSG00010013306 #22	ENSBMSG00010013286	ENSBMSG00010013245	ENSBMSG00010013231 #22	ENSBMSG00010013221	EGLN3 (ENSBMSG00010013202) #23	NPAS3 (ENSBMSG00010013089) #24	AKAP6 (ENSBMSG00010013021) #25	ARHGAP5 (ENSBMSG00010012978) #26	NUBPL (ENSBMSG00010012964) #28	GPR33 (ENSBMSG00010012958)	DTD2 (ENSBMSG00010012949) #29	HEATR5A (ENSBMSG00010012932) #30	HECTD1 (ENSBMSG00010012906) #31	AP4S1 (ENSBMSG00010012875) #32	STRN3 (ENSBMSG00010012838) #33	COCH (ENSBMSG00010012783) #35	SCFD1 (ENSBMSG00010012723) #37	ENSBMSG00010012692
Blue whale	MODERN SPECIES	11	STRN3 (ENSBMSG00010012838) #33	AP4S1 (ENSBMSG00010012875) #32	HECTD1 (ENSBMSG00010012906) #31	HEATR5A (ENSBMSG00010012932) #30	DTD2 (ENSBMSG00010012949) #29	GPR33 (ENSBMSG00010012958)	NUBPL (ENSBMSG00010012964) #28	ARHGAP5 (ENSBMSG00010012978) #26	AKAP6 (ENSBMSG00010013021) #25	NPAS3 (ENSBMSG00010013089) #24	EGLN3 (ENSBMSG00010013202) #23	ENSBMSG00010013221	ENSBMSG00010013231 #22	ENSBMSG00010013245	ENSBMSG00010013286	ENSBMSG00010013306 #22	ENSBMSG00010013323	SNX6 (ENSBMSG00010013359)	ENSBMSG00010013382	BAZ1A (ENSBMSG00010013408)	ENSBMSG00010000124	SRP54 (ENSBMSG00010000198)	FAM177A1 (ENSBMSG00010000293)	PPP2R3C (ENSBMSG00010000349)	PRORP (ENSBMSG00010000430)	PSMA6 (ENSBMSG00010000487)	NFKBIA (ENSBMSG00010000520)	INSM2 (ENSBMSG00010000547)	ENSBMSG00010001500	BRMS1L (ENSBMSG00010001513)	ENSBMSG00010001533
Pecora	ANCESTRAL SPECIES	18	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000163541.g	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35
Yarkand deer	MODERN SPECIES	4	NKX2-1 (ENSCHYG00000008971)	MBIP (ENSCHYG00000008530)	BRMS1L (ENSCHYG00000008475)	RALGAPA1 (ENSCHYG00000007571)	INSM2 (ENSCHYG00000007476)	ENSCHYG00000007413	PRORP (ENSCHYG00000007053)	PPP2R3C (ENSCHYG00000006920)	FAM177A1 (ENSCHYG00000006869)	SRP54 (ENSCHYG00000006731)	ENSCHYG00000006663	BAZ1A (ENSCHYG00000006594)	CFL2 (ENSCHYG00000006518)	ENSCHYG00000006486	ENSCHYG00000006328	EAPP (ENSCHYG00000006243) #22	ENSCHYG00000006229	SPTSSA (ENSCHYG00000006204)	ENSCHYG00000006192	EGLN3 (ENSCHYG00000006118) #23	NPAS3 (ENSCHYG00000005548) #24	ENSCHYG00000005433 #25	ENSCHYG00000005372 #25	ENSCHYG00000005283 #26	ENSCHYG00000005261	ENSCHYG00000005213 #28	ENSCHYG00000005175	ENSCHYG00000005154 #29	ENSCHYG00000004859 #30	ENSCHYG00000004808 #31	ENSCHYG00000004784 #32
Percora_a	ANCESTRAL SPECIES	20	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000163541.g	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35
Bovidae	ANCESTRAL SPECIES	20	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000163541.g	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35
Bovinae	ANCESTRAL SPECIES	19	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a.h	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a.l.b #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00940000154690.p.b
Bos	ANCESTRAL SPECIES	18	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921.f	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a.h	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940.gb	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a.l.b #29	ENSGT00390000006205.b #30	ENSGT01100000263480.a.b.a.a.a.b.b.b.b.b.b.b.b.a.a.b.a.b.a.a.a	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35
Bos_b	ANCESTRAL SPECIES	18	ENSGT00510000047831	ENSGT00940000158921.f.b	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a.h	ENSGT00950000183010.a.b.a.a.a.a.a.b.b.i.a.b.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940.gb	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a.l.b #29	ENSGT00390000006205.b #30	ENSGT01100000263480.a.b.a.a.a.b.b.b.b.b.b.b.b.a.a.b.a.b.a.a.a	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35
Cow	MODERN SPECIES	13	BRMS1L (ENSBTAG00000018400)	RALGAPA1 (ENSBTAG00000001282)	INSM2 (ENSBTAG00000027013)	NFKBIA (ENSBTAG00000016683)	PSMA6 (ENSBTAG00000009683)	ENSBTAG00000049349	PRORP (ENSBTAG00000009682)	PPP2R3C (ENSBTAG00000009681)	FAM177A1 (ENSBTAG00000009680)	ENSBTAG00000000425	SRP54 (ENSBTAG00000019085)	ENSBTAG00000037938	BAZ1A (ENSBTAG00000020164)	CFL2 (ENSBTAG00000015053)	SNX6 (ENSBTAG00000012873)	EAPP (ENSBTAG00000003419) #22	SPTSSA (ENSBTAG00000013981)	EGLN3 (ENSBTAG00000008172) #23	NPAS3 (ENSBTAG00000004462) #24	AKAP6 (ENSBTAG00000017719) #25	ARHGAP5 (ENSBTAG00000027024) #26	ENSBTAG00000055201	NUBPL (ENSBTAG00000044121) #28	GPR33 (ENSBTAG00000010536)	ENSBTAG00000038020 #29	HEATR5A (ENSBTAG00000022847) #30	HECTD1 (ENSBTAG00000032477) #31	AP4S1 (ENSBTAG00000017201) #32	STRN3 (ENSBTAG00000021845) #33	COCH (ENSBTAG00000021844) #35	SCFD1 (ENSBTAG00000017565) #37
Hybrid Bos Indicus	MODERN SPECIES	13	MBIP (ENSBIXG00005026348)	ENSBIXG00005026403	RALGAPA1 (ENSBIXG00005026523)	INSM2 (ENSBIXG00005026558)	NFKBIA (ENSBIXG00005026599)	PSMA6 (ENSBIXG00005004554)	PRORP (ENSBIXG00005026751)	PPP2R3C (ENSBIXG00005026776)	ENSBIXG00005026804	ENSBIXG00005004583	SRP54 (ENSBIXG00005004590)	ENSBIXG00005004603	BAZ1A (ENSBIXG00005026976)	CFL2 (ENSBIXG00005004635)	SNX6 (ENSBIXG00005027072)	EAPP (ENSBIXG00005027140) #22	ENSBIXG00005027146	SPTSSA (ENSBIXG00005027156)	EGLN3 (ENSBIXG00005004670) #23	NPAS3 (ENSBIXG00005004743) #24	ENSBIXG00005027635	AKAP6 (ENSBIXG00005004751) #25	ARHGAP5 (ENSBIXG00005027783) #26	ENSBIXG00005027817	ENSBIXG00005004787	NUBPL (ENSBIXG00005027931) #28	GPR33 (ENSBIXG00005027980)	ENSBIXG00005027995 #29	HEATR5A (ENSBIXG00005028101) #30	ENSBIXG00005028130	HECTD1 (ENSBIXG00005028215) #31
Bos_a	ANCESTRAL SPECIES	10	ENSGT00510000047831	ENSGT00940000158921.f	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a.h	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940.gb	ENSGT00940000154940.fb.a	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT00940000153431.a.l.b #29	ENSGT00390000006205.b #30	ENSGT01100000263480.a.b.a.a.a.b.b.b.b.b.b.b.b.a.a.b.a.b.a.a.a	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00940000154690.p.b
Wild yak	MODERN SPECIES	2722															ENSBMUG00000004626	EAPP (ENSBMUG00000004570) #22	ENSBMUG00000004548	SPTSSA (ENSBMUG00000004541)
Domestic yak	MODERN SPECIES	8	ENSBGRG00000013838	RALGAPA1 (ENSBGRG00000012142)	INSM2 (ENSBGRG00000012041)	ENSBGRG00000011907	PSMA6 (ENSBGRG00000011146)	PRORP (ENSBGRG00000010633)	PPP2R3C (ENSBGRG00000010465)	ENSBGRG00000010370	FAM177A1 (ENSBGRG00000010282)	SRP54 (ENSBGRG00000009974)	ENSBGRG00000009920	BAZ1A (ENSBGRG00000009766)	ENSBGRG00000009716	SNX6 (ENSBGRG00000009511)	CFL2 (ENSBGRG00000009349)	EAPP (ENSBGRG00000009269) #22	SPTSSA (ENSBGRG00000009176)	EGLN3 (ENSBGRG00000009029) #23	ENSBGRG00000009008	NPAS3 (ENSBGRG00000008650) #24	AKAP6 (ENSBGRG00000008525) #25	ARHGAP5 (ENSBGRG00000008406) #26	ENSBGRG00000008358	ENSBGRG00000008307	NUBPL (ENSBGRG00000008223) #28	DTD2 (ENSBGRG00000008143) #29	HEATR5A (ENSBGRG00000007992) #30	ENSBGRG00000007953	HECTD1 (ENSBGRG00000007751) #31	AP4S1 (ENSBGRG00000007586) #32	STRN3 (ENSBGRG00000007105) #33
American bison	MODERN SPECIES	2979	PAX9 (ENSBBBG00000009458)	MBIP (ENSBBBG00000009469)	BRMS1L (ENSBBBG00000001516)	RALGAPA1 (ENSBBBG00000009495)	INSM2 (ENSBBBG00000001523)	NFKBIA (ENSBBBG00000009508)	PSMA6 (ENSBBBG00000009515)	PRORP (ENSBBBG00000009525)	PPP2R3C (ENSBBBG00000009534)	ENSBBBG00000009538	SRP54 (ENSBBBG00000009551)	ENSBBBG00000007487	BAZ1A (ENSBBBG00000009578)	CFL2 (ENSBBBG00000009594)	SNX6 (ENSBBBG00000009605)	EAPP (ENSBBBG00000009619) #22	EGLN3 (ENSBBBG00000009629) #23
Caprinae	ANCESTRAL SPECIES	22	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000163541.g	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35
Goat	MODERN SPECIES	13	ENSCHIG00000008222	ENSCHIG00000011615	BRMS1L (ENSCHIG00000016496)	RALGAPA1 (ENSCHIG00000021528)	INSM2 (ENSCHIG00000019716)	NFKBIA (ENSCHIG00000010157)	PSMA6 (ENSCHIG00000020801)	PRORP (ENSCHIG00000026248)	PPP2R3C (ENSCHIG00000015062)	FAM177A1 (ENSCHIG00000026400)	SRP54 (ENSCHIG00000026345)	ENSCHIG00000023755	BAZ1A (ENSCHIG00000019365)	CFL2 (ENSCHIG00000015758)	ENSCHIG00000017907	EAPP (ENSCHIG00000022171) #22	ENSCHIG00000016213	ENSCHIG00000008804	ENSCHIG00000021678	EGLN3 (ENSCHIG00000016948) #23	NPAS3 (ENSCHIG00000019397) #24	AKAP6 (ENSCHIG00000024298) #25	ARHGAP5 (ENSCHIG00000010874) #26	NUBPL (ENSCHIG00000006710) #28	GPR33 (ENSCHIG00000007857)	ENSCHIG00000011637 #29	HEATR5A (ENSCHIG00000010796) #30	HECTD1 (ENSCHIG00000018114) #31	AP4S1 (ENSCHIG00000016142) #32	STRN3 (ENSCHIG00000019005) #33	COCH (ENSCHIG00000007305) #35
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	9	CLEC14A (ENSOARG00020011752)	SSTR1 (ENSOARG00020011703)	ENSOARG00020011587	ENSOARG00020011571	FOXA1 (ENSOARG00020011508)	MIPOL1 (ENSOARG00020011197)	SLC25A21 (ENSOARG00020010778)	PAX9 (ENSOARG00020010673)	NKX2-8 (ENSOARG00020010624)	NKX2-1 (ENSOARG00020010481)	MBIP (ENSOARG00020010152)	ENSOARG00020010080	BRMS1L (ENSOARG00020009991)	RALGAPA1 (ENSOARG00020007640)	INSM2 (ENSOARG00020007546)	ENSOARG00020007449 #22	NFKBIA (ENSOARG00020007336)	PSMA6 (ENSOARG00020006992)	PPP2R3C (ENSOARG00020006825)	FAM177A1 (ENSOARG00020006769)	SRP54 (ENSOARG00020006524)	ENSOARG00020006421	BAZ1A (ENSOARG00020006340)	CFL2 (ENSOARG00020006245)	SNX6 (ENSOARG00020005948)	ENSOARG00020005839 #22	ENSOARG00020005825	EGLN3 (ENSOARG00020005770) #23	NPAS3 (ENSOARG00020005668) #24	AKAP6 (ENSOARG00020005604) #25	ARHGAP5 (ENSOARG00020005438) #26
Rambouillet Sheep	MODERN SPECIES	9	MBIP (ENSOARG00020010152)	ENSOARG00020010080	BRMS1L (ENSOARG00020009991)	RALGAPA1 (ENSOARG00020007640)	INSM2 (ENSOARG00020007546)	ENSOARG00020007449 #22	NFKBIA (ENSOARG00020007336)	PSMA6 (ENSOARG00020006992)	PPP2R3C (ENSOARG00020006825)	FAM177A1 (ENSOARG00020006769)	SRP54 (ENSOARG00020006524)	ENSOARG00020006421	BAZ1A (ENSOARG00020006340)	CFL2 (ENSOARG00020006245)	SNX6 (ENSOARG00020005948)	ENSOARG00020005839 #22	ENSOARG00020005825	EGLN3 (ENSOARG00020005770) #23	NPAS3 (ENSOARG00020005668) #24	AKAP6 (ENSOARG00020005604) #25	ARHGAP5 (ENSOARG00020005438) #26	ENSOARG00020005406	NUBPL (ENSOARG00020005362) #28	GPR33 (ENSOARG00020005349)	DTD2 (ENSOARG00020005329) #29	HEATR5A (ENSOARG00020005213) #30	HECTD1 (ENSOARG00020005016) #31	AP4S1 (ENSOARG00020004957) #32	STRN3 (ENSOARG00020004854) #33	COCH (ENSOARG00020004770) #35	SCFD1 (ENSOARG00020004656) #37
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	138	ENSMMSG00000019426	LMLN (ENSMMSG00000019182)	OSBPL11 (ENSMMSG00000019129)	ENSMMSG00000019084	SNX4 (ENSMMSG00000019042)	ZNF148 (ENSMMSG00000018980)	SLC12A8 (ENSMMSG00000018899)	HEG1 (ENSMMSG00000018772)	ENSMMSG00000018667	ITGB5 (ENSMMSG00000018600)	UMPS (ENSMMSG00000018563)	KALRN (ENSMMSG00000017294)	ENSMMSG00000017181	ENSMMSG00000017146	CCDC14 (ENSMMSG00000017046)	ENSMMSG00000017003 #22	MYLK (ENSMMSG00000016805)	HACD2 (ENSMMSG00000016733)	ADCY5 (ENSMMSG00000016606)	SEC22A (ENSMMSG00000016529)	PDIA5 (ENSMMSG00000016449)	SEMA5B (ENSMMSG00000016391)	SLC49A4 (ENSMMSG00000016322)	HSPBAP1 (ENSMMSG00000016268)	PARP14 (ENSMMSG00000016234)	DTX3L (ENSMMSG00000016186)	PARP9 (ENSMMSG00000016081)	KPNA1 (ENSMMSG00000016044)	WDR5B (ENSMMSG00000016033)	ENSMMSG00000016018	FAM162A (ENSMMSG00000015960)
Siberian musk deer	MODERN SPECIES	392	BRMS1L (ENSMMSG00000015961)	RALGAPA1 (ENSMMSG00000016068)	INSM2 (ENSMMSG00000016329)	ENSMMSG00000016348	PSMA6 (ENSMMSG00000016417)	PRORP (ENSMMSG00000015820)	PPP2R3C (ENSMMSG00000015971)	FAM177A1 (ENSMMSG00000016070)	ENSMMSG00000016102	SRP54 (ENSMMSG00000016134)	ENSMMSG00000016259	BAZ1A (ENSMMSG00000016300)	CFL2 (ENSMMSG00000016590)	ENSMMSG00000016650	SNX6 (ENSMMSG00000016683)	ENSMMSG00000016793 #22	SPTSSA (ENSMMSG00000016814)	ENSMMSG00000016824	EGLN3 (ENSMMSG00000016837) #23	NPAS3 (ENSMMSG00000016904) #24	AKAP6 (ENSMMSG00000017405) #25	ARHGAP5 (ENSMMSG00000017499) #26	NUBPL (ENSMMSG00000017580) #28
Suina	ANCESTRAL SPECIES	30	ENSGT00510000047831	ENSGT00940000158921	ENSGT01070000257281	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37
Pig	MODERN SPECIES	15	ENSSSCG00000044591	BRMS1L (ENSSSCG00000001947)	RALGAPA1 (ENSSSCG00000032377)	ENSSSCG00000047970	INSM2 (ENSSSCG00000001949)	NFKBIA (ENSSSCG00000001952)	PSMA6 (ENSSSCG00000054516)	PRORP (ENSSSCG00000001950)	PPP2R3C (ENSSSCG00000031498)	FAM177A1 (ENSSSCG00000034753)	SRP54 (ENSSSCG00000001955)	ENSSSCG00000062223	BAZ1A (ENSSSCG00000001958)	CFL2 (ENSSSCG00000001959)	SNX6 (ENSSSCG00000040912)	EAPP (ENSSSCG00000001960) #22	SPTSSA (ENSSSCG00000060304)	EGLN3 (ENSSSCG00000001963) #23	ENSSSCG00000036652	NPAS3 (ENSSSCG00000001964) #24	AKAP6 (ENSSSCG00000024517) #25	ARHGAP5 (ENSSSCG00000001966) #26	NUBPL (ENSSSCG00000001968) #28	ENSSSCG00000044304	GPR33 (ENSSSCG00000025131)	DTD2 (ENSSSCG00000026663) #29	ENSSSCG00000061987 #30	ENSSSCG00000001970 #30	HECTD1 (ENSSSCG00000001971) #31	AP4S1 (ENSSSCG00000001972) #32	STRN3 (ENSSSCG00000040657) #33
Chacoan peccary	MODERN SPECIES	883	NKX2-1 (ENSCWAG00000021794)	MBIP (ENSCWAG00000021783)	BRMS1L (ENSCWAG00000021744)	RALGAPA1 (ENSCWAG00000021428)	INSM2 (ENSCWAG00000021348)	NFKBIA (ENSCWAG00000021339)	PSMA6 (ENSCWAG00000021327)	PRORP (ENSCWAG00000021308)	PPP2R3C (ENSCWAG00000021289)	FAM177A1 (ENSCWAG00000021278)	SRP54 (ENSCWAG00000021240)	ENSCWAG00000021220	BAZ1A (ENSCWAG00000021194)	CFL2 (ENSCWAG00000021171)	SNX6 (ENSCWAG00000021128)	EAPP (ENSCWAG00000021095) #22	SPTSSA (ENSCWAG00000021089)	EGLN3 (ENSCWAG00000021081) #23	NPAS3 (ENSCWAG00000020800) #24	AKAP6 (ENSCWAG00000020720) #25	ARHGAP5 (ENSCWAG00000020683) #26	NUBPL (ENSCWAG00000020665) #28	GPR33 (ENSCWAG00000020655)	DTD2 (ENSCWAG00000020644) #29	HEATR5A (ENSCWAG00000020563) #30	HECTD1 (ENSCWAG00000020463) #31	AP4S1 (ENSCWAG00000020431) #32	STRN3 (ENSCWAG00000020364) #33	COCH (ENSCWAG00000020293) #35	SCFD1 (ENSCWAG00000020229) #37	G2E3 (ENSCWAG00000020142)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000001332 #22
Hedgehog	MODERN SPECIES	2707																EAPP (ENSEEUG00000011775) #22
Common shrew	MODERN SPECIES	2011																EAPP (ENSSARG00000000229) #22
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT01070000257281	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000166431	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00940000158921	ENSGT01070000257281	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000166431	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37
Tree shrew	MODERN SPECIES	5642														ENSTBEG00000001431	ENSTBEG00000001424	EAPP (ENSTBEG00000001306) #22
Glires	ANCESTRAL SPECIES	12	ENSGT00940000158921	ENSGT01070000257281	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000166431	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37
Lagomorpha	ANCESTRAL SPECIES	14	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00940000167277	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37	ENSGT00950000182865.b.a.a
Rabbit	MODERN SPECIES	8	BRMS1L (ENSOCUG00000006825)	ENSOCUG00000029888	RALGAPA1 (ENSOCUG00000006807)	INSM2 (ENSOCUG00000006804)	NFKBIA (ENSOCUG00000015642)	PSMA6 (ENSOCUG00000015635)	PRORP (ENSOCUG00000016663)	PPP2R3C (ENSOCUG00000005768)	FAM177A1 (ENSOCUG00000005763)	SRP54 (ENSOCUG00000007838)	ENSOCUG00000022589	BAZ1A (ENSOCUG00000012593)	CFL2 (ENSOCUG00000009383)	ENSOCUG00000027099	SNX6 (ENSOCUG00000029421)	EAPP (ENSOCUG00000003226) #22	ENSOCUG00000024362	ENSOCUG00000008560 #23	NPAS3 (ENSOCUG00000010632) #24	AKAP6 (ENSOCUG00000014205) #25	ENSOCUG00000025739	ARHGAP5 (ENSOCUG00000010548) #26	NUBPL (ENSOCUG00000017713) #28	GPR33 (ENSOCUG00000022411)	DTD2 (ENSOCUG00000007778) #29	ENSOCUG00000027034	HEATR5A (ENSOCUG00000007228) #30	ENSOCUG00000002021	HECTD1 (ENSOCUG00000003816) #31	AP4S1 (ENSOCUG00000011430) #32	STRN3 (ENSOCUG00000011418) #33
Rodentia	ANCESTRAL SPECIES	3	ENSGT00940000158921	ENSGT01070000257281	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000163080	ENSGT00550000074807.d.t	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00940000158921	ENSGT01070000257281	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d.t.j	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37
Sciuridae	ANCESTRAL SPECIES	8	ENSGT00940000158921	ENSGT01070000257281	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d.t.j	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37
Marmotini	ANCESTRAL SPECIES	15	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000163080	ENSGT00550000074807.d.s.a	ENSGT00940000162733	ENSGT00550000074807.d.t.j	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37
Marmotini_b	ANCESTRAL SPECIES	108	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d.t.j	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37	ENSGT00950000182865.b.a.a
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	354	ZFAND2A (ENSSTOG00000003030)	GPER1 (ENSSTOG00000034461)	ENSSTOG00000031759	GPR146 (ENSSTOG00000030630)	C7orf50 (ENSSTOG00000027588)	CYP2W1 (ENSSTOG00000003002)	COX19 (ENSSTOG00000032354)	ADAP1 (ENSSTOG00000024349)	GET4 (ENSSTOG00000003934)	SUN1 (ENSSTOG00000003895)	DNAAF5 (ENSSTOG00000003874)	PRKAR1B (ENSSTOG00000003855)	PDGFA (ENSSTOG00000003223)	FAM20C (ENSSTOG00000019720)	ENSSTOG00000034676	ENSSTOG00000024440 #22
Squirrel	MODERN SPECIES	94	BRMS1L (ENSSTOG00000026072)	RALGAPA1 (ENSSTOG00000001249)	INSM2 (ENSSTOG00000026540)	NFKBIA (ENSSTOG00000007587)	ENSSTOG00000011774	ENSSTOG00000023566	ENSSTOG00000011766	PPP2R3C (ENSSTOG00000009212)	FAM177A1 (ENSSTOG00000016027)	SRP54 (ENSSTOG00000016023)	ENSSTOG00000024975	ENSSTOG00000027145	BAZ1A (ENSSTOG00000012204)	ENSSTOG00000001675	SNX6 (ENSSTOG00000030590)	ENSSTOG00000005273 #22	SPTSSA (ENSSTOG00000025158)	EGLN3 (ENSSTOG00000027368) #23	NPAS3 (ENSSTOG00000014736) #24	AKAP6 (ENSSTOG00000024157) #25	ARHGAP5 (ENSSTOG00000020291) #26	NUBPL (ENSSTOG00000004688) #28	GPR33 (ENSSTOG00000027164)	ENSSTOG00000025562 #29	HEATR5A (ENSSTOG00000004620) #30	HECTD1 (ENSSTOG00000023965) #31	ENSSTOG00000010759 #32	STRN3 (ENSSTOG00000010749) #33	COCH (ENSSTOG00000000556) #35	SCFD1 (ENSSTOG00000008939) #37	G2E3 (ENSSTOG00000008924)
Arctic ground squirrel	MODERN SPECIES	18	MBIP (ENSUPAG00010000502)	ENSUPAG00010000520	RALGAPA1 (ENSUPAG00010000544)	INSM2 (ENSUPAG00010001161)	NFKBIA (ENSUPAG00010001173)	PSMA6 (ENSUPAG00010001196)	PRORP (ENSUPAG00010001241)	ENSUPAG00010001286	PPP2R3C (ENSUPAG00010001303)	FAM177A1 (ENSUPAG00010001644)	SRP54 (ENSUPAG00010001653)	ENSUPAG00010001684	BAZ1A (ENSUPAG00010001722)	ENSUPAG00010001776	SNX6 (ENSUPAG00010001786)	EAPP (ENSUPAG00010001833) #22	ENSUPAG00010001845	SPTSSA (ENSUPAG00010001850)	EGLN3 (ENSUPAG00010001862) #23	NPAS3 (ENSUPAG00010001878) #24	ENSUPAG00010001945	AKAP6 (ENSUPAG00010001952) #25	ARHGAP5 (ENSUPAG00010001993) #26	NUBPL (ENSUPAG00010002012) #28	GPR33 (ENSUPAG00010002026)	ENSUPAG00010002029 #29	HEATR5A (ENSUPAG00010002104) #30	HECTD1 (ENSUPAG00010012181) #31	AP4S1 (ENSUPAG00010012317) #32	STRN3 (ENSUPAG00010012325) #33	COCH (ENSUPAG00010012392) #35
Alpin marmot	MODERN SPECIES	1	ENSMMMG00000005857	BRMS1L (ENSMMMG00000005865)	RALGAPA1 (ENSMMMG00000005888)	INSM2 (ENSMMMG00000006417)	ENSMMMG00000006428	PSMA6 (ENSMMMG00000006439)	PRORP (ENSMMMG00000006469)	ENSMMMG00000006558	FAM177A1 (ENSMMMG00000006572)	SRP54 (ENSMMMG00000006580)	ENSMMMG00000006634	BAZ1A (ENSMMMG00000006696)	ENSMMMG00000006731	ENSMMMG00000006738	ENSMMMG00000006742	EAPP (ENSMMMG00000006761) #22	ENSMMMG00000006766	SPTSSA (ENSMMMG00000006776)	EGLN3 (ENSMMMG00000006788) #23	ENSMMMG00000006799 #24	ENSMMMG00000006834 #25	ARHGAP5 (ENSMMMG00000006856) #26	ENSMMMG00000006876	NUBPL (ENSMMMG00000006890) #28	GPR33 (ENSMMMG00000006908)	DTD2 (ENSMMMG00000006910) #29	HEATR5A (ENSMMMG00000006921) #30	HECTD1 (ENSMMMG00000006978) #31	AP4S1 (ENSMMMG00000007043) #32	STRN3 (ENSMMMG00000007068) #33	COCH (ENSMMMG00000009368) #35
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	11	RALGAPA1 (ENSSVLG00005001913)	INSM2 (ENSSVLG00005002423)	NFKBIA (ENSSVLG00005002436)	PSMA6 (ENSSVLG00005002482)	PRORP (ENSSVLG00005002581)	PPP2R3C (ENSSVLG00005002629)	FAM177A1 (ENSSVLG00005002647)	ENSSVLG00005002666	ENSSVLG00005002677	SRP54 (ENSSVLG00005002707)	ENSSVLG00005002806	BAZ1A (ENSSVLG00005002845)	ENSSVLG00005002890	ENSSVLG00005002935	ENSSVLG00005003024	ENSSVLG00005003042 #22	ENSSVLG00005003053	ENSSVLG00005003068	ENSSVLG00005003086	ENSSVLG00005003092	EGLN3 (ENSSVLG00005003108) #23	NPAS3 (ENSSVLG00005003199) #24	AKAP6 (ENSSVLG00005003395) #25	ARHGAP5 (ENSSVLG00005003448) #26	NUBPL (ENSSVLG00005003491) #28	GPR33 (ENSSVLG00005003516)	DTD2 (ENSSVLG00005003527) #29	HEATR5A (ENSSVLG00005003550) #30	HECTD1 (ENSSVLG00005003644) #31	AP4S1 (ENSSVLG00005003726) #32	STRN3 (ENSSVLG00005003765) #33
Eurasian red squirrel	MODERN SPECIES	5	ENSSVLG00005021243	ENSSVLG00005021277	SLC1A4 (ENSSVLG00005021330)	SERTAD2 (ENSSVLG00005021387)	ENSSVLG00005021416	LGALSL (ENSSVLG00005021478)	PELI1 (ENSSVLG00005021561)	VPS54 (ENSSVLG00005021631)	UGP2 (ENSSVLG00005021917)	MDH1 (ENSSVLG00005022103)	WDPCP (ENSSVLG00005022261)	OTX1 (ENSSVLG00005022587)	EHBP1 (ENSSVLG00005022645)	TMEM17 (ENSSVLG00005022771)	B3GNT2 (ENSSVLG00005022804)	ENSSVLG00005022821 #22	ENSSVLG00005022859	CRIPT (ENSSVLG00005022896)	CCT4 (ENSSVLG00005022942)	FAM161A (ENSSVLG00005023008)	ENSSVLG00005023092	ENSSVLG00005023117	ENSSVLG00005023491	XPO1 (ENSSVLG00005023207)	USP34 (ENSSVLG00005023531)	ENSSVLG00005023593	ENSSVLG00005023624	ENSSVLG00005023655	C2orf74 (ENSSVLG00005023693)	ENSSVLG00005023730	SANBR (ENSSVLG00005023769)
Hystricomorpha	ANCESTRAL SPECIES	15	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d.t.j	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00950000182957.a.a.b	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37
Naked mole-rat female	MODERN SPECIES	11	ENSHGLG00000000299	ENSHGLG00000000511	RALGAPA1 (ENSHGLG00000001193)	INSM2 (ENSHGLG00000049957)	NFKBIA (ENSHGLG00000034266)	ENSHGLG00000000520	PRORP (ENSHGLG00000001372)	ENSHGLG00000002301	FAM177A1 (ENSHGLG00000045828)	SRP54 (ENSHGLG00000002850)	ENSHGLG00000000845	BAZ1A (ENSHGLG00000007236)	ENSHGLG00000047884	CFL2 (ENSHGLG00000001467)	SNX6 (ENSHGLG00000002236)	EAPP (ENSHGLG00000035378) #22	ENSHGLG00000046910	ENSHGLG00000002049	ENSHGLG00000032861	ENSHGLG00000001381 #23	ENSHGLG00000001684	ENSHGLG00000000723 #24	ENSHGLG00000045174	ENSHGLG00000001019	ENSHGLG00000001333 #25	ENSHGLG00000050257	ENSHGLG00000036198	ENSHGLG00000048569	ENSHGLG00000050973	ENSHGLG00000003356 #26	ENSHGLG00000043700
Hystricomorpha_a	ANCESTRAL SPECIES	18	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d.t.j	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00950000182957.a.a.b	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37
Guinea pig	DUPLICATION
Guinea pig	MODERN SPECIES	23	MBIP (ENSCPOG00000004648)	BRMS1L (ENSCPOG00000031299)	RALGAPA1 (ENSCPOG00000013938)	INSM2 (ENSCPOG00000013937)	NFKBIA (ENSCPOG00000005455)	PSMA6 (ENSCPOG00000003107)	PRORP (ENSCPOG00000004789)	PPP2R3C (ENSCPOG00000004781)	FAM177A1 (ENSCPOG00000035599)	SRP54 (ENSCPOG00000003691)	ENSCPOG00000026661	ENSCPOG00000039496	BAZ1A (ENSCPOG00000011951)	CFL2 (ENSCPOG00000033162)	SNX6 (ENSCPOG00000006862)	ENSCPOG00000003005 #22	SPTSSA (ENSCPOG00000038925)	EGLN3 (ENSCPOG00000013369) #23	ENSCPOG00000014222	NPAS3 (ENSCPOG00000006976) #24	AKAP6 (ENSCPOG00000007031) #25
Guinea pig	MODERN SPECIES	32	RNF32 (ENSCPOG00000012026)	SHH (ENSCPOG00000023638)	RBM33 (ENSCPOG00000011852)	ENSCPOG00000009846	EN2 (ENSCPOG00000024572)	INSIG1 (ENSCPOG00000014739)	HTR5A (ENSCPOG00000007970)	PAXIP1 (ENSCPOG00000001303)	DPP6 (ENSCPOG00000003511)	ENSCPOG00000003695	XRCC2 (ENSCPOG00000012263)	CCT8L2 (ENSCPOG00000020546)	KMT2C (ENSCPOG00000001857)	GALNT11 (ENSCPOG00000005174)	GALNTL5 (ENSCPOG00000005168)	ENSCPOG00000022472 #22	PRKAG2 (ENSCPOG00000015691)	RHEB (ENSCPOG00000031743)	Crygn (ENSCPOG00000005218)	WDR86 (ENSCPOG00000026626)	NUB1 (ENSCPOG00000012070)	SMARCD3 (ENSCPOG00000020971)	CHPF2 (ENSCPOG00000033035)	ABCF2 (ENSCPOG00000008379)	IQCA1L (ENSCPOG00000006528)	ASB10 (ENSCPOG00000007315)	GBX1 (ENSCPOG00000011349)	AGAP3 (ENSCPOG00000004084)	TMUB1 (ENSCPOG00000032741)	FASTK (ENSCPOG00000037276)	SLC4A2 (ENSCPOG00000013226)
Hystricomorpha_b	ANCESTRAL SPECIES	18	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d.t.j	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00950000182957.a.a.b	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37
Long-tailed chinchilla	MODERN SPECIES	116	NKX2-1 (ENSCLAG00000011429)	MBIP (ENSCLAG00000010075)	BRMS1L (ENSCLAG00000009601)	RALGAPA1 (ENSCLAG00000009050)	INSM2 (ENSCLAG00000011235)	NFKBIA (ENSCLAG00000011667)	PSMA6 (ENSCLAG00000012840)	PRORP (ENSCLAG00000012615)	ENSCLAG00000014794	FAM177A1 (ENSCLAG00000015226)	SRP54 (ENSCLAG00000015076)	ENSCLAG00000012880	BAZ1A (ENSCLAG00000015173)	ENSCLAG00000012876	SNX6 (ENSCLAG00000012353)	EAPP (ENSCLAG00000013007) #22	ENSCLAG00000012005	EGLN3 (ENSCLAG00000010720) #23	ENSCLAG00000011029	NPAS3 (ENSCLAG00000013939) #24	AKAP6 (ENSCLAG00000013553) #25	ARHGAP5 (ENSCLAG00000015975) #26	NUBPL (ENSCLAG00000011929) #28	GPR33 (ENSCLAG00000013344)	DTD2 (ENSCLAG00000014737) #29	HEATR5A (ENSCLAG00000009555) #30	HECTD1 (ENSCLAG00000011096) #31	ENSCLAG00000009036 #32	ENSCLAG00000011538 #33	COCH (ENSCLAG00000011067) #35	SCFD1 (ENSCLAG00000012279) #37
Degu	DUPLICATION
Degu	MODERN SPECIES	83													ENSODEG00000007841	ENSODEG00000009188	WNT8B (ENSODEG00000006011)	ENSODEG00000005730 #22	NDUFB8 (ENSODEG00000006621)	ENSODEG00000007007	PAX2 (ENSODEG00000006975)	SLF2 (ENSODEG00000008647)	SEMA4G (ENSODEG00000005984)	ENSODEG00000006668	TWNK (ENSODEG00000006072)	LZTS2 (ENSODEG00000006752)	PDZD7 (ENSODEG00000006718)	SFXN3 (ENSODEG00000007542)	KAZALD1 (ENSODEG00000005804)	ENSODEG00000006094	LBX1 (ENSODEG00000006684)	BTRC (ENSODEG00000008464)	POLL (ENSODEG00000007469)
Degu	MODERN SPECIES	108								ENSODEG00000010363	ENSODEG00000011399	PTPN5 (ENSODEG00000011115)	TMEM86A (ENSODEG00000012064)	ENSODEG00000019868	ENSODEG00000010606	ENSODEG00000009912	SPTY2D1 (ENSODEG00000011157)	ENSODEG00000010073 #22	ENSODEG00000009385	TSG101 (ENSODEG00000011046)	ENSODEG00000010760	ENSODEG00000010324	ENSODEG00000009666	ENSODEG00000019665	ENSODEG00000010218	ENSODEG00000009884	ENSODEG00000009628	ENSODEG00000009541	ENSODEG00000009128	SAAL1 (ENSODEG00000013515)	TPH1 (ENSODEG00000009357)	KCNC1 (ENSODEG00000009078)	MYOD1 (ENSODEG00000009827)
Rodentia_B	ANCESTRAL SPECIES	7	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000163080	ENSGT00550000074807.d.t	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37	ENSGT00950000182865.b.a.a
Kangaroo rat	MODERN SPECIES	335	Pax9 (ENSDORG00000028039)	Nkx2-1 (ENSDORG00000023229)	Mbip (ENSDORG00000000347)	ENSDORG00000024326	ENSDORG00000027989	Brms1l (ENSDORG00000005811)	Ralgapa1 (ENSDORG00000001812)	ENSDORG00000012862	Psma6 (ENSDORG00000010060)	ENSDORG00000010059	ENSDORG00000026400	ENSDORG00000005159	Baz1a (ENSDORG00000008833)	Cfl2 (ENSDORG00000006039)	Snx6 (ENSDORG00000007000)	Eapp (ENSDORG00000010166) #22	Sptssa (ENSDORG00000030126)	Egln3 (ENSDORG00000014235) #23
Myomorpha	ANCESTRAL SPECIES	7	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000163080	ENSGT00550000074807.d.t	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37	ENSGT00950000182865.b.a.a
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	86																ENSJJAG00000015801 #22	Sptssa (ENSJJAG00000014413)	ENSJJAG00000003660	Egln3 (ENSJJAG00000013045) #23	Arhgap5 (ENSJJAG00000022832) #26	ENSJJAG00000019398	ENSJJAG00000015737 #29	Heatr5a (ENSJJAG00000019420) #30	Hectd1 (ENSJJAG00000001344) #31	Ap4s1 (ENSJJAG00000022804) #32	Strn3 (ENSJJAG00000019703) #33	Coch (ENSJJAG00000019025) #35	G2e3 (ENSJJAG00000014439)	ENSJJAG00000001269	ENSJJAG00000001174	Nova1 (ENSJJAG00000012915)
Lesser Egyptian jerboa	MODERN SPECIES	184			ENSJJAG00000019460	Rnase10 (ENSJJAG00000019054)	ENSJJAG00000018453	Pip4p1 (ENSJJAG00000012864)	ENSJJAG00000012067	Osgep (ENSJJAG00000010067)	ENSJJAG00000007593	Klhl33 (ENSJJAG00000002330)	Tep1 (ENSJJAG00000000067)	Parp2 (ENSJJAG00000006912)	ENSJJAG00000000726	ENSJJAG00000012265	Ttc5 (ENSJJAG00000000234)	ENSJJAG00000020853 #22	ENSJJAG00000012244	Or4k1 (ENSJJAG00000012249)	Or4m1 (ENSJJAG00000012228)	ENSJJAG00000012234	ENSJJAG00000012206	ENSJJAG00000019743	Or4n5 (ENSJJAG00000023766)	Slc30a4 (ENSJJAG00000022834)	ENSJJAG00000022498	Sqor (ENSJJAG00000022157)	ENSJJAG00000020506	ENSJJAG00000012383	ENSJJAG00000012377	ENSJJAG00000020214	Sema6d (ENSJJAG00000017228)
Muroidea	ANCESTRAL SPECIES	54	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000163080	ENSGT00940000162733	ENSGT00550000074807.d.t	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37	ENSGT00950000182865.b.a.a
Upper Galilee mountains blind mole rat	MODERN SPECIES	351															ENSNGAG00000005761 #29	Eapp (ENSNGAG00000015838) #22	Sptssa (ENSNGAG00000005131)
Muroidea_A	ANCESTRAL SPECIES	15	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00950000182987.c.a.a.o.a	ENSGT00940000162733	ENSGT00550000074807.d.t	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37	ENSGT00950000182865.b.a.a
Murinae	ANCESTRAL SPECIES	8	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00950000182987.c.a.a.o.a	ENSGT00940000162733	ENSGT00550000074807.d.t	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37	ENSGT00950000182865.b.a.a
Mus	ANCESTRAL SPECIES	10	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00950000182987.c.a.a.o.a	ENSGT00940000162733	ENSGT00550000074807.d.t	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37	ENSGT00950000182865.b.a.a
Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00950000182987.c.a.a.o.a	ENSGT00940000162733	ENSGT00550000074807.d.t	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37	ENSGT00950000182865.b.a.a
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00950000182987.c.a.a.o.a	ENSGT00940000162733	ENSGT00550000074807.d.t	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a.d	ENSGT00550000074824	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37	ENSGT00950000182865.b.a.a
Mus_C	ANCESTRAL SPECIES	11	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00950000182987.c.a.a.o.a	ENSGT00940000162733	ENSGT00550000074807.d.t	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37	ENSGT00950000182865.b.a.a
spretus	MODERN SPECIES	3	Brms1l (MGP_SPRETEiJ_G0018609)	MGP_SPRETEiJ_G0018608	Insm2 (MGP_SPRETEiJ_G0018607)	Aldoart2 (MGP_SPRETEiJ_G0018606)	Nfkbia (MGP_SPRETEiJ_G0018605)	Psma6 (MGP_SPRETEiJ_G0018604)	MGP_SPRETEiJ_G0018603	Fam177a2 (MGP_SPRETEiJ_G0018602)	Fam177a (MGP_SPRETEiJ_G0018601)	MGP_SPRETEiJ_G0018600	MGP_SPRETEiJ_G0018599	MGP_SPRETEiJ_G0018598	Baz1a (MGP_SPRETEiJ_G0018597)	Cfl2 (MGP_SPRETEiJ_G0018596)	Snx6 (MGP_SPRETEiJ_G0018595)	Eapp (MGP_SPRETEiJ_G0018594) #22	Sptssa (MGP_SPRETEiJ_G0018593)	Egln3 (MGP_SPRETEiJ_G0018592) #23	Npas3 (MGP_SPRETEiJ_G0018591) #24	Akap6 (MGP_SPRETEiJ_G0018590) #25	Arhgap5 (MGP_SPRETEiJ_G0018589) #26	Nubpl (MGP_SPRETEiJ_G0018588) #28	Gpr33 (MGP_SPRETEiJ_G0018587)	Dtd2 (MGP_SPRETEiJ_G0018586) #29	Heatr5a (MGP_SPRETEiJ_G0018585) #30	Hectd1 (MGP_SPRETEiJ_G0018584) #31	Ap4s1 (MGP_SPRETEiJ_G0018583) #32	Strn3 (MGP_SPRETEiJ_G0018582) #33	Coch (MGP_SPRETEiJ_G0018581) #35	Scfd1 (MGP_SPRETEiJ_G0018580) #37	G2e3 (MGP_SPRETEiJ_G0018579)
Steppe mouse	MODERN SPECIES	2243																Eapp (ENSMSIG00000008901) #22	Sptssa (ENSMSIG00000008968)
Mouse	MODERN SPECIES	3	Insm2 (ENSMUSG00000045440)	Aldoart2 (ENSMUSG00000063129)	Nfkbia (ENSMUSG00000021025)	Psma6 (ENSMUSG00000021024)	Prorp (ENSMUSG00000021023)	Ppp2r3c (ENSMUSG00000021022)	Srp54c (ENSMUSG00000079108)	Fam177a2 (ENSMUSG00000094103)	Srp54b (ENSMUSG00000112449)	Fam177a (ENSMUSG00000095595)	Srp54a (ENSMUSG00000073079)	2700097O09Rik (ENSMUSG00000062198)	Baz1a (ENSMUSG00000035021)	Cfl2 (ENSMUSG00000062929)	Snx6 (ENSMUSG00000005656)	Eapp (ENSMUSG00000054302) #22	Sptssa (ENSMUSG00000044408)	Egln3 (ENSMUSG00000035105) #23	Npas3 (ENSMUSG00000021010) #24	Akap6 (ENSMUSG00000061603) #25	Arhgap5 (ENSMUSG00000035133) #26	Nubpl (ENSMUSG00000035142) #28	Gpr33 (ENSMUSG00000035148)	Dtd2 (ENSMUSG00000020956) #29	Heatr5a (ENSMUSG00000035181) #30	Hectd1 (ENSMUSG00000035247) #31	Ap4s1 (ENSMUSG00000020955) #32	Strn3 (ENSMUSG00000020954) #33	Coch (ENSMUSG00000020953) #35	Scfd1 (ENSMUSG00000020952) #37	G2e3 (ENSMUSG00000035293)
Ryukyu mouse	MODERN SPECIES	3	MGP_CAROLIEiJ_G0017763	Insm2 (MGP_CAROLIEiJ_G0017762)	Aldoart2 (MGP_CAROLIEiJ_G0017761)	Nfkbia (MGP_CAROLIEiJ_G0017760)	Psma6 (MGP_CAROLIEiJ_G0017759)	Prorp (MGP_CAROLIEiJ_G0017758)	Ppp2r3c (MGP_CAROLIEiJ_G0017757)	MGP_CAROLIEiJ_G0017756	MGP_CAROLIEiJ_G0017755	MGP_CAROLIEiJ_G0017754	2700097O09Rik (MGP_CAROLIEiJ_G0017753)	MGP_CAROLIEiJ_G0017752	Baz1a (MGP_CAROLIEiJ_G0017751)	Cfl2 (MGP_CAROLIEiJ_G0017750)	Snx6 (MGP_CAROLIEiJ_G0017749)	Eapp (MGP_CAROLIEiJ_G0017748) #22	Sptssa (MGP_CAROLIEiJ_G0017747)	Egln3 (MGP_CAROLIEiJ_G0017746) #23	Npas3 (MGP_CAROLIEiJ_G0017745) #24	Akap6 (MGP_CAROLIEiJ_G0017744) #25	Arhgap5 (MGP_CAROLIEiJ_G0017743) #26	Nubpl (MGP_CAROLIEiJ_G0017742) #28	Gpr33 (MGP_CAROLIEiJ_G0017741)	Dtd2 (MGP_CAROLIEiJ_G0017740) #29	Heatr5a (MGP_CAROLIEiJ_G0017739) #30	Hectd1 (MGP_CAROLIEiJ_G0017738) #31	Ap4s1 (MGP_CAROLIEiJ_G0017737) #32	Strn3 (MGP_CAROLIEiJ_G0017736) #33	Coch (MGP_CAROLIEiJ_G0017735) #35	Scfd1 (MGP_CAROLIEiJ_G0017734) #37	G2e3 (MGP_CAROLIEiJ_G0017733)
Shrew mouse	MODERN SPECIES	20	MGP_PahariEiJ_G0029519	Insm2 (MGP_PahariEiJ_G0029518)	Aldoart2 (MGP_PahariEiJ_G0029517)	Nfkbia (MGP_PahariEiJ_G0029516)	Psma6 (MGP_PahariEiJ_G0029515)	Prorp (MGP_PahariEiJ_G0029514)	Ppp2r3c (MGP_PahariEiJ_G0029513)	MGP_PahariEiJ_G0029512	MGP_PahariEiJ_G0029511	MGP_PahariEiJ_G0029510	2700097O09Rik (MGP_PahariEiJ_G0029509)	MGP_PahariEiJ_G0029508	Baz1a (MGP_PahariEiJ_G0029507)	Cfl2 (MGP_PahariEiJ_G0029506)	Snx6 (MGP_PahariEiJ_G0029505)	Eapp (MGP_PahariEiJ_G0029504) #22	Sptssa (MGP_PahariEiJ_G0029503)	Egln3 (MGP_PahariEiJ_G0029502) #23	Npas3 (MGP_PahariEiJ_G0029501) #24	Akap6 (MGP_PahariEiJ_G0029500) #25	Arhgap5 (MGP_PahariEiJ_G0029499) #26	Nubpl (MGP_PahariEiJ_G0029498) #28	Gpr33 (MGP_PahariEiJ_G0029497)	Dtd2 (MGP_PahariEiJ_G0029496) #29	Heatr5a (MGP_PahariEiJ_G0029495) #30	Hectd1 (MGP_PahariEiJ_G0029494) #31	Ap4s1 (MGP_PahariEiJ_G0029493) #32	Strn3 (MGP_PahariEiJ_G0029492) #33	Coch (MGP_PahariEiJ_G0029491) #35	Scfd1 (MGP_PahariEiJ_G0029490) #37	G2e3 (MGP_PahariEiJ_G0029489)
Rat	MODERN SPECIES	16	Mbip (ENSRNOG00000008610)	Brms1l (ENSRNOG00000008249)	LOC100359668 (ENSRNOG00000033776)	Ralgapa1 (ENSRNOG00000046256)	Aldoart2 (ENSRNOG00000030869)	Nfkbia (ENSRNOG00000007390)	Psma6 (ENSRNOG00000007114)	Prorp (ENSRNOG00000007043)	Ppp2r3c (ENSRNOG00000023591)	Fam177a1 (ENSRNOG00000064975)	Srp54a (ENSRNOG00000032776)	RGD1304624 (ENSRNOG00000006986)	Baz1a (ENSRNOG00000006828)	Cfl2 (ENSRNOG00000045892)	Snx6 (ENSRNOG00000005249)	Eapp (ENSRNOG00000004509) #22	Sptssa (ENSRNOG00000004292)	Rps10 (ENSRNOG00000066637)	Timm23b (ENSRNOG00000031285)	Egln3 (ENSRNOG00000005053) #23	ENSRNOG00000066295	Npas3 (ENSRNOG00000068162) #24	Akap6 (ENSRNOG00000004841) #25	Arhgap5 (ENSRNOG00000004696) #26	ENSRNOG00000070950	Nubpl (ENSRNOG00000027444) #28	Gpr33-ps1 (ENSRNOG00000038990)	Dtd2 (ENSRNOG00000006727) #29	Heatr5a (ENSRNOG00000006483) #30	Hectd1 (ENSRNOG00000006905) #31	Ap4s1 (ENSRNOG00000005765) #32
Cricetidae	ANCESTRAL SPECIES	17	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00950000182987.c.a.a.o.a	ENSGT00940000162733	ENSGT00550000074807.d.t	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37	ENSGT00950000182865.b.a.a
Cricetinae	ANCESTRAL SPECIES	11	ENSGT00900000143527	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00950000182987.c.a.a.o.a	ENSGT00940000162733	ENSGT00550000074807.d.t	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37	ENSGT00950000182865.b.a.a
Chinese hamster chok1gshd	MODERN SPECIES	2	ENSCGRG00001024105	Ralgapa1 (ENSCGRG00001024774)	Insm2 (ENSCGRG00001024873)	Aldoart2 (ENSCGRG00001002722)	ENSCGRG00001024024	Psma6 (ENSCGRG00001001597)	ENSCGRG00001003022	ENSCGRG00001006281	ENSCGRG00001007854	ENSCGRG00001009525	2700097O09Rik (ENSCGRG00001023053)	ENSCGRG00001023351	Baz1a (ENSCGRG00001013418)	Cfl2 (ENSCGRG00001014849)	Snx6 (ENSCGRG00001015718)	Eapp (ENSCGRG00001019760) #22	Sptssa (ENSCGRG00001009767)	Egln3 (ENSCGRG00001011120) #23	Npas3 (ENSCGRG00001014006) #24	Akap6 (ENSCGRG00001015059) #25	ENSCGRG00001009818	Arhgap5 (ENSCGRG00001002196) #26	Nubpl (ENSCGRG00001004006) #28	ENSCGRG00001006641	Gpr33 (ENSCGRG00001011244)	Dtd2 (ENSCGRG00001015902) #29	Heatr5a (ENSCGRG00001017067) #30	ENSCGRG00001024436	Hectd1 (ENSCGRG00001024884) #31	Ap4s1 (ENSCGRG00001023362) #32	Strn3 (ENSCGRG00001000550) #33
Golden Hamster	MODERN SPECIES	716	Nkx2-1 (ENSMAUG00000019963)	ENSMAUG00000012140	Brms1l (ENSMAUG00000020210)	ENSMAUG00000009162	Ralgapa1 (ENSMAUG00000013201)	Insm2 (ENSMAUG00000003017)	Nfkbia (ENSMAUG00000006212)	Psma6 (ENSMAUG00000019916)	Prorp (ENSMAUG00000019281)	Ppp2r3c (ENSMAUG00000016875)	ENSMAUG00000010631	ENSMAUG00000014447	Baz1a (ENSMAUG00000012163)	Cfl2 (ENSMAUG00000000736)	ENSMAUG00000014794	Eapp (ENSMAUG00000011998) #22	Sptssa (ENSMAUG00000014218)	Egln3 (ENSMAUG00000012097) #23	Npas3 (ENSMAUG00000001084) #24	Akap6 (ENSMAUG00000014339) #25	Arhgap5 (ENSMAUG00000008108) #26
Primates	ANCESTRAL SPECIES	2	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33
Haplorrhini	ANCESTRAL SPECIES	12	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00560000078697	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940.pb	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33
Catarrhini	ANCESTRAL SPECIES	9	ENSGT00940000161610	ENSGT00940000161107	ENSGT00560000078697	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940.pb	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00910000147374	ENSGT00940000154553.a.b.e #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32
Cercopithecidae	ANCESTRAL SPECIES	7	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00560000078697	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940.pb	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00910000147374	ENSGT00940000154553.a.b.e #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00390000012569.a.fb.a.a	ENSGT00940000162733	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00390000012569.a.fb.b.b.b.b	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940.pb	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00910000147374	ENSGT00940000154553.a.b.e #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B.x #32	ENSGT00950000183095.a.a #33
Vervet Monkey	MODERN SPECIES	16	ENSCSAG00000015474	MBIP (ENSCSAG00000015484)	BRMS1L (ENSCSAG00000015489)	RALGAPA1 (ENSCSAG00000015500)	INSM2 (ENSCSAG00000019401)	ENSCSAG00000015517	NFKBIA (ENSCSAG00000015526)	PSMA6 (ENSCSAG00000015552)	PRORP (ENSCSAG00000015561)	PPP2R3C (ENSCSAG00000015566)	FAM177A1 (ENSCSAG00000015569)	SRP54 (ENSCSAG00000015575)	BAZ1A (ENSCSAG00000015625)	ENSCSAG00000015638	SNX6 (ENSCSAG00000015642)	EAPP (ENSCSAG00000015646) #22	SPTSSA (ENSCSAG00000015651)	EGLN3 (ENSCSAG00000015653) #23	NPAS3 (ENSCSAG00000015658) #24	ENSCSAG00000019400	AKAP6 (ENSCSAG00000015666) #25	ARHGAP5 (ENSCSAG00000015675) #26	ENSCSAG00000015689	NUBPL (ENSCSAG00000015694) #28	GPR33 (ENSCSAG00000019399)	DTD2 (ENSCSAG00000015699) #29	HEATR5A (ENSCSAG00000015711) #30	HECTD1 (ENSCSAG00000015728) #31	STRN3 (ENSCSAG00000015737) #33	COCH (ENSCSAG00000015743) #35	SCFD1 (ENSCSAG00000015756) #37
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00390000012569.a.fb.b.b.b.b	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000002414.`b.a.a.f	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940.pb	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00910000147374	ENSGT00940000154553.a.b.e #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B.x #32	ENSGT00950000183095.a.a #33
Macaca	ANCESTRAL SPECIES	1	ENSGT00560000078697	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940.pb	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00910000147374	ENSGT00940000154553.a.b.e #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B.x #32	ENSGT00950000183095.a.a #33
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00940000161107	ENSGT00560000078697	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940.pb	ENSGT00390000001332 #22	ENSGT00940000164709.a.b.b.a.b.b.a.a.b.a.a.a.a.b.b.b	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b.e #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B.x #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35
Rhesus	MODERN SPECIES	17	ENSMMUG00000041260	MBIP (ENSMMUG00000004856)	BRMS1L (ENSMMUG00000010665)	INSM2 (ENSMMUG00000016483)	RALGAPA1 (ENSMMUG00000016487)	NFKBIA (ENSMMUG00000020374)	PSMA6 (ENSMMUG00000016544)	PRORP (ENSMMUG00000019875)	PPP2R3C (ENSMMUG00000003530)	FAM177A1 (ENSMMUG00000060802)	SRP54 (ENSMMUG00000015073)	BAZ1A (ENSMMUG00000058073)	CFL2 (ENSMMUG00000039560)	SNX6 (ENSMMUG00000012576)	ENSMMUG00000054661	EAPP (ENSMMUG00000056506) #22	ENSMMUG00000054885	ENSMMUG00000018813	SPTSSA (ENSMMUG00000049364)	ENSMMUG00000057166	ENSMMUG00000064654	EGLN3 (ENSMMUG00000000040) #23	ENSMMUG00000054677	NPAS3 (ENSMMUG00000014839) #24	ENSMMUG00000062990	AKAP6 (ENSMMUG00000015128) #25	ARHGAP5 (ENSMMUG00000016346) #26	ENSMMUG00000056320	ENSMMUG00000054094	NUBPL (ENSMMUG00000012726) #28	GPR33 (ENSMMUG00000015703)
Crab-eating macaque	MODERN SPECIES	17	INSM2 (ENSMFAG00000009696)	NFKBIA (ENSMFAG00000017605)	PSMA6 (ENSMFAG00000043654)	ENSMFAG00000058533	PRORP (ENSMFAG00000001453)	PPP2R3C (ENSMFAG00000033038)	FAM177A1 (ENSMFAG00000062033)	SRP54 (ENSMFAG00000044371)	ENSMFAG00000054611	BAZ1A (ENSMFAG00000043129)	ENSMFAG00000049174	CFL2 (ENSMFAG00000001352)	ENSMFAG00000062650	ENSMFAG00000053943	SNX6 (ENSMFAG00000040770)	EAPP (ENSMFAG00000002843) #22	ENSMFAG00000062453	ENSMFAG00000060787	ENSMFAG00000030913	SPTSSA (ENSMFAG00000048755)	ENSMFAG00000058983	EGLN3 (ENSMFAG00000036942) #23	ENSMFAG00000057891	NPAS3 (ENSMFAG00000043431) #24	ENSMFAG00000000440	AKAP6 (ENSMFAG00000040818) #25	ARHGAP5 (ENSMFAG00000000350) #26	NUBPL (ENSMFAG00000038751) #28	ENSMFAG00000054026	ENSMFAG00000062632	GPR33 (ENSMFAG00000038012)
Pig-tailed macaque	MODERN SPECIES	548	ENSMNEG00000041330	BRMS1L (ENSMNEG00000043819)	ENSMNEG00000044293	ENSMNEG00000000324	RALGAPA1 (ENSMNEG00000028557)	ENSMNEG00000000902	NFKBIA (ENSMNEG00000039580)	ENSMNEG00000036798	ENSMNEG00000010776	PRORP (ENSMNEG00000029194)	PPP2R3C (ENSMNEG00000023978)	SRP54 (ENSMNEG00000006947)	BAZ1A (ENSMNEG00000043110)	CFL2 (ENSMNEG00000039241)	SNX6 (ENSMNEG00000044189)	EAPP (ENSMNEG00000034819) #22	SPTSSA (ENSMNEG00000041970)	EGLN3 (ENSMNEG00000034405) #23	ENSMNEG00000019306	NPAS3 (ENSMNEG00000034614) #24	AKAP6 (ENSMNEG00000039858) #25	ENSMNEG00000011661	ARHGAP5 (ENSMNEG00000044390) #26	ENSMNEG00000027078	NUBPL (ENSMNEG00000031679) #28	DTD2 (ENSMNEG00000045027) #29	HEATR5A (ENSMNEG00000034513) #30	HECTD1 (ENSMNEG00000001350) #31	ENSMNEG00000040344 #32	STRN3 (ENSMNEG00000032023) #33	COCH (ENSMNEG00000031522) #35
Cercopithecinae_b	ANCESTRAL SPECIES	8	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00390000012569.a.fb.b.b.b.b	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000002414.`b.a.a.f	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940.pb	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00910000147374	ENSGT00940000154553.a.b.e #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B.x.b #32	ENSGT00950000183095.a.a #33
Olive baboon	MODERN SPECIES	17	MBIP (ENSPANG00000020627)	ENSPANG00000039092	ENSPANG00000037543	BRMS1L (ENSPANG00000015154)	RALGAPA1 (ENSPANG00000014246)	INSM2 (ENSPANG00000021247)	NFKBIA (ENSPANG00000021245)	PSMA6 (ENSPANG00000029375)	PRORP (ENSPANG00000025053)	PPP2R3C (ENSPANG00000024268)	FAM177A1 (ENSPANG00000038043)	SRP54 (ENSPANG00000023853)	BAZ1A (ENSPANG00000021332)	CFL2 (ENSPANG00000021779)	ENSPANG00000022563	EAPP (ENSPANG00000018424) #22	SPTSSA (ENSPANG00000044993)	ENSPANG00000039055	EGLN3 (ENSPANG00000047484) #23	NPAS3 (ENSPANG00000021333) #24	AKAP6 (ENSPANG00000022397) #25	ENSPANG00000038010	ENSPANG00000038472	ARHGAP5 (ENSPANG00000024272) #26	ENSPANG00000047627	NUBPL (ENSPANG00000021781) #28	GPR33 (ENSPANG00000021666)	DTD2 (ENSPANG00000021336) #29	HEATR5A (ENSPANG00000000801) #30	HECTD1 (ENSPANG00000017149) #31	ENSPANG00000017427 #32
Cercopithecinae_d	ANCESTRAL SPECIES	101																ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00910000147374	ENSGT00940000154553.a.b.e #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B.x.b #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35
Drill	MODERN SPECIES	1086																EAPP (ENSMLEG00000042797) #22	TACR3 (ENSMLEG00000044107)	CENPE (ENSMLEG00000028666)	BDH2 (ENSMLEG00000039239)	SLC9B2 (ENSMLEG00000040747)	SLC9B1 (ENSMLEG00000030173)	CISD2 (ENSMLEG00000039455)	ENSMLEG00000036393	ENSMLEG00000038269	ENSMLEG00000030905	MANBA (ENSMLEG00000036247)	ENSMLEG00000042292	NFKB1 (ENSMLEG00000030561)	SLC39A8 (ENSMLEG00000022871)
Sooty mangabey	MODERN SPECIES	186																EAPP (ENSCATG00000044341) #22	SPTSSA (ENSCATG00000029208)	ENSCATG00000030363	EGLN3 (ENSCATG00000040041) #23	ENSCATG00000043412	NPAS3 (ENSCATG00000029945) #24	AKAP6 (ENSCATG00000037210) #25	ENSCATG00000018768	ARHGAP5 (ENSCATG00000035037) #26	ENSCATG00000015897	NUBPL (ENSCATG00000033880) #28	DTD2 (ENSCATG00000031883) #29	HEATR5A (ENSCATG00000032282) #30	HECTD1 (ENSCATG00000032933) #31	ENSCATG00000035780 #32	STRN3 (ENSCATG00000022375) #33
Rhinopithecus	ANCESTRAL SPECIES	225																ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b.e #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00930000150941.x.b.a
Black snub-nosed monkey	MODERN SPECIES	1258																EAPP (ENSRBIG00000044230) #22	SPTSSA (ENSRBIG00000039846)	EGLN3 (ENSRBIG00000039961) #23	ENSRBIG00000019858	NPAS3 (ENSRBIG00000032686) #24	ENSRBIG00000032788	AKAP6 (ENSRBIG00000038045) #25	ARHGAP5 (ENSRBIG00000016020) #26	ENSRBIG00000038307	NUBPL (ENSRBIG00000033232) #28	DTD2 (ENSRBIG00000031412) #29	HEATR5A (ENSRBIG00000035494) #30	HECTD1 (ENSRBIG00000014027) #31	ENSRBIG00000031706 #32	STRN3 (ENSRBIG00000034106) #33	COCH (ENSRBIG00000024567) #35
Golden snub-nosed monkey	MODERN SPECIES	1658																EAPP (ENSRROG00000029693) #22	ENSRROG00000039005	SPTSSA (ENSRROG00000031858)
Hominoidea	ANCESTRAL SPECIES	12	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00390000012569.a.fb.a.a	ENSGT00940000162733	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940.pb	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00910000147374	ENSGT00940000154553.a.b.e #26	ENSGT00910000147163	ENSGT00950000183193.B #28	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32
Hominidae	ANCESTRAL SPECIES	14	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00390000012569.a.fb.a.a	ENSGT00940000162733	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940.pb	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00910000147374	ENSGT00940000154553.a.b.e #26	ENSGT00950000183193.B #28	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	12	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00390000012569.a.fb.a.a	ENSGT00940000162733	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00940000158135.i	ENSGT00950000183000.c.b	ENSGT00940000154940.pb	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00910000147374	ENSGT00940000154553.a.b.e #26	ENSGT00950000183193.B #28	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33
Gorilla	MODERN SPECIES	5	ENSGGOG00000037483	RALGAPA1 (ENSGGOG00000008354)	INSM2 (ENSGGOG00000041074)	ENSGGOG00000039181	NFKBIA (ENSGGOG00000009397)	ENSGGOG00000036672	PSMA6 (ENSGGOG00000013201)	PRORP (ENSGGOG00000012248)	ENSGGOG00000012223	ENSGGOG00000041904	SRP54 (ENSGGOG00000002926)	ENSGGOG00000028571	ENSGGOG00000008915	CFL2 (ENSGGOG00000038032)	SNX6 (ENSGGOG00000007659)	EAPP (ENSGGOG00000007784) #22	EGLN3 (ENSGGOG00000014900) #23	ENSGGOG00000037716	ENSGGOG00000022941 #24	ENSGGOG00000041161	AKAP6 (ENSGGOG00000025608) #25	ENSGGOG00000042101	ARHGAP5 (ENSGGOG00000002593) #26	NUBPL (ENSGGOG00000009764) #28	GPR33 (ENSGGOG00000026905)	DTD2 (ENSGGOG00000043676) #29	HEATR5A (ENSGGOG00000000655) #30	HECTD1 (ENSGGOG00000026552) #31	ENSGGOG00000003198 #32	STRN3 (ENSGGOG00000006096) #33	ENSGGOG00000042724
Homo/Pan group	ANCESTRAL SPECIES	11	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00390000012569.a.fb.a.a	ENSGT00940000162733	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00940000158135.i	ENSGT00950000183000.c.b	ENSGT00940000154940.pb	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b.e #26	ENSGT00950000183193.B #28	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35
Pan	ANCESTRAL SPECIES	8	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00390000012569.a.fb.a.a	ENSGT00940000162733	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00550000074824	ENSGT00940000158135.i	ENSGT00390000006922.m.a	ENSGT00950000183000.c.b	ENSGT00940000154940.pb	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b.e #26	ENSGT00950000183193.B #28	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35
Chimpanzee	MODERN SPECIES	5	MBIP (ENSPTRG00000006273)	BRMS1L (ENSPTRG00000006272)	RALGAPA1 (ENSPTRG00000006268)	INSM2 (ENSPTRG00000006267)	ENSPTRG00000041063	NFKBIA (ENSPTRG00000006265)	ENSPTRG00000043789	PSMA6 (ENSPTRG00000006264)	PRORP (ENSPTRG00000006263)	PPP2R3C (ENSPTRG00000006261)	FAM177A1 (ENSPTRG00000006259)	BAZ1A (ENSPTRG00000006255)	ENSPTRG00000051817	CFL2 (ENSPTRG00000006254)	SNX6 (ENSPTRG00000006253)	EAPP (ENSPTRG00000006252) #22	SPTSSA (ENSPTRG00000006251)	EGLN3 (ENSPTRG00000006250) #23	ENSPTRG00000043856	NPAS3 (ENSPTRG00000006249) #24	AKAP6 (ENSPTRG00000006247) #25	ARHGAP5 (ENSPTRG00000006246) #26	NUBPL (ENSPTRG00000006245) #28	GPR33 (ENSPTRG00000032557)	DTD2 (ENSPTRG00000006244) #29	HEATR5A (ENSPTRG00000006241) #30	HECTD1 (ENSPTRG00000006240) #31	AP4S1 (ENSPTRG00000006239) #32	STRN3 (ENSPTRG00000006238) #33	COCH (ENSPTRG00000006237) #35	ENSPTRG00000047778
Bonobo	MODERN SPECIES	5	BRMS1L (ENSPPAG00000029997)	ENSPPAG00000027690	RALGAPA1 (ENSPPAG00000038560)	ENSPPAG00000013978	ENSPPAG00000039340	ENSPPAG00000041784	ENSPPAG00000006620	ENSPPAG00000024947	PRORP (ENSPPAG00000040873)	PPP2R3C (ENSPPAG00000030301)	SRP54 (ENSPPAG00000017434)	BAZ1A (ENSPPAG00000026030)	ENSPPAG00000008100	CFL2 (ENSPPAG00000007558)	SNX6 (ENSPPAG00000037141)	EAPP (ENSPPAG00000030095) #22	EGLN3 (ENSPPAG00000018135) #23	ENSPPAG00000004989	NPAS3 (ENSPPAG00000028096) #24	AKAP6 (ENSPPAG00000036668) #25	ARHGAP5 (ENSPPAG00000037127) #26	ENSPPAG00000034553 #28	ENSPPAG00000033459	GPR33 (ENSPPAG00000016765)	DTD2 (ENSPPAG00000029393) #29	HEATR5A (ENSPPAG00000034508) #30	HECTD1 (ENSPPAG00000036559) #31	ENSPPAG00000041450 #32	STRN3 (ENSPPAG00000028044) #33	COCH (ENSPPAG00000042223) #35	ENSPPAG00000038553
Human	MODERN SPECIES	5	NKX2-8 (ENSG00000136327)	NKX2-1 (ENSG00000136352)	MBIP (ENSG00000151332)	BRMS1L (ENSG00000100916)	RALGAPA1 (ENSG00000174373)	INSM2 (ENSG00000168348)	NFKBIA (ENSG00000100906)	PSMA6 (ENSG00000100902)	PRORP (ENSG00000100890)	PPP2R3C (ENSG00000092020)	FAM177A1 (ENSG00000151327)	SRP54 (ENSG00000100883)	BAZ1A (ENSG00000198604)	CFL2 (ENSG00000165410)	SNX6 (ENSG00000129515)	EAPP (ENSG00000129518) #22	SPTSSA (ENSG00000165389)	EGLN3 (ENSG00000129521) #23	NPAS3 (ENSG00000151322) #24	AKAP6 (ENSG00000151320) #25	ARHGAP5 (ENSG00000100852) #26	NUBPL (ENSG00000151413) #28	GPR33 (ENSG00000214943)	DTD2 (ENSG00000129480) #29	ENSG00000203546	HEATR5A (ENSG00000129493) #30	HECTD1 (ENSG00000092148) #31	AP4S1 (ENSG00000100478) #32	STRN3 (ENSG00000196792) #33	COCH (ENSG00000100473) #35	SCFD1 (ENSG00000092108) #37
Orangutan	MODERN SPECIES	5	ENSPPYG00000041488	MBIP (ENSPPYG00000005748)	BRMS1L (ENSPPYG00000005747)	RALGAPA1 (ENSPPYG00000005746)	INSM2 (ENSPPYG00000005745)	ENSPPYG00000034833	ENSPPYG00000005743	PSMA6 (ENSPPYG00000029719)	PRORP (ENSPPYG00000005742)	PPP2R3C (ENSPPYG00000005741)	FAM177A1 (ENSPPYG00000005740)	SRP54 (ENSPPYG00000005739)	BAZ1A (ENSPPYG00000005738)	CFL2 (ENSPPYG00000005737)	SNX6 (ENSPPYG00000005736)	EAPP (ENSPPYG00000005735) #22	SPTSSA (ENSPPYG00000005733)	EGLN3 (ENSPPYG00000005732) #23	NPAS3 (ENSPPYG00000005731) #24	AKAP6 (ENSPPYG00000005730) #25	ARHGAP5 (ENSPPYG00000005729) #26	NUBPL (ENSPPYG00000005727) #28	DTD2 (ENSPPYG00000036770) #29	HEATR5A (ENSPPYG00000005725) #30	HECTD1 (ENSPPYG00000005724) #31	ENSPPYG00000005723 #32	STRN3 (ENSPPYG00000005722) #33	COCH (ENSPPYG00000005721) #35	SCFD1 (ENSPPYG00000005720) #37	G2E3 (ENSPPYG00000005719)	PRKD1 (ENSPPYG00000005718)
Gibbon	MODERN SPECIES	10	ENSNLEG00000003924	MBIP (ENSNLEG00000003876)	BRMS1L (ENSNLEG00000032667)	RALGAPA1 (ENSNLEG00000003739)	INSM2 (ENSNLEG00000003723)	NFKBIA (ENSNLEG00000003728)	ENSNLEG00000003724	ENSNLEG00000028320	ENSNLEG00000032079	PRORP (ENSNLEG00000003691)	PPP2R3C (ENSNLEG00000003591)	SRP54 (ENSNLEG00000003496)	BAZ1A (ENSNLEG00000003440)	CFL2 (ENSNLEG00000003417)	SNX6 (ENSNLEG00000003310)	EAPP (ENSNLEG00000034702) #22	SPTSSA (ENSNLEG00000029839)	EGLN3 (ENSNLEG00000003247) #23	ENSNLEG00000032145	ENSNLEG00000032055 #24	AKAP6 (ENSNLEG00000003187) #25	ENSNLEG00000003168 #26	ENSNLEG00000028683	NUBPL (ENSNLEG00000003141) #28	DTD2 (ENSNLEG00000034317) #29	ENSNLEG00000027838	RIOX1 (ENSNLEG00000003130)	HEATR4 (ENSNLEG00000003060)	NUMB (ENSNLEG00000002944)	PAPLN (ENSNLEG00000002925)	PSEN1 (ENSNLEG00000002855)
Platyrrhini	DUPLICATION
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00390000001332.k.a #22
Cebidae	ANCESTRAL SPECIES																	ENSGT00390000001332.k.a #22
Cebidae_a	ANCESTRAL SPECIES	4	ENSGT00940000161107	ENSGT00560000078697	ENSGT00510000047831	ENSGT00940000154191.i.a.r.b	ENSGT00940000158921.g	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940.pb	ENSGT00390000001332.k.a #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT01030000234542.b.a.a.b.a.b.k.b	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37
Capuchin	MODERN SPECIES	496													BAZ1A (ENSCCAG00000028091)	CFL2 (ENSCCAG00000037328)	SNX6 (ENSCCAG00000033377)	ENSCCAG00000020846 #22	SPESP1 (ENSCCAG00000035908)	ENSCCAG00000030222	ENSCCAG00000018938	CORO2B (ENSCCAG00000009202)	ITGA11 (ENSCCAG00000035460)	FEM1B (ENSCCAG00000022866)	CLN6 (ENSCCAG00000033490)	ENSCCAG00000027951	CALML4 (ENSCCAG00000024372)	PIAS1 (ENSCCAG00000025457)	SKOR1 (ENSCCAG00000026202)
Mas night monkey	MODERN SPECIES	819	NKX2-8 (ENSANAG00000023511)	NKX2-1 (ENSANAG00000028255)	ENSANAG00000023382	MBIP (ENSANAG00000027296)	BRMS1L (ENSANAG00000026406)	RALGAPA1 (ENSANAG00000029085)	NFKBIA (ENSANAG00000030609)	ENSANAG00000020043	PRORP (ENSANAG00000029895)	PPP2R3C (ENSANAG00000019227)	SRP54 (ENSANAG00000022133)	BAZ1A (ENSANAG00000009176)	CFL2 (ENSANAG00000001737)	SNX6 (ENSANAG00000019855)	ENSANAG00000030653	ENSANAG00000021068 #22	ENSANAG00000024247	EGLN3 (ENSANAG00000037222) #23	ENSANAG00000020399	NPAS3 (ENSANAG00000023028) #24	ENSANAG00000020942	AKAP6 (ENSANAG00000034900) #25	ARHGAP5 (ENSANAG00000037055) #26	NUBPL (ENSANAG00000036864) #28	DTD2 (ENSANAG00000036862) #29	ENSANAG00000033419	ENSANAG00000035920 #30	HECTD1 (ENSANAG00000037367) #31	AP4S1 (ENSANAG00000026444) #32	STRN3 (ENSANAG00000026168) #33	COCH (ENSANAG00000029746) #35
Platyrrhini	ANCESTRAL SPECIES	6	ENSGT00940000156910	ENSGT00510000046843.b	ENSGT00430000032851	ENSGT00410000029301	ENSGT00430000033088	ENSGT00950000182952.C	ENSGT00940000158382	ENSGT00940000158177.b	ENSGT00940000158968	ENSGT00940000157574	ENSGT00730000111529	ENSGT00940000158686	ENSGT00940000160413	ENSGT00940000158342.b	ENSGT00390000018272	ENSGT00390000001332.k.b #22	ENSGT00940000157538	ENSGT00730000111039.C	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574	ENSGT00950000182839.A.c	ENSGT00940000158251	ENSGT00940000162858	ENSGT00940000163725	ENSGT00390000014620.j	ENSGT00940000157277	ENSGT00940000156144	ENSGT00530000063745.b	ENSGT00390000006546
Mas night monkey	MODERN SPECIES	844	PLEKHG7 (ENSANAG00000037547)	ENSANAG00000036770	ENSANAG00000020232	ENSANAG00000036734	BTG1 (ENSANAG00000037621)	ENSANAG00000037565	DCN (ENSANAG00000022968)	LUM (ENSANAG00000020478)	KERA (ENSANAG00000037464)	EPYC (ENSANAG00000037744)	ENSANAG00000018323	ATP2B1 (ENSANAG00000027760)	POC1B (ENSANAG00000023816)	DUSP6 (ENSANAG00000037906)	KITLG (ENSANAG00000001756)	ENSANAG00000022268 #22	TMTC3 (ENSANAG00000021779)	CEP290 (ENSANAG00000021204)	C12orf29 (ENSANAG00000023232)
Cebidae	ANCESTRAL SPECIES	2	ENSGT00390000003156.a.b.k.a.b	ENSGT00940000156910	ENSGT00510000046843.b	ENSGT00430000033088	ENSGT00410000029301	ENSGT00950000182952.C	ENSGT00940000158382	ENSGT00940000158177.b	ENSGT00940000158968	ENSGT00940000157574	ENSGT00730000111529	ENSGT00940000158686	ENSGT00940000160413	ENSGT00940000158342.b	ENSGT00390000018272	ENSGT00390000001332.k.b #22	ENSGT00940000157538	ENSGT00730000111039.C	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574	ENSGT00950000182839.A.c	ENSGT00940000158251	ENSGT00940000162858	ENSGT00940000163725	ENSGT00390000014620.j	ENSGT00940000157277	ENSGT00940000156144	ENSGT00530000063745.b	ENSGT00390000006546
Cebidae_a	ANCESTRAL SPECIES	8	ENSGT00390000003156.a.b.k.a.b	ENSGT00940000156910	ENSGT00510000046843.b	ENSGT00430000033088	ENSGT00410000029301	ENSGT00950000182952.C	ENSGT00940000158382	ENSGT00940000158177.b	ENSGT00940000158968	ENSGT00940000157574	ENSGT00730000111529	ENSGT00940000158686	ENSGT00940000160413	ENSGT00940000158342.b	ENSGT00390000018272	ENSGT00390000001332.k.b #22	ENSGT00940000157538	ENSGT00730000111039.C	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574	ENSGT00950000182839.A.c	ENSGT00940000158251	ENSGT00940000162858	ENSGT00940000163725	ENSGT00390000014620.j	ENSGT00940000157277	ENSGT00390000008708.o.a	ENSGT00940000156144	ENSGT00530000063745.b
Bolivian squirrel monkey	MODERN SPECIES	67	PLEKHG7 (ENSSBOG00000035263)	ENSSBOG00000027119	ENSSBOG00000029330	BTG1 (ENSSBOG00000031360)	DCN (ENSSBOG00000032365)	LUM (ENSSBOG00000030254)	KERA (ENSSBOG00000020371)	EPYC (ENSSBOG00000026508)	CCER1 (ENSSBOG00000001585)	ENSSBOG00000030149	ATP2B1 (ENSSBOG00000022877)	POC1B (ENSSBOG00000023395)	DUSP6 (ENSSBOG00000022133)	ENSSBOG00000021475	KITLG (ENSSBOG00000026788)	ENSSBOG00000025089 #22	TMTC3 (ENSSBOG00000027049)	CEP290 (ENSSBOG00000024214)	C12orf29 (ENSSBOG00000033321)	C12orf50 (ENSSBOG00000016644)	MGAT4C (ENSSBOG00000025097)	NTS (ENSSBOG00000032612)	RASSF9 (ENSSBOG00000030703)	ALX1 (ENSSBOG00000028789)	LRRIQ1 (ENSSBOG00000024808)	TSPAN19 (ENSSBOG00000018936)	SLC6A15 (ENSSBOG00000036273)	ENSSBOG00000035574	ENSSBOG00000032046	TMTC2 (ENSSBOG00000024696)	ENSSBOG00000025592
Platyrrhini	ANCESTRAL SPECIES	4	ENSGT00940000161107	ENSGT00560000078697	ENSGT00510000047831	ENSGT00940000158921.g	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940.pb	ENSGT00390000001332.l #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT01030000234542.b.a.a.b.a.b.k.b	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35
Cebidae	ANCESTRAL SPECIES	3	ENSGT00940000161610	ENSGT00940000161107	ENSGT00560000078697	ENSGT00510000047831	ENSGT00940000158921.g	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940.pb	ENSGT00390000001332.l #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT01020000230798	ENSGT00940000158051 #24	ENSGT01030000234542.b.a.a.b.a.b.k.b	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35
Marmoset	MODERN SPECIES	1	INSM2 (ENSCJAG00000006816)	ENSCJAG00000081814	ENSCJAG00000078340	ENSCJAG00000006806	ENSCJAG00000073389	ENSCJAG00000071935	PSMA6 (ENSCJAG00000041141)	PRORP (ENSCJAG00000006750)	PPP2R3C (ENSCJAG00000041694)	ENSCJAG00000062861	FAM177A1 (ENSCJAG00000069586)	SRP54 (ENSCJAG00000006581)	BAZ1A (ENSCJAG00000006421)	CFL2 (ENSCJAG00000041665)	SNX6 (ENSCJAG00000044761)	EAPP (ENSCJAG00000042239) #22	ENSCJAG00000032302	SPTSSA (ENSCJAG00000086959)	EGLN3 (ENSCJAG00000005424) #23	NPAS3 (ENSCJAG00000047425) #24	AKAP6 (ENSCJAG00000005474) #25	ARHGAP5 (ENSCJAG00000005538) #26	NUBPL (ENSCJAG00000005582) #28	GPR33 (ENSCJAG00000035428)	DTD2 (ENSCJAG00000073851) #29	ENSCJAG00000075200	HEATR5A (ENSCJAG00000005593) #30	ENSCJAG00000073672	HECTD1 (ENSCJAG00000005631) #31	AP4S1 (ENSCJAG00000005786) #32	ENSCJAG00000071091
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00390000001332.l #22
Capuchin	MODERN SPECIES	132					PTGIS (ENSCCAG00000028852)	KCNB1 (ENSCCAG00000022245)	ZNFX1 (ENSCCAG00000027959)	DDX27 (ENSCCAG00000029782)	STAU1 (ENSCCAG00000034339)	CSE1L (ENSCCAG00000014373)	ARFGEF2 (ENSCCAG00000035477)	PREX1 (ENSCCAG00000020464)	ENSCCAG00000034261	SULF2 (ENSCCAG00000021288)	NCOA3 (ENSCCAG00000018891)	ENSCCAG00000031328 #22	ENSCCAG00000020080	ZMYND8 (ENSCCAG00000034996)	EYA2 (ENSCCAG00000006439)	SLC2A10 (ENSCCAG00000024883)	TP53RK (ENSCCAG00000025781)	ENSCCAG00000032665	SLC13A3 (ENSCCAG00000023479)	OCSTAMP (ENSCCAG00000032955)	ZNF334 (ENSCCAG00000037086)	ELMO2 (ENSCCAG00000021611)	SLC35C2 (ENSCCAG00000033921)	CDH22 (ENSCCAG00000031781)	CD40 (ENSCCAG00000031327)	NCOA5 (ENSCCAG00000030312)	SLC12A5 (ENSCCAG00000031231)
Bolivian squirrel monkey	MODERN SPECIES	50	BIRC2 (ENSSBOG00000034069)	BIRC3 (ENSSBOG00000031187)	YAP1 (ENSSBOG00000027497)	ENSSBOG00000036077	CFAP300 (ENSSBOG00000033758)	CEP126 (ENSSBOG00000028647)	ANGPTL5 (ENSSBOG00000031015)	ENSSBOG00000032893	TRPC6 (ENSSBOG00000019836)	ENSSBOG00000021319	ENSSBOG00000023108	ENSSBOG00000023277	PGR (ENSSBOG00000013714)	ARHGAP42 (ENSSBOG00000035822)	CNTN5 (ENSSBOG00000023228)	ENSSBOG00000018311 #22	CCDC82 (ENSSBOG00000027897)	MAML2 (ENSSBOG00000031458)	MTMR2 (ENSSBOG00000012973)	CEP57 (ENSSBOG00000030610)	FAM76B (ENSSBOG00000017588)
Mas night monkey	MODERN SPECIES	835																ENSANAG00000022457 #22	ENSANAG00000022652	IZUMO3 (ENSANAG00000021921)	ELAVL2 (ENSANAG00000032553)	ENSANAG00000029023	DMRTA1 (ENSANAG00000021248)	CDKN2B (ENSANAG00000018770)	CDKN2A (ENSANAG00000025540)	ENSANAG00000019784	MTAP (ENSANAG00000029387)	IFNE (ENSANAG00000027745)	KLHL9 (ENSANAG00000033732)	ENSANAG00000031381	HACD4 (ENSANAG00000027847)	FOCAD (ENSANAG00000029314)	MLLT3 (ENSANAG00000032095)
Tarsier	MODERN SPECIES	6381																EAPP (ENSTSYG00000006040) #22	ENSTSYG00000025976	ENSTSYG00000029878	ENSTSYG00000030381	EPB41L2 (ENSTSYG00000004773)	SMLR1 (ENSTSYG00000029108)
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37	ENSGT00950000182865.b.a.a
Lemuriformes	ANCESTRAL SPECIES	8																ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37	ENSGT00950000182865.b.a.a
Mouse lemur	MODERN SPECIES	22	ENSMICG00000032621	ENSMICG00000026534	CGRRF1 (ENSMICG00000047854)	SAMD4A (ENSMICG00000016212)	GCH1 (ENSMICG00000016234)	WDHD1 (ENSMICG00000016239)	SOCS4 (ENSMICG00000047239)	MAPK1IP1L (ENSMICG00000035738)	LGALS3 (ENSMICG00000016283)	DLGAP5 (ENSMICG00000016289)	ENSMICG00000042184	ENSMICG00000041981	ATG14 (ENSMICG00000000939)	TBPL2 (ENSMICG00000000943)	KTN1 (ENSMICG00000032329)	EAPP (ENSMICG00000044807) #22	SPTSSA (ENSMICG00000046623)	ENSMICG00000032213	ENSMICG00000047011	EGLN3 (ENSMICG00000000618) #23	NPAS3 (ENSMICG00000031841) #24	AKAP6 (ENSMICG00000027865) #25	ARHGAP5 (ENSMICG00000007275) #26	NUBPL (ENSMICG00000034340) #28	ENSMICG00000027167	DTD2 (ENSMICG00000030584) #29	HEATR5A (ENSMICG00000007619) #30	HECTD1 (ENSMICG00000034057) #31	AP4S1 (ENSMICG00000003359) #32	STRN3 (ENSMICG00000026845) #33	COCH (ENSMICG00000003344) #35
Lemuriformes_a	ANCESTRAL SPECIES	194																ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37	ENSGT00950000182865.b.a.a
Coquerels sifaka	MODERN SPECIES	389																EAPP (ENSPCOG00000021389) #22	SPTSSA (ENSPCOG00000027257)	ENSPCOG00000015194 #23	NPAS3 (ENSPCOG00000020941) #24	AKAP6 (ENSPCOG00000013700) #25	ARHGAP5 (ENSPCOG00000024862) #26	ENSPCOG00000015979	NUBPL (ENSPCOG00000022890) #28	DTD2 (ENSPCOG00000017568) #29	HEATR5A (ENSPCOG00000022777) #30	HECTD1 (ENSPCOG00000020200) #31	ENSPCOG00000028456	AP4S1 (ENSPCOG00000016646) #32	STRN3 (ENSPCOG00000001434) #33	COCH (ENSPCOG00000023301) #35	ENSPCOG00000012773
Greater bamboo lemur	MODERN SPECIES	1334																EAPP (ENSPSMG00000008618) #22	SPTSSA (ENSPSMG00000008591)	EGLN3 (ENSPSMG00000008578) #23
Bushbaby	MODERN SPECIES	167	NKX2-1 (ENSOGAG00000028624)	MBIP (ENSOGAG00000013109)	BRMS1L (ENSOGAG00000016974)	RALGAPA1 (ENSOGAG00000014961)	INSM2 (ENSOGAG00000024855)	NFKBIA (ENSOGAG00000003716)	PSMA6 (ENSOGAG00000008492)	PRORP (ENSOGAG00000024550)	PPP2R3C (ENSOGAG00000008489)	FAM177A1 (ENSOGAG00000008488)	SRP54 (ENSOGAG00000012188)	ENSOGAG00000031729	BAZ1A (ENSOGAG00000002234)	CFL2 (ENSOGAG00000032321)	SNX6 (ENSOGAG00000008020)	EAPP (ENSOGAG00000012492) #22	SPTSSA (ENSOGAG00000030285)	ENSOGAG00000001254	EGLN3 (ENSOGAG00000014893) #23	NPAS3 (ENSOGAG00000014886) #24	AKAP6 (ENSOGAG00000001808) #25	ARHGAP5 (ENSOGAG00000029734) #26	NUBPL (ENSOGAG00000011550) #28	DTD2 (ENSOGAG00000013060) #29	HEATR5A (ENSOGAG00000013052) #30	AP4S1 (ENSOGAG00000004703) #32	STRN3 (ENSOGAG00000004698) #33	COCH (ENSOGAG00000004695) #35	SCFD1 (ENSOGAG00000017096) #37	G2E3 (ENSOGAG00000017094)	PRKD1 (ENSOGAG00000002966)
Atlantogenata	ANCESTRAL SPECIES	8	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00940000163080	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37	ENSGT00950000182865.b.a.a
Afrotheria	ANCESTRAL SPECIES	6	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37	ENSGT00950000182865.b.a.a
Afrotheria_a	ANCESTRAL SPECIES	6	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391	ENSGT00940000162733	ENSGT00550000074807.d	ENSGT00390000002201	ENSGT00940000155583	ENSGT00390000016736.a	ENSGT00550000074824	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00390000001332 #22	ENSGT00390000002766.b.b	ENSGT00940000158745 #23	ENSGT00940000158051 #24	ENSGT00810000125473.B #25	ENSGT00940000154553.a.b #26	ENSGT00950000183193.B #28	ENSGT01020000230438.B.b.b.a	ENSGT00940000153431.a #29	ENSGT00390000006205.b #30	ENSGT00940000156572 #31	ENSGT00970000193421.B #32	ENSGT00950000183095.a.a #33	ENSGT00940000159386 #35	ENSGT00550000074845 #37	ENSGT00950000182865.b.a.a
Hyrax	MODERN SPECIES	2117																EAPP (ENSPCAG00000002226) #22
Elephant	MODERN SPECIES	602	NKX2-1 (ENSLAFG00000028846)	MBIP (ENSLAFG00000013070)	BRMS1L (ENSLAFG00000017810)	RALGAPA1 (ENSLAFG00000008245)	INSM2 (ENSLAFG00000008242)	NFKBIA (ENSLAFG00000018611)	PSMA6 (ENSLAFG00000017359)	PRORP (ENSLAFG00000009871)	ENSLAFG00000009868	FAM177A1 (ENSLAFG00000022331)	SRP54 (ENSLAFG00000012007)	ENSLAFG00000025618	BAZ1A (ENSLAFG00000010581)	CFL2 (ENSLAFG00000010579)	SNX6 (ENSLAFG00000010573)	EAPP (ENSLAFG00000010570) #22	SPTSSA (ENSLAFG00000030948)	EGLN3 (ENSLAFG00000007342) #23	NPAS3 (ENSLAFG00000007169) #24	AKAP6 (ENSLAFG00000000717) #25	ARHGAP5 (ENSLAFG00000012386) #26	NUBPL (ENSLAFG00000004185) #28	GPR33 (ENSLAFG00000031980)	DTD2 (ENSLAFG00000018559) #29	HEATR5A (ENSLAFG00000001023) #30	HECTD1 (ENSLAFG00000005491) #31	AP4S1 (ENSLAFG00000005485) #32	STRN3 (ENSLAFG00000012349) #33	COCH (ENSLAFG00000012342) #35	SCFD1 (ENSLAFG00000006117) #37	G2E3 (ENSLAFG00000005684)
Tenrec	MODERN SPECIES	14274																EAPP (ENSETEG00000009023) #22
Xenarthra	ANCESTRAL SPECIES																	ENSGT00390000001332 #22
Sloth	MODERN SPECIES	2330																EAPP (ENSCHOG00000005412) #22
Armadillo	MODERN SPECIES	2602																EAPP (ENSDNOG00000046713) #22	ENSDNOG00000018790	EGLN3 (ENSDNOG00000036494) #23	NPAS3 (ENSDNOG00000048909) #24	AKAP6 (ENSDNOG00000047853) #25	ARHGAP5 (ENSDNOG00000011488) #26
Marsupialia	ANCESTRAL SPECIES	9													ENSGT00940000164663	ENSGT01050000244936.d.a.a	ENSGT01030000234536.b.b.a	ENSGT00390000001332 #22	ENSGT00940000161491.d	ENSGT00940000162793	ENSGT00940000163076	ENSGT00940000161516	ENSGT00390000003866.a.b	ENSGT00390000011474	ENSGT00940000162342	ENSGT00940000158683.b	ENSGT01030000234573.B.c.a	ENSGT00950000183209.b.b	ENSGT00940000155720	ENSGT00390000010349.a.a	ENSGT00940000160944	ENSGT00950000183136.a.b	ENSGT00530000063867.a.b
Opossum	MODERN SPECIES		PCBD2 (ENSMODG00000038053)	PITX1 (ENSMODG00000048877)	MACROH2A1 (ENSMODG00000014397)	TIFAB (ENSMODG00000037601)	CXCL14 (ENSMODG00000014463)	SLC25A48 (ENSMODG00000014470)	PTGER2 (ENSMODG00000014473)	TXNDC16 (ENSMODG00000014477)	GPR137C (ENSMODG00000014483)	ENSMODG00000036920	PSMC6 (ENSMODG00000014500)	STYX (ENSMODG00000029372)	GNPNAT1 (ENSMODG00000014505)	ENSMODG00000043319	SNX6 (ENSMODG00000014517)	EAPP (ENSMODG00000014525) #22	ENSMODG00000014528	ENSMODG00000045965	ENSMODG00000023887	ENSMODG00000023886	ENSMODG00000038794	ENSMODG00000014551	ENSMODG00000023888	ENSMODG00000014576	ENSMODG00000014577	ENSMODG00000040125	ENSMODG00000014596	ENSMODG00000023889	ENSMODG00000014545	ENSMODG00000014580	ENSMODG00000046961
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00390000007341.a	ENSGT00510000048466	ENSGT00390000012435	ENSGT00940000157509	ENSGT00940000157150	ENSGT00390000018516	ENSGT00390000004717	ENSGT00950000182834.A.a.a	ENSGT00390000008920.c.a	ENSGT00660000095541.a.b	ENSGT00940000156106	ENSGT00940000158704	ENSGT00940000158296	ENSGT00940000155369.A	ENSGT00940000154940	ENSGT00390000001332 #22
Diprotodontia	ANCESTRAL SPECIES																	ENSGT00390000001332 #22
Diprotodontia_a	ANCESTRAL SPECIES																	ENSGT00390000001332 #22
koala	MODERN SPECIES	105													ENSPCIG00000024435	ENSPCIG00000033208	ENSPCIG00000018357	EAPP (ENSPCIG00000018355) #22	ENSPCIG00000037042	SNX6 (ENSPCIG00000009058)	MDGA2 (ENSPCIG00000012334)	LRFN5 (ENSPCIG00000012328)	ATL1 (ENSPCIG00000012325)	SAV1 (ENSPCIG00000012324)	ENSPCIG00000012321	GMFB (ENSPCIG00000012315)	ENSPCIG00000012314	ENSPCIG00000012313	NEMF (ENSPCIG00000015034)	KLHDC2 (ENSPCIG00000012310)	KLHDC1 (ENSPCIG00000012308)	POLE2 (ENSPCIG00000011901)	ENSPCIG00000011887
Wallaby	MODERN SPECIES	3522																ENSMEUG00000008331 #22
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000024428	ENSSHAG00000005447	PRORP (ENSSHAG00000004793)	PPP2R3C (ENSSHAG00000004348)	ENSSHAG00000023976	ENSSHAG00000000671	ENSSHAG00000001967	ENSSHAG00000025205	ENSSHAG00000000762	ENSSHAG00000002053	ENSSHAG00000003890	ENSSHAG00000024873	ENSSHAG00000003743	ENSSHAG00000003214	ENSSHAG00000028625	ENSSHAG00000030048 #22	ENSSHAG00000031274	ENSSHAG00000002490	ENSSHAG00000023080	ENSSHAG00000031263	ENSSHAG00000029628	ENSSHAG00000024941	ENSSHAG00000000466	ENSSHAG00000000457	ENSSHAG00000022138	ENSSHAG00000031448	ENSSHAG00000026221	ENSSHAG00000022305	ENSSHAG00000002300	ENSSHAG00000006262	ENSSHAG00000005558
Platypus	MODERN SPECIES	5	SLC25A21 (ENSOANG00000014067)	PAX9 (ENSOANG00000014065)	NKX2-1 (ENSOANG00000043116)	MBIP (ENSOANG00000014064)	BRMS1L (ENSOANG00000014063)	RALGAPA1 (ENSOANG00000014058)	NFKBIA (ENSOANG00000043305)	PSMA6 (ENSOANG00000014057)	PRORP (ENSOANG00000049280)	PPP2R3C (ENSOANG00000036349)	FAM177A1 (ENSOANG00000014053)	SRP54 (ENSOANG00000041370)	ENSOANG00000014050	BAZ1A (ENSOANG00000014049)	SNX6 (ENSOANG00000042198)	EAPP (ENSOANG00000049496) #22	SPTSSA (ENSOANG00000043145)	EGLN3 (ENSOANG00000037294) #23	ENSOANG00000049968	NPAS3 (ENSOANG00000014044) #24	AKAP6 (ENSOANG00000014040) #25	ARHGAP5 (ENSOANG00000014039) #26	NUBPL (ENSOANG00000014034) #28	DTD2 (ENSOANG00000014038) #29	HEATR5A (ENSOANG00000014036) #30	HECTD1 (ENSOANG00000014033) #31	AP4S1 (ENSOANG00000039192) #32	STRN3 (ENSOANG00000014029) #33	COCH (ENSOANG00000014025) #35	SCFD1 (ENSOANG00000014020) #37	G2E3 (ENSOANG00000014019)