Tetrapoda	ANCESTRAL SPECIES	51	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000166431	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a	ENSGT00950000183024.a.b.a
Amniota	ANCESTRAL SPECIES	8	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000166431	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Mammalia	ANCESTRAL SPECIES	26	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000166431	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Theria	ANCESTRAL SPECIES	14	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000166431	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Eutheria	ANCESTRAL SPECIES	12	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000166431	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00940000158921	ENSGT01070000257281	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000166431	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT01070000257281	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000166431	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a
Primates	ANCESTRAL SPECIES	2	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a
Haplorrhini	ANCESTRAL SPECIES	12	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00560000078697	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940.pb #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a
Catarrhini	ANCESTRAL SPECIES	9	ENSGT00940000161610	ENSGT00940000161107	ENSGT00560000078697	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940.pb #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00910000147374	ENSGT00940000154553.a.b.e #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B
Cercopithecidae	ANCESTRAL SPECIES	7	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00560000078697	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940.pb #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00910000147374	ENSGT00940000154553.a.b.e #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00390000012569.a.fb.a.a	ENSGT00940000162733 #8	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00390000012569.a.fb.b.b.b.b	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940.pb #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00910000147374	ENSGT00940000154553.a.b.e #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B.x	ENSGT00950000183095.a.a
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00390000012569.a.fb.b.b.b.b	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000002414.`b.a.a.f	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940.pb #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00910000147374	ENSGT00940000154553.a.b.e #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B.x	ENSGT00950000183095.a.a
Macaca	ANCESTRAL SPECIES	1	ENSGT00560000078697	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940.pb #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00910000147374	ENSGT00940000154553.a.b.e #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B.x	ENSGT00950000183095.a.a
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00940000161107	ENSGT00560000078697	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940.pb #21	ENSGT00390000001332 #22	ENSGT00940000164709.a.b.b.a.b.b.a.a.b.a.a.a.a.b.b.b #23	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b.e #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B.x	ENSGT00950000183095.a.a	ENSGT00940000159386
Crab-eating macaque	MODERN SPECIES	17	INSM2 (ENSMFAG00000009696) #7	NFKBIA (ENSMFAG00000017605) #8	PSMA6 (ENSMFAG00000043654) #9	ENSMFAG00000058533 #10	PRORP (ENSMFAG00000001453) #11	PPP2R3C (ENSMFAG00000033038) #12	FAM177A1 (ENSMFAG00000062033) #13	SRP54 (ENSMFAG00000044371) #14	ENSMFAG00000054611 #15	BAZ1A (ENSMFAG00000043129) #16	ENSMFAG00000049174 #17	CFL2 (ENSMFAG00000001352) #18	ENSMFAG00000062650 #19	ENSMFAG00000053943 #20	SNX6 (ENSMFAG00000040770) #21	EAPP (ENSMFAG00000002843) #22	ENSMFAG00000062453 #23	ENSMFAG00000060787 #24	ENSMFAG00000030913 #25	SPTSSA (ENSMFAG00000048755) #26	ENSMFAG00000058983 #27	EGLN3 (ENSMFAG00000036942) #28	ENSMFAG00000057891 #29	NPAS3 (ENSMFAG00000043431) #30	ENSMFAG00000000440 #31	AKAP6 (ENSMFAG00000040818) #32	ARHGAP5 (ENSMFAG00000000350) #33	NUBPL (ENSMFAG00000038751) #34	ENSMFAG00000054026 #35	ENSMFAG00000062632 #36	GPR33 (ENSMFAG00000038012) #37
Rhesus	MODERN SPECIES	17	ENSMMUG00000041260	MBIP (ENSMMUG00000004856)	BRMS1L (ENSMMUG00000010665)	INSM2 (ENSMMUG00000016483) #7	RALGAPA1 (ENSMMUG00000016487)	NFKBIA (ENSMMUG00000020374) #8	PSMA6 (ENSMMUG00000016544) #9	PRORP (ENSMMUG00000019875) #11	PPP2R3C (ENSMMUG00000003530) #12	FAM177A1 (ENSMMUG00000060802) #13	SRP54 (ENSMMUG00000015073) #14	BAZ1A (ENSMMUG00000058073) #16	CFL2 (ENSMMUG00000039560) #18	SNX6 (ENSMMUG00000012576) #21	ENSMMUG00000054661 ##15	EAPP (ENSMMUG00000056506) #22	ENSMMUG00000054885 #23	ENSMMUG00000018813 ##24	SPTSSA (ENSMMUG00000049364) #26	ENSMMUG00000057166	ENSMMUG00000064654 ##10	EGLN3 (ENSMMUG00000000040) #28	ENSMMUG00000054677	NPAS3 (ENSMMUG00000014839) #30	ENSMMUG00000062990 ##31	AKAP6 (ENSMMUG00000015128) #32	ARHGAP5 (ENSMMUG00000016346) #33	ENSMMUG00000056320	ENSMMUG00000054094	NUBPL (ENSMMUG00000012726) #34	GPR33 (ENSMMUG00000015703) #37
Pig-tailed macaque	MODERN SPECIES	548	ENSMNEG00000041330	BRMS1L (ENSMNEG00000043819)	ENSMNEG00000044293	ENSMNEG00000000324	RALGAPA1 (ENSMNEG00000028557)	ENSMNEG00000000902	NFKBIA (ENSMNEG00000039580) #8	ENSMNEG00000036798	ENSMNEG00000010776 #9	PRORP (ENSMNEG00000029194) #11	PPP2R3C (ENSMNEG00000023978) #12	SRP54 (ENSMNEG00000006947) #14	BAZ1A (ENSMNEG00000043110) #16	CFL2 (ENSMNEG00000039241) #18	SNX6 (ENSMNEG00000044189) #21	EAPP (ENSMNEG00000034819) #22	SPTSSA (ENSMNEG00000041970) #26	EGLN3 (ENSMNEG00000034405) #28	ENSMNEG00000019306 #29	NPAS3 (ENSMNEG00000034614) #30	AKAP6 (ENSMNEG00000039858) #32	ENSMNEG00000011661	ARHGAP5 (ENSMNEG00000044390) #33	ENSMNEG00000027078	NUBPL (ENSMNEG00000031679) #34	DTD2 (ENSMNEG00000045027)	HEATR5A (ENSMNEG00000034513)	HECTD1 (ENSMNEG00000001350)	ENSMNEG00000040344	STRN3 (ENSMNEG00000032023)	COCH (ENSMNEG00000031522)
Cercopithecinae_b	ANCESTRAL SPECIES	8	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00390000012569.a.fb.b.b.b.b	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000002414.`b.a.a.f	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940.pb #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00910000147374	ENSGT00940000154553.a.b.e #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B.x.b	ENSGT00950000183095.a.a
Olive baboon	MODERN SPECIES	17	MBIP (ENSPANG00000020627)	ENSPANG00000039092	ENSPANG00000037543	BRMS1L (ENSPANG00000015154)	RALGAPA1 (ENSPANG00000014246)	INSM2 (ENSPANG00000021247) #7	NFKBIA (ENSPANG00000021245) #8	PSMA6 (ENSPANG00000029375) #9	PRORP (ENSPANG00000025053) #11	PPP2R3C (ENSPANG00000024268) #12	FAM177A1 (ENSPANG00000038043) #13	SRP54 (ENSPANG00000023853) #14	BAZ1A (ENSPANG00000021332) #16	CFL2 (ENSPANG00000021779) #18	ENSPANG00000022563 #21	EAPP (ENSPANG00000018424) #22	SPTSSA (ENSPANG00000044993) #26	ENSPANG00000039055 ##10	EGLN3 (ENSPANG00000047484) #28	NPAS3 (ENSPANG00000021333) #30	AKAP6 (ENSPANG00000022397) #32	ENSPANG00000038010 ##31	ENSPANG00000038472	ARHGAP5 (ENSPANG00000024272) #33	ENSPANG00000047627	NUBPL (ENSPANG00000021781) #34	GPR33 (ENSPANG00000021666) #37	DTD2 (ENSPANG00000021336)	HEATR5A (ENSPANG00000000801)	HECTD1 (ENSPANG00000017149)	ENSPANG00000017427
Cercopithecinae_d	ANCESTRAL SPECIES	101																ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00910000147374	ENSGT00940000154553.a.b.e #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B.x.b	ENSGT00950000183095.a.a	ENSGT00940000159386
Drill	MODERN SPECIES	1086																EAPP (ENSMLEG00000042797) #22	TACR3 (ENSMLEG00000044107)	CENPE (ENSMLEG00000028666)	BDH2 (ENSMLEG00000039239)	SLC9B2 (ENSMLEG00000040747)	SLC9B1 (ENSMLEG00000030173)	CISD2 (ENSMLEG00000039455)	ENSMLEG00000036393	ENSMLEG00000038269	ENSMLEG00000030905	MANBA (ENSMLEG00000036247)	ENSMLEG00000042292	NFKB1 (ENSMLEG00000030561)	SLC39A8 (ENSMLEG00000022871)
Sooty mangabey	MODERN SPECIES	186																EAPP (ENSCATG00000044341) #22	SPTSSA (ENSCATG00000029208) #26	ENSCATG00000030363 #25	EGLN3 (ENSCATG00000040041) #28	ENSCATG00000043412 #29	NPAS3 (ENSCATG00000029945) #30	AKAP6 (ENSCATG00000037210) #32	ENSCATG00000018768	ARHGAP5 (ENSCATG00000035037) #33	ENSCATG00000015897	NUBPL (ENSCATG00000033880) #34	DTD2 (ENSCATG00000031883)	HEATR5A (ENSCATG00000032282)	HECTD1 (ENSCATG00000032933)	ENSCATG00000035780	STRN3 (ENSCATG00000022375)
Vervet Monkey	MODERN SPECIES	16	ENSCSAG00000015474	MBIP (ENSCSAG00000015484)	BRMS1L (ENSCSAG00000015489)	RALGAPA1 (ENSCSAG00000015500)	INSM2 (ENSCSAG00000019401) #7	ENSCSAG00000015517	NFKBIA (ENSCSAG00000015526) #8	PSMA6 (ENSCSAG00000015552) #9	PRORP (ENSCSAG00000015561) #11	PPP2R3C (ENSCSAG00000015566) #12	FAM177A1 (ENSCSAG00000015569) #13	SRP54 (ENSCSAG00000015575) #14	BAZ1A (ENSCSAG00000015625) #16	ENSCSAG00000015638 #18	SNX6 (ENSCSAG00000015642) #21	EAPP (ENSCSAG00000015646) #22	SPTSSA (ENSCSAG00000015651) #26	EGLN3 (ENSCSAG00000015653) #28	NPAS3 (ENSCSAG00000015658) #30	ENSCSAG00000019400 #31	AKAP6 (ENSCSAG00000015666) #32	ARHGAP5 (ENSCSAG00000015675) #33	ENSCSAG00000015689	NUBPL (ENSCSAG00000015694) #34	GPR33 (ENSCSAG00000019399) #37	DTD2 (ENSCSAG00000015699)	HEATR5A (ENSCSAG00000015711)	HECTD1 (ENSCSAG00000015728)	STRN3 (ENSCSAG00000015737)	COCH (ENSCSAG00000015743)	SCFD1 (ENSCSAG00000015756)
Rhinopithecus	ANCESTRAL SPECIES	225																ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b.e #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00930000150941.x.b.a
Black snub-nosed monkey	MODERN SPECIES	1258																EAPP (ENSRBIG00000044230) #22	SPTSSA (ENSRBIG00000039846) #26	EGLN3 (ENSRBIG00000039961) #28	ENSRBIG00000019858 #29	NPAS3 (ENSRBIG00000032686) #30	ENSRBIG00000032788	AKAP6 (ENSRBIG00000038045) #32	ARHGAP5 (ENSRBIG00000016020) #33	ENSRBIG00000038307	NUBPL (ENSRBIG00000033232) #34	DTD2 (ENSRBIG00000031412)	HEATR5A (ENSRBIG00000035494)	HECTD1 (ENSRBIG00000014027)	ENSRBIG00000031706	STRN3 (ENSRBIG00000034106)	COCH (ENSRBIG00000024567)
Golden snub-nosed monkey	MODERN SPECIES	1658																EAPP (ENSRROG00000029693) #22	ENSRROG00000039005 #25	SPTSSA (ENSRROG00000031858) #26
Hominoidea	ANCESTRAL SPECIES	12	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00390000012569.a.fb.a.a	ENSGT00940000162733 #8	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940.pb #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00910000147374	ENSGT00940000154553.a.b.e #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B
Hominidae	ANCESTRAL SPECIES	14	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00390000012569.a.fb.a.a	ENSGT00940000162733 #8	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940.pb #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00910000147374	ENSGT00940000154553.a.b.e #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	12	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00390000012569.a.fb.a.a	ENSGT00940000162733 #8	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00940000158135.i #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940.pb #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00910000147374	ENSGT00940000154553.a.b.e #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a
Gorilla	MODERN SPECIES	5	ENSGGOG00000037483	RALGAPA1 (ENSGGOG00000008354)	INSM2 (ENSGGOG00000041074) #7	ENSGGOG00000039181	NFKBIA (ENSGGOG00000009397) #8	ENSGGOG00000036672	PSMA6 (ENSGGOG00000013201) #9	PRORP (ENSGGOG00000012248) #11	ENSGGOG00000012223 #12	ENSGGOG00000041904	SRP54 (ENSGGOG00000002926) #14	ENSGGOG00000028571	ENSGGOG00000008915 #16	CFL2 (ENSGGOG00000038032) #18	SNX6 (ENSGGOG00000007659) #21	EAPP (ENSGGOG00000007784) #22	EGLN3 (ENSGGOG00000014900) #28	ENSGGOG00000037716 #29	ENSGGOG00000022941 #30	ENSGGOG00000041161	AKAP6 (ENSGGOG00000025608) #32	ENSGGOG00000042101	ARHGAP5 (ENSGGOG00000002593) #33	NUBPL (ENSGGOG00000009764) #34	GPR33 (ENSGGOG00000026905) #37	DTD2 (ENSGGOG00000043676)	HEATR5A (ENSGGOG00000000655)	HECTD1 (ENSGGOG00000026552)	ENSGGOG00000003198	STRN3 (ENSGGOG00000006096)	ENSGGOG00000042724
Homo/Pan group	ANCESTRAL SPECIES	11	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00390000012569.a.fb.a.a	ENSGT00940000162733 #8	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00940000158135.i #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940.pb #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b.e #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Pan	ANCESTRAL SPECIES	8	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00390000012569.a.fb.a.a	ENSGT00940000162733 #8	ENSGT00390000017839.o.b.b.a.a.a.a	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00550000074824 #14	ENSGT00940000158135.i #16	ENSGT00390000006922.m.a ##17	ENSGT00950000183000.c.b #18	ENSGT00940000154940.pb #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b.e #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Chimpanzee	MODERN SPECIES	5	MBIP (ENSPTRG00000006273)	BRMS1L (ENSPTRG00000006272)	RALGAPA1 (ENSPTRG00000006268)	INSM2 (ENSPTRG00000006267) #7	ENSPTRG00000041063	NFKBIA (ENSPTRG00000006265) #8	ENSPTRG00000043789	PSMA6 (ENSPTRG00000006264) #9	PRORP (ENSPTRG00000006263) #11	PPP2R3C (ENSPTRG00000006261) #12	FAM177A1 (ENSPTRG00000006259) #14	BAZ1A (ENSPTRG00000006255) #16	ENSPTRG00000051817 ##17	CFL2 (ENSPTRG00000006254) #18	SNX6 (ENSPTRG00000006253) #21	EAPP (ENSPTRG00000006252) #22	SPTSSA (ENSPTRG00000006251) #26	EGLN3 (ENSPTRG00000006250) #28	ENSPTRG00000043856 #29	NPAS3 (ENSPTRG00000006249) #30	AKAP6 (ENSPTRG00000006247) #32	ARHGAP5 (ENSPTRG00000006246) #33	NUBPL (ENSPTRG00000006245) #34	GPR33 (ENSPTRG00000032557) #37	DTD2 (ENSPTRG00000006244)	HEATR5A (ENSPTRG00000006241)	HECTD1 (ENSPTRG00000006240)	AP4S1 (ENSPTRG00000006239)	STRN3 (ENSPTRG00000006238)	COCH (ENSPTRG00000006237)	ENSPTRG00000047778
Bonobo	MODERN SPECIES	5	BRMS1L (ENSPPAG00000029997)	ENSPPAG00000027690	RALGAPA1 (ENSPPAG00000038560)	ENSPPAG00000013978 #7	ENSPPAG00000039340	ENSPPAG00000041784 #8	ENSPPAG00000006620	ENSPPAG00000024947 #9	PRORP (ENSPPAG00000040873) #11	PPP2R3C (ENSPPAG00000030301) #12	SRP54 (ENSPPAG00000017434) #14	BAZ1A (ENSPPAG00000026030) #16	ENSPPAG00000008100 ##17	CFL2 (ENSPPAG00000007558) #18	SNX6 (ENSPPAG00000037141) #21	EAPP (ENSPPAG00000030095) #22	EGLN3 (ENSPPAG00000018135) #28	ENSPPAG00000004989 #29	NPAS3 (ENSPPAG00000028096) #30	AKAP6 (ENSPPAG00000036668) #32	ARHGAP5 (ENSPPAG00000037127) #33	ENSPPAG00000034553 #34	ENSPPAG00000033459	GPR33 (ENSPPAG00000016765) #37	DTD2 (ENSPPAG00000029393)	HEATR5A (ENSPPAG00000034508)	HECTD1 (ENSPPAG00000036559)	ENSPPAG00000041450	STRN3 (ENSPPAG00000028044)	COCH (ENSPPAG00000042223)	ENSPPAG00000038553
Human	MODERN SPECIES	5	NKX2-8 (ENSG00000136327)	NKX2-1 (ENSG00000136352)	MBIP (ENSG00000151332)	BRMS1L (ENSG00000100916)	RALGAPA1 (ENSG00000174373)	INSM2 (ENSG00000168348) #7	NFKBIA (ENSG00000100906) #8	PSMA6 (ENSG00000100902) #9	PRORP (ENSG00000100890) #11	PPP2R3C (ENSG00000092020) #12	FAM177A1 (ENSG00000151327) #13	SRP54 (ENSG00000100883) #14	BAZ1A (ENSG00000198604) #16	CFL2 (ENSG00000165410) #18	SNX6 (ENSG00000129515) #21	EAPP (ENSG00000129518) #22	SPTSSA (ENSG00000165389) #26	EGLN3 (ENSG00000129521) #28	NPAS3 (ENSG00000151322) #30	AKAP6 (ENSG00000151320) #32	ARHGAP5 (ENSG00000100852) #33	NUBPL (ENSG00000151413) #34	GPR33 (ENSG00000214943) #37	DTD2 (ENSG00000129480)	ENSG00000203546	HEATR5A (ENSG00000129493)	HECTD1 (ENSG00000092148)	AP4S1 (ENSG00000100478)	STRN3 (ENSG00000196792)	COCH (ENSG00000100473)	SCFD1 (ENSG00000092108)
Orangutan	MODERN SPECIES	5	ENSPPYG00000041488	MBIP (ENSPPYG00000005748)	BRMS1L (ENSPPYG00000005747)	RALGAPA1 (ENSPPYG00000005746)	INSM2 (ENSPPYG00000005745) #7	ENSPPYG00000034833 #8	ENSPPYG00000005743 #8	PSMA6 (ENSPPYG00000029719) #9	PRORP (ENSPPYG00000005742) #11	PPP2R3C (ENSPPYG00000005741) #12	FAM177A1 (ENSPPYG00000005740) #13	SRP54 (ENSPPYG00000005739) #14	BAZ1A (ENSPPYG00000005738) #16	CFL2 (ENSPPYG00000005737) #18	SNX6 (ENSPPYG00000005736) #21	EAPP (ENSPPYG00000005735) #22	SPTSSA (ENSPPYG00000005733) #26	EGLN3 (ENSPPYG00000005732) #28	NPAS3 (ENSPPYG00000005731) #30	AKAP6 (ENSPPYG00000005730) #32	ARHGAP5 (ENSPPYG00000005729) #33	NUBPL (ENSPPYG00000005727) #34	DTD2 (ENSPPYG00000036770)	HEATR5A (ENSPPYG00000005725)	HECTD1 (ENSPPYG00000005724)	ENSPPYG00000005723	STRN3 (ENSPPYG00000005722)	COCH (ENSPPYG00000005721)	SCFD1 (ENSPPYG00000005720)	G2E3 (ENSPPYG00000005719)	PRKD1 (ENSPPYG00000005718)
Gibbon	MODERN SPECIES	10	ENSNLEG00000003924	MBIP (ENSNLEG00000003876)	BRMS1L (ENSNLEG00000032667)	RALGAPA1 (ENSNLEG00000003739)	INSM2 (ENSNLEG00000003723) #7	NFKBIA (ENSNLEG00000003728) #8	ENSNLEG00000003724	ENSNLEG00000028320 #9	ENSNLEG00000032079	PRORP (ENSNLEG00000003691) #11	PPP2R3C (ENSNLEG00000003591) #12	SRP54 (ENSNLEG00000003496) #14	BAZ1A (ENSNLEG00000003440) #16	CFL2 (ENSNLEG00000003417) #18	SNX6 (ENSNLEG00000003310) #21	EAPP (ENSNLEG00000034702) #22	SPTSSA (ENSNLEG00000029839) #26	EGLN3 (ENSNLEG00000003247) #28	ENSNLEG00000032145	ENSNLEG00000032055 #30	AKAP6 (ENSNLEG00000003187) #32	ENSNLEG00000003168 #33	ENSNLEG00000028683	NUBPL (ENSNLEG00000003141) #34	DTD2 (ENSNLEG00000034317)	ENSNLEG00000027838	RIOX1 (ENSNLEG00000003130)	HEATR4 (ENSNLEG00000003060)	NUMB (ENSNLEG00000002944)	PAPLN (ENSNLEG00000002925)	PSEN1 (ENSNLEG00000002855)
Platyrrhini	DUPLICATION
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00390000001332.k.a #22
Cebidae	ANCESTRAL SPECIES																	ENSGT00390000001332.k.a #22
Cebidae_a	ANCESTRAL SPECIES	4	ENSGT00940000161107	ENSGT00560000078697	ENSGT00510000047831	ENSGT00940000154191.i.a.r.b	ENSGT00940000158921.g	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940.pb #21	ENSGT00390000001332.k.a #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT01030000234542.b.a.a.b.a.b.k.b	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845
Capuchin	MODERN SPECIES	496													BAZ1A (ENSCCAG00000028091) #16	CFL2 (ENSCCAG00000037328) #18	SNX6 (ENSCCAG00000033377) #21	ENSCCAG00000020846 #22	SPESP1 (ENSCCAG00000035908)	ENSCCAG00000030222	ENSCCAG00000018938	CORO2B (ENSCCAG00000009202)	ITGA11 (ENSCCAG00000035460)	FEM1B (ENSCCAG00000022866)	CLN6 (ENSCCAG00000033490)	ENSCCAG00000027951	CALML4 (ENSCCAG00000024372)	PIAS1 (ENSCCAG00000025457)	SKOR1 (ENSCCAG00000026202)
Mas night monkey	MODERN SPECIES	819	NKX2-8 (ENSANAG00000023511)	NKX2-1 (ENSANAG00000028255)	ENSANAG00000023382	MBIP (ENSANAG00000027296)	BRMS1L (ENSANAG00000026406)	RALGAPA1 (ENSANAG00000029085)	NFKBIA (ENSANAG00000030609) #8	ENSANAG00000020043 #9	PRORP (ENSANAG00000029895) #11	PPP2R3C (ENSANAG00000019227) #12	SRP54 (ENSANAG00000022133) #14	BAZ1A (ENSANAG00000009176) #16	CFL2 (ENSANAG00000001737) #18	SNX6 (ENSANAG00000019855) #21	ENSANAG00000030653	ENSANAG00000021068 #22	ENSANAG00000024247	EGLN3 (ENSANAG00000037222) #28	ENSANAG00000020399	NPAS3 (ENSANAG00000023028) #30	ENSANAG00000020942	AKAP6 (ENSANAG00000034900) #32	ARHGAP5 (ENSANAG00000037055) #33	NUBPL (ENSANAG00000036864) #34	DTD2 (ENSANAG00000036862)	ENSANAG00000033419	ENSANAG00000035920	HECTD1 (ENSANAG00000037367)	AP4S1 (ENSANAG00000026444)	STRN3 (ENSANAG00000026168)	COCH (ENSANAG00000029746)
Platyrrhini	ANCESTRAL SPECIES	6	ENSGT00940000156910	ENSGT00510000046843.b	ENSGT00430000032851	ENSGT00410000029301	ENSGT00430000033088	ENSGT00950000182952.C	ENSGT00940000158382	ENSGT00940000158177.b	ENSGT00940000158968	ENSGT00940000157574	ENSGT00730000111529	ENSGT00940000158686	ENSGT00940000160413	ENSGT00940000158342.b	ENSGT00390000018272	ENSGT00390000001332.k.b #22	ENSGT00940000157538	ENSGT00730000111039.C	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574	ENSGT00950000182839.A.c	ENSGT00940000158251	ENSGT00940000162858	ENSGT00940000163725	ENSGT00390000014620.j	ENSGT00940000157277	ENSGT00940000156144	ENSGT00530000063745.b	ENSGT00390000006546
Mas night monkey	MODERN SPECIES	844	PLEKHG7 (ENSANAG00000037547)	ENSANAG00000036770	ENSANAG00000020232	ENSANAG00000036734	BTG1 (ENSANAG00000037621)	ENSANAG00000037565	DCN (ENSANAG00000022968)	LUM (ENSANAG00000020478)	KERA (ENSANAG00000037464)	EPYC (ENSANAG00000037744)	ENSANAG00000018323	ATP2B1 (ENSANAG00000027760)	POC1B (ENSANAG00000023816)	DUSP6 (ENSANAG00000037906)	KITLG (ENSANAG00000001756)	ENSANAG00000022268 #22	TMTC3 (ENSANAG00000021779)	CEP290 (ENSANAG00000021204)	C12orf29 (ENSANAG00000023232)
Cebidae	ANCESTRAL SPECIES	2	ENSGT00390000003156.a.b.k.a.b	ENSGT00940000156910	ENSGT00510000046843.b	ENSGT00430000033088	ENSGT00410000029301	ENSGT00950000182952.C	ENSGT00940000158382	ENSGT00940000158177.b	ENSGT00940000158968	ENSGT00940000157574	ENSGT00730000111529	ENSGT00940000158686	ENSGT00940000160413	ENSGT00940000158342.b	ENSGT00390000018272	ENSGT00390000001332.k.b #22	ENSGT00940000157538	ENSGT00730000111039.C	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574	ENSGT00950000182839.A.c	ENSGT00940000158251	ENSGT00940000162858	ENSGT00940000163725	ENSGT00390000014620.j	ENSGT00940000157277	ENSGT00940000156144	ENSGT00530000063745.b	ENSGT00390000006546
Cebidae_a	ANCESTRAL SPECIES	8	ENSGT00390000003156.a.b.k.a.b	ENSGT00940000156910	ENSGT00510000046843.b	ENSGT00430000033088	ENSGT00410000029301	ENSGT00950000182952.C	ENSGT00940000158382	ENSGT00940000158177.b	ENSGT00940000158968	ENSGT00940000157574	ENSGT00730000111529	ENSGT00940000158686	ENSGT00940000160413	ENSGT00940000158342.b	ENSGT00390000018272	ENSGT00390000001332.k.b #22	ENSGT00940000157538	ENSGT00730000111039.C	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352	ENSGT00640000091574	ENSGT00950000182839.A.c	ENSGT00940000158251	ENSGT00940000162858	ENSGT00940000163725	ENSGT00390000014620.j	ENSGT00940000157277	ENSGT00390000008708.o.a	ENSGT00940000156144	ENSGT00530000063745.b
Bolivian squirrel monkey	MODERN SPECIES	67	PLEKHG7 (ENSSBOG00000035263)	ENSSBOG00000027119	ENSSBOG00000029330	BTG1 (ENSSBOG00000031360)	DCN (ENSSBOG00000032365)	LUM (ENSSBOG00000030254)	KERA (ENSSBOG00000020371)	EPYC (ENSSBOG00000026508)	CCER1 (ENSSBOG00000001585)	ENSSBOG00000030149	ATP2B1 (ENSSBOG00000022877)	POC1B (ENSSBOG00000023395)	DUSP6 (ENSSBOG00000022133)	ENSSBOG00000021475	KITLG (ENSSBOG00000026788)	ENSSBOG00000025089 #22	TMTC3 (ENSSBOG00000027049)	CEP290 (ENSSBOG00000024214)	C12orf29 (ENSSBOG00000033321)	C12orf50 (ENSSBOG00000016644)	MGAT4C (ENSSBOG00000025097)	NTS (ENSSBOG00000032612)	RASSF9 (ENSSBOG00000030703)	ALX1 (ENSSBOG00000028789)	LRRIQ1 (ENSSBOG00000024808)	TSPAN19 (ENSSBOG00000018936)	SLC6A15 (ENSSBOG00000036273)	ENSSBOG00000035574	ENSSBOG00000032046	TMTC2 (ENSSBOG00000024696)	ENSSBOG00000025592
Platyrrhini	ANCESTRAL SPECIES	4	ENSGT00940000161107	ENSGT00560000078697	ENSGT00510000047831	ENSGT00940000158921.g	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940.pb #21	ENSGT00390000001332.l #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT01030000234542.b.a.a.b.a.b.k.b	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Cebidae	ANCESTRAL SPECIES	3	ENSGT00940000161610	ENSGT00940000161107	ENSGT00560000078697	ENSGT00510000047831	ENSGT00940000158921.g	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940.pb #21	ENSGT00390000001332.l #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT01030000234542.b.a.a.b.a.b.k.b	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Marmoset	MODERN SPECIES	1	INSM2 (ENSCJAG00000006816) #7	ENSCJAG00000081814	ENSCJAG00000078340	ENSCJAG00000006806	ENSCJAG00000073389	ENSCJAG00000071935	PSMA6 (ENSCJAG00000041141) #9	PRORP (ENSCJAG00000006750) #11	PPP2R3C (ENSCJAG00000041694) #12	ENSCJAG00000062861	FAM177A1 (ENSCJAG00000069586) #13	SRP54 (ENSCJAG00000006581) #14	BAZ1A (ENSCJAG00000006421) #16	CFL2 (ENSCJAG00000041665) #18	SNX6 (ENSCJAG00000044761) #21	EAPP (ENSCJAG00000042239) #22	ENSCJAG00000032302	SPTSSA (ENSCJAG00000086959) #26	EGLN3 (ENSCJAG00000005424) #28	NPAS3 (ENSCJAG00000047425) #30	AKAP6 (ENSCJAG00000005474) #32	ARHGAP5 (ENSCJAG00000005538) #33	NUBPL (ENSCJAG00000005582) #34	GPR33 (ENSCJAG00000035428) #37	DTD2 (ENSCJAG00000073851)	ENSCJAG00000075200	HEATR5A (ENSCJAG00000005593)	ENSCJAG00000073672	HECTD1 (ENSCJAG00000005631)	AP4S1 (ENSCJAG00000005786)	ENSCJAG00000071091
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00390000001332.l #22
Capuchin	MODERN SPECIES	132					PTGIS (ENSCCAG00000028852)	KCNB1 (ENSCCAG00000022245)	ZNFX1 (ENSCCAG00000027959)	DDX27 (ENSCCAG00000029782)	STAU1 (ENSCCAG00000034339)	CSE1L (ENSCCAG00000014373)	ARFGEF2 (ENSCCAG00000035477)	PREX1 (ENSCCAG00000020464)	ENSCCAG00000034261	SULF2 (ENSCCAG00000021288)	NCOA3 (ENSCCAG00000018891)	ENSCCAG00000031328 #22	ENSCCAG00000020080	ZMYND8 (ENSCCAG00000034996)	EYA2 (ENSCCAG00000006439)	SLC2A10 (ENSCCAG00000024883)	TP53RK (ENSCCAG00000025781)	ENSCCAG00000032665	SLC13A3 (ENSCCAG00000023479)	OCSTAMP (ENSCCAG00000032955)	ZNF334 (ENSCCAG00000037086)	ELMO2 (ENSCCAG00000021611)	SLC35C2 (ENSCCAG00000033921)	CDH22 (ENSCCAG00000031781)	CD40 (ENSCCAG00000031327)	NCOA5 (ENSCCAG00000030312)	SLC12A5 (ENSCCAG00000031231)
Bolivian squirrel monkey	MODERN SPECIES	50	BIRC2 (ENSSBOG00000034069)	BIRC3 (ENSSBOG00000031187)	YAP1 (ENSSBOG00000027497)	ENSSBOG00000036077	CFAP300 (ENSSBOG00000033758)	CEP126 (ENSSBOG00000028647)	ANGPTL5 (ENSSBOG00000031015)	ENSSBOG00000032893	TRPC6 (ENSSBOG00000019836)	ENSSBOG00000021319	ENSSBOG00000023108	ENSSBOG00000023277	PGR (ENSSBOG00000013714)	ARHGAP42 (ENSSBOG00000035822)	CNTN5 (ENSSBOG00000023228)	ENSSBOG00000018311 #22	CCDC82 (ENSSBOG00000027897)	MAML2 (ENSSBOG00000031458)	MTMR2 (ENSSBOG00000012973)	CEP57 (ENSSBOG00000030610)	FAM76B (ENSSBOG00000017588)
Mas night monkey	MODERN SPECIES	835																ENSANAG00000022457 #22	ENSANAG00000022652	IZUMO3 (ENSANAG00000021921)	ELAVL2 (ENSANAG00000032553)	ENSANAG00000029023	DMRTA1 (ENSANAG00000021248)	CDKN2B (ENSANAG00000018770)	CDKN2A (ENSANAG00000025540)	ENSANAG00000019784	MTAP (ENSANAG00000029387)	IFNE (ENSANAG00000027745)	KLHL9 (ENSANAG00000033732)	ENSANAG00000031381	HACD4 (ENSANAG00000027847)	FOCAD (ENSANAG00000029314)	MLLT3 (ENSANAG00000032095)
Tarsier	MODERN SPECIES	6381																EAPP (ENSTSYG00000006040) #22	ENSTSYG00000025976	ENSTSYG00000029878	ENSTSYG00000030381	EPB41L2 (ENSTSYG00000004773)	SMLR1 (ENSTSYG00000029108)
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Lemuriformes	ANCESTRAL SPECIES	8																ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Mouse lemur	MODERN SPECIES	22	ENSMICG00000032621	ENSMICG00000026534	CGRRF1 (ENSMICG00000047854)	SAMD4A (ENSMICG00000016212)	GCH1 (ENSMICG00000016234)	WDHD1 (ENSMICG00000016239)	SOCS4 (ENSMICG00000047239)	MAPK1IP1L (ENSMICG00000035738)	LGALS3 (ENSMICG00000016283)	DLGAP5 (ENSMICG00000016289)	ENSMICG00000042184	ENSMICG00000041981	ATG14 (ENSMICG00000000939)	TBPL2 (ENSMICG00000000943)	KTN1 (ENSMICG00000032329)	EAPP (ENSMICG00000044807) #22	SPTSSA (ENSMICG00000046623) #26	ENSMICG00000032213	ENSMICG00000047011	EGLN3 (ENSMICG00000000618) #28	NPAS3 (ENSMICG00000031841) #30	AKAP6 (ENSMICG00000027865) #32	ARHGAP5 (ENSMICG00000007275) #33	NUBPL (ENSMICG00000034340) #34	ENSMICG00000027167	DTD2 (ENSMICG00000030584)	HEATR5A (ENSMICG00000007619)	HECTD1 (ENSMICG00000034057)	AP4S1 (ENSMICG00000003359)	STRN3 (ENSMICG00000026845)	COCH (ENSMICG00000003344)
Lemuriformes_a	ANCESTRAL SPECIES	194																ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Coquerels sifaka	MODERN SPECIES	389																EAPP (ENSPCOG00000021389) #22	SPTSSA (ENSPCOG00000027257) #26	ENSPCOG00000015194 #28	NPAS3 (ENSPCOG00000020941) #30	AKAP6 (ENSPCOG00000013700) #32	ARHGAP5 (ENSPCOG00000024862) #33	ENSPCOG00000015979	NUBPL (ENSPCOG00000022890) #34	DTD2 (ENSPCOG00000017568)	HEATR5A (ENSPCOG00000022777)	HECTD1 (ENSPCOG00000020200)	ENSPCOG00000028456	AP4S1 (ENSPCOG00000016646)	STRN3 (ENSPCOG00000001434)	COCH (ENSPCOG00000023301)	ENSPCOG00000012773
Greater bamboo lemur	MODERN SPECIES	1334																EAPP (ENSPSMG00000008618) #22	SPTSSA (ENSPSMG00000008591) #26	EGLN3 (ENSPSMG00000008578) #28
Bushbaby	MODERN SPECIES	167	NKX2-1 (ENSOGAG00000028624)	MBIP (ENSOGAG00000013109)	BRMS1L (ENSOGAG00000016974)	RALGAPA1 (ENSOGAG00000014961)	INSM2 (ENSOGAG00000024855) #7	NFKBIA (ENSOGAG00000003716) #8	PSMA6 (ENSOGAG00000008492) #9	PRORP (ENSOGAG00000024550) #11	PPP2R3C (ENSOGAG00000008489) #12	FAM177A1 (ENSOGAG00000008488) #13	SRP54 (ENSOGAG00000012188) #14	ENSOGAG00000031729	BAZ1A (ENSOGAG00000002234) #16	CFL2 (ENSOGAG00000032321) #18	SNX6 (ENSOGAG00000008020) #21	EAPP (ENSOGAG00000012492) #22	SPTSSA (ENSOGAG00000030285) #26	ENSOGAG00000001254	EGLN3 (ENSOGAG00000014893) #28	NPAS3 (ENSOGAG00000014886) #30	AKAP6 (ENSOGAG00000001808) #32	ARHGAP5 (ENSOGAG00000029734) #33	NUBPL (ENSOGAG00000011550) #34	DTD2 (ENSOGAG00000013060)	HEATR5A (ENSOGAG00000013052)	AP4S1 (ENSOGAG00000004703)	STRN3 (ENSOGAG00000004698)	COCH (ENSOGAG00000004695)	SCFD1 (ENSOGAG00000017096)	G2E3 (ENSOGAG00000017094)	PRKD1 (ENSOGAG00000002966)
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00940000158921	ENSGT01070000257281	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000166431	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845
Tree shrew	MODERN SPECIES	5642														ENSTBEG00000001431 #21	ENSTBEG00000001424	EAPP (ENSTBEG00000001306) #22
Glires	ANCESTRAL SPECIES	12	ENSGT00940000158921	ENSGT01070000257281	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000166431	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845
Lagomorpha	ANCESTRAL SPECIES	14	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00940000167277	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Rabbit	MODERN SPECIES	8	BRMS1L (ENSOCUG00000006825)	ENSOCUG00000029888	RALGAPA1 (ENSOCUG00000006807)	INSM2 (ENSOCUG00000006804) #7	NFKBIA (ENSOCUG00000015642) #8	PSMA6 (ENSOCUG00000015635) #9	PRORP (ENSOCUG00000016663) #11	PPP2R3C (ENSOCUG00000005768) #12	FAM177A1 (ENSOCUG00000005763) #13	SRP54 (ENSOCUG00000007838) #14	ENSOCUG00000022589	BAZ1A (ENSOCUG00000012593) #16	CFL2 (ENSOCUG00000009383) #18	ENSOCUG00000027099	SNX6 (ENSOCUG00000029421) #21	EAPP (ENSOCUG00000003226) #22	ENSOCUG00000024362	ENSOCUG00000008560 #28	NPAS3 (ENSOCUG00000010632) #30	AKAP6 (ENSOCUG00000014205) #32	ENSOCUG00000025739	ARHGAP5 (ENSOCUG00000010548) #33	NUBPL (ENSOCUG00000017713) #34	GPR33 (ENSOCUG00000022411) #37	DTD2 (ENSOCUG00000007778)	ENSOCUG00000027034	HEATR5A (ENSOCUG00000007228)	ENSOCUG00000002021	HECTD1 (ENSOCUG00000003816)	AP4S1 (ENSOCUG00000011430)	STRN3 (ENSOCUG00000011418)
Rodentia	ANCESTRAL SPECIES	3	ENSGT00940000158921	ENSGT01070000257281	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d.t #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00940000158921	ENSGT01070000257281	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d.t.j #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845
Sciuridae	ANCESTRAL SPECIES	8	ENSGT00940000158921	ENSGT01070000257281	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d.t.j #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845
Marmotini	ANCESTRAL SPECIES	15	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d.s.a #9	ENSGT00940000162733 #8	ENSGT00550000074807.d.t.j #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845
Marmotini_b	ANCESTRAL SPECIES	108	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d.t.j #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	354	ZFAND2A (ENSSTOG00000003030)	GPER1 (ENSSTOG00000034461)	ENSSTOG00000031759	GPR146 (ENSSTOG00000030630)	C7orf50 (ENSSTOG00000027588)	CYP2W1 (ENSSTOG00000003002)	COX19 (ENSSTOG00000032354)	ADAP1 (ENSSTOG00000024349)	GET4 (ENSSTOG00000003934)	SUN1 (ENSSTOG00000003895)	DNAAF5 (ENSSTOG00000003874)	PRKAR1B (ENSSTOG00000003855)	PDGFA (ENSSTOG00000003223)	FAM20C (ENSSTOG00000019720)	ENSSTOG00000034676	ENSSTOG00000024440 #22
Squirrel	MODERN SPECIES	94	BRMS1L (ENSSTOG00000026072)	RALGAPA1 (ENSSTOG00000001249)	INSM2 (ENSSTOG00000026540) #7	NFKBIA (ENSSTOG00000007587) #8	ENSSTOG00000011774 #9	ENSSTOG00000023566	ENSSTOG00000011766 #11	PPP2R3C (ENSSTOG00000009212) #12	FAM177A1 (ENSSTOG00000016027) #13	SRP54 (ENSSTOG00000016023) #14	ENSSTOG00000024975	ENSSTOG00000027145	BAZ1A (ENSSTOG00000012204) #16	ENSSTOG00000001675 #18	SNX6 (ENSSTOG00000030590) #21	ENSSTOG00000005273 #22	SPTSSA (ENSSTOG00000025158) #26	EGLN3 (ENSSTOG00000027368) #28	NPAS3 (ENSSTOG00000014736) #30	AKAP6 (ENSSTOG00000024157) #32	ARHGAP5 (ENSSTOG00000020291) #33	NUBPL (ENSSTOG00000004688) #34	GPR33 (ENSSTOG00000027164) #37	ENSSTOG00000025562	HEATR5A (ENSSTOG00000004620)	HECTD1 (ENSSTOG00000023965)	ENSSTOG00000010759	STRN3 (ENSSTOG00000010749)	COCH (ENSSTOG00000000556)	SCFD1 (ENSSTOG00000008939)	G2E3 (ENSSTOG00000008924)
Arctic ground squirrel	MODERN SPECIES	18	MBIP (ENSUPAG00010000502)	ENSUPAG00010000520	RALGAPA1 (ENSUPAG00010000544)	INSM2 (ENSUPAG00010001161) #7	NFKBIA (ENSUPAG00010001173) #8	PSMA6 (ENSUPAG00010001196) #9	PRORP (ENSUPAG00010001241) #11	ENSUPAG00010001286	PPP2R3C (ENSUPAG00010001303) #12	FAM177A1 (ENSUPAG00010001644) #13	SRP54 (ENSUPAG00010001653) #14	ENSUPAG00010001684	BAZ1A (ENSUPAG00010001722) #16	ENSUPAG00010001776 #18	SNX6 (ENSUPAG00010001786) #21	EAPP (ENSUPAG00010001833) #22	ENSUPAG00010001845	SPTSSA (ENSUPAG00010001850) #26	EGLN3 (ENSUPAG00010001862) #28	NPAS3 (ENSUPAG00010001878) #30	ENSUPAG00010001945	AKAP6 (ENSUPAG00010001952) #32	ARHGAP5 (ENSUPAG00010001993) #33	NUBPL (ENSUPAG00010002012) #34	GPR33 (ENSUPAG00010002026) #37	ENSUPAG00010002029	HEATR5A (ENSUPAG00010002104)	HECTD1 (ENSUPAG00010012181)	AP4S1 (ENSUPAG00010012317)	STRN3 (ENSUPAG00010012325)	COCH (ENSUPAG00010012392)
Alpin marmot	MODERN SPECIES	1	ENSMMMG00000005857	BRMS1L (ENSMMMG00000005865)	RALGAPA1 (ENSMMMG00000005888)	INSM2 (ENSMMMG00000006417) #7	ENSMMMG00000006428	PSMA6 (ENSMMMG00000006439) #9	PRORP (ENSMMMG00000006469) #11	ENSMMMG00000006558 #12	FAM177A1 (ENSMMMG00000006572) #13	SRP54 (ENSMMMG00000006580) #14	ENSMMMG00000006634	BAZ1A (ENSMMMG00000006696) #16	ENSMMMG00000006731 #18	ENSMMMG00000006738 #21	ENSMMMG00000006742 #21	EAPP (ENSMMMG00000006761) #22	ENSMMMG00000006766	SPTSSA (ENSMMMG00000006776) #26	EGLN3 (ENSMMMG00000006788) #28	ENSMMMG00000006799 #30	ENSMMMG00000006834 #32	ARHGAP5 (ENSMMMG00000006856) #33	ENSMMMG00000006876	NUBPL (ENSMMMG00000006890) #34	GPR33 (ENSMMMG00000006908) #37	DTD2 (ENSMMMG00000006910)	HEATR5A (ENSMMMG00000006921)	HECTD1 (ENSMMMG00000006978)	AP4S1 (ENSMMMG00000007043)	STRN3 (ENSMMMG00000007068)	COCH (ENSMMMG00000009368)
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	11	RALGAPA1 (ENSSVLG00005001913)	INSM2 (ENSSVLG00005002423) #7	NFKBIA (ENSSVLG00005002436) #8	PSMA6 (ENSSVLG00005002482) #9	PRORP (ENSSVLG00005002581) #11	PPP2R3C (ENSSVLG00005002629) #12	FAM177A1 (ENSSVLG00005002647) #13	ENSSVLG00005002666	ENSSVLG00005002677	SRP54 (ENSSVLG00005002707) #14	ENSSVLG00005002806	BAZ1A (ENSSVLG00005002845) #16	ENSSVLG00005002890 #18	ENSSVLG00005002935 #21	ENSSVLG00005003024 #17	ENSSVLG00005003042 #22	ENSSVLG00005003053 #26	ENSSVLG00005003068	ENSSVLG00005003086	ENSSVLG00005003092	EGLN3 (ENSSVLG00005003108) #28	NPAS3 (ENSSVLG00005003199) #30	AKAP6 (ENSSVLG00005003395) #32	ARHGAP5 (ENSSVLG00005003448) #33	NUBPL (ENSSVLG00005003491) #34	GPR33 (ENSSVLG00005003516) #37	DTD2 (ENSSVLG00005003527)	HEATR5A (ENSSVLG00005003550)	HECTD1 (ENSSVLG00005003644)	AP4S1 (ENSSVLG00005003726)	STRN3 (ENSSVLG00005003765)
Eurasian red squirrel	MODERN SPECIES	5	ENSSVLG00005021243	ENSSVLG00005021277	SLC1A4 (ENSSVLG00005021330)	SERTAD2 (ENSSVLG00005021387)	ENSSVLG00005021416	LGALSL (ENSSVLG00005021478)	PELI1 (ENSSVLG00005021561)	VPS54 (ENSSVLG00005021631)	UGP2 (ENSSVLG00005021917)	MDH1 (ENSSVLG00005022103)	WDPCP (ENSSVLG00005022261)	OTX1 (ENSSVLG00005022587)	EHBP1 (ENSSVLG00005022645)	TMEM17 (ENSSVLG00005022771)	B3GNT2 (ENSSVLG00005022804)	ENSSVLG00005022821 #22	ENSSVLG00005022859	CRIPT (ENSSVLG00005022896)	CCT4 (ENSSVLG00005022942)	FAM161A (ENSSVLG00005023008)	ENSSVLG00005023092	ENSSVLG00005023117	ENSSVLG00005023491	XPO1 (ENSSVLG00005023207)	USP34 (ENSSVLG00005023531)	ENSSVLG00005023593	ENSSVLG00005023624	ENSSVLG00005023655	C2orf74 (ENSSVLG00005023693)	ENSSVLG00005023730	SANBR (ENSSVLG00005023769)
Hystricomorpha	ANCESTRAL SPECIES	15	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d.t.j #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00950000182957.a.a.b	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845
Naked mole-rat female	MODERN SPECIES	11	ENSHGLG00000000299	ENSHGLG00000000511	RALGAPA1 (ENSHGLG00000001193)	INSM2 (ENSHGLG00000049957) #7	NFKBIA (ENSHGLG00000034266) #8	ENSHGLG00000000520 #9	PRORP (ENSHGLG00000001372) #11	ENSHGLG00000002301 #12	FAM177A1 (ENSHGLG00000045828) #13	SRP54 (ENSHGLG00000002850) #14	ENSHGLG00000000845	BAZ1A (ENSHGLG00000007236) #16	ENSHGLG00000047884	CFL2 (ENSHGLG00000001467) #18	SNX6 (ENSHGLG00000002236) #21	EAPP (ENSHGLG00000035378) #22	ENSHGLG00000046910	ENSHGLG00000002049	ENSHGLG00000032861	ENSHGLG00000001381 #28	ENSHGLG00000001684	ENSHGLG00000000723 #30	ENSHGLG00000045174	ENSHGLG00000001019	ENSHGLG00000001333 #32	ENSHGLG00000050257	ENSHGLG00000036198	ENSHGLG00000048569	ENSHGLG00000050973	ENSHGLG00000003356 #33	ENSHGLG00000043700
Hystricomorpha_a	ANCESTRAL SPECIES	18	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d.t.j #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00950000182957.a.a.b	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845
Guinea pig	DUPLICATION
Guinea pig	MODERN SPECIES	23	MBIP (ENSCPOG00000004648)	BRMS1L (ENSCPOG00000031299)	RALGAPA1 (ENSCPOG00000013938)	INSM2 (ENSCPOG00000013937) #7	NFKBIA (ENSCPOG00000005455) #8	PSMA6 (ENSCPOG00000003107) #9	PRORP (ENSCPOG00000004789) #11	PPP2R3C (ENSCPOG00000004781) #12	FAM177A1 (ENSCPOG00000035599) #13	SRP54 (ENSCPOG00000003691) #14	ENSCPOG00000026661	ENSCPOG00000039496	BAZ1A (ENSCPOG00000011951) #16	CFL2 (ENSCPOG00000033162) #18	SNX6 (ENSCPOG00000006862) #21	ENSCPOG00000003005 #22	SPTSSA (ENSCPOG00000038925) #26	EGLN3 (ENSCPOG00000013369) #28	ENSCPOG00000014222	NPAS3 (ENSCPOG00000006976) #30	AKAP6 (ENSCPOG00000007031) #32
Guinea pig	MODERN SPECIES	32	RNF32 (ENSCPOG00000012026)	SHH (ENSCPOG00000023638)	RBM33 (ENSCPOG00000011852)	ENSCPOG00000009846	EN2 (ENSCPOG00000024572)	INSIG1 (ENSCPOG00000014739)	HTR5A (ENSCPOG00000007970)	PAXIP1 (ENSCPOG00000001303)	DPP6 (ENSCPOG00000003511)	ENSCPOG00000003695	XRCC2 (ENSCPOG00000012263)	CCT8L2 (ENSCPOG00000020546)	KMT2C (ENSCPOG00000001857)	GALNT11 (ENSCPOG00000005174)	GALNTL5 (ENSCPOG00000005168)	ENSCPOG00000022472 #22	PRKAG2 (ENSCPOG00000015691)	RHEB (ENSCPOG00000031743)	Crygn (ENSCPOG00000005218)	WDR86 (ENSCPOG00000026626)	NUB1 (ENSCPOG00000012070)	SMARCD3 (ENSCPOG00000020971)	CHPF2 (ENSCPOG00000033035)	ABCF2 (ENSCPOG00000008379)	IQCA1L (ENSCPOG00000006528)	ASB10 (ENSCPOG00000007315)	GBX1 (ENSCPOG00000011349)	AGAP3 (ENSCPOG00000004084)	TMUB1 (ENSCPOG00000032741)	FASTK (ENSCPOG00000037276)	SLC4A2 (ENSCPOG00000013226)
Hystricomorpha_b	ANCESTRAL SPECIES	18	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d.t.j #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00950000182957.a.a.b	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845
Long-tailed chinchilla	MODERN SPECIES	116	NKX2-1 (ENSCLAG00000011429)	MBIP (ENSCLAG00000010075)	BRMS1L (ENSCLAG00000009601)	RALGAPA1 (ENSCLAG00000009050)	INSM2 (ENSCLAG00000011235) #7	NFKBIA (ENSCLAG00000011667) #8	PSMA6 (ENSCLAG00000012840) #9	PRORP (ENSCLAG00000012615) #11	ENSCLAG00000014794 #12	FAM177A1 (ENSCLAG00000015226) #13	SRP54 (ENSCLAG00000015076) #14	ENSCLAG00000012880	BAZ1A (ENSCLAG00000015173) #16	ENSCLAG00000012876 #18	SNX6 (ENSCLAG00000012353) #21	EAPP (ENSCLAG00000013007) #22	ENSCLAG00000012005	EGLN3 (ENSCLAG00000010720) #28	ENSCLAG00000011029	NPAS3 (ENSCLAG00000013939) #30	AKAP6 (ENSCLAG00000013553) #32	ARHGAP5 (ENSCLAG00000015975) #33	NUBPL (ENSCLAG00000011929) #34	GPR33 (ENSCLAG00000013344) #37	DTD2 (ENSCLAG00000014737)	HEATR5A (ENSCLAG00000009555)	HECTD1 (ENSCLAG00000011096)	ENSCLAG00000009036	ENSCLAG00000011538	COCH (ENSCLAG00000011067)	SCFD1 (ENSCLAG00000012279)
Degu	DUPLICATION
Degu	MODERN SPECIES	83													ENSODEG00000007841	ENSODEG00000009188	WNT8B (ENSODEG00000006011)	ENSODEG00000005730 #22	NDUFB8 (ENSODEG00000006621)	ENSODEG00000007007	PAX2 (ENSODEG00000006975)	SLF2 (ENSODEG00000008647)	SEMA4G (ENSODEG00000005984)	ENSODEG00000006668	TWNK (ENSODEG00000006072)	LZTS2 (ENSODEG00000006752)	PDZD7 (ENSODEG00000006718)	SFXN3 (ENSODEG00000007542)	KAZALD1 (ENSODEG00000005804)	ENSODEG00000006094	LBX1 (ENSODEG00000006684)	BTRC (ENSODEG00000008464)	POLL (ENSODEG00000007469)
Degu	MODERN SPECIES	108								ENSODEG00000010363	ENSODEG00000011399	PTPN5 (ENSODEG00000011115)	TMEM86A (ENSODEG00000012064)	ENSODEG00000019868	ENSODEG00000010606	ENSODEG00000009912	SPTY2D1 (ENSODEG00000011157)	ENSODEG00000010073 #22	ENSODEG00000009385	TSG101 (ENSODEG00000011046)	ENSODEG00000010760	ENSODEG00000010324	ENSODEG00000009666	ENSODEG00000019665	ENSODEG00000010218	ENSODEG00000009884	ENSODEG00000009628	ENSODEG00000009541	ENSODEG00000009128	SAAL1 (ENSODEG00000013515)	TPH1 (ENSODEG00000009357)	KCNC1 (ENSODEG00000009078)	MYOD1 (ENSODEG00000009827)
Rodentia_B	ANCESTRAL SPECIES	7	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d.t #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Kangaroo rat	MODERN SPECIES	335	Pax9 (ENSDORG00000028039)	Nkx2-1 (ENSDORG00000023229)	Mbip (ENSDORG00000000347)	ENSDORG00000024326	ENSDORG00000027989	Brms1l (ENSDORG00000005811)	Ralgapa1 (ENSDORG00000001812)	ENSDORG00000012862	Psma6 (ENSDORG00000010060) #9	ENSDORG00000010059 #11	ENSDORG00000026400 #13	ENSDORG00000005159 #14	Baz1a (ENSDORG00000008833) #16	Cfl2 (ENSDORG00000006039) #18	Snx6 (ENSDORG00000007000) #21	Eapp (ENSDORG00000010166) #22	Sptssa (ENSDORG00000030126) #26	Egln3 (ENSDORG00000014235) #28
Myomorpha	ANCESTRAL SPECIES	7	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d.t #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	86																ENSJJAG00000015801 #22	Sptssa (ENSJJAG00000014413) #26	ENSJJAG00000003660	Egln3 (ENSJJAG00000013045) #28	Arhgap5 (ENSJJAG00000022832) #33	ENSJJAG00000019398	ENSJJAG00000015737	Heatr5a (ENSJJAG00000019420)	Hectd1 (ENSJJAG00000001344)	Ap4s1 (ENSJJAG00000022804)	Strn3 (ENSJJAG00000019703)	Coch (ENSJJAG00000019025)	G2e3 (ENSJJAG00000014439)	ENSJJAG00000001269	ENSJJAG00000001174	Nova1 (ENSJJAG00000012915)
Lesser Egyptian jerboa	MODERN SPECIES	184			ENSJJAG00000019460	Rnase10 (ENSJJAG00000019054)	ENSJJAG00000018453	Pip4p1 (ENSJJAG00000012864)	ENSJJAG00000012067	Osgep (ENSJJAG00000010067)	ENSJJAG00000007593	Klhl33 (ENSJJAG00000002330)	Tep1 (ENSJJAG00000000067)	Parp2 (ENSJJAG00000006912)	ENSJJAG00000000726	ENSJJAG00000012265	Ttc5 (ENSJJAG00000000234)	ENSJJAG00000020853 #22	ENSJJAG00000012244	Or4k1 (ENSJJAG00000012249)	Or4m1 (ENSJJAG00000012228)	ENSJJAG00000012234	ENSJJAG00000012206	ENSJJAG00000019743	Or4n5 (ENSJJAG00000023766)	Slc30a4 (ENSJJAG00000022834)	ENSJJAG00000022498	Sqor (ENSJJAG00000022157)	ENSJJAG00000020506	ENSJJAG00000012383	ENSJJAG00000012377	ENSJJAG00000020214	Sema6d (ENSJJAG00000017228)
Muroidea	ANCESTRAL SPECIES	54	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00940000162733 #8	ENSGT00550000074807.d.t #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Upper Galilee mountains blind mole rat	MODERN SPECIES	351															ENSNGAG00000005761	Eapp (ENSNGAG00000015838) #22	Sptssa (ENSNGAG00000005131) #26
Muroidea_A	ANCESTRAL SPECIES	15	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00950000182987.c.a.a.o.a	ENSGT00940000162733 #8	ENSGT00550000074807.d.t #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Murinae	ANCESTRAL SPECIES	8	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00950000182987.c.a.a.o.a	ENSGT00940000162733 #8	ENSGT00550000074807.d.t #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Mus	ANCESTRAL SPECIES	10	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00950000182987.c.a.a.o.a	ENSGT00940000162733 #8	ENSGT00550000074807.d.t #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00950000182987.c.a.a.o.a	ENSGT00940000162733 #8	ENSGT00550000074807.d.t #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00950000182987.c.a.a.o.a	ENSGT00940000162733 #8	ENSGT00550000074807.d.t #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a.d #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Mus_C	ANCESTRAL SPECIES	11	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00950000182987.c.a.a.o.a	ENSGT00940000162733 #8	ENSGT00550000074807.d.t #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
spretus	MODERN SPECIES	3	Brms1l (MGP_SPRETEiJ_G0018609)	MGP_SPRETEiJ_G0018608	Insm2 (MGP_SPRETEiJ_G0018607) #7	Aldoart2 (MGP_SPRETEiJ_G0018606)	Nfkbia (MGP_SPRETEiJ_G0018605) #8	Psma6 (MGP_SPRETEiJ_G0018604) #9	MGP_SPRETEiJ_G0018603 #11	Fam177a2 (MGP_SPRETEiJ_G0018602) #13	Fam177a (MGP_SPRETEiJ_G0018601) #13	MGP_SPRETEiJ_G0018600 #14	MGP_SPRETEiJ_G0018599	MGP_SPRETEiJ_G0018598	Baz1a (MGP_SPRETEiJ_G0018597) #16	Cfl2 (MGP_SPRETEiJ_G0018596) #18	Snx6 (MGP_SPRETEiJ_G0018595) #21	Eapp (MGP_SPRETEiJ_G0018594) #22	Sptssa (MGP_SPRETEiJ_G0018593) #26	Egln3 (MGP_SPRETEiJ_G0018592) #28	Npas3 (MGP_SPRETEiJ_G0018591) #30	Akap6 (MGP_SPRETEiJ_G0018590) #32	Arhgap5 (MGP_SPRETEiJ_G0018589) #33	Nubpl (MGP_SPRETEiJ_G0018588) #34	Gpr33 (MGP_SPRETEiJ_G0018587) #37	Dtd2 (MGP_SPRETEiJ_G0018586)	Heatr5a (MGP_SPRETEiJ_G0018585)	Hectd1 (MGP_SPRETEiJ_G0018584)	Ap4s1 (MGP_SPRETEiJ_G0018583)	Strn3 (MGP_SPRETEiJ_G0018582)	Coch (MGP_SPRETEiJ_G0018581)	Scfd1 (MGP_SPRETEiJ_G0018580)	G2e3 (MGP_SPRETEiJ_G0018579)
Steppe mouse	MODERN SPECIES	2243																Eapp (ENSMSIG00000008901) #22	Sptssa (ENSMSIG00000008968) #26
Mouse	MODERN SPECIES	3	Insm2 (ENSMUSG00000045440) #7	Aldoart2 (ENSMUSG00000063129)	Nfkbia (ENSMUSG00000021025) #8	Psma6 (ENSMUSG00000021024) #9	Prorp (ENSMUSG00000021023) #11	Ppp2r3c (ENSMUSG00000021022) #12	Srp54c (ENSMUSG00000079108) #14	Fam177a2 (ENSMUSG00000094103) #13	Srp54b (ENSMUSG00000112449) #14	Fam177a (ENSMUSG00000095595) #13	Srp54a (ENSMUSG00000073079) #14	2700097O09Rik (ENSMUSG00000062198)	Baz1a (ENSMUSG00000035021) #16	Cfl2 (ENSMUSG00000062929) #18	Snx6 (ENSMUSG00000005656) #21	Eapp (ENSMUSG00000054302) #22	Sptssa (ENSMUSG00000044408) #26	Egln3 (ENSMUSG00000035105) #28	Npas3 (ENSMUSG00000021010) #30	Akap6 (ENSMUSG00000061603) #32	Arhgap5 (ENSMUSG00000035133) #33	Nubpl (ENSMUSG00000035142) #34	Gpr33 (ENSMUSG00000035148) #37	Dtd2 (ENSMUSG00000020956)	Heatr5a (ENSMUSG00000035181)	Hectd1 (ENSMUSG00000035247)	Ap4s1 (ENSMUSG00000020955)	Strn3 (ENSMUSG00000020954)	Coch (ENSMUSG00000020953)	Scfd1 (ENSMUSG00000020952)	G2e3 (ENSMUSG00000035293)
Ryukyu mouse	MODERN SPECIES	3	MGP_CAROLIEiJ_G0017763	Insm2 (MGP_CAROLIEiJ_G0017762) #7	Aldoart2 (MGP_CAROLIEiJ_G0017761)	Nfkbia (MGP_CAROLIEiJ_G0017760) #8	Psma6 (MGP_CAROLIEiJ_G0017759) #9	Prorp (MGP_CAROLIEiJ_G0017758) #11	Ppp2r3c (MGP_CAROLIEiJ_G0017757) #12	MGP_CAROLIEiJ_G0017756 #13	MGP_CAROLIEiJ_G0017755 #13	MGP_CAROLIEiJ_G0017754 #14	2700097O09Rik (MGP_CAROLIEiJ_G0017753)	MGP_CAROLIEiJ_G0017752	Baz1a (MGP_CAROLIEiJ_G0017751) #16	Cfl2 (MGP_CAROLIEiJ_G0017750) #18	Snx6 (MGP_CAROLIEiJ_G0017749) #21	Eapp (MGP_CAROLIEiJ_G0017748) #22	Sptssa (MGP_CAROLIEiJ_G0017747) #26	Egln3 (MGP_CAROLIEiJ_G0017746) #28	Npas3 (MGP_CAROLIEiJ_G0017745) #30	Akap6 (MGP_CAROLIEiJ_G0017744) #32	Arhgap5 (MGP_CAROLIEiJ_G0017743) #33	Nubpl (MGP_CAROLIEiJ_G0017742) #34	Gpr33 (MGP_CAROLIEiJ_G0017741) #37	Dtd2 (MGP_CAROLIEiJ_G0017740)	Heatr5a (MGP_CAROLIEiJ_G0017739)	Hectd1 (MGP_CAROLIEiJ_G0017738)	Ap4s1 (MGP_CAROLIEiJ_G0017737)	Strn3 (MGP_CAROLIEiJ_G0017736)	Coch (MGP_CAROLIEiJ_G0017735)	Scfd1 (MGP_CAROLIEiJ_G0017734)	G2e3 (MGP_CAROLIEiJ_G0017733)
Shrew mouse	MODERN SPECIES	20	MGP_PahariEiJ_G0029519	Insm2 (MGP_PahariEiJ_G0029518) #7	Aldoart2 (MGP_PahariEiJ_G0029517)	Nfkbia (MGP_PahariEiJ_G0029516) #8	Psma6 (MGP_PahariEiJ_G0029515) #9	Prorp (MGP_PahariEiJ_G0029514) #11	Ppp2r3c (MGP_PahariEiJ_G0029513) #12	MGP_PahariEiJ_G0029512 #13	MGP_PahariEiJ_G0029511 #13	MGP_PahariEiJ_G0029510 #14	2700097O09Rik (MGP_PahariEiJ_G0029509)	MGP_PahariEiJ_G0029508	Baz1a (MGP_PahariEiJ_G0029507) #16	Cfl2 (MGP_PahariEiJ_G0029506) #18	Snx6 (MGP_PahariEiJ_G0029505) #21	Eapp (MGP_PahariEiJ_G0029504) #22	Sptssa (MGP_PahariEiJ_G0029503) #26	Egln3 (MGP_PahariEiJ_G0029502) #28	Npas3 (MGP_PahariEiJ_G0029501) #30	Akap6 (MGP_PahariEiJ_G0029500) #32	Arhgap5 (MGP_PahariEiJ_G0029499) #33	Nubpl (MGP_PahariEiJ_G0029498) #34	Gpr33 (MGP_PahariEiJ_G0029497) #37	Dtd2 (MGP_PahariEiJ_G0029496)	Heatr5a (MGP_PahariEiJ_G0029495)	Hectd1 (MGP_PahariEiJ_G0029494)	Ap4s1 (MGP_PahariEiJ_G0029493)	Strn3 (MGP_PahariEiJ_G0029492)	Coch (MGP_PahariEiJ_G0029491)	Scfd1 (MGP_PahariEiJ_G0029490)	G2e3 (MGP_PahariEiJ_G0029489)
Rat	MODERN SPECIES	16	Mbip (ENSRNOG00000008610)	Brms1l (ENSRNOG00000008249)	LOC100359668 (ENSRNOG00000033776)	Ralgapa1 (ENSRNOG00000046256)	Aldoart2 (ENSRNOG00000030869)	Nfkbia (ENSRNOG00000007390)	Psma6 (ENSRNOG00000007114) #9	Prorp (ENSRNOG00000007043) #11	Ppp2r3c (ENSRNOG00000023591) #12	Fam177a1 (ENSRNOG00000064975) #13	Srp54a (ENSRNOG00000032776) #14	RGD1304624 (ENSRNOG00000006986)	Baz1a (ENSRNOG00000006828) #16	Cfl2 (ENSRNOG00000045892) #18	Snx6 (ENSRNOG00000005249) #21	Eapp (ENSRNOG00000004509) #22	Sptssa (ENSRNOG00000004292) #26	Rps10 (ENSRNOG00000066637)	Timm23b (ENSRNOG00000031285)	Egln3 (ENSRNOG00000005053) #28	ENSRNOG00000066295	Npas3 (ENSRNOG00000068162) #30	Akap6 (ENSRNOG00000004841) #32	Arhgap5 (ENSRNOG00000004696) #33	ENSRNOG00000070950	Nubpl (ENSRNOG00000027444) #34	Gpr33-ps1 (ENSRNOG00000038990) #37	Dtd2 (ENSRNOG00000006727)	Heatr5a (ENSRNOG00000006483)	Hectd1 (ENSRNOG00000006905)	Ap4s1 (ENSRNOG00000005765)
Cricetidae	ANCESTRAL SPECIES	17	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00950000182987.c.a.a.o.a	ENSGT00940000162733 #8	ENSGT00550000074807.d.t #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Cricetinae	ANCESTRAL SPECIES	11	ENSGT00900000143527	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00950000182987.c.a.a.o.a	ENSGT00940000162733 #8	ENSGT00550000074807.d.t #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00640000092775	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Chinese hamster chok1gshd	MODERN SPECIES	2	ENSCGRG00001024105	Ralgapa1 (ENSCGRG00001024774)	Insm2 (ENSCGRG00001024873) #7	Aldoart2 (ENSCGRG00001002722)	ENSCGRG00001024024 #8	Psma6 (ENSCGRG00001001597) #9	ENSCGRG00001003022 #11	ENSCGRG00001006281 #12	ENSCGRG00001007854 #13	ENSCGRG00001009525 #14	2700097O09Rik (ENSCGRG00001023053)	ENSCGRG00001023351	Baz1a (ENSCGRG00001013418) #16	Cfl2 (ENSCGRG00001014849) #18	Snx6 (ENSCGRG00001015718) #21	Eapp (ENSCGRG00001019760) #22	Sptssa (ENSCGRG00001009767) #26	Egln3 (ENSCGRG00001011120) #28	Npas3 (ENSCGRG00001014006) #30	Akap6 (ENSCGRG00001015059) #32	ENSCGRG00001009818	Arhgap5 (ENSCGRG00001002196) #33	Nubpl (ENSCGRG00001004006) #34	ENSCGRG00001006641	Gpr33 (ENSCGRG00001011244) #37	Dtd2 (ENSCGRG00001015902)	Heatr5a (ENSCGRG00001017067)	ENSCGRG00001024436	Hectd1 (ENSCGRG00001024884)	Ap4s1 (ENSCGRG00001023362)	Strn3 (ENSCGRG00001000550)
Golden Hamster	MODERN SPECIES	716	Nkx2-1 (ENSMAUG00000019963)	ENSMAUG00000012140	Brms1l (ENSMAUG00000020210)	ENSMAUG00000009162	Ralgapa1 (ENSMAUG00000013201)	Insm2 (ENSMAUG00000003017) #7	Nfkbia (ENSMAUG00000006212) #8	Psma6 (ENSMAUG00000019916) #9	Prorp (ENSMAUG00000019281) #11	Ppp2r3c (ENSMAUG00000016875) #12	ENSMAUG00000010631 #13	ENSMAUG00000014447 #14	Baz1a (ENSMAUG00000012163) #16	Cfl2 (ENSMAUG00000000736) #18	ENSMAUG00000014794 #21	Eapp (ENSMAUG00000011998) #22	Sptssa (ENSMAUG00000014218) #26	Egln3 (ENSMAUG00000012097) #28	Npas3 (ENSMAUG00000001084) #30	Akap6 (ENSMAUG00000014339) #32	Arhgap5 (ENSMAUG00000008108) #33
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00510000047831	ENSGT00940000158921	ENSGT01070000257281	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000001332 #22
Hedgehog	MODERN SPECIES	2707																EAPP (ENSEEUG00000011775) #22
Common shrew	MODERN SPECIES	2011																EAPP (ENSSARG00000000229) #22
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00510000047831	ENSGT00940000158921	ENSGT01070000257281	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00510000047831	ENSGT00940000158921	ENSGT01070000257281	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Camelidae	ANCESTRAL SPECIES	41	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00940000162733 #8	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00940000167277	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Alpaca	MODERN SPECIES	305													BAZ1A (ENSVPAG00000003274) #16	CFL2 (ENSVPAG00000003273) #18	SNX6 (ENSVPAG00000003272) #21	EAPP (ENSVPAG00000003271) #22
Arabian camel	MODERN SPECIES	32	NKX2-1 (ENSCDRG00005017830)	MBIP (ENSCDRG00005017739)	BRMS1L (ENSCDRG00005017695)	RALGAPA1 (ENSCDRG00005017292)	INSM2 (ENSCDRG00005017254) #7	NFKBIA (ENSCDRG00005017198) #8	PSMA6 (ENSCDRG00005017112) #9	PRORP (ENSCDRG00005016960) #11	PPP2R3C (ENSCDRG00005016852) #12	FAM177A1 (ENSCDRG00005016804) #13	SRP54 (ENSCDRG00005016645) #14	ENSCDRG00005016608	BAZ1A (ENSCDRG00005016142) #16	CFL2 (ENSCDRG00005016024) #18	SNX6 (ENSCDRG00005015791) #21	EAPP (ENSCDRG00005015710) #22	ENSCDRG00005015685	EGLN3 (ENSCDRG00005015624) #28	ENSCDRG00005015572 #30	AKAP6 (ENSCDRG00005015475) #32	ARHGAP5 (ENSCDRG00005015272) #33	NUBPL (ENSCDRG00005015152) #34	GPR33 (ENSCDRG00005015130) #37	DTD2 (ENSCDRG00005015091)	HEATR5A (ENSCDRG00005014747)	ENSCDRG00005014715	HECTD1 (ENSCDRG00005014317)	AP4S1 (ENSCDRG00005014200)	STRN3 (ENSCDRG00005013738)	COCH (ENSCDRG00005013624)	SCFD1 (ENSCDRG00005013449)
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Cetacea	ANCESTRAL SPECIES	2	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Odontoceti_a	DUPLICATION
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332.m #22	ENSGT00390000002766.b.b #26	ENSGT00390000015821.h	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B.l #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00940000178928	ENSGT00390000001332.m #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B.l #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Monodontidae	ANCESTRAL SPECIES	11	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00940000178928	ENSGT00390000001332.m #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B.l #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Narwhal	MODERN SPECIES	308	BRMS1L (ENSMMNG00015020339)	ENSMMNG00015020326	RALGAPA1 (ENSMMNG00015020129)	INSM2 (ENSMMNG00015020039) #7	NFKBIA (ENSMMNG00015020016) #8	PSMA6 (ENSMMNG00015019949) #9	PRORP (ENSMMNG00015019841) #11	PPP2R3C (ENSMMNG00015019785) #12	FAM177A1 (ENSMMNG00015019748) #13	SRP54 (ENSMMNG00015019691) #14	ENSMMNG00015019653	BAZ1A (ENSMMNG00015019553) #16	CFL2 (ENSMMNG00015019505) #18	SNX6 (ENSMMNG00015019443) #21	ENSMMNG00015019404	ENSMMNG00015019371 #22	SPTSSA (ENSMMNG00015019349) #26	EGLN3 (ENSMMNG00015019291) #28	NPAS3 (ENSMMNG00015019078) #30	AKAP6 (ENSMMNG00015018988) #32	ARHGAP5 (ENSMMNG00015018917) #33	ENSMMNG00015018891	NUBPL (ENSMMNG00015018841) #34	GPR33 (ENSMMNG00015018815) #37	DTD2 (ENSMMNG00015018797)	HEATR5A (ENSMMNG00015018679)	HECTD1 (ENSMMNG00015018463)	AP4S1 (ENSMMNG00015018404)	STRN3 (ENSMMNG00015018258)	COCH (ENSMMNG00015018104)	ENSMMNG00015018060
Beluga whale	MODERN SPECIES	44	NKX2-1 (ENSDLEG00000012182)	MBIP (ENSDLEG00000012196)	BRMS1L (ENSDLEG00000012215)	RALGAPA1 (ENSDLEG00000012252)	INSM2 (ENSDLEG00000012328) #7	NFKBIA (ENSDLEG00000012342) #8	PSMA6 (ENSDLEG00000012355) #9	ENSDLEG00000012386 #11	PPP2R3C (ENSDLEG00000012415) #12	FAM177A1 (ENSDLEG00000012441) #13	SRP54 (ENSDLEG00000012450) #14	ENSDLEG00000012461	BAZ1A (ENSDLEG00000012480) #16	CFL2 (ENSDLEG00000012575) #18	SNX6 (ENSDLEG00000012585) #21	ENSDLEG00000012618 #22	ENSDLEG00000012640	SPTSSA (ENSDLEG00000012661) #26	ENSDLEG00000012666	EGLN3 (ENSDLEG00000012687) #28	NPAS3 (ENSDLEG00000012702) #30	ENSDLEG00000012728	ENSDLEG00000012743 #32	ENSDLEG00000012755 #32	ARHGAP5 (ENSDLEG00000012779) #33	ENSDLEG00000012791	NUBPL (ENSDLEG00000013432) #34	GPR33 (ENSDLEG00000013450) #37	DTD2 (ENSDLEG00000013452)	HEATR5A (ENSDLEG00000013600)	HECTD1 (ENSDLEG00000015830)
Vaquita	MODERN SPECIES	11	MBIP (ENSPSNG00000008119)	BRMS1L (ENSPSNG00000008049)	RALGAPA1 (ENSPSNG00000007885)	INSM2 (ENSPSNG00000019636) #7	NFKBIA (ENSPSNG00000019593) #8	PSMA6 (ENSPSNG00000019488) #9	PRORP (ENSPSNG00000019340) #11	PPP2R3C (ENSPSNG00000019237) #12	FAM177A1 (ENSPSNG00000019175) #13	SRP54 (ENSPSNG00000018994) #14	ENSPSNG00000018927	BAZ1A (ENSPSNG00000018849) #16	ENSPSNG00000018765 #18	SNX6 (ENSPSNG00000018667) #21	ENSPSNG00000018564	ENSPSNG00000018519 #22	ENSPSNG00000018496	SPTSSA (ENSPSNG00000018482) #26	ENSPSNG00000018446	EGLN3 (ENSPSNG00000018355) #28	NPAS3 (ENSPSNG00000017739) #30	AKAP6 (ENSPSNG00000017615) #32	ARHGAP5 (ENSPSNG00000017472) #33	ENSPSNG00000017433	NUBPL (ENSPSNG00000017395) #34	DTD2 (ENSPSNG00000017275)	HEATR5A (ENSPSNG00000017090)	HECTD1 (ENSPSNG00000016911)	AP4S1 (ENSPSNG00000016811)	STRN3 (ENSPSNG00000016653)	COCH (ENSPSNG00000016321)
Dolphin	MODERN SPECIES	1591																EAPP (ENSTTRG00000011628) #22	SPTSSA (ENSTTRG00000011626) #26
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00390000001332.n #22
Odontoceti_b	ANCESTRAL SPECIES	22	ENSGT00390000008496.j.b.b.b	ENSGT00940000160782	ENSGT00940000154443.b.a	ENSGT00940000155375.c	ENSGT00390000001021	ENSGT00390000006290	ENSGT00940000163590	ENSGT00390000008856	ENSGT00940000153737.b	ENSGT00500000044890.a.a	ENSGT00940000156153	ENSGT00940000153096.b.c.a.a.b	ENSGT00510000047417.j	ENSGT00940000159616	ENSGT00940000160302	ENSGT00390000001332.n #22	ENSGT00940000158618	ENSGT00940000155009	ENSGT00940000160244	ENSGT00390000003231.b	ENSGT00530000063186.a	ENSGT00940000158538	ENSGT00940000159951.e.a.a	ENSGT00940000154631.c.a	ENSGT00940000162825	ENSGT00940000158854.i.b	ENSGT00940000165165	ENSGT00950000183442	ENSGT00530000063484.b.b	ENSGT00950000182841.b.a.a.a.d.a.a	ENSGT00940000164247
Monodontidae	ANCESTRAL SPECIES	25	ENSGT00390000008496.j.b.b.b	ENSGT00940000160782	ENSGT00940000154443.b.a	ENSGT00940000155375.c	ENSGT00390000001021	ENSGT00390000006290	ENSGT00940000163590	ENSGT00390000008856	ENSGT00940000153737.b	ENSGT00500000044890.a.a	ENSGT00940000156153	ENSGT00940000153096.b.c.a.a.b	ENSGT00510000047417.j	ENSGT00940000159616	ENSGT00940000160302	ENSGT00390000001332.n #22	ENSGT00940000158618	ENSGT00940000155009	ENSGT00940000160244	ENSGT00390000003231.b	ENSGT00530000063186.a	ENSGT00950000182841.b.a.a.a.d.a.a.d	ENSGT00940000158538	ENSGT00940000159951.e.a.a	ENSGT00940000154631.c.a	ENSGT00940000162825	ENSGT00390000009435.h.b	ENSGT00940000158854.i.b	ENSGT00940000165165	ENSGT00530000063484.b.b	ENSGT00950000182841.b.a.a.a.d.a.a.c
Narwhal	MODERN SPECIES	309	NYX (ENSMMNG00015010048)	ENSMMNG00015010041	DDX3X (ENSMMNG00015010005)	USP9X (ENSMMNG00015009970)	MED14 (ENSMMNG00015009892)	CXorf38 (ENSMMNG00015009866)	ENSMMNG00015009857	ATP6AP2 (ENSMMNG00015009785)	BCOR (ENSMMNG00015009731)	MID1IP1 (ENSMMNG00015009716)	TSPAN7 (ENSMMNG00015009703)	ENSMMNG00015009683	OTC (ENSMMNG00015009674)	RPGR (ENSMMNG00015009649)	SRPX (ENSMMNG00015009593)	ENSMMNG00015009557 #22	SYTL5 (ENSMMNG00015009525)	DYNLT3 (ENSMMNG00015009487)	CYBB (ENSMMNG00015009458)	XK (ENSMMNG00015009443)	LANCL3 (ENSMMNG00015009431)	ENSMMNG00015009412	PRRG1 (ENSMMNG00015009403)	ENSMMNG00015009377	ENSMMNG00015009347	ENSMMNG00015009340	ENSMMNG00015009333	ENSMMNG00015014787	TMEM47 (ENSMMNG00015014773)	ENSMMNG00015014766	ENSMMNG00015014749
Beluga whale	MODERN SPECIES	58	CASK (ENSDLEG00000017934)	NYX (ENSDLEG00000017648)	DDX3X (ENSDLEG00000017612)	ENSDLEG00000017591	USP9X (ENSDLEG00000014783)	MED14 (ENSDLEG00000013718)	CUNHXorf38 (ENSDLEG00000013605)	ENSDLEG00000013589	ATP6AP2 (ENSDLEG00000013556)	BCOR (ENSDLEG00000013499)	MID1IP1 (ENSDLEG00000013488)	TSPAN7 (ENSDLEG00000013478)	OTC (ENSDLEG00000013458)	RPGR (ENSDLEG00000013393)	SRPX (ENSDLEG00000013368)	ENSDLEG00000013338 #22	SYTL5 (ENSDLEG00000013025)	DYNLT3 (ENSDLEG00000012975)	XK (ENSDLEG00000012944)	LANCL3 (ENSDLEG00000012905)	ENSDLEG00000012893	ENSDLEG00000012888	ENSDLEG00000012878	ENSDLEG00000012845	ENSDLEG00000012838	PPP4R3C (ENSDLEG00000012820)	ENSDLEG00000012808
Vaquita	MODERN SPECIES	34	CASK (ENSPSNG00000015050)	ENSPSNG00000014987	NYX (ENSPSNG00000014932)	DDX3X (ENSPSNG00000014476)	USP9X (ENSPSNG00000013676)	ENSPSNG00000013458	CXorf38 (ENSPSNG00000013381)	ENSPSNG00000021202	ATP6AP2 (ENSPSNG00000021047)	BCOR (ENSPSNG00000020930)	MID1IP1 (ENSPSNG00000020892)	TSPAN7 (ENSPSNG00000020865)	OTC (ENSPSNG00000020795)	ENSPSNG00000020756	SRPX (ENSPSNG00000020642)	ENSPSNG00000020588 #22	SYTL5 (ENSPSNG00000020543)	ENSPSNG00000020516	DYNLT3 (ENSPSNG00000020495)	CYBB (ENSPSNG00000020418)	XK (ENSPSNG00000020390)	LANCL3 (ENSPSNG00000020277)	ENSPSNG00000020262	ENSPSNG00000020244	PRRG1 (ENSPSNG00000020215)	ENSPSNG00000020178	ENSPSNG00000020168	ENSPSNG00000020148	ENSPSNG00000020119	ENSPSNG00000020097	ENSPSNG00000020035
Sperm whale	MODERN SPECIES	2	MBIP (ENSPCTG00005010176)	BRMS1L (ENSPCTG00005010126)	ENSPCTG00005010040	RALGAPA1 (ENSPCTG00005009631)	INSM2 (ENSPCTG00005009574) #7	NFKBIA (ENSPCTG00005009454) #8	PSMA6 (ENSPCTG00005009278) #9	KIAA0391 (ENSPCTG00005009126) #11	PPP2R3C (ENSPCTG00005008942) #12	FAM177A1 (ENSPCTG00005008870) #13	SRP54 (ENSPCTG00005008651) #14	ENSPCTG00005008553	BAZ1A (ENSPCTG00005008484) #16	CFL2 (ENSPCTG00005008413) #18	SNX6 (ENSPCTG00005008297) #21	EAPP (ENSPCTG00005008229) #22	ENSPCTG00005008216	SPTSSA (ENSPCTG00005008208) #26	EGLN3 (ENSPCTG00005008171) #28	NPAS3 (ENSPCTG00005007723) #30	AKAP6 (ENSPCTG00005007589) #32	ARHGAP5 (ENSPCTG00005007494) #33	ENSPCTG00005007465	NUBPL (ENSPCTG00005007415) #34	ENSPCTG00005007388	ENSPCTG00005007379	GPR33 (ENSPCTG00005007371) #37	DTD2 (ENSPCTG00005007351)	HEATR5A (ENSPCTG00005007185)	ENSPCTG00005007130	HECTD1 (ENSPCTG00005007027)
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES	11	INSM2 (ENSBMSG00010000547) #7	NFKBIA (ENSBMSG00010000520) #8	PSMA6 (ENSBMSG00010000487) #9	PRORP (ENSBMSG00010000430) #11	PPP2R3C (ENSBMSG00010000349) #12	FAM177A1 (ENSBMSG00010000293) #13	SRP54 (ENSBMSG00010000198) #14	ENSBMSG00010000124	BAZ1A (ENSBMSG00010013408) #16	ENSBMSG00010013382 #18	SNX6 (ENSBMSG00010013359) #21	ENSBMSG00010013323	ENSBMSG00010013306 #22	ENSBMSG00010013286	ENSBMSG00010013245	ENSBMSG00010013231 #22	ENSBMSG00010013221	EGLN3 (ENSBMSG00010013202) #28	NPAS3 (ENSBMSG00010013089) #30	AKAP6 (ENSBMSG00010013021) #32	ARHGAP5 (ENSBMSG00010012978) #33	NUBPL (ENSBMSG00010012964) #34	GPR33 (ENSBMSG00010012958) #37	DTD2 (ENSBMSG00010012949)	HEATR5A (ENSBMSG00010012932)	HECTD1 (ENSBMSG00010012906)	AP4S1 (ENSBMSG00010012875)	STRN3 (ENSBMSG00010012838)	COCH (ENSBMSG00010012783)	SCFD1 (ENSBMSG00010012723)	ENSBMSG00010012692
Blue whale	MODERN SPECIES	11	STRN3 (ENSBMSG00010012838)	AP4S1 (ENSBMSG00010012875)	HECTD1 (ENSBMSG00010012906)	HEATR5A (ENSBMSG00010012932)	DTD2 (ENSBMSG00010012949)	GPR33 (ENSBMSG00010012958) #37	NUBPL (ENSBMSG00010012964) #34	ARHGAP5 (ENSBMSG00010012978) #33	AKAP6 (ENSBMSG00010013021) #32	NPAS3 (ENSBMSG00010013089) #30	EGLN3 (ENSBMSG00010013202) #28	ENSBMSG00010013221	ENSBMSG00010013231 #22	ENSBMSG00010013245	ENSBMSG00010013286	ENSBMSG00010013306 #22	ENSBMSG00010013323	SNX6 (ENSBMSG00010013359) #21	ENSBMSG00010013382 #18	BAZ1A (ENSBMSG00010013408) #16	ENSBMSG00010000124	SRP54 (ENSBMSG00010000198) #14	FAM177A1 (ENSBMSG00010000293) #13	PPP2R3C (ENSBMSG00010000349) #12	PRORP (ENSBMSG00010000430) #11	PSMA6 (ENSBMSG00010000487) #9	NFKBIA (ENSBMSG00010000520) #8	INSM2 (ENSBMSG00010000547) #7	ENSBMSG00010001500	BRMS1L (ENSBMSG00010001513)	ENSBMSG00010001533
Pecora	ANCESTRAL SPECIES	18	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000163541.g	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Yarkand deer	MODERN SPECIES	4	NKX2-1 (ENSCHYG00000008971)	MBIP (ENSCHYG00000008530)	BRMS1L (ENSCHYG00000008475)	RALGAPA1 (ENSCHYG00000007571)	INSM2 (ENSCHYG00000007476) #7	ENSCHYG00000007413	PRORP (ENSCHYG00000007053) #11	PPP2R3C (ENSCHYG00000006920) #12	FAM177A1 (ENSCHYG00000006869) #13	SRP54 (ENSCHYG00000006731) #14	ENSCHYG00000006663	BAZ1A (ENSCHYG00000006594) #16	CFL2 (ENSCHYG00000006518) #18	ENSCHYG00000006486	ENSCHYG00000006328 #21	EAPP (ENSCHYG00000006243) #22	ENSCHYG00000006229	SPTSSA (ENSCHYG00000006204) #26	ENSCHYG00000006192	EGLN3 (ENSCHYG00000006118) #28	NPAS3 (ENSCHYG00000005548) #30	ENSCHYG00000005433 #32	ENSCHYG00000005372 #32	ENSCHYG00000005283 #33	ENSCHYG00000005261	ENSCHYG00000005213 #34	ENSCHYG00000005175 #37	ENSCHYG00000005154	ENSCHYG00000004859	ENSCHYG00000004808	ENSCHYG00000004784
Percora_a	ANCESTRAL SPECIES	20	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000163541.g	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Bovidae	ANCESTRAL SPECIES	20	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000163541.g	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Bovinae	ANCESTRAL SPECIES	19	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a.h #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a.l.b	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00940000154690.p.b
Bos	ANCESTRAL SPECIES	18	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921.f	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a.h #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940.gb #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a.l.b	ENSGT00390000006205.b	ENSGT01100000263480.a.b.a.a.a.b.b.b.b.b.b.b.b.a.a.b.a.b.a.a.a	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Bos_b	ANCESTRAL SPECIES	18	ENSGT00510000047831	ENSGT00940000158921.f.b	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a.h #13	ENSGT00950000183010.a.b.a.a.a.a.a.b.b.i.a.b.a	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940.gb #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a.l.b	ENSGT00390000006205.b	ENSGT01100000263480.a.b.a.a.a.b.b.b.b.b.b.b.b.a.a.b.a.b.a.a.a	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Cow	MODERN SPECIES	13	BRMS1L (ENSBTAG00000018400)	RALGAPA1 (ENSBTAG00000001282)	INSM2 (ENSBTAG00000027013) #7	NFKBIA (ENSBTAG00000016683) #8	PSMA6 (ENSBTAG00000009683) #9	ENSBTAG00000049349	PRORP (ENSBTAG00000009682) #11	PPP2R3C (ENSBTAG00000009681) #12	FAM177A1 (ENSBTAG00000009680) #13	ENSBTAG00000000425	SRP54 (ENSBTAG00000019085) #14	ENSBTAG00000037938	BAZ1A (ENSBTAG00000020164) #16	CFL2 (ENSBTAG00000015053) #18	SNX6 (ENSBTAG00000012873) #21	EAPP (ENSBTAG00000003419) #22	SPTSSA (ENSBTAG00000013981) #26	EGLN3 (ENSBTAG00000008172) #28	NPAS3 (ENSBTAG00000004462) #30	AKAP6 (ENSBTAG00000017719) #32	ARHGAP5 (ENSBTAG00000027024) #33	ENSBTAG00000055201	NUBPL (ENSBTAG00000044121) #34	GPR33 (ENSBTAG00000010536) #37	ENSBTAG00000038020	HEATR5A (ENSBTAG00000022847)	HECTD1 (ENSBTAG00000032477)	AP4S1 (ENSBTAG00000017201)	STRN3 (ENSBTAG00000021845)	COCH (ENSBTAG00000021844)	SCFD1 (ENSBTAG00000017565)
Hybrid Bos Indicus	MODERN SPECIES	13	MBIP (ENSBIXG00005026348)	ENSBIXG00005026403	RALGAPA1 (ENSBIXG00005026523)	INSM2 (ENSBIXG00005026558) #7	NFKBIA (ENSBIXG00005026599) #8	PSMA6 (ENSBIXG00005004554) #9	PRORP (ENSBIXG00005026751) #11	PPP2R3C (ENSBIXG00005026776) #12	ENSBIXG00005026804 #13	ENSBIXG00005004583	SRP54 (ENSBIXG00005004590) #14	ENSBIXG00005004603	BAZ1A (ENSBIXG00005026976) #16	CFL2 (ENSBIXG00005004635) #18	SNX6 (ENSBIXG00005027072) #21	EAPP (ENSBIXG00005027140) #22	ENSBIXG00005027146	SPTSSA (ENSBIXG00005027156) #26	EGLN3 (ENSBIXG00005004670) #28	NPAS3 (ENSBIXG00005004743) #30	ENSBIXG00005027635	AKAP6 (ENSBIXG00005004751) #32	ARHGAP5 (ENSBIXG00005027783) #33	ENSBIXG00005027817	ENSBIXG00005004787	NUBPL (ENSBIXG00005027931) #34	GPR33 (ENSBIXG00005027980) #37	ENSBIXG00005027995	HEATR5A (ENSBIXG00005028101)	ENSBIXG00005028130	HECTD1 (ENSBIXG00005028215)
Bos_a	ANCESTRAL SPECIES	10	ENSGT00510000047831	ENSGT00940000158921.f	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a.h #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940.gb #21	ENSGT00940000154940.fb.a #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT00940000153431.a.l.b	ENSGT00390000006205.b	ENSGT01100000263480.a.b.a.a.a.b.b.b.b.b.b.b.b.a.a.b.a.b.a.a.a	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00940000154690.p.b
Wild yak	MODERN SPECIES	2722															ENSBMUG00000004626 #21	EAPP (ENSBMUG00000004570) #22	ENSBMUG00000004548	SPTSSA (ENSBMUG00000004541) #26
Domestic yak	MODERN SPECIES	8	ENSBGRG00000013838	RALGAPA1 (ENSBGRG00000012142)	INSM2 (ENSBGRG00000012041) #7	ENSBGRG00000011907	PSMA6 (ENSBGRG00000011146) #9	PRORP (ENSBGRG00000010633) #11	PPP2R3C (ENSBGRG00000010465) #12	ENSBGRG00000010370	FAM177A1 (ENSBGRG00000010282) #13	SRP54 (ENSBGRG00000009974) #14	ENSBGRG00000009920	BAZ1A (ENSBGRG00000009766) #16	ENSBGRG00000009716	SNX6 (ENSBGRG00000009511) #21	CFL2 (ENSBGRG00000009349) #18	EAPP (ENSBGRG00000009269) #22	SPTSSA (ENSBGRG00000009176) #26	EGLN3 (ENSBGRG00000009029) #28	ENSBGRG00000009008	NPAS3 (ENSBGRG00000008650) #30	AKAP6 (ENSBGRG00000008525) #32	ARHGAP5 (ENSBGRG00000008406) #33	ENSBGRG00000008358	ENSBGRG00000008307	NUBPL (ENSBGRG00000008223) #34	DTD2 (ENSBGRG00000008143)	HEATR5A (ENSBGRG00000007992)	ENSBGRG00000007953	HECTD1 (ENSBGRG00000007751)	AP4S1 (ENSBGRG00000007586)	STRN3 (ENSBGRG00000007105)
American bison	MODERN SPECIES	2979	PAX9 (ENSBBBG00000009458)	MBIP (ENSBBBG00000009469)	BRMS1L (ENSBBBG00000001516)	RALGAPA1 (ENSBBBG00000009495)	INSM2 (ENSBBBG00000001523) #7	NFKBIA (ENSBBBG00000009508) #8	PSMA6 (ENSBBBG00000009515) #9	PRORP (ENSBBBG00000009525) #11	PPP2R3C (ENSBBBG00000009534) #12	ENSBBBG00000009538 #13	SRP54 (ENSBBBG00000009551) #14	ENSBBBG00000007487	BAZ1A (ENSBBBG00000009578) #16	CFL2 (ENSBBBG00000009594) #18	SNX6 (ENSBBBG00000009605) #21	EAPP (ENSBBBG00000009619) #22	EGLN3 (ENSBBBG00000009629) #28
Caprinae	ANCESTRAL SPECIES	22	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000163541.g	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00910000147163	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Goat	MODERN SPECIES	13	ENSCHIG00000008222	ENSCHIG00000011615	BRMS1L (ENSCHIG00000016496)	RALGAPA1 (ENSCHIG00000021528)	INSM2 (ENSCHIG00000019716) #7	NFKBIA (ENSCHIG00000010157) #8	PSMA6 (ENSCHIG00000020801) #9	PRORP (ENSCHIG00000026248) #11	PPP2R3C (ENSCHIG00000015062) #12	FAM177A1 (ENSCHIG00000026400) #13	SRP54 (ENSCHIG00000026345) #14	ENSCHIG00000023755	BAZ1A (ENSCHIG00000019365) #16	CFL2 (ENSCHIG00000015758) #18	ENSCHIG00000017907 #21	EAPP (ENSCHIG00000022171) #22	ENSCHIG00000016213	ENSCHIG00000008804 #26	ENSCHIG00000021678	EGLN3 (ENSCHIG00000016948) #28	NPAS3 (ENSCHIG00000019397) #30	AKAP6 (ENSCHIG00000024298) #32	ARHGAP5 (ENSCHIG00000010874) #33	NUBPL (ENSCHIG00000006710) #34	GPR33 (ENSCHIG00000007857) #37	ENSCHIG00000011637	HEATR5A (ENSCHIG00000010796)	HECTD1 (ENSCHIG00000018114)	AP4S1 (ENSCHIG00000016142)	STRN3 (ENSCHIG00000019005)	COCH (ENSCHIG00000007305)
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	9	CLEC14A (ENSOARG00020011752)	SSTR1 (ENSOARG00020011703)	ENSOARG00020011587	ENSOARG00020011571	FOXA1 (ENSOARG00020011508)	MIPOL1 (ENSOARG00020011197)	SLC25A21 (ENSOARG00020010778)	PAX9 (ENSOARG00020010673)	NKX2-8 (ENSOARG00020010624)	NKX2-1 (ENSOARG00020010481)	MBIP (ENSOARG00020010152)	ENSOARG00020010080	BRMS1L (ENSOARG00020009991)	RALGAPA1 (ENSOARG00020007640)	INSM2 (ENSOARG00020007546) #7	ENSOARG00020007449 #22	NFKBIA (ENSOARG00020007336) #8	PSMA6 (ENSOARG00020006992) #11	PPP2R3C (ENSOARG00020006825) #12	FAM177A1 (ENSOARG00020006769) #13	SRP54 (ENSOARG00020006524) #14	ENSOARG00020006421	BAZ1A (ENSOARG00020006340) #16	CFL2 (ENSOARG00020006245) #18	SNX6 (ENSOARG00020005948) #21	ENSOARG00020005839 #22	ENSOARG00020005825 #26	EGLN3 (ENSOARG00020005770) #28	NPAS3 (ENSOARG00020005668) #30	AKAP6 (ENSOARG00020005604) #32	ARHGAP5 (ENSOARG00020005438) #33
Rambouillet Sheep	MODERN SPECIES	9	MBIP (ENSOARG00020010152)	ENSOARG00020010080	BRMS1L (ENSOARG00020009991)	RALGAPA1 (ENSOARG00020007640)	INSM2 (ENSOARG00020007546) #7	ENSOARG00020007449 #22	NFKBIA (ENSOARG00020007336) #8	PSMA6 (ENSOARG00020006992) #11	PPP2R3C (ENSOARG00020006825) #12	FAM177A1 (ENSOARG00020006769) #13	SRP54 (ENSOARG00020006524) #14	ENSOARG00020006421	BAZ1A (ENSOARG00020006340) #16	CFL2 (ENSOARG00020006245) #18	SNX6 (ENSOARG00020005948) #21	ENSOARG00020005839 #22	ENSOARG00020005825 #26	EGLN3 (ENSOARG00020005770) #28	NPAS3 (ENSOARG00020005668) #30	AKAP6 (ENSOARG00020005604) #32	ARHGAP5 (ENSOARG00020005438) #33	ENSOARG00020005406	NUBPL (ENSOARG00020005362) #34	GPR33 (ENSOARG00020005349) #37	DTD2 (ENSOARG00020005329)	HEATR5A (ENSOARG00020005213)	HECTD1 (ENSOARG00020005016)	AP4S1 (ENSOARG00020004957)	STRN3 (ENSOARG00020004854)	COCH (ENSOARG00020004770)	SCFD1 (ENSOARG00020004656)
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	138	ENSMMSG00000019426	LMLN (ENSMMSG00000019182)	OSBPL11 (ENSMMSG00000019129)	ENSMMSG00000019084	SNX4 (ENSMMSG00000019042)	ZNF148 (ENSMMSG00000018980)	SLC12A8 (ENSMMSG00000018899)	HEG1 (ENSMMSG00000018772)	ENSMMSG00000018667	ITGB5 (ENSMMSG00000018600)	UMPS (ENSMMSG00000018563)	KALRN (ENSMMSG00000017294)	ENSMMSG00000017181	ENSMMSG00000017146	CCDC14 (ENSMMSG00000017046)	ENSMMSG00000017003 #22	MYLK (ENSMMSG00000016805)	HACD2 (ENSMMSG00000016733)	ADCY5 (ENSMMSG00000016606)	SEC22A (ENSMMSG00000016529)	PDIA5 (ENSMMSG00000016449)	SEMA5B (ENSMMSG00000016391)	SLC49A4 (ENSMMSG00000016322)	HSPBAP1 (ENSMMSG00000016268)	PARP14 (ENSMMSG00000016234)	DTX3L (ENSMMSG00000016186)	PARP9 (ENSMMSG00000016081)	KPNA1 (ENSMMSG00000016044)	WDR5B (ENSMMSG00000016033)	ENSMMSG00000016018	FAM162A (ENSMMSG00000015960)
Siberian musk deer	MODERN SPECIES	392	BRMS1L (ENSMMSG00000015961)	RALGAPA1 (ENSMMSG00000016068)	INSM2 (ENSMMSG00000016329) #7	ENSMMSG00000016348 #8	PSMA6 (ENSMMSG00000016417) #9	PRORP (ENSMMSG00000015820) #11	PPP2R3C (ENSMMSG00000015971) #12	FAM177A1 (ENSMMSG00000016070) #13	ENSMMSG00000016102	SRP54 (ENSMMSG00000016134) #14	ENSMMSG00000016259	BAZ1A (ENSMMSG00000016300) #16	CFL2 (ENSMMSG00000016590) #18	ENSMMSG00000016650	SNX6 (ENSMMSG00000016683) #21	ENSMMSG00000016793 #22	SPTSSA (ENSMMSG00000016814) #26	ENSMMSG00000016824	EGLN3 (ENSMMSG00000016837) #28	NPAS3 (ENSMMSG00000016904) #30	AKAP6 (ENSMMSG00000017405) #32	ARHGAP5 (ENSMMSG00000017499) #33	NUBPL (ENSMMSG00000017580) #34
Suina	ANCESTRAL SPECIES	30	ENSGT00510000047831	ENSGT00940000158921	ENSGT01070000257281	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845
Pig	MODERN SPECIES	15	ENSSSCG00000044591	BRMS1L (ENSSSCG00000001947)	RALGAPA1 (ENSSSCG00000032377)	ENSSSCG00000047970	INSM2 (ENSSSCG00000001949) #7	NFKBIA (ENSSSCG00000001952) #8	PSMA6 (ENSSSCG00000054516) #9	PRORP (ENSSSCG00000001950) #11	PPP2R3C (ENSSSCG00000031498) #12	FAM177A1 (ENSSSCG00000034753) #13	SRP54 (ENSSSCG00000001955) #14	ENSSSCG00000062223	BAZ1A (ENSSSCG00000001958) #16	CFL2 (ENSSSCG00000001959) #18	SNX6 (ENSSSCG00000040912) #21	EAPP (ENSSSCG00000001960) #22	SPTSSA (ENSSSCG00000060304) #26	EGLN3 (ENSSSCG00000001963) #28	ENSSSCG00000036652 #29	NPAS3 (ENSSSCG00000001964) #30	AKAP6 (ENSSSCG00000024517) #32	ARHGAP5 (ENSSSCG00000001966) #33	NUBPL (ENSSSCG00000001968) #34	ENSSSCG00000044304	GPR33 (ENSSSCG00000025131) #37	DTD2 (ENSSSCG00000026663)	ENSSSCG00000061987	ENSSSCG00000001970	HECTD1 (ENSSSCG00000001971)	AP4S1 (ENSSSCG00000001972)	STRN3 (ENSSSCG00000040657)
Chacoan peccary	MODERN SPECIES	883	NKX2-1 (ENSCWAG00000021794)	MBIP (ENSCWAG00000021783)	BRMS1L (ENSCWAG00000021744)	RALGAPA1 (ENSCWAG00000021428)	INSM2 (ENSCWAG00000021348) #7	NFKBIA (ENSCWAG00000021339) #8	PSMA6 (ENSCWAG00000021327) #9	PRORP (ENSCWAG00000021308) #11	PPP2R3C (ENSCWAG00000021289) #12	FAM177A1 (ENSCWAG00000021278) #13	SRP54 (ENSCWAG00000021240) #14	ENSCWAG00000021220	BAZ1A (ENSCWAG00000021194) #16	CFL2 (ENSCWAG00000021171) #18	SNX6 (ENSCWAG00000021128) #21	EAPP (ENSCWAG00000021095) #22	SPTSSA (ENSCWAG00000021089) #26	EGLN3 (ENSCWAG00000021081) #28	NPAS3 (ENSCWAG00000020800) #30	AKAP6 (ENSCWAG00000020720) #32	ARHGAP5 (ENSCWAG00000020683) #33	NUBPL (ENSCWAG00000020665) #34	GPR33 (ENSCWAG00000020655) #37	DTD2 (ENSCWAG00000020644)	HEATR5A (ENSCWAG00000020563)	HECTD1 (ENSCWAG00000020463)	AP4S1 (ENSCWAG00000020431)	STRN3 (ENSCWAG00000020364)	COCH (ENSCWAG00000020293)	SCFD1 (ENSCWAG00000020229)	G2E3 (ENSCWAG00000020142)
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Carnivora	ANCESTRAL SPECIES		ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Caniformia	ANCESTRAL SPECIES	15	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Caniformia_b	ANCESTRAL SPECIES	14	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845
Ursidae	ANCESTRAL SPECIES	10	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00390000011943.a.a.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845
Ursus	ANCESTRAL SPECIES	202																ENSGT00390000001332 #22	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000016972.a.a.b.b.a	ENSGT00390000006205.b	ENSGT00390000011943.a.a.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845
Polar bear	MODERN SPECIES	413																EAPP (ENSUMAG00000010403) #22	EGLN3 (ENSUMAG00000010391) #28	NPAS3 (ENSUMAG00000010286) #30	AKAP6 (ENSUMAG00000010177) #32	ENSUMAG00000010161	ARHGAP5 (ENSUMAG00000010158) #33	NUBPL (ENSUMAG00000010133) #34	GPR33 (ENSUMAG00000010119) #37	ENSUMAG00000010115	ENSUMAG00000010111	HEATR5A (ENSUMAG00000007915)	ENSUMAG00000007548	HECTD1 (ENSUMAG00000007523)	AP4S1 (ENSUMAG00000007515)	STRN3 (ENSUMAG00000006765)	COCH (ENSUMAG00000006665)
Giant Panda	MODERN SPECIES	12	NKX2-1 (ENSAMEG00000031459)	MBIP (ENSAMEG00000013537)	BRMS1L (ENSAMEG00000015738)	RALGAPA1 (ENSAMEG00000015649)	INSM2 (ENSAMEG00000019215) #7	NFKBIA (ENSAMEG00000015629) #8	PSMA6 (ENSAMEG00000015614) #9	PRORP (ENSAMEG00000015610) #11	PPP2R3C (ENSAMEG00000015586) #12	FAM177A1 (ENSAMEG00000015581) #13	SRP54 (ENSAMEG00000015544) #14	ENSAMEG00000015534	BAZ1A (ENSAMEG00000015512) #16	CFL2 (ENSAMEG00000015508) #18	SNX6 (ENSAMEG00000015476) #21	EAPP (ENSAMEG00000006454) #22	SPTSSA (ENSAMEG00000028071) #26	EGLN3 (ENSAMEG00000023682) #28	NPAS3 (ENSAMEG00000029238) #30	AKAP6 (ENSAMEG00000015685) #32	ARHGAP5 (ENSAMEG00000015709) #33	NUBPL (ENSAMEG00000015724) #34	GPR33 (ENSAMEG00000019764) #37	DTD2 (ENSAMEG00000024284)	HEATR5A (ENSAMEG00000015736)	ENSAMEG00000028378	HECTD1 (ENSAMEG00000015770)	AP4S1 (ENSAMEG00000015823)	STRN3 (ENSAMEG00000015829)	COCH (ENSAMEG00000015859)	SCFD1 (ENSAMEG00000005072)
Mustelinae	ANCESTRAL SPECIES	32	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845
Ferret	DUPLICATION
Ferret	MODERN SPECIES	259				ENSMPUG00000018691	VSTM5 (ENSMPUG00000010671)	MED17 (ENSMPUG00000010667)	C11orf54 (ENSMPUG00000010663)	TAF1D (ENSMPUG00000010659)	CEP295 (ENSMPUG00000010628)	ENSMPUG00000010626	ENSMPUG00000010589	SLC36A4 (ENSMPUG00000010579)	ENSMPUG00000010574	ENSMPUG00000010572	FAT3 (ENSMPUG00000010556)	ENSMPUG00000018690 #22	ENSMPUG00000018689	CHORDC1 (ENSMPUG00000010548)	NAALAD2 (ENSMPUG00000010401)	FOLH1 (ENSMPUG00000010390)	NOX4 (ENSMPUG00000010385)	TYR (ENSMPUG00000010381)	GRM5 (ENSMPUG00000010375)	CTSC (ENSMPUG00000010370)	RAB38 (ENSMPUG00000010366)	TMEM135 (ENSMPUG00000010358)	ENSMPUG00000010356	FZD4 (ENSMPUG00000010353)	PRSS23 (ENSMPUG00000018688)	ME3 (ENSMPUG00000010166)	ENSMPUG00000018687
Ferret	MODERN SPECIES	384																ENSMPUG00000001029 #22	EGLN3 (ENSMPUG00000001043) #28	NPAS3 (ENSMPUG00000001045) #30	ENSMPUG00000001046	AKAP6 (ENSMPUG00000001051) #32	ARHGAP5 (ENSMPUG00000001057) #33	NUBPL (ENSMPUG00000001061) #34	GPR33 (ENSMPUG00000019234) #37	DTD2 (ENSMPUG00000001065)	HEATR5A (ENSMPUG00000001067)
American mink	MODERN SPECIES	84			RALGAPA1 (ENSNVIG00000001947)	INSM2 (ENSNVIG00000002180) #7	NFKBIA (ENSNVIG00000002189) #8	PSMA6 (ENSNVIG00000002214) #9	PRORP (ENSNVIG00000002327) #11	PPP2R3C (ENSNVIG00000002372) #12	FAM177A1 (ENSNVIG00000002414) #13	ENSNVIG00000002439	SRP54 (ENSNVIG00000002461) #14	ENSNVIG00000002515	BAZ1A (ENSNVIG00000002565) #16	CFL2 (ENSNVIG00000002744) #18	SNX6 (ENSNVIG00000002824) #21	EAPP (ENSNVIG00000002902) #22	SPTSSA (ENSNVIG00000002933) #26	ENSNVIG00000002935	EGLN3 (ENSNVIG00000002975) #28	NPAS3 (ENSNVIG00000002999) #30	AKAP6 (ENSNVIG00000003054) #32	ARHGAP5 (ENSNVIG00000003107) #33	NUBPL (ENSNVIG00000003207) #34	GPR33 (ENSNVIG00000003227) #37	DTD2 (ENSNVIG00000003240)	F5H619 (ENSNVIG00000003257)	ENSNVIG00000003418	HECTD1 (ENSNVIG00000003432)	AP4S1 (ENSNVIG00000003530)	STRN3 (ENSNVIG00000003579)	COCH (ENSNVIG00000003618)
Canidae	DUPLICATION
Canidae	ANCESTRAL SPECIES	4	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d.j #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332.w #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00940000165919	ENSGT00970000193421.B.h.a	ENSGT00950000183095.a.a	ENSGT00940000159386
Canis_lupus	ANCESTRAL SPECIES	8	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d.i.a.b #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332.w #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a.o	ENSGT00390000006205.b	ENSGT00390000008918.a.a	ENSGT00940000156572	ENSGT00940000165919	ENSGT00970000193421.B.h.a	ENSGT00950000183095.a.a
Dingo	MODERN SPECIES	161	MBIP (ENSCAFG00020022316)	BRMS1L (ENSCAFG00020022326)	RALGAPA1 (ENSCAFG00020022394)	INSM2 (ENSCAFG00020023381) #7	ENSCAFG00020023383	ENSCAFG00020023389 #9	PRORP (ENSCAFG00020023411) #11	PPP2R3C (ENSCAFG00020023418) #12	FAM177A1 (ENSCAFG00020023422) #13	SRP54 (ENSCAFG00020023427) #14	ENSCAFG00020023434	BAZ1A (ENSCAFG00020023452) #16	CFL2 (ENSCAFG00020023554) #18	ENSCAFG00020023557 #21	ENSCAFG00020023570 #21	EAPP (ENSCAFG00020023572) #22	SPTSSA (ENSCAFG00020023575) #26	EGLN3 (ENSCAFG00020023576) #28	NPAS3 (ENSCAFG00020023578) #30	AKAP6 (ENSCAFG00020023612) #32	ARHGAP5 (ENSCAFG00020023643) #33	ENSCAFG00020023647	ENSCAFG00020023650	ENSCAFG00020023655 #34	ENSCAFG00020023659	GPR33 (ENSCAFG00020023662) #37	ENSCAFG00020023663	HEATR5A (ENSCAFG00020023674)	ENSCAFG00020023694	HECTD1 (ENSCAFG00020023723)	AP4S1 (ENSCAFG00020024081)
Dog	MODERN SPECIES	36	MBIP (ENSCAFG00845002536)	BRMS1L (ENSCAFG00845002506)	RALGAPA1 (ENSCAFG00845002236)	INSM2 (ENSCAFG00845002072) #7	NFKBIA (ENSCAFG00845002047) #8	PSMA6 (ENSCAFG00845001929) #9	PSMA6 (ENSCAFG00845001872) #11	PPP2R3C (ENSCAFG00845001831) #12	FAM177A1 (ENSCAFG00845001803) #13	SRP54 (ENSCAFG00845001751) #14	ENSCAFG00845001684	BAZ1A (ENSCAFG00845001639) #16	CFL2 (ENSCAFG00845001611) #18	ENSCAFG00845001579 #21	ENSCAFG00845001517 #21	EAPP (ENSCAFG00845001503) #22	ENSCAFG00845001492 #26	ENSCAFG00845001464	EGLN3 (ENSCAFG00845012583) #28	NPAS3 (ENSCAFG00845012355) #30	AKAP6 (ENSCAFG00845012171) #32	ARHGAP5 (ENSCAFG00845012045) #33	NUBPL (ENSCAFG00845011856) #34	GPR33 (ENSCAFG00845011804) #37	DTD2 (ENSCAFG00845011795)	ENSCAFG00845011772	HEATR5A (ENSCAFG00845011579)	HECTD1 (ENSCAFG00845011087)	ENSCAFG00845011023	AP4S1 (ENSCAFG00845010937)	STRN3 (ENSCAFG00845010851)
Red fox	MODERN SPECIES	65																ENSVVUG00000029955 #22	ENSVVUG00000029949 #28	NPAS3 (ENSVVUG00000029947) #30	AKAP6 (ENSVVUG00000029932) #32	ENSVVUG00000029926	ARHGAP5 (ENSVVUG00000029922) #33	ENSVVUG00000029921	NUBPL (ENSVVUG00000029910) #34	ENSVVUG00000029909	GPR33 (ENSVVUG00000029908) #37	DTD2 (ENSVVUG00000029907)	HEATR5A (ENSVVUG00000029806)	HECTD1 (ENSVVUG00000029612)	ENSVVUG00000029588	ENSVVUG00000029587	STRN3 (ENSVVUG00000029456)
Canidae	ANCESTRAL SPECIES																	ENSGT00390000001332.x #22
Red fox	MODERN SPECIES	16	NAGK (ENSVVUG00000007503)	PAIP2B (ENSVVUG00000007493)	ZNF638 (ENSVVUG00000007369)	DYSF (ENSVVUG00000007163)	CYP26B1 (ENSVVUG00000007121)	EXOC6B (ENSVVUG00000006974)	SPR (ENSVVUG00000006933)	EMX1 (ENSVVUG00000006929)	SFXN5 (ENSVVUG00000006892)	RAB11FIP5 (ENSVVUG00000006886)	SMYD5 (ENSVVUG00000006859)	PRADC1 (ENSVVUG00000006845)	ENSVVUG00000005352	FBXO41 (ENSVVUG00000005266)	EGR4 (ENSVVUG00000005259)	ENSVVUG00000005256 #22	ALMS1 (ENSVVUG00000004856)	ENSVVUG00000004791	TPRKB (ENSVVUG00000004786)	DUSP11 (ENSVVUG00000004768)	CUNH2orf78 (ENSVVUG00000004761)	STAMBP (ENSVVUG00000004755)	ACTG2 (ENSVVUG00000004752)	DGUOK (ENSVVUG00000004734)	TET3 (ENSVVUG00000004693)	BOLA3 (ENSVVUG00000004673)	MOB1A (ENSVVUG00000004664)	MTHFD2 (ENSVVUG00000004659)	SLC4A5 (ENSVVUG00000004630)	ENSVVUG00000004625	DCTN1 (ENSVVUG00000004552)
Felidae	ANCESTRAL SPECIES	1	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a.d	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Panthera	ANCESTRAL SPECIES	3	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B.c.a	ENSGT00950000183095.a.a.d	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Tiger	MODERN SPECIES	578																EAPP (ENSPTIG00000018266) #22	EGLN3 (ENSPTIG00000017846) #28	NPAS3 (ENSPTIG00000015688) #30	AKAP6 (ENSPTIG00000012016) #32	ARHGAP5 (ENSPTIG00000011092) #33	NUBPL (ENSPTIG00000009627) #34	DTD2 (ENSPTIG00000008518)	HEATR5A (ENSPTIG00000003357)	ENSPTIG00000000922	HECTD1 (ENSPTIG00000020313)	ENSPTIG00000019757	STRN3 (ENSPTIG00000018841)	COCH (ENSPTIG00000017113)	SCFD1 (ENSPTIG00000015762)	G2E3 (ENSPTIG00000013202)	PRKD1 (ENSPTIG00000011129)
Panthera_a	ANCESTRAL SPECIES	7	ENSGT00940000165456	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B.c.a	ENSGT00950000183095.a.a.c	ENSGT00970000193421.B.d	ENSGT00950000183095.a.a.d	ENSGT00940000159386
leopard	MODERN SPECIES	112																EAPP (ENSPPRG00000009599) #22	EGLN3 (ENSPPRG00000009618) #28	NPAS3 (ENSPPRG00000010049) #30	AKAP6 (ENSPPRG00000010405) #32	ARHGAP5 (ENSPPRG00000010531) #33	ENSPPRG00000010606	NUBPL (ENSPPRG00000010686) #34	DTD2 (ENSPPRG00000010899)	HEATR5A (ENSPPRG00000010977)	HECTD1 (ENSPPRG00000011166)	ENSPPRG00000011288	ENSPPRG00000011315	ENSPPRG00000011448	COCH (ENSPPRG00000011542)	ENSPPRG00000011631	SCFD1 (ENSPPRG00000011656)
lion	MODERN SPECIES	6	RALGAPA1 (ENSPLOG00000002123)	INSM2 (ENSPLOG00000002008) #7	ENSPLOG00000001985	ENSPLOG00000001964	ENSPLOG00000001956	NFKBIA (ENSPLOG00000001934) #8	PSMA6 (ENSPLOG00000001875) #9	PRORP (ENSPLOG00000001810) #11	PPP2R3C (ENSPLOG00000001758) #12	FAM177A1 (ENSPLOG00000001730) #13	SRP54 (ENSPLOG00000001676) #14	ENSPLOG00000001640	BAZ1A (ENSPLOG00000001606) #16	ENSPLOG00000001550 #18	ENSPLOG00000001525 #21	EAPP (ENSPLOG00000001486) #22	SPTSSA (ENSPLOG00000001474) #26	ENSPLOG00000001468	EGLN3 (ENSPLOG00000001437) #28	ENSPLOG00000001420	NPAS3 (ENSPLOG00000001299) #30	AKAP6 (ENSPLOG00000001171) #32	ARHGAP5 (ENSPLOG00000001022) #33	NUBPL (ENSPLOG00000000974) #34	GPR33 (ENSPLOG00000000949) #37	DTD2 (ENSPLOG00000000933)	HEATR5A (ENSPLOG00000000896)	HECTD1 (ENSPLOG00000000806)	AP4S1 (ENSPLOG00000000730)	STRN3 (ENSPLOG00000000594)	COCH (ENSPLOG00000000512)
Cat	MODERN SPECIES	237	BRMS1L (ENSFCAG00000024948)	RALGAPA1 (ENSFCAG00000012361)	INSM2 (ENSFCAG00000025118) #7	ENSFCAG00000035826	ENSFCAG00000050300	NFKBIA (ENSFCAG00000006671) #8	PSMA6 (ENSFCAG00000026276) #9	PRORP (ENSFCAG00000004383) #11	PPP2R3C (ENSFCAG00000030690) #12	FAM177A1 (ENSFCAG00000043712) #13	SRP54 (ENSFCAG00000032033) #14	ENSFCAG00000029463	BAZ1A (ENSFCAG00000024924) #16	CFL2 (ENSFCAG00000008480) #18	SNX6 (ENSFCAG00000018851) #21	EAPP (ENSFCAG00000030251) #22	SPTSSA (ENSFCAG00000042893) #26	ENSFCAG00000023772	EGLN3 (ENSFCAG00000040826) #28	NPAS3 (ENSFCAG00000041731) #30	AKAP6 (ENSFCAG00000010934) #32	ARHGAP5 (ENSFCAG00000024536) #33	NUBPL (ENSFCAG00000024538) #34	GPR33 (ENSFCAG00000030877) #37	DTD2 (ENSFCAG00000031441)	HEATR5A (ENSFCAG00000014756)	ENSFCAG00000038310	HECTD1 (ENSFCAG00000001734)	AP4S1 (ENSFCAG00000005738)	STRN3 (ENSFCAG00000013708)	COCH (ENSFCAG00000011638)
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Chiroptera	ANCESTRAL SPECIES	34	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Microchiroptera	ANCESTRAL SPECIES	29	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Microbat	MODERN SPECIES	959	ENSMLUG00000004184	BRMS1L (ENSMLUG00000008089)	RALGAPA1 (ENSMLUG00000007979)	ENSMLUG00000023852	INSM2 (ENSMLUG00000026985) #7	ENSMLUG00000004519	PSMA6 (ENSMLUG00000010228) #9	PRORP (ENSMLUG00000010205) #11	PPP2R3C (ENSMLUG00000024559) #12	FAM177A1 (ENSMLUG00000010187) #13	SRP54 (ENSMLUG00000008958) #14	ENSMLUG00000023750	BAZ1A (ENSMLUG00000006672) #16	SNX6 (ENSMLUG00000007049) #21	ENSMLUG00000030716	EAPP (ENSMLUG00000013814) #22	SPTSSA (ENSMLUG00000013821) #26	EGLN3 (ENSMLUG00000014716) #28	NPAS3 (ENSMLUG00000016973) #30	AKAP6 (ENSMLUG00000007138) #32	ARHGAP5 (ENSMLUG00000026153) #33	NUBPL (ENSMLUG00000004368) #34	DTD2 (ENSMLUG00000005789)	HEATR5A (ENSMLUG00000005763)	HECTD1 (ENSMLUG00000013003)	AP4S1 (ENSMLUG00000011671)	STRN3 (ENSMLUG00000011642)	COCH (ENSMLUG00000011622)	SCFD1 (ENSMLUG00000000542)	G2E3 (ENSMLUG00000000531)	ENSMLUG00000027139
Greater horseshoe bat	MODERN SPECIES	24	BRMS1L (ENSRFEG00010003180)	RALGAPA1 (ENSRFEG00010003084)	INSM2 (ENSRFEG00010003015) #7	ENSRFEG00010002998	NFKBIA (ENSRFEG00010002978) #8	ENSRFEG00010002929 #9	PRORP (ENSRFEG00010002863) #11	PPP2R3C (ENSRFEG00010002782) #12	FAM177A1 (ENSRFEG00010002737) #13	SRP54 (ENSRFEG00010002671) #14	ENSRFEG00010002630	BAZ1A (ENSRFEG00010002589) #16	CFL2 (ENSRFEG00010002557) #18	ENSRFEG00010002540	SNX6 (ENSRFEG00010002499) #21	EAPP (ENSRFEG00010002434) #22	SPTSSA (ENSRFEG00010002421) #26	EGLN3 (ENSRFEG00010002399) #28	NPAS3 (ENSRFEG00010002279) #30	AKAP6 (ENSRFEG00010002160) #32	ENSRFEG00010002109	ARHGAP5 (ENSRFEG00010002064) #33	NUBPL (ENSRFEG00010002035) #34	GPR33 (ENSRFEG00010002026) #37	DTD2 (ENSRFEG00010002009)	HEATR5A (ENSRFEG00010001860)	HECTD1 (ENSRFEG00010001711)	AP4S1 (ENSRFEG00010001649)	STRN3 (ENSRFEG00010001558)	COCH (ENSRFEG00010001503)	ENSRFEG00010001476
Megabat	MODERN SPECIES	5313																EAPP (ENSPVAG00000010091) #22
Equus	ANCESTRAL SPECIES	54	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT01100000265618	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00440000034918.q.b.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845
Donkey	MODERN SPECIES	11	BRMS1L (ENSEASG00005007558)	RALGAPA1 (ENSEASG00005002495)	INSM2 (ENSEASG00005002073) #7	NFKBIA (ENSEASG00005002070) #8	PSMA6 (ENSEASG00005002068) #9	PRORP (ENSEASG00005002065) #11	PPP2R3C (ENSEASG00005002062) #12	FAM177A1 (ENSEASG00005002060) #13	SRP54 (ENSEASG00005002057) #14	ENSEASG00005002053	ENSEASG00005002050	ENSEASG00005001804 #16	CFL2 (ENSEASG00005001781) #18	ENSEASG00005034847 #21	ENSEASG00005009746 #21	EAPP (ENSEASG00005026397) #22	SPTSSA (ENSEASG00005026736) #26	EGLN3 (ENSEASG00005028459) #28	NPAS3 (ENSEASG00005005778) #30	AKAP6 (ENSEASG00005005719) #32	ARHGAP5 (ENSEASG00005005703) #33	NUBPL (ENSEASG00005005696) #34	GPR33 (ENSEASG00005005695) #37	DTD2 (ENSEASG00005028650)	HEATR5A (ENSEASG00005003563)	ENSEASG00005003251	HECTD1 (ENSEASG00005002686)	AP4S1 (ENSEASG00005034840)	STRN3 (ENSEASG00005001153)	COCH (ENSEASG00005000969)	SCFD1 (ENSEASG00005000580)
Horse	MODERN SPECIES		MBIP (ENSECAG00000022491)	BRMS1L (ENSECAG00000013452)	RALGAPA1 (ENSECAG00000024960)	INSM2 (ENSECAG00000034097) #7	NFKBIA (ENSECAG00000023420) #8	PSMA6 (ENSECAG00000022437) #9	PRORP (ENSECAG00000019221) #11	PPP2R3C (ENSECAG00000015352) #12	FAM177A1 (ENSECAG00000012435) #13	SRP54 (ENSECAG00000018042) #14	ENSECAG00000015906	ENSECAG00000054257	BAZ1A (ENSECAG00000007751) #16	CFL2 (ENSECAG00000000511) #18	SNX6 (ENSECAG00000012176) #21	EAPP (ENSECAG00000009667) #22	SPTSSA (ENSECAG00000034886) #26	EGLN3 (ENSECAG00000005086) #28	NPAS3 (ENSECAG00000021888) #30	ENSECAG00000044670	AKAP6 (ENSECAG00000019940) #32	ENSECAG00000048271	ENSECAG00000046933	ARHGAP5 (ENSECAG00000017271) #33	ENSECAG00000033699	ENSECAG00000058754	NUBPL (ENSECAG00000016526) #34	GPR33 (ENSECAG00000039612) #37	DTD2 (ENSECAG00000016348)	HEATR5A (ENSECAG00000015912)	ENSECAG00000031422
Atlantogenata	ANCESTRAL SPECIES	8	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Afrotheria	ANCESTRAL SPECIES	6	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Afrotheria_a	ANCESTRAL SPECIES	6	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000162733 #8	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT01020000230438.B.b.b.a #37	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Hyrax	MODERN SPECIES	2117																EAPP (ENSPCAG00000002226) #22
Elephant	MODERN SPECIES	602	NKX2-1 (ENSLAFG00000028846)	MBIP (ENSLAFG00000013070)	BRMS1L (ENSLAFG00000017810)	RALGAPA1 (ENSLAFG00000008245)	INSM2 (ENSLAFG00000008242) #7	NFKBIA (ENSLAFG00000018611) #8	PSMA6 (ENSLAFG00000017359) #9	PRORP (ENSLAFG00000009871) #11	ENSLAFG00000009868 #12	FAM177A1 (ENSLAFG00000022331) #13	SRP54 (ENSLAFG00000012007) #14	ENSLAFG00000025618	BAZ1A (ENSLAFG00000010581) #16	CFL2 (ENSLAFG00000010579) #18	SNX6 (ENSLAFG00000010573) #21	EAPP (ENSLAFG00000010570) #22	SPTSSA (ENSLAFG00000030948) #26	EGLN3 (ENSLAFG00000007342) #28	NPAS3 (ENSLAFG00000007169) #30	AKAP6 (ENSLAFG00000000717) #32	ARHGAP5 (ENSLAFG00000012386) #33	NUBPL (ENSLAFG00000004185) #34	GPR33 (ENSLAFG00000031980) #37	DTD2 (ENSLAFG00000018559)	HEATR5A (ENSLAFG00000001023)	HECTD1 (ENSLAFG00000005491)	AP4S1 (ENSLAFG00000005485)	STRN3 (ENSLAFG00000012349)	COCH (ENSLAFG00000012342)	SCFD1 (ENSLAFG00000006117)	G2E3 (ENSLAFG00000005684)
Tenrec	MODERN SPECIES	14274																EAPP (ENSETEG00000009023) #22
Xenarthra	ANCESTRAL SPECIES																	ENSGT00390000001332 #22
Sloth	MODERN SPECIES	2330																EAPP (ENSCHOG00000005412) #22
Armadillo	MODERN SPECIES	2602																EAPP (ENSDNOG00000046713) #22	ENSDNOG00000018790	EGLN3 (ENSDNOG00000036494) #28	NPAS3 (ENSDNOG00000048909) #30	AKAP6 (ENSDNOG00000047853) #32	ARHGAP5 (ENSDNOG00000011488) #33
Marsupialia	ANCESTRAL SPECIES	9													ENSGT00940000164663	ENSGT01050000244936.d.a.a	ENSGT01030000234536.b.b.a	ENSGT00390000001332 #22	ENSGT00940000161491.d	ENSGT00940000162793	ENSGT00940000163076	ENSGT00940000161516	ENSGT00390000003866.a.b	ENSGT00390000011474	ENSGT00940000162342	ENSGT00940000158683.b	ENSGT01030000234573.B.c.a	ENSGT00950000183209.b.b	ENSGT00940000155720	ENSGT00390000010349.a.a	ENSGT00940000160944	ENSGT00950000183136.a.b	ENSGT00530000063867.a.b
Opossum	MODERN SPECIES		PCBD2 (ENSMODG00000038053)	PITX1 (ENSMODG00000048877)	MACROH2A1 (ENSMODG00000014397)	TIFAB (ENSMODG00000037601)	CXCL14 (ENSMODG00000014463)	SLC25A48 (ENSMODG00000014470)	PTGER2 (ENSMODG00000014473)	TXNDC16 (ENSMODG00000014477)	GPR137C (ENSMODG00000014483)	ENSMODG00000036920	PSMC6 (ENSMODG00000014500)	STYX (ENSMODG00000029372)	GNPNAT1 (ENSMODG00000014505)	ENSMODG00000043319	SNX6 (ENSMODG00000014517) #21	EAPP (ENSMODG00000014525) #22	ENSMODG00000014528 #26	ENSMODG00000045965 #26	ENSMODG00000023887	ENSMODG00000023886	ENSMODG00000038794	ENSMODG00000014551	ENSMODG00000023888	ENSMODG00000014576	ENSMODG00000014577	ENSMODG00000040125	ENSMODG00000014596	ENSMODG00000023889	ENSMODG00000014545	ENSMODG00000014580	ENSMODG00000046961
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00390000007341.a	ENSGT00510000048466	ENSGT00390000012435	ENSGT00940000157509	ENSGT00940000157150	ENSGT00390000018516	ENSGT00390000004717	ENSGT00950000182834.A.a.a	ENSGT00390000008920.c.a	ENSGT00660000095541.a.b	ENSGT00940000156106	ENSGT00940000158704	ENSGT00940000158296	ENSGT00940000155369.A	ENSGT00940000154940 #21	ENSGT00390000001332 #22
Diprotodontia	ANCESTRAL SPECIES																	ENSGT00390000001332 #22
Diprotodontia_a	ANCESTRAL SPECIES																	ENSGT00390000001332 #22
koala	MODERN SPECIES	105													ENSPCIG00000024435	ENSPCIG00000033208 #26	ENSPCIG00000018357	EAPP (ENSPCIG00000018355) #22	ENSPCIG00000037042 #26	SNX6 (ENSPCIG00000009058) #21	MDGA2 (ENSPCIG00000012334)	LRFN5 (ENSPCIG00000012328)	ATL1 (ENSPCIG00000012325)	SAV1 (ENSPCIG00000012324)	ENSPCIG00000012321	GMFB (ENSPCIG00000012315)	ENSPCIG00000012314	ENSPCIG00000012313	NEMF (ENSPCIG00000015034)	KLHDC2 (ENSPCIG00000012310)	KLHDC1 (ENSPCIG00000012308)	POLE2 (ENSPCIG00000011901)	ENSPCIG00000011887
Wallaby	MODERN SPECIES	3522																ENSMEUG00000008331 #22
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000024428	ENSSHAG00000005447 #9	PRORP (ENSSHAG00000004793) #11	PPP2R3C (ENSSHAG00000004348) #12	ENSSHAG00000023976 #13	ENSSHAG00000000671 #14	ENSSHAG00000001967	ENSSHAG00000025205	ENSSHAG00000000762	ENSSHAG00000002053	ENSSHAG00000003890	ENSSHAG00000024873	ENSSHAG00000003743	ENSSHAG00000003214	ENSSHAG00000028625 #21	ENSSHAG00000030048 #22	ENSSHAG00000031274	ENSSHAG00000002490	ENSSHAG00000023080	ENSSHAG00000031263	ENSSHAG00000029628	ENSSHAG00000024941	ENSSHAG00000000466	ENSSHAG00000000457	ENSSHAG00000022138	ENSSHAG00000031448	ENSSHAG00000026221	ENSSHAG00000022305	ENSSHAG00000002300	ENSSHAG00000006262	ENSSHAG00000005558
Platypus	MODERN SPECIES	5	SLC25A21 (ENSOANG00000014067)	PAX9 (ENSOANG00000014065)	NKX2-1 (ENSOANG00000043116)	MBIP (ENSOANG00000014064)	BRMS1L (ENSOANG00000014063)	RALGAPA1 (ENSOANG00000014058)	NFKBIA (ENSOANG00000043305)	PSMA6 (ENSOANG00000014057) #9	PRORP (ENSOANG00000049280) #11	PPP2R3C (ENSOANG00000036349) #12	FAM177A1 (ENSOANG00000014053) #13	SRP54 (ENSOANG00000041370) #14	ENSOANG00000014050	BAZ1A (ENSOANG00000014049) #16	SNX6 (ENSOANG00000042198) #21	EAPP (ENSOANG00000049496) #22	SPTSSA (ENSOANG00000043145) #26	EGLN3 (ENSOANG00000037294) #28	ENSOANG00000049968	NPAS3 (ENSOANG00000014044) #30	AKAP6 (ENSOANG00000014040) #32	ARHGAP5 (ENSOANG00000014039) #33	NUBPL (ENSOANG00000014034) #34	DTD2 (ENSOANG00000014038)	HEATR5A (ENSOANG00000014036)	HECTD1 (ENSOANG00000014033)	AP4S1 (ENSOANG00000039192)	STRN3 (ENSOANG00000014029)	COCH (ENSOANG00000014025)	SCFD1 (ENSOANG00000014020)	G2E3 (ENSOANG00000014019)
Sauria	ANCESTRAL SPECIES	3	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Archelosauria	ANCESTRAL SPECIES	2	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Archosauria	ANCESTRAL SPECIES	5	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Aves	ANCESTRAL SPECIES	2	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Neognathae	ANCESTRAL SPECIES	4	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Neognathae_b	ANCESTRAL SPECIES	6	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845
Passeriformes	ANCESTRAL SPECIES	5	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845
Great tit	MODERN SPECIES	25	NKX2-8 (ENSPMJG00000016673)	NKX2-1 (ENSPMJG00000016671)	MBIP (ENSPMJG00000016669)	BRMS1L (ENSPMJG00000016668)	RALGAPA1 (ENSPMJG00000016667)	ENSPMJG00000016665	PSMA6 (ENSPMJG00000016664) #9	PRORP (ENSPMJG00000016663) #11	PPP2R3C (ENSPMJG00000016662) #12	FAM177A1 (ENSPMJG00000016661) #13	SRP54 (ENSPMJG00000016660) #14	ENSPMJG00000016659	BAZ1A (ENSPMJG00000016658) #16	CFL2 (ENSPMJG00000016657) #18	SNX6 (ENSPMJG00000016656) #21	EAPP (ENSPMJG00000016655) #22	SPTSSA (ENSPMJG00000016654) #26	EGLN3 (ENSPMJG00000016652) #28	NPAS3 (ENSPMJG00000016650) #30	AKAP6 (ENSPMJG00000016649) #32	ARHGAP5 (ENSPMJG00000016648) #33	NUBPL (ENSPMJG00000016645) #34	ENSPMJG00000016644	DTD2 (ENSPMJG00000016643)	HEATR5A (ENSPMJG00000016642)	HECTD1 (ENSPMJG00000016624)	AP4S1 (ENSPMJG00000016623)	STRN3 (ENSPMJG00000016622)	COCH (ENSPMJG00000016621)	SCFD1 (ENSPMJG00000016620)	G2E3 (ENSPMJG00000016619)
Passeriformes_d	ANCESTRAL SPECIES	5	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940.p #21	ENSGT00390000001332 #22	ENSGT00940000167277	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Passeriformes_g	ANCESTRAL SPECIES		ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940.p #21	ENSGT00390000001332 #22	ENSGT00940000167277	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Passeroidea	ANCESTRAL SPECIES	1	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940.p #21	ENSGT00390000001332 #22	ENSGT00940000167277	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Common canary	MODERN SPECIES	3	NKX2-1 (ENSSCAG00000010416)	MBIP (ENSSCAG00000010424)	BRMS1L (ENSSCAG00000010429)	RALGAPA1 (ENSSCAG00000010435)	ENSSCAG00000010447	PSMA6 (ENSSCAG00000010454) #9	PRORP (ENSSCAG00000010457) #11	PPP2R3C (ENSSCAG00000010463) #12	FAM177A1 (ENSSCAG00000010470) #13	SRP54 (ENSSCAG00000010479) #14	ENSSCAG00000010491	BAZ1A (ENSSCAG00000010530) #16	CFL2 (ENSSCAG00000010641) #18	ENSSCAG00000010645 #21	ENSSCAG00000010652 #21	EAPP (ENSSCAG00000010655) #22	ENSSCAG00000010660	EGLN3 (ENSSCAG00000010695) #28	ENSSCAG00000010705 #29	NPAS3 (ENSSCAG00000010750) #30	AKAP6 (ENSSCAG00000010790) #32	ARHGAP5 (ENSSCAG00000010952) #33	NUBPL (ENSSCAG00000010959) #34	DTD2 (ENSSCAG00000010966)	HEATR5A (ENSSCAG00000010970)	HECTD1 (ENSSCAG00000011001)	AP4S1 (ENSSCAG00000011172)	STRN3 (ENSSCAG00000011190)	COCH (ENSSCAG00000011326)	SCFD1 (ENSSCAG00000011356)	G2E3 (ENSSCAG00000011391)
Zebra finch	MODERN SPECIES	27	NKX2-1 (ENSTGUG00000012009)	MBIP (ENSTGUG00000012006)	BRMS1L (ENSTGUG00000012002)	RALGAPA1 (ENSTGUG00000011986)	INSM2 (ENSTGUG00000020314) #7	ENSTGUG00000011983	PSMA6 (ENSTGUG00000011976) #9	PRORP (ENSTGUG00000011968) #11	PPP2R3C (ENSTGUG00000011965) #12	FAM177A1 (ENSTGUG00000023877) #13	SRP54 (ENSTGUG00000011945) #14	ENSTGUG00000011942	BAZ1A (ENSTGUG00000011934) #16	CFL2 (ENSTGUG00000011931) #18	SNX6 (ENSTGUG00000011923) #21	EAPP (ENSTGUG00000024220) #22	EGLN3 (ENSTGUG00000029575) #28	ENSTGUG00000027432 #29	NPAS3 (ENSTGUG00000011912) #30	AKAP6 (ENSTGUG00000011906) #32	ARHGAP5 (ENSTGUG00000011900) #33	NUBPL (ENSTGUG00000011890) #34	DTD2 (ENSTGUG00000011886)	HEATR5A (ENSTGUG00000011873)	HECTD1 (ENSTGUG00000011864)	AP4S1 (ENSTGUG00000011859)	STRN3 (ENSTGUG00000011841)	COCH (ENSTGUG00000011834)	SCFD1 (ENSTGUG00000011823)	G2E3 (ENSTGUG00000011816)	PRKD1 (ENSTGUG00000011808)
Medium ground finch	MODERN SPECIES	4	PAX9 (ENSGFOG00000003595)	NKX2-1 (ENSGFOG00000003614)	MBIP (ENSGFOG00000003621)	BRMS1L (ENSGFOG00000003639)	RALGAPA1 (ENSGFOG00000003659)	ENSGFOG00000003736	PSMA6 (ENSGFOG00000003747) #9	PRORP (ENSGFOG00000003765) #11	PPP2R3C (ENSGFOG00000003781) #12	FAM177A1 (ENSGFOG00000002462) #13	SRP54 (ENSGFOG00000002596) #14	ENSGFOG00000002765	BAZ1A (ENSGFOG00000002793) #16	CFL2 (ENSGFOG00000002878) #18	SNX6 (ENSGFOG00000002910) #21	EAPP (ENSGFOG00000002927) #22	EGLN3 (ENSGFOG00000002947) #28	NPAS3 (ENSGFOG00000003313) #30	AKAP6 (ENSGFOG00000003343) #32	ARHGAP5 (ENSGFOG00000003373) #33	NUBPL (ENSGFOG00000003402) #34	DTD2 (ENSGFOG00000003419)	HEATR5A (ENSGFOG00000003447)	HECTD1 (ENSGFOG00000003495)	AP4S1 (ENSGFOG00000003601)	STRN3 (ENSGFOG00000003655)	COCH (ENSGFOG00000003866)	SCFD1 (ENSGFOG00000003995)	G2E3 (ENSGFOG00000004680)	PRKD1 (ENSGFOG00000004710)	ENSGFOG00000004765
Flycatcher	MODERN SPECIES	24	PAX9 (ENSFALG00000006155)	NKX2-1 (ENSFALG00000006148)	MBIP (ENSFALG00000006136)	BRMS1L (ENSFALG00000006120)	RALGAPA1 (ENSFALG00000006075)	ENSFALG00000006032	PSMA6 (ENSFALG00000006020) #9	PRORP (ENSFALG00000006013) #11	PPP2R3C (ENSFALG00000006010) #12	FAM177A1 (ENSFALG00000024874) #13	SRP54 (ENSFALG00000005995) #14	ENSFALG00000005984	BAZ1A (ENSFALG00000005979) #16	CFL2 (ENSFALG00000024812) #18	SNX6 (ENSFALG00000005957) #21	EAPP (ENSFALG00000028368) #22	EGLN3 (ENSFALG00000026324) #28	NPAS3 (ENSFALG00000005925) #30	AKAP6 (ENSFALG00000005900) #32	ARHGAP5 (ENSFALG00000005883) #33	ENSFALG00000025541	NUBPL (ENSFALG00000027668) #34	DTD2 (ENSFALG00000028414)	ENSFALG00000027956	HECTD1 (ENSFALG00000005851)	AP4S1 (ENSFALG00000023839)	STRN3 (ENSFALG00000005833)	COCH (ENSFALG00000005818)	G2E3 (ENSFALG00000005783)	PRKD1 (ENSFALG00000005728)	FOXG1 (ENSFALG00000005708)
Neognathae_c	ANCESTRAL SPECIES	6	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a	ENSGT00950000183024.a.b.a
Kakapo	MODERN SPECIES	21	NKX2-1 (ENSSHBG00005002766)	MBIP (ENSSHBG00005002779)	BRMS1L (ENSSHBG00005002804)	RALGAPA1 (ENSSHBG00005003054)	INSM2 (ENSSHBG00005003423) #7	ENSSHBG00005003430	PSMA6 (ENSSHBG00005003440) #9	PRORP (ENSSHBG00005003453) #11	PPP2R3C (ENSSHBG00005003472) #12	FAM177A1 (ENSSHBG00005003507) #13	SRP54 (ENSSHBG00005003516) #14	ENSSHBG00005003529	BAZ1A (ENSSHBG00005003560) #16	CFL2 (ENSSHBG00005003606) #18	SNX6 (ENSSHBG00005003622) #21	EAPP (ENSSHBG00005003642) #22	SPTSSA (ENSSHBG00005003649) #26	EGLN3 (ENSSHBG00005003658) #28	NPAS3 (ENSSHBG00005003672) #30	AKAP6 (ENSSHBG00005003692) #32	ARHGAP5 (ENSSHBG00005003726) #33	NUBPL (ENSSHBG00005003744) #34	DTD2 (ENSSHBG00005003767)	HEATR5A (ENSSHBG00005004034)	HECTD1 (ENSSHBG00005004649)	AP4S1 (ENSSHBG00005004700)	STRN3 (ENSSHBG00005004714)	COCH (ENSSHBG00005004736)	SCFD1 (ENSSHBG00005000517)	G2E3 (ENSSHBG00005000523)	PRKD1 (ENSSHBG00005010583)
Golden eagle	MODERN SPECIES	11	NKX2-8 (ENSACCG00020003335)	NKX2-1 (ENSACCG00020003352)	MBIP (ENSACCG00020003368)	BRMS1L (ENSACCG00020003386)	RALGAPA1 (ENSACCG00020003463)	ENSACCG00020003607	PSMA6 (ENSACCG00020003622) #9	PRORP (ENSACCG00020003638) #11	PPP2R3C (ENSACCG00020003689) #12	FAM177A1 (ENSACCG00020003708) #13	SRP54 (ENSACCG00020000288) #14	ENSACCG00020000294	BAZ1A (ENSACCG00020000305) #16	CFL2 (ENSACCG00020000332) #18	SNX6 (ENSACCG00020000377) #21	EAPP (ENSACCG00020000384) #22	SPTSSA (ENSACCG00020000395) #26	EGLN3 (ENSACCG00020000405) #28	NPAS3 (ENSACCG00020000519) #30	AKAP6 (ENSACCG00020000582) #32	ARHGAP5 (ENSACCG00020000601) #33	NUBPL (ENSACCG00020000650) #34	DTD2 (ENSACCG00020000678)	HEATR5A (ENSACCG00020000762)	HECTD1 (ENSACCG00020000924)	AP4S1 (ENSACCG00020001142)	STRN3 (ENSACCG00020001183)	COCH (ENSACCG00020001226)	SCFD1 (ENSACCG00020001288)	PRKD1 (ENSACCG00020001378)	FOXG1 (ENSACCG00020001418)
Galloanserae	ANCESTRAL SPECIES	4	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00960000192415	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Phasianidae	ANCESTRAL SPECIES	4	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00960000192415	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Japanese quail	MODERN SPECIES	23	NKX2-8 (ENSCJPG00005019076)	NKX2-1 (ENSCJPG00005019074)	MBIP (ENSCJPG00005019069)	BRMS1L (ENSCJPG00005019065)	RALGAPA1 (ENSCJPG00005017708)	ENSCJPG00005017706	PSMA6 (ENSCJPG00005017705) #9	PRORP (ENSCJPG00005017704) #11	PPP2R3C (ENSCJPG00005017703) #12	FAM177A1 (ENSCJPG00005017702) #13	SRP54 (ENSCJPG00005017701) #14	ENSCJPG00005017700	BAZ1A (ENSCJPG00005017586) #16	CFL2 (ENSCJPG00005017583) #18	SNX6 (ENSCJPG00005017581) #21	EAPP (ENSCJPG00005017580) #22	SPTSSA (ENSCJPG00005017579) #26	EGLN3 (ENSCJPG00005017575) #28	NPAS3 (ENSCJPG00005017573) #30	FOXG1 (ENSCJPG00005017565)	PRKD1 (ENSCJPG00005017560)	G2E3 (ENSCJPG00005017559)	SCFD1 (ENSCJPG00005017558)	COCH (ENSCJPG00005017557)	STRN3 (ENSCJPG00005017556)	AP4S1 (ENSCJPG00005017555)	HECTD1 (ENSCJPG00005017554)	HEATR5A (ENSCJPG00005017553)	DTD2 (ENSCJPG00005017552)	NUBPL (ENSCJPG00005017551) #34	ARHGAP5 (ENSCJPG00005017550) #33
Phasianidae_b	ANCESTRAL SPECIES	3	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00960000192415	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Chicken	MODERN SPECIES	34	NKX2-1 (ENSGALG00010004654)	MBIP (ENSGALG00010004623)	BRMS1L (ENSGALG00010005909)	RALGAPA1 (ENSGALG00010006052)	INSM2 (ENSGALG00010006860) #7	NFKBIA (ENSGALG00010005913)	PSMA6 (ENSGALG00010006804) #9	PRORP (ENSGALG00010007337) #11	PPP2R3C (ENSGALG00010006761) #12	FAM177A1 (ENSGALG00010006748) #13	SRP54 (ENSGALG00010006720) #14	ENSGALG00010006685	BAZ1A (ENSGALG00010006673) #16	CFL2 (ENSGALG00010006653) #18	SNX32 (ENSGALG00010005890) #21	EAPP (ENSGALG00010005902) #22	SPTSSA (ENSGALG00010005900) #26	EGLN3 (ENSGALG00010005871) #28	ENSGALG00010005864	NPAS3 (ENSGALG00010005829) #30	AKAP6 (ENSGALG00010005763) #32	ARHGAP5 (ENSGALG00010005714) #33	NUBPL (ENSGALG00010005696) #34	DTD2 (ENSGALG00010005617)	HEATR5A (ENSGALG00010005578)	HECTD1 (ENSGALG00010005562)	AP4S1 (ENSGALG00010005535)	STRN3 (ENSGALG00010005526)	COCH (ENSGALG00010005509)	SCFD1 (ENSGALG00010005502)	G2E3 (ENSGALG00010005489)
Turkey	MODERN SPECIES	25	MIPOL1 (ENSMGAG00000012539)	SLC25A21 (ENSMGAG00000012532)	NKX2-8 (ENSMGAG00000012528)	MBIP (ENSMGAG00000012523)	BRMS1L (ENSMGAG00000012520)	RALGAPA1 (ENSMGAG00000012509)	ENSMGAG00000012505	PSMA6 (ENSMGAG00000012499) #9	PRORP (ENSMGAG00000012497) #11	PPP2R3C (ENSMGAG00000012492) #12	SRP54 (ENSMGAG00000012481) #14	ENSMGAG00000012478	BAZ1A (ENSMGAG00000012463) #16	CFL2 (ENSMGAG00000012456) #18	SNX6 (ENSMGAG00000017417) #21	EAPP (ENSMGAG00000012459) #22	EGLN3 (ENSMGAG00000012453) #28	NPAS3 (ENSMGAG00000012451) #30	ENSMGAG00000016559	AKAP6 (ENSMGAG00000017059) #32	ARHGAP5 (ENSMGAG00000012438) #33	NUBPL (ENSMGAG00000019955) #34	ENSMGAG00000017755	DTD2 (ENSMGAG00000012433)	HEATR5A (ENSMGAG00000012421)	HECTD1 (ENSMGAG00000012408)	AP4S1 (ENSMGAG00000012406)	STRN3 (ENSMGAG00000012362)	COCH (ENSMGAG00000012391)	SCFD1 (ENSMGAG00000012377)	G2E3 (ENSMGAG00000012370)
Anatidae	ANCESTRAL SPECIES	26	ENSGT00390000007087	ENSGT00940000157760	ENSGT00440000033504.A	ENSGT00940000160155	ENSGT00550000074828.a	ENSGT00940000161780	ENSGT00940000161196	ENSGT00940000160931	ENSGT00940000161427	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a	ENSGT00950000183024.a.b.a
Pink-footed goose	MODERN SPECIES	31	POLR2L (ENSABRG00000014187)	CD151 (ENSABRG00000014181)	ENSABRG00000014155	PNPLA2 (ENSABRG00000014141)	RPLP2 (ENSABRG00000014125)	PIDD1 (ENSABRG00000014118)	SLC25A22 (ENSABRG00000014053)	IRF7 (ENSABRG00000014045)	ENSABRG00000014036	ENSABRG00000014030	RASSF7 (ENSABRG00000014022)	LRRC56 (ENSABRG00000014013)	HRAS (ENSABRG00000014008)	CFL2 (ENSABRG00000013987) #18	SNX6 (ENSABRG00000013972) #21	EAPP (ENSABRG00000013967) #22	SPTSSA (ENSABRG00000013952) #26	EGLN3 (ENSABRG00000013942) #28	NPAS3 (ENSABRG00000013913) #30	AKAP6 (ENSABRG00000013882) #32	ARHGAP5 (ENSABRG00000013863) #33	NUBPL (ENSABRG00000013842) #34	DTD2 (ENSABRG00000013834)	HEATR5A (ENSABRG00000013782)	HECTD1 (ENSABRG00000013176)	AP4S1 (ENSABRG00000013147)	STRN3 (ENSABRG00000012535)	COCH (ENSABRG00000012468)	SCFD1 (ENSABRG00000012162)	G2E3 (ENSABRG00000012051)	PRKD1 (ENSABRG00000011989)
Duck	MODERN SPECIES	23	TSPAN4 (ENSAPLG00000003602)	POLR2L (ENSAPLG00000023236)	CD151 (ENSAPLG00000013662)	ENSAPLG00000013528	ENSAPLG00000019646	PNPLA2 (ENSAPLG00000013222)	RPLP2 (ENSAPLG00000013085)	PIDD1 (ENSAPLG00000012991)	SLC25A22 (ENSAPLG00000012816)	IRF7 (ENSAPLG00000012752)	ENSAPLG00000025316	ENSAPLG00000012427	HRAS (ENSAPLG00000012248)	CFL2 (ENSAPLG00000025574) #18	SNX6 (ENSAPLG00000011961) #21	EAPP (ENSAPLG00000021600) #22	EGLN3 (ENSAPLG00000020625) #28	NPAS3 (ENSAPLG00000015085) #30	AKAP6 (ENSAPLG00000015214) #32	ARHGAP5 (ENSAPLG00000015365) #33	NUBPL (ENSAPLG00000015416) #34	DTD2 (ENSAPLG00000003883)	HEATR5A (ENSAPLG00000003094)	HECTD1 (ENSAPLG00000002424)	AP4S1 (ENSAPLG00000001781)	STRN3 (ENSAPLG00000016038)	COCH (ENSAPLG00000015813)	SCFD1 (ENSAPLG00000015536)	G2E3 (ENSAPLG00000015236)	PRKD1 (ENSAPLG00000014715)	FOXG1 (ENSAPLG00000027732)
African ostrich	MODERN SPECIES	438	ENSSCUG00000010336	RBM41 (ENSSCUG00000010334)	MORC4 (ENSSCUG00000010329)	CLDN2 (ENSSCUG00000010326)	RIPPLY1 (ENSSCUG00000010325)	PRRG3 (ENSSCUG00000010324)	ENSSCUG00000010322	CNGA2 (ENSSCUG00000010321)	GABRE (ENSSCUG00000010314)	GABRA3 (ENSSCUG00000010312)	ENSSCUG00000010311	SOX3 (ENSSCUG00000010308)	BAZ1A (ENSSCUG00000010301) #16	CFL2 (ENSSCUG00000010299) #18	SNX6 (ENSSCUG00000010298) #21	EAPP (ENSSCUG00000010297) #22	EGLN3 (ENSSCUG00000010295) #28	ENSSCUG00000010294	NPAS3 (ENSSCUG00000010293) #30	AKAP6 (ENSSCUG00000010292) #32	ARHGAP5 (ENSSCUG00000010290) #33	NUBPL (ENSSCUG00000010286) #34	HEATR5A (ENSSCUG00000010240)	HECTD1 (ENSSCUG00000010193)	AP4S1 (ENSSCUG00000010186)	STRN3 (ENSSCUG00000010158)	COCH (ENSSCUG00000010148)	SCFD1 (ENSSCUG00000010147)	G2E3 (ENSSCUG00000010146)	PRKD1 (ENSSCUG00000010145)	FOXG1 (ENSSCUG00000010141)
Australian saltwater crocodile	MODERN SPECIES	64	SLC25A21 (ENSCPRG00005003789)	PAX9 (ENSCPRG00005003781)	NKX2-1 (ENSCPRG00005003775)	MBIP (ENSCPRG00005003762)	BRMS1L (ENSCPRG00005003727)	RALGAPA1 (ENSCPRG00005003702)	ENSCPRG00005003675	PSMA6 (ENSCPRG00005003666) #9	PPP2R3C (ENSCPRG00005003642) #12	FAM177A1 (ENSCPRG00005003635) #13	SRP54 (ENSCPRG00005003625) #14	ENSCPRG00005003622	BAZ1A (ENSCPRG00005003577) #16	CFL2 (ENSCPRG00005003558) #18	SNX6 (ENSCPRG00005003417) #21	EAPP (ENSCPRG00005003401) #22	SPTSSA (ENSCPRG00005003398) #26	EGLN3 (ENSCPRG00005003375) #28	ENSCPRG00005003366	NPAS3 (ENSCPRG00005003280) #30	AKAP6 (ENSCPRG00005003219) #32	ARHGAP5 (ENSCPRG00005003188) #33	NUBPL (ENSCPRG00005003181) #34	DTD2 (ENSCPRG00005003165)	HEATR5A (ENSCPRG00005002056)	HECTD1 (ENSCPRG00005001329)	AP4S1 (ENSCPRG00005001250)	STRN3 (ENSCPRG00005000658)	COCH (ENSCPRG00005000540)	SCFD1 (ENSCPRG00005000469)	PRKD1 (ENSCPRG00005000356)
Cryptodira	ANCESTRAL SPECIES	3	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00940000166226	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Emydidae	ANCESTRAL SPECIES	2	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT01020000230798 #29	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Three-toed box turtle	MODERN SPECIES	40	NKX2-1 (ENSTMTG00000010756)	MBIP (ENSTMTG00000010736)	BRMS1L (ENSTMTG00000010693)	RALGAPA1 (ENSTMTG00000010494)	INSM2 (ENSTMTG00000010472) #7	ENSTMTG00000010447	PSMA6 (ENSTMTG00000010430) #9	PRORP (ENSTMTG00000010405) #11	PPP2R3C (ENSTMTG00000010366) #12	FAM177A1 (ENSTMTG00000010346) #13	SRP54 (ENSTMTG00000010325) #14	ENSTMTG00000010311	BAZ1A (ENSTMTG00000010196) #16	CFL2 (ENSTMTG00000010187) #18	SNX6 (ENSTMTG00000010145) #21	EAPP (ENSTMTG00000010091) #22	SPTSSA (ENSTMTG00000010079) #26	EGLN3 (ENSTMTG00000010061) #28	ENSTMTG00000010048 #29	NPAS3 (ENSTMTG00000009693) #30	AKAP6 (ENSTMTG00000009566) #32	ARHGAP5 (ENSTMTG00000009538) #33	NUBPL (ENSTMTG00000009520) #34	DTD2 (ENSTMTG00000009510)	HEATR5A (ENSTMTG00000009443)	HECTD1 (ENSTMTG00000009351)	AP4S1 (ENSTMTG00000009331)	STRN3 (ENSTMTG00000009240)	ENSTMTG00000009208	ENSTMTG00000009193	SCFD1 (ENSTMTG00000009144)
painted turtle	MODERN SPECIES	13	GEMIN2 (ENSCPBG00000026207)	SEC23A (ENSCPBG00000026206)	CLEC14A (ENSCPBG00000026203)	SSTR1 (ENSCPBG00000026202)	TTC6 (ENSCPBG00000026201)	FOXA1 (ENSCPBG00000026200)	PSMA6 (ENSCPBG00000026199) #9	PRORP (ENSCPBG00000026198) #11	PPP2R3C (ENSCPBG00000026197) #12	FAM177A1 (ENSCPBG00000026196) #13	SRP54 (ENSCPBG00000026195) #14	ENSCPBG00000026194	BAZ1A (ENSCPBG00000026193) #16	CFL2 (ENSCPBG00000026192) #18	SNX6 (ENSCPBG00000026191) #21	EAPP (ENSCPBG00000026190) #22	SPTSSA (ENSCPBG00000026189) #26	ENSCPBG00000026187	ENSCPBG00000026186 #29	ENSCPBG00000026185 #30	ENSCPBG00000026183 #30	AKAP6 (ENSCPBG00000026181) #32	ARHGAP5 (ENSCPBG00000026180) #33	NUBPL (ENSCPBG00000026179) #34	DTD2 (ENSCPBG00000026177)	HEATR5A (ENSCPBG00000026015)	HECTD1 (ENSCPBG00000025954)	AP4S1 (ENSCPBG00000025936)	STRN3 (ENSCPBG00000025355)	COCH (ENSCPBG00000025281)	SCFD1 (ENSCPBG00000025264)
Testudinidae	ANCESTRAL SPECIES	2	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201.i #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a	ENSGT00950000183024.a.b.a
Abingdon island giant tortoise	MODERN SPECIES	2041																EAPP (ENSCABG00000020590) #22	SPTSSA (ENSCABG00000020591) #26	EGLN3 (ENSCABG00000020593) #28	NPAS3 (ENSCABG00000020599) #30	AKAP6 (ENSCABG00000020663) #32	ENSCABG00000020665
Goode s thornscrub tortoise	MODERN SPECIES	18	NKX2-8 (ENSGEVG00005003320)	NKX2-1 (ENSGEVG00005003330)	MBIP (ENSGEVG00005003348)	BRMS1L (ENSGEVG00005003373)	RALGAPA1 (ENSGEVG00005003399)	ENSGEVG00005003452	PSMA6 (ENSGEVG00005003462) #9	PRORP (ENSGEVG00005003474) #11	PPP2R3C (ENSGEVG00005003486) #12	FAM177A1 (ENSGEVG00005003513) #13	SRP54 (ENSGEVG00005003538) #14	ENSGEVG00005003559	BAZ1A (ENSGEVG00005003590) #16	CFL2 (ENSGEVG00005003634) #18	SNX6 (ENSGEVG00005003670) #21	EAPP (ENSGEVG00005003705) #22	SPTSSA (ENSGEVG00005003714) #26	EGLN3 (ENSGEVG00005003725) #28	NPAS3 (ENSGEVG00005003782) #30	AKAP6 (ENSGEVG00005003920) #32	ENSGEVG00005003955	ARHGAP5 (ENSGEVG00005000079) #33	NUBPL (ENSGEVG00005000120) #34	DTD2 (ENSGEVG00005000160)	HEATR5A (ENSGEVG00005001307)	AP4S1 (ENSGEVG00005002860)	STRN3 (ENSGEVG00005002888)	ENSGEVG00005002940	ENSGEVG00005002963	SCFD1 (ENSGEVG00005003003)	ENSGEVG00005003087
Chinese turtle	MODERN SPECIES	666	NKX2-1 (ENSPSIG00000010273)	MBIP (ENSPSIG00000009993)	ENSPSIG00000000368	BRMS1L (ENSPSIG00000009452)	ENSPSIG00000009399	PSMA6 (ENSPSIG00000008904) #9	PRORP (ENSPSIG00000008820) #11	PPP2R3C (ENSPSIG00000007705) #12	FAM177A1 (ENSPSIG00000007459) #13	SRP54 (ENSPSIG00000006476) #14	ENSPSIG00000018036	BAZ1A (ENSPSIG00000017675) #16	CFL2 (ENSPSIG00000017595) #18	ENSPSIG00000000362	SNX6 (ENSPSIG00000017358) #21	EAPP (ENSPSIG00000017258) #22	SPTSSA (ENSPSIG00000017252) #26	EGLN3 (ENSPSIG00000017197) #28	NPAS3 (ENSPSIG00000017064) #30	ENSPSIG00000017052	AKAP6 (ENSPSIG00000016513) #32	ARHGAP5 (ENSPSIG00000016183) #33	ENSPSIG00000016061
Lepidosauria	ANCESTRAL SPECIES	24	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Episquamata	ANCESTRAL SPECIES		ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT01100000263530.a	ENSGT01100000263530.b	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386
Laterata	ANCESTRAL SPECIES	2	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT01100000263530.a	ENSGT01100000263530.b	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a	ENSGT00940000159386	ENSGT00550000074845
Common wall lizard	MODERN SPECIES		BRMS1L (ENSPMRG00000008992)	RALGAPA1 (ENSPMRG00000009034)	INSM2 (ENSPMRG00000009128) #7	ENSPMRG00000009136	ENSPMRG00000009142	ENSPMRG00000009146	ENSPMRG00000009151	ENSPMRG00000009160 #9	PRORP (ENSPMRG00000009184) #11	PPP2R3C (ENSPMRG00000009211) #12	SRP54 (ENSPMRG00000009275) #14	ENSPMRG00000009338	BAZ1A (ENSPMRG00000009387) #16	CFL2 (ENSPMRG00000009760) #18	SNX6 (ENSPMRG00000003888) #21	EAPP (ENSPMRG00000004150) #22	SPTSSA (ENSPMRG00000004164) #26	EGLN3 (ENSPMRG00000004171) #28	ENSPMRG00000004181	NPAS3 (ENSPMRG00000004200) #30	ENSPMRG00000004269	ENSPMRG00000004271	ENSPMRG00000004277	ENSPMRG00000004283	AKAP6 (ENSPMRG00000004291) #32	ENSPMRG00000004319 #33	ENSPMRG00000004327 #33	NUBPL (ENSPMRG00000004333) #34	DTD2 (ENSPMRG00000004359)	HEATR5A (ENSPMRG00000004459)	HECTD1 (ENSPMRG00000005579)
Argentine black and white tegu	MODERN SPECIES	14	COCH (ENSSMRG00000014678)	STRN3 (ENSSMRG00000014675)	AP4S1 (ENSSMRG00000014674)	HECTD1 (ENSSMRG00000012971)	HEATR5A (ENSSMRG00000012967)	ENSSMRG00000012966	NUBPL (ENSSMRG00000012965) #34	ARHGAP5 (ENSSMRG00000012963) #33	AKAP6 (ENSSMRG00000012959) #32	ENSSMRG00000012958	NPAS3 (ENSSMRG00000012956) #30	EGLN3 (ENSSMRG00000012949) #28	SPTSSA (ENSSMRG00000012947) #26	CFL2 (ENSSMRG00000012946) #18	SNX6 (ENSSMRG00000012944) #21	EAPP (ENSSMRG00000012943) #22	BAZ1A (ENSSMRG00000012801) #16	ENSSMRG00000012800	SRP54 (ENSSMRG00000012796) #14	FAM177A1 (ENSSMRG00000012795) #13	PPP2R3C (ENSSMRG00000012786) #12	PRORP (ENSSMRG00000012784) #11	PSMA6 (ENSSMRG00000012783) #9	ENSSMRG00000012781	RALGAPA1 (ENSSMRG00000012770)	EEFSEC (ENSSMRG00000012767)	BRMS1L (ENSSMRG00000012764)	ENSSMRG00000012760	MBIP (ENSSMRG00000012759)	NKX2-1 (ENSSMRG00000012757)	ENSSMRG00000012756
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824 #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT01100000263530.a	ENSGT01100000263530.b	ENSGT01100000263481	ENSGT00940000162286.a.a	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT00940000153431.a	ENSGT00390000006205.b	ENSGT00940000156572	ENSGT00970000193421.B
Elapidae	ANCESTRAL SPECIES	3	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824.c #14	ENSGT00550000074824.d #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT00940000153431.a	ENSGT00390000006205.b.m	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a.g	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Indian cobra	MODERN SPECIES		PAX9 (ENSNNAG00000008668)	NKX2-1 (ENSNNAG00000008530)	MBIP (ENSNNAG00000008486)	BRMS1L (ENSNNAG00000008437)	RALGAPA1 (ENSNNAG00000007897)	INSM2 (ENSNNAG00000007853) #7	ENSNNAG00000007821	PSMA6 (ENSNNAG00000007786) #9	PRORP (ENSNNAG00000007723) #11	PPP2R3C (ENSNNAG00000007681) #12	SRP54 (ENSNNAG00000007461) #14	ENSNNAG00000007422	BAZ1A (ENSNNAG00000007312) #16	CFL2 (ENSNNAG00000007288) #18	SNX6 (ENSNNAG00000007261) #21	EAPP (ENSNNAG00000007231) #22	SPTSSA (ENSNNAG00000007223) #26	ENSNNAG00000007211	NPAS3 (ENSNNAG00000006932) #30	AKAP6 (ENSNNAG00000006787) #32	ARHGAP5 (ENSNNAG00000006737) #33	NUBPL (ENSNNAG00000006706) #34	DTD2 (ENSNNAG00000013978)	HEATR5A (ENSNNAG00000013880)	HECTD1 (ENSNNAG00000013803)	AP4S1 (ENSNNAG00000013772)	ENSNNAG00000012651	ENSNNAG00000012061	COCH (ENSNNAG00000011926)	SCFD1 (ENSNNAG00000010584)	G2E3 (ENSNNAG00000010420)
Elapidae_a	ANCESTRAL SPECIES	4	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824.c #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT00940000153431.a	ENSGT00390000006205.b.m	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a.g	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Acanthophiinae	ANCESTRAL SPECIES	6	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000158921	ENSGT00950000183139.B	ENSGT00940000162391 #7	ENSGT00940000163080	ENSGT00550000074807.d #9	ENSGT00390000002201 #11	ENSGT00940000155583 #12	ENSGT00390000016736.a #13	ENSGT00550000074824.c #14	ENSGT00390000012799	ENSGT00940000158135 #16	ENSGT00950000183000.c.b #18	ENSGT00940000154940 #21	ENSGT00390000001332 #22	ENSGT00390000002766.b.b #26	ENSGT00940000158745 #28	ENSGT00940000158051 #30	ENSGT00810000125473.B #32	ENSGT00940000154553.a.b #33	ENSGT00950000183193.B #34	ENSGT00940000170035	ENSGT00940000153431.a	ENSGT00390000006205.b.m	ENSGT00940000156572	ENSGT00970000193421.B	ENSGT00950000183095.a.a.g	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a
Eastern brown snake	MODERN SPECIES	1	NKX2-1 (ENSPTXG00000015939)	MBIP (ENSPTXG00000015934)	BRMS1L (ENSPTXG00000015929)	RALGAPA1 (ENSPTXG00000003376)	INSM2 (ENSPTXG00000003225) #7	ENSPTXG00000003223	PSMA6 (ENSPTXG00000003220) #9	PRORP (ENSPTXG00000003219) #11	PPP2R3C (ENSPTXG00000003174) #12	FAM177A1 (ENSPTXG00000003169) #13	SRP54 (ENSPTXG00000003166) #14	ENSPTXG00000003164	BAZ1A (ENSPTXG00000003134) #16	CFL2 (ENSPTXG00000003130) #18	SNX6 (ENSPTXG00000003129) #21	EAPP (ENSPTXG00000003127) #22	SPTSSA (ENSPTXG00000003126) #26	EGLN3 (ENSPTXG00000003125) #28	NPAS3 (ENSPTXG00000003122) #30	AKAP6 (ENSPTXG00000003121) #32	ARHGAP5 (ENSPTXG00000003120) #33	NUBPL (ENSPTXG00000003118) #34	ENSPTXG00000003117	DTD2 (ENSPTXG00000003115)	HEATR5A (ENSPTXG00000003041)	HECTD1 (ENSPTXG00000003020)	AP4S1 (ENSPTXG00000003015)	STRN3 (ENSPTXG00000003009)	COCH (ENSPTXG00000003006)	SCFD1 (ENSPTXG00000003002)	G2E3 (ENSPTXG00000002827)
Mainland tiger snake	MODERN SPECIES	8	NKX2-1 (ENSNSUG00000003422)	MBIP (ENSNSUG00000003426)	BRMS1L (ENSNSUG00000003433)	RALGAPA1 (ENSNSUG00000003444)	INSM2 (ENSNSUG00000003553) #7	ENSNSUG00000003555	PSMA6 (ENSNSUG00000003565) #9	PRORP (ENSNSUG00000003576) #11	PPP2R3C (ENSNSUG00000003583) #12	FAM177A1 (ENSNSUG00000003650) #13	ENSNSUG00000003651 #14	ENSNSUG00000003653	BAZ1A (ENSNSUG00000003669) #16	CFL2 (ENSNSUG00000003720) #18	SNX6 (ENSNSUG00000003722) #21	EAPP (ENSNSUG00000003724) #22	SPTSSA (ENSNSUG00000003726) #26	EGLN3 (ENSNSUG00000003728) #28	NPAS3 (ENSNSUG00000003732) #30	AKAP6 (ENSNSUG00000003783) #32	ARHGAP5 (ENSNSUG00000003836) #33	NUBPL (ENSNSUG00000003840) #34	ENSNSUG00000003841	DTD2 (ENSNSUG00000003844)	HEATR5A (ENSNSUG00000003845)	HECTD1 (ENSNSUG00000003900)	AP4S1 (ENSNSUG00000004769)	ENSNSUG00000004774	ENSNSUG00000004776	COCH (ENSNSUG00000004777)	SCFD1 (ENSNSUG00000004783)
Blue-lipped sea krait	MODERN SPECIES	8712																EAPP (ENSLLTG00000004293) #22
Lizard	MODERN SPECIES	1	ENSACAG00000041498	KDM4C (ENSACAG00000004592)	PTPRD (ENSACAG00000004644)	ENSACAG00000040460	ENSACAG00000037270	ENSACAG00000001848	PRORP (ENSACAG00000001929) #11	PPP2R3C (ENSACAG00000002011) #12	FAM177A1 (ENSACAG00000024339) #13	ENSACAG00000002103 #14	ENSACAG00000002294	BAZ1A (ENSACAG00000002328) #16	ENSACAG00000035722	CFL2 (ENSACAG00000002385) #18	SNX6 (ENSACAG00000002409) #21	EAPP (ENSACAG00000040323) #22	SPTSSA (ENSACAG00000044505) #26	EGLN3 (ENSACAG00000040138) #28	NPAS3 (ENSACAG00000002620) #30	ENSACAG00000036757	AKAP6 (ENSACAG00000002643) #32	ENSACAG00000044565	ARHGAP5 (ENSACAG00000002726) #33	ENSACAG00000029681	NUBPL (ENSACAG00000015286) #34	DTD2 (ENSACAG00000015281)	HEATR5A (ENSACAG00000015177)	HECTD1 (ENSACAG00000015118)	AP4S1 (ENSACAG00000015092)	STRN3 (ENSACAG00000014886)	ENSACAG00000034657
tuatara	DUPLICATION
tuatara	MODERN SPECIES	1090			BRMS1L (ENSSPUG00000012305)	RALGAPA1 (ENSSPUG00000012506)	ENSSPUG00000013022	ENSSPUG00000013027	PSMA6 (ENSSPUG00000013038) #9	PRORP (ENSSPUG00000013053) #11	PPP2R3C (ENSSPUG00000013069) #12	FAM177A1 (ENSSPUG00000013088) #13	SRP54 (ENSSPUG00000013101) #14	ENSSPUG00000013118	BAZ1A (ENSSPUG00000013228) #16	CFL2 (ENSSPUG00000013535) #18	SNX6 (ENSSPUG00000013552) #21	ENSSPUG00000013571 #22	ENSSPUG00000013578 #22	SPTSSA (ENSSPUG00000013585) #26	ENSSPUG00000013590 #28	ENSSPUG00000013593 #28	NPAS3 (ENSSPUG00000013629) #30
tuatara	MODERN SPECIES	1090		BRMS1L (ENSSPUG00000012305)	RALGAPA1 (ENSSPUG00000012506)	ENSSPUG00000013022	ENSSPUG00000013027	PSMA6 (ENSSPUG00000013038) #9	PRORP (ENSSPUG00000013053) #11	PPP2R3C (ENSSPUG00000013069) #12	FAM177A1 (ENSSPUG00000013088) #13	SRP54 (ENSSPUG00000013101) #14	ENSSPUG00000013118	BAZ1A (ENSSPUG00000013228) #16	CFL2 (ENSSPUG00000013535) #18	SNX6 (ENSSPUG00000013552) #21	ENSSPUG00000013571 #22	ENSSPUG00000013578 #22	SPTSSA (ENSSPUG00000013585) #26	ENSSPUG00000013590 #28	ENSSPUG00000013593 #28	NPAS3 (ENSSPUG00000013629) #30
Anura	ANCESTRAL SPECIES	231																ENSGT00390000001332 #22	ENSGT00940000162391 #7	ENSGT00950000183139.B	ENSGT00940000158921	ENSGT00510000047831	ENSGT00940000161107	ENSGT00940000161610	ENSGT00940000159896	ENSGT00730000111119	ENSGT00390000017800	ENSGT00940000161150	ENSGT00940000161442	ENSGT00940000156092
Frog	MODERN SPECIES	8	smoc1 (ENSXETG00000030085)	ENSXETG00000046063	srsf5 (ENSXETG00000002211)	churc1 (ENSXETG00000039130)	sptb (ENSXETG00000032471)	eif2ak4 (ENSXETG00000002204)	fntb (ENSXETG00000002203)	slc10a1 (ENSXETG00000031082)	rab15 (ENSXETG00000038460)	chst9l.1 (ENSXETG00000038414)	ENSXETG00000025857	chst9l.4 (ENSXETG00000040554)	itpka (ENSXETG00000002921)	znf106 (ENSXETG00000002920)	ENSXETG00000041771	eapp (ENSXETG00000002919) #22	INSM2 (ENSXETG00000039004) #7	ralgapa1 (ENSXETG00000025861)	brms1l (ENSXETG00000002912)	mbip (ENSXETG00000002911)	nkx2-1 (ENSXETG00000034580)	nkx2-8 (ENSXETG00000039398)	pax9 (ENSXETG00000002907)	slc25a21 (ENSXETG00000012316)	mipol1 (ENSXETG00000035327)	foxa1 (ENSXETG00000025867)	ttc6 (ENSXETG00000031053)	sstr1 (ENSXETG00000045347)	ENSXETG00000039166	capn3 (ENSXETG00000012304)	snx6 (ENSXETG00000012302) #21
Leishan spiny toad	MODERN SPECIES	4	IFT43 (ENSLLEG00000029165)	SNAP23 (ENSLLEG00000029135)	LRRC57 (ENSLLEG00000029111)	HAUS2 (ENSLLEG00000029053)	ENSLLEG00000028963	ENSLLEG00000028873	DNAL1 (ENSLLEG00000028794)	MIDEAS (ENSLLEG00000028739)	PTGR2 (ENSLLEG00000028577)	TMEM62 (ENSLLEG00000028514)	SRP54 (ENSLLEG00000028415) #14	ENSLLEG00000028362	BAZ1A (ENSLLEG00000028193) #16	CFL2 (ENSLLEG00000028145) #18	SNX6 (ENSLLEG00000028033) #21	EAPP (ENSLLEG00000027981) #22	INSM2 (ENSLLEG00000027899) #7	RALGAPA1 (ENSLLEG00000027614)	BRMS1L (ENSLLEG00000027170)	MBIP (ENSLLEG00000027047)	NKX2-1 (ENSLLEG00000026992)	NKX2-8 (ENSLLEG00000026970)	PAX9 (ENSLLEG00000026831)	ENSLLEG00000026780	ENSLLEG00000026140	SLC25A21 (ENSLLEG00000025873)	ENSLLEG00000025816	ENSLLEG00000025667	ENSLLEG00000025591	TTC6 (ENSLLEG00000024256)	SSTR1 (ENSLLEG00000024125)