Amniota	ANCESTRAL SPECIES	9	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00940000165098	ENSGT00390000008678 #32	ENSGT00950000182879.b	ENSGT00940000159251 #34	ENSGT00390000017123.a	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489	ENSGT00940000157721 #37	ENSGT00390000018245.d
Mammalia	ANCESTRAL SPECIES	5	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00950000182879.b	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027	ENSGT00940000158038
Theria	ANCESTRAL SPECIES	3	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00950000182879.b	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027	ENSGT00940000158038
Eutheria	ANCESTRAL SPECIES		ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027	ENSGT00940000158038
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Primates	ANCESTRAL SPECIES	4	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Haplorrhini	ANCESTRAL SPECIES	1	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Simiiformes	ANCESTRAL SPECIES	3	ENSGT00940000158755	ENSGT00940000154568.q.a.a.a	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Catarrhini	ANCESTRAL SPECIES	3	ENSGT00940000158755	ENSGT00940000154568.q.a.a.a	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568.q.a.a.a	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568.q.a.a.a	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000158755	ENSGT00940000154568.q.a.a.a	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00390000012628.a.a.d.d	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Macaca	ANCESTRAL SPECIES		ENSGT00940000158755	ENSGT00940000154568.q.a.a.a	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00390000012628.a.a.d.d	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000158755	ENSGT00940000154568.q.a.a.a	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000164709.a.b.b.a.a.b.a.a.a.a.b.a.a.a.b #21	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000007027	ENSGT00940000158038
Rhesus	MODERN SPECIES		RAVER2 (ENSMMUG00000018565) #7	ENSMMUG00000064480 #8	CACHD1 (ENSMMUG00000007577) #9	UBE2U (ENSMMUG00000012538) #10	ENSMMUG00000056799 #11	ROR1 (ENSMMUG00000004668) #12	ENSMMUG00000061816 #13	PGM1 (ENSMMUG00000020049) #14	ITGB3BP (ENSMMUG00000020047) #15	ALG6 (ENSMMUG00000020046) #16	FOXD3 (ENSMMUG00000022350) #17	ENSMMUG00000058152 #18	ATG4C (ENSMMUG00000000386) #19	ENSMMUG00000056324 #20	ENSMMUG00000050619 #21	DOCK7 (ENSMMUG00000002340) #22	ANGPTL3 (ENSMMUG00000046449) #23	USP1 (ENSMMUG00000002339) #24	KANK4 (ENSMMUG00000010351) #25	L1TD1 (ENSMMUG00000006485) #26	ENSMMUG00000064743 #27	PATJ (ENSMMUG00000003113) #28	TM2D1 (ENSMMUG00000010931) #29	NFIA (ENSMMUG00000013840) #30	ENSMMUG00000052202 #31	C1H1orf87 (ENSMMUG00000006756) #32	CYP2J2 (ENSMMUG00000015972) #33	HOOK1 (ENSMMUG00000012850) #34	FGGY (ENSMMUG00000002387) #35	JUN (ENSMMUG00000059326) #36	MYSM1 (ENSMMUG00000011800) #37
Crab-eating macaque	MODERN SPECIES		LEPROT (ENSMFAG00000033874)	DNAJC6 (ENSMFAG00000044659)	AK4 (ENSMFAG00000029324)	JAK1 (ENSMFAG00000003493)	RAVER2 (ENSMFAG00000031436) #7	CACHD1 (ENSMFAG00000037670) #9	UBE2U (ENSMFAG00000024825) #10	ROR1 (ENSMFAG00000041091) #12	ENSMFAG00000022559	EFCAB7 (ENSMFAG00000001765)	ENSMFAG00000040062 #15	ALG6 (ENSMFAG00000041396) #16	FOXD3 (ENSMFAG00000052856) #17	ATG4C (ENSMFAG00000038279) #19	ENSMFAG00000058446 #21	DOCK7 (ENSMFAG00000032390) #22	ANGPTL3 (ENSMFAG00000007083) #23	USP1 (ENSMFAG00000043530) #24	KANK4 (ENSMFAG00000032159) #25	L1TD1 (ENSMFAG00000031887) #26	PATJ (ENSMFAG00000044826) #28	ENSMFAG00000034621 #31	TM2D1 (ENSMFAG00000040223) #29	NFIA (ENSMFAG00000045828) #30	C1orf87 (ENSMFAG00000044638) #32	CYP2J2 (ENSMFAG00000003319) #33	HOOK1 (ENSMFAG00000000847) #34	FGGY (ENSMFAG00000037904) #35	JUN (ENSMFAG00000050244) #36	MYSM1 (ENSMFAG00000002666) #37	OMA1 (ENSMFAG00000033064)
Pig-tailed macaque	MODERN SPECIES	217							ENSMNEG00000034714	ROR1 (ENSMNEG00000009711) #12	PGM1 (ENSMNEG00000039633) #14	EFCAB7 (ENSMNEG00000042983)	ITGB3BP (ENSMNEG00000029344) #15	ALG6 (ENSMNEG00000004099) #16	FOXD3 (ENSMNEG00000021981) #17	ATG4C (ENSMNEG00000038662) #19	ANGPTL3 (ENSMNEG00000031218) #23	DOCK7 (ENSMNEG00000032463) #22	USP1 (ENSMNEG00000033298) #24	KANK4 (ENSMNEG00000032440) #25	L1TD1 (ENSMNEG00000030098) #26	ENSMNEG00000030822 #31	PATJ (ENSMNEG00000022006) #28	TM2D1 (ENSMNEG00000034247) #29	NFIA (ENSMNEG00000033257) #30	ENSMNEG00000029281	C1orf87 (ENSMNEG00000039821) #32	CYP2J2 (ENSMNEG00000029436) #33	HOOK1 (ENSMNEG00000005935) #34	ENSMNEG00000033506	FGGY (ENSMNEG00000028693) #35	MYSM1 (ENSMNEG00000033542) #37	TACSTD2 (ENSMNEG00000027286)
Cercopithecinae_b	ANCESTRAL SPECIES	1	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568.q.a.a.a	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Olive baboon	MODERN SPECIES		ENSPANG00000031367	ENSPANG00000049418	ROR1 (ENSPANG00000023470) #12	ENSPANG00000023471 #14	ITGB3BP (ENSPANG00000024945) #15	ALG6 (ENSPANG00000004754) #16	FOXD3 (ENSPANG00000017676) #17	ENSPANG00000038350 ##20	ENSPANG00000048165	ENSPANG00000049429	ENSPANG00000043207 ##11	ENSPANG00000041773	ENSPANG00000049405	ATG4C (ENSPANG00000020948) #19	ANGPTL3 (ENSPANG00000025663) #23	DOCK7 (ENSPANG00000005717) #22	USP1 (ENSPANG00000024232) #24	ENSPANG00000011286	ENSPANG00000034374	ENSPANG00000012982 #25	ENSPANG00000038690	L1TD1 (ENSPANG00000021627) #26	ENSPANG00000037323	ENSPANG00000044519	ENSPANG00000034202	ENSPANG00000034918 ##8	PATJ (ENSPANG00000016676) #28	ENSPANG00000039335	ENSPANG00000049463	TM2D1 (ENSPANG00000031405) #29	NFIA (ENSPANG00000024741) #30
Cercopithecinae_d	ANCESTRAL SPECIES	19	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568.q.a.a.b.a	ENSGT00940000162491.b.b	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00390000012628.b	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Drill	MODERN SPECIES	993								ENSMLEG00000025012	ENSMLEG00000016772	PGM1 (ENSMLEG00000040797) #14	EFCAB7 (ENSMLEG00000041472)	ITGB3BP (ENSMLEG00000036627) #15	ALG6 (ENSMLEG00000034023) #16	ATG4C (ENSMLEG00000039717) #19	ANGPTL3 (ENSMLEG00000040589) #23	DOCK7 (ENSMLEG00000030429) #22	USP1 (ENSMLEG00000032996) #24	ENSMLEG00000040169	KANK4 (ENSMLEG00000034730) #25	L1TD1 (ENSMLEG00000039743) #26	PATJ (ENSMLEG00000035822) #28	TM2D1 (ENSMLEG00000042294) #29
Sooty mangabey	MODERN SPECIES	238	DNAJC6 (ENSCATG00000034774)	AK4 (ENSCATG00000029189)	ENSCATG00000041319	JAK1 (ENSCATG00000041174)	RAVER2 (ENSCATG00000040658) #7	ENSCATG00000001153	CACHD1 (ENSCATG00000036728) #9	UBE2U (ENSCATG00000040169) #10	ROR1 (ENSCATG00000032220) #12	PGM1 (ENSCATG00000043055) #14	EFCAB7 (ENSCATG00000034513)	ITGB3BP (ENSCATG00000041208) #15	ALG6 (ENSCATG00000042255) #16	FOXD3 (ENSCATG00000018412) #17	ATG4C (ENSCATG00000042641) #19	DOCK7 (ENSCATG00000040198) #22	ANGPTL3 (ENSCATG00000012804) #23	USP1 (ENSCATG00000015135) #24	ENSCATG00000019757	KANK4 (ENSCATG00000036371) #25	L1TD1 (ENSCATG00000038295) #26	PATJ (ENSCATG00000039233) #28	ENSCATG00000037296 #31	TM2D1 (ENSCATG00000041406) #29	NFIA (ENSCATG00000012748) #30	ENSCATG00000040049	C1orf87 (ENSCATG00000044396) #32	CYP2J2 (ENSCATG00000040512) #33	HOOK1 (ENSCATG00000041461) #34	FGGY (ENSCATG00000044444) #35	ENSCATG00000041119
Vervet Monkey	MODERN SPECIES	12	PDE4B (ENSCSAG00000001355)	LEPR (ENSCSAG00000001354)	LEPROT (ENSCSAG00000001353)	DNAJC6 (ENSCSAG00000001352)	JAK1 (ENSCSAG00000001351)	RAVER2 (ENSCSAG00000001350) #7	CACHD1 (ENSCSAG00000001349) #9	UBE2U (ENSCSAG00000001348) #10	ROR1 (ENSCSAG00000001347) #12	PGM1 (ENSCSAG00000001346) #14	EFCAB7 (ENSCSAG00000001345)	ITGB3BP (ENSCSAG00000001344) #15	ALG6 (ENSCSAG00000001343) #16	FOXD3 (ENSCSAG00000000150) #17	ATG4C (ENSCSAG00000001342) #19	DOCK7 (ENSCSAG00000001341) #22	ANGPTL3 (ENSCSAG00000001340) #23	USP1 (ENSCSAG00000001339) #24	KANK4 (ENSCSAG00000001338) #25	L1TD1 (ENSCSAG00000001337) #26	PATJ (ENSCSAG00000001336) #28	TM2D1 (ENSCSAG00000001335) #29	ENSCSAG00000001334 #30	ENSCSAG00000001333 #30	C1orf87 (ENSCSAG00000001332) #32	CYP2J2 (ENSCSAG00000001331) #33	HOOK1 (ENSCSAG00000001330) #34	ENSCSAG00000001329	FGGY (ENSCSAG00000001328) #35	ENSCSAG00000001327	JUN (ENSCSAG00000000149) #36
Rhinopithecus	ANCESTRAL SPECIES	10	ENSGT00940000158755	ENSGT00940000154568.q.a.a.a	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00390000012628.a.a.d	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00390000006247 #31	ENSGT00940000161331	ENSGT00940000159534	ENSGT00910000147898	ENSGT00940000158688	ENSGT00940000160210	ENSGT00940000159669	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000163351
Golden snub-nosed monkey	MODERN SPECIES	1530	JAK1 (ENSRROG00000043516)	RAVER2 (ENSRROG00000041867) #7	CACHD1 (ENSRROG00000045428) #9	UBE2U (ENSRROG00000038838) #10	ENSRROG00000022599	ROR1 (ENSRROG00000040188) #12	ENSRROG00000026656	ENSRROG00000029309	PGM1 (ENSRROG00000039585) #14	EFCAB7 (ENSRROG00000040009)	ITGB3BP (ENSRROG00000042197) #15	ALG6 (ENSRROG00000035629) #16	ENSRROG00000006458	ATG4C (ENSRROG00000013654) #19	ANGPTL3 (ENSRROG00000017394) #23	DOCK7 (ENSRROG00000040277) #22	USP1 (ENSRROG00000028426) #24	KANK4 (ENSRROG00000007321) #25	L1TD1 (ENSRROG00000042567) #26	ENSRROG00000023749 #31	PATJ (ENSRROG00000010773) #28	TM2D1 (ENSRROG00000035570) #29	NFIA (ENSRROG00000026343) #30	C1orf87 (ENSRROG00000040441) #32	CYP2J2 (ENSRROG00000034996) #33
Black snub-nosed monkey	MODERN SPECIES	569	DNAJC6 (ENSRBIG00000036399)	AK4 (ENSRBIG00000035967)	JAK1 (ENSRBIG00000010792)	RAVER2 (ENSRBIG00000044090) #7	CACHD1 (ENSRBIG00000044274) #9	UBE2U (ENSRBIG00000044579) #10	ROR1 (ENSRBIG00000029149) #12	ENSRBIG00000004039	PGM1 (ENSRBIG00000035757) #14	EFCAB7 (ENSRBIG00000029286)	ITGB3BP (ENSRBIG00000037404) #15	ALG6 (ENSRBIG00000035347) #16	ENSRBIG00000026600 #17	ENSRBIG00000026704	ATG4C (ENSRBIG00000027148) #19	DOCK7 (ENSRBIG00000036983) #22	ANGPTL3 (ENSRBIG00000033798) #23	USP1 (ENSRBIG00000041920) #24	ENSRBIG00000035631 #25	L1TD1 (ENSRBIG00000005782) #26	PATJ (ENSRBIG00000043813) #28	ENSRBIG00000034372 #31	TM2D1 (ENSRBIG00000032068) #29	NFIA (ENSRBIG00000032076) #30	ENSRBIG00000019391	C1orf87 (ENSRBIG00000026690) #32	CYP2J2 (ENSRBIG00000034286) #33	HOOK1 (ENSRBIG00000004303) #34	FGGY (ENSRBIG00000028365) #35	MYSM1 (ENSRBIG00000036261) #37	TACSTD2 (ENSRBIG00000030173)
Hominoidea	ANCESTRAL SPECIES	3	ENSGT00940000154568.q.a.a.a	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00390000012628.a.a.d	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Hominidae	ANCESTRAL SPECIES	3	ENSGT00940000154568.q.a.a.a	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00390000012628.a.a.d	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00940000158755	ENSGT00940000154568.q.a.a.a	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00390000012628.a.a.d	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT00940000158755	ENSGT00940000154568.q.a.a.a	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00390000012628.a.a.d	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Pan	ANCESTRAL SPECIES		ENSGT00940000154568.q.a.b	ENSGT00940000162491.b.b	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00390000012628.a.a.d	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027	ENSGT00940000158038
Bonobo	MODERN SPECIES		AK4 (ENSPPAG00000038137)	ENSPPAG00000009778	ENSPPAG00000040529	JAK1 (ENSPPAG00000015344)	RAVER2 (ENSPPAG00000039189) #7	CACHD1 (ENSPPAG00000012742) #9	UBE2U (ENSPPAG00000040025) #10	ENSPPAG00000023862	ROR1 (ENSPPAG00000010111) #12	PGM1 (ENSPPAG00000037068) #14	EFCAB7 (ENSPPAG00000043777)	ITGB3BP (ENSPPAG00000032358) #15	ALG6 (ENSPPAG00000035533) #16	ATG4C (ENSPPAG00000043147) #19	ANGPTL3 (ENSPPAG00000030674) #23	DOCK7 (ENSPPAG00000016435) #22	USP1 (ENSPPAG00000028383) #24	KANK4 (ENSPPAG00000009408) #25	L1TD1 (ENSPPAG00000043606) #26	ENSPPAG00000039699 #31	PATJ (ENSPPAG00000039589) #28	TM2D1 (ENSPPAG00000029011) #29	NFIA (ENSPPAG00000001224) #30	C1orf87 (ENSPPAG00000033458) #32	CYP2J2 (ENSPPAG00000041228) #33	HOOK1 (ENSPPAG00000038359) #34	FGGY (ENSPPAG00000030850) #35	MYSM1 (ENSPPAG00000036220) #37	TACSTD2 (ENSPPAG00000011467)	OMA1 (ENSPPAG00000012992)	DAB1 (ENSPPAG00000031768)
Chimpanzee	MODERN SPECIES		AK4 (ENSPTRG00000000827)	ENSPTRG00000048144	JAK1 (ENSPTRG00000000825)	RAVER2 (ENSPTRG00000000824) #7	CACHD1 (ENSPTRG00000000823) #9	UBE2U (ENSPTRG00000000822) #10	ENSPTRG00000045538	ROR1 (ENSPTRG00000024245) #12	PGM1 (ENSPTRG00000000820) #14	EFCAB7 (ENSPTRG00000030579)	ITGB3BP (ENSPTRG00000000816) #15	ALG6 (ENSPTRG00000000815) #16	FOXD3 (ENSPTRG00000030580) #17	ATG4C (ENSPTRG00000000813) #19	ANGPTL3 (ENSPTRG00000000812) #23	DOCK7 (ENSPTRG00000000811) #22	USP1 (ENSPTRG00000000810) #24	KANK4 (ENSPTRG00000000809) #25	L1TD1 (ENSPTRG00000034387) #26	ENSPTRG00000044616 #31	ENSPTRG00000052807	PATJ (ENSPTRG00000000806) #28	TM2D1 (ENSPTRG00000000803) #29	ENSPTRG00000045390	NFIA (ENSPTRG00000000802) #30	C1H1orf87 (ENSPTRG00000000801) #32	CYP2J2 (ENSPTRG00000000800) #33	HOOK1 (ENSPTRG00000000799) #34	FGGY (ENSPTRG00000000798) #35	MYSM1 (ENSPTRG00000000796) #37	TACSTD2 (ENSPTRG00000000795)
Human	MODERN SPECIES		LEPROT (ENSG00000213625)	DNAJC6 (ENSG00000116675)	AK4 (ENSG00000162433)	JAK1 (ENSG00000162434)	RAVER2 (ENSG00000162437) #7	CACHD1 (ENSG00000158966) #9	UBE2U (ENSG00000177414) #10	ROR1 (ENSG00000185483) #12	PGM1 (ENSG00000079739) #14	EFCAB7 (ENSG00000203965)	ITGB3BP (ENSG00000142856) #15	ALG6 (ENSG00000088035) #16	FOXD3 (ENSG00000187140) #17	ATG4C (ENSG00000125703) #19	ANGPTL3 (ENSG00000132855) #23	DOCK7 (ENSG00000116641) #22	USP1 (ENSG00000162607) #24	KANK4 (ENSG00000132854) #25	L1TD1 (ENSG00000240563) #26	PATJ (ENSG00000132849) #28	TM2D1 (ENSG00000162604) #29	NFIA (ENSG00000162599) #30	C1orf87 (ENSG00000162598) #32	CYP2J2 (ENSG00000134716) #33	HOOK1 (ENSG00000134709) #34	FGGY (ENSG00000172456) #35	JUN (ENSG00000177606) #36	MYSM1 (ENSG00000162601) #37	TACSTD2 (ENSG00000184292)	OMA1 (ENSG00000162600)	DAB1 (ENSG00000173406)
Gorilla	MODERN SPECIES		AK4 (ENSGGOG00000026644)	ENSGGOG00000025825	JAK1 (ENSGGOG00000016456)	RAVER2 (ENSGGOG00000016447) #7	CACHD1 (ENSGGOG00000007691) #9	UBE2U (ENSGGOG00000001480) #10	ENSGGOG00000043317	ROR1 (ENSGGOG00000013797) #12	PGM1 (ENSGGOG00000016004) #14	EFCAB7 (ENSGGOG00000012467)	ITGB3BP (ENSGGOG00000004727) #15	ALG6 (ENSGGOG00000015986) #16	ENSGGOG00000027326 #17	ATG4C (ENSGGOG00000007252) #19	ANGPTL3 (ENSGGOG00000003946) #23	DOCK7 (ENSGGOG00000025768) #22	USP1 (ENSGGOG00000024567) #24	KANK4 (ENSGGOG00000041061) #25	L1TD1 (ENSGGOG00000026365) #26	ENSGGOG00000023722 #31	PATJ (ENSGGOG00000010129) #28	TM2D1 (ENSGGOG00000008515) #29	ENSGGOG00000043907	ENSGGOG00000036939 #30	ENSGGOG00000043710	ENSGGOG00000027445 #30	C1orf87 (ENSGGOG00000011908) #32	CYP2J2 (ENSGGOG00000001607) #33	HOOK1 (ENSGGOG00000015355) #34	FGGY (ENSGGOG00000036583) #35	MYSM1 (ENSGGOG00000005238) #37
Orangutan	MODERN SPECIES		LEPROT (ENSPPYG00000035587)	DNAJC6 (ENSPPYG00000010671)	AK4 (ENSPPYG00000001269)	JAK1 (ENSPPYG00000001270)	RAVER2 (ENSPPYG00000001271) #7	CACHD1 (ENSPPYG00000001272) #9	ENSPPYG00000001273 #10	ROR1 (ENSPPYG00000001274) #12	ENSPPYG00000040176	PGM1 (ENSPPYG00000029788) #14	EFCAB7 (ENSPPYG00000001275)	ITGB3BP (ENSPPYG00000001276) #15	ALG6 (ENSPPYG00000001277) #16	FOXD3 (ENSPPYG00000001278) #17	ATG4C (ENSPPYG00000001279) #19	DOCK7 (ENSPPYG00000001280) #22	ANGPTL3 (ENSPPYG00000001283) #23	USP1 (ENSPPYG00000001284) #24	KANK4 (ENSPPYG00000001285) #25	L1TD1 (ENSPPYG00000001286) #26	PATJ (ENSPPYG00000001287) #28	ENSPPYG00000001288 #29	NFIA (ENSPPYG00000001290) #30	C1orf87 (ENSPPYG00000001291) #32	CYP2J2 (ENSPPYG00000001292) #33	HOOK1 (ENSPPYG00000001293) #34	FGGY (ENSPPYG00000001294) #35	JUN (ENSPPYG00000001295) #36	MYSM1 (ENSPPYG00000001296) #37	TACSTD2 (ENSPPYG00000001297)	OMA1 (ENSPPYG00000001298)
Gibbon	MODERN SPECIES	20	ENSNLEG00000031560	ENSNLEG00000035125	JAK1 (ENSNLEG00000015149)	RAVER2 (ENSNLEG00000015145) #7	CACHD1 (ENSNLEG00000015119) #9	UBE2U (ENSNLEG00000015108) #10	ENSNLEG00000032734	ENSNLEG00000031572	ROR1 (ENSNLEG00000015103) #12	PGM1 (ENSNLEG00000015083) #14	EFCAB7 (ENSNLEG00000015076)	ENSNLEG00000015070 #15	ALG6 (ENSNLEG00000015063) #16	ATG4C (ENSNLEG00000015041) #19	ANGPTL3 (ENSNLEG00000015025) #23	DOCK7 (ENSNLEG00000014928) #22	USP1 (ENSNLEG00000014915) #24	KANK4 (ENSNLEG00000014906) #25	L1TD1 (ENSNLEG00000014904) #26	PATJ (ENSNLEG00000014847) #28	TM2D1 (ENSNLEG00000014839) #29	NFIA (ENSNLEG00000014835) #30	C1orf87 (ENSNLEG00000014828) #32	CYP2J2 (ENSNLEG00000014820) #33	HOOK1 (ENSNLEG00000014800) #34	FGGY (ENSNLEG00000014781) #35	ENSNLEG00000014776 #36	MYSM1 (ENSNLEG00000014766) #37	TACSTD2 (ENSNLEG00000018323)	OMA1 (ENSNLEG00000014763)	ENSNLEG00000029989
Platyrrhini	ANCESTRAL SPECIES		ENSGT00940000154568.q.a.a.a	ENSGT00940000154568.q.a.a.b	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668.e #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027	ENSGT00940000153112.D.n.a.a.a.b	ENSGT00940000158038
Mas night monkey	MODERN SPECIES	1222	JAK1 (ENSANAG00000036647)	ENSANAG00000032030	RAVER2 (ENSANAG00000025857) #7	CACHD1 (ENSANAG00000033660) #9	UBE2U (ENSANAG00000033933) #10	ENSANAG00000019274	ROR1 (ENSANAG00000025721) #12	PGM1 (ENSANAG00000027470) #14	EFCAB7 (ENSANAG00000026634)	ITGB3BP (ENSANAG00000028085) #15	ALG6 (ENSANAG00000022443) #16	ENSANAG00000029682	FOXD3 (ENSANAG00000002392) #17	ATG4C (ENSANAG00000022513) #19	ANGPTL3 (ENSANAG00000015249) #23	DOCK7 (ENSANAG00000016461) #22	USP1 (ENSANAG00000034698) #24	KANK4 (ENSANAG00000036007) #25	ENSANAG00000036983	PATJ (ENSANAG00000000542) #28	ENSANAG00000034084 #29	ENSANAG00000037649	ENSANAG00000003030	ENSANAG00000030015	NFIA (ENSANAG00000036346) #30	C1orf87 (ENSANAG00000023663) #32	CYP2J2 (ENSANAG00000033520) #33	HOOK1 (ENSANAG00000033388) #34	FGGY (ENSANAG00000036832) #35	MYSM1 (ENSANAG00000023099) #37	TACSTD2 (ENSANAG00000005680)
Cebidae	ANCESTRAL SPECIES	1	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568.q.a.a.b	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243.e #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668.e #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027	ENSGT00940000153385.b.a.b.mc
Marmoset	MODERN SPECIES	19	ENSCJAG00000046466	JAK1 (ENSCJAG00000016743)	RAVER2 (ENSCJAG00000016724) #7	CACHD1 (ENSCJAG00000016656) #9	UBE2U (ENSCJAG00000016640) #10	ENSCJAG00000055857	ROR1 (ENSCJAG00000016620) #12	ENSCJAG00000016590 #14	ENSCJAG00000078165	ITGB3BP (ENSCJAG00000016555) #15	ALG6 (ENSCJAG00000016521) #16	ENSCJAG00000082160	ENSCJAG00000081048 #8	ATG4C (ENSCJAG00000016480) #19	ANGPTL3 (ENSCJAG00000016461) #23	DOCK7 (ENSCJAG00000016311) #22	USP1 (ENSCJAG00000016287) #24	KANK4 (ENSCJAG00000016275) #25	PATJ (ENSCJAG00000016186) #28	TM2D1 (ENSCJAG00000042963) #29	ENSCJAG00000078946	NFIA (ENSCJAG00000016165) #30	ENSCJAG00000022998	ENSCJAG00000053189	C1orf87 (ENSCJAG00000016137) #32	CYP2J2 (ENSCJAG00000016130) #33	HOOK1 (ENSCJAG00000016077) #34	ENSCJAG00000022957	FGGY (ENSCJAG00000016043) #35	MYSM1 (ENSCJAG00000016020) #37	TACSTD2 (ENSCJAG00000016017)
Cebidae_a	ANCESTRAL SPECIES		ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568.q.a.b	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243.e.a #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668.e #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027	ENSGT00940000153385.b.a.b.mc
Bolivian squirrel monkey	MODERN SPECIES	45	ENSSBOG00000022771	JAK1 (ENSSBOG00000024631)	RAVER2 (ENSSBOG00000023706) #7	CACHD1 (ENSSBOG00000028299) #9	UBE2U (ENSSBOG00000023301) #10	ROR1 (ENSSBOG00000019997) #12	ENSSBOG00000021546	PGM1 (ENSSBOG00000025450) #14	EFCAB7 (ENSSBOG00000024450)	ENSSBOG00000033167 #15	ALG6 (ENSSBOG00000020498) #16	ENSSBOG00000022938	ENSSBOG00000033019	ENSSBOG00000012669	ATG4C (ENSSBOG00000032872) #19	DOCK7 (ENSSBOG00000027948) #22	ANGPTL3 (ENSSBOG00000035830) #23	USP1 (ENSSBOG00000020735) #24	KANK4 (ENSSBOG00000020644) #25	PATJ (ENSSBOG00000022857) #28	ENSSBOG00000028010 #29	ENSSBOG00000028260	NFIA (ENSSBOG00000030190) #30	ENSSBOG00000024205	C1orf87 (ENSSBOG00000033425) #32	CYP2J2 (ENSSBOG00000033096) #33	HOOK1 (ENSSBOG00000032069) #34	FGGY (ENSSBOG00000031213) #35	ENSSBOG00000029734	MYSM1 (ENSSBOG00000031552) #37	TACSTD2 (ENSSBOG00000024148)
Capuchin	MODERN SPECIES	135	ENSCCAG00000026470	JAK1 (ENSCCAG00000021638)	RAVER2 (ENSCCAG00000029834) #7	CACHD1 (ENSCCAG00000023418) #9	UBE2U (ENSCCAG00000015166) #10	ROR1 (ENSCCAG00000036191) #12	PGM1 (ENSCCAG00000022674) #14	EFCAB7 (ENSCCAG00000030206)	ITGB3BP (ENSCCAG00000023808) #15	ENSCCAG00000023464	ENSCCAG00000019669	ALG6 (ENSCCAG00000026213) #16	ENSCCAG00000037577	FOXD3 (ENSCCAG00000020242) #17	ATG4C (ENSCCAG00000014124) #19	DOCK7 (ENSCCAG00000036383) #22	ANGPTL3 (ENSCCAG00000037800) #23	ENSCCAG00000032139 #24	KANK4 (ENSCCAG00000020881) #25	PATJ (ENSCCAG00000020603) #28	ENSCCAG00000031088	ENSCCAG00000037571 #29	NFIA (ENSCCAG00000034568) #30	ENSCCAG00000002026
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	5580																ENSTSYG00000036091 #22	USP1 (ENSTSYG00000031006) #24	KANK4 (ENSTSYG00000003894) #25	PATJ (ENSTSYG00000011484) #28	TM2D1 (ENSTSYG00000000632) #29	NFIA (ENSTSYG00000014719) #30
Tarsier	MODERN SPECIES	6196													ATG4C (ENSTSYG00000009586) #19	ENSTSYG00000033863	ANGPTL3 (ENSTSYG00000009716) #23	ENSTSYG00000033273 #22
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Bushbaby	MODERN SPECIES	181											ROR1 (ENSOGAG00000005259) #12	PGM1 (ENSOGAG00000005257) #14	EFCAB7 (ENSOGAG00000005254)	ATG4C (ENSOGAG00000004020) #19	ANGPTL3 (ENSOGAG00000009379) #23	DOCK7 (ENSOGAG00000009360) #22	USP1 (ENSOGAG00000009357) #24	KANK4 (ENSOGAG00000031366) #25	PATJ (ENSOGAG00000002988) #28	TM2D1 (ENSOGAG00000002838) #29	NFIA (ENSOGAG00000033949) #30	ENSOGAG00000026267	C1orf87 (ENSOGAG00000011715) #32	CYP2J81 (ENSOGAG00000030361) #33	CYP2J80 (ENSOGAG00000025873) #33	CYP2J2 (ENSOGAG00000024697) #33	HOOK1 (ENSOGAG00000014723) #34	FGGY (ENSOGAG00000014721) #35	JUN (ENSOGAG00000005602) #36	MYSM1 (ENSOGAG00000004571) #37	TACSTD2 (ENSOGAG00000011588)
Lemuriformes	ANCESTRAL SPECIES		ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Mouse lemur	MODERN SPECIES	11	ENSMICG00000047975	ZRANB2 (ENSMICG00000033818)	ENSMICG00000033235	NEGR1 (ENSMICG00000046222)	FPGT (ENSMICG00000047410)	TNNI3K (ENSMICG00000015807)	LRRC53 (ENSMICG00000044386)	ERICH3 (ENSMICG00000038155)	ENSMICG00000037361	EFCAB7 (ENSMICG00000013626)	ENSMICG00000042686	ENSMICG00000046047 #15	ALG6 (ENSMICG00000000388) #16	FOXD3 (ENSMICG00000044158) #17	ATG4C (ENSMICG00000001538) #19	DOCK7 (ENSMICG00000001507) #22	ANGPTL3 (ENSMICG00000001535) #23	USP1 (ENSMICG00000001502) #24	KANK4 (ENSMICG00000001495) #25	L1TD1 (ENSMICG00000045847) #26	PATJ (ENSMICG00000014246) #28	ENSMICG00000014211 #29	ENSMICG00000012681	NFIA (ENSMICG00000005075) #30	C1orf87 (ENSMICG00000013485) #32	ENSMICG00000013472 #33	CYP2J90P (ENSMICG00000008762) #33	HOOK1 (ENSMICG00000027305) #34	FGGY (ENSMICG00000013422) #35	MYSM1 (ENSMICG00000030414) #37	OMA1 (ENSMICG00000005121)
Lemuriformes_a	ANCESTRAL SPECIES	20	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027	ENSGT00940000158038
Coquerels sifaka	MODERN SPECIES	162	LEPROT (ENSPCOG00000027148)	DNAJC6 (ENSPCOG00000021196)	ENSPCOG00000025120	JAK1 (ENSPCOG00000018189)	RAVER2 (ENSPCOG00000028379) #7	CACHD1 (ENSPCOG00000018645) #9	UBE2U (ENSPCOG00000025850) #10	ROR1 (ENSPCOG00000013692) #12	PGM1 (ENSPCOG00000019160) #14	EFCAB7 (ENSPCOG00000022247)	ITGB3BP (ENSPCOG00000016479) #15	ALG6 (ENSPCOG00000013331) #16	FOXD3 (ENSPCOG00000004911) #17	ENSPCOG00000001381	ATG4C (ENSPCOG00000012978) #19	DOCK7 (ENSPCOG00000015316) #22	ENSPCOG00000018206	ANGPTL3 (ENSPCOG00000017735) #23	USP1 (ENSPCOG00000027490) #24	KANK4 (ENSPCOG00000016012) #25	L1TD1 (ENSPCOG00000005879) #26	PATJ (ENSPCOG00000016693) #28	TM2D1 (ENSPCOG00000009377) #29	ENSPCOG00000026994	ENSPCOG00000013689	NFIA (ENSPCOG00000024842) #30	C1orf87 (ENSPCOG00000021292) #32	CYP2J89 (ENSPCOG00000020225) #33	CYP2J2 (ENSPCOG00000026699) #33	FGGY (ENSPCOG00000028613) #35	MYSM1 (ENSPCOG00000016519) #37
Greater bamboo lemur	MODERN SPECIES	1434																ENSPSMG00000009657 #22	USP1 (ENSPSMG00000009635) #24
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Tree shrew	MODERN SPECIES	3008														ATG4C (ENSTBEG00000010880) #19	ENSTBEG00000010769 #23	DOCK7 (ENSTBEG00000010087) #22	USP1 (ENSTBEG00000009949) #24
Glires	ANCESTRAL SPECIES		ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Lagomorpha	ANCESTRAL SPECIES	8	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027	ENSGT00940000158038	ENSGT00940000160247	ENSGT00940000160126
Rabbit	MODERN SPECIES	4	DNAJC6 (ENSOCUG00000010020)	ENSOCUG00000010012	JAK1 (ENSOCUG00000006227)	RAVER2 (ENSOCUG00000006221) #7	CACHD1 (ENSOCUG00000015532) #9	ENSOCUG00000003109	UBE2U (ENSOCUG00000000932) #10	ROR1 (ENSOCUG00000023790) #12	ENSOCUG00000031933	PGM1 (ENSOCUG00000038711) #14	EFCAB7 (ENSOCUG00000000286)	ITGB3BP (ENSOCUG00000035590) #15	ALG6 (ENSOCUG00000000281) #16	ENSOCUG00000036422	ATG4C (ENSOCUG00000007695) #19	DOCK7 (ENSOCUG00000012948) #22	ANGPTL3 (ENSOCUG00000000906) #23	ENSOCUG00000035373	USP1 (ENSOCUG00000012942) #24	KANK4 (ENSOCUG00000007701) #25	PATJ (ENSOCUG00000015766) #28	TM2D1 (ENSOCUG00000010235) #29	ENSOCUG00000035109	NFIA (ENSOCUG00000005893) #30	ENSOCUG00000016077 #32	CYP2J1 (ENSOCUG00000004199) #33	HOOK1 (ENSOCUG00000004180) #34	ENSOCUG00000000936	JUN (ENSOCUG00000001212) #36	MYSM1 (ENSOCUG00000029356) #37	TACSTD2 (ENSOCUG00000013892)
Pika	MODERN SPECIES	2685															ANGPTL3 (ENSOPRG00000015785) #23	DOCK7 (ENSOPRG00000015718) #22	USP1 (ENSOPRG00000015697) #24
Rodentia	ANCESTRAL SPECIES		ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Rodentia_B	ANCESTRAL SPECIES		ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00950000182879.b	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Kangaroo rat	MODERN SPECIES	370	Mier1 (ENSDORG00000002114)	Sgip1 (ENSDORG00000001885)	Pde4b (ENSDORG00000010712)	Leprot (ENSDORG00000005691)	Dnajc6 (ENSDORG00000005685)	Ak4 (ENSDORG00000023966)	Jak1 (ENSDORG00000013462)	Raver2 (ENSDORG00000002498) #7	Cachd1 (ENSDORG00000011104) #9	Ror1 (ENSDORG00000014715) #12	Pgm1 (ENSDORG00000006501) #14	Efcab7 (ENSDORG00000013731)	Alg6 (ENSDORG00000013729) #16	Atg4c (ENSDORG00000027209) #19	Angptl3 (ENSDORG00000008279) #23	Dock7 (ENSDORG00000008269) #22	Usp1 (ENSDORG00000008268) #24	ENSDORG00000029852 #25	Snrnp40 (ENSDORG00000004126)	Zcchc17 (ENSDORG00000004128)	Fabp3 (ENSDORG00000024318)	Serinc2 (ENSDORG00000001817)	Ldc1 (ENSDORG00000029290)	Tinagl1 (ENSDORG00000014387)	Hcrtr1 (ENSDORG00000014389)	Pef1 (ENSDORG00000014391)	ENSDORG00000014393	ENSDORG00000026075	Adgrb2 (ENSDORG00000014398)	ENSDORG00000014399	Ptp4a2 (ENSDORG00000029587)
Myomorpha	ANCESTRAL SPECIES	55	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00860000136250	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00950000182879.b	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	98			ENSJJAG00000021591	Jak1 (ENSJJAG00000022247)	Raver2 (ENSJJAG00000000374) #7	ENSJJAG00000002474	Cachd1 (ENSJJAG00000007547) #9	ENSJJAG00000009546	Ror1 (ENSJJAG00000010121) #12	Pgm1 (ENSJJAG00000011313) #14	Efcab7 (ENSJJAG00000011831)	Alg6 (ENSJJAG00000012437) #16	Foxd3 (ENSJJAG00000015766) #17	ENSJJAG00000016061	Atg4c (ENSJJAG00000016837) #19	Dock7 (ENSJJAG00000011659) #22	Angptl3 (ENSJJAG00000016186) #23	Usp1 (ENSJJAG00000017329) #24	ENSJJAG00000019020 #25	Patj (ENSJJAG00000022235) #28	Tm2d1 (ENSJJAG00000008343) #29	ENSJJAG00000010329	Nfia (ENSJJAG00000012495) #30	ENSJJAG00000013782	ENSJJAG00000016141	ENSJJAG00000016230	ENSJJAG00000016631 #33	Hook1 (ENSJJAG00000017805) #34	Fggy (ENSJJAG00000021024) #35	ENSJJAG00000022820	Jun (ENSJJAG00000001078) #36
Lesser Egyptian jerboa	MODERN SPECIES	162																ENSJJAG00000012393 #22	Tmem132c (ENSJJAG00000014015)	Slc15a4 (ENSJJAG00000014620)	Glt1d1 (ENSJJAG00000020231)	Tmem132d (ENSJJAG00000021878)	Fzd10 (ENSJJAG00000012434)	Piwil1 (ENSJJAG00000022411)	Rimbp2 (ENSJJAG00000023645)	Stx2 (ENSJJAG00000010700)	Ran (ENSJJAG00000012009)	Adgrd1 (ENSJJAG00000014453)	ENSJJAG00000024181	ENSJJAG00000000172	Sfswap (ENSJJAG00000006609)	Mmp17 (ENSJJAG00000010485)	Ulk1 (ENSJJAG00000016623)
Muroidea	ANCESTRAL SPECIES	3	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00860000136250	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00950000182879.b.a.a	ENSGT00950000182879.b.a.b.b	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00860000136250	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00950000182879.b.a.a	ENSGT00940000155417.a.a #33	ENSGT00950000182879.b.a.b.a.a	ENSGT00940000155417.b #33	ENSGT00950000182879.b.a.b.b	ENSGT00940000155417.a.b #33	ENSGT00940000159251 #34	ENSGT00900000143271
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00940000158755	ENSGT00940000154568.g.a	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00860000136250	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00950000182879.b.a.b.a.b	ENSGT00950000182879.b.a.b.a.a	ENSGT00940000155417.b #33	ENSGT00950000182879.b.a.b.b	ENSGT00940000155417.a.b #33	ENSGT00940000159251 #34	ENSGT00900000143271	ENSGT01000000214434.F #35
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00940000158755	ENSGT00940000154568.g.a	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00860000136250	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00950000182879.b.a.b.a.b	ENSGT00950000182879.b.a.b.a.a	ENSGT00940000155417.b #33	ENSGT00950000182879.b.a.b.b	ENSGT00940000155417.a.b #33	ENSGT00940000159251 #34	ENSGT00900000143271	ENSGT01000000214434.F #35
Northern American deer mouse	MODERN SPECIES	11	Ak4 (ENSPEMG00000016088)	Jak1 (ENSPEMG00000004628)	Raver2 (ENSPEMG00000001332) #7	Cachd1 (ENSPEMG00000018442) #9	ENSPEMG00000024764	ENSPEMG00000028140 #10	Ror1 (ENSPEMG00000009106) #12	Pgm1 (ENSPEMG00000000464) #14	Efcab7 (ENSPEMG00000018535)	Itgb3bp (ENSPEMG00000011292) #15	Alg6 (ENSPEMG00000018498) #16	ENSPEMG00000016606	ENSPEMG00000026760	Atg4c (ENSPEMG00000012725) #19	Angptl3 (ENSPEMG00000000689) #23	Dock7 (ENSPEMG00000018126) #22	Usp1 (ENSPEMG00000026352) #24	Kank4 (ENSPEMG00000012891) #25	L1td1 (ENSPEMG00000008068) #26	Patj (ENSPEMG00000014313) #28	Tm2d1 (ENSPEMG00000004612) #29	Nfia (ENSPEMG00000005756) #30	Gm12695 (ENSPEMG00000010497) #32	ENSPEMG00000009838	ENSPEMG00000026151 #33	Cyp2j9 (ENSPEMG00000000230) #33	Cyp2j6 (ENSPEMG00000017727)	ENSPEMG00000013709	ENSPEMG00000012209	Cyp2j13 (ENSPEMG00000018564) #33	Hook1 (ENSPEMG00000003851) #34
Prairie vole	MODERN SPECIES	1	Ak4 (ENSMOCG00000014444)	Jak1 (ENSMOCG00000011865)	Raver2 (ENSMOCG00000018087) #7	Cachd1 (ENSMOCG00000020004) #9	ENSMOCG00000013769 #10	ENSMOCG00000009548	Ror1 (ENSMOCG00000010797) #12	Pgm1 (ENSMOCG00000011278) #14	Efcab7 (ENSMOCG00000005332)	Itgb3bp (ENSMOCG00000020964) #15	Alg6 (ENSMOCG00000007266) #16	Foxd3 (ENSMOCG00000003755) #17	ENSMOCG00000021953	Atg4c (ENSMOCG00000013316) #19	Angptl3 (ENSMOCG00000010506) #23	Dock7 (ENSMOCG00000012407) #22	Usp1 (ENSMOCG00000013703) #24	Kank4 (ENSMOCG00000020622) #25	L1td1 (ENSMOCG00000007037) #26	Patj (ENSMOCG00000020085) #28	Tm2d1 (ENSMOCG00000007667) #29	ENSMOCG00000008446	Nfia (ENSMOCG00000007715) #30	Gm12695 (ENSMOCG00000013607) #32	ENSMOCG00000010318	Cyp2j6 (ENSMOCG00000018597)	ENSMOCG00000005805 #33	Or13p8 (ENSMOCG00000008289)	ENSMOCG00000012714	ENSMOCG00000022413	ENSMOCG00000015307
Cricetinae	ANCESTRAL SPECIES	5	ENSGT00940000158755	ENSGT00940000154568.g.a	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00860000136250	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00950000182879.b.a.b.a.b	ENSGT00950000182879.b.a.b.a.a	ENSGT00940000155417.b #33	ENSGT00950000182879.b.a.a	ENSGT00940000159251 #34	ENSGT00900000143271	ENSGT01000000214434.F #35	ENSGT00940000162061 #36
Chinese hamster chok1gshd	MODERN SPECIES	111	ENSCGRG00001003307	Jak1 (ENSCGRG00001008727)	Raver2 (ENSCGRG00001011852) #7	Cachd1 (ENSCGRG00001024125) #9	Ube2u (ENSCGRG00001024744) #10	ENSCGRG00001023231	Ror1 (ENSCGRG00001015667) #12	Pgm1 (ENSCGRG00001024185) #14	Efcab7 (ENSCGRG00001013291)	Itgb3bp (ENSCGRG00001023317) #15	Alg6 (ENSCGRG00001024513) #16	Foxd3 (ENSCGRG00001009393) #17	ENSCGRG00001002098	Atg4c (ENSCGRG00001000630) #19	ENSCGRG00001002780	Dock7 (ENSCGRG00001017762) #22	Angptl3 (ENSCGRG00001024053) #23	Usp1 (ENSCGRG00001018963) #24	Kank4 (ENSCGRG00001023583) #25	L1td1 (ENSCGRG00001024238) #26	Patj (ENSCGRG00001024524) #28	ENSCGRG00001014726	Tm2d1 (ENSCGRG00001017276) #29	Nfia (ENSCGRG00001000754) #30	Gm12695 (ENSCGRG00001014021) #32	ENSCGRG00001015523	Cyp2j6 (ENSCGRG00001017724)	ENSCGRG00001020085 #33	ENSCGRG00001005478	Hook1 (ENSCGRG00001001100) #34	ENSCGRG00001008656
Golden Hamster	MODERN SPECIES	662								Pgm1 (ENSMAUG00000000807) #14	Efcab7 (ENSMAUG00000012770)	Itgb3bp (ENSMAUG00000019227) #15	Alg6 (ENSMAUG00000018206) #16	Foxd3 (ENSMAUG00000008235) #17	ENSMAUG00000011992	Atg4c (ENSMAUG00000017548) #19	Angptl3 (ENSMAUG00000006669) #23	Dock7 (ENSMAUG00000005545) #22	Usp1 (ENSMAUG00000010459) #24	Kank4 (ENSMAUG00000020783) #25	L1td1 (ENSMAUG00000020769) #26	Patj (ENSMAUG00000021478) #28	Tm2d1 (ENSMAUG00000017246) #29	Nfia (ENSMAUG00000012950) #30	Gm12695 (ENSMAUG00000020018) #32	ENSMAUG00000003529	Cyp2j6 (ENSMAUG00000021242)	ENSMAUG00000021213 #33	ENSMAUG00000008711	Hook1 (ENSMAUG00000017707) #34	Fggy (ENSMAUG00000019211) #35	Jun (ENSMAUG00000007038) #36	ENSMAUG00000014400
Murinae	ANCESTRAL SPECIES	2	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00860000136250	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00860000136320	ENSGT00390000008678 #32	ENSGT00950000182879.b.a.a	ENSGT00940000155417.a.a #33	ENSGT00950000182879.b.a.b.b.d.a	ENSGT00950000182879.b.a.b.b.c	ENSGT00940000155417.a.b #33	ENSGT00940000159251 #34	ENSGT00900000143271
Mus	ANCESTRAL SPECIES	3	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00860000135728	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00860000136250	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00860000136189	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00860000136320	ENSGT00860000135704	ENSGT00390000008678 #32	ENSGT00950000182879.b.a.a	ENSGT00940000155417.a.a #33	ENSGT00950000182879.b.a.b.b.d.a	ENSGT00950000182879.b.a.b.b.c	ENSGT00940000155417.a.b #33
Mus_A	ANCESTRAL SPECIES	3	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00860000135728	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00860000136250	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00860000136189	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00860000136320	ENSGT00860000135704	ENSGT00390000008678 #32	ENSGT00950000182879.b.a.a	ENSGT00940000155417.a.a #33	ENSGT00950000182879.b.a.b.b.d.a	ENSGT00950000182879.b.a.b.b.c	ENSGT00940000155417.a.b #33
Mus_B	ANCESTRAL SPECIES	5	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00860000135728	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00860000136250	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00860000136189	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00860000136320	ENSGT00860000135704	ENSGT00390000008678 #32	ENSGT00950000182879.b.a.a	ENSGT00940000155417.a.a #33	ENSGT00950000182879.b.a.b.a.a	ENSGT00950000182879.b.a.b.b.d.b.b	ENSGT00950000182879.b.a.b.b.d.b.a
Mouse	MODERN SPECIES	13	Leprot (ENSMUSG00000035212)	Dnajc6 (ENSMUSG00000028528)	Ak4 (ENSMUSG00000028527)	Jak1 (ENSMUSG00000028530)	Raver2 (ENSMUSG00000035275) #7	Cachd1 (ENSMUSG00000028532) #9	Ube2u (ENSMUSG00000069733) #10	Ror1 (ENSMUSG00000035305) #12	Pgm1 (ENSMUSG00000025791) #14	Efcab7 (ENSMUSG00000073791)	Itgb3bp (ENSMUSG00000028549) #15	Alg6 (ENSMUSG00000073792) #16	Foxd3 (ENSMUSG00000067261) #17	Atg4c (ENSMUSG00000028550) #19	Angptl3 (ENSMUSG00000028553) #23	Dock7 (ENSMUSG00000028556) #22	Usp1 (ENSMUSG00000028560) #24	I0C0044D17Rik (ENSMUSG00000073794)	Kank4 (ENSMUSG00000035407) #25	L1td1 (ENSMUSG00000087166) #26	Patj (ENSMUSG00000061859) #28	Tm2d1 (ENSMUSG00000028563) #29	Nfia (ENSMUSG00000028565) #30	E130114P18Rik (ENSMUSG00000048747)	Gm12695 (ENSMUSG00000078639) #32	Cyp2j5 (ENSMUSG00000052520)	Cyp2j9 (ENSMUSG00000015224) #33	Cyp2j6 (ENSMUSG00000052914)	Cyp2j8 (ENSMUSG00000082932)	Cyp2j11 (ENSMUSG00000066097)	Cyp2j7 (ENSMUSG00000081362)
Mus_C	ANCESTRAL SPECIES	2	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00860000135728	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00860000136250	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00860000136189	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00860000136320	ENSGT00860000135704	ENSGT00390000008678 #32	ENSGT00950000182879.b.a.a	ENSGT00940000155417.a.a #33	ENSGT00950000182879.b.a.b.a.a	ENSGT00950000182879.b.a.b.b.d.b.b	ENSGT00950000182879.b.a.b.b.d.b.a
spretus	MODERN SPECIES	13	Ak4 (MGP_SPRETEiJ_G0027173)	Jak1 (MGP_SPRETEiJ_G0027172)	Raver2 (MGP_SPRETEiJ_G0027171) #7	MGP_SPRETEiJ_G0027170	Cachd1 (MGP_SPRETEiJ_G0027169) #9	Ube2u (MGP_SPRETEiJ_G0027168) #10	Ror1 (MGP_SPRETEiJ_G0027167) #12	Pgm1 (MGP_SPRETEiJ_G0027166) #14	Efcab7 (MGP_SPRETEiJ_G0027165)	Itgb3bp (MGP_SPRETEiJ_G0027164) #15	Alg6 (MGP_SPRETEiJ_G0027163) #16	Foxd3 (MGP_SPRETEiJ_G0027162) #17	MGP_SPRETEiJ_G0027160	Atg4c (MGP_SPRETEiJ_G0027159) #19	Angptl3 (MGP_SPRETEiJ_G0027158) #23	Dock7 (MGP_SPRETEiJ_G0027157) #22	MGP_SPRETEiJ_G0027156 #24	I0C0044D17Rik (MGP_SPRETEiJ_G0027155)	Kank4 (MGP_SPRETEiJ_G0027154) #25	L1td1 (MGP_SPRETEiJ_G0027153) #26	Patj (MGP_SPRETEiJ_G0027152) #28	Tm2d1 (MGP_SPRETEiJ_G0027151) #29	Nfia (MGP_SPRETEiJ_G0027150) #30	MGP_SPRETEiJ_G0027149	MGP_SPRETEiJ_G0027148	Gm12695 (MGP_SPRETEiJ_G0027147) #32	Cyp2j5 (MGP_SPRETEiJ_G0027146)	Cyp2j9 (MGP_SPRETEiJ_G0027145) #33	Cyp2j6 (MGP_SPRETEiJ_G0027144)	Cyp2j8 (MGP_SPRETEiJ_G0027143)	Cyp2j11 (MGP_SPRETEiJ_G0027142)
Steppe mouse	MODERN SPECIES	2950							Pgm1 (ENSMSIG00000026111) #14	Efcab7 (ENSMSIG00000026059)	ENSMSIG00000026028 #15	Alg6 (ENSMSIG00000026002) #16	Foxd3 (ENSMSIG00000025994) #17	ENSMSIG00000025964	Atg4c (ENSMSIG00000025942) #19	ENSMSIG00000025935	Angptl3 (ENSMSIG00000025902) #23	Dock7 (ENSMSIG00000024837) #22	Usp1 (ENSMSIG00000024787) #24
Ryukyu mouse	MODERN SPECIES	13	Ak4 (MGP_CAROLIEiJ_G0026204)	Jak1 (MGP_CAROLIEiJ_G0026203)	Raver2 (MGP_CAROLIEiJ_G0026202) #7	MGP_CAROLIEiJ_G0026201	Cachd1 (MGP_CAROLIEiJ_G0026200) #9	Ube2u (MGP_CAROLIEiJ_G0026199) #10	Ror1 (MGP_CAROLIEiJ_G0026198) #12	Pgm1 (MGP_CAROLIEiJ_G0026197) #14	MGP_CAROLIEiJ_G0026196	Itgb3bp (MGP_CAROLIEiJ_G0026195) #15	Alg6 (MGP_CAROLIEiJ_G0026194) #16	Foxd3 (MGP_CAROLIEiJ_G0026193) #17	MGP_CAROLIEiJ_G0026192	Atg4c (MGP_CAROLIEiJ_G0026191) #19	Angptl3 (MGP_CAROLIEiJ_G0026190) #23	Dock7 (MGP_CAROLIEiJ_G0026189) #22	MGP_CAROLIEiJ_G0026188 #24	MGP_CAROLIEiJ_G0026187	Kank4 (MGP_CAROLIEiJ_G0026186) #25	L1td1 (MGP_CAROLIEiJ_G0026185) #26	Patj (MGP_CAROLIEiJ_G0026184) #28	Tm2d1 (MGP_CAROLIEiJ_G0026183) #29	Nfia (MGP_CAROLIEiJ_G0026182) #30	MGP_CAROLIEiJ_G0026181	MGP_CAROLIEiJ_G0026180	Gm12695 (MGP_CAROLIEiJ_G0026179) #32	Cyp2j5 (MGP_CAROLIEiJ_G0026178)	Cyp2j9 (MGP_CAROLIEiJ_G0026177) #33	MGP_CAROLIEiJ_G0026176	Cyp2j7 (MGP_CAROLIEiJ_G0026175)	Cyp2j12 (MGP_CAROLIEiJ_G0026174)
Shrew mouse	MODERN SPECIES	19	Ak4 (MGP_PahariEiJ_G0028541)	Jak1 (MGP_PahariEiJ_G0028540)	Raver2 (MGP_PahariEiJ_G0028539) #7	MGP_PahariEiJ_G0028538	Cachd1 (MGP_PahariEiJ_G0028537) #9	MGP_PahariEiJ_G0028536 #10	Ror1 (MGP_PahariEiJ_G0028535) #12	Pgm1 (MGP_PahariEiJ_G0028534) #14	MGP_PahariEiJ_G0028533	Itgb3bp (MGP_PahariEiJ_G0028532) #15	Alg6 (MGP_PahariEiJ_G0028531) #16	Foxd3 (MGP_PahariEiJ_G0028530) #17	MGP_PahariEiJ_G0028529	Atg4c (MGP_PahariEiJ_G0028528) #19	Angptl3 (MGP_PahariEiJ_G0028527) #23	Dock7 (MGP_PahariEiJ_G0028526) #22	Usp1 (MGP_PahariEiJ_G0028525) #24	MGP_PahariEiJ_G0028524	Kank4 (MGP_PahariEiJ_G0028523) #25	L1td1 (MGP_PahariEiJ_G0028522) #26	Patj (MGP_PahariEiJ_G0028521) #28	Tm2d1 (MGP_PahariEiJ_G0028520) #29	Nfia (MGP_PahariEiJ_G0028519) #30	MGP_PahariEiJ_G0028518	MGP_PahariEiJ_G0028517	Gm12695 (MGP_PahariEiJ_G0028516) #32	Cyp2j5 (MGP_PahariEiJ_G0028515)	Cyp2j9 (MGP_PahariEiJ_G0028514) #33	Cyp2j6 (MGP_PahariEiJ_G0028513)	Cyp2j7 (MGP_PahariEiJ_G0028512)	Cyp2j12 (MGP_PahariEiJ_G0028511)
Rat	MODERN SPECIES	15	Dnajc6 (ENSRNOG00000052887)	Ak4 (ENSRNOG00000045738)	Jak1 (ENSRNOG00000011157)	Raver2 (ENSRNOG00000023812) #7	Cachd1 (ENSRNOG00000010514) #9	Ube2u (ENSRNOG00000023895) #10	Ror1 (ENSRNOG00000029449) #12	Pgm1 (ENSRNOG00000009889) #14	Efcab7 (ENSRNOG00000009782)	Itgb3bp (ENSRNOG00000009116) #15	Alg6 (ENSRNOG00000009045) #16	Foxd3 (ENSRNOG00000066522) #17	ENSRNOG00000064901	Atg4c (ENSRNOG00000008767) #19	Angptl3 (ENSRNOG00000008638) #23	Dock7 (ENSRNOG00000008298) #22	Usp1 (ENSRNOG00000007890) #24	Kank4 (ENSRNOG00000007779) #25	L1td1 (ENSRNOG00000050670) #26	Patj (ENSRNOG00000007551) #28	Tm2d1 (ENSRNOG00000007527) #29	AABR07049329.1 (ENSRNOG00000030107)	Nfia (ENSRNOG00000006966) #30	ENSRNOG00000065127	C5h1orf87 (ENSRNOG00000026169) #32	Cyp2j3 (ENSRNOG00000031004) #33	Cyp2j16 (ENSRNOG00000030466)	Cyp2j10 (ENSRNOG00000042224)	ENSRNOG00000070878	Hook1 (ENSRNOG00000026226) #34	AABR07049299.1 (ENSRNOG00000026234)
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1373															ENSNGAG00000015882	ENSNGAG00000020625 #22	Usp1 (ENSNGAG00000019933) #24
Upper Galilee mountains blind mole rat	MODERN SPECIES	746	Dnajc6 (ENSNGAG00000005987)	Ak4 (ENSNGAG00000015116)	Jak1 (ENSNGAG00000008128)	Raver2 (ENSNGAG00000000905) #7	Cachd1 (ENSNGAG00000018544) #9	ENSNGAG00000014807	Ror1 (ENSNGAG00000016109) #12	Pgm1 (ENSNGAG00000001015) #14	Efcab7 (ENSNGAG00000004878)	Itgb3bp (ENSNGAG00000015057) #15	ENSNGAG00000018384	Alg6 (ENSNGAG00000010907) #16	ENSNGAG00000012776	Atg4c (ENSNGAG00000015045) #19	ENSNGAG00000015494	ENSNGAG00000018494 #22	Angptl3 (ENSNGAG00000000389) #23
Rodentia_A	ANCESTRAL SPECIES		ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027	ENSGT00940000158038
Marmotini	ANCESTRAL SPECIES		ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00390000009895.i.b.b	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Marmotini_b	ANCESTRAL SPECIES	206	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25
Squirrel	MODERN SPECIES	292	LEPROT (ENSSTOG00000021572)	DNAJC6 (ENSSTOG00000011000)	ENSSTOG00000023008	JAK1 (ENSSTOG00000012422)	RAVER2 (ENSSTOG00000009844) #7	CACHD1 (ENSSTOG00000009821) #9	UBE2U (ENSSTOG00000032996) #10	ROR1 (ENSSTOG00000022807) #12	PGM1 (ENSSTOG00000007561) #14	EFCAB7 (ENSSTOG00000013534)	ITGB3BP (ENSSTOG00000030642) #15	ALG6 (ENSSTOG00000024670) #16	FOXD3 (ENSSTOG00000023664) #17	ATG4C (ENSSTOG00000012443) #19	ANGPTL3 (ENSSTOG00000005071) #23	DOCK7 (ENSSTOG00000004984) #22	USP1 (ENSSTOG00000004952) #24	ENSSTOG00000029567
Arctic ground squirrel	MODERN SPECIES	393							ENSUPAG00010016215 #10	ROR1 (ENSUPAG00010016191) #12	PGM1 (ENSUPAG00010016171) #14	EFCAB7 (ENSUPAG00010016164)	ITGB3BP (ENSUPAG00010016157) #15	ALG6 (ENSUPAG00010016149) #16	FOXD3 (ENSUPAG00010016144) #17	ATG4C (ENSUPAG00010016097) #19	ANGPTL3 (ENSUPAG00010016086) #23	DOCK7 (ENSUPAG00010015703) #22	USP1 (ENSUPAG00010015671) #24	ENSUPAG00010015659 #25
Alpin marmot	MODERN SPECIES	15	LEPR (ENSMMMG00000013253)	LEPROT (ENSMMMG00000013361)	DNAJC6 (ENSMMMG00000013392)	ENSMMMG00000013457	ENSMMMG00000013460	JAK1 (ENSMMMG00000013495)	RAVER2 (ENSMMMG00000013548) #7	CACHD1 (ENSMMMG00000013619) #9	UBE2U (ENSMMMG00000013711) #10	ROR1 (ENSMMMG00000013738) #12	PGM1 (ENSMMMG00000013759) #14	EFCAB7 (ENSMMMG00000013790)	ITGB3BP (ENSMMMG00000013816) #15	ALG6 (ENSMMMG00000013823) #16	ATG4C (ENSMMMG00000013865) #19	DOCK7 (ENSMMMG00000013902) #22	ANGPTL3 (ENSMMMG00000014378) #23	USP1 (ENSMMMG00000014385) #24	PATJ (ENSMMMG00000014420) #28	ENSMMMG00000014624	ENSMMMG00000014629	TM2D1 (ENSMMMG00000014648) #29	NFIA (ENSMMMG00000014681) #30	ENSMMMG00000014756	ENSMMMG00000014775 #32	CYP2J2 (ENSMMMG00000014784) #33	HOOK1 (ENSMMMG00000014799) #34	FGGY (ENSMMMG00000014858) #35	JUN (ENSMMMG00000014900) #36	MYSM1 (ENSMMMG00000014904) #37	TACSTD2 (ENSMMMG00000014938)
Eurasian red squirrel	MODERN SPECIES		ENSSVLG00005008279 #10	ROR1 (ENSSVLG00005008154) #12	ENSSVLG00005008103 #14	ENSSVLG00005008005 #14	EFCAB7 (ENSSVLG00005007917)	ITGB3BP (ENSSVLG00005007854) #15	ALG6 (ENSSVLG00005007804) #16	ENSSVLG00005007774	FOXD3 (ENSSVLG00005007758) #17	ENSSVLG00005007744	ATG4C (ENSSVLG00005007673) #19	ENSSVLG00005007657	ENSSVLG00005007631	ENSSVLG00005007602	ANGPTL3 (ENSSVLG00005007525) #23	DOCK7 (ENSSVLG00005005302) #22	USP1 (ENSSVLG00005004642) #24	KANK4 (ENSSVLG00005004588) #25	L1TD1 (ENSSVLG00005004562) #26	ENSSVLG00005004503	PATJ (ENSSVLG00005004098) #28	TM2D1 (ENSSVLG00005003968) #29	NFIA (ENSSVLG00005003823) #30	C1orf87 (ENSSVLG00005003680) #32	CYP2J2 (ENSSVLG00005003643) #33	HOOK1 (ENSSVLG00005003597) #34	FGGY (ENSSVLG00005003528) #35	JUN (ENSSVLG00005003485) #36	ENSSVLG00005003468	ENSSVLG00005003426 #37	ENSSVLG00005003403 #37
Hystricomorpha	ANCESTRAL SPECIES	44	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30
Naked mole-rat female	MODERN SPECIES	10	JAK1 (ENSHGLG00000018566)	RAVER2 (ENSHGLG00000018409) #7	ENSHGLG00000020728	CACHD1 (ENSHGLG00000018425) #9	ENSHGLG00000040093	ENSHGLG00000050985	ROR1 (ENSHGLG00000017565) #12	ENSHGLG00000042916	PGM1 (ENSHGLG00000017576) #14	EFCAB7 (ENSHGLG00000017587)	ENSHGLG00000017596 #15	ALG6 (ENSHGLG00000018273) #16	FOXD3 (ENSHGLG00000043312) #17	ENSHGLG00000042394	ATG4C (ENSHGLG00000046412) #19	DOCK7 (ENSHGLG00000018341) #22	ANGPTL3 (ENSHGLG00000018269) #23	ENSHGLG00000013193 #24	ENSHGLG00000035291	PATJ (ENSHGLG00000014013) #28	TM2D1 (ENSHGLG00000041262) #29	NFIA (ENSHGLG00000017859) #30
Hystricomorpha_a	ANCESTRAL SPECIES	14	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30
Guinea pig	MODERN SPECIES	2	PDE4B (ENSCPOG00000011698)	LEPR (ENSCPOG00000015030)	LEPROT (ENSCPOG00000033712)	DNAJC6 (ENSCPOG00000008733)	ENSCPOG00000037978	JAK1 (ENSCPOG00000005991)	RAVER2 (ENSCPOG00000005986) #7	CACHD1 (ENSCPOG00000011700) #9	ENSCPOG00000010304 #10	ROR1 (ENSCPOG00000034531) #12	PGM1 (ENSCPOG00000022261) #14	EFCAB7 (ENSCPOG00000015458)	ITGB3BP (ENSCPOG00000034564) #15	ALG6 (ENSCPOG00000005163) #16	ATG4C (ENSCPOG00000001607) #19	DOCK7 (ENSCPOG00000006170) #22	ENSCPOG00000027140	ANGPTL3 (ENSCPOG00000006192) #23	USP1 (ENSCPOG00000010416) #24	KANK4 (ENSCPOG00000039764) #25	PATJ (ENSCPOG00000024891) #28	TM2D1 (ENSCPOG00000012287) #29	NFIA (ENSCPOG00000010091) #30	ENSCPOG00000036581	STOM (ENSCPOG00000034024)	GSN (ENSCPOG00000008387)	RAB14 (ENSCPOG00000036631)	CNTRL (ENSCPOG00000006668)	C5 (ENSCPOG00000002250)	TRAF1 (ENSCPOG00000037365)	PHF19 (ENSCPOG00000002245)
Hystricomorpha_b	ANCESTRAL SPECIES	6	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30
Long-tailed chinchilla	MODERN SPECIES	130	SGIP1 (ENSCLAG00000005269)	PDE4B (ENSCLAG00000006409)	LEPR (ENSCLAG00000016236)	LEPROT (ENSCLAG00000008136)	DNAJC6 (ENSCLAG00000008413)	ENSCLAG00000005491	JAK1 (ENSCLAG00000006227)	RAVER2 (ENSCLAG00000006590) #7	CACHD1 (ENSCLAG00000007901) #9	ROR1 (ENSCLAG00000010126) #12	PGM1 (ENSCLAG00000008744) #14	EFCAB7 (ENSCLAG00000009320)	ITGB3BP (ENSCLAG00000004361) #15	ENSCLAG00000005099 #16	ATG4C (ENSCLAG00000005419) #19	DOCK7 (ENSCLAG00000006534) #22	ANGPTL3 (ENSCLAG00000011792) #23	USP1 (ENSCLAG00000009389) #24	KANK4 (ENSCLAG00000004374) #25	ENSCLAG00000005428 #26	PATJ (ENSCLAG00000005694) #28	TM2D1 (ENSCLAG00000005321) #29	NFIA (ENSCLAG00000005937) #30	ENSCLAG00000005718
Degu	MODERN SPECIES	98	JAK1 (ENSODEG00000004472)	RAVER2 (ENSODEG00000005253) #7	CACHD1 (ENSODEG00000004991) #9	ENSODEG00000004610 #10	ROR1 (ENSODEG00000004832) #12	ENSODEG00000005033	PGM1 (ENSODEG00000005752) #14	ENSODEG00000005465	ENSODEG00000019103	ITGB3BP (ENSODEG00000005479) #15	ENSODEG00000005048 #16	ATG4C (ENSODEG00000005462) #19	ENSODEG00000019085	ANGPTL3 (ENSODEG00000005471) #23	ENSODEG00000005344	DOCK7 (ENSODEG00000004836) #22	ENSODEG00000007065 #24	ENSODEG00000006862 #25	PATJ (ENSODEG00000004922) #28	TM2D1 (ENSODEG00000004635) #29	NFIA (ENSODEG00000005024) #30	ENSODEG00000004370	ENSODEG00000004158
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818.t #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT00990000211939	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818.t #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00940000172662	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT00990000211939	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d
Carnivora	ANCESTRAL SPECIES	1	ENSGT00940000154568	ENSGT01030000238341	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00390000015224.c.b.b.a.b.b.a	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818.t #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00940000172662	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT00990000211939	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d
Felidae	ANCESTRAL SPECIES	10	ENSGT00940000158755	ENSGT00940000154568	ENSGT01030000238341	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00390000015224.c.b.b.a.b.b.a	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818.t.f #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Panthera	ANCESTRAL SPECIES	4	ENSGT00940000158755	ENSGT00940000154568	ENSGT01030000238341	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00390000015224.c.b.b.a.b.b.a	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818.t.f #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Tiger	MODERN SPECIES	311	PDE4B (ENSPTIG00000007272)	LEPR (ENSPTIG00000015515)	LEPROT (ENSPTIG00000017653)	DNAJC6 (ENSPTIG00000018599)	ENSPTIG00000021852	JAK1 (ENSPTIG00000003605)	RAVER2 (ENSPTIG00000009389) #7	CACHD1 (ENSPTIG00000012920) #9	UBE2U (ENSPTIG00000014692) #10	ROR1 (ENSPTIG00000016351) #12	PGM1 (ENSPTIG00000018253) #14	EFCAB7 (ENSPTIG00000020117)	ITGB3BP (ENSPTIG00000000768) #15	ALG6 (ENSPTIG00000002736) #16	ATG4C (ENSPTIG00000010987) #19	DOCK7 (ENSPTIG00000011989) #22	ANGPTL3 (ENSPTIG00000004150) #23	USP1 (ENSPTIG00000006642) #24	KANK4 (ENSPTIG00000007617) #25	ENSPTIG00000016463 #28	ENSPTIG00000019558 #28	TM2D1 (ENSPTIG00000021958) #29	NFIA (ENSPTIG00000022054) #30	C1orf87 (ENSPTIG00000004810) #32	CYP2J2 (ENSPTIG00000007533) #33	HOOK1 (ENSPTIG00000008464) #34	FGGY (ENSPTIG00000010783) #35	MYSM1 (ENSPTIG00000013445) #37	OMA1 (ENSPTIG00000014427)	DAB1 (ENSPTIG00000015668)	C8B (ENSPTIG00000021329)
Panthera_a	ANCESTRAL SPECIES	11	ENSGT00940000158755	ENSGT00940000154568	ENSGT01030000238341	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00390000015224.c.b.b.a.b.b.a	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818.t.f #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
lion	MODERN SPECIES	8	DNAJC6 (ENSPLOG00000006842)	ENSPLOG00000007140	ENSPLOG00000007171	JAK1 (ENSPLOG00000007282)	RAVER2 (ENSPLOG00000007347) #7	ENSPLOG00000007407	CACHD1 (ENSPLOG00000007467) #9	ENSPLOG00000007699 #10	ROR1 (ENSPLOG00000007754) #12	PGM1 (ENSPLOG00000007875) #14	EFCAB7 (ENSPLOG00000007985)	ITGB3BP (ENSPLOG00000008062) #15	ALG6 (ENSPLOG00000008139) #16	FOXD3 (ENSPLOG00000008178) #17	ATG4C (ENSPLOG00000008193) #19	DOCK7 (ENSPLOG00000008689) #22	ANGPTL3 (ENSPLOG00000010232) #23	USP1 (ENSPLOG00000010281) #24	ENSPLOG00000010404 #25	L1TD1 (ENSPLOG00000010511) #26	PATJ (ENSPLOG00000010662) #28	TM2D1 (ENSPLOG00000010892) #29	NFIA (ENSPLOG00000011140) #30	C1orf87 (ENSPLOG00000011637) #32	CYP2J2 (ENSPLOG00000011809) #33	HOOK1 (ENSPLOG00000011920) #34	FGGY (ENSPLOG00000012145) #35	JUN (ENSPLOG00000012226) #36	MYSM1 (ENSPLOG00000012253) #37	TACSTD2 (ENSPLOG00000012302)	OMA1 (ENSPLOG00000012324)
leopard	MODERN SPECIES	16	ENSPPRG00000000962	ENSPPRG00000000367	JAK1 (ENSPPRG00000022662)	RAVER2 (ENSPPRG00000023350) #7	CACHD1 (ENSPPRG00000023686) #9	ENSPPRG00000023862	UBE2U (ENSPPRG00000021247) #10	ROR1 (ENSPPRG00000017823) #12	ENSPPRG00000013850	PGM1 (ENSPPRG00000013727) #14	EFCAB7 (ENSPPRG00000012738)	ITGB3BP (ENSPPRG00000012409) #15	ALG6 (ENSPPRG00000011811) #16	FOXD3 (ENSPPRG00000014919) #17	ATG4C (ENSPPRG00000009565) #19	DOCK7 (ENSPPRG00000007918) #22	ANGPTL3 (ENSPPRG00000013921) #23	USP1 (ENSPPRG00000013661) #24	KANK4 (ENSPPRG00000013316) #25	L1TD1 (ENSPPRG00000011113) #26	ENSPPRG00000011020 #28	ENSPPRG00000009261 #28	TM2D1 (ENSPPRG00000005809) #29	NFIA (ENSPPRG00000004851) #30	C1orf87 (ENSPPRG00000001614) #32	CYP2J2 (ENSPPRG00000000574) #33	HOOK1 (ENSPPRG00000000392) #34	FGGY (ENSPPRG00000022697) #35	JUN (ENSPPRG00000020728) #36	MYSM1 (ENSPPRG00000019169) #37	TACSTD2 (ENSPPRG00000020682)
Cat	MODERN SPECIES	239	AK4 (ENSFCAG00000033540)	JAK1 (ENSFCAG00000001953)	RAVER2 (ENSFCAG00000022781) #7	CACHD1 (ENSFCAG00000010902) #9	UBE2U (ENSFCAG00000024149) #10	ROR1 (ENSFCAG00000013779) #12	EFCAB7 (ENSFCAG00000024580) #14	ITGB3BP (ENSFCAG00000025609) #15	ALG6 (ENSFCAG00000027407) #16	ENSFCAG00000025108	FOXD3 (ENSFCAG00000045701) #17	ENSFCAG00000043193	ENSFCAG00000052912	ATG4C (ENSFCAG00000027083) #19	ANGPTL3 (ENSFCAG00000011284) #23	DOCK7 (ENSFCAG00000022720) #22	USP1 (ENSFCAG00000023269) #24	KANK4 (ENSFCAG00000000371) #25	L1TD1 (ENSFCAG00000042658) #26	PATJ (ENSFCAG00000005299) #28	TM2D1 (ENSFCAG00000000772) #29	NFIA (ENSFCAG00000005997) #30	C1orf87 (ENSFCAG00000011149) #32	CYP2J2 (ENSFCAG00000011145) #33	HOOK1 (ENSFCAG00000018198) #34	FGGY (ENSFCAG00000030121) #35	JUN (ENSFCAG00000024972) #36	MYSM1 (ENSFCAG00000026572) #37	TACSTD2 (ENSFCAG00000002921)	OMA1 (ENSFCAG00000001377)	DAB1 (ENSFCAG00000003901)
Caniformia	ANCESTRAL SPECIES	2	ENSGT00940000154568	ENSGT01030000238341	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00390000015224.c.b.b.a.b.b.a	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818.t #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00940000172662	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT00990000211939	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d
Canidae	ANCESTRAL SPECIES	11	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00390000007084.c.a.e.a	ENSGT00940000156679.f	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818.t.d #26	ENSGT01100000266959	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT00990000211939	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37
Red fox	MODERN SPECIES	62								PGM1 (ENSVVUG00000016288) #14	EFCAB7 (ENSVVUG00000016297)	ITGB3BP (ENSVVUG00000016316) #15	ALG6 (ENSVVUG00000016343) #16	ENSVVUG00000016380	ATG4C (ENSVVUG00000016398) #19	PAM16 (ENSVVUG00000016407)	ENSVVUG00000016411	DOCK7 (ENSVVUG00000016969) #22	ANGPTL3 (ENSVVUG00000026291) #23	USP1 (ENSVVUG00000026295) #24	KANK4 (ENSVVUG00000026306) #25	ENSVVUG00000026311	ENSVVUG00000026313	ENSVVUG00000026322 #28	ENSVVUG00000026408	ENSVVUG00000026417 #28	TM2D1 (ENSVVUG00000026483) #29	NFIA (ENSVVUG00000026485) #30	C1orf87 (ENSVVUG00000026487) #32	CYP2J2 (ENSVVUG00000026490) #33	HOOK1 (ENSVVUG00000026494) #34	ENSVVUG00000026512	FGGY (ENSVVUG00000026516) #35
Canis_lupus	ANCESTRAL SPECIES	5	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00390000007084.c.a.e.a	ENSGT00940000156679.f	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063666.b.y.a.b.b	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818.t.d #26	ENSGT00940000157820.a.b	ENSGT00940000154679.dc	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT00990000211939	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37
Dingo	MODERN SPECIES	373	CACHD1 (ENSCAFG00020018033) #9	ENSCAFG00020018007	ENSCAFG00020018002	UBE2U (ENSCAFG00020017979) #10	ROR1 (ENSCAFG00020017975) #12	ENSCAFG00020017973 #12	PGM1 (ENSCAFG00020017963) #14	EFCAB7 (ENSCAFG00020017957)	ITGB3BP (ENSCAFG00020017944) #15	ALG6 (ENSCAFG00020017936) #16	FOXD3 (ENSCAFG00020017935) #17	ENSCAFG00020017930	ENSCAFG00020017929	ATG4C (ENSCAFG00020017922) #19	ANGPTL3 (ENSCAFG00020017900) #23	DOCK7 (ENSCAFG00020013336) #22	USP1 (ENSCAFG00020012966) #24	ENSCAFG00020012959 #25	ENSCAFG00020012955 #25	L1TD1 (ENSCAFG00020012951) #26	ENSCAFG00020012949	ENSCAFG00020012948	ENSCAFG00020012901 #28	ENSCAFG00020012823 #28	TM2D1 (ENSCAFG00020012812) #29	ENSCAFG00020012805 #30	ENSCAFG00020012789 #30	ENSCAFG00020012779 #32	CYP2J2 (ENSCAFG00020012777) #33	HOOK1 (ENSCAFG00020012744) #34	ENSCAFG00020012733
Dog	MODERN SPECIES	33	CACHD1 (ENSCAFG00845004709) #9	ENSCAFG00845004792	ENSCAFG00845004800	ENSCAFG00845004810	UBE2U (ENSCAFG00845004817) #10	ROR1 (ENSCAFG00845004850) #12	ENSCAFG00845004877	PGM1 (ENSCAFG00845004898) #14	EFCAB7 (ENSCAFG00845004924)	ITGB3BP (ENSCAFG00845004941) #15	ALG6 (ENSCAFG00845004972) #16	FOXD3 (ENSCAFG00845004983) #17	ENSCAFG00845004987	ENSCAFG00845004990	ATG4C (ENSCAFG00845005004) #19	DOCK7 (ENSCAFG00845005064) #22	ANGPTL3 (ENSCAFG00845005144) #23	USP1 (ENSCAFG00845005152) #24	KANK4 (ENSCAFG00845005174) #25	L1TD1 (ENSCAFG00845005257) #26	ENSCAFG00845005266	ENSCAFG00845005273	PATJ (ENSCAFG00845005350) #28	TM2D1 (ENSCAFG00845005499) #29	NFIA (ENSCAFG00845005661) #30	C5H1orf87 (ENSCAFG00845005904) #32	CYP2J2 (ENSCAFG00845005961) #33	HOOK1 (ENSCAFG00845006034) #34	FGGY (ENSCAFG00845006253) #35	ENSCAFG00845006485	ENSCAFG00845006512
Caniformia_b	ANCESTRAL SPECIES	1	ENSGT00940000154568	ENSGT01030000238341	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00390000015224.c.b.b.a.b.b.a	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818.t #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00940000172662	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Ursidae	ANCESTRAL SPECIES		ENSGT00940000154568	ENSGT01030000238341	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00390000015224.c.b.b.a.b.b.a	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818.t.b #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00940000172662	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Giant Panda	MODERN SPECIES	11	AK4 (ENSAMEG00000030587)	ENSAMEG00000020190	JAK1 (ENSAMEG00000014980)	RAVER2 (ENSAMEG00000015178) #7	CACHD1 (ENSAMEG00000015187) #9	ENSAMEG00000015106 #10	ROR1 (ENSAMEG00000026239) #12	PGM1 (ENSAMEG00000015053) #14	EFCAB7 (ENSAMEG00000015027)	ITGB3BP (ENSAMEG00000025500) #15	ALG6 (ENSAMEG00000015024) #16	FOXD3 (ENSAMEG00000025968) #17	ENSAMEG00000015017	ATG4C (ENSAMEG00000014990) #19	ANGPTL3 (ENSAMEG00000014967) #23	DOCK7 (ENSAMEG00000014852) #22	USP1 (ENSAMEG00000014832) #24	KANK4 (ENSAMEG00000014824) #25	L1TD1 (ENSAMEG00000014821) #26	PATJ (ENSAMEG00000011620) #28	TM2D1 (ENSAMEG00000011705) #29	NFIA (ENSAMEG00000011711) #30	ENSAMEG00000000383 #32	CYP2J2 (ENSAMEG00000000342) #33	HOOK1 (ENSAMEG00000000285) #34	FGGY (ENSAMEG00000000277) #35	JUN (ENSAMEG00000029207) #36	MYSM1 (ENSAMEG00000000263) #37	TACSTD2 (ENSAMEG00000024392)	OMA1 (ENSAMEG00000000254)	DAB1 (ENSAMEG00000009524)
Ursus	ANCESTRAL SPECIES	18	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00390000015224.c.b.b.a.b.b.a	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818.t.b #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00940000172662	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34
Polar bear	MODERN SPECIES	170	LEPR (ENSUMAG00000007490)	LEPROT (ENSUMAG00000008414)	DNAJC6 (ENSUMAG00000008423)	ENSUMAG00000008451	JAK1 (ENSUMAG00000008476)	RAVER2 (ENSUMAG00000008489) #7	CACHD1 (ENSUMAG00000008533) #9	UBE2U (ENSUMAG00000008687) #10	ROR1 (ENSUMAG00000008696) #12	ENSUMAG00000008731	PGM1 (ENSUMAG00000008746) #14	EFCAB7 (ENSUMAG00000008804)	ITGB3BP (ENSUMAG00000008812) #15	ALG6 (ENSUMAG00000008819) #16	ATG4C (ENSUMAG00000008849) #19	DOCK7 (ENSUMAG00000009379) #22	ANGPTL3 (ENSUMAG00000014860) #23	USP1 (ENSUMAG00000014896) #24	KANK4 (ENSUMAG00000014917) #25	L1TD1 (ENSUMAG00000014924) #26	ENSUMAG00000014936 #28	ENSUMAG00000015022 #28	TM2D1 (ENSUMAG00000015321) #29	ENSUMAG00000015327 #30	ENSUMAG00000015336 #30	ENSUMAG00000015348	ENSUMAG00000015350 #32	CYP2J2 (ENSUMAG00000015360) #33	HOOK1 (ENSUMAG00000015366) #34	ENSUMAG00000015402	OR6C75 (ENSUMAG00000015414)
American black bear	DUPLICATION
American black bear	MODERN SPECIES	6382																ENSUAMG00000018903 #22
American black bear	MODERN SPECIES	1445															ANGPTL3 (ENSUAMG00000022391) #23	DOCK7 (ENSUAMG00000020665) #22	USP1 (ENSUAMG00000020663) #24	KANK4 (ENSUAMG00000020662) #25
Mustelinae	ANCESTRAL SPECIES	39	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00390000006051.a.a	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT01100000264156.a	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818.t #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027	ENSGT00940000158038	ENSGT00940000160247
American mink	MODERN SPECIES	57	ENSNVIG00000010479	JAK1 (ENSNVIG00000010400)	RAVER2 (ENSNVIG00000010354) #7	CACHD1 (ENSNVIG00000010295) #9	ENSNVIG00000010284	UBE2U (ENSNVIG00000010241) #10	ROR1 (ENSNVIG00000010206) #12	ENSNVIG00000010195	PGM1 (ENSNVIG00000010153) #14	EFCAB7 (ENSNVIG00000010114)	ITGB3BP (ENSNVIG00000010096) #15	ALG6 (ENSNVIG00000010061) #16	ENSNVIG00000010049	ATG4C (ENSNVIG00000010028) #19	ANGPTL3 (ENSNVIG00000010008) #23	DOCK7 (ENSNVIG00000009659) #22	USP1 (ENSNVIG00000009582) #24	KANK4 (ENSNVIG00000009550) #25	L1TD1 (ENSNVIG00000009541) #26	PATJ (ENSNVIG00000009197) #28	TM2D1 (ENSNVIG00000009157) #29	NFIA (ENSNVIG00000009117) #30
Ferret	MODERN SPECIES	192									PGM1 (ENSMPUG00000008105) #14	EFCAB7 (ENSMPUG00000008091)	ITGB3BP (ENSMPUG00000008084) #15	ALG6 (ENSMPUG00000008069) #16	ENSMPUG00000008058	ATG4C (ENSMPUG00000007984) #19	ANGPTL3 (ENSMPUG00000007973) #23	DOCK7 (ENSMPUG00000007740) #22	USP1 (ENSMPUG00000007732) #24	KANK4 (ENSMPUG00000007723) #25	PATJ (ENSMPUG00000007545) #28	TM2D1 (ENSMPUG00000007538) #29	NFIA (ENSMPUG00000007524) #30	ENSMPUG00000007512	CYP2J2 (ENSMPUG00000007501) #33	HOOK1 (ENSMPUG00000007486) #34	FGGY (ENSMPUG00000007478) #35	JUN (ENSMPUG00000020182) #36	MYSM1 (ENSMPUG00000007462) #37	TACSTD2 (ENSMPUG00000020181)	OMA1 (ENSMPUG00000007418)	DAB1 (ENSMPUG00000007313)	C8B (ENSMPUG00000007296)
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818.t #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00940000172662	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Equus	ANCESTRAL SPECIES	3	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818.t.h #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00940000172662	ENSGT00390000008678 #32
Donkey	MODERN SPECIES	7	ENSEASG00005008138	JAK1 (ENSEASG00005008150)	RAVER2 (ENSEASG00005008158) #7	CACHD1 (ENSEASG00005008161) #9	ENSEASG00005008165	ENSEASG00005020139	ENSEASG00005008168 #10	ROR1 (ENSEASG00005008170) #12	PGM1 (ENSEASG00005008175) #14	EFCAB7 (ENSEASG00005008181)	ITGB3BP (ENSEASG00005008189) #15	ALG6 (ENSEASG00005008197) #16	ENSEASG00005034981 #17	ENSEASG00005027466	ATG4C (ENSEASG00005008203) #19	DOCK7 (ENSEASG00005008261) #22	ANGPTL3 (ENSEASG00005008790) #23	ENSEASG00005008801	USP1 (ENSEASG00005008805) #24	KANK4 (ENSEASG00005008809) #25	L1TD1 (ENSEASG00005008811) #26	PATJ (ENSEASG00005008849) #28	ENSEASG00005008936 #29	NFIA (ENSEASG00005008945) #30	ENSEASG00005027546	ENSEASG00005008953 #32
Horse	MODERN SPECIES	26	LEPR (ENSECAG00000013863)	LEPROT (ENSECAG00000016346)	DNAJC6 (ENSECAG00000016430)	AK4 (ENSECAG00000018332)	JAK1 (ENSECAG00000018673)	RAVER2 (ENSECAG00000022014) #7	CACHD1 (ENSECAG00000022152) #9	UBE2U (ENSECAG00000023839) #10	ROR1 (ENSECAG00000024107) #12	PGM1 (ENSECAG00000024262) #14	EFCAB7 (ENSECAG00000028115)	ITGB3BP (ENSECAG00000024911) #15	ALG6 (ENSECAG00000024941) #16	ENSECAG00000048116	ATG4C (ENSECAG00000000823) #19	DOCK7 (ENSECAG00000009061) #22	ANGPTL3 (ENSECAG00000008457) #23	ENSECAG00000006699	USP1 (ENSECAG00000011151) #24	KANK4 (ENSECAG00000012602) #25	L1TD1 (ENSECAG00000013248) #26	PATJ (ENSECAG00000013266) #28	TM2D1 (ENSECAG00000015035) #29	NFIA (ENSECAG00000015574) #30	ENSECAG00000053077	C5H1orf87 (ENSECAG00000026838) #32
Chiroptera	ANCESTRAL SPECIES		ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027	ENSGT00940000158038	ENSGT00940000160247
Megabat	MODERN SPECIES	1741															ANGPTL3 (ENSPVAG00000013930) #23	DOCK7 (ENSPVAG00000013924) #22	USP1 (ENSPVAG00000013923) #24
Microchiroptera	ANCESTRAL SPECIES	1	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027	ENSGT00940000158038	ENSGT00940000160247
Greater horseshoe bat	MODERN SPECIES	27	DNAJC6 (ENSRFEG00010003981)	ENSRFEG00010003929	JAK1 (ENSRFEG00010003864)	RAVER2 (ENSRFEG00010003831) #7	CACHD1 (ENSRFEG00010003774) #9	ENSRFEG00010003748 #10	ROR1 (ENSRFEG00010003713) #12	PGM1 (ENSRFEG00010003661) #14	EFCAB7 (ENSRFEG00010003607)	ITGB3BP (ENSRFEG00010003573) #15	ALG6 (ENSRFEG00010003519) #16	ENSRFEG00010003488	FOXD3 (ENSRFEG00010003478) #17	ATG4C (ENSRFEG00010003453) #19	ANGPTL3 (ENSRFEG00010003412) #23	DOCK7 (ENSRFEG00010003268) #22	USP1 (ENSRFEG00010003131) #24	KANK4 (ENSRFEG00010003055) #25	PATJ (ENSRFEG00010002868) #28	TM2D1 (ENSRFEG00010002648) #29	ENSRFEG00010002611	NFIA (ENSRFEG00010002359) #30	ENSRFEG00010002162	ENSRFEG00010002144 #32	ENSRFEG00010002128 #33	ENSRFEG00010001873 #33	ENSRFEG00010001785 #33	ENSRFEG00010001627 #33	HOOK1 (ENSRFEG00010001515) #34	FGGY (ENSRFEG00010001410) #35	ENSRFEG00010001367
Microbat	MODERN SPECIES	1000	JAK1 (ENSMLUG00000007723)	RAVER2 (ENSMLUG00000007699) #7	ENSMLUG00000028943	CACHD1 (ENSMLUG00000007663) #9	ENSMLUG00000010579 #10	ROR1 (ENSMLUG00000010560) #12	PGM1 (ENSMLUG00000012744) #14	ENSMLUG00000023512	EFCAB7 (ENSMLUG00000011542)	ITGB3BP (ENSMLUG00000004057) #15	ALG6 (ENSMLUG00000004045) #16	FOXD3 (ENSMLUG00000006018) #17	ENSMLUG00000028331	ATG4C (ENSMLUG00000029040) #19	ANGPTL3 (ENSMLUG00000015497) #23	DOCK7 (ENSMLUG00000012444) #22	USP1 (ENSMLUG00000012439) #24	KANK4 (ENSMLUG00000006932) #25	PATJ (ENSMLUG00000006861) #28	TM2D1 (ENSMLUG00000028750) #29	ENSMLUG00000008375 #30	ENSMLUG00000024011 #30
Artiodactyla	ANCESTRAL SPECIES		ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000164101.b	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417.u.a #33	ENSGT00940000159251 #34	ENSGT00990000211939	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000164101.b	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417.u.a #33	ENSGT00940000159251 #34	ENSGT00990000211939	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d
Camelidae	ANCESTRAL SPECIES	11	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417.v.c.b #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027	ENSGT00940000158038	ENSGT00940000160247
Arabian camel	MODERN SPECIES	4	DNAJC6 (ENSCDRG00005004711)	ENSCDRG00005004652	JAK1 (ENSCDRG00005004601)	ENSCDRG00005004583	RAVER2 (ENSCDRG00005004547) #7	CACHD1 (ENSCDRG00005004143) #9	UBE2U (ENSCDRG00005003953) #10	ROR1 (ENSCDRG00005003848) #12	PGM1 (ENSCDRG00005003722) #14	EFCAB7 (ENSCDRG00005003668)	ITGB3BP (ENSCDRG00005003577) #15	ALG6 (ENSCDRG00005003516) #16	FOXD3 (ENSCDRG00005003471) #17	ATG4C (ENSCDRG00005003431) #19	ANGPTL3 (ENSCDRG00005017333) #23	DOCK7 (ENSCDRG00005016867) #22	USP1 (ENSCDRG00005016803) #24	KANK4 (ENSCDRG00005016599) #25	PATJ (ENSCDRG00005015902) #28	TM2D1 (ENSCDRG00005015765) #29	NFIA (ENSCDRG00005015494) #30	C1orf87 (ENSCDRG00005015266) #32	ENSCDRG00005015188 #33	ENSCDRG00005014670 #33	HOOK1 (ENSCDRG00005014570) #34	FGGY (ENSCDRG00005014344) #35	JUN (ENSCDRG00005014307) #36	MYSM1 (ENSCDRG00005014258) #37	TACSTD2 (ENSCDRG00005014236)	OMA1 (ENSCDRG00005014146)	DAB1 (ENSCDRG00005013804)
Alpaca	MODERN SPECIES	1471														ATG4C (ENSVPAG00000010777) #19	ANGPTL3 (ENSVPAG00000010776) #23	DOCK7 (ENSVPAG00000010774) #22	USP1 (ENSVPAG00000010773) #24
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000164101.b	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417.u.a #33	ENSGT00940000159251 #34	ENSGT00990000211939	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d
Pecora	ANCESTRAL SPECIES	2	ENSGT00730000111209	ENSGT00390000006503.a.j	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336.c.a #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000164101.b	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417.u.a.a.a #33	ENSGT00940000155417.u.a.b #33	ENSGT00940000159251 #34	ENSGT00990000211939	ENSGT01000000214434.F #35	ENSGT00940000162061 #36
Percora_a	ANCESTRAL SPECIES	1	ENSGT00730000111209	ENSGT00390000006503.a.j	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336.c.a #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000164101.b	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417.u.a.a.a #33	ENSGT00940000155417.u.a.b.a.b #33	ENSGT00940000155417.u.a.b.a.a.b #33	ENSGT00940000155417.u.a.b.a.a.a #33	ENSGT00940000159251 #34	ENSGT00990000211939
Bovidae	ANCESTRAL SPECIES	1	ENSGT00730000111209	ENSGT00390000006503.a.j	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336.c.a #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000164101.b	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417.u.a.a.a #33	ENSGT00940000155417.u.a.a.b #33	ENSGT00940000155417.u.a.b.a.a.b #33	ENSGT00940000155417.u.a.b.a.a.a #33	ENSGT00940000159251 #34	ENSGT00990000211939
Bovinae	ANCESTRAL SPECIES	1	ENSGT00730000111209	ENSGT00390000006503.a.j	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336.c.a #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000162456.p	ENSGT00740000117158	ENSGT00940000164101.b	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417.u.a.a.a #33	ENSGT00940000155417.u.a.a.b #33	ENSGT00940000155417.u.a.b.a.a.b #33	ENSGT00940000155417.u.a.b.a.a.a.a #33	ENSGT00940000159251 #34
Bos	ANCESTRAL SPECIES		ENSGT00730000111209	ENSGT00390000006503.a.j	ENSGT00940000158755	ENSGT00940000154568.u	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336.c.a #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000162456.p	ENSGT00740000117158	ENSGT00940000164101.b	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417.u.a.a.a #33	ENSGT00940000155417.u.a.a.b #33	ENSGT00940000155417.u.a.b.a.a.b #33	ENSGT00940000155417.u.a.b.a.a.a.b #33	ENSGT00940000159251 #34
Bos_a	ANCESTRAL SPECIES	1	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a.j	ENSGT00940000158755	ENSGT00940000154568.u	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336.c.a #15	ENSGT00940000153733.B #16	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000162456.p	ENSGT00740000117158	ENSGT00940000164101.b	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417.u.a.a.a #33	ENSGT00940000155417.u.a.b.a.a.a.b #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36
Domestic yak	MODERN SPECIES	22	DNAJC6 (ENSBGRG00000013298)	ENSBGRG00000013984	ENSBGRG00000014003	ENSBGRG00000014022	ENSBGRG00000014156	JAK1 (ENSBGRG00000014206)	RAVER2 (ENSBGRG00000014623) #7	CACHD1 (ENSBGRG00000014987) #9	UBE2U (ENSBGRG00000016440) #10	ROR1 (ENSBGRG00000016686) #12	ENSBGRG00000017009	EFCAB7 (ENSBGRG00000017077)	ENSBGRG00000018100 #15	ALG6 (ENSBGRG00000018183) #16	ATG4C (ENSBGRG00000018342) #19	DOCK7 (ENSBGRG00000018618) #22	ANGPTL3 (ENSBGRG00000021909) #23	USP1 (ENSBGRG00000021990) #24	ENSBGRG00000022077 #25	ENSBGRG00000022209	ENSBGRG00000022229	ENSBGRG00000022263	PATJ (ENSBGRG00000022311) #28	ENSBGRG00000022909	ENSBGRG00000022922	TM2D1 (ENSBGRG00000022969) #29	ENSBGRG00000023087	NFIA (ENSBGRG00000023142) #30	C1orf87 (ENSBGRG00000023807) #32	ENSBGRG00000023881 #33	ENSBGRG00000024031 #33
Wild yak	MODERN SPECIES	1138											PGM1 (ENSBMUG00000020999) #14	EFCAB7 (ENSBMUG00000021012)	ENSBMUG00000021032 #15	ALG6 (ENSBMUG00000021062) #16	ATG4C (ENSBMUG00000021096) #19	DOCK7 (ENSBMUG00000021411) #22	ANGPTL3 (ENSBMUG00000021654) #23	USP1 (ENSBMUG00000021683) #24
Bos_b	ANCESTRAL SPECIES	1	ENSGT00730000111209	ENSGT00390000006503.a.i.a	ENSGT00940000158755	ENSGT00940000154568.u	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336.c.a #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00740000117158	ENSGT00940000164101.b	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417.u.a.a.a #33	ENSGT00940000155417.u.a.a.b #33	ENSGT00940000155417.u.a.b.a.a.b #33	ENSGT00940000155417.u.a.b.a.a.a.a #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35
Cow	MODERN SPECIES	22	LEPR (ENSBTAG00000005910)	LEPROT (ENSBTAG00000005909)	DNAJC6 (ENSBTAG00000030749)	AK4 (ENSBTAG00000030674)	JAK1 (ENSBTAG00000003147)	RAVER2 (ENSBTAG00000030686) #7	CACHD1 (ENSBTAG00000016455) #9	UBE2U (ENSBTAG00000040268) #10	ROR1 (ENSBTAG00000012312) #12	PGM1 (ENSBTAG00000019011) #14	EFCAB7 (ENSBTAG00000002600)	ITGB3BP (ENSBTAG00000030710) #15	ALG6 (ENSBTAG00000030706) #16	FOXD3 (ENSBTAG00000008501) #17	ATG4C (ENSBTAG00000010124) #19	DOCK7 (ENSBTAG00000019877) #22	ANGPTL3 (ENSBTAG00000021386) #23	USP1 (ENSBTAG00000020451) #24	KANK4 (ENSBTAG00000014382) #25	ENSBTAG00000047830	PATJ (ENSBTAG00000021975) #28	ENSBTAG00000046720	TM2D1 (ENSBTAG00000017161) #29	ENSBTAG00000009769	NFIA (ENSBTAG00000000074) #30	C3H1orf87 (ENSBTAG00000009481) #32	ENSBTAG00000051542 #33	ENSBTAG00000051904 #33	ENSBTAG00000053766 #33	CYP2J30 (ENSBTAG00000051030) #33	HOOK1 (ENSBTAG00000030671) #34
Hybrid Bos Indicus	MODERN SPECIES	22	ENSBIXG00005022017	JAK1 (ENSBIXG00005021985)	RAVER2 (ENSBIXG00005003691) #7	ENSBIXG00005006461	CACHD1 (ENSBIXG00005021823) #9	UBE2U (ENSBIXG00005021577) #10	ENSBIXG00005000011	ROR1 (ENSBIXG00005021527) #12	ENSBIXG00005021452	PGM1 (ENSBIXG00005021422) #14	EFCAB7 (ENSBIXG00005003600)	ENSBIXG00005021312 #15	ALG6 (ENSBIXG00005021259) #16	ENSBIXG00005021222	ATG4C (ENSBIXG00005003580) #19	DOCK7 (ENSBIXG00005020995) #22	ANGPTL3 (ENSBIXG00005020614) #23	USP1 (ENSBIXG00005020600) #24	KANK4 (ENSBIXG00005020554) #25	ENSBIXG00005020474	ENSBIXG00005020451	PATJ (ENSBIXG00005003424) #28	ENSBIXG00005020179	TM2D1 (ENSBIXG00005020166) #29	ENSBIXG00005020134	NFIA (ENSBIXG00005020048) #30	ENSBIXG00005019575	C1orf87 (ENSBIXG00005019556) #32	ENSBIXG00005019472 #33	ENSBIXG00005019340 #33	HOOK1 (ENSBIXG00005003139) #34
American bison	MODERN SPECIES	2943											PGM1 (ENSBBBG00000021191) #14	EFCAB7 (ENSBBBG00000021157)	ENSBBBG00000021141 #15	ALG6 (ENSBBBG00000021124) #16	ATG4C (ENSBBBG00000021066) #19	DOCK7 (ENSBBBG00000020989) #22	ANGPTL3 (ENSBBBG00000000578) #23	USP1 (ENSBBBG00000000583) #24	KANK4 (ENSBBBG00000000615) #25	ENSBBBG00000000661	ENSBBBG00000000675	ENSBBBG00000000683	PATJ (ENSBBBG00000020417) #28	TM2D1 (ENSBBBG00000020219) #29	ENSBBBG00000005451	NFIA (ENSBBBG00000020188) #30
Caprinae	ANCESTRAL SPECIES	2	ENSGT00390000006503.a.j	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336.c.a #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000164101.b	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00910000147158	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417.u.a.a.b #33	ENSGT00940000155417.u.a.b.a.a.b #33	ENSGT00940000155417.u.a.b.a.a.a #33	ENSGT00940000159251 #34	ENSGT00990000211939	ENSGT01000000214434.F #35	ENSGT00940000162061 #36
Rambouillet Sheep	MODERN SPECIES		PDE4B (ENSOARG00020007182)	LEPR (ENSOARG00020006509)	LEPROT (ENSOARG00020026025)	DNAJC6 (ENSOARG00020025984)	ENSOARG00020025972	JAK1 (ENSOARG00020025959)	RAVER2 (ENSOARG00020025947) #7	CACHD1 (ENSOARG00020025918) #9	UBE2U (ENSOARG00020025900) #10	ROR1 (ENSOARG00020025892) #12	ITGB3BP (ENSOARG00020025849) #15	ALG6 (ENSOARG00020025843) #16	FOXD3 (ENSOARG00020025839) #17	ATG4C (ENSOARG00020025832) #19	ANGPTL3 (ENSOARG00020025829) #23	DOCK7 (ENSOARG00020025422) #22	USP1 (ENSOARG00020025306) #24	KANK4 (ENSOARG00020025276) #25	ENSOARG00020025257	ENSOARG00020025248	ENSOARG00020025242	PATJ (ENSOARG00020024177) #28	TM2D1 (ENSOARG00020024049) #29	NFIA (ENSOARG00020023719) #30	ENSOARG00020023663 #33	ENSOARG00020023639 #32	CYP2J (ENSOARG00020023337) #33	HOOK1 (ENSOARG00020023235) #34	ENSOARG00020023217	FGGY (ENSOARG00020023091) #35	ENSOARG00020023058
Goat	MODERN SPECIES	22	ENSCHIG00000003262	JAK1 (ENSCHIG00000012708)	ENSCHIG00000022704	RAVER2 (ENSCHIG00000005514) #7	CACHD1 (ENSCHIG00000012365) #9	UBE2U (ENSCHIG00000018663) #10	ROR1 (ENSCHIG00000027140) #12	PGM1 (ENSCHIG00000018654) #14	EFCAB7 (ENSCHIG00000020023)	ITGB3BP (ENSCHIG00000015244) #15	ALG6 (ENSCHIG00000019050) #16	ATG4C (ENSCHIG00000024580) #19	ENSCHIG00000022527	ENSCHIG00000013344	ANGPTL3 (ENSCHIG00000018304) #23	DOCK7 (ENSCHIG00000022741) #22	USP1 (ENSCHIG00000015997) #24	KANK4 (ENSCHIG00000026610) #25	ENSCHIG00000012571	PATJ (ENSCHIG00000023685) #28	TM2D1 (ENSCHIG00000026504) #29	ENSCHIG00000012418	NFIA (ENSCHIG00000011380) #30	C1orf87 (ENSCHIG00000023812) #32	CYP2J26 (ENSCHIG00000021521) #33	CYP2J29 (ENSCHIG00000009032) #33	CYP2J30 (ENSCHIG00000022554) #33	HOOK1 (ENSCHIG00000025016) #34	ENSCHIG00000018971	FGGY (ENSCHIG00000022252) #35	JUN (ENSCHIG00000004093) #36
Siberian musk deer	MODERN SPECIES	339	LEPROT (ENSMMSG00000007926)	ENSMMSG00000007989	ENSMMSG00000008200	ENSMMSG00000008256	JAK1 (ENSMMSG00000008290)	RAVER2 (ENSMMSG00000008514) #7	CACHD1 (ENSMMSG00000008645) #9	UBE2U (ENSMMSG00000008852) #10	ROR1 (ENSMMSG00000008912) #12	PGM1 (ENSMMSG00000009049) #14	EFCAB7 (ENSMMSG00000009202)	ITGB3BP (ENSMMSG00000009277) #15	ALG6 (ENSMMSG00000009336) #16	FOXD3 (ENSMMSG00000009398) #17	ATG4C (ENSMMSG00000009422) #19	DOCK7 (ENSMMSG00000009564) #22	ANGPTL3 (ENSMMSG00000009744) #23	ENSMMSG00000009774 #24	KANK4 (ENSMMSG00000009822) #25	ENSMMSG00000009926	ENSMMSG00000009951	PATJ (ENSMMSG00000010039) #28	ENSMMSG00000010512	TM2D1 (ENSMMSG00000010559) #29	ENSMMSG00000010635 #30
Yarkand deer	MODERN SPECIES	12	ENSCHYG00000007928	ENSCHYG00000008297	ENSCHYG00000008325	ENSCHYG00000008363	ENSCHYG00000008481 #7	ENSCHYG00000008642 #9	ENSCHYG00000009027	UBE2U (ENSCHYG00000009046) #10	ROR1 (ENSCHYG00000009213) #12	PGM1 (ENSCHYG00000009453) #14	EFCAB7 (ENSCHYG00000009641)	ITGB3BP (ENSCHYG00000009805) #15	ALG6 (ENSCHYG00000010031) #16	FOXD3 (ENSCHYG00000010241) #17	ATG4C (ENSCHYG00000010279) #19	DOCK7 (ENSCHYG00000010521) #22	ANGPTL3 (ENSCHYG00000010829) #23	USP1 (ENSCHYG00000010926) #24	KANK4 (ENSCHYG00000011035) #25	ENSCHYG00000011307	ENSCHYG00000011320	ENSCHYG00000011355	ENSCHYG00000011365	PATJ (ENSCHYG00000011502) #28	TM2D1 (ENSCHYG00000012921) #29	NFIA (ENSCHYG00000013049) #30	ENSCHYG00000013294	C1orf87 (ENSCHYG00000013337) #32	ENSCHYG00000013601 #33	HOOK1 (ENSCHYG00000014199) #34	FGGY (ENSCHYG00000014481) #35
Cetacea	ANCESTRAL SPECIES		ENSGT00940000154568	ENSGT00940000154169.A.l	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00940000154277.a.b.b.m.b	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a.e #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243.c.a.a #24	ENSGT00940000158468 #25	ENSGT00940000164101.b	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417.v #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027	ENSGT00940000158038
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000154568	ENSGT00940000154169.A.l	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00940000154277.a.b.b.m.b	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a.e #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243.c.a.a #24	ENSGT00940000158468 #25	ENSGT00940000164101.b	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417.v #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027	ENSGT00940000158038
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00940000154568	ENSGT00940000154169.A.l	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00940000154277.a.b.b.m.b	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a.e #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243.c.a.a #24	ENSGT00940000158468 #25	ENSGT00940000164101.b	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417.v #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d.c	ENSGT00390000007027	ENSGT00940000158038
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000154568	ENSGT00940000154169.A.l	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00940000154277.a.b.b.m.b	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a.e #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243.c.a.a #24	ENSGT00940000158468 #25	ENSGT00940000164101.b	ENSGT00390000015470.m.a	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417.v #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d.c	ENSGT00390000007027
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000154568	ENSGT00940000154169.A.l	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00940000154277.a.b.b.m.b	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a.e #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243.c.a.a #24	ENSGT00940000158468 #25	ENSGT00940000164101.b	ENSGT00390000015470.m.a	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417.v #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d.c	ENSGT00390000007027
Narwhal	MODERN SPECIES	304	ENSMMNG00015022063	ENSMMNG00015022064	ENSMMNG00015022065	JAK1 (ENSMMNG00015022067)	RAVER2 (ENSMMNG00015022068) #7	CACHD1 (ENSMMNG00015022069) #9	UBE2U (ENSMMNG00015022070) #10	ROR1 (ENSMMNG00015022071) #12	PGM1 (ENSMMNG00015022072) #14	EFCAB7 (ENSMMNG00015022073)	ITGB3BP (ENSMMNG00015022074) #15	ENSMMNG00015022076	ALG6 (ENSMMNG00015022080) #16	FOXD3 (ENSMMNG00015022081) #17	ATG4C (ENSMMNG00015022082) #19	DOCK7 (ENSMMNG00015022084) #22	ANGPTL3 (ENSMMNG00015022086) #23	ENSMMNG00015022087 #24	KANK4 (ENSMMNG00015022089) #25	ENSMMNG00015022090	PATJ (ENSMMNG00015022091) #28	TM2D1 (ENSMMNG00015022092) #29	NFIA (ENSMMNG00015022095) #30	ENSMMNG00015022096 #32	CYP2J2 (ENSMMNG00015022097) #33	HOOK1 (ENSMMNG00015022098) #34	FGGY (ENSMMNG00015022099) #35	JUN (ENSMMNG00015022101) #36	MYSM1 (ENSMMNG00015022102) #37	ENSMMNG00015022103	OMA1 (ENSMMNG00015022104)
Beluga whale	MODERN SPECIES	74	ENSDLEG00000021295	ENSDLEG00000021294	JAK1 (ENSDLEG00000021291)	RAVER2 (ENSDLEG00000021287) #7	CACHD1 (ENSDLEG00000021280) #9	UBE2U (ENSDLEG00000021278) #10	ROR1 (ENSDLEG00000021274) #12	PGM1 (ENSDLEG00000021272) #14	EFCAB7 (ENSDLEG00000021268)	ENSDLEG00000021263	ITGB3BP (ENSDLEG00000021262) #15	ALG6 (ENSDLEG00000021260) #16	FOXD3 (ENSDLEG00000021257) #17	ATG4C (ENSDLEG00000021255) #19	ANGPTL3 (ENSDLEG00000021249) #23	DOCK7 (ENSDLEG00000010129) #22	USP1 (ENSDLEG00000020714) #24	KANK4 (ENSDLEG00000020692) #25	ENSDLEG00000020688	ENSDLEG00000020682	PATJ (ENSDLEG00000019785) #28	TM2D1 (ENSDLEG00000019664) #29	NFIA (ENSDLEG00000019647) #30	CYP2J2 (ENSDLEG00000019634) #33	HOOK1 (ENSDLEG00000019616) #34	FGGY (ENSDLEG00000019599) #35	JUN (ENSDLEG00000019588) #36	MYSM1 (ENSDLEG00000019577) #37	TACSTD2 (ENSDLEG00000019574)	OMA1 (ENSDLEG00000019566)	ENSDLEG00000019563
Vaquita	MODERN SPECIES		ENSPSNG00000003242	JAK1 (ENSPSNG00000003215)	RAVER2 (ENSPSNG00000003159) #7	CACHD1 (ENSPSNG00000003080) #9	UBE2U (ENSPSNG00000003039) #10	ROR1 (ENSPSNG00000003007) #12	PGM1 (ENSPSNG00000002952) #14	EFCAB7 (ENSPSNG00000002909)	ENSPSNG00000002888	ENSPSNG00000002872	ITGB3BP (ENSPSNG00000002857) #15	ALG6 (ENSPSNG00000002827) #16	FOXD3 (ENSPSNG00000002801) #17	ATG4C (ENSPSNG00000002761) #19	ANGPTL3 (ENSPSNG00000002721) #23	DOCK7 (ENSPSNG00000002635) #22	USP1 (ENSPSNG00000002605) #24	KANK4 (ENSPSNG00000002529) #25	ENSPSNG00000002492	ENSPSNG00000002480	PATJ (ENSPSNG00000002448) #28	TM2D1 (ENSPSNG00000002408) #29	ENSPSNG00000002380	NFIA (ENSPSNG00000002205) #30	ENSPSNG00000002024 #32	CYP2J2 (ENSPSNG00000002001) #33	HOOK1 (ENSPSNG00000001959) #34	FGGY (ENSPSNG00000001878) #35	JUN (ENSPSNG00000001806) #36	MYSM1 (ENSPSNG00000001783) #37	TACSTD2 (ENSPSNG00000001769)
Dolphin	MODERN SPECIES	1387														ATG4C (ENSTTRG00000013910) #19	ANGPTL3 (ENSTTRG00000013901) #23	DOCK7 (ENSTTRG00000013880) #22	USP1 (ENSTTRG00000013871) #24
Sperm whale	MODERN SPECIES	15	DNAJC6 (ENSPCTG00005022551)	AK4 (ENSPCTG00005022622)	ENSPCTG00005022639	JAK1 (ENSPCTG00005022651)	RAVER2 (ENSPCTG00005022653) #7	CACHD1 (ENSPCTG00005022667) #9	UBE2U (ENSPCTG00005022676) #10	ROR1 (ENSPCTG00005022678) #12	EFCAB7 (ENSPCTG00005022682)	ITGB3BP (ENSPCTG00005022687) #15	ENSPCTG00005022689	ENSPCTG00005022690	ALG6 (ENSPCTG00005022695) #16	FOXD3 (ENSPCTG00005022700) #17	ENSPCTG00005022703 #19	DOCK7 (ENSPCTG00005022710) #22	ANGPTL3 (ENSPCTG00005022717) #23	USP1 (ENSPCTG00005022719) #24	KANK4 (ENSPCTG00005022722) #25	ENSPCTG00005022724	PATJ (ENSPCTG00005022726) #28	ENSPCTG00005022745	TM2D1 (ENSPCTG00005022746) #29	NFIA (ENSPCTG00005022749) #30	ENSPCTG00005022759 #32	CYP2J2 (ENSPCTG00005022760) #33	FGGY (ENSPCTG00005022765) #35	HOOK1 (ENSPCTG00005022771) #34	MYSM1 (ENSPCTG00005022773) #37	ENSPCTG00005022774	TACSTD2 (ENSPCTG00005022775)
Blue whale	MODERN SPECIES		ENSBMSG00010003046	JAK1 (ENSBMSG00010002874)	RAVER2 (ENSBMSG00010002835) #7	CACHD1 (ENSBMSG00010002730) #9	UBE2U (ENSBMSG00010002698) #10	ROR1 (ENSBMSG00010002655) #12	PGM1 (ENSBMSG00010002593) #14	EFCAB7 (ENSBMSG00010002542)	ENSBMSG00010002519	ITGB3BP (ENSBMSG00010002488) #15	ALG6 (ENSBMSG00010002470) #16	FOXD3 (ENSBMSG00010002458) #17	ENSBMSG00010002428 #19	ENSBMSG00010002413	ANGPTL3 (ENSBMSG00010002379) #23	DOCK7 (ENSBMSG00010002212) #22	ENSBMSG00010002182 #24	ENSBMSG00010002165	KANK4 (ENSBMSG00010002062) #25	ENSBMSG00010002038	PATJ (ENSBMSG00010001826) #28	TM2D1 (ENSBMSG00010001753) #29	NFIA (ENSBMSG00010001455) #30	ENSBMSG00010001338 #32	CYP2J2 (ENSBMSG00010001319) #33	HOOK1 (ENSBMSG00010001303) #34	FGGY (ENSBMSG00010001218) #35	JUN (ENSBMSG00010001187) #36	MYSM1 (ENSBMSG00010001159) #37	TACSTD2 (ENSBMSG00010001148)	OMA1 (ENSBMSG00010001120)
Suina	ANCESTRAL SPECIES	27	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000164101.b	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417.v.b #33	ENSGT00940000155417.v.a.a.b #33	ENSGT00940000155417.v.a.b #33	ENSGT00940000155417.u.b.a #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36
Pig	MODERN SPECIES	14	PDE4B (ENSSSCG00000003805)	ENSSSCG00000040903	LEPR (ENSSSCG00000025188)	LEPROT (ENSSSCG00000003806)	DNAJC6 (ENSSSCG00000003807)	ENSSSCG00000040337	JAK1 (ENSSSCG00000003809)	RAVER2 (ENSSSCG00000025672) #7	CACHD1 (ENSSSCG00000004829) #9	ROR1 (ENSSSCG00000003811) #12	EFCAB7 (ENSSSCG00000003812)	ENSSSCG00000042211	ALG6 (ENSSSCG00000003815) #16	FOXD3 (ENSSSCG00000032215) #17	ATG4C (ENSSSCG00000003816) #19	DOCK7 (ENSSSCG00000003818) #22	ANGPTL3 (ENSSSCG00000003819) #23	USP1 (ENSSSCG00000003820) #24	KANK4 (ENSSSCG00000003821) #25	ENSSSCG00000031640	PATJ (ENSSSCG00000039793) #28	TM2D1 (ENSSSCG00000038861) #29	NFIA (ENSSSCG00000023243) #30	ENSSSCG00000059647	ENSSSCG00000044064	ENSSSCG00000057014	ENSSSCG00000033042	C1orf87 (ENSSSCG00000003823) #32	ENSSSCG00000061116 #33	ENSSSCG00000055127 #33	ENSSSCG00000003825 #33
Chacoan peccary	MODERN SPECIES	54	LEPR (ENSCWAG00000009654)	LEPROT (ENSCWAG00000009749)	DNAJC6 (ENSCWAG00000009899)	ENSCWAG00000010175	JAK1 (ENSCWAG00000010234)	RAVER2 (ENSCWAG00000010298) #7	CACHD1 (ENSCWAG00000010433) #9	ENSCWAG00000010798 #10	ROR1 (ENSCWAG00000010877) #12	PGM1 (ENSCWAG00000011042) #14	EFCAB7 (ENSCWAG00000011246)	ALG6 (ENSCWAG00000011295) #16	FOXD3 (ENSCWAG00000011349) #17	ATG4C (ENSCWAG00000011374) #19	ENSCWAG00000011429	DOCK7 (ENSCWAG00000011480) #22	ANGPTL3 (ENSCWAG00000011690) #23	USP1 (ENSCWAG00000011770) #24	KANK4 (ENSCWAG00000011865) #25	ENSCWAG00000012174	PATJ (ENSCWAG00000012251) #28	TM2D1 (ENSCWAG00000013044) #29	NFIA (ENSCWAG00000013155) #30	ENSCWAG00000013519	ENSCWAG00000013573	C1orf87 (ENSCWAG00000013603) #32	ENSCWAG00000013698 #33	ENSCWAG00000013744 #33	ENSCWAG00000013782 #33	ENSCWAG00000013842 #33	ENSCWAG00000014136 #33
Eulipotyphla	ANCESTRAL SPECIES	541															ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24
Common shrew	MODERN SPECIES	4232															ANGPTL3 (ENSSARG00000002559) #23	ENSSARG00000002456 #22	USP1 (ENSSARG00000002366) #24
Hedgehog	MODERN SPECIES	1821															ANGPTL3 (ENSEEUG00000003961) #23	DOCK7 (ENSEEUG00000003747) #22
Atlantogenata	ANCESTRAL SPECIES	11	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT01050000244818 #26	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027	ENSGT00940000158038
Xenarthra	ANCESTRAL SPECIES	1254														ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	1930												ATG4C (ENSDNOG00000012698) #19	ENSDNOG00000034102	ENSDNOG00000033692	ANGPTL3 (ENSDNOG00000009136) #23	ENSDNOG00000009048 #22	ENSDNOG00000048441	ENSDNOG00000049464 #22	USP1 (ENSDNOG00000009024) #24	ENSDNOG00000046457
Armadillo	MODERN SPECIES	1930										ATG4C (ENSDNOG00000012698) #19	ENSDNOG00000034102	ENSDNOG00000033692	ANGPTL3 (ENSDNOG00000009136) #23	ENSDNOG00000009048 #22	ENSDNOG00000048441	ENSDNOG00000049464 #22	USP1 (ENSDNOG00000009024) #24	ENSDNOG00000046457
Sloth	MODERN SPECIES	1547																DOCK7 (ENSCHOG00000001951) #22
Afrotheria	ANCESTRAL SPECIES	21	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027	ENSGT00940000158038	ENSGT00940000160247
Tenrec	MODERN SPECIES	5287															ANGPTL3 (ENSETEG00000004832) #23	DOCK7 (ENSETEG00000004824) #22	USP1 (ENSETEG00000004819) #24
Afrotheria_a	ANCESTRAL SPECIES	20	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00940000155417 #33	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027	ENSGT00940000158038
Hyrax	MODERN SPECIES	4490																DOCK7 (ENSPCAG00000002874) #22	USP1 (ENSPCAG00000002838) #24
Elephant	MODERN SPECIES	145	PDE4B (ENSLAFG00000018427)	LEPR (ENSLAFG00000003592)	LEPROT (ENSLAFG00000030966)	DNAJC6 (ENSLAFG00000008887)	ENSLAFG00000008098	JAK1 (ENSLAFG00000003730)	RAVER2 (ENSLAFG00000012508) #7	CACHD1 (ENSLAFG00000009161) #9	ENSLAFG00000012636 #10	ROR1 (ENSLAFG00000012631) #12	PGM1 (ENSLAFG00000004820) #14	EFCAB7 (ENSLAFG00000004814)	ALG6 (ENSLAFG00000002400) #16	FOXD3 (ENSLAFG00000003874) #17	ATG4C (ENSLAFG00000009126) #19	DOCK7 (ENSLAFG00000002410) #22	ANGPTL3 (ENSLAFG00000002419) #23	USP1 (ENSLAFG00000023157) #24	KANK4 (ENSLAFG00000007974) #25	PATJ (ENSLAFG00000007961) #28	TM2D1 (ENSLAFG00000013979) #29	ENSLAFG00000031230 #30	ENSLAFG00000025943 #30	C1orf87 (ENSLAFG00000012275) #32	ENSLAFG00000022626 #33	ENSLAFG00000011542 #33	ENSLAFG00000013089 #33	HOOK1 (ENSLAFG00000013082) #34	FGGY (ENSLAFG00000013080) #35	JUN (ENSLAFG00000012900) #36	MYSM1 (ENSLAFG00000003849) #37
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00950000182879.b	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027	ENSGT00940000158038
Marsupialia_b	ANCESTRAL SPECIES	27	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B.b #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00950000182879.b	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Diprotodontia	ANCESTRAL SPECIES	39	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B.b #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00950000182879.b.c	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027	ENSGT00940000158038	ENSGT00940000160126
Diprotodontia_a	ANCESTRAL SPECIES	3	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B.b #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00390000008678 #32	ENSGT00950000182879.b.d.b	ENSGT00950000182879.b.c.a.b	ENSGT00950000182879.b.c.a.a	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Common wonbat	MODERN SPECIES	612					ENSVURG00010009238	ENSVURG00010009231	ENSVURG00010009222 #10	ROR1 (ENSVURG00010009211) #12	PGM1 (ENSVURG00010009200) #14	EFCAB7 (ENSVURG00010009191)	ENSVURG00010009182 #15	ALG6 (ENSVURG00010009169) #16	FOXD3 (ENSVURG00010009156) #17	ATG4C (ENSVURG00010009137) #19	ANGPTL3 (ENSVURG00010009124) #23	DOCK7 (ENSVURG00010008347) #22	USP1 (ENSVURG00010008279) #24	KANK4 (ENSVURG00010008241) #25	PATJ (ENSVURG00010008173) #28	TM2D1 (ENSVURG00010008155) #29	NFIA (ENSVURG00010008122) #30	ENSVURG00010008077	ENSVURG00010008072	C1orf87 (ENSVURG00010008051) #32	ENSVURG00010008037	ENSVURG00010008025	ENSVURG00010007958	HOOK1 (ENSVURG00010007915) #34	FGGY (ENSVURG00010007865) #35	JUN (ENSVURG00010007825) #36	MYSM1 (ENSVURG00010007771) #37
koala	MODERN SPECIES	49	LEPR (ENSPCIG00000004493)	LEPROT (ENSPCIG00000031497)	DNAJC6 (ENSPCIG00000008073)	ENSPCIG00000015548	JAK1 (ENSPCIG00000020331)	RAVER2 (ENSPCIG00000020336) #7	CACHD1 (ENSPCIG00000020340) #9	ENSPCIG00000036138 #10	ENSPCIG00000020349	ROR1 (ENSPCIG00000020351) #12	PGM1 (ENSPCIG00000007255) #14	EFCAB7 (ENSPCIG00000007250)	ENSPCIG00000007247 #15	ENSPCIG00000007193 #16	ATG4C (ENSPCIG00000019434) #19	DOCK7 (ENSPCIG00000019504) #22	ANGPTL3 (ENSPCIG00000020036) #23	USP1 (ENSPCIG00000020037) #24	ENSPCIG00000031531 #25	PATJ (ENSPCIG00000020040) #28	TM2D1 (ENSPCIG00000020042) #29	NFIA (ENSPCIG00000005498) #30	ENSPCIG00000031609 #32	ENSPCIG00000006257	ENSPCIG00000036750	ENSPCIG00000004950	ENSPCIG00000005678	ENSPCIG00000004929	ENSPCIG00000005704	HOOK1 (ENSPCIG00000027352) #34	FGGY (ENSPCIG00000027346) #35
Wallaby	MODERN SPECIES	6644																DOCK7 (ENSMEUG00000005837) #22	USP1 (ENSMEUG00000005822) #24
Tasmanian devil	MODERN SPECIES	3	DNAJC6 (ENSSHAG00000011701)	ENSSHAG00000012804	JAK1 (ENSSHAG00000014365)	RAVER2 (ENSSHAG00000014568) #7	CACHD1 (ENSSHAG00000015047) #9	ENSSHAG00000032234	ENSSHAG00000024628 #10	ROR1 (ENSSHAG00000028402) #12	PGM1 (ENSSHAG00000017168) #14	EFCAB7 (ENSSHAG00000017313)	ENSSHAG00000017386 #15	ALG6 (ENSSHAG00000023626) #16	ENSSHAG00000022262	ENSSHAG00000032110	ATG4C (ENSSHAG00000018179) #19	DOCK7 (ENSSHAG00000018327) #22	ANGPTL3 (ENSSHAG00000024292) #23	USP1 (ENSSHAG00000018473) #24	KANK4 (ENSSHAG00000020475) #25	PATJ (ENSSHAG00000018648) #28	NFIA (ENSSHAG00000027297) #30	ENSSHAG00000011565 #32	ENSSHAG00000012280	ENSSHAG00000000445	ENSSHAG00000012756	HOOK1 (ENSSHAG00000002611) #34	FGGY (ENSSHAG00000005180) #35	JUN (ENSSHAG00000030786) #36	ENSSHAG00000031806	MYSM1 (ENSSHAG00000013607) #37	TACSTD2 (ENSSHAG00000022593)
Platypus	MODERN SPECIES	9	ENSOANG00000006856	PDE4B (ENSOANG00000037786)	ENSOANG00000000396	LEPROT (ENSOANG00000002459)	DNAJC6 (ENSOANG00000044288)	ENSOANG00000009019	JAK1 (ENSOANG00000042832)	RAVER2 (ENSOANG00000008327) #7	CACHD1 (ENSOANG00000008330) #9	ENSOANG00000021175 #10	ROR1 (ENSOANG00000008332) #12	PGM1 (ENSOANG00000045614) #14	EFCAB7 (ENSOANG00000008334)	ALG6 (ENSOANG00000008335) #16	ATG4C (ENSOANG00000008336) #19	DOCK7 (ENSOANG00000009181) #22	ANGPTL3 (ENSOANG00000021792) #23	USP1 (ENSOANG00000046900) #24	ENSOANG00000011380 #25	PATJ (ENSOANG00000044043) #28	TM2D1 (ENSOANG00000049423) #29	NFIA (ENSOANG00000046375) #30	ENSOANG00000009801	HOOK1 (ENSOANG00000009802) #34	ENSOANG00000037593 #37	ENSOANG00000043776	DAB1 (ENSOANG00000046814)	C8B (ENSOANG00000041109)	ENSOANG00000009676	ENSOANG00000036347	PLPP3 (ENSOANG00000037461)
Sauria	ANCESTRAL SPECIES	7	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00940000165098	ENSGT00390000008678 #32	ENSGT00950000182879.b.i	ENSGT00950000182879.b.j	ENSGT00940000159251 #34	ENSGT00390000017123.a	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489	ENSGT00940000157721 #37
Lepidosauria	ANCESTRAL SPECIES	11	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00940000165098	ENSGT00390000008678 #32	ENSGT00950000182879.b.i	ENSGT00950000182879.b.j	ENSGT00940000159251 #34	ENSGT00390000017123.a	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489	ENSGT00940000157721 #37
Episquamata	ANCESTRAL SPECIES	1	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00940000165098	ENSGT00390000008678 #32	ENSGT00950000182879.b.i	ENSGT00950000182879.b.j	ENSGT00940000159251 #34	ENSGT00390000017123.a	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489	ENSGT00940000157721 #37
Laterata	ANCESTRAL SPECIES	3	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00940000165098	ENSGT00390000008678 #32	ENSGT00950000182879.b.j	ENSGT00940000159251 #34	ENSGT00390000017123.a	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489	ENSGT00940000157721 #37	ENSGT00390000018245.d
Common wall lizard	MODERN SPECIES	14	JAK1 (ENSPMRG00000011088)	RAVER2 (ENSPMRG00000011111) #7	ENSPMRG00000011133	CACHD1 (ENSPMRG00000011156) #9	ENSPMRG00000011227	ENSPMRG00000011232 #10	ROR1 (ENSPMRG00000011243) #12	ENSPMRG00000011246	PGM1 (ENSPMRG00000011249) #14	EFCAB7 (ENSPMRG00000011260)	ITGB3BP (ENSPMRG00000011267) #15	ALG6 (ENSPMRG00000011277) #16	ENSPMRG00000011282	FOXD3 (ENSPMRG00000011286) #17	ATG4C (ENSPMRG00000011290) #19	DOCK7 (ENSPMRG00000011757) #22	ANGPTL3 (ENSPMRG00000015301) #23	USP1 (ENSPMRG00000015310) #24	KANK4 (ENSPMRG00000015316) #25	PATJ (ENSPMRG00000015351) #28	TM2D1 (ENSPMRG00000015459) #29	NFIA (ENSPMRG00000015474) #30	ENSPMRG00000015533	ENSPMRG00000015652	ENSPMRG00000015664	ENSPMRG00000015680	ENSPMRG00000015689	ENSPMRG00000003732	ENSPMRG00000003749	ENSPMRG00000003759	ENSPMRG00000003769
Argentine black and white tegu	MODERN SPECIES	31	LEPR (ENSSMRG00000019956)	LEPROT (ENSSMRG00000019955)	DNAJC6 (ENSSMRG00000019954)	ENSSMRG00000019953	JAK1 (ENSSMRG00000018281)	RAVER2 (ENSSMRG00000018280) #7	CACHD1 (ENSSMRG00000018279) #9	ROR1 (ENSSMRG00000018278) #12	PGM1 (ENSSMRG00000018277) #14	EFCAB7 (ENSSMRG00000018276)	ITGB3BP (ENSSMRG00000018275) #15	ALG6 (ENSSMRG00000018274) #16	FOXD3 (ENSSMRG00000018273) #17	ATG4C (ENSSMRG00000018271) #19	ANGPTL3 (ENSSMRG00000018270) #23	DOCK7 (ENSSMRG00000018266) #22	USP1 (ENSSMRG00000018265) #24	KANK4 (ENSSMRG00000018264) #25	ENSSMRG00000018263	PATJ (ENSSMRG00000018061) #28	TM2D1 (ENSSMRG00000018059) #29	ENSSMRG00000018058	ENSSMRG00000018057 #30	ENSSMRG00000018056 #30	ENSSMRG00000018050	C1orf87 (ENSSMRG00000018049) #32	ENSSMRG00000018047	ENSSMRG00000018045	ENSSMRG00000018042	ENSSMRG00000018041	ENSSMRG00000018040
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00950000182879.b.i	ENSGT00950000182879.b.j	ENSGT00940000159251 #34	ENSGT00390000017123.a	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Elapidae	ANCESTRAL SPECIES	1	ENSGT00390000018600	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136.bb.b #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00940000159251 #34	ENSGT00390000017123.a	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027	ENSGT00940000158038	ENSGT00940000160247
Elapidae_a	ANCESTRAL SPECIES	7	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136.bb.a #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00940000159251 #34	ENSGT00390000017123.a	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027	ENSGT00940000158038	ENSGT00940000160247
Acanthophiinae	ANCESTRAL SPECIES	5	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136.bb.a #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00940000159251 #34	ENSGT00390000017123.a	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027	ENSGT00940000158038	ENSGT00940000160247
Mainland tiger snake	DUPLICATION
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	13	DNAJC6 (ENSNSUG00000003207)	ENSNSUG00000003203	JAK1 (ENSNSUG00000001845)	RAVER2 (ENSNSUG00000001829) #7	CACHD1 (ENSNSUG00000001826) #9	ROR1 (ENSNSUG00000001815) #12	PGM1 (ENSNSUG00000001809) #14	ITGB3BP (ENSNSUG00000001806) #15	ALG6 (ENSNSUG00000001690) #16	FOXD3 (ENSNSUG00000001688) #17	ENSNSUG00000001687	ATG4C (ENSNSUG00000001683) #19	ANGPTL3 (ENSNSUG00000001680) #23	ENSNSUG00000001673 #22	ENSNSUG00000001670 #22	ENSNSUG00000001668 #22	USP1 (ENSNSUG00000001666) #24	KANK4 (ENSNSUG00000001661) #25	ENSNSUG00000001645 #28	ENSNSUG00000001619 #28	TM2D1 (ENSNSUG00000001608) #29	NFIA (ENSNSUG00000001588) #30	ENSNSUG00000001582	ENSNSUG00000001575 #35	ENSNSUG00000001566 #35	ENSNSUG00000001561 #35	JUN (ENSNSUG00000001560) #36	ENSNSUG00000001545	MYSM1 (ENSNSUG00000001168) #37	TACSTD2 (ENSNSUG00000001167)	OMA1 (ENSNSUG00000001146)
Mainland tiger snake	MODERN SPECIES	13	ENSNSUG00000003427	LEPROT (ENSNSUG00000003416)	DNAJC6 (ENSNSUG00000003207)	ENSNSUG00000003203	JAK1 (ENSNSUG00000001845)	RAVER2 (ENSNSUG00000001829) #7	CACHD1 (ENSNSUG00000001826) #9	ROR1 (ENSNSUG00000001815) #12	PGM1 (ENSNSUG00000001809) #14	ITGB3BP (ENSNSUG00000001806) #15	ALG6 (ENSNSUG00000001690) #16	FOXD3 (ENSNSUG00000001688) #17	ENSNSUG00000001687	ATG4C (ENSNSUG00000001683) #19	ANGPTL3 (ENSNSUG00000001680) #23	ENSNSUG00000001673 #22	ENSNSUG00000001670 #22	ENSNSUG00000001668 #22	USP1 (ENSNSUG00000001666) #24	KANK4 (ENSNSUG00000001661) #25	ENSNSUG00000001645 #28	ENSNSUG00000001619 #28	TM2D1 (ENSNSUG00000001608) #29	NFIA (ENSNSUG00000001588) #30	ENSNSUG00000001582	ENSNSUG00000001575 #35	ENSNSUG00000001566 #35	ENSNSUG00000001561 #35	JUN (ENSNSUG00000001560) #36	ENSNSUG00000001545	MYSM1 (ENSNSUG00000001168) #37
Mainland tiger snake	MODERN SPECIES	13	LEPROT (ENSNSUG00000003416)	DNAJC6 (ENSNSUG00000003207)	ENSNSUG00000003203	JAK1 (ENSNSUG00000001845)	RAVER2 (ENSNSUG00000001829) #7	CACHD1 (ENSNSUG00000001826) #9	ROR1 (ENSNSUG00000001815) #12	PGM1 (ENSNSUG00000001809) #14	ITGB3BP (ENSNSUG00000001806) #15	ALG6 (ENSNSUG00000001690) #16	FOXD3 (ENSNSUG00000001688) #17	ENSNSUG00000001687	ATG4C (ENSNSUG00000001683) #19	ANGPTL3 (ENSNSUG00000001680) #23	ENSNSUG00000001673 #22	ENSNSUG00000001670 #22	ENSNSUG00000001668 #22	USP1 (ENSNSUG00000001666) #24	KANK4 (ENSNSUG00000001661) #25	ENSNSUG00000001645 #28	ENSNSUG00000001619 #28	TM2D1 (ENSNSUG00000001608) #29	NFIA (ENSNSUG00000001588) #30	ENSNSUG00000001582	ENSNSUG00000001575 #35	ENSNSUG00000001566 #35	ENSNSUG00000001561 #35	JUN (ENSNSUG00000001560) #36	ENSNSUG00000001545	MYSM1 (ENSNSUG00000001168) #37	TACSTD2 (ENSNSUG00000001167)
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	109	ENSPTXG00000013633	ENSPTXG00000013559	ENSPTXG00000013555	ENSPTXG00000012522	ENSPTXG00000012498	ENSPTXG00000012489	ENSPTXG00000012478 #7	ENSPTXG00000012470 #9	ENSPTXG00000018936 #12	ENSPTXG00000018935 #14	ENSPTXG00000018934	ENSPTXG00000018933 #16	ENSPTXG00000018932 #17	ENSPTXG00000018931 #19	ENSPTXG00000018930 #23	ENSPTXG00000018929 #22	ENSPTXG00000018928 #24	ENSPTXG00000018927 #25	ENSPTXG00000018926 #28	ENSPTXG00000018925 #29	ENSPTXG00000018924 #30
Eastern brown snake	MODERN SPECIES	107		ENSPTXG00000018869	ENSPTXG00000018868	ENSPTXG00000018867	ENSPTXG00000018854	ENSPTXG00000018846	ENSPTXG00000018843	ENSPTXG00000018841 #7	ENSPTXG00000018838 #9	ENSPTXG00000018836 #12	ENSPTXG00000018834 #14	ENSPTXG00000018832 #16	ENSPTXG00000018830 #17	ENSPTXG00000018829 #19	ENSPTXG00000018828 #23	ENSPTXG00000018658 #22	ENSPTXG00000018642 #24	ENSPTXG00000018641 #25	ENSPTXG00000018640 #28	ENSPTXG00000018639 #29	ENSPTXG00000018638 #30
Blue-lipped sea krait	MODERN SPECIES	318														ATG4C (ENSLLTG00000014532) #19	ANGPTL3 (ENSLLTG00000014527) #23	DOCK7 (ENSLLTG00000014459) #22	USP1 (ENSLLTG00000014439) #24
Indian cobra	MODERN SPECIES	2	LEPROT (ENSNNAG00000017872)	DNAJC6 (ENSNNAG00000017647)	ENSNNAG00000017594	ENSNNAG00000017585	ENSNNAG00000016668	ENSNNAG00000016582	RAVER2 (ENSNNAG00000016550) #7	CACHD1 (ENSNNAG00000016329) #9	ROR1 (ENSNNAG00000016256) #12	PGM1 (ENSNNAG00000016220) #14	ENSNNAG00000016201 #15	ALG6 (ENSNNAG00000016183) #16	FOXD3 (ENSNNAG00000016171) #17	ATG4C (ENSNNAG00000016146) #19	ANGPTL3 (ENSNNAG00000016124) #23	DOCK7 (ENSNNAG00000012070) #22	USP1 (ENSNNAG00000011759) #24	KANK4 (ENSNNAG00000011718) #25	PATJ (ENSNNAG00000011539) #28	TM2D1 (ENSNNAG00000011456) #29	ENSNNAG00000011408 #30	ENSNNAG00000011318 #30	HOOK1 (ENSNNAG00000011247) #34	ENSNNAG00000011231	FGGY (ENSNNAG00000011194) #35	JUN (ENSNNAG00000011183) #36	ENSNNAG00000010866	MYSM1 (ENSNNAG00000010769) #37	TACSTD2 (ENSNNAG00000010748)	OMA1 (ENSNNAG00000010724)	ENSNNAG00000010634
Lizard	MODERN SPECIES	3	JAK1 (ENSACAG00000008478)	RAVER2 (ENSACAG00000008443) #7	CACHD1 (ENSACAG00000008354) #9	UBE2U (ENSACAG00000029076) #10	ROR1 (ENSACAG00000008290) #12	ENSACAG00000040114	PGM1 (ENSACAG00000008181) #14	EFCAB7 (ENSACAG00000008144)	ENSACAG00000029342 #15	ENSACAG00000044958	ALG6 (ENSACAG00000008132) #16	ENSACAG00000039980	ENSACAG00000022097	ENSACAG00000034691	ATG4C (ENSACAG00000008101) #19	DOCK7 (ENSACAG00000007870) #22	ANGPTL3 (ENSACAG00000022908) #23	USP1 (ENSACAG00000007833) #24	KANK4 (ENSACAG00000007807) #25	PATJ (ENSACAG00000007792) #28	TM2D1 (ENSACAG00000038877) #29	ENSACAG00000007677 #30	ENSACAG00000017087 #30	ENSACAG00000026737	ENSACAG00000040732	ENSACAG00000034728	ENSACAG00000043177	ENSACAG00000035284	ENSACAG00000007240	ENSACAG00000034926	HOOK1 (ENSACAG00000007111) #34
tuatara	MODERN SPECIES	1725					JAK1 (ENSSPUG00000016469)	RAVER2 (ENSSPUG00000016441) #7	CACHD1 (ENSSPUG00000016415) #9	UBE2U (ENSSPUG00000016397) #10	ROR1 (ENSSPUG00000016382) #12	PGM1 (ENSSPUG00000016368) #14	EFCAB7 (ENSSPUG00000016231)	ITGB3BP (ENSSPUG00000016183) #15	ALG6 (ENSSPUG00000016166) #16	ATG4C (ENSSPUG00000016128) #19	ANGPTL3 (ENSSPUG00000016117) #23	DOCK7 (ENSSPUG00000016024) #22	USP1 (ENSSPUG00000015992) #24	ENSSPUG00000015981 #25	PATJ (ENSSPUG00000015943) #28	TM2D1 (ENSSPUG00000015914) #29	NFIA (ENSSPUG00000015850) #30	ENSSPUG00000015817	CYP2J2 (ENSSPUG00000015786)	HOOK1 (ENSSPUG00000015753) #34	ENSSPUG00000015735	ENSSPUG00000015688 #35	ENSSPUG00000015662 #35	JUN (ENSSPUG00000015656) #36	MYSM1 (ENSSPUG00000015634) #37	TACSTD2 (ENSSPUG00000015625)	ENSSPUG00000015591
Archelosauria	ANCESTRAL SPECIES	9	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00940000165098	ENSGT00390000008678 #32	ENSGT00950000182879.b.i	ENSGT00950000182879.b.j	ENSGT00940000159251 #34	ENSGT00390000017123.a	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489	ENSGT00940000157721 #37
Cryptodira	ANCESTRAL SPECIES	8	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00940000165098	ENSGT00390000008678 #32	ENSGT00950000182879.b.i	ENSGT00950000182879.b.j	ENSGT00940000159251 #34	ENSGT00390000017123.a	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489
Testudinoidea	ANCESTRAL SPECIES	5	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668.g #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00940000165098	ENSGT00390000008678 #32	ENSGT00950000182879.b.i	ENSGT00950000182879.b.j	ENSGT00940000159251 #34	ENSGT00390000017123.a	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489
Emydidae	ANCESTRAL SPECIES	22	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668.g #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00940000165098	ENSGT00390000008678 #32	ENSGT00950000182879.b.i	ENSGT00950000182879.b.j	ENSGT00940000159251 #34	ENSGT00390000017123.a	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	97	ENSTMTG00000019457	ENSTMTG00000020147	ENSTMTG00000020247	ENSTMTG00000021372	ENSTMTG00000021386	ENSTMTG00000021399 #7	ENSTMTG00000021422 #9	ENSTMTG00000021492 #10	ENSTMTG00000021497 #12	ENSTMTG00000021506 #14	ENSTMTG00000021518	ENSTMTG00000021539 #15	ENSTMTG00000021547 #16	ENSTMTG00000021552 #17	ENSTMTG00000021554 #19	ENSTMTG00000021690 #22	ENSTMTG00000022246 #23	ENSTMTG00000022250 #24	ENSTMTG00000022254 #25	ENSTMTG00000022270 #28	ENSTMTG00000022285 #29	ENSTMTG00000022290 #30	ENSTMTG00000022294	ENSTMTG00000022302
Three-toed box turtle	MODERN SPECIES	98	ENSTMTG00000011103	ENSTMTG00000012656	ENSTMTG00000013045	ENSTMTG00000016067	ENSTMTG00000016096	ENSTMTG00000016139 #7	ENSTMTG00000016205 #9	ENSTMTG00000016442 #10	ENSTMTG00000016476 #12	ENSTMTG00000016515 #14	ENSTMTG00000016529	ENSTMTG00000016541 #15	ENSTMTG00000016554 #16	ENSTMTG00000016568 #17	ENSTMTG00000016577 #19	ENSTMTG00000017136 #22	ENSTMTG00000021400 #23	ENSTMTG00000021413 #24	ENSTMTG00000021425 #25	ENSTMTG00000021437 #28	ENSTMTG00000021443 #28	ENSTMTG00000021463 #29	ENSTMTG00000021509 #30	ENSTMTG00000021657	ENSTMTG00000021677
painted turtle	MODERN SPECIES	698	ENSCPBG00000014252	MYSM1 (ENSCPBG00000014248) #37	OMA1 (ENSCPBG00000014247)	DAB1 (ENSCPBG00000014240)	C8B (ENSCPBG00000014239)	C8A (ENSCPBG00000014237)	ENSCPBG00000014235	PRKAA2 (ENSCPBG00000014232)	PLPP3 (ENSCPBG00000014230)	PGM1 (ENSCPBG00000014225) #14	EFCAB7 (ENSCPBG00000014221)	ITGB3BP (ENSCPBG00000014219) #15	ALG6 (ENSCPBG00000014218) #16	ATG4C (ENSCPBG00000014206) #19	ANGPTL3 (ENSCPBG00000014200) #23	DOCK7 (ENSCPBG00000014002) #22	USP1 (ENSCPBG00000013960) #24	KANK4 (ENSCPBG00000013958) #25	PATJ (ENSCPBG00000013956) #28	TM2D1 (ENSCPBG00000013955) #29	NFIA (ENSCPBG00000013953) #30	ENSCPBG00000013952	C1orf87 (ENSCPBG00000013949) #32	ENSCPBG00000013948	ENSCPBG00000013947	ENSCPBG00000013946	ENSCPBG00000013944
Testudinidae	ANCESTRAL SPECIES	33	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000155661 #22	ENSGT00940000156746 #23	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668.g #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00940000165098	ENSGT00390000008678 #32	ENSGT00950000182879.b.i	ENSGT00950000182879.b.j	ENSGT00940000159251 #34	ENSGT00390000017123.a	ENSGT01000000214434.F #35	ENSGT00940000175231	ENSGT00940000162061 #36
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	1894							CACHD1 (ENSCABG00000023111) #9	UBE2U (ENSCABG00000023112) #10	ROR1 (ENSCABG00000023113) #12	PGM1 (ENSCABG00000023115) #14	EFCAB7 (ENSCABG00000023116)	ENSCABG00000023117 #15	ALG6 (ENSCABG00000023118) #16	FOXD3 (ENSCABG00000023119) #17	ATG4C (ENSCABG00000023120) #19	ENSCABG00000023121 #22	ANGPTL3 (ENSCABG00000023122) #23	ENSCABG00000023123 #22	ENSCABG00000023124 #22	USP1 (ENSCABG00000023125) #24	KANK4 (ENSCABG00000023126) #25	PATJ (ENSCABG00000023127) #28	TM2D1 (ENSCABG00000023128) #29	NFIA (ENSCABG00000023129) #30	ENSCABG00000023132	PREB (ENSCABG00000023133)	ENSCABG00000023135	C1orf87 (ENSCABG00000023136) #32	ENSCABG00000023137
Abingdon island giant tortoise	MODERN SPECIES	1894					CACHD1 (ENSCABG00000023111) #9	UBE2U (ENSCABG00000023112) #10	ROR1 (ENSCABG00000023113) #12	PGM1 (ENSCABG00000023115) #14	EFCAB7 (ENSCABG00000023116)	ENSCABG00000023117 #15	ALG6 (ENSCABG00000023118) #16	FOXD3 (ENSCABG00000023119) #17	ATG4C (ENSCABG00000023120) #19	ENSCABG00000023121 #22	ANGPTL3 (ENSCABG00000023122) #23	ENSCABG00000023123 #22	ENSCABG00000023124 #22	USP1 (ENSCABG00000023125) #24	KANK4 (ENSCABG00000023126) #25	PATJ (ENSCABG00000023127) #28	TM2D1 (ENSCABG00000023128) #29	NFIA (ENSCABG00000023129) #30	ENSCABG00000023132	PREB (ENSCABG00000023133)	ENSCABG00000023135	C1orf87 (ENSCABG00000023136) #32	ENSCABG00000023137
Abingdon island giant tortoise	MODERN SPECIES	1894				CACHD1 (ENSCABG00000023111) #9	UBE2U (ENSCABG00000023112) #10	ROR1 (ENSCABG00000023113) #12	PGM1 (ENSCABG00000023115) #14	EFCAB7 (ENSCABG00000023116)	ENSCABG00000023117 #15	ALG6 (ENSCABG00000023118) #16	FOXD3 (ENSCABG00000023119) #17	ATG4C (ENSCABG00000023120) #19	ENSCABG00000023121 #22	ANGPTL3 (ENSCABG00000023122) #23	ENSCABG00000023123 #22	ENSCABG00000023124 #22	USP1 (ENSCABG00000023125) #24	KANK4 (ENSCABG00000023126) #25	PATJ (ENSCABG00000023127) #28	TM2D1 (ENSCABG00000023128) #29	NFIA (ENSCABG00000023129) #30	ENSCABG00000023132	PREB (ENSCABG00000023133)	ENSCABG00000023135	C1orf87 (ENSCABG00000023136) #32	ENSCABG00000023137
Goode s thornscrub tortoise	MODERN SPECIES	22	LEPR (ENSGEVG00005007099)	LEPROT (ENSGEVG00005007695)	DNAJC6 (ENSGEVG00005008265)	ENSGEVG00005011475	JAK1 (ENSGEVG00005011508)	RAVER2 (ENSGEVG00005011582) #7	CACHD1 (ENSGEVG00005011807) #9	UBE2U (ENSGEVG00005012901) #10	ROR1 (ENSGEVG00005012980) #12	PGM1 (ENSGEVG00005013164) #14	EFCAB7 (ENSGEVG00005013265)	ITGB3BP (ENSGEVG00005013329) #15	ALG6 (ENSGEVG00005013369) #16	FOXD3 (ENSGEVG00005013403) #17	ATG4C (ENSGEVG00005013428) #19	DOCK7 (ENSGEVG00005016039) #22	ANGPTL3 (ENSGEVG00005020668) #23	USP1 (ENSGEVG00005020673) #24	ENSGEVG00005020678 #25	PATJ (ENSGEVG00005020682) #28	TM2D1 (ENSGEVG00005020691) #29	NFIA (ENSGEVG00005020696) #30	ENSGEVG00005020704	C1orf87 (ENSGEVG00005020715) #32	ENSGEVG00005020724	ENSGEVG00005020736	ENSGEVG00005020753	ENSGEVG00005020762	ENSGEVG00005020776	ENSGEVG00005020795	HOOK1 (ENSGEVG00005020811) #34
Chinese turtle	MODERN SPECIES	1322															ATG4C (ENSPSIG00000013481) #19	DOCK7 (ENSPSIG00000013971) #22	ANGPTL3 (ENSPSIG00000016440) #23	USP1 (ENSPSIG00000016572) #24	KANK4 (ENSPSIG00000016625) #25	ENSPSIG00000016872	PRKAR2A (ENSPSIG00000017020)	RPP14 (ENSPSIG00000017212)	HTD2 (ENSPSIG00000005016)	PXK (ENSPSIG00000005046)	PDHB (ENSPSIG00000005492)	KCTD6 (ENSPSIG00000005628)	ACOX2 (ENSPSIG00000005738)	ENSPSIG00000006377	FAM3D (ENSPSIG00000006380)	CFAP20DC (ENSPSIG00000006406)	ENSPSIG00000000970
Archosauria	ANCESTRAL SPECIES	11	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00950000182879.b.i	ENSGT00950000182879.b.j	ENSGT00940000159251 #34	ENSGT00390000017123.a	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Australian saltwater crocodile	MODERN SPECIES	28	LEPROT (ENSCPRG00005011093)	DNAJC6 (ENSCPRG00005011081)	ENSCPRG00005011074	JAK1 (ENSCPRG00005011063)	RAVER2 (ENSCPRG00005011054) #7	CACHD1 (ENSCPRG00005011034) #9	UBE2U (ENSCPRG00005011024) #10	ROR1 (ENSCPRG00005011020) #12	PGM1 (ENSCPRG00005011014) #14	EFCAB7 (ENSCPRG00005011001)	ENSCPRG00005010995	ALG6 (ENSCPRG00005010969) #16	ATG4C (ENSCPRG00005010945) #19	ENSCPRG00005010941	ANGPTL3 (ENSCPRG00005010939) #23	DOCK7 (ENSCPRG00005006744) #22	USP1 (ENSCPRG00005006270) #24	KANK4 (ENSCPRG00005006242) #25	ENSCPRG00005006180 #28	ENSCPRG00005006132 #28	TM2D1 (ENSCPRG00005006123) #29	NFIA (ENSCPRG00005006091) #30	ENSCPRG00005006037	HOOK1 (ENSCPRG00005006021) #34	ENSCPRG00005006015	ENSCPRG00005006012	ENSCPRG00005006008	FGGY (ENSCPRG00005005982) #35	JUN (ENSCPRG00005005941) #36	ENSCPRG00005005915	MYSM1 (ENSCPRG00005005893) #37
Aves	ANCESTRAL SPECIES	7	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000162256 #10	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00950000182879.b.i	ENSGT00950000182879.b.j	ENSGT00940000159251 #34	ENSGT00390000017123.a	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
African ostrich	MODERN SPECIES	220	LEPR (ENSSCUG00000004230)	LEPROT (ENSSCUG00000004226)	DNAJC6 (ENSSCUG00000004221)	JAK1 (ENSSCUG00000004212)	RAVER2 (ENSSCUG00000004209) #7	CACHD1 (ENSSCUG00000004203) #9	UBE2U (ENSSCUG00000004193) #10	ROR1 (ENSSCUG00000004189) #12	PGM1 (ENSSCUG00000004179) #14	EFCAB7 (ENSSCUG00000004175)	ALG6 (ENSSCUG00000004174) #16	ITGB3BP (ENSSCUG00000004172) #15	ENSSCUG00000004171	ATG4C (ENSSCUG00000004168) #19	ANGPTL3 (ENSSCUG00000004167) #23	DOCK7 (ENSSCUG00000004056) #22	USP1 (ENSSCUG00000003948) #24	KANK4 (ENSSCUG00000003944) #25	PATJ (ENSSCUG00000003939) #28	TM2D1 (ENSSCUG00000003936) #29	NFIA (ENSSCUG00000003935) #30	ENSSCUG00000003930	ENSSCUG00000003927	HOOK1 (ENSSCUG00000003921) #34	ENSSCUG00000003902	FGGY (ENSSCUG00000003894) #35	JUN (ENSSCUG00000003887) #36	ENSSCUG00000003874	MYSM1 (ENSSCUG00000003863) #37
Neognathae	ANCESTRAL SPECIES	8	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00950000182879.b.i	ENSGT00950000182879.b.j	ENSGT00940000159251 #34	ENSGT00390000017123.a	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Galloanserae	ANCESTRAL SPECIES	8	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00950000182879.b.i	ENSGT00950000182879.b.j	ENSGT00940000159251 #34	ENSGT00390000017123.a	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Anatidae	ANCESTRAL SPECIES	5	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00950000182879.b.i	ENSGT00950000182879.b.j	ENSGT00940000159251 #34	ENSGT00390000017123.a	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489.c	ENSGT00940000157721 #37	ENSGT00390000007027	ENSGT00940000158038.h
Pink-footed goose	MODERN SPECIES	1	LEPROT (ENSABRG00000018309)	DNAJC6 (ENSABRG00000018320)	ENSABRG00000018350	ENSABRG00000018361	JAK1 (ENSABRG00000018398)	RAVER2 (ENSABRG00000018443) #7	CACHD1 (ENSABRG00000018462) #9	ROR1 (ENSABRG00000018481) #12	PGM1 (ENSABRG00000018513) #14	EFCAB7 (ENSABRG00000018592)	ITGB3BP (ENSABRG00000018646) #15	ALG6 (ENSABRG00000018752) #16	FOXD3 (ENSABRG00000019027) #17	ENSABRG00000019030	ATG4C (ENSABRG00000019118) #19	DOCK7 (ENSABRG00000019817) #22	ANGPTL3 (ENSABRG00000022210) #23	USP1 (ENSABRG00000022213) #24	KANK4 (ENSABRG00000022228) #25	PATJ (ENSABRG00000022286) #28	TM2D1 (ENSABRG00000022358) #29	NFIA (ENSABRG00000022372) #30	ENSABRG00000022451	ENSABRG00000022457	HOOK1 (ENSABRG00000022460) #34	ENSABRG00000022462	FGGY (ENSABRG00000022463) #35	JUN (ENSABRG00000022465) #36	ENSABRG00000022468	MYSM1 (ENSABRG00000022470) #37	OMA1 (ENSABRG00000022473)
Duck	DUPLICATION
Duck	MODERN SPECIES	26	LEPR (ENSAPLG00000015902)	LEPROT (ENSAPLG00000029613)	DNAJC6 (ENSAPLG00000015954)	ENSAPLG00000007058	JAK1 (ENSAPLG00000012047)	RAVER2 (ENSAPLG00000013160) #7	CACHD1 (ENSAPLG00000013355) #9	ROR1 (ENSAPLG00000013960) #12	PGM1 (ENSAPLG00000014087) #14	EFCAB7 (ENSAPLG00000014663)	ITGB3BP (ENSAPLG00000014813) #15	ALG6 (ENSAPLG00000014868) #16	ATG4C (ENSAPLG00000015314) #19	ANGPTL3 (ENSAPLG00000001634) #23	ENSAPLG00000015722 #22	ENSAPLG00000021191 #22	USP1 (ENSAPLG00000002578) #24	ENSAPLG00000016679 #28	ENSAPLG00000002853 #28	TM2D1 (ENSAPLG00000003403) #29	NFIA (ENSAPLG00000003407) #30	ENSAPLG00000003768	ENSAPLG00000003769	HOOK1 (ENSAPLG00000004631) #34	ENSAPLG00000005578	ENSAPLG00000030318	FGGY (ENSAPLG00000005579) #35	JUN (ENSAPLG00000028301) #36	ENSAPLG00000024240	ENSAPLG00000025227	MYSM1 (ENSAPLG00000006062) #37
Duck	MODERN SPECIES	26	PDE4B (ENSAPLG00000007240)	LEPR (ENSAPLG00000015902)	LEPROT (ENSAPLG00000029613)	DNAJC6 (ENSAPLG00000015954)	ENSAPLG00000007058	JAK1 (ENSAPLG00000012047)	RAVER2 (ENSAPLG00000013160) #7	CACHD1 (ENSAPLG00000013355) #9	ROR1 (ENSAPLG00000013960) #12	PGM1 (ENSAPLG00000014087) #14	EFCAB7 (ENSAPLG00000014663)	ITGB3BP (ENSAPLG00000014813) #15	ALG6 (ENSAPLG00000014868) #16	ATG4C (ENSAPLG00000015314) #19	ANGPTL3 (ENSAPLG00000001634) #23	ENSAPLG00000015722 #22	ENSAPLG00000021191 #22	USP1 (ENSAPLG00000002578) #24	ENSAPLG00000016679 #28	ENSAPLG00000002853 #28	TM2D1 (ENSAPLG00000003403) #29	NFIA (ENSAPLG00000003407) #30	ENSAPLG00000003768	ENSAPLG00000003769	HOOK1 (ENSAPLG00000004631) #34	ENSAPLG00000005578	ENSAPLG00000030318	FGGY (ENSAPLG00000005579) #35	JUN (ENSAPLG00000028301) #36	ENSAPLG00000024240	ENSAPLG00000025227
Phasianidae	ANCESTRAL SPECIES	7	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092.e	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00950000182879.b.i	ENSGT00950000182879.b.j.g.a.a	ENSGT00950000182879.b.j.g.a.b.a	ENSGT00940000159251 #34	ENSGT00390000017123.a	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489	ENSGT00940000157721 #37	ENSGT00390000018245.d
Japanese quail	MODERN SPECIES	26	LEPROT (ENSCJPG00005014501)	DNAJC6 (ENSCJPG00005014500)	ENSCJPG00005014499	ENSCJPG00005014497	JAK1 (ENSCJPG00005014496)	RAVER2 (ENSCJPG00005014495) #7	CACHD1 (ENSCJPG00005014494) #9	ROR1 (ENSCJPG00005014492) #12	PGM1 (ENSCJPG00005014491) #14	EFCAB7 (ENSCJPG00005014490)	ENSCJPG00005014489 #15	ALG6 (ENSCJPG00005014488) #16	FOXD3 (ENSCJPG00005014487) #17	ATG4C (ENSCJPG00005014485) #19	ANGPTL3 (ENSCJPG00005014484) #23	DOCK7 (ENSCJPG00005012616) #22	USP1 (ENSCJPG00005012615) #24	KANK4 (ENSCJPG00005012614) #25	ENSCJPG00005012612 #28	ENSCJPG00005012431 #28	TM2D1 (ENSCJPG00005012430) #29	NFIA (ENSCJPG00005012429) #30	ENSCJPG00005012428	ENSCJPG00005012427	ENSCJPG00005012426	ENSCJPG00005012425	ENSCJPG00005012424	ENSCJPG00005012423	HOOK1 (ENSCJPG00005012422) #34	ENSCJPG00005012421	FGGY (ENSCJPG00005012420) #35
Phasianidae_b	ANCESTRAL SPECIES	7	ENSGT00390000018600	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092.e	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a.s #30	ENSGT00950000182879.b.i	ENSGT00950000182879.b.j.g.a.a	ENSGT00950000182879.b.j.g.a.b.a	ENSGT00950000182879.b.j.g.b	ENSGT00940000159251 #34	ENSGT00390000017123.a	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000157721 #37	ENSGT00390000018245.d
Chicken	MODERN SPECIES	37	ENSGALG00010024171	LEPR (ENSGALG00010024165)	LEPROT (ENSGALG00010024151)	DNAJC6 (ENSGALG00010024142)	ENSGALG00010024132	JAK1 (ENSGALG00010024493)	RAVER2 (ENSGALG00010024473) #7	CACHD1 (ENSGALG00010024449) #9	ROR1 (ENSGALG00010024399) #12	PGM1 (ENSGALG00010024350) #14	EFCAB7 (ENSGALG00010024332)	ITGB3BP (ENSGALG00010024277) #15	ALG6 (ENSGALG00010024192) #16	ATG4C (ENSGALG00010024179) #19	ANGPTL3 (ENSGALG00010023885) #23	DOCK7 (ENSGALG00010023869) #22	USP1 (ENSGALG00010023829) #24	KANK4 (ENSGALG00010023821) #25	PATJ (ENSGALG00010023806) #28	TM2D1 (ENSGALG00010023732) #29	NFIA (ENSGALG00010024816) #30	ENSGALG00010026928	ENSGALG00010027108	ENSGALG00010026909	CYP2J23 (ENSGALG00010027106)	HOOK1 (ENSGALG00010026899) #34	ENSGALG00010026889	JUN (ENSGALG00010026886) #36	ENSGALG00010026870	FGGY (ENSGALG00010026839) #35	MYSM1 (ENSGALG00010026780) #37
Turkey	DUPLICATION
Turkey	DUPLICATION
Turkey	MODERN SPECIES	1	ENSMGAG00000022840	ENSMGAG00000011514 #37	ENSMGAG00000022327	FGGY (ENSMGAG00000011533) #35	ENSMGAG00000018463	ENSMGAG00000011548 #34	ENSMGAG00000018263	ENSMGAG00000011590	ENSMGAG00000021749	ENSMGAG00000018319	ENSMGAG00000021571 #30	ENSMGAG00000011639 #30	ENSMGAG00000011647 #29	ENSMGAG00000011649 #28	ENSMGAG00000011680 #25	ENSMGAG00000021436 #22	ENSMGAG00000011724 #24	ENSMGAG00000011689 #22	ENSMGAG00000011732 #23	ENSMGAG00000021523 #22	ATG4C (ENSMGAG00000011740) #19	ENSMGAG00000017106 #15	ENSMGAG00000011751 #16	EFCAB7 (ENSMGAG00000011762)	ENSMGAG00000011767 #14	ENSMGAG00000011783 #12	CACHD1 (ENSMGAG00000011794) #9	ENSMGAG00000011807	ENSMGAG00000011806 #7	ENSMGAG00000022771	ENSMGAG00000011832
Turkey	MODERN SPECIES	1	ENSMGAG00000018463	ENSMGAG00000011548 #34	ENSMGAG00000018263	ENSMGAG00000011590	ENSMGAG00000021749	ENSMGAG00000018319	ENSMGAG00000021571 #30	ENSMGAG00000011639 #30	ENSMGAG00000011647 #29	ENSMGAG00000011649 #28	ENSMGAG00000011680 #25	ENSMGAG00000021436 #22	ENSMGAG00000011724 #24	ENSMGAG00000011689 #22	ENSMGAG00000011732 #23	ENSMGAG00000021523 #22	ATG4C (ENSMGAG00000011740) #19	ENSMGAG00000017106 #15	ENSMGAG00000011751 #16	EFCAB7 (ENSMGAG00000011762)	ENSMGAG00000011767 #14	ENSMGAG00000011783 #12	CACHD1 (ENSMGAG00000011794) #9	ENSMGAG00000011807	ENSMGAG00000011806 #7	ENSMGAG00000022771	ENSMGAG00000011832	LEPROT (ENSMGAG00000011858)	ENSMGAG00000011841	LEPR (ENSMGAG00000011860)	ENSMGAG00000020412
Turkey	MODERN SPECIES	1	ENSMGAG00000022327	FGGY (ENSMGAG00000011533) #35	ENSMGAG00000018463	ENSMGAG00000011548 #34	ENSMGAG00000018263	ENSMGAG00000011590	ENSMGAG00000021749	ENSMGAG00000018319	ENSMGAG00000021571 #30	ENSMGAG00000011639 #30	ENSMGAG00000011647 #29	ENSMGAG00000011649 #28	ENSMGAG00000011680 #25	ENSMGAG00000021436 #22	ENSMGAG00000011724 #24	ENSMGAG00000011689 #22	ENSMGAG00000011732 #23	ENSMGAG00000021523 #22	ATG4C (ENSMGAG00000011740) #19	ENSMGAG00000017106 #15	ENSMGAG00000011751 #16	EFCAB7 (ENSMGAG00000011762)	ENSMGAG00000011767 #14	ENSMGAG00000011783 #12	CACHD1 (ENSMGAG00000011794) #9	ENSMGAG00000011807	ENSMGAG00000011806 #7	ENSMGAG00000022771	ENSMGAG00000011832	LEPROT (ENSMGAG00000011858)	ENSMGAG00000011841
Neognathae_b	ANCESTRAL SPECIES	10	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00950000182879.b.i	ENSGT00950000182879.b.j	ENSGT00940000159251 #34	ENSGT00390000017123.a	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Neognathae_c	ANCESTRAL SPECIES	7	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00950000182879.b.i	ENSGT00950000182879.b.j	ENSGT00940000159251 #34	ENSGT00390000017123.a	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Golden eagle	MODERN SPECIES	3	LEPROT (ENSACCG00020017049)	DNAJC6 (ENSACCG00020017048)	ENSACCG00020017047	JAK1 (ENSACCG00020017045)	RAVER2 (ENSACCG00020017044) #7	CACHD1 (ENSACCG00020017043) #9	ROR1 (ENSACCG00020017042) #12	PGM1 (ENSACCG00020017041) #14	EFCAB7 (ENSACCG00020017040)	ITGB3BP (ENSACCG00020017039) #15	ALG6 (ENSACCG00020017038) #16	FOXD3 (ENSACCG00020017037) #17	ENSACCG00020017036	ATG4C (ENSACCG00020017035) #19	ANGPTL3 (ENSACCG00020017034) #23	DOCK7 (ENSACCG00020017033) #22	USP1 (ENSACCG00020017032) #24	KANK4 (ENSACCG00020017031) #25	PATJ (ENSACCG00020017030) #28	TM2D1 (ENSACCG00020017029) #29	NFIA (ENSACCG00020017028) #30	ENSACCG00020017026	ENSACCG00020017025	HOOK1 (ENSACCG00020017024) #34	ENSACCG00020017023	FGGY (ENSACCG00020017022) #35	JUN (ENSACCG00020017021) #36	ENSACCG00020017020	MYSM1 (ENSACCG00020017019) #37	TACSTD2 (ENSACCG00020017018)	OMA1 (ENSACCG00020017017)
Kakapo	MODERN SPECIES	25	LEPR (ENSSHBG00005015452)	LEPROT (ENSSHBG00005015439)	DNAJC6 (ENSSHBG00005015435)	ENSSHBG00005015430	JAK1 (ENSSHBG00005012461)	RAVER2 (ENSSHBG00005012257) #7	CACHD1 (ENSSHBG00005012051) #9	ROR1 (ENSSHBG00005011980) #12	PGM1 (ENSSHBG00005011955) #14	EFCAB7 (ENSSHBG00005011937)	ITGB3BP (ENSSHBG00005011923) #15	ALG6 (ENSSHBG00005011906) #16	FOXD3 (ENSSHBG00005011888) #17	ENSSHBG00005011870 #19	ANGPTL3 (ENSSHBG00005011851) #23	DOCK7 (ENSSHBG00005011629) #22	USP1 (ENSSHBG00005011553) #24	KANK4 (ENSSHBG00005011530) #25	PATJ (ENSSHBG00005007846) #28	TM2D1 (ENSSHBG00005007443) #29	NFIA (ENSSHBG00005007257) #30	ENSSHBG00005007122	ENSSHBG00005007084	ENSSHBG00005007065	ENSSHBG00005007019	HOOK1 (ENSSHBG00005006978) #34	FGGY (ENSSHBG00005006852) #35	JUN (ENSSHBG00005006800) #36	ENSSHBG00005006745	MYSM1 (ENSSHBG00005006699) #37	OMA1 (ENSSHBG00005006681)
Passeriformes	ANCESTRAL SPECIES	8	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00950000182879.b.i	ENSGT00950000182879.b.j	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027	ENSGT00940000158038
Great tit	MODERN SPECIES	28	DNAJC6 (ENSPMJG00000012346)	ENSPMJG00000012345	JAK1 (ENSPMJG00000012343)	RAVER2 (ENSPMJG00000012342) #7	CACHD1 (ENSPMJG00000012341) #9	ENSPMJG00000012339	ROR1 (ENSPMJG00000012338) #12	ENSPMJG00000012337	PGM1 (ENSPMJG00000012336) #14	EFCAB7 (ENSPMJG00000012335)	ITGB3BP (ENSPMJG00000012333) #15	ALG6 (ENSPMJG00000012332) #16	FOXD3 (ENSPMJG00000012331) #17	ATG4C (ENSPMJG00000012330) #19	ANGPTL3 (ENSPMJG00000012329) #23	DOCK7 (ENSPMJG00000004670) #22	USP1 (ENSPMJG00000004620) #24	KANK4 (ENSPMJG00000004587) #25	PATJ (ENSPMJG00000003672) #28	TM2D1 (ENSPMJG00000003648) #29	NFIA (ENSPMJG00000003614) #30	ENSPMJG00000003577	ENSPMJG00000003575	HOOK1 (ENSPMJG00000003572) #34	FGGY (ENSPMJG00000003463) #35	JUN (ENSPMJG00000003457) #36	ENSPMJG00000003443	MYSM1 (ENSPMJG00000003434) #37	TACSTD2 (ENSPMJG00000003433)	OMA1 (ENSPMJG00000003416)	ENSPMJG00000003410
Passeriformes_d	ANCESTRAL SPECIES	9	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568.f	ENSGT00940000157092	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT01040000244779	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00950000182879.b.i.e.a	ENSGT00950000182879.b.i.f	ENSGT00950000182879.b.j	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489	ENSGT00940000157721 #37	ENSGT00390000018245.d
Flycatcher	MODERN SPECIES	27	LEPROT (ENSFALG00000012714)	ENSFALG00000024596	DNAJC6 (ENSFALG00000012679)	ENSFALG00000027823	JAK1 (ENSFALG00000012645)	ENSFALG00000024415 #7	ENSFALG00000026307 #7	CACHD1 (ENSFALG00000012622) #9	ROR1 (ENSFALG00000012605) #12	PGM1 (ENSFALG00000025774) #14	EFCAB7 (ENSFALG00000012572)	ITGB3BP (ENSFALG00000012567) #15	ALG6 (ENSFALG00000012546) #16	ATG4C (ENSFALG00000012535) #19	ANGPTL3 (ENSFALG00000027664) #23	DOCK7 (ENSFALG00000012509) #22	USP1 (ENSFALG00000012495) #24	ENSFALG00000012483 #25	PATJ (ENSFALG00000012456) #28	TM2D1 (ENSFALG00000026390) #29	ENSFALG00000028412	NFIA (ENSFALG00000012430) #30	ENSFALG00000022904	ENSFALG00000012427	ENSFALG00000026411	ENSFALG00000012418	HOOK1 (ENSFALG00000012380) #34	FGGY (ENSFALG00000012370) #35	JUN (ENSFALG00000015113) #36	ENSFALG00000028195	MYSM1 (ENSFALG00000012350) #37
Passeriformes_g	ANCESTRAL SPECIES	10	ENSGT00390000006503.a	ENSGT00940000158755	ENSGT00940000154568.f	ENSGT00940000154568.e	ENSGT00940000157092.g	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT01040000244779	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00950000182879.b.i.e.a	ENSGT00950000182879.b.i.f	ENSGT00950000182879.b.j	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489	ENSGT00940000157721 #37	ENSGT00390000018245.d
Medium ground finch	MODERN SPECIES	48					JAK1 (ENSGFOG00000013489)	RAVER2 (ENSGFOG00000013479) #7	CACHD1 (ENSGFOG00000013471) #9	ENSGFOG00000013469	ROR1 (ENSGFOG00000013466) #12	PGM1 (ENSGFOG00000013462) #14	EFCAB7 (ENSGFOG00000013457)	ITGB3BP (ENSGFOG00000013448) #15	ALG6 (ENSGFOG00000013434) #16	ATG4C (ENSGFOG00000013423) #19	ANGPTL3 (ENSGFOG00000013418) #23	DOCK7 (ENSGFOG00000002582) #22	USP1 (ENSGFOG00000001581) #24	KANK4 (ENSGFOG00000001572) #25	ENSGFOG00000001548 #28	ENSGFOG00000001494 #28	TM2D1 (ENSGFOG00000001485) #29	NFIA (ENSGFOG00000001410) #30	ENSGFOG00000001322	ENSGFOG00000001304	HOOK1 (ENSGFOG00000000932) #34	FGGY (ENSGFOG00000000837) #35	JUN (ENSGFOG00000000830) #36	ENSGFOG00000000789	MYSM1 (ENSGFOG00000000763) #37	TACSTD2 (ENSGFOG00000000755)	OMA1 (ENSGFOG00000000743)
Passeroidea	ANCESTRAL SPECIES	9	ENSGT00390000006503.a	ENSGT00940000158755.o	ENSGT00940000154568.f	ENSGT00940000154568.e	ENSGT00940000157092.g	ENSGT00940000158648 #7	ENSGT00940000157568 #9	ENSGT00940000153947.B #12	ENSGT00940000155542.b #14	ENSGT00390000015466	ENSGT00390000004336 #15	ENSGT00940000153733.B #16	ENSGT00940000161645.b #17	ENSGT00530000063000.a.a.a #19	ENSGT00940000156746 #23	ENSGT00940000155661 #22	ENSGT00910000144243 #24	ENSGT00940000158468 #25	ENSGT00940000155136 #28	ENSGT00940000157668 #29	ENSGT01040000244779	ENSGT00950000182916.a.b.a.a.a.a #30	ENSGT00950000182879.b.i.e.a	ENSGT00950000182879.b.j	ENSGT00940000159251 #34	ENSGT01000000214434.F #35	ENSGT00940000162061 #36	ENSGT00940000165489	ENSGT00940000157721 #37	ENSGT00390000018245.d	ENSGT00390000007027
Zebra finch	MODERN SPECIES	30	ENSTGUG00000010011	ENSTGUG00000010010	ENSTGUG00000029078	ENSTGUG00000009973 #7	ENSTGUG00000009951 #9	ENSTGUG00000023239 #12	ENSTGUG00000009917 #14	ENSTGUG00000028636	ENSTGUG00000009942 #12	PGM1 (ENSTGUG00000018846) #14	ENSTGUG00000009906	ENSTGUG00000009904 #15	ALG6 (ENSTGUG00000009888) #16	FOXD3 (ENSTGUG00000028147) #17	ATG4C (ENSTGUG00000009870) #19	DOCK7 (ENSTGUG00000009812) #22	ANGPTL3 (ENSTGUG00000009863) #23	USP1 (ENSTGUG00000009799) #24	ENSTGUG00000028251 #25	ENSTGUG00000023986 #25	PATJ (ENSTGUG00000009783) #28	TM2D1 (ENSTGUG00000009771) #29	NFIA (ENSTGUG00000009745) #30	ENSTGUG00000027591	ENSTGUG00000013940	ENSTGUG00000016903	ENSTGUG00000009722	HOOK1 (ENSTGUG00000009700) #34	FGGY (ENSTGUG00000009695) #35	JUN (ENSTGUG00000009693) #36	ENSTGUG00000022171
Common canary	MODERN SPECIES	9	DNAJC6 (ENSSCAG00000006996)	ENSSCAG00000006982	ROR1 (ENSSCAG00000006973) #12	ENSSCAG00000006966	RAVER2 (ENSSCAG00000006952) #7	CACHD1 (ENSSCAG00000006858) #9	ENSSCAG00000006829	ENSSCAG00000006819	PGM1 (ENSSCAG00000006814) #14	EFCAB7 (ENSSCAG00000006806)	ITGB3BP (ENSSCAG00000006795) #15	ALG6 (ENSSCAG00000006788) #16	FOXD3 (ENSSCAG00000006785) #17	ATG4C (ENSSCAG00000006779) #19	ANGPTL3 (ENSSCAG00000006769) #23	DOCK7 (ENSSCAG00000006729) #22	USP1 (ENSSCAG00000006713) #24	ENSSCAG00000006704 #25	PATJ (ENSSCAG00000006679) #28	TM2D1 (ENSSCAG00000006671) #29	NFIA (ENSSCAG00000006651) #30	ENSSCAG00000006630	ENSSCAG00000006628	HOOK1 (ENSSCAG00000006621) #34	FGGY (ENSSCAG00000006601) #35	JUN (ENSSCAG00000006591) #36	ENSSCAG00000006589	ENSSCAG00000006585	ENSSCAG00000006582	MYSM1 (ENSSCAG00000006576) #37	TACSTD2 (ENSSCAG00000006574)