Murinae	ANCESTRAL SPECIES	2	ENSGT00950000182802.B.a.a.a.a.i.b ##8	ENSGT00940000159314 #9	ENSGT00940000155194 #10	ENSGT00390000013174 #11	ENSGT00940000156585 #12	ENSGT01090000260040.b.b.b.a #13	ENSGT00950000183172.B #14	ENSGT00390000004191 #15	ENSGT00390000015719.c #16	ENSGT00940000155361 #17	ENSGT00900000143263	ENSGT00390000016565 #18	ENSGT00390000017418 #19	ENSGT00940000160747 #20	ENSGT00940000156338 #21	ENSGT00950000182900.B #22	ENSGT00390000007371 #23	ENSGT00940000160932 #24	ENSGT00940000159398 #25	ENSGT00530000063929.a.b #26	ENSGT01060000248564.b.a.a.a #27	ENSGT00950000182962.b.a #28	ENSGT00390000018883 #29	ENSGT00940000157554 #30	ENSGT00940000160073 #31	ENSGT01000000214440.A.a.b.a #32	ENSGT00940000156115 #33	ENSGT00530000063770.c.a #34	ENSGT00390000010045 #35	ENSGT00950000183182.a.a #36	ENSGT01090000260093.b #37
Mus	ANCESTRAL SPECIES	3	ENSGT00950000182802.B.a.a.a.a.i.b ##8	ENSGT00940000159314 #9	ENSGT00940000155194 #10	ENSGT00390000013174 #11	ENSGT00940000156585 #12	ENSGT01090000260040.b.b.b.a #13	ENSGT00950000183172.B #14	ENSGT00390000004191 #15	ENSGT00390000015719.c #16	ENSGT00940000155361 #17	ENSGT00900000143263	ENSGT00390000016565 #18	ENSGT00390000017418 #19	ENSGT00940000160747 #20	ENSGT00940000156338 #21	ENSGT00950000182900.B #22	ENSGT00390000007371 #23	ENSGT00940000160932 #24	ENSGT00940000159398 #25	ENSGT00530000063929.a.b #26	ENSGT01060000248564.b.a.a.a #27	ENSGT00950000182962.b.a #28	ENSGT00390000018883 #29	ENSGT00940000157554 #30	ENSGT00940000160073 #31	ENSGT01000000214440.A.a.b.a #32	ENSGT00940000156115 #33	ENSGT00530000063770.c.a #34	ENSGT00390000010045 #35	ENSGT00950000183182.a.a #36	ENSGT01090000260093.b #37
Shrew mouse	MODERN SPECIES	19	Dhdds (MGP_PahariEiJ_G0028935) #7	MGP_PahariEiJ_G0028934 #8	Rps6ka1 (MGP_PahariEiJ_G0028933) #9	Arid1a (MGP_PahariEiJ_G0028932) #10	Pigv (MGP_PahariEiJ_G0028931) #11	MGP_PahariEiJ_G0028930 #12	Sfn (MGP_PahariEiJ_G0028929) #13	Gpn2 (MGP_PahariEiJ_G0028928) #14	Gpatch3 (MGP_PahariEiJ_G0028927) #15	Nr0b2 (MGP_PahariEiJ_G0028926) #16	Nudc (MGP_PahariEiJ_G0028925) #17	Kdf1 (MGP_PahariEiJ_G0028924) #18	Trnp1 (MGP_PahariEiJ_G0028923) #19	Tent5b (MGP_PahariEiJ_G0028922) #20	Slc9a1 (MGP_PahariEiJ_G0028921) #21	Wdtc1 (MGP_PahariEiJ_G0028920) #22	Tmem222 (MGP_PahariEiJ_G0028919) #23	Sytl1 (MGP_PahariEiJ_G0028918) #24	Map3k6 (MGP_PahariEiJ_G0028917) #25	Cd164l2 (MGP_PahariEiJ_G0028916) #26	Gpr3 (MGP_PahariEiJ_G0028915) #27	Wasf2 (MGP_PahariEiJ_G0028914) #28	Ahdc1 (MGP_PahariEiJ_G0028913) #29	Fgr (MGP_PahariEiJ_G0028912) #30	Fam76a (MGP_PahariEiJ_G0028911) #31	MGP_PahariEiJ_G0028910 #32	Ppp1r8 (MGP_PahariEiJ_G0028909) #33	Themis2 (MGP_PahariEiJ_G0028908) #34	Rpa2 (MGP_PahariEiJ_G0028907) #35	Smpdl3b (MGP_PahariEiJ_G0028906) #36	Xkr8 (MGP_PahariEiJ_G0028905) #37
Mus_A	ANCESTRAL SPECIES	3	ENSGT00950000182802.B.a.a.a.a.i.b ##8	ENSGT00940000159314 #9	ENSGT00940000155194 #10	ENSGT00390000013174 #11	ENSGT00940000156585 #12	ENSGT01090000260040.b.b.b.a #13	ENSGT00950000183172.B #14	ENSGT00390000004191 #15	ENSGT00390000015719.c #16	ENSGT00940000155361 #17	ENSGT00900000143263	ENSGT00390000016565 #18	ENSGT00390000017418 #19	ENSGT00940000160747 #20	ENSGT00940000156338 #21	ENSGT00950000182900.B #22	ENSGT00390000007371 #23	ENSGT00940000160932 #24	ENSGT00940000159398 #25	ENSGT00530000063929.a.b #26	ENSGT01060000248564.b.a.a.a #27	ENSGT00950000182962.b.a #28	ENSGT00390000018883 #29	ENSGT00940000157554 #30	ENSGT00940000160073 #31	ENSGT01000000214440.A.a.b.a #32	ENSGT00940000156115 #33	ENSGT00530000063770.c.a #34	ENSGT00390000010045 #35	ENSGT00950000183182.a.a #36	ENSGT01090000260093.b #37
Mus_B	ANCESTRAL SPECIES	5	ENSGT00950000182802.B.a.a.a.a.i.b ##8	ENSGT00940000159314 #9	ENSGT00940000155194 #10	ENSGT00390000013174 #11	ENSGT00940000156585 #12	ENSGT01090000260040.b.b.b.a #13	ENSGT00950000183172.B #14	ENSGT00390000004191 #15	ENSGT00390000015719.c #16	ENSGT00940000155361 #17	ENSGT00900000143263	ENSGT00390000016565 #18	ENSGT00390000017418 #19	ENSGT00940000160747 #20	ENSGT00940000156338 #21	ENSGT00950000182900.B #22	ENSGT00390000007371 #23	ENSGT00940000160932 #24	ENSGT00940000159398 #25	ENSGT00530000063929.a.b #26	ENSGT01060000248564.b.a.a.a #27	ENSGT00950000182962.b.a #28	ENSGT00390000018883 #29	ENSGT00940000157554 #30	ENSGT00940000160073 #31	ENSGT01000000214440.A.a.b.a #32	ENSGT00940000156115 #33	ENSGT00530000063770.c.a #34	ENSGT00390000010045 #35	ENSGT00950000183182.a.a #36	ENSGT01090000260093.b #37
Mus_C	ANCESTRAL SPECIES	2	ENSGT00950000182802.B.a.a.a.a.i.b ##8	ENSGT00940000159314 #9	ENSGT00940000155194 #10	ENSGT00390000013174 #11	ENSGT00940000156585 #12	ENSGT01090000260040.b.b.b.a #13	ENSGT00950000183172.B #14	ENSGT00390000004191 #15	ENSGT00390000015719.c #16	ENSGT00940000155361 #17	ENSGT00900000143263	ENSGT00390000016565 #18	ENSGT00390000017418 #19	ENSGT00940000160747 #20	ENSGT00940000156338 #21	ENSGT00950000182900.B #22	ENSGT00390000007371 #23	ENSGT00940000160932 #24	ENSGT00940000159398 #25	ENSGT00530000063929.a.b #26	ENSGT01060000248564.b.a.a.a #27	ENSGT00950000182962.b.a #28	ENSGT00390000018883 #29	ENSGT00940000157554 #30	ENSGT00940000160073.g #31	ENSGT01000000214440.A.a.b.a #32	ENSGT00940000156115 #33	ENSGT00530000063770.c.a #34	ENSGT00390000010045 #35	ENSGT00950000183182.a.a #36	ENSGT01090000260093.b #37
spretus	MODERN SPECIES	13	Lin28a (MGP_SPRETEiJ_G0027583)	Dhdds (MGP_SPRETEiJ_G0027582) #7	Hmgn2 (MGP_SPRETEiJ_G0027581) ##8	Rps6ka1 (MGP_SPRETEiJ_G0027580) #9	Arid1a (MGP_SPRETEiJ_G0027579) #10	Pigv (MGP_SPRETEiJ_G0027578) #11	Zdhhc18 (MGP_SPRETEiJ_G0027577) #12	Gpn2 (MGP_SPRETEiJ_G0027576) #14	Gpatch3 (MGP_SPRETEiJ_G0027575) #15	Nr0b2 (MGP_SPRETEiJ_G0027574) #16	Nudc (MGP_SPRETEiJ_G0027573) #17	Kdf1 (MGP_SPRETEiJ_G0027572) #18	Trnp1 (MGP_SPRETEiJ_G0027571) #19	Tent5b (MGP_SPRETEiJ_G0027570) #20	Slc9a1 (MGP_SPRETEiJ_G0027569) #21	Wdtc1 (MGP_SPRETEiJ_G0027568) #22	Tmem222 (MGP_SPRETEiJ_G0027567) #23	Sytl1 (MGP_SPRETEiJ_G0027566) #24	Map3k6 (MGP_SPRETEiJ_G0027565) #25	Cd164l2 (MGP_SPRETEiJ_G0027564) #26	Gpr3 (MGP_SPRETEiJ_G0027563) #27	Wasf2 (MGP_SPRETEiJ_G0027562) #28	Ahdc1 (MGP_SPRETEiJ_G0027561) #29	Fgr (MGP_SPRETEiJ_G0027560) #30	Fam76a (MGP_SPRETEiJ_G0027559) #31	Stx12 (MGP_SPRETEiJ_G0027558) #32	Ppp1r8 (MGP_SPRETEiJ_G0027557) #33	Themis2 (MGP_SPRETEiJ_G0027556) #34	Rpa2 (MGP_SPRETEiJ_G0027555) #35	Smpdl3b (MGP_SPRETEiJ_G0027554) #36	Xkr8 (MGP_SPRETEiJ_G0027553) #37
Steppe mouse	MODERN SPECIES	3343	Arid1a (ENSMSIG00000000334) #10	Pigv (ENSMSIG00000000284) #11	ENSMSIG00000000251 ##8	Zdhhc18 (ENSMSIG00000000232) #12	Sfn (ENSMSIG00000000216) #13	Gpn2 (ENSMSIG00000000141) #14	Gpatch3 (ENSMSIG00000026503) #15	Nr0b2 (ENSMSIG00000026492) #16	Nudc (ENSMSIG00000026485) #17	ENSMSIG00000026482	Kdf1 (ENSMSIG00000026473) #18	Trnp1 (ENSMSIG00000026468) #19	ENSMSIG00000026463	Tent5b (ENSMSIG00000026455) #20	Slc9a1 (ENSMSIG00000026439) #21	Wdtc1 (ENSMSIG00000026410) #22	Tmem222 (ENSMSIG00000026400) #23	ENSMSIG00000026328 #24	Map3k6 (ENSMSIG00000026242) #25	Cd164l2 (ENSMSIG00000026225) #26	Gpr3 (ENSMSIG00000026220) #27	Wasf2 (ENSMSIG00000026175) #28	Ahdc1 (ENSMSIG00000026167) #29
Mouse	MODERN SPECIES	13	Dhdds (ENSMUSG00000012117) #7	Hmgn2 (ENSMUSG00000003038) ##8	Rps6ka1 (ENSMUSG00000003644) #9	Arid1a (ENSMUSG00000007880) #10	Pigv (ENSMUSG00000043257) #11	Zdhhc18 (ENSMUSG00000037553) #12	Sfn (ENSMUSG00000047281) #13	Gpn2 (ENSMUSG00000028848) #14	Gpatch3 (ENSMUSG00000028850) #15	Nr0b2 (ENSMUSG00000037583) #16	Nudc (ENSMUSG00000028851) #17	Kdf1 (ENSMUSG00000037600) #18	Trnp1 (ENSMUSG00000056596) #19	Tent5b (ENSMUSG00000046694) #20	Slc9a1 (ENSMUSG00000028854) #21	Wdtc1 (ENSMUSG00000037622) #22	Tmem222 (ENSMUSG00000028857) #23	Sytl1 (ENSMUSG00000028860) #24	Map3k6 (ENSMUSG00000028862) #25	Cd164l2 (ENSMUSG00000028865) #26	Gpr3 (ENSMUSG00000049649) #27	Wasf2 (ENSMUSG00000028868) #28	Ahdc1 (ENSMUSG00000037692) #29	Fgr (ENSMUSG00000028874) #30	Fam76a (ENSMUSG00000028878) #31	Stx12 (ENSMUSG00000028879) #32	Ppp1r8 (ENSMUSG00000028882) #33	Themis2 (ENSMUSG00000037731) #34	Rpa2 (ENSMUSG00000028884) #35	Smpdl3b (ENSMUSG00000028885) #36	Xkr8 (ENSMUSG00000037752) #37
Ryukyu mouse	MODERN SPECIES	13	Dhdds (MGP_CAROLIEiJ_G0026602) #7	MGP_CAROLIEiJ_G0026601 ##8	Rps6ka1 (MGP_CAROLIEiJ_G0026600) #9	Arid1a (MGP_CAROLIEiJ_G0026599) #10	Pigv (MGP_CAROLIEiJ_G0026598) #11	Zdhhc18 (MGP_CAROLIEiJ_G0026597) #12	Sfn (MGP_CAROLIEiJ_G0026596) #13	Gpn2 (MGP_CAROLIEiJ_G0026595) #14	Gpatch3 (MGP_CAROLIEiJ_G0026594) #15	Nr0b2 (MGP_CAROLIEiJ_G0026593) #16	Nudc (MGP_CAROLIEiJ_G0026592) #17	Kdf1 (MGP_CAROLIEiJ_G0026591) #18	Trnp1 (MGP_CAROLIEiJ_G0026590) #19	Tent5b (MGP_CAROLIEiJ_G0026589) #20	Slc9a1 (MGP_CAROLIEiJ_G0026588) #21	Wdtc1 (MGP_CAROLIEiJ_G0026587) #22	Tmem222 (MGP_CAROLIEiJ_G0026586) #23	Sytl1 (MGP_CAROLIEiJ_G0026585) #24	Map3k6 (MGP_CAROLIEiJ_G0026584) #25	Cd164l2 (MGP_CAROLIEiJ_G0026583) #26	Gpr3 (MGP_CAROLIEiJ_G0026582) #27	Wasf2 (MGP_CAROLIEiJ_G0026581) #28	Ahdc1 (MGP_CAROLIEiJ_G0026580) #29	Fgr (MGP_CAROLIEiJ_G0026579) #30	Fam76a (MGP_CAROLIEiJ_G0026578) #31	Stx12 (MGP_CAROLIEiJ_G0026577) #32	Ppp1r8 (MGP_CAROLIEiJ_G0026576) #33	Themis2 (MGP_CAROLIEiJ_G0026575) #34	Rpa2 (MGP_CAROLIEiJ_G0026574) #35	Smpdl3b (MGP_CAROLIEiJ_G0026573) #36	Xkr8 (MGP_CAROLIEiJ_G0026572) #37
Rat	MODERN SPECIES	15	Arid1a (ENSRNOG00000006137) #10	Pigv (ENSRNOG00000000121) #11	Zdhhc18 (ENSRNOG00000058156) #12	Sfn (ENSRNOG00000033153) #13	Gpn2 (ENSRNOG00000007083) #14	Gpatch3 (ENSRNOG00000007097) #15	ENSRNOG00000066253	Nr0b2 (ENSRNOG00000007229) #16	Nudc (ENSRNOG00000051720) #17	AC118963.1 (ENSRNOG00000049922)	Kdf1 (ENSRNOG00000055933) #18	ENSRNOG00000068236	Trnp1 (ENSRNOG00000055936) #19	Tent5b (ENSRNOG00000056153) #20	Slc9a1 (ENSRNOG00000007982) #21	Wdtc1 (ENSRNOG00000008377) #22	Tmem222 (ENSRNOG00000008564) #23	Map3k6 (ENSRNOG00000008936) #25	Cd164l2 (ENSRNOG00000009505) #26	Sytl1 (ENSRNOG00000008600) #24	Gpr3 (ENSRNOG00000009540) #27	Wasf2 (ENSRNOG00000009805) #28	Ahdc1 (ENSRNOG00000042855) #29	Fgr (ENSRNOG00000009912) #30	Fam76a (ENSRNOG00000011254) #31	Stx12 (ENSRNOG00000011804) #32	Ppp1r8 (ENSRNOG00000059550) #33	Themis2 (ENSRNOG00000012965) #34	Rpa2 (ENSRNOG00000013005) #35	Smpdl3b (ENSRNOG00000042326) #36	Xkr8 (ENSRNOG00000024312) #37