Murinae	ANCESTRAL SPECIES	40	ENSGT00390000002061	ENSGT00940000154530 #7	ENSGT00940000160445 #8	ENSGT00940000161845 #10	ENSGT00940000160340.c #11	ENSGT00940000162398 #12	ENSGT00940000154634.c #13	ENSGT00950000182808.b.a #15	ENSGT00730000111180 #16	ENSGT00940000159257 #17	ENSGT00390000005651 #18	ENSGT00940000156907 #19	ENSGT00940000163578.c ##20	ENSGT00940000163578.d #20	ENSGT00940000157414 #21	ENSGT00940000157353 #22	ENSGT00390000015564.y #23	ENSGT00940000160659 #24	ENSGT00940000161270	ENSGT00940000159435 #25	ENSGT00940000160385 #26	ENSGT00960000186656.a.a.a.a.a.b.db.b #27	ENSGT00960000186656.a.a.a.a.a.b.db.a #30
Mus	ANCESTRAL SPECIES	7	ENSGT00390000002061	ENSGT00940000154530 #7	ENSGT00940000160445 #8	ENSGT00940000161845.a #10	ENSGT00940000160340.c #11	ENSGT00940000162398 #12	ENSGT00940000154634.c #13	ENSGT00950000182808.b.a #15	ENSGT00730000111180 #16	ENSGT00940000159257 #17	ENSGT00390000005651 #18	ENSGT00940000156907 #19	ENSGT00940000163578.c ##20	ENSGT00940000163578.d #20	ENSGT00940000157414 #21	ENSGT00940000157353 #22	ENSGT00390000015564.y #23	ENSGT00940000160659 #24	ENSGT00940000161270	ENSGT00940000159435 #25	ENSGT00940000160385 #26	ENSGT00960000186656.a.a.a.a.a.b.db.b #27	ENSGT00960000186656.a.a.a.a.a.b.db.a #30	ENSGT00940000158777 #31	ENSGT00770000121214 #32	ENSGT00940000162962 #33	ENSGT00940000153141.B.b #34	ENSGT00390000014100 #35	ENSGT00950000183215.c.a.b #36	ENSGT00940000157658 #37	ENSGT00940000159294
Mus_A	ANCESTRAL SPECIES	9	ENSGT00390000002061	ENSGT00940000154530.fb #7	ENSGT00940000160445 #8	ENSGT00940000161845.a #10	ENSGT00940000160340.c #11	ENSGT00940000162398 #12	ENSGT00940000154634.c #13	ENSGT00950000182808.b.a #15	ENSGT00730000111180 #16	ENSGT00940000159257 #17	ENSGT00390000005651 #18	ENSGT00940000156907 #19	ENSGT00940000163578.c ##20	ENSGT00940000163578.d #20	ENSGT00940000157414 #21	ENSGT00940000157353 #22	ENSGT00390000015564.y #23	ENSGT00940000160659 #24	ENSGT00940000161270	ENSGT00940000159435 #25	ENSGT00940000160385 #26	ENSGT00960000186656.a.a.a.a.a.b.db.b #27	ENSGT00960000186656.a.a.a.a.a.b.db.a.a #29	ENSGT00960000186656.a.a.a.a.a.b.db.a.b #30	ENSGT00940000158777 #31	ENSGT00770000121214 #32	ENSGT00940000162962 #33	ENSGT00940000153141.B.b #34	ENSGT00390000014100 #35	ENSGT00950000183215.c.a.b #36	ENSGT00940000157658 #37
Mus_B	ANCESTRAL SPECIES	8	ENSGT00390000002061	ENSGT00940000154530.fb #7	ENSGT00940000160445 #8	ENSGT00940000161845.a #10	ENSGT00940000160340.c #11	ENSGT00940000162398 #12	ENSGT00940000154634.c #13	ENSGT00950000182808.b.a #15	ENSGT00730000111180 #16	ENSGT00940000159257 #17	ENSGT00390000005651 #18	ENSGT00940000156907 #19	ENSGT00940000163578.c ##20	ENSGT00940000163578.d #20	ENSGT00940000157414 #21	ENSGT00940000157353 #22	ENSGT00390000015564.y #23	ENSGT00940000160659 #24	ENSGT00940000161270	ENSGT00940000159435 #25	ENSGT00940000160385 #26	ENSGT00960000186656.a.a.a.a.a.b.db.b #27	ENSGT00960000186656.a.a.a.a.a.b.db.a.a.b #29	ENSGT00960000186656.a.a.a.a.a.b.db.a.b #30	ENSGT00940000158777 #31	ENSGT00770000121214 #32	ENSGT00940000162962 #33	ENSGT00940000153141.B.b #34	ENSGT00390000014100 #35	ENSGT00950000183215.c.a.b #36	ENSGT00940000157658 #37
Mus_C	ANCESTRAL SPECIES	6	ENSGT00390000002061	ENSGT00940000154530.fb #7	ENSGT00940000160445 #8	ENSGT00940000161845.a #10	ENSGT00940000160340.c #11	ENSGT00940000162398 #12	ENSGT00940000154634.c #13	ENSGT00950000182808.b.a #15	ENSGT00730000111180 #16	ENSGT00940000159257 #17	ENSGT00390000005651 #18	ENSGT00940000156907 #19	ENSGT00940000163578.c ##20	ENSGT00940000163578.d #20	ENSGT00940000157414 #21	ENSGT00940000157353 #22	ENSGT00390000015564.y #23	ENSGT00940000160659 #24	ENSGT00940000159435 #25	ENSGT00940000160385 #26	ENSGT00960000186656.a.a.a.a.a.b.db.b #27	ENSGT00960000186656.a.a.a.a.a.b.db.a.a.b #29	ENSGT00960000186656.a.a.a.a.a.b.db.a.b #30	ENSGT00940000158777 #31	ENSGT00770000121214 #32	ENSGT00940000162962 #33	ENSGT00940000153141.B.b #34	ENSGT00390000014100 #35	ENSGT00950000183215.c.a.b #36	ENSGT00940000157658 #37	ENSGT00940000159294
spretus	MODERN SPECIES	12	Fabp5 (MGP_SPRETEiJ_G0025768) #7	Pmp2 (MGP_SPRETEiJ_G0025769) #8	MGP_SPRETEiJ_G0025770 #9	Fabp9 (MGP_SPRETEiJ_G0025771) #10	Fabp4 (MGP_SPRETEiJ_G0025772) #11	Fabp12 (MGP_SPRETEiJ_G0025773) #12	Impa1 (MGP_SPRETEiJ_G0025774) #13	MGP_SPRETEiJ_G0025775 #14	Slc10a5 (MGP_SPRETEiJ_G0025776) #15	Zfand1 (MGP_SPRETEiJ_G0025777) #16	Chmp4c (MGP_SPRETEiJ_G0025778) #17	Snx16 (MGP_SPRETEiJ_G0025779) #18	MGP_SPRETEiJ_G0025780 #19	Slc7a12 (MGP_SPRETEiJ_G0025781) #20	Lrrcc1 (MGP_SPRETEiJ_G0025782) #21	E2f5 (MGP_SPRETEiJ_G0025783) #22	Rbis (MGP_SPRETEiJ_G0025784) #23	Car13 (MGP_SPRETEiJ_G0025785) #24	Car3 (MGP_SPRETEiJ_G0025787) #25	Car2 (MGP_SPRETEiJ_G0025788) #26	Sirpd (MGP_SPRETEiJ_G0025789) #27	MGP_SPRETEiJ_G0025792 #28	MGP_SPRETEiJ_G0025791 #29	MGP_SPRETEiJ_G0025793 #30	Ythdf3 (MGP_SPRETEiJ_G0025794) #31	Cypt12 (MGP_SPRETEiJ_G0025795) #32	Bhlhe22 (MGP_SPRETEiJ_G0025796) #33	Cyp7b1 (MGP_SPRETEiJ_G0025797) #34	Armc1 (MGP_SPRETEiJ_G0025799) #35	Mtfr1 (MGP_SPRETEiJ_G0025800) #36	Pde7a (MGP_SPRETEiJ_G0025801) #37
Mouse	MODERN SPECIES	12	Pag1 (ENSMUSG00000027508)	Fabp5 (ENSMUSG00000027533) #7	Myef2l (ENSMUSG00000049230)	Pmp2 (ENSMUSG00000052468) #8	Fabp9 (ENSMUSG00000027528) #10	Fabp4 (ENSMUSG00000062515) #11	Fabp12 (ENSMUSG00000027530) #12	Impa1 (ENSMUSG00000027531) #13	Slc10a5 (ENSMUSG00000058921) #15	Zfand1 (ENSMUSG00000039795) #16	Chmp4c (ENSMUSG00000027536) #17	Snx16 (ENSMUSG00000027534) #18	Ralyl (ENSMUSG00000039717) #19	Slc7a12 (ENSMUSG00000039710) #20	Lrrcc1 (ENSMUSG00000027550) #21	E2f5 (ENSMUSG00000027552) #22	Rbis (ENSMUSG00000078784) #23	Car13 (ENSMUSG00000027555) #24	Car1 (ENSMUSG00000027556)	Car3 (ENSMUSG00000027559) #25	Car2 (ENSMUSG00000027562) #26	Sirpd (ENSMUSG00000078783) #27	Sirpb1a (ENSMUSG00000095788) ##30	Sirpb1b (ENSMUSG00000095028) ##30	Sirpb1c (ENSMUSG00000074677) #29	Gm5150 (ENSMUSG00000078780) #30	Ythdf3 (ENSMUSG00000047213) #31	Cypt12 (ENSMUSG00000027564) #32	Bhlhe22 (ENSMUSG00000025128) #33	Cyp7b1 (ENSMUSG00000039519) #34	Armc1 (ENSMUSG00000027599) #35
Ryukyu mouse	MODERN SPECIES	12	Fabp5 (MGP_CAROLIEiJ_G0024838) ##7	Pmp2 (MGP_CAROLIEiJ_G0024839) #8	MGP_CAROLIEiJ_G0024840 #9	Fabp9 (MGP_CAROLIEiJ_G0024841) #10	Fabp4 (MGP_CAROLIEiJ_G0024842) #11	Fabp12 (MGP_CAROLIEiJ_G0024843) #12	Impa1 (MGP_CAROLIEiJ_G0024844) #13	MGP_CAROLIEiJ_G0024845 #14	Slc10a5 (MGP_CAROLIEiJ_G0024846) #15	Zfand1 (MGP_CAROLIEiJ_G0024847) #16	Chmp4c (MGP_CAROLIEiJ_G0024848) #17	Snx16 (MGP_CAROLIEiJ_G0024849) #18	MGP_CAROLIEiJ_G0024850 #19	Slc7a12 (MGP_CAROLIEiJ_G0024851) #20	Lrrcc1 (MGP_CAROLIEiJ_G0024852) #21	E2f5 (MGP_CAROLIEiJ_G0024853) #22	Rbis (MGP_CAROLIEiJ_G0024854) #23	Car13 (MGP_CAROLIEiJ_G0024855) #24	Car3 (MGP_CAROLIEiJ_G0024857) #25	Car2 (MGP_CAROLIEiJ_G0024858) #26	Sirpd (MGP_CAROLIEiJ_G0024859) #27	MGP_CAROLIEiJ_G0024860 #29	MGP_CAROLIEiJ_G0024861 #29	Ythdf3 (MGP_CAROLIEiJ_G0024863) #31	MGP_CAROLIEiJ_G0024864	Cypt12 (MGP_CAROLIEiJ_G0024865) #32	Bhlhe22 (MGP_CAROLIEiJ_G0024866) #33	Cyp7b1 (MGP_CAROLIEiJ_G0024867) #34	Armc1 (MGP_CAROLIEiJ_G0024868) #35	Mtfr1 (MGP_CAROLIEiJ_G0024869) #36	Pde7a (MGP_CAROLIEiJ_G0024870) #37
Shrew mouse	MODERN SPECIES	17	Pag1 (MGP_PahariEiJ_G0026285)	Fabp5 (MGP_PahariEiJ_G0026286) #7	Pmp2 (MGP_PahariEiJ_G0026287) #8	MGP_PahariEiJ_G0026288 #9	Fabp9 (MGP_PahariEiJ_G0026289) #10	Fabp4 (MGP_PahariEiJ_G0026290) #11	Fabp12 (MGP_PahariEiJ_G0026291) #12	Impa1 (MGP_PahariEiJ_G0026292) #13	MGP_PahariEiJ_G0026293 #14	Slc10a5 (MGP_PahariEiJ_G0026294) #15	Zfand1 (MGP_PahariEiJ_G0026295) #16	Chmp4c (MGP_PahariEiJ_G0026296) #17	Snx16 (MGP_PahariEiJ_G0026297) #18	MGP_PahariEiJ_G0026298 #19	Slc7a12 (MGP_PahariEiJ_G0026299) #20	MGP_PahariEiJ_G0026300 #22	MGP_PahariEiJ_G0026301 #23	Car13 (MGP_PahariEiJ_G0026302) #24	MGP_PahariEiJ_G0026303	Car3 (MGP_PahariEiJ_G0026304) #25	Car2 (MGP_PahariEiJ_G0026305) #26	Sirpd (MGP_PahariEiJ_G0026306) #27	MGP_PahariEiJ_G0026307 #30	MGP_PahariEiJ_G0026308 #30	Ythdf3 (MGP_PahariEiJ_G0026310) #31	MGP_PahariEiJ_G0026311 #32	Bhlhe22 (MGP_PahariEiJ_G0026312) #33	Cyp7b1 (MGP_PahariEiJ_G0026313) #34	Armc1 (MGP_PahariEiJ_G0026314) #35	Mtfr1 (MGP_PahariEiJ_G0026315) #36	Pde7a (MGP_PahariEiJ_G0026316) #37
Rat	DUPLICATION
Rat	MODERN SPECIES	11	Fabp12 (ENSRNOG00000038825) #12	Impa1 (ENSRNOG00000010482) #13	Zfand1 (ENSRNOG00000010342) #16	Slc10a5 (ENSRNOG00000067758) #15	Chmp4c (ENSRNOG00000010238) #17	Snx16 (ENSRNOG00000009953) #18	Tgap1 (ENSRNOG00000022511)	ENSRNOG00000069332	AABR07009260.1 (ENSRNOG00000030039)	LOC100910852 (ENSRNOG00000051687)	Ralyl (ENSRNOG00000011400) #19	ENSRNOG00000068087	LOC688389 (ENSRNOG00000028582) ##20	Slc7a12 (ENSRNOG00000033830) #20	Lrrcc1 (ENSRNOG00000010891) #21	E2f5 (ENSRNOG00000010760) #22	Rbis (ENSRNOG00000064945) #23	AABR07011733.1 (ENSRNOG00000061317)	Car13 (ENSRNOG00000021323) #24	Car1 (ENSRNOG00000010698)	Car3 (ENSRNOG00000010079) #25	Car2 (ENSRNOG00000009629) #26	ENSRNOG00000031320	ENSRNOG00000064861	AABR07008876.1 (ENSRNOG00000053292) #27	LOC100909964 (ENSRNOG00000046941) #30	Sirpal1 (ENSRNOG00000031024) #30	Sirpb2 (ENSRNOG00000032580) #30	LOC100909964 (ENSRNOG00000043478) #30	ENSRNOG00000064528	ENSRNOG00000067567
Rat	MODERN SPECIES		Aurkc (ENSRNOG00000015825)	LOC102547412 (ENSRNOG00000059513)	Zfp954 (ENSRNOG00000022742)	Zfp773-ps1 (ENSRNOG00000047061)	Zfp772 (ENSRNOG00000015598)	ENSRNOG00000062946	LOC691135 (ENSRNOG00000066094)	Zfp418 (ENSRNOG00000015271)	Vom2r28 (ENSRNOG00000002641)	Dcun1d3 (ENSRNOG00000014037)	Vom2r-ps45 (ENSRNOG00000009146)	Vom1r31 (ENSRNOG00000068723)	Nlrp4f (ENSRNOG00000027705)	Nlrp4a (ENSRNOG00000042030)	Vom2r27 (ENSRNOG00000048635)	ENSRNOG00000067618 #22	LOC292543 (ENSRNOG00000054438)	Nlrp12 (ENSRNOG00000060745)	Or6al2 (ENSRNOG00000063370)	LOC103689958 (ENSRNOG00000066405)	Or6al1 (ENSRNOG00000066178)	ENSRNOG00000063395	Myadm (ENSRNOG00000053450)	Prkcg (ENSRNOG00000054371)	Cacng7 (ENSRNOG00000056257)	Cacng8 (ENSRNOG00000057848)	Cacng6 (ENSRNOG00000063051)	Vstm1 (ENSRNOG00000070245)	Tarm1 (ENSRNOG00000055581)	LOC100359972 (ENSRNOG00000055796)	Oscar (ENSRNOG00000055716)