Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	85	ENSGT00940000155422.cb.b	ENSGT00940000155275.c.a.b	ENSGT00940000156002.a.a.b #8	ENSGT00940000159652.m #9	ENSGT00940000164772.g.b #10	ENSGT00940000164732.C #11	ENSGT00390000002738.a #12	ENSGT00390000016776.h #13	ENSGT00950000183160.B.h ##14	ENSGT00940000156664.c.a #15	ENSGT00940000158699.f #16	ENSGT00940000153892.B.b #17	ENSGT00440000038585.c.h.a.b	ENSGT00940000156340.a.d.b #19	ENSGT00940000161345.b #20	ENSGT00940000163205.d.n #22	ENSGT01020000230351.D.a.a.a.e.a #23	ENSGT00950000182989.D.a.b.h #24	ENSGT00940000159585.h #25	ENSGT00390000015020.c #26	ENSGT00940000159721.h.i.b #27	ENSGT00940000159721.h.j.a #28	ENSGT00940000166328.b #30	ENSGT00390000014845.ab ##31	ENSGT00940000156436.w.a	ENSGT01030000234627.a.b.a.b.b.b	ENSGT00950000183203.c.a.b	ENSGT00940000166762.c	ENSGT00940000154702.a.b.a	ENSGT00390000006044.l	ENSGT00730000111140
Cyprininae_a	ANCESTRAL SPECIES	44	ENSGT00940000155422.cb.b	ENSGT00940000163129	ENSGT00940000155275.c.a.b	ENSGT00940000156002.a.a.b #8	ENSGT00940000159652.m #9	ENSGT00940000164772.g.b #10	ENSGT00940000164732.C #11	ENSGT00390000002738.a #12	ENSGT00390000016776.h #13	ENSGT00940000156664.c.a #15	ENSGT00940000158699.f #16	ENSGT00940000153892.B.b #17	ENSGT00440000038585.c.h.a.b	ENSGT00940000156340.a.d.b #19	ENSGT00940000161345.b #20	ENSGT00940000163205.d.n #22	ENSGT01020000230351.D.a.a.a.e.a #23	ENSGT00950000182989.D.a.b.h #24	ENSGT00940000159585.h #25	ENSGT00390000015020.c #26	ENSGT00940000159721.h.i.b #27	ENSGT00940000159721.h.j.a #28	ENSGT00510000048902.a.f.b #29	ENSGT00940000166328.b #30	ENSGT00390000014845.ab ##31	ENSGT00670000099470.a #32	ENSGT00950000183197.b.a.b.c #33	ENSGT01070000253744.a.b.tb.b #34	ENSGT00940000165531.b.b.b #35	ENSGT00950000182815.a.a.b.g.a #36	ENSGT00940000157242.a.b.c #37
Golden-line barbel	MODERN SPECIES	206	ENSSGRG00000022173 #7	ehmt1b (ENSSGRG00000022235) #8	ARRDC1 (ENSSGRG00000023781) #9	glulc (ENSSGRG00000023782) #10	ENSSGRG00000023784 #11	phpt1 (ENSSGRG00000023786) #12	noc4l (ENSSGRG00000023787) #13	ENSSGRG00000023788 #14	ULK1 (ENSSGRG00000023800) #15	MMP17 (ENSSGRG00000024901) #16	sfswap (ENSSGRG00000024902) #17	ENSSGRG00000024903 #18	MMP11 (ENSSGRG00000024906) #19	chchd10 (ENSSGRG00000024938) #20	ENSSGRG00000024945 #21	gstt1b (ENSSGRG00000024946) #22	p2rx4a (ENSSGRG00000024956) #23	idh3b (ENSSGRG00000025280) #24	ptpra (ENSSGRG00000025428) #25	gnrh2 (ENSSGRG00000025507) #26	GCNT4 (ENSSGRG00000025511) #27	GCNT4 (ENSSGRG00000025512) #28	ENSSGRG00000025513 #29	lhx5 (ENSSGRG00000025515) #30	mzt2b (ENSSGRG00000025516) #31	zgc:193801 (ENSSGRG00000025517) #32	ENSSGRG00000025520 #33	ENSSGRG00000025522 #34	tnfrsfa (ENSSGRG00000025525) #35	unc5da (ENSSGRG00000025528) #36	aqp3b (ENSSGRG00000025560) #37
Common carp reference	MODERN SPECIES	45	ENSCCRG00000059346	ehmt1b (ENSCCRG00000079543) #8	ARRDC1 (ENSCCRG00000038546) #9	glulc (ENSCCRG00000059615) #10	ENSCCRG00000049487 #11	noc4l (ENSCCRG00000017019) #13	ULK1 (ENSCCRG00000071435) #15	ENSCCRG00000016994 #16	sfswap (ENSCCRG00000009541) #17	ENSCCRG00000009525	ENSCCRG00000073205	ENSCCRG00000014748	smarcb1b (ENSCCRG00000047018)	ENSCCRG00000017142 #19	chchd10 (ENSCCRG00000017056) #20	gstt1b (ENSCCRG00000017066) #22	p2rx4a (ENSCCRG00000047638) #23	idh3b (ENSCCRG00000017081) #24	ptpra (ENSCCRG00000048291) #25	gnrh2 (ENSCCRG00000048620) #26	ENSCCRG00000055110 #27	ENSCCRG00000080530 #28	ENSCCRG00000017202 #29	lhx5 (ENSCCRG00000078244) #30	mzt2b (ENSCCRG00000082452) ##31	zgc:193801 (ENSCCRG00000012680) #32	ENSCCRG00000026537 #34	tnfrsfa (ENSCCRG00000012874) #35	unc5da (ENSCCRG00000078566) #36	aqp3b (ENSCCRG00000055317) #37	ENSCCRG00000053193
Goldfish	MODERN SPECIES	13	CACNA1B (ENSCARG00000016324)	ehmt1b (ENSCARG00000015824) #8	ARRDC1 (ENSCARG00000015803) #9	glulc (ENSCARG00000015796) #10	ENSCARG00000015783 #11	noc4l (ENSCARG00000015724) #13	pus1 (ENSCARG00000015705) ##14	ULK1 (ENSCARG00000014582) #15	MMP17 (ENSCARG00000014511) #16	ENSCARG00000014489 #17	ENSCARG00000014461	smarcb1b (ENSCARG00000014424)	MMP11 (ENSCARG00000014415) #19	chchd10 (ENSCARG00000014400) #20	ddt (ENSCARG00000014393)	gstt1b (ENSCARG00000014390) #22	p2rx4a (ENSCARG00000014009) #23	ptpra (ENSCARG00000012252) #25	gnrh2a (ENSCARG00000012201) #26	GCNT4 (ENSCARG00000012193) #27	GCNT4 (ENSCARG00000012190) #28	lhx5 (ENSCARG00000012184) #30	ENSCARG00000012130	VAV2 (ENSCARG00000010911)	ENSCARG00000010865	dnai1.2 (ENSCARG00000010308)	stx2a (ENSCARG00000010257)	RIMBP2 (ENSCARG00000010157)	ENSCARG00000010135	TMEM132C (ENSCARG00000010129)	smpd4 (ENSCARG00000008444)
Cyprininae	ANCESTRAL SPECIES	141	ENSGT00940000163129	ENSGT00940000155275.c.a.a	ENSGT00940000156002.a.a.a ##8	ENSGT00940000159652.n ##9	ENSGT00940000164772.g.a ##10	ENSGT00390000016776.g ##13	ENSGT00950000183160.B.g #14	ENSGT00940000156664.c.b ##15	ENSGT00940000158699.e ##16	ENSGT00940000153892.B.a ##17	ENSGT01100000263473.a.b.g.a.a.b.b.a.b.b.a	ENSGT00440000038585.c.g	ENSGT00940000156340.a.d.a ##19	ENSGT00940000161345.a ##20	ENSGT00940000166931	ENSGT00940000163205.d.m ##22	ENSGT00950000182989.D.a.b.g ##24	ENSGT00940000159585.g ##25	ENSGT00390000015020.d ##26	ENSGT00940000159721.h.i.a ##28	ENSGT00510000048902.a.f #29	ENSGT00940000166328.a ##30	ENSGT00390000014845.`b #31	ENSGT00670000099470.b ##32	ENSGT00950000183197.b.a.b.d ##33	ENSGT01070000253744.a.b.tb.a ##34	ENSGT00940000165531.b.b.a ##35	ENSGT00950000182815.a.a.b.g.b ##36	ENSGT00940000157242.a.b.d ##37	ENSGT00390000012669.cc	ENSGT01050000245132.a
Goldfish	MODERN SPECIES	40	ENSCARG00000067214	CACNA1B (ENSCARG00000065450)	ehmt1b (ENSCARG00000064369) ##8	ARRDC1 (ENSCARG00000064317) ##9	glulc (ENSCARG00000064313) ##10	noc4l (ENSCARG00000064222) ##13	pus1 (ENSCARG00000064189) #14	ULK1 (ENSCARG00000063607) ##15	MMP17 (ENSCARG00000063372) ##16	sfswap (ENSCARG00000063237) ##17	ENSCARG00000063223	smarcb1b (ENSCARG00000063044)	chchd10 (ENSCARG00000062991) ##20	MMP11 (ENSCARG00000062968) ##19	ddt (ENSCARG00000062949)	gstt1b (ENSCARG00000062943) ##22	idh3b (ENSCARG00000062641) #24	ptpra (ENSCARG00000054948) ##25	gnrh2b (ENSCARG00000054777) ##26	GCNT4 (ENSCARG00000054769) ##28	ENSCARG00000054758 #29	lhx5 (ENSCARG00000054738) ##30	mzt2b (ENSCARG00000054710) #31	zgc:193801 (ENSCARG00000054696) ##32	ENSCARG00000054686 ##34	tnfrsfa (ENSCARG00000069415) ##35	unc5da (ENSCARG00000069248) ##36	ENSCARG00000069206	SPECC1L (ENSCARG00000069095)	setb (ENSCARG00000069042)	dync2i2 (ENSCARG00000069019)
Cyprininae_a	ANCESTRAL SPECIES	353	ENSGT00950000183002.B.a.b.q.b	ENSGT00940000155422.cb.a	ENSGT00940000155275.c.a.a	ENSGT00940000156002.a.a.a ##8	ENSGT00940000159652.n ##9	ENSGT00940000164772.g.a ##10	ENSGT00390000016776.g ##13	ENSGT00950000183160.B.g #14	ENSGT00940000156664.c.b ##15	ENSGT00940000158699.e ##16	ENSGT00940000153892.B.a ##17	ENSGT00440000038585.c.g	ENSGT00940000156340.a.d.a ##19	ENSGT00940000161345.a ##20	ENSGT00940000166931	ENSGT00940000163205.d.m ##22	ENSGT00950000182989.D.a.b.g ##24	ENSGT00940000159585.g ##25	ENSGT00390000015020.d ##26	ENSGT00940000159721.h.i.a ##28	ENSGT00510000048902.a.f.a ##29	ENSGT00940000166328.a ##30	ENSGT00390000014845.`b #31	ENSGT00670000099470.b ##32	ENSGT00950000183197.b.a.b.d ##33	ENSGT01070000253744.a.b.tb.a ##34	ENSGT00940000165531.b.b.a ##35	ENSGT00950000182815.a.a.b.g.b ##36
Common carp reference	MODERN SPECIES	38	ARRDC1 (ENSCCRG00000071985) ##9	glulc (ENSCCRG00000017043) ##10	noc4l (ENSCCRG00000078638) ##13	pus1 (ENSCCRG00000049457) #14	ULK1 (ENSCCRG00000015425) ##15	MMP17 (ENSCCRG00000015392) ##16	sfswap (ENSCCRG00000039373) ##17	ENSCCRG00000043140	ENSCCRG00000011856	ENSCCRG00000064185	ENSCCRG00000043152	ENSCCRG00000076952	smarcb1b (ENSCCRG00000012751)	ENSCCRG00000012756 ##19	chchd10 (ENSCCRG00000017059) #20	gstt1b (ENSCCRG00000060185) ##22	idh3b (ENSCCRG00000048275) ##24	ptpra (ENSCCRG00000049802) ##25	gnrh2 (ENSCCRG00000052123) ##26	ENSCCRG00000064003 ##28	ENSCCRG00000074322 ##29	lhx5 (ENSCCRG00000017204) ##30	mzt2b (ENSCCRG00000076024) #31	zgc:193801 (ENSCCRG00000063885) ##32	ENSCCRG00000012871 ##34	tnfrsfa (ENSCCRG00000040423) ##35	unc5da (ENSCCRG00000003275) ##36	ENSCCRG00000061942	aqp3b (ENSCCRG00000053298) ##37	ENSCCRG00000068815	vps29 (ENSCCRG00000062195)
Golden-line barbel	MODERN SPECIES	354	glulc (ENSSGRG00000050340) ##10	noc4l (ENSSGRG00000050284) ##13	ULK1 (ENSSGRG00000050029) ##15	MMP17 (ENSSGRG00000050021) ##16	sfswap (ENSSGRG00000050014) ##17	ENSSGRG00000050010	ENSSGRG00000050008	ENSSGRG00000050005	ENSSGRG00000050002	ENSSGRG00000049999	ENSSGRG00000049998	smarcb1b (ENSSGRG00000049984)	MMP11 (ENSSGRG00000049983) ##19	chchd10 (ENSSGRG00000049982) ##20	ddt (ENSSGRG00000049980)	gstt1b (ENSSGRG00000049978) ##22	idh3b (ENSSGRG00000049567) ##24	ptpra (ENSSGRG00000049524) ##25	gnrh2 (ENSSGRG00000049521) ##26	GCNT4 (ENSSGRG00000049520) ##28	GCNT4 (ENSSGRG00000049519) ##28	ENSSGRG00000049517 ##29	ENSSGRG00000049516 ##30	zgc:193801 (ENSSGRG00000049515) ##32	ENSSGRG00000049514 ##33