Cyprinoidei	ANCESTRAL SPECIES	36	ENSGT00940000155275.c.a	ENSGT00940000156002.a.a	ENSGT00940000159652	ENSGT00940000164772 #7	ENSGT00940000164732.C	ENSGT00390000002738.a	ENSGT00390000016776 #8	ENSGT00950000183160.B	ENSGT00940000156664.c #9	ENSGT00940000158699 #10	ENSGT00940000153892.B #11	ENSGT01100000263473.a.b.g.a.a.b.b.a.b.b	ENSGT00940000156340.a.d #19	ENSGT00940000161345 #20	ENSGT00940000166931 #21	ENSGT00940000163205.d #22	ENSGT01020000230351.D.a.a.a.e.a	ENSGT00950000182989.D.a.b #23	ENSGT00940000159585 #24	ENSGT00390000015020 #25	ENSGT00940000159721.h #26	ENSGT00510000048902.a.f #28	ENSGT00940000166328 #29	ENSGT00390000014845	ENSGT00670000099470 #30	ENSGT00950000183197.b.a.b #31	ENSGT00940000165531.b.b	ENSGT00950000182815.a.a.b.g	ENSGT00940000157242.a.b	ENSGT00390000012669	ENSGT01050000245132
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	141	ENSGT00940000163129	ENSGT00940000155275.c.a.a	ENSGT00940000156002.a.a.a	ENSGT00940000159652.n	ENSGT00940000164772.g.a #7	ENSGT00390000016776.g #8	ENSGT00950000183160.B.g	ENSGT00940000156664.c.b #9	ENSGT00940000158699.e #10	ENSGT00940000153892.B.a #11	ENSGT01100000263473.a.b.g.a.a.b.b.a.b.b.a	ENSGT00440000038585.c.g #18	ENSGT00940000156340.a.d.a #19	ENSGT00940000161345.a #20	ENSGT00940000166931 #21	ENSGT00940000163205.d.m #22	ENSGT00950000182989.D.a.b.g #23	ENSGT00940000159585.g #24	ENSGT00390000015020.d #25	ENSGT00940000159721.h.i.a #26	ENSGT00510000048902.a.f #28	ENSGT00940000166328.a #29	ENSGT00390000014845.`b	ENSGT00670000099470.b #30	ENSGT00950000183197.b.a.b.d #31	ENSGT01070000253744.a.b.tb.a	ENSGT00940000165531.b.b.a	ENSGT00950000182815.a.a.b.g.b	ENSGT00940000157242.a.b.d	ENSGT00390000012669.cc	ENSGT01050000245132.a
Cyprininae_a	ANCESTRAL SPECIES	353	ENSGT00950000183002.B.a.b.q.b	ENSGT00940000155422.cb.a	ENSGT00940000155275.c.a.a	ENSGT00940000156002.a.a.a	ENSGT00940000159652.n	ENSGT00940000164772.g.a #7	ENSGT00390000016776.g #8	ENSGT00950000183160.B.g	ENSGT00940000156664.c.b #9	ENSGT00940000158699.e #10	ENSGT00940000153892.B.a #11	ENSGT00440000038585.c.g #18	ENSGT00940000156340.a.d.a #19	ENSGT00940000161345.a #20	ENSGT00940000166931 #21	ENSGT00940000163205.d.m #22	ENSGT00950000182989.D.a.b.g #23	ENSGT00940000159585.g #24	ENSGT00390000015020.d #25	ENSGT00940000159721.h.i.a #26	ENSGT00510000048902.a.f.a #28	ENSGT00940000166328.a #29	ENSGT00390000014845.`b	ENSGT00670000099470.b #30	ENSGT00950000183197.b.a.b.d #31	ENSGT01070000253744.a.b.tb.a	ENSGT00940000165531.b.b.a	ENSGT00950000182815.a.a.b.g.b
Golden-line barbel	MODERN SPECIES	354	glulc (ENSSGRG00000050340) #7	noc4l (ENSSGRG00000050284) #8	ULK1 (ENSSGRG00000050029) #9	MMP17 (ENSSGRG00000050021) #10	sfswap (ENSSGRG00000050014) #11	ENSSGRG00000050010 #12	ENSSGRG00000050008 #13	ENSSGRG00000050005 #14	ENSSGRG00000050002 #15	ENSSGRG00000049999 #16	ENSSGRG00000049998 #17	smarcb1b (ENSSGRG00000049984) #18	MMP11 (ENSSGRG00000049983) #19	chchd10 (ENSSGRG00000049982) #20	ddt (ENSSGRG00000049980) #21	gstt1b (ENSSGRG00000049978) #22	idh3b (ENSSGRG00000049567) #23	ptpra (ENSSGRG00000049524) #24	gnrh2 (ENSSGRG00000049521) #25	GCNT4 (ENSSGRG00000049520) #26	GCNT4 (ENSSGRG00000049519) #27	ENSSGRG00000049517 #28	ENSSGRG00000049516 #29	zgc:193801 (ENSSGRG00000049515) #30	ENSSGRG00000049514 #31
Common carp reference	MODERN SPECIES	38	ARRDC1 (ENSCCRG00000071985)	glulc (ENSCCRG00000017043) #7	noc4l (ENSCCRG00000078638) #8	pus1 (ENSCCRG00000049457)	ULK1 (ENSCCRG00000015425) #9	MMP17 (ENSCCRG00000015392) #10	sfswap (ENSCCRG00000039373) #11	ENSCCRG00000043140	ENSCCRG00000011856 #15	ENSCCRG00000064185 #12	ENSCCRG00000043152	ENSCCRG00000076952	smarcb1b (ENSCCRG00000012751) ##18	ENSCCRG00000012756 #19	chchd10 (ENSCCRG00000017059) ##20	gstt1b (ENSCCRG00000060185) #22	idh3b (ENSCCRG00000048275) #23	ptpra (ENSCCRG00000049802) #24	gnrh2 (ENSCCRG00000052123) #25	ENSCCRG00000064003 #26	ENSCCRG00000074322 #28	lhx5 (ENSCCRG00000017204) #29	mzt2b (ENSCCRG00000076024)	zgc:193801 (ENSCCRG00000063885) #30	ENSCCRG00000012871	tnfrsfa (ENSCCRG00000040423)	unc5da (ENSCCRG00000003275)	ENSCCRG00000061942	aqp3b (ENSCCRG00000053298)	ENSCCRG00000068815	vps29 (ENSCCRG00000062195)
Goldfish	MODERN SPECIES	40	ENSCARG00000067214	CACNA1B (ENSCARG00000065450)	ehmt1b (ENSCARG00000064369)	ARRDC1 (ENSCARG00000064317)	glulc (ENSCARG00000064313) #7	noc4l (ENSCARG00000064222) #8	pus1 (ENSCARG00000064189)	ULK1 (ENSCARG00000063607) #9	MMP17 (ENSCARG00000063372) #10	sfswap (ENSCARG00000063237) #11	ENSCARG00000063223	smarcb1b (ENSCARG00000063044) ##18	chchd10 (ENSCARG00000062991) #20	MMP11 (ENSCARG00000062968) #19	ddt (ENSCARG00000062949) #21	gstt1b (ENSCARG00000062943) #22	idh3b (ENSCARG00000062641) ##23	ptpra (ENSCARG00000054948) #24	gnrh2b (ENSCARG00000054777) #25	GCNT4 (ENSCARG00000054769) #26	ENSCARG00000054758 #28	lhx5 (ENSCARG00000054738) #29	mzt2b (ENSCARG00000054710)	zgc:193801 (ENSCARG00000054696) #30	ENSCARG00000054686	tnfrsfa (ENSCARG00000069415)	unc5da (ENSCARG00000069248)	ENSCARG00000069206	SPECC1L (ENSCARG00000069095)	setb (ENSCARG00000069042)	dync2i2 (ENSCARG00000069019)
Cyprininae	ANCESTRAL SPECIES	85	ENSGT00940000155422.cb.b	ENSGT00940000155275.c.a.b	ENSGT00940000156002.a.a.b	ENSGT00940000159652.m	ENSGT00940000164772.g.b ##7	ENSGT00940000164732.C	ENSGT00390000002738.a	ENSGT00390000016776.h ##8	ENSGT00950000183160.B.h	ENSGT00940000156664.c.a ##9	ENSGT00940000158699.f ##10	ENSGT00940000153892.B.b ##11	ENSGT00440000038585.c.h.a.b ##18	ENSGT00940000156340.a.d.b ##19	ENSGT00940000161345.b ##20	ENSGT00940000163205.d.n ##22	ENSGT01020000230351.D.a.a.a.e.a	ENSGT00950000182989.D.a.b.h ##23	ENSGT00940000159585.h ##24	ENSGT00390000015020.c ##25	ENSGT00940000159721.h.i.b ##26	ENSGT00940000159721.h.j.a ##26	ENSGT00940000166328.b ##29	ENSGT00390000014845.ab	ENSGT00940000156436.w.a	ENSGT01030000234627.a.b.a.b.b.b	ENSGT00950000183203.c.a.b	ENSGT00940000166762.c	ENSGT00940000154702.a.b.a	ENSGT00390000006044.l	ENSGT00730000111140
Goldfish	MODERN SPECIES	13	CACNA1B (ENSCARG00000016324)	ehmt1b (ENSCARG00000015824)	ARRDC1 (ENSCARG00000015803)	glulc (ENSCARG00000015796) ##7	ENSCARG00000015783	noc4l (ENSCARG00000015724) ##8	pus1 (ENSCARG00000015705)	ULK1 (ENSCARG00000014582) ##9	MMP17 (ENSCARG00000014511) ##10	ENSCARG00000014489 ##11	ENSCARG00000014461	smarcb1b (ENSCARG00000014424) ##18	MMP11 (ENSCARG00000014415) ##19	chchd10 (ENSCARG00000014400) ##20	ddt (ENSCARG00000014393) #21	gstt1b (ENSCARG00000014390) ##22	p2rx4a (ENSCARG00000014009)	ptpra (ENSCARG00000012252) ##24	gnrh2a (ENSCARG00000012201) ##25	GCNT4 (ENSCARG00000012193) ##26	GCNT4 (ENSCARG00000012190) ##26	lhx5 (ENSCARG00000012184) ##29	ENSCARG00000012130	VAV2 (ENSCARG00000010911)	ENSCARG00000010865	dnai1.2 (ENSCARG00000010308)	stx2a (ENSCARG00000010257)	RIMBP2 (ENSCARG00000010157)	ENSCARG00000010135	TMEM132C (ENSCARG00000010129)	smpd4 (ENSCARG00000008444)
Cyprininae_a	ANCESTRAL SPECIES	44	ENSGT00940000155422.cb.b	ENSGT00940000163129	ENSGT00940000155275.c.a.b	ENSGT00940000156002.a.a.b	ENSGT00940000159652.m	ENSGT00940000164772.g.b ##7	ENSGT00940000164732.C	ENSGT00390000002738.a	ENSGT00390000016776.h ##8	ENSGT00940000156664.c.a ##9	ENSGT00940000158699.f ##10	ENSGT00940000153892.B.b ##11	ENSGT00440000038585.c.h.a.b ##18	ENSGT00940000156340.a.d.b ##19	ENSGT00940000161345.b ##20	ENSGT00940000163205.d.n ##22	ENSGT01020000230351.D.a.a.a.e.a	ENSGT00950000182989.D.a.b.h ##23	ENSGT00940000159585.h ##24	ENSGT00390000015020.c ##25	ENSGT00940000159721.h.i.b ##26	ENSGT00940000159721.h.j.a ##26	ENSGT00510000048902.a.f.b ##28	ENSGT00940000166328.b ##29	ENSGT00390000014845.ab	ENSGT00670000099470.a ##30	ENSGT00950000183197.b.a.b.c ##31	ENSGT01070000253744.a.b.tb.b	ENSGT00940000165531.b.b.b	ENSGT00950000182815.a.a.b.g.a	ENSGT00940000157242.a.b.c
Golden-line barbel	MODERN SPECIES	206	ENSSGRG00000022173	ehmt1b (ENSSGRG00000022235)	ARRDC1 (ENSSGRG00000023781)	glulc (ENSSGRG00000023782) ##7	ENSSGRG00000023784	phpt1 (ENSSGRG00000023786)	noc4l (ENSSGRG00000023787) ##8	ENSSGRG00000023788	ULK1 (ENSSGRG00000023800) ##9	MMP17 (ENSSGRG00000024901) ##10	sfswap (ENSSGRG00000024902) ##11	ENSSGRG00000024903	MMP11 (ENSSGRG00000024906) ##19	chchd10 (ENSSGRG00000024938) ##20	ENSSGRG00000024945	gstt1b (ENSSGRG00000024946) ##22	p2rx4a (ENSSGRG00000024956)	idh3b (ENSSGRG00000025280) ##23	ptpra (ENSSGRG00000025428) ##24	gnrh2 (ENSSGRG00000025507) ##25	GCNT4 (ENSSGRG00000025511) ##26	GCNT4 (ENSSGRG00000025512) ##26	ENSSGRG00000025513 ##28	lhx5 (ENSSGRG00000025515) ##29	mzt2b (ENSSGRG00000025516)	zgc:193801 (ENSSGRG00000025517) ##30	ENSSGRG00000025520 ##31	ENSSGRG00000025522	tnfrsfa (ENSSGRG00000025525)	unc5da (ENSSGRG00000025528)	aqp3b (ENSSGRG00000025560)
Common carp reference	MODERN SPECIES	45	ENSCCRG00000059346	ehmt1b (ENSCCRG00000079543)	ARRDC1 (ENSCCRG00000038546)	glulc (ENSCCRG00000059615) ##7	ENSCCRG00000049487	noc4l (ENSCCRG00000017019) ##8	ULK1 (ENSCCRG00000071435) ##9	ENSCCRG00000016994 ##10	sfswap (ENSCCRG00000009541) ##11	ENSCCRG00000009525	ENSCCRG00000073205	ENSCCRG00000014748	smarcb1b (ENSCCRG00000047018) ##18	ENSCCRG00000017142 ##19	chchd10 (ENSCCRG00000017056) ##20	gstt1b (ENSCCRG00000017066) ##22	p2rx4a (ENSCCRG00000047638)	idh3b (ENSCCRG00000017081) ##23	ptpra (ENSCCRG00000048291) ##24	gnrh2 (ENSCCRG00000048620) ##25	ENSCCRG00000055110 ##26	ENSCCRG00000080530 ##26	ENSCCRG00000017202 ##28	lhx5 (ENSCCRG00000078244) ##29	mzt2b (ENSCCRG00000082452)	zgc:193801 (ENSCCRG00000012680) ##30	ENSCCRG00000026537	tnfrsfa (ENSCCRG00000012874)	unc5da (ENSCCRG00000078566)	aqp3b (ENSCCRG00000055317)	ENSCCRG00000053193
Zebrafish	MODERN SPECIES	13	phpt1 (ENSDARG00000045567)	noc4l (ENSDARG00000045565) #8	pus1 (ENSDARG00000045562)	ULK1 (ENSDARG00000074481) #9	MMP17 (ENSDARG00000078915) #10	sfswap (ENSDARG00000005980) #11	ENSDARG00000058023	ENSDARG00000095592	ENSDARG00000089758	ENSDARG00000092303	si:dkey-11o15.10 (ENSDARG00000094859)	smarcb1b (ENSDARG00000011594) #18	ENSDARG00000016718 #19	chchd10 (ENSDARG00000010717) #20	ddt (ENSDARG00000044751) #21	gstt1b (ENSDARG00000017388) #22	p2rx4a (ENSDARG00000044752)	idh3b (ENSDARG00000044753) #23	ptpra (ENSDARG00000001769) #24	gnrh2 (ENSDARG00000044754) #25	GCNT4 (ENSDARG00000044755) #26	GCNT4 (ENSDARG00000077550) #26	ENSDARG00000004177 #28	lhx5 (ENSDARG00000057936) #29	mzt2b (ENSDARG00000057928)	zgc:193801 (ENSDARG00000076552) #30	CYB561A3 (ENSDARG00000028257) #31	ENSDARG00000092652	tnfrsfa (ENSDARG00000004451)	unc5da (ENSDARG00000092722)	aqp3b (ENSDARG00000069518)