Otomorpha	ANCESTRAL SPECIES	61	ENSGT00530000063497.a.b	ENSGT00390000000224	ENSGT00530000063187.A	ENSGT00940000158674	ENSGT00940000177481	ENSGT00940000153181	ENSGT00440000038585.c	ENSGT00530000063156.a.a.b	ENSGT00940000156340.a.c	ENSGT00940000163205.c ##22	ENSGT01100000263581	ENSGT01020000230351.D.a.a.b ##23	ENSGT00940000156340.a.d	ENSGT00940000161345 #20	ENSGT00940000166931 #21	ENSGT00940000163205.d #22	ENSGT01020000230351.D.a.a.a #23	ENSGT00610000086153	ENSGT00390000000571	ENSGT00390000004906.a.a	ENSGT00390000006784	ENSGT00940000156208.i.f	ENSGT00940000161685.A.a.c	ENSGT00940000157734	ENSGT00730000113357	ENSGT00940000165076.a	ENSGT00940000154909.b.b	ENSGT00940000154909.a.a	ENSGT00950000182864.a.b.b.a.a.a.a	ENSGT00390000013415.a.b.ib	ENSGT01030000234527.A.a.b.a.a.c.b
Otophysi	ANCESTRAL SPECIES	74	ENSGT00950000182864.a.b.b.a.a.a.a	ENSGT00940000154909.a.a	ENSGT00940000154909.b.b	ENSGT00940000165076.a	ENSGT00730000113357	ENSGT00940000157734	ENSGT00940000161685.A.a.c	ENSGT00940000156208.i.f	ENSGT00390000006784	ENSGT00390000004906.b	ENSGT00390000000571	ENSGT00610000086153	ENSGT00940000156340.a.d	ENSGT00940000161345 #20	ENSGT00940000166931 #21	ENSGT00940000163205.d #22	ENSGT01020000230351.D.a.a.a #23	ENSGT01020000230351.D.a.a.b ##23	ENSGT01100000263581	ENSGT00940000163205.c ##22	ENSGT00940000156340.a.c	ENSGT00530000063156.a.a.b	ENSGT00440000038585.c	ENSGT00940000153181	ENSGT00940000177481	ENSGT00390000000224	ENSGT00530000063497.a.b
Characiphysae	ANCESTRAL SPECIES	68	ENSGT00390000008220	ENSGT01020000230412.A.c.a	ENSGT00940000156235.c.a	ENSGT00940000153601.a.a.e.b.a	ENSGT00940000160918	ENSGT00390000013112 #12	ENSGT00390000008565.a #13	ENSGT00940000157958 #14	ENSGT00940000160114 #15	ENSGT00390000016537 #16	ENSGT00390000018706 #17	ENSGT00950000182888.a.a.a.h #18	ENSGT00940000157310 #19	ENSGT00940000161345 #20	ENSGT00940000166931 #21	ENSGT00940000163205.d #22	ENSGT01020000230351.D.a.a.a #23	ENSGT00950000182989.D.a.b #24	ENSGT00940000159585 #25	ENSGT00390000015020 #26	ENSGT00940000159721.h #27	ENSGT00510000048902.a.f	ENSGT00940000166328	ENSGT00390000014845	ENSGT00670000099470	ENSGT00940000165531.b.b	ENSGT00950000182815.a.a.b.g	ENSGT00940000157242.a.b
Characiphysae_b	ANCESTRAL SPECIES	73	ENSGT00390000008220	ENSGT01020000230412.A.c.a	ENSGT00940000156235.c.a	ENSGT00940000153601.a.a.e.b.a	ENSGT00940000160918	ENSGT00390000013112 #12	ENSGT00390000008565.a #13	ENSGT00940000157958 #14	ENSGT00940000160114 #15	ENSGT00390000016537 #16	ENSGT00390000018706 #17	ENSGT00950000182888.a.a.a.h #18	ENSGT00940000157310 #19	ENSGT00940000161345 #20	ENSGT00940000166931 #21	ENSGT00940000163205.d #22	ENSGT01020000230351.D.a.a.a #23	ENSGT01020000230351.D.a.a.b ##23	ENSGT00950000182989.D.a.b #24	ENSGT00940000159585 #25	ENSGT00390000015020 #26	ENSGT00940000159721.h #27	ENSGT00510000048902.a.f	ENSGT00940000166328	ENSGT00390000014845	ENSGT00670000099470
Characoidei	ANCESTRAL SPECIES	67	ENSGT00390000008220	ENSGT01020000230412.A.c.a	ENSGT00940000156235.c.a	ENSGT00940000153601.a.a.e.b.a	ENSGT00940000160918	ENSGT00390000013112 #12	ENSGT00390000008565.a #13	ENSGT00940000157958 #14	ENSGT00940000160114 #15	ENSGT00390000016537 #16	ENSGT00390000018706 #17	ENSGT00950000182888.a.a.a.h #18	ENSGT00940000157310 #19	ENSGT00940000161345 #20	ENSGT00940000166931 #21	ENSGT00940000163205.d #22	ENSGT01020000230351.D.a.a.a #23	ENSGT01020000230351.D.a.a.b ##23	ENSGT00950000182989.D.a.b #24	ENSGT00940000159585 #25	ENSGT00390000015020 #26	ENSGT00940000159721.h #27	ENSGT00510000048902.a.f	ENSGT00940000166328	ENSGT00390000014845	ENSGT00670000099470
Red-bellied piranha	MODERN SPECIES	625						dolpp1 (ENSPNAG00000005741) #12	miga2 (ENSPNAG00000016297) #13	st6galnac4 (ENSPNAG00000016286) #14	ST6GALNAC6 (ENSPNAG00000016281) #15	spout1 (ENSPNAG00000016265) #16	nsa2 (ENSPNAG00000016263) #17	tor1 (ENSPNAG00000016241) #18	scamp1 (ENSPNAG00000016232) #19	chchd10 (ENSPNAG00000016214) #20	ddt (ENSPNAG00000016205) #21	gstt1b (ENSPNAG00000016186) #22	p2rx4a (ENSPNAG00000016175) #23	idh3b (ENSPNAG00000016090) #24	ptpra (ENSPNAG00000016040) #25	gnrh2 (ENSPNAG00000015527) #26	GCNT4 (ENSPNAG00000003390) #27
Mexicana tetra	DUPLICATION
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	5	ENSAMXG00000038676	ENSAMXG00000029525	ENSAMXG00000030011	SETX (ENSAMXG00000014406)	dolpp1 (ENSAMXG00000032913) #12	miga2 (ENSAMXG00000014369) #13	st6galnac4 (ENSAMXG00000040179) #14	ST6GALNAC6 (ENSAMXG00000014345) #15	spout1 (ENSAMXG00000014331) #16	ENSAMXG00000034097	nsa2 (ENSAMXG00000033155) #17	tor1 (ENSAMXG00000014304) #18	scamp1 (ENSAMXG00000040128) #19	chchd10 (ENSAMXG00000014252) #20	ddt (ENSAMXG00000031381) #21	gstt1b (ENSAMXG00000033673) #22	gstt1b (ENSAMXG00000035085) #22	p2rx4a (ENSAMXG00000014206) #23	gstt1b (ENSAMXG00000014181) #22	idh3b (ENSAMXG00000035220) #24	ptpra (ENSAMXG00000014133) #25	gnrh2 (ENSAMXG00000014101) #26	GCNT4 (ENSAMXG00000026353) #27	ENSAMXG00000014081	lhx5 (ENSAMXG00000035790)	mzt2b (ENSAMXG00000031932)	zgc:193801 (ENSAMXG00000042916)	enkur (ENSAMXG00000032801)	ENSAMXG00000036027	ENSAMXG00000037074	ptpn13 (ENSAMXG00000011424)
Mexicana tetra	MODERN SPECIES	5	ENSAMXG00000029525	ENSAMXG00000030011	SETX (ENSAMXG00000014406)	dolpp1 (ENSAMXG00000032913) #12	miga2 (ENSAMXG00000014369) #13	st6galnac4 (ENSAMXG00000040179) #14	ST6GALNAC6 (ENSAMXG00000014345) #15	spout1 (ENSAMXG00000014331) #16	ENSAMXG00000034097	nsa2 (ENSAMXG00000033155) #17	tor1 (ENSAMXG00000014304) #18	scamp1 (ENSAMXG00000040128) #19	chchd10 (ENSAMXG00000014252) #20	ddt (ENSAMXG00000031381) #21	gstt1b (ENSAMXG00000033673) #22	gstt1b (ENSAMXG00000035085) #22	p2rx4a (ENSAMXG00000014206) #23	gstt1b (ENSAMXG00000014181) #22	idh3b (ENSAMXG00000035220) #24	ptpra (ENSAMXG00000014133) #25	gnrh2 (ENSAMXG00000014101) #26	GCNT4 (ENSAMXG00000026353) #27	ENSAMXG00000014081	lhx5 (ENSAMXG00000035790)	mzt2b (ENSAMXG00000031932)	zgc:193801 (ENSAMXG00000042916)	enkur (ENSAMXG00000032801)	ENSAMXG00000036027	ENSAMXG00000037074	ptpn13 (ENSAMXG00000011424)	ENSAMXG00000032439
Mexicana tetra	MODERN SPECIES	5	SETX (ENSAMXG00000014406)	dolpp1 (ENSAMXG00000032913) #12	miga2 (ENSAMXG00000014369) #13	st6galnac4 (ENSAMXG00000040179) #14	ST6GALNAC6 (ENSAMXG00000014345) #15	spout1 (ENSAMXG00000014331) #16	ENSAMXG00000034097	nsa2 (ENSAMXG00000033155) #17	tor1 (ENSAMXG00000014304) #18	scamp1 (ENSAMXG00000040128) #19	chchd10 (ENSAMXG00000014252) #20	ddt (ENSAMXG00000031381) #21	gstt1b (ENSAMXG00000033673) #22	gstt1b (ENSAMXG00000035085) #22	p2rx4a (ENSAMXG00000014206) #23	gstt1b (ENSAMXG00000014181) #22	idh3b (ENSAMXG00000035220) #24	ptpra (ENSAMXG00000014133) #25	gnrh2 (ENSAMXG00000014101) #26	GCNT4 (ENSAMXG00000026353) #27	ENSAMXG00000014081	lhx5 (ENSAMXG00000035790)	mzt2b (ENSAMXG00000031932)	zgc:193801 (ENSAMXG00000042916)	enkur (ENSAMXG00000032801)	ENSAMXG00000036027	ENSAMXG00000037074	ptpn13 (ENSAMXG00000011424)	ENSAMXG00000032439	ENSAMXG00000019527	ENSAMXG00000034137
Electric eel	MODERN SPECIES	801						dolpp1 (ENSEEEG00000006435) #12	miga2 (ENSEEEG00000006437) #13	st6galnac4 (ENSEEEG00000006441) #14	ST6GALNAC6 (ENSEEEG00000006443) #15	spout1 (ENSEEEG00000006447) #16	nsa2 (ENSEEEG00000006508) #17	tor1 (ENSEEEG00000006509) #18	scamp1 (ENSEEEG00000006511) #19	chchd10 (ENSEEEG00000006514) #20	ddt (ENSEEEG00000006517) #21	gstt1b (ENSEEEG00000006519) #22	p2rx4a (ENSEEEG00000006523) #23	dolk (ENSEEEG00000006527)	NUP188 (ENSEEEG00000006530)
Channel catfish	MODERN SPECIES	9	ENSIPUG00000007004	uck1 (ENSIPUG00000006985)	rapgef1b (ENSIPUG00000006801)	NTNG2 (ENSIPUG00000006764)	setx (ENSIPUG00000006685)	dolpp1 (ENSIPUG00000006634) #12	fam73b (ENSIPUG00000006553) #13	St6galnac3 (ENSIPUG00000006524) #14	st6galnac6 (ENSIPUG00000006510) #15	spout1 (ENSIPUG00000006486) #16	nsa2 (ENSIPUG00000006440) #17	tor1 (ENSIPUG00000006420) #18	Scamp1 (ENSIPUG00000006389) #19	CHCHD10 (ENSIPUG00000006362) #20	ddt (ENSIPUG00000006353) #21	gstt1b (ENSIPUG00000006312) #22	p2rx4a (ENSIPUG00000006157) #23	idh3b (ENSIPUG00000006085) #24	ptpra (ENSIPUG00000005987) #25	gnrh2 (ENSIPUG00000005968) #26	gcnt4 (ENSIPUG00000005958) #27	cdk5rap2 (ENSIPUG00000005846)	ENSIPUG00000005821	camsap1a (ENSIPUG00000005748)	notch1a (ENSIPUG00000005717)	KCNT1 (ENSIPUG00000005645)	B3GALT9 (ENSIPUG00000005634)	rnf165 (ENSIPUG00000005596)	c18h18orf25 (ENSIPUG00000005582)	haus1 (ENSIPUG00000005565)	atp5a1 (ENSIPUG00000005528)
Cyprinoidei	ANCESTRAL SPECIES	36	ENSGT00940000155275.c.a	ENSGT00940000156002.a.a	ENSGT00940000159652	ENSGT00940000164772	ENSGT00940000164732.C	ENSGT00390000002738.a	ENSGT00390000016776	ENSGT00950000183160.B	ENSGT00940000156664.c	ENSGT00940000158699	ENSGT00940000153892.B	ENSGT01100000263473.a.b.g.a.a.b.b.a.b.b	ENSGT00940000156340.a.d	ENSGT00940000161345 #20	ENSGT00940000166931 #21	ENSGT00940000163205.d #22	ENSGT01020000230351.D.a.a.a.e.a #23	ENSGT00950000182989.D.a.b #24	ENSGT00940000159585 #25	ENSGT00390000015020 #26	ENSGT00940000159721.h #27	ENSGT00510000048902.a.f	ENSGT00940000166328	ENSGT00390000014845	ENSGT00670000099470	ENSGT00950000183197.b.a.b	ENSGT00940000165531.b.b	ENSGT00950000182815.a.a.b.g	ENSGT00940000157242.a.b	ENSGT00390000012669	ENSGT01050000245132
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	141	ENSGT00940000163129	ENSGT00940000155275.c.a.a	ENSGT00940000156002.a.a.a	ENSGT00940000159652.n	ENSGT00940000164772.g.a	ENSGT00390000016776.g	ENSGT00950000183160.B.g	ENSGT00940000156664.c.b	ENSGT00940000158699.e	ENSGT00940000153892.B.a	ENSGT01100000263473.a.b.g.a.a.b.b.a.b.b.a	ENSGT00440000038585.c.g	ENSGT00940000156340.a.d.a	ENSGT00940000161345.a #20	ENSGT00940000166931 #21	ENSGT00940000163205.d.m #22	ENSGT00950000182989.D.a.b.g #24	ENSGT00940000159585.g #25	ENSGT00390000015020.d #26	ENSGT00940000159721.h.i.a #27	ENSGT00510000048902.a.f	ENSGT00940000166328.a	ENSGT00390000014845.`b	ENSGT00670000099470.b	ENSGT00950000183197.b.a.b.d	ENSGT01070000253744.a.b.tb.a	ENSGT00940000165531.b.b.a	ENSGT00950000182815.a.a.b.g.b	ENSGT00940000157242.a.b.d	ENSGT00390000012669.cc	ENSGT01050000245132.a
Goldfish	MODERN SPECIES	40	ENSCARG00000067214	CACNA1B (ENSCARG00000065450)	ehmt1b (ENSCARG00000064369)	ARRDC1 (ENSCARG00000064317)	glulc (ENSCARG00000064313)	noc4l (ENSCARG00000064222)	pus1 (ENSCARG00000064189)	ULK1 (ENSCARG00000063607)	MMP17 (ENSCARG00000063372)	sfswap (ENSCARG00000063237)	ENSCARG00000063223	smarcb1b (ENSCARG00000063044)	chchd10 (ENSCARG00000062991) #20	MMP11 (ENSCARG00000062968)	ddt (ENSCARG00000062949) #21	gstt1b (ENSCARG00000062943) #22	idh3b (ENSCARG00000062641) #24	ptpra (ENSCARG00000054948) #25	gnrh2b (ENSCARG00000054777) #26	GCNT4 (ENSCARG00000054769) #27	ENSCARG00000054758	lhx5 (ENSCARG00000054738)	mzt2b (ENSCARG00000054710)	zgc:193801 (ENSCARG00000054696)	ENSCARG00000054686	tnfrsfa (ENSCARG00000069415)	unc5da (ENSCARG00000069248)	ENSCARG00000069206	SPECC1L (ENSCARG00000069095)	setb (ENSCARG00000069042)	dync2i2 (ENSCARG00000069019)
Cyprininae_a	ANCESTRAL SPECIES	353	ENSGT00950000183002.B.a.b.q.b	ENSGT00940000155422.cb.a	ENSGT00940000155275.c.a.a	ENSGT00940000156002.a.a.a	ENSGT00940000159652.n	ENSGT00940000164772.g.a	ENSGT00390000016776.g	ENSGT00950000183160.B.g	ENSGT00940000156664.c.b	ENSGT00940000158699.e	ENSGT00940000153892.B.a	ENSGT00440000038585.c.g	ENSGT00940000156340.a.d.a	ENSGT00940000161345.a #20	ENSGT00940000166931 #21	ENSGT00940000163205.d.m #22	ENSGT00950000182989.D.a.b.g #24	ENSGT00940000159585.g #25	ENSGT00390000015020.d #26	ENSGT00940000159721.h.i.a #27	ENSGT00510000048902.a.f.a	ENSGT00940000166328.a	ENSGT00390000014845.`b	ENSGT00670000099470.b	ENSGT00950000183197.b.a.b.d	ENSGT01070000253744.a.b.tb.a	ENSGT00940000165531.b.b.a	ENSGT00950000182815.a.a.b.g.b
Common carp reference	MODERN SPECIES	38	ARRDC1 (ENSCCRG00000071985)	glulc (ENSCCRG00000017043)	noc4l (ENSCCRG00000078638)	pus1 (ENSCCRG00000049457)	ULK1 (ENSCCRG00000015425)	MMP17 (ENSCCRG00000015392)	sfswap (ENSCCRG00000039373)	ENSCCRG00000043140	ENSCCRG00000011856	ENSCCRG00000064185	ENSCCRG00000043152	ENSCCRG00000076952	smarcb1b (ENSCCRG00000012751)	ENSCCRG00000012756	chchd10 (ENSCCRG00000017059) #20	gstt1b (ENSCCRG00000060185) #22	idh3b (ENSCCRG00000048275) #24	ptpra (ENSCCRG00000049802) #25	gnrh2 (ENSCCRG00000052123) #26	ENSCCRG00000064003 #27	ENSCCRG00000074322	lhx5 (ENSCCRG00000017204)	mzt2b (ENSCCRG00000076024)	zgc:193801 (ENSCCRG00000063885)	ENSCCRG00000012871	tnfrsfa (ENSCCRG00000040423)	unc5da (ENSCCRG00000003275)	ENSCCRG00000061942	aqp3b (ENSCCRG00000053298)	ENSCCRG00000068815	vps29 (ENSCCRG00000062195)
Golden-line barbel	MODERN SPECIES	354	glulc (ENSSGRG00000050340)	noc4l (ENSSGRG00000050284)	ULK1 (ENSSGRG00000050029)	MMP17 (ENSSGRG00000050021)	sfswap (ENSSGRG00000050014)	ENSSGRG00000050010	ENSSGRG00000050008	ENSSGRG00000050005	ENSSGRG00000050002	ENSSGRG00000049999	ENSSGRG00000049998	smarcb1b (ENSSGRG00000049984)	MMP11 (ENSSGRG00000049983)	chchd10 (ENSSGRG00000049982) #20	ddt (ENSSGRG00000049980) #21	gstt1b (ENSSGRG00000049978) #22	idh3b (ENSSGRG00000049567) #24	ptpra (ENSSGRG00000049524) #25	gnrh2 (ENSSGRG00000049521) #26	GCNT4 (ENSSGRG00000049520) #27	GCNT4 (ENSSGRG00000049519) #27	ENSSGRG00000049517	ENSSGRG00000049516	zgc:193801 (ENSSGRG00000049515)	ENSSGRG00000049514
Cyprininae	ANCESTRAL SPECIES	85	ENSGT00940000155422.cb.b	ENSGT00940000155275.c.a.b	ENSGT00940000156002.a.a.b	ENSGT00940000159652.m	ENSGT00940000164772.g.b	ENSGT00940000164732.C	ENSGT00390000002738.a	ENSGT00390000016776.h	ENSGT00950000183160.B.h	ENSGT00940000156664.c.a	ENSGT00940000158699.f	ENSGT00940000153892.B.b	ENSGT00440000038585.c.h.a.b	ENSGT00940000156340.a.d.b	ENSGT00940000161345.b #20	ENSGT00940000163205.d.n #22	ENSGT01020000230351.D.a.a.a.e.a #23	ENSGT00950000182989.D.a.b.h #24	ENSGT00940000159585.h #25	ENSGT00390000015020.c #26	ENSGT00940000159721.h.i.b #27	ENSGT00940000159721.h.j.a #27	ENSGT00940000166328.b	ENSGT00390000014845.ab	ENSGT00940000156436.w.a	ENSGT01030000234627.a.b.a.b.b.b	ENSGT00950000183203.c.a.b	ENSGT00940000166762.c	ENSGT00940000154702.a.b.a	ENSGT00390000006044.l	ENSGT00730000111140
Goldfish	MODERN SPECIES	13	CACNA1B (ENSCARG00000016324)	ehmt1b (ENSCARG00000015824)	ARRDC1 (ENSCARG00000015803)	glulc (ENSCARG00000015796)	ENSCARG00000015783	noc4l (ENSCARG00000015724)	pus1 (ENSCARG00000015705)	ULK1 (ENSCARG00000014582)	MMP17 (ENSCARG00000014511)	ENSCARG00000014489	ENSCARG00000014461	smarcb1b (ENSCARG00000014424)	MMP11 (ENSCARG00000014415)	chchd10 (ENSCARG00000014400) #20	ddt (ENSCARG00000014393) #21	gstt1b (ENSCARG00000014390) #22	p2rx4a (ENSCARG00000014009) #23	ptpra (ENSCARG00000012252) #25	gnrh2a (ENSCARG00000012201) #26	GCNT4 (ENSCARG00000012193) #27	GCNT4 (ENSCARG00000012190) #27	lhx5 (ENSCARG00000012184)	ENSCARG00000012130	VAV2 (ENSCARG00000010911)	ENSCARG00000010865	dnai1.2 (ENSCARG00000010308)	stx2a (ENSCARG00000010257)	RIMBP2 (ENSCARG00000010157)	ENSCARG00000010135	TMEM132C (ENSCARG00000010129)	smpd4 (ENSCARG00000008444)
Cyprininae_a	ANCESTRAL SPECIES	44	ENSGT00940000155422.cb.b	ENSGT00940000163129	ENSGT00940000155275.c.a.b	ENSGT00940000156002.a.a.b	ENSGT00940000159652.m	ENSGT00940000164772.g.b	ENSGT00940000164732.C	ENSGT00390000002738.a	ENSGT00390000016776.h	ENSGT00940000156664.c.a	ENSGT00940000158699.f	ENSGT00940000153892.B.b	ENSGT00440000038585.c.h.a.b	ENSGT00940000156340.a.d.b	ENSGT00940000161345.b #20	ENSGT00940000163205.d.n #22	ENSGT01020000230351.D.a.a.a.e.a #23	ENSGT00950000182989.D.a.b.h #24	ENSGT00940000159585.h #25	ENSGT00390000015020.c #26	ENSGT00940000159721.h.i.b #27	ENSGT00940000159721.h.j.a #27	ENSGT00510000048902.a.f.b	ENSGT00940000166328.b	ENSGT00390000014845.ab	ENSGT00670000099470.a	ENSGT00950000183197.b.a.b.c	ENSGT01070000253744.a.b.tb.b	ENSGT00940000165531.b.b.b	ENSGT00950000182815.a.a.b.g.a	ENSGT00940000157242.a.b.c
Golden-line barbel	MODERN SPECIES	206	ENSSGRG00000022173	ehmt1b (ENSSGRG00000022235)	ARRDC1 (ENSSGRG00000023781)	glulc (ENSSGRG00000023782)	ENSSGRG00000023784	phpt1 (ENSSGRG00000023786)	noc4l (ENSSGRG00000023787)	ENSSGRG00000023788	ULK1 (ENSSGRG00000023800)	MMP17 (ENSSGRG00000024901)	sfswap (ENSSGRG00000024902)	ENSSGRG00000024903	MMP11 (ENSSGRG00000024906)	chchd10 (ENSSGRG00000024938) #20	ENSSGRG00000024945	gstt1b (ENSSGRG00000024946) #22	p2rx4a (ENSSGRG00000024956) #23	idh3b (ENSSGRG00000025280) #24	ptpra (ENSSGRG00000025428) #25	gnrh2 (ENSSGRG00000025507) #26	GCNT4 (ENSSGRG00000025511) #27	GCNT4 (ENSSGRG00000025512) #27	ENSSGRG00000025513	lhx5 (ENSSGRG00000025515)	mzt2b (ENSSGRG00000025516)	zgc:193801 (ENSSGRG00000025517)	ENSSGRG00000025520	ENSSGRG00000025522	tnfrsfa (ENSSGRG00000025525)	unc5da (ENSSGRG00000025528)	aqp3b (ENSSGRG00000025560)
Common carp reference	MODERN SPECIES	45	ENSCCRG00000059346	ehmt1b (ENSCCRG00000079543)	ARRDC1 (ENSCCRG00000038546)	glulc (ENSCCRG00000059615)	ENSCCRG00000049487	noc4l (ENSCCRG00000017019)	ULK1 (ENSCCRG00000071435)	ENSCCRG00000016994	sfswap (ENSCCRG00000009541)	ENSCCRG00000009525	ENSCCRG00000073205	ENSCCRG00000014748	smarcb1b (ENSCCRG00000047018)	ENSCCRG00000017142	chchd10 (ENSCCRG00000017056) #20	gstt1b (ENSCCRG00000017066) #22	p2rx4a (ENSCCRG00000047638) #23	idh3b (ENSCCRG00000017081) #24	ptpra (ENSCCRG00000048291) #25	gnrh2 (ENSCCRG00000048620) #26	ENSCCRG00000055110 #27	ENSCCRG00000080530 #27	ENSCCRG00000017202	lhx5 (ENSCCRG00000078244)	mzt2b (ENSCCRG00000082452)	zgc:193801 (ENSCCRG00000012680)	ENSCCRG00000026537	tnfrsfa (ENSCCRG00000012874)	unc5da (ENSCCRG00000078566)	aqp3b (ENSCCRG00000055317)	ENSCCRG00000053193
Zebrafish	MODERN SPECIES	13	phpt1 (ENSDARG00000045567)	noc4l (ENSDARG00000045565)	pus1 (ENSDARG00000045562)	ULK1 (ENSDARG00000074481)	MMP17 (ENSDARG00000078915)	sfswap (ENSDARG00000005980)	ENSDARG00000058023	ENSDARG00000095592	ENSDARG00000089758	ENSDARG00000092303	si:dkey-11o15.10 (ENSDARG00000094859)	smarcb1b (ENSDARG00000011594)	ENSDARG00000016718	chchd10 (ENSDARG00000010717) #20	ddt (ENSDARG00000044751) #21	gstt1b (ENSDARG00000017388) #22	p2rx4a (ENSDARG00000044752) #23	idh3b (ENSDARG00000044753) #24	ptpra (ENSDARG00000001769) #25	gnrh2 (ENSDARG00000044754) #26	GCNT4 (ENSDARG00000044755) #27	GCNT4 (ENSDARG00000077550) #27	ENSDARG00000004177	lhx5 (ENSDARG00000057936)	mzt2b (ENSDARG00000057928)	zgc:193801 (ENSDARG00000076552)	CYB561A3 (ENSDARG00000028257)	ENSDARG00000092652	tnfrsfa (ENSDARG00000004451)	unc5da (ENSDARG00000092722)	aqp3b (ENSDARG00000069518)
Clupeiformes	ANCESTRAL SPECIES	99												ENSGT00940000172267	ENSGT01020000230351.D.a.a.b ##23	ENSGT00940000156340.a.d	ENSGT00940000161345 #20	ENSGT00940000163205.d #22	ENSGT01020000230351.D.a.a.a #23	ENSGT00610000086153	ENSGT00390000000571	ENSGT00390000004906.b	ENSGT01030000234555.a.a.a.c.b.b	ENSGT00940000153592.B.b.a.a	ENSGT00940000153491.b.a.l	ENSGT00390000006784	ENSGT00940000156208.i.f	ENSGT00940000161685.A.a.c	ENSGT00940000157734	ENSGT00730000113357	ENSGT00940000165076.a	ENSGT00940000154909.b.b	ENSGT00940000154909.a.a
Atlantic herring	DUPLICATION
Atlantic herring	MODERN SPECIES	10	STT3B (ENSCHAG00000012942)	TGFBR2 (ENSCHAG00000012929)	ENSCHAG00000012075	eomesa (ENSCHAG00000011934)	SLC4A7 (ENSCHAG00000010801)	ENSCHAG00000010636	HERPUD2 (ENSCHAG00000010629)	ENSCHAG00000010618	ENSCHAG00000010580	ADGRB1 (ENSCHAG00000008603)	smap2 (ENSCHAG00000008522)	rims3 (ENSCHAG00000008510)	gstr (ENSCHAG00000008471)	gstr (ENSCHAG00000008456)	ENSCHAG00000008441	gstt1b (ENSCHAG00000008404) #22	gstr (ENSCHAG00000008392)	gstr (ENSCHAG00000007988)	ENSCHAG00000007797	ENSCHAG00000005793	ENSCHAG00000005484	slc6a18 (ENSCHAG00000002089)	tert (ENSCHAG00000001169)	nup42 (ENSCHAG00000000855)	klhl7 (ENSCHAG00000000744)	RAPGEF5 (ENSCHAG00000000509)	ENSCHAG00000022506	TOMM7 (ENSCHAG00000022494)	hycc1 (ENSCHAG00000022476)	CDCA7L (ENSCHAG00000022456)	sp4 (ENSCHAG00000022425)
Atlantic herring	MODERN SPECIES	13	ENSCHAG00000019411	ENSCHAG00000019406	lin54 (ENSCHAG00000019229)	ENSCHAG00000018492	ENSCHAG00000018243	ENSCHAG00000017871	nup155 (ENSCHAG00000017637)	NIPBL (ENSCHAG00000017290)	SLC1A3 (ENSCHAG00000017252)	RANBP3L (ENSCHAG00000017241)	nadk2 (ENSCHAG00000017218)	skp2 (ENSCHAG00000017176)	smarcb1b (ENSCHAG00000017037)	MMP11 (ENSCHAG00000016997)	chchd10 (ENSCHAG00000016962) #20	ENSCHAG00000016945 #22	p2rx4a (ENSCHAG00000016634) #23	SYAP1 (ENSCHAG00000016572)	txlng (ENSCHAG00000016421)	rbb4l (ENSCHAG00000015783)	ZRSR2 (ENSCHAG00000015713)	ap1s2 (ENSCHAG00000015620)	ENSCHAG00000015597	PHKA2 (ENSCHAG00000005966)	ppef1 (ENSCHAG00000005338)	RS1 (ENSCHAG00000005314)	cdkl5 (ENSCHAG00000004919)	SCML2 (ENSCHAG00000004794)	RAI2 (ENSCHAG00000004785)	NHS (ENSCHAG00000004773)	ace2 (ENSCHAG00000003545)