Mus_A	ANCESTRAL SPECIES	11	ENSGT00940000160273.n ##8	ENSGT00940000161306.p #10	ENSGT00940000161258 #11	ENSGT00940000162730 #12	ENSGT00940000163260 #13	ENSGT00940000161475 #14	ENSGT00950000182934.a.b #15	ENSGT00390000013823.b.c.a.a #16	ENSGT00390000013823.b.c.b #17	ENSGT00940000156674 #18	ENSGT00390000018318.u.b.b #19	ENSGT00390000018318.u.a.b ##19	ENSGT00950000182978.A.a.a #20	ENSGT00940000160174 #21	ENSGT01050000248247	ENSGT00940000155712 #22	ENSGT00940000159614 #23	ENSGT00940000155726 #24	ENSGT00950000183442 #25	ENSGT00940000156799 #26	ENSGT00650000094590 #27	ENSGT00940000156274 #28	ENSGT00940000156248 #29	ENSGT00940000156509 #30	ENSGT00940000159413 #31	ENSGT00950000183215.c.a.a #32	ENSGT00950000183163.a.b #33	ENSGT00900000143307 #34	ENSGT00950000182941.a.a.a #35	ENSGT00940000159155 #36	ENSGT00940000157264 #37
Ryukyu mouse	MODERN SPECIES	1	MGP_CAROLIEiJ_G0015184 #7	Taar7e (MGP_CAROLIEiJ_G0015182) #8	Taar7b (MGP_CAROLIEiJ_G0015181) #9	Taar6 (MGP_CAROLIEiJ_G0015180) #10	Taar5 (MGP_CAROLIEiJ_G0015179) #11	Taar4 (MGP_CAROLIEiJ_G0015178) #12	Taar3 (MGP_CAROLIEiJ_G0015177) #13	Taar2 (MGP_CAROLIEiJ_G0015176) #14	Taar1 (MGP_CAROLIEiJ_G0015175) #15	Vnn1 (MGP_CAROLIEiJ_G0015174) #16	Vnn3 (MGP_CAROLIEiJ_G0015173) #17	Slc18b1 (MGP_CAROLIEiJ_G0015172) #18	Rps12 (MGP_CAROLIEiJ_G0015171) #19	Eya4 (MGP_CAROLIEiJ_G0015170) #20	Tcf21 (MGP_CAROLIEiJ_G0015169) #21	Tbpl1 (MGP_CAROLIEiJ_G0015168) #22	Slc2a12 (MGP_CAROLIEiJ_G0015167) #23	Sgk1 (MGP_CAROLIEiJ_G0015166) #24	1700020N01Rik (MGP_CAROLIEiJ_G0015165) #25	Aldh8a1 (MGP_CAROLIEiJ_G0015164) #26	MGP_CAROLIEiJ_G0015163 #27	Hbs1l (MGP_CAROLIEiJ_G0015162) #28	Myb (MGP_CAROLIEiJ_G0015161) #29	Ahi1 (MGP_CAROLIEiJ_G0015160) #30	Pde7b (MGP_CAROLIEiJ_G0015159) #31	Mtfr2 (MGP_CAROLIEiJ_G0015158) #32	Bclaf1 (MGP_CAROLIEiJ_G0015157) #33	MGP_CAROLIEiJ_G0015156 #34	Map7 (MGP_CAROLIEiJ_G0015155) #35	Map3k5 (MGP_CAROLIEiJ_G0015154) #36	Pex7 (MGP_CAROLIEiJ_G0015153) #37
Mus_B	ANCESTRAL SPECIES	10	ENSGT00940000160273.m.a.a.a.b #8	ENSGT00940000160273.m.a.a.a.a #9	ENSGT00940000161306.p #10	ENSGT00940000161258 #11	ENSGT00940000162730 #12	ENSGT00940000163260 #13	ENSGT00940000161475 #14	ENSGT00950000182934.a.b #15	ENSGT00390000013823.b.c.a.a #16	ENSGT00390000013823.b.c.b #17	ENSGT00940000156674 #18	ENSGT00390000018318.u.a.b ##19	ENSGT00950000182978.A.a.a #20	ENSGT00940000160174 #21	ENSGT01050000248247	ENSGT00940000155712 #22	ENSGT00940000159614 #23	ENSGT00940000155726 #24	ENSGT00950000183442 #25	ENSGT00940000156799 #26	ENSGT00650000094590 #27	ENSGT00940000156274 #28	ENSGT00940000156248 #29	ENSGT00940000156509 #30	ENSGT00940000159413 #31	ENSGT00950000183215.c.a.a #32	ENSGT00950000183163.a.b #33	ENSGT00900000143307 #34	ENSGT00950000182941.a.a.a #35	ENSGT00940000159155 #36	ENSGT00940000157264 #37
Mouse	MODERN SPECIES	1	Taar7b (ENSMUSG00000095171) #9	Taar7a (ENSMUSG00000095647) ##8	Taar6 (ENSMUSG00000045111) #10	Taar5 (ENSMUSG00000069706) #11	Taar4 (ENSMUSG00000069707) #12	Taar3 (ENSMUSG00000069708) #13	Taar2 (ENSMUSG00000059763) #14	Taar1 (ENSMUSG00000056379) #15	Vnn1 (ENSMUSG00000037440) #16	Vnn3 (ENSMUSG00000020010) #17	Slc18b1 (ENSMUSG00000037455) #18	Rps12 (ENSMUSG00000061983) ##19	Eya4 (ENSMUSG00000010461) #20	Tcf21 (ENSMUSG00000045680) #21	Gm56675 (ENSMUSG00000118528)	Tbpl1 (ENSMUSG00000071359) #22	Slc2a12 (ENSMUSG00000037490) #23	Raet1d (ENSMUSG00000078452)	H60b (ENSMUSG00000075297)	Raet1e (ENSMUSG00000053219)	Semp2l2b (ENSMUSG00000069712)	Sgk1 (ENSMUSG00000019970) #24	1700020N01Rik (ENSMUSG00000050844) #25	Aldh8a1 (ENSMUSG00000037542) #26	Hbs1l (ENSMUSG00000019977) #28	Myb (ENSMUSG00000019982) #29	Ahi1 (ENSMUSG00000019986) #30	Pde7b (ENSMUSG00000019990) #31	Mtfr2 (ENSMUSG00000019992) #32	Bclaf1 (ENSMUSG00000037608) #33	Map7 (ENSMUSG00000019996) #35
Mus_C	ANCESTRAL SPECIES	7	ENSGT00940000160273.m.a.a.b.a ##8	ENSGT00940000160273.m.a.a.a.b #8	ENSGT00940000160273.m.a.a.a.a #9	ENSGT00940000161306.p #10	ENSGT00940000161258 #11	ENSGT00940000162730 #12	ENSGT00940000163260 #13	ENSGT00940000161475 #14	ENSGT00950000182934.a.b #15	ENSGT00390000013823.b.c.a.a #16	ENSGT00390000013823.b.c.b #17	ENSGT00940000156674 #18	ENSGT00390000018318.u.a.b ##19	ENSGT00950000182978.A.a.a #20	ENSGT00940000160174 #21	ENSGT00940000155712 #22	ENSGT00940000159614 #23	ENSGT00940000155726 #24	ENSGT00950000183442 #25	ENSGT00940000156799 #26	ENSGT00650000094590 #27	ENSGT00940000156274 #28	ENSGT00940000156248 #29	ENSGT00940000156509 #30	ENSGT00940000159413 #31	ENSGT00950000183215.c.a.a #32	ENSGT00950000183163.a.b #33	ENSGT00900000143307 #34	ENSGT00950000182941.a.a.a #35	ENSGT00940000159155 #36	ENSGT00940000157264 #37
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	2819														Eya4 (ENSMSIG00000021698) #20	Tcf21 (ENSMSIG00000021676) #21	ENSMSIG00000021633 #22	Slc2a12 (ENSMSIG00000021623) #23
Steppe mouse	MODERN SPECIES	935															ENSMSIG00000008009	ENSMSIG00000008015 #22
spretus	MODERN SPECIES	1	MGP_SPRETEiJ_G0015992 ##8	MGP_SPRETEiJ_G0015991 #9	MGP_SPRETEiJ_G0015990 #9	Taar6 (MGP_SPRETEiJ_G0015989) #10	Taar5 (MGP_SPRETEiJ_G0015988) #11	Taar4 (MGP_SPRETEiJ_G0015987) #12	Taar3 (MGP_SPRETEiJ_G0015986) #13	Taar2 (MGP_SPRETEiJ_G0015985) #14	Taar1 (MGP_SPRETEiJ_G0015984) #15	Vnn1 (MGP_SPRETEiJ_G0015983) #16	Vnn3 (MGP_SPRETEiJ_G0015982) #17	Slc18b1 (MGP_SPRETEiJ_G0015981) #18	MGP_SPRETEiJ_G0015980 ##19	Eya4 (MGP_SPRETEiJ_G0015979) #20	Tcf21 (MGP_SPRETEiJ_G0015977) #21	Tbpl1 (MGP_SPRETEiJ_G0015976) #22	Slc2a12 (MGP_SPRETEiJ_G0015975) #23	Sgk1 (MGP_SPRETEiJ_G0015974) #24	1700020N01Rik (MGP_SPRETEiJ_G0015973) #25	Aldh8a1 (MGP_SPRETEiJ_G0015972) #26	MGP_SPRETEiJ_G0015971 #27	Hbs1l (MGP_SPRETEiJ_G0015970) #28	Myb (MGP_SPRETEiJ_G0015969) #29	MGP_SPRETEiJ_G0015968 #30	Pde7b (MGP_SPRETEiJ_G0015967) #31	MGP_SPRETEiJ_G0015966 #32	Bclaf1 (MGP_SPRETEiJ_G0015965) #33	MGP_SPRETEiJ_G0015964 #34	Map7 (MGP_SPRETEiJ_G0015963) #35	Map3k5 (MGP_SPRETEiJ_G0015962) #36	Pex7 (MGP_SPRETEiJ_G0015961) #37