Percora_a	ANCESTRAL SPECIES	16	ENSGT00990000214054	ENSGT00940000154216.a #8	ENSGT00940000155453 #7	ENSGT00940000155156.b #12	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #13	ENSGT00520000055616.a #14	ENSGT00390000016589 #15	ENSGT00390000016046 #16	ENSGT00940000155843 #17	ENSGT00390000013087 #10	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985	ENSGT00940000164723 #23	ENSGT00950000183134.c.a.a #24	ENSGT00900000143351 #11	ENSGT00390000000155.a.a #26	ENSGT00940000157141 #27	ENSGT00390000000303 #28	ENSGT00940000157301.b #30	ENSGT00940000155787 #31	ENSGT01030000234595.A.a #32	ENSGT00940000155336 #34	ENSGT00940000159621 #35	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.k.b #37	ENSGT00940000162409.k.a.b ##37
Bovidae	ANCESTRAL SPECIES	16	ENSGT00990000214054	ENSGT00940000154216.a #8	ENSGT00940000155453 #7	ENSGT00940000155156.b #12	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #13	ENSGT00520000055616.a #14	ENSGT00390000016589 #15	ENSGT00390000016046 #16	ENSGT00940000155843 #17	ENSGT00390000013087 #10	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985	ENSGT00940000164723 #23	ENSGT00950000183134.c.a.a #24	ENSGT00900000143351 #11	ENSGT00390000000155.a.a #26	ENSGT00940000157141 #27	ENSGT00390000000303 #28	ENSGT00960000192014 #29	ENSGT00940000157301.b #30	ENSGT00940000155787 #31	ENSGT01030000234595.A.a #32	ENSGT00940000155336 #34	ENSGT00940000159621 #35	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.k.b #37
Caprinae	ANCESTRAL SPECIES	29	ENSGT00440000034259.b	ENSGT00940000154216.a #8	ENSGT00940000155453 #7	ENSGT00940000155156.b #12	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #13	ENSGT00520000055616.a #14	ENSGT00390000016589 #15	ENSGT00390000016046 #16	ENSGT00940000155843 #17	ENSGT00390000013087 #10	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985	ENSGT00940000164723 #23	ENSGT00950000183134.c.a.a #24	ENSGT00900000143351 #11	ENSGT00390000000155.a.a #26	ENSGT00940000157141 #27	ENSGT00390000000303 #28	ENSGT00960000192014 #29	ENSGT00940000157301.b #30	ENSGT00940000155787 #31	ENSGT01030000234595.A.a #32	ENSGT00940000155336 #34	ENSGT00940000159621 #35	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163858.e.a.a
Rambouillet Sheep	MODERN SPECIES	13	CCDC90B (ENSOARG00020024361) #7	ENSOARG00020024238 #8	ENSOARG00020024223 #9	ENSOARG00020024191 #10	ENSOARG00020024175 #11	DLG2 (ENSOARG00020016002) #12	TMEM126B (ENSOARG00020015676) #13	TMEM126A (ENSOARG00020015625) #14	CREBZF (ENSOARG00020015588) #15	CCDC89 (ENSOARG00020015557) #16	SYTL2 (ENSOARG00020014519) #17	ENSOARG00020014438 #18	ENSOARG00020014330 #19	PICALM (ENSOARG00020013638) #20	EED (ENSOARG00020012861) #21	HIKESHI (ENSOARG00020012706) #22	ENSOARG00020018700 #23	ME3 (ENSOARG00020018621) #24	ENSOARG00020018554 #25	PRSS23 (ENSOARG00020018547) #26	FZD4 (ENSOARG00020018518) #27	TMEM135 (ENSOARG00020018240) #28	ENSOARG00020018155 #29	RAB38 (ENSOARG00020018125) #30	CTSC (ENSOARG00020017978) #31	ENSOARG00020017848 #32	ENSOARG00020017819 #33	TYR (ENSOARG00020017770) #34	NOX4 (ENSOARG00020017262) #35	ENSOARG00020017199 #36	ENSOARG00020017116 #37
Goat	MODERN SPECIES	21	PCF11 (ENSCHIG00000020954)	ANKRD42 (ENSCHIG00000018399) #8	CCDC90B (ENSCHIG00000023161) #7	DLG2 (ENSCHIG00000024691) #12	ENSCHIG00000009761	ENSCHIG00000021811	TMEM126B (ENSCHIG00000013101) #13	ENSCHIG00000026099 #14	CREBZF (ENSCHIG00000005919) #15	CCDC89 (ENSCHIG00000004366) #16	ENSCHIG00000019092 #17	CCDC83 (ENSCHIG00000013675) #10	ENSCHIG00000022640	PICALM (ENSCHIG00000015634) #20	EED (ENSCHIG00000015509) #21	HIKESHI (ENSCHIG00000023660) #22	CCDC81 (ENSCHIG00000016243)	ENSCHIG00000002265 #23	ME3 (ENSCHIG00000014285) #24	PRSS23 (ENSCHIG00000010056) #26	FZD4 (ENSCHIG00000026211) #27	ENSCHIG00000019838 #28	ENSCHIG00000013504 #28	RAB38 (ENSCHIG00000024276) #30	CTSC (ENSCHIG00000013901) #31	GRM5 (ENSCHIG00000015813) #32	ENSCHIG00000023687 #32	TYR (ENSCHIG00000004892) #34	NOX4 (ENSCHIG00000021611) #35	FOLH1 (ENSCHIG00000013522)	ENSCHIG00000023324
Bovinae	ANCESTRAL SPECIES	27	ENSGT00440000034259.b	ENSGT00990000214054	ENSGT00940000154216.a #8	ENSGT00940000155453 #7	ENSGT00940000155156.b #12	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #13	ENSGT00520000055616.a #14	ENSGT00390000016589 #15	ENSGT00390000016046 #16	ENSGT00940000155843 #17	ENSGT00390000013087 #10	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985	ENSGT00940000164723 #23	ENSGT00950000183134.c.a.a #24	ENSGT00900000143351 #11	ENSGT00390000000155.a.a #26	ENSGT00940000157141 #27	ENSGT00390000000303 #28	ENSGT00960000192014 #29	ENSGT00940000157301.b #30	ENSGT00940000155787 #31	ENSGT01030000234595.A.a #32	ENSGT00940000155336 #34	ENSGT00940000159621 #35	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.k.b #37
Bos	ANCESTRAL SPECIES	11	ENSGT00440000034259.b	ENSGT00990000214054	ENSGT00940000154216.a #8	ENSGT00940000155453 #7	ENSGT00940000155156.b #12	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #13	ENSGT00520000055616.a #14	ENSGT00390000016589 #15	ENSGT00390000016046 #16	ENSGT00940000155843 #17	ENSGT00390000013087 #10	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985	ENSGT00940000164723 #23	ENSGT00950000183134.c.a.a #24	ENSGT00900000143351 #11	ENSGT00390000000155.a.a #26	ENSGT00940000157141 #27	ENSGT00390000000303 #28	ENSGT00940000157301.b #30	ENSGT00940000155787 #31	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.a.b	ENSGT01030000234595.A.a #32	ENSGT00940000155336 #34	ENSGT00940000159621 #35	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.k.b #37
Bos_a	ANCESTRAL SPECIES	66	ENSGT00440000034259.b	ENSGT00990000214054	ENSGT00940000154216.a #8	ENSGT00940000155453 #7	ENSGT00940000155156.b #12	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #13	ENSGT00520000055616.a #14	ENSGT00390000016589 #15	ENSGT00390000016046 #16	ENSGT00940000155843 #17	ENSGT00390000013087 #10	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985	ENSGT00940000164723 #23	ENSGT00950000183134.c.a.a #24	ENSGT00900000143351 #11	ENSGT00390000000155.a.a #26	ENSGT00940000157141 #27	ENSGT00390000000303 #28	ENSGT00940000157301.b #30	ENSGT00940000155787 #31	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.a.b	ENSGT01030000234595.A.a #32	ENSGT00940000155336 #34	ENSGT00940000159621 #35	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.k.b #37
Domestic yak	MODERN SPECIES	21	DLG2 (ENSBGRG00000022447) #12	ENSBGRG00000023913	ENSBGRG00000023931	ENSBGRG00000023962	ENSBGRG00000023993	ENSBGRG00000024005	ENSBGRG00000024013	TMEM126B (ENSBGRG00000024037) #13	ENSBGRG00000024097 #14	CREBZF (ENSBGRG00000024210) #15	CCDC89 (ENSBGRG00000024223) #16	ENSBGRG00000024253 #17	CCDC83 (ENSBGRG00000024540) #10	PICALM (ENSBGRG00000024679) #20	EED (ENSBGRG00000025126) #21	HIKESHI (ENSBGRG00000025330) #22	CCDC81 (ENSBGRG00000025357)	ME3 (ENSBGRG00000025466) #24	ENSBGRG00000025555 #23	ENSBGRG00000025562 #11	PRSS23 (ENSBGRG00000025570) #26	FZD4 (ENSBGRG00000025585) #27	TMEM135 (ENSBGRG00000025613) #28	RAB38 (ENSBGRG00000025707) #30	CTSC (ENSBGRG00000025732) #31	GRM5 (ENSBGRG00000025754) #32	ENSBGRG00000025770 #32	ENSBGRG00000025774 #34	ENSBGRG00000013459 #34	NOX4 (ENSBGRG00000013584) #35	FOLH1 (ENSBGRG00000013892)
Wild yak	MODERN SPECIES	1529													CCDC83 (ENSBMUG00000019367) #10	PICALM (ENSBMUG00000019285) #20	EED (ENSBMUG00000019111) #21	HIKESHI (ENSBMUG00000019057) #22	CCDC81 (ENSBMUG00000019021)	ENSBMUG00000018940 #23	ME3 (ENSBMUG00000018926) #24	FZD4 (ENSBMUG00000018882) #27
Bos_b	ANCESTRAL SPECIES	10	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b	ENSGT00940000154216.a #8	ENSGT00940000155453 #7	ENSGT00940000155156.b #12	ENSGT01000000214875	ENSGT00520000055616.b #13	ENSGT00520000055616.a #14	ENSGT00390000016589 #15	ENSGT00390000016046 #16	ENSGT00940000155843 #17	ENSGT00390000013087 #10	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985	ENSGT00940000164723 #23	ENSGT00950000183134.c.a.a #24	ENSGT00900000143351 #11	ENSGT00390000000155.a.a #26	ENSGT00940000157141 #27	ENSGT00390000000303 #28	ENSGT00940000157301.b #30	ENSGT00940000155787 #31	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.a.b	ENSGT01030000234595.A.a #32	ENSGT00940000155336 #34	ENSGT00940000159621 #35	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.k.b #37
Cow	MODERN SPECIES	21	RAB30 (ENSBTAG00000002417)	PCF11 (ENSBTAG00000015277)	ANKRD42 (ENSBTAG00000001391) #8	CCDC90B (ENSBTAG00000007479) #7	ENSBTAG00000048705	DLG2 (ENSBTAG00000027868) #12	ENSBTAG00000053418	TMEM126B (ENSBTAG00000020596) #13	TMEM126A (ENSBTAG00000000451) #14	CREBZF (ENSBTAG00000000455) #15	CCDC89 (ENSBTAG00000000457) #16	SYTL2 (ENSBTAG00000000460) #17	CCDC83 (ENSBTAG00000011132) #10	PICALM (ENSBTAG00000001657) #20	EED (ENSBTAG00000007847) #21	HIKESHI (ENSBTAG00000019995) #22	CCDC81 (ENSBTAG00000020009)	ENSBTAG00000046374 #23	ME3 (ENSBTAG00000000246) #24	PRSS23 (ENSBTAG00000015177) #26	FZD4 (ENSBTAG00000040128) #27	TMEM135 (ENSBTAG00000005482) #28	ENSBTAG00000050697	ENSBTAG00000049723	RAB38 (ENSBTAG00000015793) #30	CTSC (ENSBTAG00000011100) #31	ENSBTAG00000034845	GRM5 (ENSBTAG00000048061) #32	TYR (ENSBTAG00000011813) #34	NOX4 (ENSBTAG00000018540) #35	FOLH1B (ENSBTAG00000007397)
Hybrid Bos Indicus	MODERN SPECIES	21	ANKRD42 (ENSBIXG00005019460) #8	CCDC90B (ENSBIXG00005003146) #7	DLG2 (ENSBIXG00005000048) #12	ENSBIXG00005016035	ENSBIXG00005016027	ENSBIXG00005007506	ENSBIXG00005015966	TMEM126B (ENSBIXG00005006137) #13	TMEM126A (ENSBIXG00005015931) #14	CREBZF (ENSBIXG00005015909) #15	CCDC89 (ENSBIXG00005002504) #16	ENSBIXG00005015861 #17	CCDC83 (ENSBIXG00005015679) #10	PICALM (ENSBIXG00005015588) #20	EED (ENSBIXG00005015358) #21	HIKESHI (ENSBIXG00005015272) #22	CCDC81 (ENSBIXG00005015221)	ENSBIXG00005015176 #23	ME3 (ENSBIXG00005015127) #24	ENSBIXG00005006228 #11	PRSS23 (ENSBIXG00005015048) #26	FZD4 (ENSBIXG00005002201) #27	TMEM135 (ENSBIXG00005007500) #28	ENSBIXG00005014836	ENSBIXG00005006132 #29	ENSBIXG00005014818	RAB38 (ENSBIXG00005014802) #30	CTSC (ENSBIXG00005005707) #31	ENSBIXG00005014734 #32	ENSBIXG00005002053	ENSBIXG00005014663 #32
American bison	MODERN SPECIES	3238	RAB30 (ENSBBBG00000019557)	PCF11 (ENSBBBG00000007044)	ANKRD42 (ENSBBBG00000019636) #8	CCDC90B (ENSBBBG00000019665) #7	DLG2 (ENSBBBG00000007047) #12	ENSBBBG00000008368	ENSBBBG00000008951	ENSBBBG00000020046 #13	TMEM126A (ENSBBBG00000005096) #14	CREBZF (ENSBBBG00000005090) #15	CCDC89 (ENSBBBG00000005086) #16	ENSBBBG00000020192 #17	CCDC83 (ENSBBBG00000005453) #10	PICALM (ENSBBBG00000006910) #20	EED (ENSBBBG00000000678) #21	HIKESHI (ENSBBBG00000000640) #22	CCDC81 (ENSBBBG00000000571)	ENSBBBG00000000561 #23	ME3 (ENSBBBG00000000531) #24	PRSS23 (ENSBBBG00000000524) #26	FZD4 (ENSBBBG00000005521) #27
Siberian musk deer	MODERN SPECIES	334							DLG2 (ENSMMSG00000012131) #12	TMEM126B (ENSMMSG00000011791) #13	TMEM126A (ENSMMSG00000011765) #14	CREBZF (ENSMMSG00000011747) #15	CCDC89 (ENSMMSG00000011737) #16	ENSMMSG00000011390 #17	CCDC83 (ENSMMSG00000011291) #10	PICALM (ENSMMSG00000010915) #20	EED (ENSMMSG00000010761) #21	HIKESHI (ENSMMSG00000010677) #22	CCDC81 (ENSMMSG00000010200)	ENSMMSG00000010151	ENSMMSG00000010131 #11	ME3 (ENSMMSG00000010096) #24	PRSS23 (ENSMMSG00000010081) #26	FZD4 (ENSMMSG00000010064) #27	TMEM135 (ENSMMSG00000009825) #28	RAB38 (ENSMMSG00000009772) #30	CTSC (ENSMMSG00000009733) #31	GRM5 (ENSMMSG00000009613) #32	TYR (ENSMMSG00000009581) #34	NOX4 (ENSMMSG00000009089) #35	FOLH1 (ENSMMSG00000008725)	ENSMMSG00000008663	ENSMMSG00000008585