Sarcopterygii ANCESTRAL SPECIES 52 ENSGT00940000154730.b ENSGT00940000158099 ENSGT00940000165087 ENSGT00940000166008 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00940000167196 ENSGT01030000234598.b.a.b #36 ENSGT00940000154174 #37 ENSGT00940000154981 ENSGT00940000160117 Tetrapoda ANCESTRAL SPECIES ENSGT00940000158099 ENSGT00940000165087 ENSGT00940000166008 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01030000234954 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b #36 ENSGT00940000154174 #37 ENSGT00940000154981 ENSGT00940000162341 ENSGT00940000160117 Amniota ANCESTRAL SPECIES ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00940000155156.a.b ##14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00950000185226 ENSGT00940000167196 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174 #37 Mammalia ANCESTRAL SPECIES 7 ENSGT00940000158099 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00950000185226 ENSGT00940000167196 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174 #37 Theria ANCESTRAL SPECIES 15 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00940000155156.a.b ##14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00950000185226 ENSGT00940000167196 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174 #37 Eutheria ANCESTRAL SPECIES 3 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00940000155156.a.b ##14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00950000185226 ENSGT00940000167196 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000160005.A ENSGT00940000163858 Boreoeutheria ANCESTRAL SPECIES 1 ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00940000155156.a.b ##14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00950000185226 ENSGT00940000167196 ENSGT01030000234598.b.a.b.k.a #34 Euarchontoglires ANCESTRAL SPECIES 1 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00990000214054 ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00950000185226 ENSGT00940000167196 ENSGT01030000234598.b.a.b.k.a #34 Primates ANCESTRAL SPECIES ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00950000185226 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409 ENSGT00940000163419 Strepsirrhini ANCESTRAL SPECIES 6 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b.`b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a.`b #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174 #37 ENSGT00940000154981 Lemuriformes ANCESTRAL SPECIES 13 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b.`b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a.`b #16 ENSGT00390000016589 #17 ENSGT00910000148212 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000160005.A.l ENSGT00940000163440 ENSGT00940000160005.A.k ENSGT00940000163858 Mouse lemur MODERN SPECIES 27 USP35 (ENSMICG00000038576) #7 KCTD21 (ENSMICG00000046215) #8 ALG8 (ENSMICG00000015000) #9 NDUFC2 (ENSMICG00000041506) #10 KCTD14 (ENSMICG00000044183) #11 ENSMICG00000043874 #12 ENSMICG00000027485 #13 ENSMICG00000009022 #14 TMEM126B (ENSMICG00000029604) #15 TMEM126A (ENSMICG00000005510) #16 CREBZF (ENSMICG00000033683) #17 SYTL2 (ENSMICG00000005519) #18 CCDC83 (ENSMICG00000017254) #19 PICALM (ENSMICG00000017261) #20 ENSMICG00000010728 #21 HIKESHI (ENSMICG00000000946) #22 CCDC81 (ENSMICG00000000948) #23 ENSMICG00000037743 #24 ME3 (ENSMICG00000000951) #25 PRSS23 (ENSMICG00000026361) #26 FZD4 (ENSMICG00000012533) #27 TMEM135 (ENSMICG00000013387) #28 RAB38 (ENSMICG00000028169) #29 CTSC (ENSMICG00000002445) #30 GRM5 (ENSMICG00000002451) #31 TYR (ENSMICG00000037850) #32 NOX4 (ENSMICG00000014398) #33 ENSMICG00000042150 #34 ENSMICG00000013580 #35 NAALAD2 (ENSMICG00000015630) #36 ENSMICG00000015646 #37 Lemuriformes_a ANCESTRAL SPECIES 133 ENSGT00940000165087 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b.`b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a.`b #16 ENSGT00910000148212 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000163858 ENSGT00940000160005.A.k ENSGT00940000163440 ENSGT00940000160005.A.l Greater bamboo lemur MODERN SPECIES 625 ENSPSMG00000007219 ENSPSMG00000007223 TMEM126B (ENSPSMG00000007232) #15 ENSPSMG00000007247 #16 ENSPSMG00000007260 CCDC89 (ENSPSMG00000007263) SYTL2 (ENSPSMG00000007523) #18 CCDC83 (ENSPSMG00000007641) #19 ENSPSMG00000007653 PICALM (ENSPSMG00000008098) #20 ENSPSMG00000008423 ENSPSMG00000008429 ENSPSMG00000008449 EED (ENSPSMG00000008532) #21 HIKESHI (ENSPSMG00000008554) #22 CCDC81 (ENSPSMG00000008616) #23 ME3 (ENSPSMG00000008707) #25 PRSS23 (ENSPSMG00000008732) #26 FZD4 (ENSPSMG00000008734) #27 TMEM135 (ENSPSMG00000008862) #28 RAB38 (ENSPSMG00000008937) #29 CTSC (ENSPSMG00000008979) #30 GRM5 (ENSPSMG00000009090) #31 TYR (ENSPSMG00000009145) #32 NOX4 (ENSPSMG00000009300) #33 FOLH1 (ENSPSMG00000009438) #34 ENSPSMG00000009461 ENSPSMG00000009467 ENSPSMG00000009478 ENSPSMG00000009540 Coquerels sifaka MODERN SPECIES 237 PRCP (ENSPCOG00000027887) ENSPCOG00000027868 RAB30 (ENSPCOG00000017316) PCF11 (ENSPCOG00000000051) ANKRD42 (ENSPCOG00000026124) CCDC90B (ENSPCOG00000021879) DLG2 (ENSPCOG00000019969) #14 TMEM126B (ENSPCOG00000020968) #15 TMEM126A (ENSPCOG00000020359) #16 ENSPCOG00000015922 SYTL2 (ENSPCOG00000009450) #18 CCDC83 (ENSPCOG00000008593) #19 PICALM (ENSPCOG00000026679) #20 ENSPCOG00000024002 EED (ENSPCOG00000022510) #21 HIKESHI (ENSPCOG00000028239) #22 CCDC81 (ENSPCOG00000024443) #23 ME3 (ENSPCOG00000027098) #25 FZD4 (ENSPCOG00000018933) #27 TMEM135 (ENSPCOG00000015029) #28 RAB38 (ENSPCOG00000020800) #29 CTSC (ENSPCOG00000001859) #30 ENSPCOG00000024115 GRM5 (ENSPCOG00000028721) #31 TYR (ENSPCOG00000016235) #32 NOX4 (ENSPCOG00000017092) #33 FOLH1 (ENSPCOG00000018014) #34 ENSPCOG00000017327 ENSPCOG00000024227 ENSPCOG00000023420 Bushbaby MODERN SPECIES 116 PCF11 (ENSOGAG00000001905) ANKRD42 (ENSOGAG00000001906) CCDC90B (ENSOGAG00000006817) ENSOGAG00000026562 DLG2 (ENSOGAG00000010597) #14 ENSOGAG00000029637 ENSOGAG00000027183 ENSOGAG00000005403 #16 CREBZF (ENSOGAG00000027039) #17 CCDC89 (ENSOGAG00000005407) ENSOGAG00000030902 #18 CCDC83 (ENSOGAG00000013946) #19 PICALM (ENSOGAG00000013950) #20 ENSOGAG00000029699 EED (ENSOGAG00000025611) #21 HIKESHI (ENSOGAG00000013958) #22 CCDC81 (ENSOGAG00000013961) #23 ENSOGAG00000025640 ME3 (ENSOGAG00000013965) #25 PRSS23 (ENSOGAG00000011479) #26 ENSOGAG00000032179 FZD4 (ENSOGAG00000011478) #27 TMEM135 (ENSOGAG00000013804) #28 ENSOGAG00000027554 ENSOGAG00000027235 RAB38 (ENSOGAG00000004961) #29 CTSC (ENSOGAG00000009168) #30 GRM5 (ENSOGAG00000003814) #31 ENSOGAG00000024204 #32 NOX4 (ENSOGAG00000012261) #33 FOLH1 (ENSOGAG00000002014) #34 Haplorrhini ANCESTRAL SPECIES ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00950000185226 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409 ENSGT00940000163419 Tarsier DUPLICATION Tarsier MODERN SPECIES 1516 CCDC83 (ENSTSYG00000008696) #19 PICALM (ENSTSYG00000004088) #20 EED (ENSTSYG00000005232) #21 HIKESHI (ENSTSYG00000003299) #22 CCDC81 (ENSTSYG00000007216) #23 ENSTSYG00000028689 Tarsier MODERN SPECIES 3354 RPAP3 (ENSTSYG00000006882) ENDOU (ENSTSYG00000001211) RAPGEF3 (ENSTSYG00000006424) ENSTSYG00000029114 #22 SLC48A1 (ENSTSYG00000034171) HDAC7 (ENSTSYG00000033525) Simiiformes ANCESTRAL SPECIES ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00860000135923 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00950000185226 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000163778 ENSGT00940000160005.A Platyrrhini ANCESTRAL SPECIES 3 ENSGT00940000154216.a ENSGT00940000155453 ENSGT00860000135923 ENSGT00940000155156.b #14 ENSGT00940000154847.b ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00910000148212 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00940000157141 #27 ENSGT00390000008820.e.b.b ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000163778 ENSGT00940000160005.A.i ENSGT00940000163440 ENSGT00940000163419.j Mas night monkey MODERN SPECIES 575 PCF11 (ENSANAG00000037724) ENSANAG00000024905 ENSANAG00000029298 DLG2 (ENSANAG00000031143) #14 ENSANAG00000032550 ENSANAG00000037228 ENSANAG00000037632 ENSANAG00000029976 TMEM126B (ENSANAG00000025056) #15 ENSANAG00000026301 #16 CREBZF (ENSANAG00000034171) #17 SYTL2 (ENSANAG00000028146) #18 CCDC83 (ENSANAG00000032623) #19 PICALM (ENSANAG00000019901) #20 EED (ENSANAG00000011962) #21 HIKESHI (ENSANAG00000022595) #22 ENSANAG00000038314 CCDC81 (ENSANAG00000036233) #23 ME3 (ENSANAG00000036581) #25 FZD4 (ENSANAG00000020728) #27 ENSANAG00000033368 TMEM135 (ENSANAG00000038000) #28 Cebidae ANCESTRAL SPECIES ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00910000148212 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00940000157141 #27 ENSGT00390000008820.e.b.b ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000163778 ENSGT00940000160005.A.i ENSGT00940000163440 ENSGT00940000163419.j Marmoset MODERN SPECIES 2 ENSCJAG00000074858 ENSCJAG00000036997 ENSCJAG00000082882 ENSCJAG00000085884 ENSCJAG00000070224 DLG2 (ENSCJAG00000014492) #14 TMEM126B (ENSCJAG00000014472) #15 ENSCJAG00000014466 #16 ENSCJAG00000043995 CCDC89 (ENSCJAG00000014446) SYTL2 (ENSCJAG00000014359) #18 CCDC83 (ENSCJAG00000014339) #19 ENSCJAG00000086029 PICALM (ENSCJAG00000014262) #20 EED (ENSCJAG00000014209) #21 HIKESHI (ENSCJAG00000041472) #22 CCDC81 (ENSCJAG00000012092) #23 ME3 (ENSCJAG00000000649) #25 ENSCJAG00000079494 FZD4 (ENSCJAG00000000657) #27 ENSCJAG00000076219 ENSCJAG00000086105 ENSCJAG00000086260 TMEM135 (ENSCJAG00000000661) #28 ENSCJAG00000055696 ENSCJAG00000080496 RAB38 (ENSCJAG00000000671) #29 CTSC (ENSCJAG00000000679) #30 ENSCJAG00000032975 GRM5 (ENSCJAG00000000695) #31 TYR (ENSCJAG00000000698) #32 Cebidae_a ANCESTRAL SPECIES 73 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00860000135923 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00940000157141 #27 ENSGT00390000008820.e.b.b ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000163778 ENSGT00940000160005.A.i ENSGT00940000163440 ENSGT00940000163419.j Capuchin MODERN SPECIES 442 TMEM126B (ENSCCAG00000030490) #15 ENSCCAG00000016707 #16 CREBZF (ENSCCAG00000018390) #17 SYTL2 (ENSCCAG00000027399) #18 CCDC83 (ENSCCAG00000036956) #19 ENSCCAG00000035690 PICALM (ENSCCAG00000032962) #20 EED (ENSCCAG00000010220) #21 HIKESHI (ENSCCAG00000031050) #22 CCDC81 (ENSCCAG00000035713) #23 ME3 (ENSCCAG00000023036) #25 FZD4 (ENSCCAG00000018431) #27 ENSCCAG00000023395 TMEM135 (ENSCCAG00000015547) #28 Bolivian squirrel monkey DUPLICATION Bolivian squirrel monkey MODERN SPECIES 51 ENSSBOG00000026951 ENSSBOG00000036210 BCLAF3 (ENSSBOG00000031024) MAP7D2 (ENSSBOG00000029797) ENSSBOG00000031558 ENSSBOG00000029635 RPS6KA3 (ENSSBOG00000034830) ENSSBOG00000018382 CNKSR2 (ENSSBOG00000029741) SMPX (ENSSBOG00000033495) MBTPS2 (ENSSBOG00000029363) SMS (ENSSBOG00000024222) ENSSBOG00000000154 PHEX (ENSSBOG00000035899) ENSSBOG00000022205 ENSSBOG00000017959 #22 PTCHD1 (ENSSBOG00000022861) PRDX4 (ENSSBOG00000026851) ACOT9 (ENSSBOG00000035947) SAT1 (ENSSBOG00000023952) ENSSBOG00000023578 CXorf58 (ENSSBOG00000023363) KLHL15 (ENSSBOG00000011468) EIF2S3 (ENSSBOG00000022630) ENSSBOG00000006323 ZFX (ENSSBOG00000031673) PDK3 (ENSSBOG00000032538) PCYT1B (ENSSBOG00000023731) POLA1 (ENSSBOG00000019711) ARX (ENSSBOG00000022256) ENSSBOG00000035884 Bolivian squirrel monkey MODERN SPECIES 111 ANKRD42 (ENSSBOG00000029776) CCDC90B (ENSSBOG00000031087) ENSSBOG00000032196 ENSSBOG00000030642 DLG2 (ENSSBOG00000034048) #14 ENSSBOG00000002491 TMEM126B (ENSSBOG00000029314) #15 ENSSBOG00000031600 #16 ENSSBOG00000031353 CREBZF (ENSSBOG00000021121) #17 SYTL2 (ENSSBOG00000022671) #18 CCDC83 (ENSSBOG00000024146) #19 ENSSBOG00000023637 PICALM (ENSSBOG00000022605) #20 EED (ENSSBOG00000020361) #21 ENSSBOG00000035641 #22 ENSSBOG00000026631 CCDC81 (ENSSBOG00000029201) #23 ME3 (ENSSBOG00000022193) #25 ENSSBOG00000026687 FZD4 (ENSSBOG00000026619) #27 TMEM135 (ENSSBOG00000020475) #28 RAB38 (ENSSBOG00000033877) #29 CTSC (ENSSBOG00000031425) #30 GRM5 (ENSSBOG00000029620) #31 ENSSBOG00000025801 TYR (ENSSBOG00000034806) #32 NOX4 (ENSSBOG00000031083) #33 FOLH1 (ENSSBOG00000030773) #34 TRIM77 (ENSSBOG00000029725) Catarrhini ANCESTRAL SPECIES 1 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00950000182971.B.b.c.a.a ENSGT00940000155453 ENSGT00860000135923 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00550000074935.v ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00390000016475.e.a.a.b ENSGT00910000146946 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00910000147856 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00950000185226 Cercopithecidae ANCESTRAL SPECIES ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00950000182971.B.b.c.a.a ENSGT00940000155453 ENSGT00860000135923 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00550000074935.v ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00390000016475.e.a.a.b ENSGT00910000146946 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT00910000147216 ENSGT01030000234595.A.a #31 ENSGT00910000147856 ENSGT00940000155336 #32 ENSGT00940000159621 #33 Cercopithecinae ANCESTRAL SPECIES 3 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00950000182971.B.b.c.a.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00550000074935.v ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00390000016475.e.a.a.b ENSGT00910000146946 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT00910000147216 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 Vervet Monkey MODERN SPECIES DDIAS (ENSCSAG00000003710) RAB30 (ENSCSAG00000003704) PCF11 (ENSCSAG00000003702) ANKRD42 (ENSCSAG00000003699) CCDC90B (ENSCSAG00000003693) DLG2 (ENSCSAG00000003691) #14 TMEM126B (ENSCSAG00000003685) #15 TMEM126A (ENSCSAG00000003683) #16 CREBZF (ENSCSAG00000000613) #17 CCDC89 (ENSCSAG00000000612) SYTL2 (ENSCSAG00000003677) #18 CCDC83 (ENSCSAG00000003666) #19 ENSCSAG00000000611 PICALM (ENSCSAG00000003661) #20 EED (ENSCSAG00000003653) #21 HIKESHI (ENSCSAG00000003649) #22 CCDC81 (ENSCSAG00000003644) #23 ME3 (ENSCSAG00000003640) #25 PRSS23 (ENSCSAG00000000610) #26 FZD4 (ENSCSAG00000003633) #27 TMEM135 (ENSCSAG00000003625) #28 RAB38 (ENSCSAG00000003620) #29 CTSC (ENSCSAG00000003618) #30 GRM5 (ENSCSAG00000003616) #31 TYR (ENSCSAG00000003613) #32 NOX4 (ENSCSAG00000003604) #33 FOLH1 (ENSCSAG00000003592) #34 TRIM77 (ENSCSAG00000003587) ENSCSAG00000003583 ENSCSAG00000003576 ENSCSAG00000003574 Cercopithecinae_a ANCESTRAL SPECIES 2 ENSGT00940000154216.a ENSGT00950000182971.B.b.c.a.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00940000154847.b ENSGT00940000153402.c.a.a.b.d ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00550000074935.v ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00390000016475.e.a.a.b ENSGT00910000146946 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT00910000147216 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 Macaca ANCESTRAL SPECIES 2 ENSGT00950000182971.B.b.c.a.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00940000154847.b ENSGT00940000153402.c.a.a.b.d ENSGT00520000055616.b.e #15 ENSGT00520000055616.b.f #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00550000074935.v ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00390000016475.e.a.a.b ENSGT00910000146946 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT00910000147216 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000163778 Pig-tailed macaque MODERN SPECIES 423 ANKRD42 (ENSMNEG00000044572) ENSMNEG00000042667 CCDC90B (ENSMNEG00000040708) DLG2 (ENSMNEG00000032861) #14 ENSMNEG00000035794 ENSMNEG00000041407 TMEM126B (ENSMNEG00000038548) #15 TMEM126A (ENSMNEG00000033570) #16 CREBZF (ENSMNEG00000038550) #17 CCDC89 (ENSMNEG00000023949) SYTL2 (ENSMNEG00000012179) #18 CCDC83 (ENSMNEG00000042390) #19 PICALM (ENSMNEG00000029285) #20 ENSMNEG00000042451 EED (ENSMNEG00000027523) #21 HIKESHI (ENSMNEG00000035878) #22 CCDC81 (ENSMNEG00000033044) #23 ME3 (ENSMNEG00000015271) #25 ENSMNEG00000038710 FZD4 (ENSMNEG00000029276) #27 TMEM135 (ENSMNEG00000045398) #28 ENSMNEG00000030149 ENSMNEG00000043896 RAB38 (ENSMNEG00000027238) #29 CTSC (ENSMNEG00000030747) #30 ENSMNEG00000018809 GRM5 (ENSMNEG00000034358) #31 TYR (ENSMNEG00000036611) #32 NOX4 (ENSMNEG00000044084) #33 FOLH1 (ENSMNEG00000038167) #34 TRIM77 (ENSMNEG00000034320) Macaca_a ANCESTRAL SPECIES 3 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00950000182971.B.b.c.a.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01100000263493.a.b.a.a.a.a.a.a.a.b.a.a.b.a.a.a ENSGT00520000055616.b.f #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT01100000263509.a.a.b.a.a.b ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000163778 ENSGT00940000163440.b.a ENSGT00940000163419.g ENSGT00940000163440.b.b Rhesus MODERN SPECIES 5 DLG2 (ENSMMUG00000007921) #14 ENSMMUG00000061300 ENSMMUG00000060971 ENSMMUG00000051769 ENSMMUG00000050245 ENSMMUG00000050119 TMEM126B (ENSMMUG00000016540) #15 TMEM126A (ENSMMUG00000057373) #16 CREBZF (ENSMMUG00000016543) #17 CCDC89 (ENSMMUG00000063415) SYTL2 (ENSMMUG00000012449) #18 ENSMMUG00000058091 CCDC83 (ENSMMUG00000019617) #19 PICALM (ENSMMUG00000019618) #20 EED (ENSMMUG00000019621) #21 HIKESHI (ENSMMUG00000017730) #22 CCDC81 (ENSMMUG00000013045) #23 ME3 (ENSMMUG00000013055) #25 PRSS23 (ENSMMUG00000003717) #26 FZD4 (ENSMMUG00000004048) #27 TMEM135 (ENSMMUG00000010229) #28 RAB38 (ENSMMUG00000016006) #29 CTSC (ENSMMUG00000022139) #30 GRM5 (ENSMMUG00000010184) #31 ENSMMUG00000051617 TYR (ENSMMUG00000011115) #32 NOX4 (ENSMMUG00000011116) #33 FOLH1 (ENSMMUG00000012596) #34 TRIM77 (ENSMMUG00000048340) ENSMMUG00000051536 ENSMMUG00000064584 Crab-eating macaque MODERN SPECIES 5 ENSMFAG00000056564 ENSMFAG00000046206 ENSMFAG00000059686 ENSMFAG00000052763 ENSMFAG00000037137 #15 TMEM126A (ENSMFAG00000000919) #16 ENSMFAG00000059074 CCDC89 (ENSMFAG00000015719) SYTL2 (ENSMFAG00000032887) #18 ENSMFAG00000056194 CCDC83 (ENSMFAG00000002840) #19 PICALM (ENSMFAG00000002978) #20 ENSMFAG00000059633 ENSMFAG00000049118 EED (ENSMFAG00000045418) #21 HIKESHI (ENSMFAG00000035626) #22 CCDC81 (ENSMFAG00000003801) #23 ME3 (ENSMFAG00000037695) #25 PRSS23 (ENSMFAG00000036910) #26 FZD4 (ENSMFAG00000034431) #27 TMEM135 (ENSMFAG00000016730) #28 RAB38 (ENSMFAG00000044903) #29 ENSMFAG00000049993 CTSC (ENSMFAG00000031718) #30 GRM5 (ENSMFAG00000034520) #31 ENSMFAG00000057700 ENSMFAG00000051174 ENSMFAG00000048157 ENSMFAG00000056499 TYR (ENSMFAG00000045366) #32 NOX4 (ENSMFAG00000002005) #33 Cercopithecinae_b ANCESTRAL SPECIES 32 ENSGT00950000182971.B.b.c.a.a ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00940000154847.b ENSGT00940000153402.c.a.a.b.d ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00550000074935.v ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00390000016475.e.a.a.b ENSGT00910000146946 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT00910000147216 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 Olive baboon MODERN SPECIES 3 CCDC90B (ENSPANG00000018014) ANKRD42 (ENSPANG00000009554) ENSPANG00000047282 ENSPANG00000048439 ENSPANG00000046399 ENSPANG00000042996 DLG2 (ENSPANG00000007863) #14 TMEM126B (ENSPANG00000014631) #15 TMEM126A (ENSPANG00000011636) #16 ENSPANG00000035892 CCDC89 (ENSPANG00000048782) SYTL2 (ENSPANG00000010114) #18 CCDC83 (ENSPANG00000019126) #19 PICALM (ENSPANG00000019177) #20 EED (ENSPANG00000023331) #21 HIKESHI (ENSPANG00000006476) #22 CCDC81 (ENSPANG00000011943) #23 ENSPANG00000038398 ME3 (ENSPANG00000019664) #25 PRSS23 (ENSPANG00000001585) #26 FZD4 (ENSPANG00000007432) #27 TMEM135 (ENSPANG00000016447) #28 RAB38 (ENSPANG00000007862) #29 ENSPANG00000040539 CTSC (ENSPANG00000006475) #30 ENSPANG00000041846 GRM5 (ENSPANG00000010013) #31 ENSPANG00000042320 TYR (ENSPANG00000050970) #32 NOX4 (ENSPANG00000011635) #33 ENSPANG00000037841 Cercopithecinae_d ANCESTRAL SPECIES 27 ENSGT00940000154216.a ENSGT00950000182971.B.b.c.a.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00940000154847.b ENSGT00940000153402.c.a.a.b.d ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00550000074935.v ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT01050000244956.b.c.a.b ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00390000016475.e.a.a.b ENSGT00910000146946 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT00910000147216 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000163778 Drill MODERN SPECIES 912 ENSMLEG00000042181 TMEM126B (ENSMLEG00000038201) #15 TMEM126A (ENSMLEG00000034150) #16 CREBZF (ENSMLEG00000040560) #17 SYTL2 (ENSMLEG00000032099) #18 CCDC83 (ENSMLEG00000041777) #19 PICALM (ENSMLEG00000038207) #20 ENSMLEG00000035359 EED (ENSMLEG00000032137) #21 HIKESHI (ENSMLEG00000006177) #22 CCDC81 (ENSMLEG00000034883) #23 ME3 (ENSMLEG00000044075) #25 FZD4 (ENSMLEG00000040936) #27 ENSMLEG00000041504 TMEM135 (ENSMLEG00000029558) #28 ENSMLEG00000033478 ENSMLEG00000039077 RAB38 (ENSMLEG00000031633) #29 CTSC (ENSMLEG00000032637) #30 ENSMLEG00000026308 GRM5 (ENSMLEG00000042600) #31 TYR (ENSMLEG00000043191) #32 NOX4 (ENSMLEG00000040210) #33 FOLH1 (ENSMLEG00000044022) #34 TRIM77 (ENSMLEG00000044304) Sooty mangabey MODERN SPECIES 196 DLG2 (ENSCATG00000039862) #14 ENSCATG00000035140 ENSCATG00000034074 TMEM126B (ENSCATG00000029506) #15 TMEM126A (ENSCATG00000029388) #16 CREBZF (ENSCATG00000036954) #17 CCDC89 (ENSCATG00000016164) SYTL2 (ENSCATG00000031643) #18 CCDC83 (ENSCATG00000006895) #19 PICALM (ENSCATG00000044739) #20 ENSCATG00000037926 EED (ENSCATG00000032277) #21 HIKESHI (ENSCATG00000032118) #22 CCDC81 (ENSCATG00000042506) #23 ME3 (ENSCATG00000038267) #25 ENSCATG00000015649 FZD4 (ENSCATG00000012598) #27 TMEM135 (ENSCATG00000001206) #28 ENSCATG00000032850 ENSCATG00000034224 RAB38 (ENSCATG00000034576) #29 CTSC (ENSCATG00000028370) #30 ENSCATG00000017286 GRM5 (ENSCATG00000039645) #31 TYR (ENSCATG00000007854) #32 NOX4 (ENSCATG00000034813) #33 FOLH1 (ENSCATG00000030078) #34 TRIM77 (ENSCATG00000032552) Rhinopithecus ANCESTRAL SPECIES 265 ENSGT00940000155156.b #14 ENSGT00940000154847.b ENSGT00940000153402.c.a.a.b.d ENSGT00390000008688.j ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00940000167729 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00390000016475.e.a.a.b ENSGT00910000146946 Black snub-nosed monkey MODERN SPECIES 1515 ENSRBIG00000024137 #14 ENSRBIG00000034832 ENSRBIG00000039292 ENSRBIG00000038408 TMEM126B (ENSRBIG00000027901) #15 TMEM126A (ENSRBIG00000044867) #16 CREBZF (ENSRBIG00000033657) #17 SYTL2 (ENSRBIG00000027668) #18 CCDC83 (ENSRBIG00000041473) #19 PICALM (ENSRBIG00000028102) #20 ENSRBIG00000006505 ENSRBIG00000031252 EED (ENSRBIG00000043003) #21 HIKESHI (ENSRBIG00000030285) #22 CCDC81 (ENSRBIG00000044110) #23 ENSRBIG00000006153 ME3 (ENSRBIG00000038261) #25 PRSS23 (ENSRBIG00000011058) #26 FZD4 (ENSRBIG00000037688) #27 TMEM135 (ENSRBIG00000040442) #28 ENSRBIG00000008442 Golden snub-nosed monkey MODERN SPECIES 3048 CCDC83 (ENSRROG00000029691) #19 PICALM (ENSRROG00000042437) #20 ENSRROG00000043397 EED (ENSRROG00000033300) #21 HIKESHI (ENSRROG00000044938) #22 CCDC81 (ENSRROG00000034536) #23 ME3 (ENSRROG00000029877) #25 FZD4 (ENSRROG00000009179) #27 TMEM135 (ENSRROG00000026706) #28 ENSRROG00000029825 ENSRROG00000029619 Hominoidea ANCESTRAL SPECIES 1 ENSGT00940000154216.a ENSGT00950000182971.B.b.c.a.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00940000154847.b ENSGT00940000153402.c.b.b.e.a ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00550000074935.v ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00390000016475.e.a.a.b ENSGT00910000146946 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00910000147856 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 Hominidae ANCESTRAL SPECIES 1 ENSGT00940000154216.a ENSGT00950000182971.B.b.c.a.a.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00940000154847.b ENSGT00940000153402.c.b.b.e.a ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00550000074935.v ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00390000016475.e.a.a.b ENSGT00910000146946 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00910000147856 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 Homo/Pan/Gorilla group ANCESTRAL SPECIES 8 ENSGT00940000154216.a ENSGT00950000182971.B.b.c.a.a.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00940000154847.b ENSGT00940000153402.c.b.b.e.a ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00550000074935.v ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT01050000244956.b.c.a.b ENSGT00910000148359 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00390000016475.e.a.a.b ENSGT00910000146946 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00910000147856 ENSGT00940000155336 #32 ENSGT00940000159621 #33 Homo/Pan group ANCESTRAL SPECIES 1 ENSGT00940000154216.a ENSGT00950000182971.B.b.c.a.a.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00940000154847.b ENSGT00940000153402.c.b.b.e.a ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00550000074935.v ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT01050000244956.b.c.a.b ENSGT00910000148359 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00390000016475.e.a.a.b ENSGT00910000146946 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00910000147856 ENSGT00940000155336 #32 ENSGT00940000159621 #33 Pan ANCESTRAL SPECIES 1 ENSGT00940000154216.a ENSGT00950000182971.B.b.c.a.a.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00940000154847.b ENSGT00940000153402.c.b.b.e.a ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00550000074935.v ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT01050000244956.b.c.a.b ENSGT00910000148359 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00390000016475.e.a.a.b ENSGT00910000146946 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00910000147856 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 Chimpanzee MODERN SPECIES 2 ANKRD42 (ENSPTRG00000004128) CCDC90B (ENSPTRG00000004129) DLG2 (ENSPTRG00000004131) #14 ENSPTRG00000045384 ENSPTRG00000043496 TMEM126B (ENSPTRG00000004133) #15 ENSPTRG00000049899 TMEM126A (ENSPTRG00000004134) #16 CREBZF (ENSPTRG00000046588) #17 CCDC89 (ENSPTRG00000028447) SYTL2 (ENSPTRG00000004137) #18 CCDC83 (ENSPTRG00000004139) #19 PICALM (ENSPTRG00000004141) #20 ENSPTRG00000050577 EED (ENSPTRG00000047379) #21 HIKESHI (ENSPTRG00000004144) #22 CCDC81 (ENSPTRG00000004145) #23 ME3 (ENSPTRG00000004146) #25 ENSPTRG00000052198 ENSPTRG00000047974 FZD4 (ENSPTRG00000004148) #27 TMEM135 (ENSPTRG00000052201) #28 ENSPTRG00000043512 RAB38 (ENSPTRG00000004151) #29 CTSC (ENSPTRG00000004152) #30 GRM5 (ENSPTRG00000004153) #31 ENSPTRG00000050427 TYR (ENSPTRG00000004155) #32 NOX4 (ENSPTRG00000004156) #33 FOLH1 (ENSPTRG00000004159) #34 ENSPTRG00000051097 Bonobo MODERN SPECIES 2 PCF11 (ENSPPAG00000009517) ANKRD42 (ENSPPAG00000030979) ENSPPAG00000037079 CCDC90B (ENSPPAG00000031300) DLG2 (ENSPPAG00000040464) #14 ENSPPAG00000030712 ENSPPAG00000035286 #15 TMEM126A (ENSPPAG00000030419) #16 CREBZF (ENSPPAG00000039767) #17 CCDC89 (ENSPPAG00000024671) SYTL2 (ENSPPAG00000031499) #18 CCDC83 (ENSPPAG00000018209) #19 PICALM (ENSPPAG00000036162) #20 ENSPPAG00000040243 EED (ENSPPAG00000042452) #21 HIKESHI (ENSPPAG00000037523) #22 CCDC81 (ENSPPAG00000033187) #23 ME3 (ENSPPAG00000027117) #25 ENSPPAG00000030561 ENSPPAG00000040183 FZD4 (ENSPPAG00000039896) #27 TMEM135 (ENSPPAG00000017375) #28 ENSPPAG00000029704 ENSPPAG00000025428 RAB38 (ENSPPAG00000037174) #29 CTSC (ENSPPAG00000039886) #30 GRM5 (ENSPPAG00000028715) #31 ENSPPAG00000037909 TYR (ENSPPAG00000028935) #32 ENSPPAG00000043311 ENSPPAG00000040587 Human MODERN SPECIES 2 PRCP (ENSG00000137509) DDIAS (ENSG00000165490) RAB30 (ENSG00000137502) PCF11 (ENSG00000165494) ANKRD42 (ENSG00000137494) CCDC90B (ENSG00000137500) DLG2 (ENSG00000150672) #14 TMEM126B (ENSG00000171204) #15 TMEM126A (ENSG00000171202) #16 CREBZF (ENSG00000137504) #17 CCDC89 (ENSG00000179071) SYTL2 (ENSG00000137501) #18 CCDC83 (ENSG00000150676) #19 PICALM (ENSG00000073921) #20 EED (ENSG00000074266) #21 HIKESHI (ENSG00000149196) #22 CCDC81 (ENSG00000149201) #23 ME3 (ENSG00000151376) #25 PRSS23 (ENSG00000150687) #26 FZD4 (ENSG00000174804) #27 TMEM135 (ENSG00000166575) #28 RAB38 (ENSG00000123892) #29 CTSC (ENSG00000109861) #30 GRM5 (ENSG00000168959) #31 TYR (ENSG00000077498) #32 NOX4 (ENSG00000086991) #33 TRIM77 (ENSG00000214414) TRIM49 (ENSG00000168930) #35 TRIM64B (ENSG00000189253) TRIM49D1 (ENSG00000223417) TRIM49D2 (ENSG00000233802) Gorilla MODERN SPECIES 2 CCDC90B (ENSGGOG00000009045) ENSGGOG00000041726 DLG2 (ENSGGOG00000034908) #14 ENSGGOG00000038080 ENSGGOG00000023558 ENSGGOG00000022340 TMEM126B (ENSGGOG00000002136) #15 TMEM126A (ENSGGOG00000027742) #16 CREBZF (ENSGGOG00000006942) #17 CCDC89 (ENSGGOG00000001828) SYTL2 (ENSGGOG00000001830) #18 CCDC83 (ENSGGOG00000002315) #19 PICALM (ENSGGOG00000009116) #20 ENSGGOG00000024786 EED (ENSGGOG00000007517) #21 HIKESHI (ENSGGOG00000023168) #22 CCDC81 (ENSGGOG00000012103) #23 ME3 (ENSGGOG00000009837) #25 ENSGGOG00000037978 ENSGGOG00000043394 FZD4 (ENSGGOG00000037053) #27 TMEM135 (ENSGGOG00000002577) #28 ENSGGOG00000038789 ENSGGOG00000043000 RAB38 (ENSGGOG00000008277) #29 CTSC (ENSGGOG00000002117) #30 GRM5 (ENSGGOG00000008825) #31 ENSGGOG00000024146 ENSGGOG00000043221 #35 TYR (ENSGGOG00000009122) #32 ENSGGOG00000003220 Orangutan MODERN SPECIES 2 DDIAS (ENSPPYG00000003732) RAB30 (ENSPPYG00000041373) PCF11 (ENSPPYG00000003734) ANKRD42 (ENSPPYG00000003735) CCDC90B (ENSPPYG00000003736) DLG2 (ENSPPYG00000003737) #14 TMEM126A (ENSPPYG00000003738) #16 CREBZF (ENSPPYG00000003740) #17 CCDC89 (ENSPPYG00000003741) SYTL2 (ENSPPYG00000003742) #18 CCDC83 (ENSPPYG00000003743) #19 ENSPPYG00000038885 PICALM (ENSPPYG00000003744) #20 ENSPPYG00000032045 EED (ENSPPYG00000003745) #21 HIKESHI (ENSPPYG00000003746) #22 CCDC81 (ENSPPYG00000003747) #23 ENSPPYG00000036300 ME3 (ENSPPYG00000003748) #25 PRSS23 (ENSPPYG00000003749) #26 FZD4 (ENSPPYG00000003750) #27 TMEM135 (ENSPPYG00000003751) #28 RAB38 (ENSPPYG00000003752) #29 CTSC (ENSPPYG00000003753) #30 GRM5 (ENSPPYG00000003754) #31 TYR (ENSPPYG00000003755) #32 NOX4 (ENSPPYG00000003756) #33 FOLH1 (ENSPPYG00000003757) #34 TRIM77 (ENSPPYG00000003758) ENSPPYG00000004089 ENSPPYG00000040623 #35 Gibbon DUPLICATION Gibbon MODERN SPECIES TYK2 (ENSNLEG00000012193) CDC37 (ENSNLEG00000012202) PDE4A (ENSNLEG00000012207) ENSNLEG00000012241 ENSNLEG00000032388 ATG4D (ENSNLEG00000012244) ENSNLEG00000012256 CDKN2D (ENSNLEG00000012265) ENSNLEG00000012270 ENSNLEG00000035868 SLC44A2 (ENSNLEG00000012275) ILF3 (ENSNLEG00000012290) QTRT1 (ENSNLEG00000012343) DNM2 (ENSNLEG00000012352) TMED1 (ENSNLEG00000012365) ENSNLEG00000027586 #22 ENSNLEG00000031325 CARM1 (ENSNLEG00000012371) YIPF2 (ENSNLEG00000012384) TIMM29 (ENSNLEG00000012388) SMARCA4 (ENSNLEG00000012389) ENSNLEG00000012467 SPC24 (ENSNLEG00000012487) KANK2 (ENSNLEG00000012488) ENSNLEG00000012494 DOCK6 (ENSNLEG00000026530) ENSNLEG00000029153 RAB3D (ENSNLEG00000012495) ENSNLEG00000012497 CCDC159 (ENSNLEG00000012498) ENSNLEG00000012508 Gibbon MODERN SPECIES 5 ENSNLEG00000033396 ANKRD42 (ENSNLEG00000016524) CCDC90B (ENSNLEG00000016478) ENSNLEG00000035779 ENSNLEG00000028515 DLG2 (ENSNLEG00000016423) #14 TMEM126B (ENSNLEG00000016414) #15 TMEM126A (ENSNLEG00000016408) #16 CREBZF (ENSNLEG00000031587) #17 CCDC89 (ENSNLEG00000019101) SYTL2 (ENSNLEG00000016320) #18 CCDC83 (ENSNLEG00000016302) #19 PICALM (ENSNLEG00000016266) #20 ENSNLEG00000016264 EED (ENSNLEG00000016231) #21 HIKESHI (ENSNLEG00000016224) #22 CCDC81 (ENSNLEG00000016195) #23 ME3 (ENSNLEG00000016167) #25 ENSNLEG00000027369 FZD4 (ENSNLEG00000034493) #27 ENSNLEG00000028034 TMEM135 (ENSNLEG00000016150) #28 ENSNLEG00000031173 RAB38 (ENSNLEG00000016147) #29 CTSC (ENSNLEG00000016103) #30 ENSNLEG00000033791 GRM5 (ENSNLEG00000016099) #31 TYR (ENSNLEG00000016083) #32 NOX4 (ENSNLEG00000015992) #33 ENSNLEG00000015991 FOLH1 (ENSNLEG00000015891) #34 Euarchontoglires_A ANCESTRAL SPECIES 1 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00990000214054 ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174 #37 Tree shrew MODERN SPECIES 5448 EED (ENSTBEG00000008428) #21 ENSTBEG00000009192 #22 Glires ANCESTRAL SPECIES 1 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00990000214054 ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174 #37 Lagomorpha ANCESTRAL SPECIES 5 ENSGT00940000158099 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174 #37 ENSGT00940000154981 Rabbit MODERN SPECIES ENSOCUG00000030982 CCDC90B (ENSOCUG00000026829) ANKRD42 (ENSOCUG00000004475) ENSOCUG00000035571 ENSOCUG00000038610 DLG2 (ENSOCUG00000010534) #14 ENSOCUG00000016529 #15 ENSOCUG00000016534 #16 CREBZF (ENSOCUG00000016544) #17 CCDC89 (ENSOCUG00000016547) SYTL2 (ENSOCUG00000013753) #18 ENSOCUG00000033217 CCDC83 (ENSOCUG00000009770) #19 PICALM (ENSOCUG00000023809) #20 EED (ENSOCUG00000021263) #21 HIKESHI (ENSOCUG00000013108) #22 ENSOCUG00000037210 CCDC81 (ENSOCUG00000007318) #23 ENSOCUG00000027723 ME3 (ENSOCUG00000012005) #25 ENSOCUG00000031072 ENSOCUG00000036239 PRSS23 (ENSOCUG00000004137) #26 FZD4 (ENSOCUG00000006445) #27 TMEM135 (ENSOCUG00000000713) #28 ENSOCUG00000032429 ENSOCUG00000014522 #29 CTSC (ENSOCUG00000014527) #30 ENSOCUG00000012817 #31 ENSOCUG00000029319 #31 TYR (ENSOCUG00000009965) #32 Pika MODERN SPECIES 3533 ENSOPRG00000013844 #21 HIKESHI (ENSOPRG00000013869) #22 CCDC81 (ENSOPRG00000013884) #23 ME3 (ENSOPRG00000013901) #25 PRSS23 (ENSOPRG00000013925) #26 ENSOPRG00000013932 #27 Rodentia ANCESTRAL SPECIES 1 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00990000214054 ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174 #37 Rodentia_A ANCESTRAL SPECIES 1 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453.n.b ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174.f #37 ENSGT00940000154981 Sciuridae ANCESTRAL SPECIES 2 ENSGT00940000158099 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453.o ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000163440 ENSGT00940000160005.A.n ENSGT00940000162409 Marmotini ANCESTRAL SPECIES 28 ENSGT00940000158099 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453.o ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409.a ENSGT00940000162409.b ENSGT00940000163419 Alpin marmot MODERN SPECIES 3 PRCP (ENSMMMG00000006496) DDIAS (ENSMMMG00000006475) RAB30 (ENSMMMG00000006458) PCF11 (ENSMMMG00000006414) ANKRD42 (ENSMMMG00000006331) CCDC90B (ENSMMMG00000006292) ENSMMMG00000006288 DLG2 (ENSMMMG00000005928) #14 TMEM126B (ENSMMMG00000005835) #15 ENSMMMG00000005829 #16 CCDC89 (ENSMMMG00000005814) ENSMMMG00000005468 #18 CCDC83 (ENSMMMG00000005426) #19 PICALM (ENSMMMG00000005144) #20 EED (ENSMMMG00000005118) #21 HIKESHI (ENSMMMG00000005096) #22 CCDC81 (ENSMMMG00000005061) #23 ME3 (ENSMMMG00000004996) #25 PRSS23 (ENSMMMG00000004975) #26 FZD4 (ENSMMMG00000004931) #27 TMEM135 (ENSMMMG00000004893) #28 RAB38 (ENSMMMG00000004867) #29 CTSC (ENSMMMG00000004793) #30 GRM5 (ENSMMMG00000004503) #31 TYR (ENSMMMG00000004445) #32 NOX4 (ENSMMMG00000004402) #33 ENSMMMG00000004374 FOLH1 (ENSMMMG00000004192) #34 Marmotini_b ANCESTRAL SPECIES 13 ENSGT00940000158099 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453.n.a ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409.a ENSGT00940000162409.b Arctic ground squirrel MODERN SPECIES 249 HIKESHI (ENSUPAG00010006622) #22 CCDC81 (ENSUPAG00010006635) #23 ME3 (ENSUPAG00010006666) #25 PRSS23 (ENSUPAG00010006681) #26 FZD4 (ENSUPAG00010006688) #27 TMEM135 (ENSUPAG00010006691) #28 RAB38 (ENSUPAG00010006729) #29 ENSUPAG00010006747 #30 GRM5 (ENSUPAG00010006754) #31 ENSUPAG00010006768 ENSUPAG00010006773 #31 TYR (ENSUPAG00010006775) #32 NOX4 (ENSUPAG00010006782) #33 ENSUPAG00010006804 #34 ENSUPAG00010006822 ENSUPAG00010007051 Squirrel MODERN SPECIES 98 DDIAS (ENSSTOG00000004978) RAB30 (ENSSTOG00000020966) PCF11 (ENSSTOG00000005515) ANKRD42 (ENSSTOG00000001620) CCDC90B (ENSSTOG00000001632) ENSSTOG00000024205 DLG2 (ENSSTOG00000002895) #14 TMEM126B (ENSSTOG00000002952) #15 ENSSTOG00000016101 #16 CREBZF (ENSSTOG00000002975) #17 CCDC89 (ENSSTOG00000002976) SYTL2 (ENSSTOG00000027973) #18 CCDC83 (ENSSTOG00000008671) #19 PICALM (ENSSTOG00000008689) #20 EED (ENSSTOG00000004680) #21 HIKESHI (ENSSTOG00000004702) #22 CCDC81 (ENSSTOG00000014479) #23 ENSSTOG00000028574 ME3 (ENSSTOG00000014488) #25 PRSS23 (ENSSTOG00000007434) #26 FZD4 (ENSSTOG00000007437) #27 Eurasian red squirrel MODERN SPECIES 2 PCF11 (ENSSVLG00005015739) ANKRD42 (ENSSVLG00005015819) ENSSVLG00005015896 ENSSVLG00005015927 ENSSVLG00005015977 ENSSVLG00005016059 DLG2 (ENSSVLG00005016472) #14 TMEM126B (ENSSVLG00005019236) #15 TMEM126A (ENSSVLG00005019268) #16 CREBZF (ENSSVLG00005019339) #17 CCDC89 (ENSSVLG00005019395) SYTL2 (ENSSVLG00005019752) #18 CCDC83 (ENSSVLG00005020010) #19 PICALM (ENSSVLG00005020135) #20 EED (ENSSVLG00005020425) #21 HIKESHI (ENSSVLG00005020558) #22 CCDC81 (ENSSVLG00005020655) #23 ENSSVLG00005021006 ME3 (ENSSVLG00005021021) #25 ENSSVLG00005021162 ENSSVLG00005021180 PRSS23 (ENSSVLG00005021223) #26 FZD4 (ENSSVLG00005021251) #27 TMEM135 (ENSSVLG00005021306) #28 RAB38 (ENSSVLG00005021462) #29 CTSC (ENSSVLG00005021500) #30 GRM5 (ENSSVLG00005021581) #31 ENSSVLG00005021721 TYR (ENSSVLG00005021737) #32 NOX4 (ENSSVLG00005021836) #33 ENSSVLG00005022060 Hystricomorpha ANCESTRAL SPECIES 5 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453.n.b.b ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174.f #37 ENSGT00940000154981 ENSGT00940000162341 Hystricomorpha_a ANCESTRAL SPECIES 10 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453.n.b.b ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174.f #37 ENSGT00940000154981 ENSGT00940000162341 Hystricomorpha_b ANCESTRAL SPECIES 5 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453.n.b.a.a.b ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174.f #37 ENSGT00940000154981 ENSGT00940000162341 Degu DUPLICATION Degu MODERN SPECIES 90 PCF11 (ENSODEG00000003874) ANKRD42 (ENSODEG00000003920) CCDC90B (ENSODEG00000003995) DLG2 (ENSODEG00000004167) #14 ENSODEG00000004281 TMEM126B (ENSODEG00000004299) #15 ENSODEG00000004318 #16 CREBZF (ENSODEG00000004328) #17 CCDC89 (ENSODEG00000004335) ENSODEG00000004345 #18 ENSODEG00000004377 CCDC83 (ENSODEG00000004398) #19 PICALM (ENSODEG00000004438) #20 ENSODEG00000004459 ENSODEG00000004489 #21 ENSODEG00000005068 #22 CCDC81 (ENSODEG00000005105) #23 ME3 (ENSODEG00000005138) #25 PRSS23 (ENSODEG00000019151) #26 FZD4 (ENSODEG00000005182) #27 TMEM135 (ENSODEG00000005219) #28 Degu MODERN SPECIES 153 CENPX (ENSODEG00000011229) ASPSCR1 (ENSODEG00000009351) NOTUM (ENSODEG00000008781) ENSODEG00000009159 ENSODEG00000008271 MAFG (ENSODEG00000008381) SIRT7 (ENSODEG00000008260) PCYT2 (ENSODEG00000008954) ANAPC11 (ENSODEG00000007931) ALYREF (ENSODEG00000008359) ENSODEG00000009046 P4HB (ENSODEG00000009563) PPP1R27 (ENSODEG00000010740) MCRIP1 (ENSODEG00000007940) GCGR (ENSODEG00000008460) ENSODEG00000008220 #22 SLC25A10 (ENSODEG00000008541) MRPL12 (ENSODEG00000008765) HGS (ENSODEG00000007976) ARL16 (ENSODEG00000008186) CCDC137 (ENSODEG00000009523) OXLD1 (ENSODEG00000009077) PDE6G (ENSODEG00000009291) TSPAN10 (ENSODEG00000009598) NPLOC4 (ENSODEG00000008315) ENSODEG00000008214 FSCN2 (ENSODEG00000008403) ENSODEG00000008412 BAHCC1 (ENSODEG00000009968) ENSODEG00000009081 NDUFAF8 (ENSODEG00000009889) Long-tailed chinchilla MODERN SPECIES 121 RAB30 (ENSCLAG00000014030) ENSCLAG00000017890 PCF11 (ENSCLAG00000013830) ANKRD42 (ENSCLAG00000015518) CCDC90B (ENSCLAG00000015859) ENSCLAG00000014879 DLG2 (ENSCLAG00000013708) #14 TMEM126B (ENSCLAG00000015945) #15 TMEM126A (ENSCLAG00000013581) #16 CREBZF (ENSCLAG00000014349) #17 CCDC89 (ENSCLAG00000018101) ENSCLAG00000015658 #18 CCDC83 (ENSCLAG00000013107) #19 PICALM (ENSCLAG00000014073) #20 EED (ENSCLAG00000014597) #21 HIKESHI (ENSCLAG00000015127) #22 CCDC81 (ENSCLAG00000015703) #23 ME3 (ENSCLAG00000014004) #25 PRSS23 (ENSCLAG00000014382) #26 FZD4 (ENSCLAG00000013230) #27 TMEM135 (ENSCLAG00000012648) #28 RAB38 (ENSCLAG00000013006) #29 CTSC (ENSCLAG00000015662) #30 ENSCLAG00000014570 #31 TYR (ENSCLAG00000016284) #32 ENSCLAG00000013267 NOX4 (ENSCLAG00000014011) #33 FOLH1 (ENSCLAG00000014594) #34 NAALAD2 (ENSCLAG00000012474) #36 ENSCLAG00000014963 #37 FAT3 (ENSCLAG00000013669) Guinea pig MODERN SPECIES 40 TENM4 (ENSCPOG00000002931) PRCP (ENSCPOG00000030619) DDIAS (ENSCPOG00000013049) RAB30 (ENSCPOG00000005047) PCF11 (ENSCPOG00000004103) ANKRD42 (ENSCPOG00000011236) CCDC90B (ENSCPOG00000011822) DLG2 (ENSCPOG00000010885) #14 TMEM126B (ENSCPOG00000000924) #15 TMEM126A (ENSCPOG00000032709) #16 CREBZF (ENSCPOG00000000925) #17 ENSCPOG00000006998 #18 CCDC83 (ENSCPOG00000015279) #19 PICALM (ENSCPOG00000020758) #20 EED (ENSCPOG00000001815) #21 HIKESHI (ENSCPOG00000020182) #22 CCDC81 (ENSCPOG00000004853) #23 ME3 (ENSCPOG00000004861) #25 PRSS23 (ENSCPOG00000031160) #26 FZD4 (ENSCPOG00000014369) #27 TMEM135 (ENSCPOG00000033735) #28 RAB38 (ENSCPOG00000033635) #29 CTSC (ENSCPOG00000014848) #30 GRM5 (ENSCPOG00000009056) #31 ENSCPOG00000039497 TYR (ENSCPOG00000010608) #32 NOX4 (ENSCPOG00000040335) #33 FOLH1 (ENSCPOG00000003797) #34 NAALAD2 (ENSCPOG00000038440) #36 CHORDC1 (ENSCPOG00000022614) #37 ENSCPOG00000010626 Rodentia_B ANCESTRAL SPECIES 33 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00990000214054 ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 Kangaroo rat MODERN SPECIES 341 ENSDORG00000009384 ENSDORG00000010504 Pcf11 (ENSDORG00000010050) Ankrd42 (ENSDORG00000013726) Ccdc90b (ENSDORG00000009418) Dlg2 (ENSDORG00000010409) #14 Tmem126b (ENSDORG00000006407) #15 Tmem126a (ENSDORG00000026208) #16 ENSDORG00000006410 #18 ENSDORG00000025554 #18 Ccdc83 (ENSDORG00000006094) #19 Picalm (ENSDORG00000006095) #20 ENSDORG00000024919 ENSDORG00000027843 Eed (ENSDORG00000004240) #21 Hikeshi (ENSDORG00000026855) #22 Ccdc81 (ENSDORG00000004452) #23 ENSDORG00000028501 Me3 (ENSDORG00000004453) #25 Prss23 (ENSDORG00000023881) #26 Fzd4 (ENSDORG00000025486) #27 Tmem135 (ENSDORG00000011193) #28 ENSDORG00000028149 ENSDORG00000029361 Rab38 (ENSDORG00000002058) #29 Ctsc (ENSDORG00000014120) #30 Grm5 (ENSDORG00000001327) #31 ENSDORG00000024265 Tyr (ENSDORG00000002350) #32 Myomorpha ANCESTRAL SPECIES 13 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00990000214054 ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01100000263570.A ENSGT01090000260024.A.a.b.a.a ENSGT01050000244828.c.b.b.b.c.a.a.a Lesser Egyptian jerboa MODERN SPECIES 65 ENSJJAG00000012172 Ankrd42 (ENSJJAG00000023528) ENSJJAG00000023792 ENSJJAG00000011365 ENSJJAG00000014690 ENSJJAG00000010286 Dlg2 (ENSJJAG00000023731) #14 Tmem126b (ENSJJAG00000012522) #15 Tmem126a (ENSJJAG00000008852) #16 Crebzf (ENSJJAG00000010759) #17 ENSJJAG00000010545 #18 ENSJJAG00000017139 #18 Ccdc83 (ENSJJAG00000017603) #19 ENSJJAG00000001614 #20 Eed (ENSJJAG00000016121) #21 Hikeshi (ENSJJAG00000012398) #22 ENSJJAG00000022293 Ccdc81 (ENSJJAG00000011496) #23 Me3 (ENSJJAG00000022815) #25 Prss23 (ENSJJAG00000010057) #26 Fzd4 (ENSJJAG00000008823) #27 Tmem135 (ENSJJAG00000013241) #28 Rab38 (ENSJJAG00000020660) #29 Ctsc (ENSJJAG00000010794) #30 Grm5 (ENSJJAG00000024148) #31 ENSJJAG00000003405 #31 Tyr (ENSJJAG00000005553) #32 Nox4 (ENSJJAG00000022117) #33 Folh1 (ENSJJAG00000021601) #34 ENSJJAG00000021619 ENSJJAG00000020270 Muroidea ANCESTRAL SPECIES 12 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00990000214054 ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01100000263570.A ENSGT01090000260024.A.a.b.a.a ENSGT01050000244828.c.b.b.b.c.a.a.a Muroidea_A ANCESTRAL SPECIES ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00990000214054 ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01100000263570.A ENSGT01090000260024.A.a.b.a.a ENSGT01050000244828.c.b.b.b.c.a.a.a.c Cricetidae ANCESTRAL SPECIES 1 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00990000214054 ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01100000263570.A ENSGT01090000260024.A.a.b.a.a ENSGT01050000244828.c.b.b.b.c.a.a.a.c Cricetidae_B ANCESTRAL SPECIES 26 ENSGT00980000198692 ENSGT00940000158099.f ENSGT00940000158099.e ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00990000214054 ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01050000244828.c.b.b.b.c.a.a.a.d.a.a ENSGT01090000260024.A.a.b.a.a ENSGT01050000244828.c.b.b.b.c.a.a.a.c Prairie vole DUPLICATION Prairie vole MODERN SPECIES 9 Or13g1 (ENSMOCG00000006498) Fam181b (ENSMOCG00000019765) ENSMOCG00000013603 ENSMOCG00000012985 Prcp (ENSMOCG00000012404) ENSMOCG00000009821 Pcf11 (ENSMOCG00000001560) Ankrd42 (ENSMOCG00000000292) Ccdc90b (ENSMOCG00000020349) ENSMOCG00000020913 #14 ENSMOCG00000019058 #17 Ccdc89 (ENSMOCG00000008424) ENSMOCG00000014020 #18 Picalm (ENSMOCG00000010921) #20 Eed (ENSMOCG00000000447) #21 ENSMOCG00000019586 #22 Ccdc81 (ENSMOCG00000007045) #23 Me3 (ENSMOCG00000005796) #25 Prss23 (ENSMOCG00000022033) #26 ENSMOCG00000007773 Tenm4 (ENSMOCG00000007967) Nars2 (ENSMOCG00000004938) Gab2 (ENSMOCG00000016973) Usp35 (ENSMOCG00000015178) #7 Kctd21 (ENSMOCG00000009332) #8 Alg8 (ENSMOCG00000018035) #9 Ndufc2 (ENSMOCG00000014768) #10 Thrsp (ENSMOCG00000014398) Ints4 (ENSMOCG00000015641) #12 Aamdc (ENSMOCG00000013242) Rsf1 (ENSMOCG00000018606) Prairie vole MODERN SPECIES 8 Prcc (ENSMOCG00000015302) Mrpl24 (ENSMOCG00000019591) Rrnad1 (ENSMOCG00000016923) Isg20l2 (ENSMOCG00000000875) Crabp2 (ENSMOCG00000017322) Nes (ENSMOCG00000013062) Bcan (ENSMOCG00000000154) Hapln2 (ENSMOCG00000014313) ENSMOCG00000008875 Naxe (ENSMOCG00000016457) ENSMOCG00000014279 Iqgap3 (ENSMOCG00000020658) Mef2d (ENSMOCG00000003757) ENSMOCG00000008030 Rhbg (ENSMOCG00000005326) ENSMOCG00000022002 #22 Tsacc (ENSMOCG00000013419) Cct3 (ENSMOCG00000010144) Glmp (ENSMOCG00000009096) Tmem79 (ENSMOCG00000017414) Smg5 (ENSMOCG00000016590) Paqr6 (ENSMOCG00000006437) ENSMOCG00000019680 ENSMOCG00000018426 Slc25a44 (ENSMOCG00000014671) Sema4a (ENSMOCG00000022467) Lmna (ENSMOCG00000011854) Mex3a (ENSMOCG00000017881) Rab25 (ENSMOCG00000010953) Lamtor2 (ENSMOCG00000018988) ENSMOCG00000013140 Northern American deer mouse MODERN SPECIES P2ry2 (ENSPEMG00000031410) Fchsd2 (ENSPEMG00000022517) Atg16l2 (ENSPEMG00000021325) Stard10 (ENSPEMG00000020876) Arap1 (ENSPEMG00000021221) ENSPEMG00000030063 Pde2a (ENSPEMG00000026748) ENSPEMG00000029000 ENSPEMG00000025401 ENSPEMG00000019643 #16 Ccdc89 (ENSPEMG00000013266) ENSPEMG00000019500 #18 ENSPEMG00000028604 Picalm (ENSPEMG00000020088) #20 Eed (ENSPEMG00000019315) #21 Hikeshi (ENSPEMG00000020488) #22 Ccdc81 (ENSPEMG00000017793) #23 Me3 (ENSPEMG00000001307) #25 ENSPEMG00000027884 Prss23 (ENSPEMG00000015023) #26 Fzd4 (ENSPEMG00000000061) #27 Tmem135 (ENSPEMG00000009485) #28 ENSPEMG00000014375 Rab38 (ENSPEMG00000022645) #29 Ctsc (ENSPEMG00000023091) #30 Grm5 (ENSPEMG00000022095) #31 Tyr (ENSPEMG00000023104) #32 Nox4 (ENSPEMG00000021901) #33 Folh1 (ENSPEMG00000022051) #34 ENSPEMG00000025927 ENSPEMG00000027271 Cricetinae ANCESTRAL SPECIES 15 ENSGT00940000158099.e ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01050000244828.c.b.b.b.c.a.a.a.d.a.a.a ENSGT01090000260086.E.b ENSGT00940000162666 ENSGT01060000248581.C.a.a Chinese hamster chok1gshd MODERN SPECIES 101 Pcf11 (ENSCGRG00001014596) Ankrd42 (ENSCGRG00001009333) Ccdc90b (ENSCGRG00001017562) ENSCGRG00001006228 #14 ENSCGRG00001004849 #14 ENSCGRG00001020141 Tmem126b (ENSCGRG00001018676) #15 ENSCGRG00001000040 #16 Crebzf (ENSCGRG00001009481) #17 Ccdc89 (ENSCGRG00001000722) ENSCGRG00001008518 #18 Ccdc83 (ENSCGRG00001016931) #19 ENSCGRG00001005565 Picalm (ENSCGRG00001023935) #20 Eed (ENSCGRG00001002220) #21 Hikeshi (ENSCGRG00001021205) #22 Ccdc81 (ENSCGRG00001021860) #23 Me3 (ENSCGRG00001000087) #25 Prss23 (ENSCGRG00001008698) #26 Fzd4 (ENSCGRG00001017396) #27 Tmem135 (ENSCGRG00001023218) #28 Rab38 (ENSCGRG00001014873) #29 Ctsc (ENSCGRG00001006267) #30 Grm5 (ENSCGRG00001009560) #31 Tyr (ENSCGRG00001019343) #32 Nox4 (ENSCGRG00001000979) #33 Folh1 (ENSCGRG00001000536) #34 ENSCGRG00001012337 ENSCGRG00001014707 ENSCGRG00001011155 ENSCGRG00001000891 Golden Hamster DUPLICATION Golden Hamster MODERN SPECIES 476 ENSMAUG00000015923 #22 Golden Hamster MODERN SPECIES 660 Prcp (ENSMAUG00000018982) Rab30 (ENSMAUG00000008179) Pcf11 (ENSMAUG00000021407) Ankrd42 (ENSMAUG00000015024) Ccdc90b (ENSMAUG00000021266) Dlg2 (ENSMAUG00000012498) #14 Tmem126b (ENSMAUG00000014289) #15 Tmem126a (ENSMAUG00000016002) #16 Crebzf (ENSMAUG00000010774) #17 Ccdc89 (ENSMAUG00000005748) ENSMAUG00000017590 #18 ENSMAUG00000000412 #18 Ccdc83 (ENSMAUG00000008122) #19 Picalm (ENSMAUG00000011448) #20 ENSMAUG00000019033 #21 ENSMAUG00000014854 #22 Ccdc81 (ENSMAUG00000001944) #23 ENSMAUG00000007180 #25 ENSMAUG00000012259 #25 Prss23 (ENSMAUG00000010049) #26 Murinae ANCESTRAL SPECIES ENSGT00940000158099 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00950000183069.b.b.a.b.c.b.a.b.e ENSGT01030000234598.b.a.b.k.a #34 ENSGT01100000263570.A.m.b.b ENSGT01050000244828.c.b.b.b.c.a.a.a.c.b Rat MODERN SPECIES Prcp (ENSRNOG00000010630) Ddias (ENSRNOG00000022521) Rab30 (ENSRNOG00000010224) Pcf11 (ENSRNOG00000009891) Ankrd42 (ENSRNOG00000009664) Ccdc90b (ENSRNOG00000009462) Dlg2 (ENSRNOG00000022635) #14 Tmem126b (ENSRNOG00000022732) #15 Tmem126a (ENSRNOG00000022748) #16 Crebzf (ENSRNOG00000018987) #17 LOC100911776 (ENSRNOG00000048071) Sytl2 (ENSRNOG00000030776) #18 Ccdc83 (ENSRNOG00000052220) #19 Picalm (ENSRNOG00000018322) #20 Eed (ENSRNOG00000017509) #21 Hikeshi (ENSRNOG00000017383) #22 LOC102549852 (ENSRNOG00000022941) Ccdc81 (ENSRNOG00000033733) #23 Me3 (ENSRNOG00000017311) #25 Prss23 (ENSRNOG00000017307) #26 Fzd4 (ENSRNOG00000063590) #27 Tmem135 (ENSRNOG00000016815) #28 Rab38 (ENSRNOG00000016769) #29 Ctsc (ENSRNOG00000016496) #30 Grm5 (ENSRNOG00000016429) #31 Tyr (ENSRNOG00000016421) #32 Nox4 (ENSRNOG00000013925) #33 ENSRNOG00000068544 Vom2r-ps67 (ENSRNOG00000033507) Folh1 (ENSRNOG00000013770) #34 Or14c39 (ENSRNOG00000062805) Mus ANCESTRAL SPECIES ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00900000143322 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a ENSGT01030000234598.b.a.b.k.a #34 ENSGT01100000263570.A.m.b.b.b ENSGT01100000263570.A.m.a.b Shrew mouse MODERN SPECIES Ddias (MGP_PahariEiJ_G0013213) Rab30 (MGP_PahariEiJ_G0013212) Pcf11 (MGP_PahariEiJ_G0013211) Ankrd42 (MGP_PahariEiJ_G0013210) Ccdc90b (MGP_PahariEiJ_G0013209) Dlg2 (MGP_PahariEiJ_G0013208) #14 MGP_PahariEiJ_G0013207 #15 MGP_PahariEiJ_G0013206 #16 Crebzf (MGP_PahariEiJ_G0013205) #17 Ccdc89 (MGP_PahariEiJ_G0013204) MGP_PahariEiJ_G0013203 #18 Ccdc83 (MGP_PahariEiJ_G0013202) #19 Picalm (MGP_PahariEiJ_G0013201) #20 MGP_PahariEiJ_G0013200 Eed (MGP_PahariEiJ_G0013199) #21 Hikeshi (MGP_PahariEiJ_G0013198) #22 Ccdc81 (MGP_PahariEiJ_G0013197) #23 MGP_PahariEiJ_G0013196 #25 MGP_PahariEiJ_G0013195 Prss23 (MGP_PahariEiJ_G0013194) #26 Fzd4 (MGP_PahariEiJ_G0013193) #27 Tmem135 (MGP_PahariEiJ_G0013192) #28 Rab38 (MGP_PahariEiJ_G0013191) #29 Ctsc (MGP_PahariEiJ_G0013190) #30 Grm5 (MGP_PahariEiJ_G0013189) #31 Tyr (MGP_PahariEiJ_G0013188) #32 Nox4 (MGP_PahariEiJ_G0013187) #33 MGP_PahariEiJ_G0013186 MGP_PahariEiJ_G0013185 MGP_PahariEiJ_G0013184 Folh1 (MGP_PahariEiJ_G0013183) #34 Mus_A ANCESTRAL SPECIES 1 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00900000143322 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a ENSGT00950000183069.b.b.a.b.c.b.a.b.e.b ENSGT01030000234598.b.a.b.k.a #34 ENSGT01100000263570.A.m.b.b.b Ryukyu mouse MODERN SPECIES 16 Ddias (MGP_CAROLIEiJ_G0029993) Rab30 (MGP_CAROLIEiJ_G0029992) Pcf11 (MGP_CAROLIEiJ_G0029991) Ankrd42 (MGP_CAROLIEiJ_G0029990) Ccdc90b (MGP_CAROLIEiJ_G0029989) Dlg2 (MGP_CAROLIEiJ_G0029988) #14 Tmem126b (MGP_CAROLIEiJ_G0029987) #15 MGP_CAROLIEiJ_G0029986 #16 Crebzf (MGP_CAROLIEiJ_G0029985) #17 Ccdc89 (MGP_CAROLIEiJ_G0029984) MGP_CAROLIEiJ_G0029983 #18 Ccdc83 (MGP_CAROLIEiJ_G0029982) #19 Picalm (MGP_CAROLIEiJ_G0029981) #20 MGP_CAROLIEiJ_G0029980 Eed (MGP_CAROLIEiJ_G0029979) #21 Hikeshi (MGP_CAROLIEiJ_G0029978) #22 Ccdc81 (MGP_CAROLIEiJ_G0029977) #23 Me3 (MGP_CAROLIEiJ_G0029976) #25 MGP_CAROLIEiJ_G0029975 Prss23 (MGP_CAROLIEiJ_G0029974) #26 Fzd4 (MGP_CAROLIEiJ_G0029973) #27 Tmem135 (MGP_CAROLIEiJ_G0029972) #28 Rab38 (MGP_CAROLIEiJ_G0029971) #29 Ctsc (MGP_CAROLIEiJ_G0029970) #30 Grm5 (MGP_CAROLIEiJ_G0029969) #31 Tyr (MGP_CAROLIEiJ_G0029968) #32 Nox4 (MGP_CAROLIEiJ_G0029967) #33 MGP_CAROLIEiJ_G0029966 Folh1 (MGP_CAROLIEiJ_G0029965) #34 Or14c39 (MGP_CAROLIEiJ_G0029964) Or14a256 (MGP_CAROLIEiJ_G0029963) Mus_B ANCESTRAL SPECIES ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00900000143322 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a.a ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a.b ENSGT00950000183069.b.b.a.b.c.b.a.b.e.b ENSGT01030000234598.b.a.b.k.a #34 Mouse MODERN SPECIES 16 Prcp (ENSMUSG00000061119) Ddias (ENSMUSG00000030641) Rab30 (ENSMUSG00000030643) Pcf11 (ENSMUSG00000041328) Ankrd42 (ENSMUSG00000041343) Ccdc90b (ENSMUSG00000030613) Dlg2 (ENSMUSG00000052572) #14 Tmem126b (ENSMUSG00000030614) #15 Tmem126a (ENSMUSG00000030615) #16 Crebzf (ENSMUSG00000051451) #17 Ccdc89 (ENSMUSG00000044362) Sytl2 (ENSMUSG00000030616) #18 Ccdc83 (ENSMUSG00000030617) #19 Picalm (ENSMUSG00000039361) #20 Eed (ENSMUSG00000030619) #21 Hikeshi (ENSMUSG00000062797) #22 Ccdc81 (ENSMUSG00000039391) #23 Me3 (ENSMUSG00000030621) #25 Prss23 (ENSMUSG00000039405) #26 Fzd4 (ENSMUSG00000049791) #27 Tmem135 (ENSMUSG00000039428) #28 Rab38 (ENSMUSG00000030559) #29 Ctsc (ENSMUSG00000030560) #30 Grm5 (ENSMUSG00000049583) #31 Tyr (ENSMUSG00000004651) #32 Nox4 (ENSMUSG00000030562) #33 Vmn2r79 (ENSMUSG00000090362) Vmn2r78 (ENSMUSG00000091962) Vmn2r77 (ENSMUSG00000090949) Folh1 (ENSMUSG00000001773) #34 Or14c39 (ENSMUSG00000060688) Mus_C ANCESTRAL SPECIES 13 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00900000143322 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a.a ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a.b ENSGT00950000183069.b.b.a.b.c.b.a.b.e.b ENSGT01030000234598.b.a.b.k.a #34 spretus MODERN SPECIES 16 Ddias (MGP_SPRETEiJ_G0031103) Rab30 (MGP_SPRETEiJ_G0031102) Pcf11 (MGP_SPRETEiJ_G0031101) Ankrd42 (MGP_SPRETEiJ_G0031100) Ccdc90b (MGP_SPRETEiJ_G0031099) Dlg2 (MGP_SPRETEiJ_G0031098) #14 Tmem126b (MGP_SPRETEiJ_G0031097) #15 Tmem126a (MGP_SPRETEiJ_G0031096) #16 Crebzf (MGP_SPRETEiJ_G0031095) #17 Ccdc89 (MGP_SPRETEiJ_G0031094) MGP_SPRETEiJ_G0031093 #18 Ccdc83 (MGP_SPRETEiJ_G0031092) #19 Picalm (MGP_SPRETEiJ_G0031091) #20 MGP_SPRETEiJ_G0031090 Eed (MGP_SPRETEiJ_G0031089) #21 Hikeshi (MGP_SPRETEiJ_G0031088) #22 Ccdc81 (MGP_SPRETEiJ_G0031087) #23 Me3 (MGP_SPRETEiJ_G0031086) #25 MGP_SPRETEiJ_G0031085 Prss23 (MGP_SPRETEiJ_G0031084) #26 Fzd4 (MGP_SPRETEiJ_G0031083) #27 Tmem135 (MGP_SPRETEiJ_G0031082) #28 Rab38 (MGP_SPRETEiJ_G0031081) #29 Ctsc (MGP_SPRETEiJ_G0031080) #30 Grm5 (MGP_SPRETEiJ_G0031079) #31 Tyr (MGP_SPRETEiJ_G0031078) #32 Nox4 (MGP_SPRETEiJ_G0031077) #33 MGP_SPRETEiJ_G0031076 MGP_SPRETEiJ_G0031075 Folh1 (MGP_SPRETEiJ_G0031074) #34 MGP_SPRETEiJ_G0031073 Steppe mouse DUPLICATION Steppe mouse MODERN SPECIES 2267 ENSMSIG00000013158 ENSMSIG00000013220 #22 ENSMSIG00000013233 Steppe mouse MODERN SPECIES 3267 Tmem126a (ENSMSIG00000004649) #16 Crebzf (ENSMSIG00000004643) #17 Ccdc89 (ENSMSIG00000004633) ENSMSIG00000004302 #18 Ccdc83 (ENSMSIG00000004142) #19 Picalm (ENSMSIG00000002381) #20 ENSMSIG00000002305 Eed (ENSMSIG00000002163) #21 Hikeshi (ENSMSIG00000002062) #22 Ccdc81 (ENSMSIG00000002033) #23 Me3 (ENSMSIG00000001983) #25 Prss23 (ENSMSIG00000001970) #26 Fzd4 (ENSMSIG00000001959) #27 Tmem135 (ENSMSIG00000001854) #28 Rab38 (ENSMSIG00000001797) #29 Ctsc (ENSMSIG00000001732) #30 Grm5 (ENSMSIG00000001662) #31 Tyr (ENSMSIG00000001626) #32 ENSMSIG00000001617 ENSMSIG00000001407 #33 ENSMSIG00000001350 Vmn2r78 (ENSMSIG00000001291) Vmn2r77 (ENSMSIG00000001225) Folh1 (ENSMSIG00000001146) #34 Upper Galilee mountains blind mole rat DUPLICATION Upper Galilee mountains blind mole rat MODERN SPECIES 887 Ppp1r16a (ENSNGAG00000015151) Gpt (ENSNGAG00000022442) Mfsd3 (ENSNGAG00000021890) Recql4 (ENSNGAG00000004346) Lrrc14 (ENSNGAG00000021854) Lrrc24 (ENSNGAG00000001077) C030006K11Rik (ENSNGAG00000020317) Arhgap39 (ENSNGAG00000012243) ENSNGAG00000022492 ENSNGAG00000019622 Zfp251 (ENSNGAG00000018267) ENSNGAG00000015607 ENSNGAG00000010510 Commd5 (ENSNGAG00000005505) Rpl8 (ENSNGAG00000002558) ENSNGAG00000023606 #22 Zfp647 (ENSNGAG00000024224) ENSNGAG00000018948 ENSNGAG00000016239 1110038F14Rik (ENSNGAG00000015370) Upper Galilee mountains blind mole rat MODERN SPECIES 1254 Prcp (ENSNGAG00000017611) Ddias (ENSNGAG00000019404) Rab30 (ENSNGAG00000018930) Pcf11 (ENSNGAG00000007823) Ankrd42 (ENSNGAG00000001127) Ccdc90b (ENSNGAG00000018955) Dlg2 (ENSNGAG00000013593) #14 Tmem126a (ENSNGAG00000000853) #16 ENSNGAG00000016917 #15 Crebzf (ENSNGAG00000013879) #17 Ccdc89 (ENSNGAG00000017955) ENSNGAG00000007001 #18 Ccdc83 (ENSNGAG00000002487) #19 Picalm (ENSNGAG00000011828) #20 Eed (ENSNGAG00000020336) #21 Hikeshi (ENSNGAG00000017432) #22 Ccdc81 (ENSNGAG00000011335) #23 ENSNGAG00000000347 Me3 (ENSNGAG00000020611) #25 Prss23 (ENSNGAG00000014789) #26 Fzd4 (ENSNGAG00000011833) #27 ENSNGAG00000015588 #28 Rab38 (ENSNGAG00000012189) #29 Ctsc (ENSNGAG00000004920) #30 Grm5 (ENSNGAG00000000178) #31 Tyr (ENSNGAG00000013719) #32 Laurasiatheria ANCESTRAL SPECIES 1 ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00940000155156.a.b ##14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00940000169935 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409 Eulipotyphla ANCESTRAL SPECIES ENSGT00390000004056 #22 Hedgehog MODERN SPECIES 4528 HIKESHI (ENSEEUG00000014778) #22 Common shrew MODERN SPECIES 3480 HIKESHI (ENSSARG00000006945) #22 Laurasiatheria_a ANCESTRAL SPECIES 1 ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00940000155156.a.b ##14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00940000169935 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000163440 Laurasiatheria_b ANCESTRAL SPECIES 1 ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00940000155156.a.b ##14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409 ENSGT00940000160005.A Carnivora ANCESTRAL SPECIES 21 ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00940000155156.a.b ##14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409 ENSGT00940000160005.B Felidae ANCESTRAL SPECIES ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.b #15 ENSGT00520000055616.a.q.b #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409 ENSGT00940000160005.B Panthera ANCESTRAL SPECIES 23 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.b #15 ENSGT00520000055616.a.q.b #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409 ENSGT00940000160005.B Tiger MODERN SPECIES 123 RAB30 (ENSPTIG00000009836) PCF11 (ENSPTIG00000009975) ANKRD42 (ENSPTIG00000010041) CCDC90B (ENSPTIG00000010203) ENSPTIG00000010312 #14 ENSPTIG00000010529 #14 TMEM126B (ENSPTIG00000011015) #15 ENSPTIG00000011055 #16 ENSPTIG00000011085 CCDC89 (ENSPTIG00000009905) ENSPTIG00000011280 #18 CCDC83 (ENSPTIG00000012014) #19 ENSPTIG00000009913 PICALM (ENSPTIG00000012288) #20 EED (ENSPTIG00000012760) #21 HIKESHI (ENSPTIG00000012915) #22 CCDC81 (ENSPTIG00000013106) #23 ME3 (ENSPTIG00000013285) #25 PRSS23 (ENSPTIG00000009955) #26 FZD4 (ENSPTIG00000013786) #27 TMEM135 (ENSPTIG00000013833) #28 RAB38 (ENSPTIG00000014043) #29 CTSC (ENSPTIG00000014202) #30 GRM5 (ENSPTIG00000014395) #31 TYR (ENSPTIG00000014539) #32 NOX4 (ENSPTIG00000015391) #33 FOLH1 (ENSPTIG00000016704) #34 ENSPTIG00000017086 ENSPTIG00000017277 TRIM77 (ENSPTIG00000017304) UBTFL1 (ENSPTIG00000009976) Panthera_a ANCESTRAL SPECIES 24 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.b #15 ENSGT00520000055616.a.q.b #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409 ENSGT00940000160005.B leopard MODERN SPECIES 17 PCF11 (ENSPPRG00000024270) ANKRD42 (ENSPPRG00000024421) CCDC90B (ENSPPRG00000013976) ENSPPRG00000012171 #14 ENSPPRG00000010067 #14 TMEM126B (ENSPPRG00000005529) #15 ENSPPRG00000005013 #16 ENSPPRG00000004597 CCDC89 (ENSPPRG00000016516) ENSPPRG00000004036 #18 CCDC83 (ENSPPRG00000018265) #19 ENSPPRG00000016079 PICALM (ENSPPRG00000015638) #20 ENSPPRG00000015994 EED (ENSPPRG00000012039) #21 HIKESHI (ENSPPRG00000010865) #22 CCDC81 (ENSPPRG00000009583) #23 ME3 (ENSPPRG00000008336) #25 PRSS23 (ENSPPRG00000015765) #26 FZD4 (ENSPPRG00000004892) #27 TMEM135 (ENSPPRG00000004298) #28 RAB38 (ENSPPRG00000002670) #29 CTSC (ENSPPRG00000002465) #30 GRM5 (ENSPPRG00000001606) #31 TYR (ENSPPRG00000001016) #32 NOX4 (ENSPPRG00000000522) #33 FOLH1 (ENSPPRG00000017997) #34 ENSPPRG00000013571 TRIM77 (ENSPPRG00000012936) UBTFL1 (ENSPPRG00000015347) NAALAD2 (ENSPPRG00000012456) #36 lion MODERN SPECIES 10 RAB30 (ENSPLOG00000020748) PCF11 (ENSPLOG00000020679) ANKRD42 (ENSPLOG00000020576) CCDC90B (ENSPLOG00000020533) DLG2 (ENSPLOG00000019919) #14 ENSPLOG00000019612 ENSPLOG00000019583 TMEM126B (ENSPLOG00000019541) #15 ENSPLOG00000019486 #16 CREBZF (ENSPLOG00000019442) #17 CCDC89 (ENSPLOG00000019413) SYTL2 (ENSPLOG00000019183) #18 CCDC83 (ENSPLOG00000019073) #19 PICALM (ENSPLOG00000018802) #20 EED (ENSPLOG00000018287) #21 HIKESHI (ENSPLOG00000018145) #22 CCDC81 (ENSPLOG00000017860) #23 ENSPLOG00000017816 ME3 (ENSPLOG00000017730) #25 ENSPLOG00000017695 PRSS23 (ENSPLOG00000017679) #26 FZD4 (ENSPLOG00000017652) #27 TMEM135 (ENSPLOG00000017505) #28 RAB38 (ENSPLOG00000017440) #29 CTSC (ENSPLOG00000017389) #30 GRM5 (ENSPLOG00000017218) #31 TYR (ENSPLOG00000017151) #32 NOX4 (ENSPLOG00000016100) #33 FOLH1 (ENSPLOG00000015364) #34 ENSPLOG00000015181 ENSPLOG00000014641 Cat MODERN SPECIES 241 PRCP (ENSFCAG00000028082) DDIAS (ENSFCAG00000031353) RAB30 (ENSFCAG00000014416) PCF11 (ENSFCAG00000022938) ANKRD42 (ENSFCAG00000029546) CCDC90B (ENSFCAG00000023013) DLG2 (ENSFCAG00000027392) #14 TMEM126B (ENSFCAG00000042698) #15 ENSFCAG00000027606 #16 CREBZF (ENSFCAG00000042678) #17 CCDC89 (ENSFCAG00000000408) SYTL2 (ENSFCAG00000029903) #18 CCDC83 (ENSFCAG00000030354) #19 PICALM (ENSFCAG00000029123) #20 EED (ENSFCAG00000001593) #21 HIKESHI (ENSFCAG00000031418) #22 CCDC81 (ENSFCAG00000024111) #23 ENSFCAG00000028997 ME3 (ENSFCAG00000011823) #25 FZD4 (ENSFCAG00000033140) #27 TMEM135 (ENSFCAG00000028774) #28 RAB38 (ENSFCAG00000008444) #29 CTSC (ENSFCAG00000008445) #30 GRM5 (ENSFCAG00000035511) #31 TYR (ENSFCAG00000024128) #32 NOX4 (ENSFCAG00000026770) #33 FOLH1 (ENSFCAG00000007740) #34 ENSFCAG00000008521 ENSFCAG00000043585 ENSFCAG00000018518 ENSFCAG00000049822 Caniformia ANCESTRAL SPECIES 17 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174 #37 Canidae ANCESTRAL SPECIES 17 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00390000013440.d ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409 ENSGT00940000160005.B.g Canis_lupus ANCESTRAL SPECIES 21 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00390000013440.d ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00540000070023.c.b.a.a.a.b.a.a ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787.f.a #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409 ENSGT00940000160005.B.g Dog MODERN SPECIES 13 PCF11 (ENSCAFG00845011978) ANKRD42 (ENSCAFG00845011790) CCDC90B (ENSCAFG00845011734) DLG2 (ENSCAFG00845009396) #14 ENSCAFG00845008703 #15 ENSCAFG00845008664 ENSCAFG00845008649 TMEM126A (ENSCAFG00845008622) #16 ENSCAFG00845008580 CCDC89 (ENSCAFG00845008484) SYTL2 (ENSCAFG00845008296) #18 CCDC83 (ENSCAFG00845008116) #19 ENSCAFG00845008086 PICALM (ENSCAFG00845007629) #20 HIKESHI (ENSCAFG00845007205) #21 HIKESHI (ENSCAFG00845006940) #22 CCDC81 (ENSCAFG00845006799) #23 ENSCAFG00845006757 ME3 (ENSCAFG00845006657) #25 ENSCAFG00845006591 PRSS23 (ENSCAFG00845006550) #26 FZD4 (ENSCAFG00845006501) #27 TMEM135 (ENSCAFG00845006352) #28 ENSCAFG00845006234 #29 CTSC (ENSCAFG00845026305) #30 GRM5 (ENSCAFG00845025940) #31 TYR (ENSCAFG00845025889) #32 NOX4 (ENSCAFG00845025676) #33 FOLH1B (ENSCAFG00845025397) #34 ENSCAFG00845025305 ENSCAFG00845025158 Dingo MODERN SPECIES 245 RAB30 (ENSCAFG00020017865) PCF11 (ENSCAFG00020017859) ANKRD42 (ENSCAFG00020017853) CCDC90B (ENSCAFG00020017849) ENSCAFG00020017845 DLG2 (ENSCAFG00020017781) #14 TMEM126B (ENSCAFG00020017765) #15 ENSCAFG00020017763 TMEM126A (ENSCAFG00020017761) #16 CREBZF (ENSCAFG00020017758) #17 CCDC89 (ENSCAFG00020017757) ENSCAFG00020017754 #18 CCDC83 (ENSCAFG00020017748) #19 PICALM (ENSCAFG00020017726) #20 EED (ENSCAFG00020017721) #21 HIKESHI (ENSCAFG00020017719) #22 CCDC81 (ENSCAFG00020017715) #23 ENSCAFG00020017713 ME3 (ENSCAFG00020017304) #25 ENSCAFG00020017269 PRSS23 (ENSCAFG00020017267) #26 FZD4 (ENSCAFG00020017261) #27 TMEM135 (ENSCAFG00020017038) #28 RAB38 (ENSCAFG00020017027) #29 ENSCAFG00020016953 #30 GRM5 (ENSCAFG00020016867) #31 TYR (ENSCAFG00020016835) #32 NOX4 (ENSCAFG00020016814) #33 FOLH1 (ENSCAFG00020016805) #34 ENSCAFG00020016778 TRIM77 (ENSCAFG00020016740) Red fox MODERN SPECIES 109 ENSVVUG00000017510 DLG2 (ENSVVUG00000017516) #14 ENSVVUG00000017560 ENSVVUG00000017562 TMEM126B (ENSVVUG00000017564) #15 ENSVVUG00000017568 TMEM126A (ENSVVUG00000017574) #16 CREBZF (ENSVVUG00000017577) #17 CCDC89 (ENSVVUG00000017579) SYTL2 (ENSVVUG00000017582) #18 ENSVVUG00000017599 CCDC83 (ENSVVUG00000017603) #19 ENSVVUG00000017613 PICALM (ENSVVUG00000017626) #20 EED (ENSVVUG00000017672) #21 HIKESHI (ENSVVUG00000017683) #22 CCDC81 (ENSVVUG00000017688) #23 ME3 (ENSVVUG00000017722) #25 PRSS23 (ENSVVUG00000018688) #26 FZD4 (ENSVVUG00000018692) #27 TMEM135 (ENSVVUG00000018698) #28 RAB38 (ENSVVUG00000018733) #29 CTSC (ENSVVUG00000018738) #30 GRM5 (ENSVVUG00000018755) #31 TYR (ENSVVUG00000018778) #32 NOX4 (ENSVVUG00000018823) #33 Caniformia_b ANCESTRAL SPECIES 3 ENSGT00910000147508 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174 #37 ENSGT00940000154981 Mustelinae ANCESTRAL SPECIES 25 ENSGT00910000147508 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174 #37 ENSGT00940000154981 Ferret MODERN SPECIES 259 TMEM126B (ENSMPUG00000009961) #15 TMEM126A (ENSMPUG00000009968) #16 CREBZF (ENSMPUG00000009974) #17 CCDC89 (ENSMPUG00000018686) ENSMPUG00000009977 #18 ENSMPUG00000009986 CCDC83 (ENSMPUG00000009994) #19 PICALM (ENSMPUG00000010037) #20 ENSMPUG00000010054 EED (ENSMPUG00000010062) #21 HIKESHI (ENSMPUG00000010148) #22 CCDC81 (ENSMPUG00000010154) #23 ENSMPUG00000018687 ME3 (ENSMPUG00000010166) #25 PRSS23 (ENSMPUG00000018688) #26 FZD4 (ENSMPUG00000010353) #27 ENSMPUG00000010356 TMEM135 (ENSMPUG00000010358) #28 RAB38 (ENSMPUG00000010366) #29 CTSC (ENSMPUG00000010370) #30 GRM5 (ENSMPUG00000010375) #31 TYR (ENSMPUG00000010381) #32 NOX4 (ENSMPUG00000010385) #33 FOLH1 (ENSMPUG00000010390) #34 NAALAD2 (ENSMPUG00000010401) #36 CHORDC1 (ENSMPUG00000010548) #37 American mink MODERN SPECIES 6 DDIAS (ENSNVIG00000001340) RAB30 (ENSNVIG00000001367) PCF11 (ENSNVIG00000001382) ANKRD42 (ENSNVIG00000001421) CCDC90B (ENSNVIG00000001464) DLG2 (ENSNVIG00000001534) #14 TMEM126B (ENSNVIG00000002727) #15 T126A (ENSNVIG00000002771) #16 CREBZF (ENSNVIG00000002789) #17 CCDC89 (ENSNVIG00000002820) SYTL2 (ENSNVIG00000002830) #18 CCDC83 (ENSNVIG00000003123) #19 PICALM (ENSNVIG00000003187) #20 ENSNVIG00000003391 EED (ENSNVIG00000003411) #21 CK073 (ENSNVIG00000003496) #22 CCDC81 (ENSNVIG00000003531) #23 ENSNVIG00000003607 ME3 (ENSNVIG00000003626) #25 ENSNVIG00000003666 PRS23 (ENSNVIG00000003676) #26 FZD4 (ENSNVIG00000003680) #27 TM135 (ENSNVIG00000003728) #28 ENSNVIG00000003901 E7ENT2 (ENSNVIG00000003909) #29 CTSC (ENSNVIG00000003934) #30 GRM5 (ENSNVIG00000004087) #31 ENSNVIG00000004099 ENSNVIG00000004112 #31 TYR (ENSNVIG00000004130) #32 NOX4 (ENSNVIG00000004160) #33 Ursidae ANCESTRAL SPECIES 15 ENSGT00940000158099 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00950000186113 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b.m #36 ENSGT00940000154174 #37 Giant Panda MODERN SPECIES 18 PRCP (ENSAMEG00000005213) DDIAS (ENSAMEG00000026663) RAB30 (ENSAMEG00000005231) PCF11 (ENSAMEG00000005241) ANKRD42 (ENSAMEG00000005277) CCDC90B (ENSAMEG00000005343) DLG2 (ENSAMEG00000008686) #14 TMEM126B (ENSAMEG00000008700) #15 TMEM126A (ENSAMEG00000008703) #16 ENSAMEG00000026222 CCDC89 (ENSAMEG00000019526) SYTL2 (ENSAMEG00000008713) #18 CCDC83 (ENSAMEG00000008762) #19 PICALM (ENSAMEG00000008778) #20 EED (ENSAMEG00000008806) #21 HIKESHI (ENSAMEG00000008810) #22 CCDC81 (ENSAMEG00000006169) #23 ENSAMEG00000024714 ME3 (ENSAMEG00000006202) #25 ENSAMEG00000023464 FZD4 (ENSAMEG00000025739) #27 TMEM135 (ENSAMEG00000006301) #28 RAB38 (ENSAMEG00000015103) #29 CTSC (ENSAMEG00000015113) #30 GRM5 (ENSAMEG00000024209) #31 TYR (ENSAMEG00000005958) #32 NOX4 (ENSAMEG00000005207) #33 ENSAMEG00000005259 #34 ENSAMEG00000007477 #36 ENSAMEG00000007577 #37 ENSAMEG00000028153 #37 Ursus ANCESTRAL SPECIES 187 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00950000186113 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 Polar bear MODERN SPECIES 261 TMEM126B (ENSUMAG00000023888) #15 TMEM126A (ENSUMAG00000023889) #16 CCDC89 (ENSUMAG00000023891) ENSUMAG00000023892 #18 CCDC83 (ENSUMAG00000023895) #19 PICALM (ENSUMAG00000023896) #20 EED (ENSUMAG00000023898) #21 HIKESHI (ENSUMAG00000023906) #22 CCDC81 (ENSUMAG00000023908) #23 ENSUMAG00000023909 ENSUMAG00000023910 #25 ENSUMAG00000023980 #25 ENSUMAG00000024049 PRSS23 (ENSUMAG00000024052) #26 FZD4 (ENSUMAG00000024054) #27 TMEM135 (ENSUMAG00000024056) #28 RAB38 (ENSUMAG00000024064) #29 CTSC (ENSUMAG00000024065) #30 GRM5 (ENSUMAG00000024067) #31 TYR (ENSUMAG00000024078) #32 NOX4 (ENSUMAG00000024090) #33 FOLH1 (ENSUMAG00000024123) #34 American black bear MODERN SPECIES 5610 EED (ENSUAMG00000026103) #21 HIKESHI (ENSUAMG00000026104) #22 Laurasiatheria_c ANCESTRAL SPECIES 9 ENSGT00940000158099 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409 ENSGT00940000163858 Equus ANCESTRAL SPECIES 15 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00860000135923 ENSGT00550000074698.k.b.b.jc ENSGT00940000163242.b.a ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00900000143351 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00940000168933 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409 Donkey MODERN SPECIES 12 PCF11 (ENSEASG00005012749) CCDC90B (ENSEASG00005012746) ANKRD42 (ENSEASG00005012744) ENSEASG00005024778 ENSEASG00005024412 ENSEASG00005012741 DLG2 (ENSEASG00005012722) #14 TMEM126B (ENSEASG00005024050) #15 TMEM126A (ENSEASG00005023675) #16 CREBZF (ENSEASG00005030453) #17 CCDC89 (ENSEASG00005012696) SYTL2 (ENSEASG00005012693) #18 CCDC83 (ENSEASG00005012690) #19 PICALM (ENSEASG00005012685) #20 EED (ENSEASG00005012683) #21 HIKESHI (ENSEASG00005012681) #22 CCDC81 (ENSEASG00005012679) #23 ENSEASG00005038186 ME3 (ENSEASG00005012671) #25 PRSS23 (ENSEASG00005035692) #26 FZD4 (ENSEASG00005012666) #27 ENSEASG00005012664 TMEM135 (ENSEASG00005012663) #28 RAB38 (ENSEASG00005025963) #29 CTSC (ENSEASG00005027690) #30 ENSEASG00005032755 #30 ENSEASG00005012648 GRM5 (ENSEASG00005012645) #31 TYR (ENSEASG00005012641) #32 ENSEASG00005012636 #33 ENSEASG00005012629 #34 Horse DUPLICATION Horse MODERN SPECIES 28 ANKRD42 (ENSECAG00000018421) ENSECAG00000044671 ENSECAG00000052899 ENSECAG00000006065 ENSECAG00000011596 DLG2 (ENSECAG00000013426) #14 TMEM126B (ENSECAG00000010871) #15 TMEM126A (ENSECAG00000010580) #16 CREBZF (ENSECAG00000051993) #17 CCDC89 (ENSECAG00000005713) SYTL2 (ENSECAG00000006803) #18 CCDC83 (ENSECAG00000023925) #19 PICALM (ENSECAG00000019264) #20 EED (ENSECAG00000016295) #21 ENSECAG00000059054 #22 HIKESHI (ENSECAG00000049412) #22 CCDC81 (ENSECAG00000015265) #23 ENSECAG00000005619 ENSECAG00000027950 ME3 (ENSECAG00000007798) #25 PRSS23 (ENSECAG00000005563) #26 FZD4 (ENSECAG00000030065) #27 ENSECAG00000059232 ENSECAG00000051350 ENSECAG00000003430 ENSECAG00000044202 TMEM135 (ENSECAG00000007648) #28 RAB38 (ENSECAG00000001775) #29 CTSC (ENSECAG00000020881) #30 ENSECAG00000020876 GRM5 (ENSECAG00000018967) #31 Horse MODERN SPECIES 28 CCDC90B (ENSECAG00000013853) ANKRD42 (ENSECAG00000018421) ENSECAG00000044671 ENSECAG00000052899 ENSECAG00000006065 ENSECAG00000011596 DLG2 (ENSECAG00000013426) #14 TMEM126B (ENSECAG00000010871) #15 TMEM126A (ENSECAG00000010580) #16 CREBZF (ENSECAG00000051993) #17 CCDC89 (ENSECAG00000005713) SYTL2 (ENSECAG00000006803) #18 CCDC83 (ENSECAG00000023925) #19 PICALM (ENSECAG00000019264) #20 EED (ENSECAG00000016295) #21 ENSECAG00000059054 #22 HIKESHI (ENSECAG00000049412) #22 CCDC81 (ENSECAG00000015265) #23 ENSECAG00000005619 ENSECAG00000027950 ME3 (ENSECAG00000007798) #25 PRSS23 (ENSECAG00000005563) #26 FZD4 (ENSECAG00000030065) #27 ENSECAG00000059232 ENSECAG00000051350 ENSECAG00000003430 ENSECAG00000044202 TMEM135 (ENSECAG00000007648) #28 RAB38 (ENSECAG00000001775) #29 CTSC (ENSECAG00000020881) #30 ENSECAG00000020876 Chiroptera ANCESTRAL SPECIES 5 ENSGT00940000158099 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b.cb ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409 ENSGT00940000160005.A ENSGT00940000163440 Megabat MODERN SPECIES 2698 EED (ENSPVAG00000007530) #21 HIKESHI (ENSPVAG00000007532) #22 CCDC81 (ENSPVAG00000007534) #23 ME3 (ENSPVAG00000007536) #25 Microchiroptera ANCESTRAL SPECIES 2 ENSGT00940000158099 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b.cb ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409 ENSGT00940000163858 ENSGT00940000163440 Microbat MODERN SPECIES 1043 ENSMLUG00000008469 TMEM126B (ENSMLUG00000005891) #15 TMEM126A (ENSMLUG00000005896) #16 CCDC89 (ENSMLUG00000005906) ENSMLUG00000005910 #18 CCDC83 (ENSMLUG00000005923) #19 PICALM (ENSMLUG00000005936) #20 ENSMLUG00000026711 EED (ENSMLUG00000014688) #21 HIKESHI (ENSMLUG00000016260) #22 CCDC81 (ENSMLUG00000001952) #23 ME3 (ENSMLUG00000001964) #25 PRSS23 (ENSMLUG00000001979) #26 FZD4 (ENSMLUG00000009453) #27 ENSMLUG00000029442 #28 ENSMLUG00000008814 #28 RAB38 (ENSMLUG00000010537) #29 CTSC (ENSMLUG00000010550) #30 GRM5 (ENSMLUG00000016200) #31 ENSMLUG00000024818 TYR (ENSMLUG00000016206) #32 NOX4 (ENSMLUG00000016907) #33 ENSMLUG00000025886 FOLH1 (ENSMLUG00000008308) #34 ENSMLUG00000023565 Greater horseshoe bat DUPLICATION Greater horseshoe bat MODERN SPECIES 2 RAB30 (ENSRFEG00010010335) PCF11 (ENSRFEG00010010412) ENSRFEG00010010518 ENSRFEG00010010648 DLG2 (ENSRFEG00010011148) #14 ENSRFEG00010012064 TMEM126B (ENSRFEG00010012127) #15 TMEM126A (ENSRFEG00010012220) #16 CREBZF (ENSRFEG00010012287) #17 CCDC89 (ENSRFEG00010012330) SYTL2 (ENSRFEG00010012365) #18 ENSRFEG00010012812 #19 PICALM (ENSRFEG00010012989) #20 EED (ENSRFEG00010013379) #21 ENSRFEG00010013602 HIKESHI (ENSRFEG00010013658) #22 ENSRFEG00010013854 CCDC81 (ENSRFEG00010013935) #23 ME3 (ENSRFEG00010014578) #25 ENSRFEG00010014821 PRSS23 (ENSRFEG00010014842) #26 FZD4 (ENSRFEG00010014860) #27 ENSRFEG00010014879 TMEM135 (ENSRFEG00010014945) #28 RAB38 (ENSRFEG00010015300) #29 CTSC (ENSRFEG00010015349) #30 GRM5 (ENSRFEG00010015430) #31 TYR (ENSRFEG00010015497) #32 NOX4 (ENSRFEG00010015643) #33 FOLH1 (ENSRFEG00010017343) #34 ENSRFEG00010017811 Greater horseshoe bat MODERN SPECIES 13 MAFG (ENSRFEG00010006018) ENSRFEG00010006039 PYCR1 (ENSRFEG00010006097) MYADML2 (ENSRFEG00010006161) NOTUM (ENSRFEG00010006190) ASPSCR1 (ENSRFEG00010006266) ENSRFEG00010006356 LRRC45 (ENSRFEG00010006400) RAC3 (ENSRFEG00010006465) DCXR (ENSRFEG00010006515) RFNG (ENSRFEG00010006544) GPS1 (ENSRFEG00010006597) DUS1L (ENSRFEG00010006724) FASN (ENSRFEG00010006788) CCDC57 (ENSRFEG00010006897) ENSRFEG00010006971 #22 SLC16A3 (ENSRFEG00010007003) CSNK1D (ENSRFEG00010007075) ENSRFEG00010007334 ENSRFEG00010007356 UTS2R (ENSRFEG00010007415) OGFOD3 (ENSRFEG00010007444) HEXD (ENSRFEG00010007486) CYBC1 (ENSRFEG00010007520) NARF (ENSRFEG00010007613) FOXK2 (ENSRFEG00010007836) RAB40B (ENSRFEG00010007943) WDR45B (ENSRFEG00010008010) FN3KRP (ENSRFEG00010008071) FN3K (ENSRFEG00010008116) TBCD (ENSRFEG00010008186) Artiodactyla ANCESTRAL SPECIES 1 ENSGT00990000214054 ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00940000169935 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000163440 Artiodactyla_a ANCESTRAL SPECIES 1 ENSGT00990000214054 ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00940000169935 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000163440 Artiodactyla_b ANCESTRAL SPECIES 1 ENSGT00990000214054 ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00940000169935 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000163440 Cetacea ANCESTRAL SPECIES 4 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00940000169935 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000163440.g ENSGT00940000162409 Odontoceti ANCESTRAL SPECIES 4 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000010283.k.b ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00940000169935 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409.i Odontoceti_a ANCESTRAL SPECIES 4 ENSGT00940000158099 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453.k.a ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a.m.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000010283.k.b ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00940000169935 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409.i Odontoceti_b ANCESTRAL SPECIES 4 ENSGT00940000158099 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453.k.a ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a.m.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000010283.k.b ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00940000169935 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409.i Monodontidae ANCESTRAL SPECIES 2 ENSGT00940000158099 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453.k.a ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a.m.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409.i ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174 #37 Narwhal MODERN SPECIES 314 PRCP (ENSMMNG00015017470) DDIAS (ENSMMNG00015017356) RAB30 (ENSMMNG00015017300) PCF11 (ENSMMNG00015017250) ANKRD42 (ENSMMNG00015017078) CCDC90B (ENSMMNG00015017033) DLG2 (ENSMMNG00015015492) #14 TMEM126B (ENSMMNG00015015104) #15 ENSMMNG00015015089 #16 CREBZF (ENSMMNG00015015075) #17 CCDC89 (ENSMMNG00015015061) ENSMMNG00015015000 #18 CCDC83 (ENSMMNG00015014970) #19 PICALM (ENSMMNG00015014880) #20 EED (ENSMMNG00015014804) #21 HIKESHI (ENSMMNG00015014769) #22 CCDC81 (ENSMMNG00015014732) #23 ENSMMNG00015014700 ME3 (ENSMMNG00015014679) #25 PRSS23 (ENSMMNG00015014667) #26 FZD4 (ENSMMNG00015014656) #27 TMEM135 (ENSMMNG00015014607) #28 RAB38 (ENSMMNG00015014573) #29 CTSC (ENSMMNG00015014542) #30 GRM5 (ENSMMNG00015014498) #31 TYR (ENSMMNG00015014453) #32 NOX4 (ENSMMNG00015021151) #33 NAALAD2 (ENSMMNG00015020956) #36 CHORDC1 (ENSMMNG00015020880) #37 FAT3 (ENSMMNG00015020732) MTNR1B (ENSMMNG00015020672) Beluga whale MODERN SPECIES 2 RAB30 (ENSDLEG00000002770) PCF11 (ENSDLEG00000002774) ANKRD42 (ENSDLEG00000002791) ENSDLEG00000002798 ENSDLEG00000002802 DLG2 (ENSDLEG00000002821) #14 ENSDLEG00000002911 TMEM126B (ENSDLEG00000002918) #15 ENSDLEG00000002926 #16 CREBZF (ENSDLEG00000002931) #17 CCDC89 (ENSDLEG00000002938) ENSDLEG00000002956 #18 CCDC83 (ENSDLEG00000002970) #19 PICALM (ENSDLEG00000002993) #20 EED (ENSDLEG00000003117) #21 HIKESHI (ENSDLEG00000003141) #22 CCDC81 (ENSDLEG00000003163) #23 ME3 (ENSDLEG00000003198) #25 PRSS23 (ENSDLEG00000003208) #26 FZD4 (ENSDLEG00000003217) #27 ENSDLEG00000003221 TMEM135 (ENSDLEG00000003226) #28 RAB38 (ENSDLEG00000003249) #29 CTSC (ENSDLEG00000003257) #30 GRM5 (ENSDLEG00000003265) #31 TYR (ENSDLEG00000003283) #32 NOX4 (ENSDLEG00000003303) #33 FOLH1 (ENSDLEG00000003393) #34 ENSDLEG00000003772 Vaquita MODERN SPECIES 19 PRCP (ENSPSNG00000021508) DDIAS (ENSPSNG00000021476) RAB30 (ENSPSNG00000021453) PCF11 (ENSPSNG00000021405) ANKRD42 (ENSPSNG00000021372) ENSPSNG00000021348 DLG2 (ENSPSNG00000019221) #14 TMEM126B (ENSPSNG00000018567) #15 ENSPSNG00000018507 #16 CREBZF (ENSPSNG00000018478) #17 CCDC89 (ENSPSNG00000018454) ENSPSNG00000018339 #18 CCDC83 (ENSPSNG00000018191) #19 PICALM (ENSPSNG00000017970) #20 EED (ENSPSNG00000017804) #21 HIKESHI (ENSPSNG00000017703) #22 CCDC81 (ENSPSNG00000017515) #23 ENSPSNG00000017457 ME3 (ENSPSNG00000017348) #25 PRSS23 (ENSPSNG00000017307) #26 FZD4 (ENSPSNG00000017272) #27 ENSPSNG00000017225 TMEM135 (ENSPSNG00000017021) #28 RAB38 (ENSPSNG00000016956) #29 CTSC (ENSPSNG00000016884) #30 GRM5 (ENSPSNG00000016691) #31 TYR (ENSPSNG00000016603) #32 NOX4 (ENSPSNG00000016374) #33 ENSPSNG00000016293 ENSPSNG00000015989 ENSPSNG00000015913 Dolphin MODERN SPECIES 1901 EED (ENSTTRG00000012266) #21 HIKESHI (ENSTTRG00000012267) #22 CCDC81 (ENSTTRG00000012268) #23 ME3 (ENSTTRG00000012269) #25 PRSS23 (ENSTTRG00000012270) #26 Sperm whale MODERN SPECIES 7 DDIAS (ENSPCTG00005010514) RAB30 (ENSPCTG00005010467) PCF11 (ENSPCTG00005010384) ANKRD42 (ENSPCTG00005010304) CCDC90B (ENSPCTG00005010220) DLG2 (ENSPCTG00005008716) #14 ENSPCTG00005008523 ENSPCTG00005008505 TMEM126B (ENSPCTG00005008472) #15 TMEM126A (ENSPCTG00005008442) #16 CCDC89 (ENSPCTG00005008392) SYTL2 (ENSPCTG00005008215) #18 CCDC83 (ENSPCTG00005008113) #19 PICALM (ENSPCTG00005007605) #20 EED (ENSPCTG00005007433) #21 HIKESHI (ENSPCTG00005007380) #22 CCDC81 (ENSPCTG00005007322) #23 ENSPCTG00005007298 ME3 (ENSPCTG00005007233) #25 PRSS23 (ENSPCTG00005007213) #26 FZD4 (ENSPCTG00005007199) #27 ENSPCTG00005007172 TMEM135 (ENSPCTG00005007056) #28 ENSPCTG00005007024 ENSPCTG00005007012 RAB38 (ENSPCTG00005007000) #29 CTSC (ENSPCTG00005006945) #30 GRM5 (ENSPCTG00005006847) #31 TYR (ENSPCTG00005006804) #32 NOX4 (ENSPCTG00005006689) #33 FOLH1B (ENSPCTG00005006376) #34 Blue whale MODERN SPECIES 19 DDIAS (ENSBMSG00010005051) RAB30 (ENSBMSG00010005043) PCF11 (ENSBMSG00010005034) ANKRD42 (ENSBMSG00010005024) CCDC90B (ENSBMSG00010005013) ENSBMSG00010005009 DLG2 (ENSBMSG00010002552) #14 TMEM126B (ENSBMSG00010001999) #15 TMEM126A (ENSBMSG00010001985) #16 CREBZF (ENSBMSG00010001973) #17 CCDC89 (ENSBMSG00010001966) SYTL2 (ENSBMSG00010001898) #18 CCDC83 (ENSBMSG00010001838) #19 PICALM (ENSBMSG00010001786) #20 EED (ENSBMSG00010001736) #21 HIKESHI (ENSBMSG00010001721) #22 CCDC81 (ENSBMSG00010001642) #23 ME3 (ENSBMSG00010001610) #25 PRSS23 (ENSBMSG00010001597) #26 FZD4 (ENSBMSG00010001591) #27 ENSBMSG00010001482 #28 RAB38 (ENSBMSG00010001436) #29 CTSC (ENSBMSG00010001420) #30 GRM5 (ENSBMSG00010001371) #31 TYR (ENSBMSG00010001331) #32 NOX4 (ENSBMSG00010000676) #33 FOLH1 (ENSBMSG00010000460) #34 ENSBMSG00010000378 ENSBMSG00010000367 ENSBMSG00010000341 ENSBMSG00010000316 Pecora ANCESTRAL SPECIES 13 ENSGT00990000214054 ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409.k.b ENSGT00940000163440 Yarkand deer MODERN SPECIES 11 RAB30 (ENSCHYG00000003380) PCF11 (ENSCHYG00000003359) ANKRD42 (ENSCHYG00000003347) ENSCHYG00000003340 ENSCHYG00000003307 ENSCHYG00000002869 #14 TMEM126B (ENSCHYG00000002757) #15 ENSCHYG00000002743 #16 CREBZF (ENSCHYG00000002736) #17 CCDC89 (ENSCHYG00000002726) ENSCHYG00000002641 #18 ENSCHYG00000002613 ENSCHYG00000002584 #19 PICALM (ENSCHYG00000001855) #20 EED (ENSCHYG00000001672) #21 HIKESHI (ENSCHYG00000001630) #22 CCDC81 (ENSCHYG00000001578) #23 ENSCHYG00000001557 ENSCHYG00000001541 ENSCHYG00000001536 ME3 (ENSCHYG00000001420) #25 PRSS23 (ENSCHYG00000001379) #26 FZD4 (ENSCHYG00000001366) #27 TMEM135 (ENSCHYG00000001269) #28 RAB38 (ENSCHYG00000001226) #29 CTSC (ENSCHYG00000001169) #30 ENSCHYG00000001133 GRM5 (ENSCHYG00000000979) #31 TYR (ENSCHYG00000000943) #32 NOX4 (ENSCHYG00000000830) #33 FOLH1 (ENSCHYG00000000623) #34 Percora_a ANCESTRAL SPECIES 16 ENSGT00990000214054 ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409.k.b ENSGT00940000162409.k.a.b Bovidae ANCESTRAL SPECIES 16 ENSGT00990000214054 ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00960000192014 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409.k.b Caprinae ANCESTRAL SPECIES 29 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00900000143390 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00960000192014 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000163858.e.a.a Rambouillet Sheep MODERN SPECIES 13 CCDC90B (ENSOARG00020024361) ENSOARG00020024238 ENSOARG00020024223 ENSOARG00020024191 #19 ENSOARG00020024175 DLG2 (ENSOARG00020016002) #14 TMEM126B (ENSOARG00020015676) #15 TMEM126A (ENSOARG00020015625) #16 CREBZF (ENSOARG00020015588) #17 CCDC89 (ENSOARG00020015557) SYTL2 (ENSOARG00020014519) #18 ENSOARG00020014438 ENSOARG00020014330 #19 PICALM (ENSOARG00020013638) #20 EED (ENSOARG00020012861) #21 HIKESHI (ENSOARG00020012706) #22 ENSOARG00020018700 ME3 (ENSOARG00020018621) #25 ENSOARG00020018554 PRSS23 (ENSOARG00020018547) #26 FZD4 (ENSOARG00020018518) #27 TMEM135 (ENSOARG00020018240) #28 ENSOARG00020018155 RAB38 (ENSOARG00020018125) #29 CTSC (ENSOARG00020017978) #30 ENSOARG00020017848 #31 ENSOARG00020017819 TYR (ENSOARG00020017770) #32 NOX4 (ENSOARG00020017262) #33 ENSOARG00020017199 ENSOARG00020017116 Goat MODERN SPECIES 21 PCF11 (ENSCHIG00000020954) ANKRD42 (ENSCHIG00000018399) CCDC90B (ENSCHIG00000023161) DLG2 (ENSCHIG00000024691) #14 ENSCHIG00000009761 ENSCHIG00000021811 TMEM126B (ENSCHIG00000013101) #15 ENSCHIG00000026099 #16 CREBZF (ENSCHIG00000005919) #17 CCDC89 (ENSCHIG00000004366) ENSCHIG00000019092 #18 CCDC83 (ENSCHIG00000013675) #19 ENSCHIG00000022640 PICALM (ENSCHIG00000015634) #20 EED (ENSCHIG00000015509) #21 HIKESHI (ENSCHIG00000023660) #22 CCDC81 (ENSCHIG00000016243) #23 ENSCHIG00000002265 ME3 (ENSCHIG00000014285) #25 PRSS23 (ENSCHIG00000010056) #26 FZD4 (ENSCHIG00000026211) #27 ENSCHIG00000019838 #28 ENSCHIG00000013504 #28 RAB38 (ENSCHIG00000024276) #29 CTSC (ENSCHIG00000013901) #30 GRM5 (ENSCHIG00000015813) #31 ENSCHIG00000023687 #31 TYR (ENSCHIG00000004892) #32 NOX4 (ENSCHIG00000021611) #33 FOLH1 (ENSCHIG00000013522) #34 ENSCHIG00000023324 Bovinae ANCESTRAL SPECIES 27 ENSGT00440000034259.b ENSGT00990000214054 ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00960000192014 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409.k.b Bos ANCESTRAL SPECIES 11 ENSGT00440000034259.b ENSGT00990000214054 ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.a.b ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409.k.b Bos_a ANCESTRAL SPECIES 66 ENSGT00440000034259.b ENSGT00990000214054 ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.a.b ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409.k.b Domestic yak MODERN SPECIES 21 DLG2 (ENSBGRG00000022447) #14 ENSBGRG00000023913 ENSBGRG00000023931 ENSBGRG00000023962 ENSBGRG00000023993 ENSBGRG00000024005 ENSBGRG00000024013 TMEM126B (ENSBGRG00000024037) #15 ENSBGRG00000024097 #16 CREBZF (ENSBGRG00000024210) #17 CCDC89 (ENSBGRG00000024223) ENSBGRG00000024253 #18 CCDC83 (ENSBGRG00000024540) #19 PICALM (ENSBGRG00000024679) #20 EED (ENSBGRG00000025126) #21 HIKESHI (ENSBGRG00000025330) #22 CCDC81 (ENSBGRG00000025357) #23 ME3 (ENSBGRG00000025466) #25 ENSBGRG00000025555 ENSBGRG00000025562 PRSS23 (ENSBGRG00000025570) #26 FZD4 (ENSBGRG00000025585) #27 TMEM135 (ENSBGRG00000025613) #28 RAB38 (ENSBGRG00000025707) #29 CTSC (ENSBGRG00000025732) #30 GRM5 (ENSBGRG00000025754) #31 ENSBGRG00000025770 #31 ENSBGRG00000025774 #32 ENSBGRG00000013459 #32 NOX4 (ENSBGRG00000013584) #33 FOLH1 (ENSBGRG00000013892) #34 Wild yak MODERN SPECIES 1529 CCDC83 (ENSBMUG00000019367) #19 PICALM (ENSBMUG00000019285) #20 EED (ENSBMUG00000019111) #21 HIKESHI (ENSBMUG00000019057) #22 CCDC81 (ENSBMUG00000019021) #23 ENSBMUG00000018940 ME3 (ENSBMUG00000018926) #25 FZD4 (ENSBMUG00000018882) #27 Bos_b ANCESTRAL SPECIES 10 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01000000214875 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.a.b ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000162409.k.b Cow MODERN SPECIES 21 RAB30 (ENSBTAG00000002417) PCF11 (ENSBTAG00000015277) ANKRD42 (ENSBTAG00000001391) CCDC90B (ENSBTAG00000007479) ENSBTAG00000048705 DLG2 (ENSBTAG00000027868) #14 ENSBTAG00000053418 TMEM126B (ENSBTAG00000020596) #15 TMEM126A (ENSBTAG00000000451) #16 CREBZF (ENSBTAG00000000455) #17 CCDC89 (ENSBTAG00000000457) SYTL2 (ENSBTAG00000000460) #18 CCDC83 (ENSBTAG00000011132) #19 PICALM (ENSBTAG00000001657) #20 EED (ENSBTAG00000007847) #21 HIKESHI (ENSBTAG00000019995) #22 CCDC81 (ENSBTAG00000020009) #23 ENSBTAG00000046374 ME3 (ENSBTAG00000000246) #25 PRSS23 (ENSBTAG00000015177) #26 FZD4 (ENSBTAG00000040128) #27 TMEM135 (ENSBTAG00000005482) #28 ENSBTAG00000050697 ENSBTAG00000049723 RAB38 (ENSBTAG00000015793) #29 CTSC (ENSBTAG00000011100) #30 ENSBTAG00000034845 GRM5 (ENSBTAG00000048061) #31 TYR (ENSBTAG00000011813) #32 NOX4 (ENSBTAG00000018540) #33 FOLH1B (ENSBTAG00000007397) #34 Hybrid Bos Indicus MODERN SPECIES 21 ANKRD42 (ENSBIXG00005019460) CCDC90B (ENSBIXG00005003146) DLG2 (ENSBIXG00005000048) #14 ENSBIXG00005016035 ENSBIXG00005016027 ENSBIXG00005007506 ENSBIXG00005015966 TMEM126B (ENSBIXG00005006137) #15 TMEM126A (ENSBIXG00005015931) #16 CREBZF (ENSBIXG00005015909) #17 CCDC89 (ENSBIXG00005002504) ENSBIXG00005015861 #18 CCDC83 (ENSBIXG00005015679) #19 PICALM (ENSBIXG00005015588) #20 EED (ENSBIXG00005015358) #21 HIKESHI (ENSBIXG00005015272) #22 CCDC81 (ENSBIXG00005015221) #23 ENSBIXG00005015176 ME3 (ENSBIXG00005015127) #25 ENSBIXG00005006228 PRSS23 (ENSBIXG00005015048) #26 FZD4 (ENSBIXG00005002201) #27 TMEM135 (ENSBIXG00005007500) #28 ENSBIXG00005014836 ENSBIXG00005006132 ENSBIXG00005014818 RAB38 (ENSBIXG00005014802) #29 CTSC (ENSBIXG00005005707) #30 ENSBIXG00005014734 #31 ENSBIXG00005002053 ENSBIXG00005014663 #31 American bison MODERN SPECIES 3238 RAB30 (ENSBBBG00000019557) PCF11 (ENSBBBG00000007044) ANKRD42 (ENSBBBG00000019636) CCDC90B (ENSBBBG00000019665) DLG2 (ENSBBBG00000007047) #14 ENSBBBG00000008368 ENSBBBG00000008951 ENSBBBG00000020046 #15 TMEM126A (ENSBBBG00000005096) #16 CREBZF (ENSBBBG00000005090) #17 CCDC89 (ENSBBBG00000005086) ENSBBBG00000020192 #18 CCDC83 (ENSBBBG00000005453) #19 PICALM (ENSBBBG00000006910) #20 EED (ENSBBBG00000000678) #21 HIKESHI (ENSBBBG00000000640) #22 CCDC81 (ENSBBBG00000000571) #23 ENSBBBG00000000561 ME3 (ENSBBBG00000000531) #25 PRSS23 (ENSBBBG00000000524) #26 FZD4 (ENSBBBG00000005521) #27 Siberian musk deer MODERN SPECIES 334 DLG2 (ENSMMSG00000012131) #14 TMEM126B (ENSMMSG00000011791) #15 TMEM126A (ENSMMSG00000011765) #16 CREBZF (ENSMMSG00000011747) #17 CCDC89 (ENSMMSG00000011737) ENSMMSG00000011390 #18 CCDC83 (ENSMMSG00000011291) #19 PICALM (ENSMMSG00000010915) #20 EED (ENSMMSG00000010761) #21 HIKESHI (ENSMMSG00000010677) #22 CCDC81 (ENSMMSG00000010200) #23 ENSMMSG00000010151 ENSMMSG00000010131 ME3 (ENSMMSG00000010096) #25 PRSS23 (ENSMMSG00000010081) #26 FZD4 (ENSMMSG00000010064) #27 TMEM135 (ENSMMSG00000009825) #28 RAB38 (ENSMMSG00000009772) #29 CTSC (ENSMMSG00000009733) #30 GRM5 (ENSMMSG00000009613) #31 TYR (ENSMMSG00000009581) #32 NOX4 (ENSMMSG00000009089) #33 FOLH1 (ENSMMSG00000008725) #34 ENSMMSG00000008663 ENSMMSG00000008585 Camelidae ANCESTRAL SPECIES 32 ENSGT01030000234618.D ENSGT01030000234566.e.b.b.a ENSGT00940000158099 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000163440 ENSGT00940000160005.B ENSGT00940000163858 ENSGT01030000234598.b.a.b.k.b #36 Alpaca MODERN SPECIES 1954 TMEM126B (ENSVPAG00000001715) #15 TMEM126A (ENSVPAG00000001716) #16 SYTL2 (ENSVPAG00000001719) #18 CCDC83 (ENSVPAG00000001720) #19 PICALM (ENSVPAG00000001721) #20 EED (ENSVPAG00000001723) #21 HIKESHI (ENSVPAG00000001725) #22 CCDC81 (ENSVPAG00000001728) #23 Arabian camel MODERN SPECIES 1 RAB30 (ENSCDRG00005000271) PCF11 (ENSCDRG00005000302) ANKRD42 (ENSCDRG00005000336) CCDC90B (ENSCDRG00005000363) ENSCDRG00005000387 DLG2 (ENSCDRG00005000832) #14 TMEM126B (ENSCDRG00005005932) #15 ENSCDRG00005005974 #16 CREBZF (ENSCDRG00005006000) #17 ENSCDRG00005006034 CCDC89 (ENSCDRG00005006041) SYTL2 (ENSCDRG00005006073) #18 CCDC83 (ENSCDRG00005006299) #19 PICALM (ENSCDRG00005006440) #20 EED (ENSCDRG00005007103) #21 HIKESHI (ENSCDRG00005007926) #22 CCDC81 (ENSCDRG00005008087) #23 ENSCDRG00005008636 ME3 (ENSCDRG00005008675) #25 PRSS23 (ENSCDRG00005008761) #26 FZD4 (ENSCDRG00005008783) #27 TMEM135 (ENSCDRG00005008846) #28 RAB38 (ENSCDRG00005009241) #29 CTSC (ENSCDRG00005009321) #30 GRM5 (ENSCDRG00005009561) #31 TYR (ENSCDRG00005009674) #32 NOX4 (ENSCDRG00005009765) #33 FOLH1 (ENSCDRG00005010235) #34 ENSCDRG00005010410 ENSCDRG00005010499 ENSCDRG00005011110 Suina ANCESTRAL SPECIES 5 ENSGT00940000158099 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00940000164723 ENSGT00950000183134.c.a.a #25 ENSGT00900000143351 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000160005.A ENSGT00940000162409 Pig MODERN SPECIES 17 RAB30 (ENSSSCG00000014900) PCF11 (ENSSSCG00000014901) ANKRD42 (ENSSSCG00000014902) CCDC90B (ENSSSCG00000014903) DLG2 (ENSSSCG00000014904) #14 TMEM126B (ENSSSCG00000014905) #15 TMEM126A (ENSSSCG00000025187) #16 CREBZF (ENSSSCG00000014907) #17 CCDC89 (ENSSSCG00000062997) SYTL2 (ENSSSCG00000014909) #18 ENSSSCG00000059638 ENSSSCG00000014911 CCDC83 (ENSSSCG00000014912) #19 PICALM (ENSSSCG00000014913) #20 EED (ENSSSCG00000014915) #21 HIKESHI (ENSSSCG00000021210) #22 CCDC81 (ENSSSCG00000014917) #23 ENSSSCG00000047749 ENSSSCG00000014918 ME3 (ENSSSCG00000014919) #25 PRSS23 (ENSSSCG00000014921) #26 FZD4 (ENSSSCG00000014920) #27 TMEM135 (ENSSSCG00000035619) #28 RAB38 (ENSSSCG00000033878) #29 CTSC (ENSSSCG00000014924) #30 GRM5 (ENSSSCG00000029865) #31 ENSSSCG00000052702 TYR (ENSSSCG00000026409) #32 NOX4 (ENSSSCG00000014927) #33 FOLH1B (ENSSSCG00000027093) #34 ENSSSCG00000028810 Chacoan peccary MODERN SPECIES 31 DDIAS (ENSCWAG00000000327) PRCP (ENSCWAG00000000285) RAB30 (ENSCWAG00000000258) PCF11 (ENSCWAG00000000220) ANKRD42 (ENSCWAG00000000170) CCDC90B (ENSCWAG00000015330) DLG2 (ENSCWAG00000005957) #14 TMEM126B (ENSCWAG00000005630) #15 TMEM126A (ENSCWAG00000005609) #16 CREBZF (ENSCWAG00000005594) #17 CCDC89 (ENSCWAG00000005581) SYTL2 (ENSCWAG00000005345) #18 CCDC83 (ENSCWAG00000005253) #19 PICALM (ENSCWAG00000005113) #20 EED (ENSCWAG00000004971) #21 HIKESHI (ENSCWAG00000004933) #22 CCDC81 (ENSCWAG00000004701) #23 ENSCWAG00000004652 ME3 (ENSCWAG00000004613) #25 ENSCWAG00000004584 PRSS23 (ENSCWAG00000004567) #26 FZD4 (ENSCWAG00000004556) #27 Atlantogenata ANCESTRAL SPECIES 35 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00940000155156.a.b ##14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000160005.B ENSGT00940000160005.A ENSGT00940000163858 ENSGT01030000234598.b.a.b.k.b #36 Xenarthra ANCESTRAL SPECIES 1436 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 Sloth MODERN SPECIES 3998 HIKESHI (ENSCHOG00000000327) #22 Armadillo MODERN SPECIES 1234 ENSDNOG00000001629 #21 ENSDNOG00000047705 HIKESHI (ENSDNOG00000036375) #22 CCDC81 (ENSDNOG00000044311) #23 ME3 (ENSDNOG00000008517) #25 Afrotheria ANCESTRAL SPECIES 41 ENSGT01030000234566.e.b.b.a ENSGT00940000158099 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00940000160005.B ENSGT00940000160005.A ENSGT00940000163858 Tenrec MODERN SPECIES 4381 ENSETEG00000016058 #22 Afrotheria_a ANCESTRAL SPECIES 120 ENSGT01030000234566.e.b.b.a ENSGT00940000158099 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 Elephant MODERN SPECIES 486 PRCP (ENSLAFG00000008730) DDIAS (ENSLAFG00000008583) RAB30 (ENSLAFG00000010711) PCF11 (ENSLAFG00000000623) ANKRD42 (ENSLAFG00000021802) ENSLAFG00000015417 ENSLAFG00000010836 #14 ENSLAFG00000030347 #14 TMEM126A (ENSLAFG00000022847) #16 CREBZF (ENSLAFG00000014649) #17 CCDC89 (ENSLAFG00000017161) ENSLAFG00000023353 #18 ENSLAFG00000000753 #19 PICALM (ENSLAFG00000000754) #20 EED (ENSLAFG00000002676) #21 HIKESHI (ENSLAFG00000009125) #22 CCDC81 (ENSLAFG00000002978) #23 ME3 (ENSLAFG00000006856) #25 PRSS23 (ENSLAFG00000004876) #26 ENSLAFG00000031157 FZD4 (ENSLAFG00000007383) #27 TMEM135 (ENSLAFG00000000851) #28 RAB38 (ENSLAFG00000032135) #29 CTSC (ENSLAFG00000000890) #30 ENSLAFG00000032092 #31 ENSLAFG00000004534 #31 TYR (ENSLAFG00000016209) #32 NOX4 (ENSLAFG00000016618) #33 FOLH1 (ENSLAFG00000010953) #34 ENSLAFG00000023298 ENSLAFG00000011083 Hyrax MODERN SPECIES 3659 HIKESHI (ENSPCAG00000008159) #22 CCDC81 (ENSPCAG00000008192) #23 Marsupialia ANCESTRAL SPECIES 28 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b.z #14 ENSGT00940000155156.b.y #14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 Marsupialia_b ANCESTRAL SPECIES 20 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453.ab ENSGT00940000155156.b.z #14 ENSGT00940000155156.b.y #14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00950000183097.a.a.b ENSGT00940000173214 ENSGT00940000173288 ENSGT00940000160585 Tasmanian devil MODERN SPECIES 2 ANKRD42 (ENSSHAG00000017684) CCDC90B (ENSSHAG00000001413) ENSSHAG00000032256 DLG2 (ENSSHAG00000025318) #14 ENSSHAG00000028016 ENSSHAG00000025462 ENSSHAG00000029253 ENSSHAG00000025603 #15 TMEM126A (ENSSHAG00000027315) #16 CREBZF (ENSSHAG00000026899) #17 CCDC89 (ENSSHAG00000004068) ENSSHAG00000000874 #18 CCDC83 (ENSSHAG00000006672) #19 PICALM (ENSSHAG00000004629) #20 EED (ENSSHAG00000013554) #21 ENSSHAG00000013345 #22 CCDC81 (ENSSHAG00000012907) #23 ME3 (ENSSHAG00000011265) #25 PRSS23 (ENSSHAG00000010219) #26 FZD4 (ENSSHAG00000009486) #27 TMEM135 (ENSSHAG00000005028) #28 RAB38 (ENSSHAG00000001883) #29 CTSC (ENSSHAG00000021775) #30 GRM5 (ENSSHAG00000005876) #31 TYR (ENSSHAG00000003407) #32 ENSSHAG00000004938 #33 ENSSHAG00000002531 #34 ENSSHAG00000002301 ENSSHAG00000031322 ENSSHAG00000013328 ENSSHAG00000030777 Diprotodontia ANCESTRAL SPECIES 24 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453.ab ENSGT00940000155156.b.z #14 ENSGT00940000155156.b.y #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00950000183097.a.a.b ENSGT00940000173214 ENSGT00940000173288 ENSGT00940000160585 Diprotodontia_a ANCESTRAL SPECIES 25 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453.ab ENSGT00940000155156.b.z #14 ENSGT00940000155156.b.y #14 ENSGT00520000055616.b #15 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT00950000183097.a.a.b ENSGT00940000173214 ENSGT00940000173288 ENSGT00940000160585 koala MODERN SPECIES 53 RAB30 (ENSPCIG00000027547) PCF11 (ENSPCIG00000027546) ANKRD42 (ENSPCIG00000027545) CCDC90B (ENSPCIG00000027544) ENSPCIG00000032781 ENSPCIG00000028928 #14 ENSPCIG00000028927 #14 ENSPCIG00000018835 #15 ENSPCIG00000018836 #16 CREBZF (ENSPCIG00000018837) #17 CCDC89 (ENSPCIG00000018839) ENSPCIG00000018840 #18 CCDC83 (ENSPCIG00000018849) #19 PICALM (ENSPCIG00000018862) #20 EED (ENSPCIG00000018888) #21 HIKESHI (ENSPCIG00000018890) #22 CCDC81 (ENSPCIG00000018892) #23 ENSPCIG00000018899 #25 ENSPCIG00000036562 #25 ENSPCIG00000018908 PRSS23 (ENSPCIG00000018910) #26 FZD4 (ENSPCIG00000018913) #27 TMEM135 (ENSPCIG00000027278) #28 RAB38 (ENSPCIG00000002044) #29 CTSC (ENSPCIG00000024375) #30 GRM5 (ENSPCIG00000024373) #31 ENSPCIG00000024370 #31 TYR (ENSPCIG00000024368) #32 NOX4 (ENSPCIG00000011154) #33 FOLH1 (ENSPCIG00000018760) #34 ENSPCIG00000015183 Common wonbat MODERN SPECIES 342 RAB30 (ENSVURG00010006644) PCF11 (ENSVURG00010006617) ANKRD42 (ENSVURG00010006605) ENSVURG00010006592 ENSVURG00010006557 ENSVURG00010006518 #14 ENSVURG00010006473 #14 ENSVURG00010006456 #15 TMEM126A (ENSVURG00010006451) #16 CREBZF (ENSVURG00010006446) #17 CCDC89 (ENSVURG00010006440) ENSVURG00010006353 #18 PICALM (ENSVURG00010006226) #20 EED (ENSVURG00010006129) #21 ENSVURG00010006114 ENSVURG00010006106 #22 CCDC81 (ENSVURG00010006061) #23 ME3 (ENSVURG00010006020) #25 PRSS23 (ENSVURG00010005981) #26 FZD4 (ENSVURG00010005964) #27 TMEM135 (ENSVURG00010005930) #28 ENSVURG00010005908 #29 CTSC (ENSVURG00010005899) #30 TYR (ENSVURG00010005865) #32 NOX4 (ENSVURG00010005832) #33 ENSVURG00010000640 #34 LCP1 (ENSVURG00010023528) ENSVURG00010023527 RUBCNL (ENSVURG00010023522) LRCH1 (ENSVURG00010023509) ENSVURG00010023498 Opossum MODERN SPECIES 3 RAB30 (ENSMODG00000042391) PCF11 (ENSMODG00000004498) ANKRD42 (ENSMODG00000004477) CCDC90B (ENSMODG00000004456) ENSMODG00000004436 #14 ENSMODG00000006441 #14 ENSMODG00000045316 ENSMODG00000037216 TMEM126A (ENSMODG00000004384) #16 CREBZF (ENSMODG00000004377) #17 ENSMODG00000004359 #18 ENSMODG00000048166 #18 CCDC83 (ENSMODG00000004311) #19 PICALM (ENSMODG00000004297) #20 EED (ENSMODG00000004253) #21 HIKESHI (ENSMODG00000039483) #22 CCDC81 (ENSMODG00000004183) #23 ME3 (ENSMODG00000004158) #25 PRSS23 (ENSMODG00000041673) #26 FZD4 (ENSMODG00000004102) #27 ENSMODG00000024072 TMEM135 (ENSMODG00000004087) #28 ENSMODG00000035809 ENSMODG00000024094 ENSMODG00000028786 LCP1 (ENSMODG00000011413) ENSMODG00000011358 ENSMODG00000029107 LRCH1 (ENSMODG00000011348) ESD (ENSMODG00000011290) HTR2A (ENSMODG00000011274) Platypus MODERN SPECIES 12 TENM4 (ENSOANG00000050564) ENSOANG00000036733 PRCP (ENSOANG00000011106) RAB30 (ENSOANG00000014498) PCF11 (ENSOANG00000006552) ANKRD42 (ENSOANG00000008014) CCDC90B (ENSOANG00000045474) DLG2 (ENSOANG00000038643) #14 ENSOANG00000013210 #15 ENSOANG00000013209 #16 CCDC89 (ENSOANG00000013208) ENSOANG00000013207 #18 ENSOANG00000013206 #19 PICALM (ENSOANG00000013205) #20 EED (ENSOANG00000008884) #21 HIKESHI (ENSOANG00000038507) #22 CCDC81 (ENSOANG00000008880) #23 ME3 (ENSOANG00000008877) #25 PRSS23 (ENSOANG00000008876) #26 FZD4 (ENSOANG00000008874) #27 TMEM135 (ENSOANG00000008873) #28 RAB38 (ENSOANG00000008872) #29 CTSC (ENSOANG00000043869) #30 GRM5 (ENSOANG00000008870) #31 TYR (ENSOANG00000008868) #32 NOX4 (ENSOANG00000008867) #33 FOLH1 (ENSOANG00000004606) #34 NAALAD2 (ENSOANG00000004605) #36 CHORDC1 (ENSOANG00000043552) #37 FAT3 (ENSOANG00000011705) ENSOANG00000042265 Sauria ANCESTRAL SPECIES 2 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00940000155156.a.b ##14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00950000185226 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174 #37 ENSGT00940000154981 Lepidosauria ANCESTRAL SPECIES 17 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00940000155156.a.b ##14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00950000185226 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174 #37 ENSGT00940000154981 Episquamata ANCESTRAL SPECIES 2 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00940000155156.a.b ##14 ENSGT01000000214875 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174 #37 ENSGT00940000154981 ENSGT00940000162341 Toxicofera ANCESTRAL SPECIES 9 ENSGT00940000166008 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00940000155156.a.b ##14 ENSGT01000000214875 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174 #37 ENSGT00940000154981 ENSGT00940000162341 Elapidae ANCESTRAL SPECIES 10 ENSGT00940000165087 ENSGT00940000166008 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01000000214875 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787.m #30 ENSGT00940000155787.n #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b.i #36 ENSGT00940000154174 #37 ENSGT00940000154981 Indian cobra MODERN SPECIES 4 PRCP (ENSNNAG00000007309) RAB30 (ENSNNAG00000007200) PCF11 (ENSNNAG00000007053) ANKRD42 (ENSNNAG00000006940) CCDC90B (ENSNNAG00000006911) ENSNNAG00000006872 ##14 ENSNNAG00000006844 ##14 ENSNNAG00000006824 ENSNNAG00000006814 TMEM126A (ENSNNAG00000006796) #16 CCDC89 (ENSNNAG00000006775) ENSNNAG00000006760 #18 PICALM (ENSNNAG00000006381) #20 ENSNNAG00000006310 #21 ENSNNAG00000006304 #21 HIKESHI (ENSNNAG00000006290) #22 CCDC81 (ENSNNAG00000006203) #23 ENSNNAG00000006162 #25 ENSNNAG00000006142 #25 PRSS23 (ENSNNAG00000006135) #26 FZD4 (ENSNNAG00000006121) #27 ENSNNAG00000006106 #28 ENSNNAG00000006047 #28 ENSNNAG00000006022 #28 ENSNNAG00000006003 ENSNNAG00000005993 #30 ENSNNAG00000005985 #30 GRM5 (ENSNNAG00000005247) #31 TYR (ENSNNAG00000005074) #32 NOX4 (ENSNNAG00000005040) #33 FOLH1 (ENSNNAG00000004877) #34 Elapidae_a ANCESTRAL SPECIES 41 ENSGT00940000165087 ENSGT00940000166008 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a.k ENSGT00940000155453 ENSGT00940000155156.b.vb #14 ENSGT01000000214875 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a.b #25 ENSGT00950000183134.c.a.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787.m #30 ENSGT00940000155787.n #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b.i #36 ENSGT00940000154174 #37 Acanthophiinae ANCESTRAL SPECIES 42 ENSGT00940000158099 ENSGT00940000165087 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a.k ENSGT00940000155453 ENSGT00940000155156.b.vb #14 ENSGT01000000214875 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a.b #25 ENSGT00950000183134.c.a.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787.m #30 ENSGT00940000155787.n #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b.i #36 ENSGT00940000154174 #37 Mainland tiger snake DUPLICATION Mainland tiger snake MODERN SPECIES 135 ENSNSUG00000018618 FAM181B (ENSNSUG00000018617) RAB30 (ENSNSUG00000018615) PCF11 (ENSNSUG00000018614) ENSNSUG00000018613 ENSNSUG00000018612 CCDC90B (ENSNSUG00000018611) DLG2 (ENSNSUG00000018608) #14 ENSNSUG00000018605 TMEM126A (ENSNSUG00000018604) #16 CREBZF (ENSNSUG00000018603) #17 CCDC89 (ENSNSUG00000018602) ENSNSUG00000018601 #18 PICALM (ENSNSUG00000018598) #20 EED (ENSNSUG00000018585) #21 ENSNSUG00000018580 #22 CCDC81 (ENSNSUG00000018575) #23 ME3 (ENSNSUG00000018568) #25 PRSS23 (ENSNSUG00000018564) #26 FZD4 (ENSNSUG00000018563) #27 TMEM135 (ENSNSUG00000018562) #28 Mainland tiger snake MODERN SPECIES 126 ENSNSUG00000008521 SGMS1 (ENSNSUG00000008528) A1CF (ENSNSUG00000008529) ENSNSUG00000008530 ENSNSUG00000008531 ENSNSUG00000008532 DKK1 (ENSNSUG00000008533) ENSNSUG00000008534 #22 PCDH15 (ENSNSUG00000008535) ENSNSUG00000008684 Eastern brown snake MODERN SPECIES 33 PRCP (ENSPTXG00000003190) ENSPTXG00000003563 RAB30 (ENSPTXG00000003564) PCF11 (ENSPTXG00000003566) ENSPTXG00000003568 CCDC90B (ENSPTXG00000003570) DLG2 (ENSPTXG00000003776) #14 ENSPTXG00000003779 TMEM126A (ENSPTXG00000003780) #16 CREBZF (ENSPTXG00000003782) #17 CCDC89 (ENSPTXG00000000099) SYTL2 (ENSPTXG00000000140) #18 CCDC83 (ENSPTXG00000000218) #19 PICALM (ENSPTXG00000000248) #20 EED (ENSPTXG00000000288) #21 HIKESHI (ENSPTXG00000000303) #22 CCDC81 (ENSPTXG00000000350) #23 ME3 (ENSPTXG00000001185) #25 PRSS23 (ENSPTXG00000001186) #26 FZD4 (ENSPTXG00000001190) #27 TMEM135 (ENSPTXG00000001194) #28 RAB38 (ENSPTXG00000001201) #29 CTSC (ENSPTXG00000001207) #30 GRM5 (ENSPTXG00000001252) #31 TYR (ENSPTXG00000002601) #32 NOX4 (ENSPTXG00000002912) #33 FOLH1 (ENSPTXG00000002913) #34 NAALAD2 (ENSPTXG00000003043) #36 CHORDC1 (ENSPTXG00000004173) #37 FAT3 (ENSPTXG00000004176) MTNR1B (ENSPTXG00000004180) Blue-lipped sea krait MODERN SPECIES 4642 EED (ENSLLTG00000008862) #21 HIKESHI (ENSLLTG00000008968) #22 CCDC81 (ENSLLTG00000008980) #23 ENSLLTG00000009021 #25 Lizard MODERN SPECIES 2 RAB30 (ENSACAG00000001098) ANKRD42 (ENSACAG00000001390) CCDC90B (ENSACAG00000001469) ENSACAG00000041050 ENSACAG00000001627 #14 ENSACAG00000039241 ##14 TMEM126A (ENSACAG00000001894) #16 CREBZF (ENSACAG00000044560) #17 CCDC89 (ENSACAG00000027099) ENSACAG00000001917 #18 CCDC83 (ENSACAG00000002001) #19 PICALM (ENSACAG00000002037) #20 ENSACAG00000028726 EED (ENSACAG00000002420) #21 CCDC81 (ENSACAG00000002561) #23 HIKESHI (ENSACAG00000039755) #22 ME3 (ENSACAG00000002632) #25 ENSACAG00000043722 PRSS23 (ENSACAG00000002734) #26 FZD4 (ENSACAG00000002739) #27 TMEM135 (ENSACAG00000034771) #28 CTSC (ENSACAG00000015158) #30 GRM5 (ENSACAG00000015032) #31 TYR (ENSACAG00000014963) #32 ENSACAG00000044205 NOX4 (ENSACAG00000014875) #33 ENSACAG00000014644 #34 ENSACAG00000037169 NAALAD2 (ENSACAG00000014471) #36 CHORDC1 (ENSACAG00000014370) #37 ENSACAG00000024003 Laterata ANCESTRAL SPECIES 3 ENSGT00940000158099 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT00940000155156.a.b ##14 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174 #37 ENSGT00940000154981 ENSGT00940000162341 Common wall lizard MODERN SPECIES 12 PRCP (ENSPMRG00000001884) ENSPMRG00000001893 RAB30 (ENSPMRG00000001899) PCF11 (ENSPMRG00000001908) ANKRD42 (ENSPMRG00000001939) CCDC90B (ENSPMRG00000001968) ENSPMRG00000002057 #14 ENSPMRG00000002191 ENSPMRG00000002194 ##14 TMEM126A (ENSPMRG00000002199) #16 CCDC89 (ENSPMRG00000002202) ENSPMRG00000002209 #18 CCDC83 (ENSPMRG00000002226) #19 PICALM (ENSPMRG00000002250) #20 EED (ENSPMRG00000002299) #21 HIKESHI (ENSPMRG00000002304) #22 CCDC81 (ENSPMRG00000002312) #23 ME3 (ENSPMRG00000002329) #25 PRSS23 (ENSPMRG00000002350) #26 FZD4 (ENSPMRG00000002357) #27 TMEM135 (ENSPMRG00000002367) #28 RAB38 (ENSPMRG00000002382) #29 CTSC (ENSPMRG00000002387) #30 GRM5 (ENSPMRG00000002393) #31 TYR (ENSPMRG00000002408) #32 NOX4 (ENSPMRG00000002424) #33 FOLH1 (ENSPMRG00000002456) #34 CHORDC1 (ENSPMRG00000002476) #37 ENSPMRG00000002487 ENSPMRG00000002494 ENSPMRG00000002498 Argentine black and white tegu MODERN SPECIES 24 ENSSMRG00000007581 RAB30 (ENSSMRG00000007583) PCF11 (ENSSMRG00000007588) ANKRD42 (ENSSMRG00000007597) CCDC90B (ENSSMRG00000007607) ENSSMRG00000007618 ENSSMRG00000007646 #14 ENSSMRG00000009413 ##14 TMEM126A (ENSSMRG00000009417) #16 CREBZF (ENSSMRG00000009418) #17 CCDC89 (ENSSMRG00000009419) ENSSMRG00000009420 #18 CCDC83 (ENSSMRG00000009455) #19 PICALM (ENSSMRG00000009456) #20 EED (ENSSMRG00000009469) #21 HIKESHI (ENSSMRG00000009470) #22 CCDC81 (ENSSMRG00000009482) #23 ME3 (ENSSMRG00000009483) #25 ENSSMRG00000009486 PRSS23 (ENSSMRG00000009512) #26 FZD4 (ENSSMRG00000009513) #27 TMEM135 (ENSSMRG00000009520) #28 ENSSMRG00000009534 RAB38 (ENSSMRG00000009551) #29 CTSC (ENSSMRG00000009552) #30 GRM5 (ENSSMRG00000009569) #31 TYR (ENSSMRG00000009675) #32 NOX4 (ENSSMRG00000009686) #33 FOLH1 (ENSSMRG00000009691) #34 NAALAD2 (ENSSMRG00000009705) #36 CHORDC1 (ENSSMRG00000009707) #37 tuatara MODERN SPECIES 1945 ENSSPUG00000012759 #14 ENSSPUG00000012740 #14 ENSSPUG00000012730 TMEM126A (ENSSPUG00000012722) #16 CCDC89 (ENSSPUG00000012713) ENSSPUG00000012663 #18 PICALM (ENSSPUG00000012595) #20 EED (ENSSPUG00000012553) #21 HIKESHI (ENSSPUG00000012540) #22 CCDC81 (ENSSPUG00000012453) #23 ME3 (ENSSPUG00000012403) #25 PRSS23 (ENSSPUG00000012392) #26 ENSSPUG00000012370 #28 ENSSPUG00000012350 #28 ENSSPUG00000012342 #28 ENSSPUG00000012321 Archelosauria ANCESTRAL SPECIES ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00940000155156.a.b ##14 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00950000185226 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174 #37 ENSGT00940000154981 Cryptodira ANCESTRAL SPECIES ENSGT00940000165087 ENSGT00940000166008 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01030000234954 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00950000185226 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174 #37 ENSGT00940000154981 Testudinoidea ANCESTRAL SPECIES 1 ENSGT00940000158099 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01030000234954 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00950000185226 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174.a #37 ENSGT00940000154981 Testudinidae ANCESTRAL SPECIES ENSGT00940000158099 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01030000234954 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00960000190865 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00950000185226 ENSGT00940000169935 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 Goode s thornscrub tortoise DUPLICATION Goode s thornscrub tortoise MODERN SPECIES PRCP (ENSGEVG00005001811) DDIAS (ENSGEVG00005001827) RAB30 (ENSGEVG00005001843) PCF11 (ENSGEVG00005001855) ENSGEVG00005001874 ENSGEVG00005001886 CCDC90B (ENSGEVG00005001904) DLG2 (ENSGEVG00005001935) #14 ENSGEVG00005002025 TMEM126A (ENSGEVG00005002036) #16 CREBZF (ENSGEVG00005002049) #17 CCDC89 (ENSGEVG00005002061) SYTL2 (ENSGEVG00005002100) #18 PICALM (ENSGEVG00005002184) #20 EED (ENSGEVG00005002273) #21 ENSGEVG00005002287 #22 CCDC81 (ENSGEVG00005002301) #23 ME3 (ENSGEVG00005002332) #25 ENSGEVG00005002358 ENSGEVG00005002369 PRSS23 (ENSGEVG00005002374) #26 FZD4 (ENSGEVG00005002383) #27 TMEM135 (ENSGEVG00005002398) #28 RAB38 (ENSGEVG00005002424) #29 CTSC (ENSGEVG00005002445) #30 GRM5 (ENSGEVG00005002494) #31 TYR (ENSGEVG00005002619) #32 ENSGEVG00005002630 NOX4 (ENSGEVG00005002640) #33 ENSGEVG00005002656 ENSGEVG00005002661 Goode s thornscrub tortoise MODERN SPECIES 19 SPATA5 (ENSGEVG00005012635) NUDT6 (ENSGEVG00005013732) FGF2 (ENSGEVG00005013752) ENSGEVG00005014094 IL21 (ENSGEVG00005014222) ADAD1 (ENSGEVG00005014263) BLTP1 (ENSGEVG00005014528) TRPC3 (ENSGEVG00005015627) BBS7 (ENSGEVG00005015692) ENSGEVG00005015999 CCNA2 (ENSGEVG00005016027) EXOSC9 (ENSGEVG00005016149) ANXA5 (ENSGEVG00005016203) QRFPR (ENSGEVG00005016259) ENSGEVG00005016441 ENSGEVG00005016470 #22 NDNF (ENSGEVG00005016490) PRDM5 (ENSGEVG00005016679) MAD2L1 (ENSGEVG00005017277) RPL7L1 (ENSGEVG00005017295) PDE5A (ENSGEVG00005017370) FABP2 (ENSGEVG00005017699) ENSGEVG00005017718 USP53 (ENSGEVG00005017738) MYOZ2 (ENSGEVG00005017774) SEC24D (ENSGEVG00005018104) METTL14 (ENSGEVG00005018566) PRSS12 (ENSGEVG00005018592) NDST3 (ENSGEVG00005018685) ENSGEVG00005018731 NDST4 (ENSGEVG00005018749) Abingdon island giant tortoise MODERN SPECIES 2453 ENSCABG00000019849 GCLC (ENSCABG00000019845) ELOVL5 (ENSCABG00000019838) GCM1 (ENSCABG00000019835) FBXO9 (ENSCABG00000019830) CILK1 (ENSCABG00000019810) ENSCABG00000019808 ENSCABG00000019687 ENSCABG00000019612 EED (ENSCABG00000019569) #21 HIKESHI (ENSCABG00000019563) #22 CCDC81 (ENSCABG00000019555) #23 ENSCABG00000019551 #25 ENSCABG00000019550 #25 ENSCABG00000019549 PRSS23 (ENSCABG00000019546) #26 Emydidae ANCESTRAL SPECIES 19 ENSGT00390000014932 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01030000234954 ENSGT00940000155156.a.b ##14 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787.o #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00950000185226 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174.a #37 ENSGT00940000154981 Three-toed box turtle MODERN SPECIES 41 RAB30 (ENSTMTG00000016291) ENSTMTG00000016303 PCF11 (ENSTMTG00000016313) ENSTMTG00000016349 ENSTMTG00000016360 CCDC90B (ENSTMTG00000016374) ENSTMTG00000016399 #14 ENSTMTG00000016416 #14 ENSTMTG00000016448 TMEM126A (ENSTMTG00000016454) #16 CREBZF (ENSTMTG00000016468) #17 CCDC89 (ENSTMTG00000016486) ENSTMTG00000016506 #18 PICALM (ENSTMTG00000016582) #20 ENSTMTG00000016675 #21 HIKESHI (ENSTMTG00000016701) #22 ME3 (ENSTMTG00000016711) #25 PRSS23 (ENSTMTG00000016824) #26 FZD4 (ENSTMTG00000016832) #27 ENSTMTG00000016839 #28 ENSTMTG00000016850 #28 RAB38 (ENSTMTG00000016878) #29 ENSTMTG00000016889 #30 GRM5 (ENSTMTG00000016932) #31 TYR (ENSTMTG00000017343) #32 NOX4 (ENSTMTG00000017371) #33 ENSTMTG00000017415 FOLH1 (ENSTMTG00000017450) #34 NAALAD2 (ENSTMTG00000018096) #36 CHORDC1 (ENSTMTG00000020258) #37 FAT3 (ENSTMTG00000020266) painted turtle MODERN SPECIES 753 DDIAS (ENSCPBG00000006875) RAB30 (ENSCPBG00000006855) PCF11 (ENSCPBG00000006842) ANKRD42 (ENSCPBG00000006830) CCDC90B (ENSCPBG00000006821) ENSCPBG00000006811 ENSCPBG00000006766 #14 ENSCPBG00000006719 ##14 TMEM126A (ENSCPBG00000006706) #16 CREBZF (ENSCPBG00000006697) #17 CCDC89 (ENSCPBG00000006691) ENSCPBG00000006665 #18 CCDC83 (ENSCPBG00000006650) #19 PICALM (ENSCPBG00000006596) #20 EED (ENSCPBG00000006558) #21 HIKESHI (ENSCPBG00000006540) #22 CCDC81 (ENSCPBG00000006529) #23 ME3 (ENSCPBG00000006522) #25 PRSS23 (ENSCPBG00000006510) #26 FZD4 (ENSCPBG00000006503) #27 TMEM135 (ENSCPBG00000006491) #28 Chinese turtle MODERN SPECIES 706 TMEM126A (ENSPSIG00000006667) #16 CCDC89 (ENSPSIG00000001567) ENSPSIG00000006701 #18 CCDC83 (ENSPSIG00000007052) #19 PICALM (ENSPSIG00000009433) #20 EED (ENSPSIG00000010993) #21 HIKESHI (ENSPSIG00000011852) #22 CCDC81 (ENSPSIG00000012206) #23 ME3 (ENSPSIG00000012232) #25 PRSS23 (ENSPSIG00000013760) #26 FZD4 (ENSPSIG00000013806) #27 TMEM135 (ENSPSIG00000013965) #28 ENSPSIG00000014919 RAB38 (ENSPSIG00000015574) #29 CTSC (ENSPSIG00000015613) #30 TYR (ENSPSIG00000016986) #32 NOX4 (ENSPSIG00000017588) #33 FOLH1 (ENSPSIG00000017747) #34 NAALAD2 (ENSPSIG00000017958) #36 CHORDC1 (ENSPSIG00000006884) #37 ENSPSIG00000001573 Archosauria ANCESTRAL SPECIES 2 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00940000155156.a.b ##14 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336 #32 ENSGT00940000159621 #33 ENSGT00950000185226 ENSGT01030000234598.b.a.b.k.a #34 ENSGT01030000234598.b.a.b.k.b #36 ENSGT00940000154174 #37 ENSGT00940000154981 ENSGT00940000162341 Aves ANCESTRAL SPECIES 33 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01000000214875 ENSGT01030000234954 ENSGT00940000155156.a.b ##14 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00390000016046 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT01100000263477.D.c ENSGT01030000234566.e.b.b.a ENSGT00950000183127.b.h.a.b ENSGT01030000234618.D ENSGT00940000157792 ENSGT00940000160942 #7 ENSGT00390000005673 ENSGT00940000160906 #8 ENSGT00940000153733.A #9 ENSGT00390000010352 #10 ENSGT00500000044890.a.b ENSGT00940000160762 #11 ENSGT00390000010128 #12 ENSGT00390000011958 ENSGT00530000064411 Neognathae ANCESTRAL SPECIES 1 ENSGT00530000064411 ENSGT00390000011958 ENSGT00390000010128 #12 ENSGT00940000160762 #11 ENSGT00500000044890.a.b.f ENSGT00500000044890.a.b.e ENSGT00390000010352 #10 ENSGT00940000153733.A #9 ENSGT00940000160906 #8 ENSGT00390000005673 ENSGT00940000160942 #7 ENSGT00940000157792 ENSGT01030000234618.D ENSGT01030000234566.e.b.b.a ENSGT01100000263477.D.c ENSGT00390000004056 #22 ENSGT00510000047334 #21 ENSGT00950000183068.a.b #20 ENSGT00390000013087 #19 ENSGT00940000155843 #18 ENSGT00390000016046 ENSGT00390000016589 #17 ENSGT00520000055616.a #16 ENSGT00940000155156.a.b ##14 ENSGT00940000155156.a.a ##14 ENSGT01030000234954 ENSGT01000000214875 ENSGT00940000155156.b #14 ENSGT00940000155453 ENSGT00940000154216.a ENSGT00440000034259.b Neognathae_b ANCESTRAL SPECIES ENSGT00530000064411 ENSGT00390000011958 ENSGT00390000010128 #12 ENSGT00940000160762 #11 ENSGT00500000044890.a.b.f ENSGT00500000044890.a.b.e ENSGT00390000010352 #10 ENSGT00940000153733.A #9 ENSGT00940000160906 #8 ENSGT00390000005673 ENSGT00940000160942 #7 ENSGT00940000157792 ENSGT01030000234618.D ENSGT01030000234566.e.b.b.a ENSGT01100000263477.D.c ENSGT00390000004056 #22 ENSGT00510000047334 #21 ENSGT00950000183068.a.b #20 ENSGT00390000013087 #19 ENSGT00940000155843 #18 ENSGT00390000016046 ENSGT00390000016589 #17 ENSGT00520000055616.a #16 ENSGT00940000155156.a.b ##14 ENSGT00940000155156.a.a ##14 ENSGT01030000234954 ENSGT01000000214875 ENSGT00940000155156.b #14 ENSGT00940000155453 ENSGT00940000154216.a ENSGT00440000034259.b Passeriformes ANCESTRAL SPECIES 1 ENSGT00530000064411 ENSGT00390000011958 ENSGT00390000010128 #12 ENSGT00940000160762 #11 ENSGT00500000044890.a.b.f ENSGT00500000044890.a.b.e ENSGT00390000010352 #10 ENSGT00940000153733.A #9 ENSGT00940000160906 #8 ENSGT00390000005673 ENSGT00940000160942 #7 ENSGT00940000157792 ENSGT01030000234618.D ENSGT01030000234566.e.b.b.a ENSGT01100000263477.D.c ENSGT00390000004056 #22 ENSGT00510000047334 #21 ENSGT00950000183068.a.b #20 ENSGT00390000013087 #19 ENSGT00940000155843 #18 ENSGT00390000016046 ENSGT00390000016589 #17 ENSGT00520000055616.a #16 ENSGT00940000155156.a.b ##14 ENSGT01030000234954 ENSGT01000000214875 ENSGT00940000155156.b #14 ENSGT00940000155453 ENSGT00940000154216.a ENSGT00440000034259.b ENSGT00940000156875 Passeriformes_d ANCESTRAL SPECIES 1 ENSGT00530000064411 ENSGT00390000011958 ENSGT00390000010128 #12 ENSGT00940000160762 #11 ENSGT00500000044890.a.b.f ENSGT00500000044890.a.b.e ENSGT00390000010352 #10 ENSGT00940000153733.A #9 ENSGT00940000160906 #8 ENSGT00390000005673 ENSGT00940000160942 #7 ENSGT00940000157792 ENSGT01030000234618.D ENSGT01030000234566.e.b.b.a ENSGT01100000263477.D.c ENSGT00390000004056 #22 ENSGT00510000047334 #21 ENSGT00950000183068.a.b #20 ENSGT00390000013087 #19 ENSGT00940000155843 #18 ENSGT00390000016046 ENSGT00520000055616.a #16 ENSGT00940000155156.a.b ##14 ENSGT01030000234954 ENSGT01000000214875 ENSGT00940000155156.b #14 ENSGT00940000155453 ENSGT00940000154216.a ENSGT00440000034259.b ENSGT00940000156875 ENSGT00940000166008 Passeriformes_g ANCESTRAL SPECIES 2 ENSGT00530000064411 ENSGT00390000011958 ENSGT00390000010128 #12 ENSGT00940000160762 #11 ENSGT00500000044890.a.b.f ENSGT00500000044890.a.b.e ENSGT00390000010352 #10 ENSGT00940000153733.A #9 ENSGT00940000160906 #8 ENSGT00390000005673 ENSGT00940000160942 #7 ENSGT00940000157792 ENSGT01030000234618.D ENSGT01030000234566.e.b.b.a ENSGT01100000263477.D.c ENSGT00390000004056 #22 ENSGT00510000047334 #21 ENSGT00950000183068.a.b #20 ENSGT00390000013087 #19 ENSGT00940000155843 #18 ENSGT00390000016046 ENSGT00520000055616.a #16 ENSGT01030000234954 ENSGT01000000214875 ENSGT00940000155156.b #14 ENSGT00940000155453 ENSGT00940000154216.a ENSGT00440000034259.b ENSGT00940000156875 ENSGT00940000166008 ENSGT00940000158099 Medium ground finch MODERN SPECIES 5 NDUFC2 (ENSGFOG00000006340) #10 ALG8 (ENSGFOG00000006325) #9 KCTD21 (ENSGFOG00000006319) #8 USP35 (ENSGFOG00000006306) #7 GAB2 (ENSGFOG00000006294) NARS2 (ENSGFOG00000006269) TENM4 (ENSGFOG00000006199) ENSGFOG00000006022 HIKESHI (ENSGFOG00000005993) #22 EED (ENSGFOG00000005964) #21 PICALM (ENSGFOG00000005903) #20 CCDC83 (ENSGFOG00000005886) #19 ENSGFOG00000005867 #18 CCDC89 (ENSGFOG00000005856) TMEM126A (ENSGFOG00000005849) #16 ENSGFOG00000005844 ENSGFOG00000005841 DLG2 (ENSGFOG00000005564) #14 CCDC90B (ENSGFOG00000005480) ANKRD42 (ENSGFOG00000005425) PCF11 (ENSGFOG00000005400) RAB30 (ENSGFOG00000005381) ENSGFOG00000005366 PRCP (ENSGFOG00000005352) Passeroidea ANCESTRAL SPECIES 5 ENSGT00950000182988.a.b.a ENSGT00530000063816.c ENSGT00390000010063 ENSGT00530000064411 ENSGT00390000011958 ENSGT00390000010128 #12 ENSGT00940000160762 #11 ENSGT00390000010352 #10 ENSGT00940000153733.A #9 ENSGT00940000160906 #8 ENSGT00390000005673 ENSGT00940000160942 #7 ENSGT00940000157792 ENSGT01030000234618.D ENSGT01030000234566.e.b.b.a ENSGT00390000004056 #22 ENSGT00510000047334 #21 ENSGT00950000183068.a.b #20 ENSGT00390000013087 #19 ENSGT00940000155843 #18 ENSGT00520000055616.a #16 ENSGT01000000214875 ENSGT00940000155156.b #14 ENSGT00940000155453 ENSGT00940000154216.a ENSGT00440000034259.b ENSGT00940000156875 ENSGT00940000166008 ENSGT00940000158099 ENSGT00940000154730.b ENSGT00950000183134.c.a.a #25 Zebra finch MODERN SPECIES INTS4 (ENSTGUG00000013020) #12 KCTD14 (ENSTGUG00000013019) #11 ENSTGUG00000013017 ENSTGUG00000020386 ENSTGUG00000027862 ENSTGUG00000020689 ENSTGUG00000022842 NDUFC2 (ENSTGUG00000022186) #10 ALG8 (ENSTGUG00000013014) #9 KCTD21 (ENSTGUG00000028148) #8 ENSTGUG00000021851 USP35 (ENSTGUG00000013010) #7 GAB2 (ENSTGUG00000013005) NARS2 (ENSTGUG00000013001) TENM4 (ENSTGUG00000012991) HIKESHI (ENSTGUG00000012986) #22 EED (ENSTGUG00000012982) #21 PICALM (ENSTGUG00000012969) #20 ENSTGUG00000012968 #19 SYTL2 (ENSTGUG00000012963) #18 TMEM126A (ENSTGUG00000012961) #16 DLG2 (ENSTGUG00000012956) #14 CCDC90B (ENSTGUG00000012950) ENSTGUG00000027854 ENSTGUG00000026995 ANKRD42 (ENSTGUG00000012948) PCF11 (ENSTGUG00000012944) RAB30 (ENSTGUG00000020570) ENSTGUG00000021729 PRCP (ENSTGUG00000012934) FAM181B (ENSTGUG00000022639) Common canary MODERN SPECIES 4 ENSSCAG00000001042 AQP11 (ENSSCAG00000001051) ENSSCAG00000001060 RSF1 (ENSSCAG00000001065) AAMDC (ENSSCAG00000001075) INTS4 (ENSSCAG00000001084) #12 KCTD14 (ENSSCAG00000001102) #11 NDUFC2 (ENSSCAG00000001114) #10 ALG8 (ENSSCAG00000001149) #9 KCTD21 (ENSSCAG00000001228) #8 ENSSCAG00000001238 USP35 (ENSSCAG00000001248) #7 GAB2 (ENSSCAG00000001264) NARS2 (ENSSCAG00000001306) TENM4 (ENSSCAG00000001503) HIKESHI (ENSSCAG00000001551) #22 EED (ENSSCAG00000001579) #21 PICALM (ENSSCAG00000001782) #20 ENSSCAG00000002460 #19 ENSSCAG00000002467 #18 TMEM126A (ENSSCAG00000002479) #16 ENSSCAG00000002488 DLG2 (ENSSCAG00000002598) #14 CCDC90B (ENSSCAG00000002918) ANKRD42 (ENSSCAG00000002924) PCF11 (ENSSCAG00000002940) RAB30 (ENSSCAG00000002948) ENSSCAG00000002952 PRCP (ENSSCAG00000002976) ME3 (ENSSCAG00000002985) #25 PRSS23 (ENSSCAG00000002988) #26 Flycatcher MODERN SPECIES CLNS1A (ENSFALG00000024366) RSF1 (ENSFALG00000007612) AAMDC (ENSFALG00000027164) INTS4 (ENSFALG00000007624) #12 KCTD14 (ENSFALG00000024292) #11 ENSFALG00000022877 ENSFALG00000015008 ENSFALG00000015022 ALG8 (ENSFALG00000007638) #9 KCTD21 (ENSFALG00000015047) #8 USP35 (ENSFALG00000007648) #7 GAB2 (ENSFALG00000007657) NARS2 (ENSFALG00000026154) TENM4 (ENSFALG00000007664) ENSFALG00000026075 HIKESHI (ENSFALG00000023535) #22 EED (ENSFALG00000007678) #21 PICALM (ENSFALG00000007689) #20 CCDC83 (ENSFALG00000007697) #19 ENSFALG00000007705 #18 TMEM126A (ENSFALG00000007726) #16 ENSFALG00000024900 ##14 ENSFALG00000029086 ENSFALG00000007731 #14 CCDC90B (ENSFALG00000007739) ANKRD42 (ENSFALG00000007744) PCF11 (ENSFALG00000007754) RAB30 (ENSFALG00000007765) ENSFALG00000027423 PRCP (ENSFALG00000007776) ENSFALG00000007780 Great tit MODERN SPECIES AQP11 (ENSPMJG00000002710) CLNS1A (ENSPMJG00000002686) RSF1 (ENSPMJG00000002677) AAMDC (ENSPMJG00000002671) INTS4 (ENSPMJG00000002654) #12 KCTD14 (ENSPMJG00000002652) #11 ENSPMJG00000002650 NDUFC2 (ENSPMJG00000002647) #10 ALG8 (ENSPMJG00000002636) #9 KCTD21 (ENSPMJG00000002622) #8 USP35 (ENSPMJG00000002606) #7 GAB2 (ENSPMJG00000002591) NARS2 (ENSPMJG00000002370) TENM4 (ENSPMJG00000002222) ENSPMJG00000001878 HIKESHI (ENSPMJG00000001825) #22 EED (ENSPMJG00000001816) #21 PICALM (ENSPMJG00000001746) #20 CCDC83 (ENSPMJG00000001732) #19 SYTL2 (ENSPMJG00000001685) #18 CREBZF (ENSPMJG00000001593) #17 TMEM126A (ENSPMJG00000001566) #16 ENSPMJG00000001563 ##14 ENSPMJG00000001264 #14 CCDC90B (ENSPMJG00000001139) ANKRD42 (ENSPMJG00000001132) PCF11 (ENSPMJG00000001112) RAB30 (ENSPMJG00000001108) ENSPMJG00000001091 PRCP (ENSPMJG00000001085) FAM181B (ENSPMJG00000001078) Neognathae_c ANCESTRAL SPECIES 11 ENSGT00390000010063 ENSGT00530000064411 ENSGT00390000011958 ENSGT00390000010128 #12 ENSGT00940000160762 #11 ENSGT00500000044890.a.b.f ENSGT00500000044890.a.b.e ENSGT00390000010352 #10 ENSGT00940000153733.A #9 ENSGT00940000160906 #8 ENSGT00940000160942 #7 ENSGT00940000157792 ENSGT01030000234618.D ENSGT01030000234566.e.b.b.a ENSGT01100000263477.D.c ENSGT00390000004056 #22 ENSGT00510000047334 #21 ENSGT00950000183068.a.b #20 ENSGT00390000013087 #19 ENSGT00940000155843 #18 ENSGT00390000016046 ENSGT00390000016589 #17 ENSGT00520000055616.a #16 ENSGT00940000155156.a.b ##14 ENSGT00940000155156.a.a ##14 ENSGT00940000155156.b #14 ENSGT00940000155453 ENSGT00940000154216.a ENSGT00440000034259.b ENSGT00940000156875 ENSGT00940000166008 Kakapo MODERN SPECIES 11 CLNS1A (ENSSHBG00005019157) RSF1 (ENSSHBG00005019153) AAMDC (ENSSHBG00005019150) ENSSHBG00005019147 #12 KCTD14 (ENSSHBG00005019145) #11 ENSSHBG00005019143 ENSSHBG00005019141 NDUFC2 (ENSSHBG00005019140) #10 ALG8 (ENSSHBG00005019138) #9 KCTD21 (ENSSHBG00005019132) #8 USP35 (ENSSHBG00005019128) #7 GAB2 (ENSSHBG00005019121) NARS2 (ENSSHBG00005019116) TENM4 (ENSSHBG00005016336) ENSSHBG00005016096 HIKESHI (ENSSHBG00005016088) #22 EED (ENSSHBG00005016083) #21 PICALM (ENSSHBG00005016076) #20 CCDC83 (ENSSHBG00005016062) #19 ENSSHBG00005016055 #18 ENSSHBG00005016046 #18 CCDC89 (ENSSHBG00005016044) CREBZF (ENSSHBG00005016039) #17 TMEM126A (ENSSHBG00005016034) #16 ENSSHBG00005016026 ##14 ENSSHBG00005003273 #14 CCDC90B (ENSSHBG00005001860) ANKRD42 (ENSSHBG00005001836) PCF11 (ENSSHBG00005001785) RAB30 (ENSSHBG00005000224) ENSSHBG00005000219 Golden eagle MODERN SPECIES 10 RSF1 (ENSACCG00020009744) AAMDC (ENSACCG00020009724) INTS4 (ENSACCG00020009671) #12 KCTD14 (ENSACCG00020009629) #11 ENSACCG00020009616 ENSACCG00020009607 ENSACCG00020009591 NDUFC2 (ENSACCG00020009583) #10 ALG8 (ENSACCG00020009570) #9 KCTD21 (ENSACCG00020009555) #8 USP35 (ENSACCG00020009536) #7 GAB2 (ENSACCG00020009521) NARS2 (ENSACCG00020009489) TENM4 (ENSACCG00020009361) ENSACCG00020009166 HIKESHI (ENSACCG00020009148) #22 EED (ENSACCG00020009118) #21 PICALM (ENSACCG00020009051) #20 CCDC83 (ENSACCG00020008977) #19 ENSACCG00020008947 #18 CCDC89 (ENSACCG00020008913) CREBZF (ENSACCG00020008904) #17 TMEM126A (ENSACCG00020008886) #16 ENSACCG00020008856 ##14 ENSACCG00020008763 ##14 CCDC90B (ENSACCG00020008670) ANKRD42 (ENSACCG00020008637) PCF11 (ENSACCG00020008605) ENSACCG00020008589 RAB30 (ENSACCG00020008577) ENSACCG00020008564 Galloanserae ANCESTRAL SPECIES 1 ENSGT00390000010063 ENSGT00530000064411 ENSGT00390000011958 ENSGT00390000010128 #12 ENSGT00940000160762 #11 ENSGT00500000044890.a.b.f ENSGT00500000044890.a.b.e ENSGT00390000010352 #10 ENSGT00940000153733.A #9 ENSGT00940000160906 #8 ENSGT00940000160942 #7 ENSGT00940000157792 ENSGT01030000234618.D ENSGT01030000234566.e.b.b.a ENSGT01100000263477.D.c ENSGT00390000004056 #22 ENSGT00510000047334 #21 ENSGT00950000183068.a.b #20 ENSGT00390000013087 #19 ENSGT00940000155843 #18 ENSGT00390000016046 ENSGT00390000016589 #17 ENSGT00520000055616.a #16 ENSGT00940000155156.a.b ##14 ENSGT00940000155156.a.a ##14 ENSGT00940000155453 ENSGT00940000154216.a ENSGT00440000034259.b ENSGT00940000156875 ENSGT00940000166008 ENSGT00940000158099 Anatidae ANCESTRAL SPECIES 64 ENSGT00530000063816.c ENSGT00390000010063 ENSGT00530000064411 ENSGT00390000011958 ENSGT00390000010128 #12 ENSGT00940000160762 #11 ENSGT00500000044890.a.b.f ENSGT00390000010352 #10 ENSGT00940000153733.A #9 ENSGT00940000160906 #8 ENSGT00940000160942 #7 ENSGT00940000157792 ENSGT01030000234618.D ENSGT01030000234566.e.b.b.a ENSGT01100000263477.D.c ENSGT00390000004056 #22 ENSGT00510000047334 #21 ENSGT00950000183068.a.b #20 ENSGT00390000013087 #19 ENSGT00940000155843 #18 ENSGT00390000016046 ENSGT00520000055616.a #16 ENSGT00940000155156.a.b ##14 ENSGT00940000155156.a.a ##14 Pink-footed goose MODERN SPECIES 81 AQP11 (ENSABRG00000004675) CLNS1A (ENSABRG00000004719) RSF1 (ENSABRG00000004729) AAMDC (ENSABRG00000004768) INTS4 (ENSABRG00000004795) #12 KCTD14 (ENSABRG00000004823) #11 ENSABRG00000004830 NDUFC2 (ENSABRG00000004836) #10 ALG8 (ENSABRG00000004842) #9 KCTD21 (ENSABRG00000004855) #8 USP35 (ENSABRG00000004859) #7 GAB2 (ENSABRG00000004871) ENSABRG00000004892 TENM4 (ENSABRG00000004910) ENSABRG00000005009 HIKESHI (ENSABRG00000005045) #22 EED (ENSABRG00000005077) #21 PICALM (ENSABRG00000005201) #20 ENSABRG00000005262 #18 CCDC89 (ENSABRG00000005288) TMEM126A (ENSABRG00000005297) #16 ENSABRG00000005304 ##14 ENSABRG00000005335 ##14 Duck MODERN SPECIES ENSAPLG00000009988 EMSY (ENSAPLG00000010078) THAP12 (ENSAPLG00000010379) WNT11 (ENSAPLG00000010439) UVRAG (ENSAPLG00000010570) DGAT2 (ENSAPLG00000011172) MOGAT2 (ENSAPLG00000011246) MAP6 (ENSAPLG00000029565) ENSAPLG00000021295 GDPD5 (ENSAPLG00000011999) ENSAPLG00000025890 SERPINH1 (ENSAPLG00000014348) ENSAPLG00000014513 FCHSD2 (ENSAPLG00000014854) ENSAPLG00000021685 HIKESHI (ENSAPLG00000018234) #22 EED (ENSAPLG00000012886) #21 PICALM (ENSAPLG00000012265) #20 CCDC83 (ENSAPLG00000012173) #19 ENSAPLG00000011673 #18 CCDC89 (ENSAPLG00000011655) ENSAPLG00000017312 RAB30 (ENSAPLG00000019842) ENSAPLG00000020064 PRCP (ENSAPLG00000012966) ENSAPLG00000022867 FAM181B (ENSAPLG00000030157) UFM1 (ENSAPLG00000030396) FREM2 (ENSAPLG00000005184) ENSAPLG00000004070 STOML3 (ENSAPLG00000003783) Phasianidae ANCESTRAL SPECIES ENSGT00390000010063 ENSGT00530000064411 ENSGT00390000011958 ENSGT00390000010128 #12 ENSGT00940000160762 #11 ENSGT00500000044890.a.b.f ENSGT00500000044890.a.b.e ENSGT00390000010352 #10 ENSGT00940000153733.A.c #9 ENSGT00940000160906 #8 ENSGT00940000160942.c #7 ENSGT00940000157792 ENSGT01030000234618.D ENSGT01030000234566.e.b.b.a ENSGT01100000263477.D.c ENSGT00390000004056 #22 ENSGT00510000047334 #21 ENSGT00950000183068.a.b #20 ENSGT00390000013087 #19 ENSGT00940000155843 #18 ENSGT00390000016046 ENSGT00390000016589 #17 ENSGT00520000055616.a #16 ENSGT00940000155156.a.b ##14 ENSGT00940000155156.a.a ##14 ENSGT00940000155453 ENSGT00940000154216.a ENSGT00440000034259.b ENSGT00940000156875 ENSGT00940000166008 ENSGT00940000158099 Japanese quail MODERN SPECIES AAMDC (ENSCJPG00005004505) INTS4 (ENSCJPG00005004504) #12 KCTD14 (ENSCJPG00005004503) #11 ENSCJPG00005004501 ENSCJPG00005004500 ENSCJPG00005004498 #7 ENSCJPG00005004497 NDUFC2 (ENSCJPG00005004495) #10 ALG8 (ENSCJPG00005004492) #9 KCTD21 (ENSCJPG00005004491) #8 ENSCJPG00005004490 #7 GAB2 (ENSCJPG00005004489) NARS2 (ENSCJPG00005004456) TENM4 (ENSCJPG00005004438) ENSCJPG00005004403 HIKESHI (ENSCJPG00005004388) #22 EED (ENSCJPG00005004385) #21 PICALM (ENSCJPG00005004383) #20 ENSCJPG00005004381 #19 ENSCJPG00005004380 #18 CCDC89 (ENSCJPG00005004376) CREBZF (ENSCJPG00005004375) #17 TMEM126A (ENSCJPG00005004371) #16 ENSCJPG00005004364 ##14 ENSCJPG00005004310 ##14 CCDC90B (ENSCJPG00005004187) ANKRD42 (ENSCJPG00005004177) ENSCJPG00005004176 RAB30 (ENSCJPG00005004175) ENSCJPG00005004173 PRCP (ENSCJPG00005004171) Phasianidae_b ANCESTRAL SPECIES ENSGT00390000010063 ENSGT00530000064411 ENSGT00390000011958 ENSGT00390000010128 #12 ENSGT00940000160762 #11 ENSGT00500000044890.a.b.f ENSGT00500000044890.a.b.e ENSGT00390000010352 #10 ENSGT00940000153733.A.c #9 ENSGT00940000160906 #8 ENSGT00940000160942.c #7 ENSGT00940000157792 ENSGT01030000234618.D ENSGT01030000234566.e.b.b.a ENSGT01100000263477.D.c ENSGT00390000004056 #22 ENSGT00510000047334 #21 ENSGT00950000183068.a.b #20 ENSGT00390000013087 #19 ENSGT00940000155843 #18 ENSGT00390000016046 ENSGT00390000016589 #17 ENSGT00520000055616.a #16 ENSGT00940000155156.a.a ##14 ENSGT00940000155453 ENSGT00940000154216.a ENSGT00440000034259.b ENSGT00940000156875 ENSGT00940000166008 ENSGT00940000158099 ENSGT00940000154730.b Chicken MODERN SPECIES AAMDC (ENSGALG00010002039) INTS4 (ENSGALG00010001997) #12 KCTD14 (ENSGALG00010001987) #11 THRSP (ENSGALG00010001976) THRSPB (ENSGALG00010003522) NDUFC2 (ENSGALG00010001957) #10 ALG8 (ENSGALG00010001938) #9 KCTD21 (ENSGALG00010001928) #8 USP35 (ENSGALG00010001911) #7 GAB2 (ENSGALG00010003818) ENSGALG00010001905 NARS2 (ENSGALG00010001903) TENM4 (ENSGALG00010009135) ENSGALG00010009169 ENSGALG00010009107 HIKESHI (ENSGALG00010009101) #22 EED (ENSGALG00010009092) #21 PICALM (ENSGALG00010008170) #20 CCDC83 (ENSGALG00010008119) #19 SYTL2 (ENSGALG00010008111) #18 CCDC89 (ENSGALG00010008102) CREBZF (ENSGALG00010009144) #17 TMEM126A (ENSGALG00010008098) #16 DLG2 (ENSGALG00010008069) ##14 CCDC90B (ENSGALG00010008012) ANKRD42 (ENSGALG00010008005) PCF11 (ENSGALG00010007991) RAB30 (ENSGALG00010007979) ENSGALG00010007846 ENSGALG00010007818 PRCP (ENSGALG00010007811) Turkey MODERN SPECIES ENSMGAG00000015229 ENSMGAG00000015228 PCF11 (ENSMGAG00000015231) ENSMGAG00000015233 ENSMGAG00000015232 ENSMGAG00000015234 ##14 ENSMGAG00000016818 ##14 ENSMGAG00000020572 ENSMGAG00000020506 ENSMGAG00000015236 #16 ENSMGAG00000015637 ENSMGAG00000015237 #18 ENSMGAG00000015238 #19 ENSMGAG00000015241 #20 ENSMGAG00000015239 #21 ENSMGAG00000015242 #22 ENSMGAG00000019282 ENSMGAG00000015244 ENSMGAG00000018402 ENSMGAG00000015247 GAB2 (ENSMGAG00000015248) ENSMGAG00000018248 #9 KCTD21 (ENSMGAG00000017260) #8 ENSMGAG00000015249 #9 ENSMGAG00000015250 ENSMGAG00000015251 #7 ENSMGAG00000021463 #7 AAMDC (ENSMGAG00000019319) ENSMGAG00000015254 #12 KCTD14 (ENSMGAG00000015253) #11 ENSMGAG00000015252 African ostrich MODERN SPECIES 538 CCDC83 (ENSSCUG00000004709) #19 PICALM (ENSSCUG00000004695) #20 EED (ENSSCUG00000004682) #21 HIKESHI (ENSSCUG00000004675) #22 ENSSCUG00000004666 TENM4 (ENSSCUG00000004650) ENSSCUG00000004646 NARS2 (ENSSCUG00000004641) ENSSCUG00000004638 GAB2 (ENSSCUG00000004633) USP35 (ENSSCUG00000004630) #7 KCTD21 (ENSSCUG00000004628) #8 ALG8 (ENSSCUG00000004620) #9 NDUFC2 (ENSSCUG00000004615) #10 Australian saltwater crocodile MODERN SPECIES 27 ENSCPRG00005016261 PRCP (ENSCPRG00005016228) DDIAS (ENSCPRG00005016217) RAB30 (ENSCPRG00005016207) PCF11 (ENSCPRG00005016193) ANKRD42 (ENSCPRG00005016174) CCDC90B (ENSCPRG00005016161) ENSCPRG00005016157 ENSCPRG00005016151 #14 ENSCPRG00005016140 ##14 TMEM126A (ENSCPRG00005016136) #16 ENSCPRG00005016131 #18 CCDC83 (ENSCPRG00005016129) #19 PICALM (ENSCPRG00005016082) #20 EED (ENSCPRG00005016068) #21 HIKESHI (ENSCPRG00005016067) #22 ME3 (ENSCPRG00005016065) #25 PRSS23 (ENSCPRG00005016061) #26 FZD4 (ENSCPRG00005016056) #27 TMEM135 (ENSCPRG00005016050) #28 RAB38 (ENSCPRG00005016034) #29 CTSC (ENSCPRG00005016032) #30 GRM5 (ENSCPRG00005016003) #31 TYR (ENSCPRG00005015987) #32 NOX4 (ENSCPRG00005015970) #33 FOLH1 (ENSCPRG00005015598) #34 ENSCPRG00005015519 #36 ENSCPRG00005015516 #36 CHORDC1 (ENSCPRG00005015503) #37 FAT3 (ENSCPRG00005015491) MTNR1B (ENSCPRG00005015445) Anura ANCESTRAL SPECIES 28 ENSGT00940000154730.b ENSGT00940000158099 ENSGT00940000166008 ENSGT00940000156875 ENSGT00440000034259.b ENSGT00940000154216.a ENSGT00940000155453 ENSGT00940000155156.b #14 ENSGT01030000234954 ENSGT00520000055616.a #16 ENSGT00390000016589 #17 ENSGT00940000155843 #18 ENSGT00390000013087 #19 ENSGT00950000183068.a.b #20 ENSGT00510000047334 #21 ENSGT00390000004056 #22 ENSGT00390000011985 #23 ENSGT00950000183134.c.a.a #25 ENSGT00390000000155.a.a #26 ENSGT00940000157141 #27 ENSGT00390000000303 #28 ENSGT00940000157301.b #29 ENSGT00940000155787 #30 ENSGT01030000234595.A.a #31 ENSGT00940000155336.f #32 ENSGT00940000159621 #33 ENSGT01030000234598.b.a.b.i #36 ENSGT00940000154174 #37 ENSGT00940000154981 ENSGT00940000162341 ENSGT00940000160117 Frog MODERN SPECIES 2 FAM181B (ENSXETG00000037323) ENSXETG00000042576 ENSXETG00000047484 ENSXETG00000046737 tenm4 (ENSXETG00000015288) klhdc1 (ENSXETG00000010455) gab2 (ENSXETG00000010452) usp35 (ENSXETG00000010451) #7 alg8 (ENSXETG00000010450) #9 kctd14 (ENSXETG00000010449) #11 ints4 (ENSXETG00000010447) #12 aamdc (ENSXETG00000038985) rsf1 (ENSXETG00000010445) clns1a (ENSXETG00000010442) eed (ENSXETG00000010440) #21 hikeshi (ENSXETG00000010439) #22 ccdc81 (ENSXETG00000010437) #23 me3 (ENSXETG00000010436) #25 prss23 (ENSXETG00000044339) #26 fzd4 (ENSXETG00000034910) #27 tmem135 (ENSXETG00000010432) #28 ENSXETG00000035317 ENSXETG00000011752 rab38 (ENSXETG00000011751) #29 ctsc (ENSXETG00000011748) #30 grm5 (ENSXETG00000011740) #31 tyr (ENSXETG00000011738) #32 nox4 (ENSXETG00000011734) #33 ENSXETG00000042189 ENSXETG00000040698 folh1 (ENSXETG00000011728) #36 Coelacanth MODERN SPECIES 464 ENSLACG00000016646 TMEM126A (ENSLACG00000016479) #16 CREBZF (ENSLACG00000016406) #17 ELAC1 (ENSLACG00000016367) ENSLACG00000016175 #18 ENSLACG00000022643 #19 PICALM (ENSLACG00000014492) #20 EED (ENSLACG00000013624) #21 HIKESHI (ENSLACG00000013404) #22 CCDC81 (ENSLACG00000012549) #23 ME3 (ENSLACG00000009057) #25 PRSS23 (ENSLACG00000007588) #26