Fungi/Metazoa group	ANCESTRAL SPECIES																	ENSGT00390000004056 #22
Bilateria	ANCESTRAL SPECIES																	ENSGT00390000004056 #22
Chordata	ANCESTRAL SPECIES																	ENSGT00390000004056 #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000004056 #22
Gnathostomata	ANCESTRAL SPECIES	14	ENSGT01030000234566.e.b.b.a	ENSGT00980000198746	ENSGT00940000158099	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156 #13	ENSGT00520000055616.a #15	ENSGT00940000155843 #18	ENSGT00970000197061	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301 #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b	ENSGT00940000154174	ENSGT00940000160117	ENSGT00940000153190.B.a	ENSGT00390000015987
Euteleostomi	ANCESTRAL SPECIES	34	ENSGT00940000158099	ENSGT00940000165087	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01030000234954	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000160117	ENSGT00940000153190.B.a
Sarcopterygii	ANCESTRAL SPECIES	52	ENSGT00940000154730.b	ENSGT00940000158099	ENSGT00940000165087	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00940000167196	ENSGT01030000234598.b.a.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000160117
Tetrapoda	ANCESTRAL SPECIES		ENSGT00940000158099	ENSGT00940000165087	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01030000234954	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117
Amniota	ANCESTRAL SPECIES		ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00940000155156.a.b ##13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00950000185226	ENSGT00940000167196	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174
Mammalia	ANCESTRAL SPECIES	7	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00950000185226	ENSGT00940000167196	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174
Theria	ANCESTRAL SPECIES	15	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00940000155156.a.b ##13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00950000185226	ENSGT00940000167196	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174
Eutheria	ANCESTRAL SPECIES	3	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00940000155156.a.b ##13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00950000185226	ENSGT00940000167196	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000160005.A	ENSGT00940000163858
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00940000155156.a.b ##13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00950000185226	ENSGT00940000167196	ENSGT01030000234598.b.a.b.k.a
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00990000214054	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00950000185226	ENSGT00940000167196	ENSGT01030000234598.b.a.b.k.a
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00990000214054	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174
Glires	ANCESTRAL SPECIES	1	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00990000214054	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174
Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00990000214054	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453.n.b #10	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174.f	ENSGT00940000154981
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453.o ##11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163440	ENSGT00940000160005.A.n	ENSGT00940000162409
Eurasian red squirrel	MODERN SPECIES	2	PCF11 (ENSSVLG00005015739) #7	ANKRD42 (ENSSVLG00005015819) #8	ENSSVLG00005015896 #9	ENSSVLG00005015927 #10	ENSSVLG00005015977 #11	ENSSVLG00005016059 #12	DLG2 (ENSSVLG00005016472) #13	TMEM126B (ENSSVLG00005019236) #14	TMEM126A (ENSSVLG00005019268) #15	CREBZF (ENSSVLG00005019339) #16	CCDC89 (ENSSVLG00005019395) #17	SYTL2 (ENSSVLG00005019752) #18	CCDC83 (ENSSVLG00005020010) #19	PICALM (ENSSVLG00005020135) #20	EED (ENSSVLG00005020425) #21	HIKESHI (ENSSVLG00005020558) #22	CCDC81 (ENSSVLG00005020655) #23	ENSSVLG00005021006 #24	ME3 (ENSSVLG00005021021) #25	ENSSVLG00005021162 #26	ENSSVLG00005021180 #27	PRSS23 (ENSSVLG00005021223) #28	FZD4 (ENSSVLG00005021251) #29	TMEM135 (ENSSVLG00005021306) #30	RAB38 (ENSSVLG00005021462) #31	CTSC (ENSSVLG00005021500) #32	GRM5 (ENSSVLG00005021581) #33	ENSSVLG00005021721 #34	TYR (ENSSVLG00005021737) #35	NOX4 (ENSSVLG00005021836) #36	ENSSVLG00005022060 #37
Marmotini	ANCESTRAL SPECIES	28	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453.o ##11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.a	ENSGT00940000162409.b	ENSGT00940000163419
Alpin marmot	MODERN SPECIES	3	PRCP (ENSMMMG00000006496)	DDIAS (ENSMMMG00000006475)	RAB30 (ENSMMMG00000006458)	PCF11 (ENSMMMG00000006414) #7	ANKRD42 (ENSMMMG00000006331) #8	CCDC90B (ENSMMMG00000006292) ##11	ENSMMMG00000006288	DLG2 (ENSMMMG00000005928) #13	TMEM126B (ENSMMMG00000005835) #14	ENSMMMG00000005829 #15	CCDC89 (ENSMMMG00000005814) #17	ENSMMMG00000005468 #18	CCDC83 (ENSMMMG00000005426) #19	PICALM (ENSMMMG00000005144) #20	EED (ENSMMMG00000005118) #21	HIKESHI (ENSMMMG00000005096) #22	CCDC81 (ENSMMMG00000005061) #23	ME3 (ENSMMMG00000004996) #25	PRSS23 (ENSMMMG00000004975) #28	FZD4 (ENSMMMG00000004931) #29	TMEM135 (ENSMMMG00000004893) #30	RAB38 (ENSMMMG00000004867) #31	CTSC (ENSMMMG00000004793) #32	GRM5 (ENSMMMG00000004503) #33	TYR (ENSMMMG00000004445) #35	NOX4 (ENSMMMG00000004402) #36	ENSMMMG00000004374	FOLH1 (ENSMMMG00000004192)
Marmotini_b	ANCESTRAL SPECIES	13	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453.n.a #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.a	ENSGT00940000162409.b
Arctic ground squirrel	MODERN SPECIES	249																HIKESHI (ENSUPAG00010006622) #22	CCDC81 (ENSUPAG00010006635) #23	ME3 (ENSUPAG00010006666) #25	PRSS23 (ENSUPAG00010006681) #28	FZD4 (ENSUPAG00010006688) #29	TMEM135 (ENSUPAG00010006691) #30	RAB38 (ENSUPAG00010006729) #31	ENSUPAG00010006747 #32	GRM5 (ENSUPAG00010006754) #33	ENSUPAG00010006768	ENSUPAG00010006773 #33	TYR (ENSUPAG00010006775) #35	NOX4 (ENSUPAG00010006782) #36	ENSUPAG00010006804	ENSUPAG00010006822	ENSUPAG00010007051
Squirrel	MODERN SPECIES	98	DDIAS (ENSSTOG00000004978)	RAB30 (ENSSTOG00000020966)	PCF11 (ENSSTOG00000005515) #7	ANKRD42 (ENSSTOG00000001620) #8	CCDC90B (ENSSTOG00000001632) #11	ENSSTOG00000024205	DLG2 (ENSSTOG00000002895) #13	TMEM126B (ENSSTOG00000002952) #14	ENSSTOG00000016101 #15	CREBZF (ENSSTOG00000002975) #16	CCDC89 (ENSSTOG00000002976) #17	SYTL2 (ENSSTOG00000027973) #18	CCDC83 (ENSSTOG00000008671) #19	PICALM (ENSSTOG00000008689) #20	EED (ENSSTOG00000004680) #21	HIKESHI (ENSSTOG00000004702) #22	CCDC81 (ENSSTOG00000014479) #23	ENSSTOG00000028574 #24	ME3 (ENSSTOG00000014488) #25	PRSS23 (ENSSTOG00000007434) #28	FZD4 (ENSSTOG00000007437) #29
Hystricomorpha	ANCESTRAL SPECIES	5	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453.n.b.b #10	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174.f	ENSGT00940000154981	ENSGT00940000162341
Hystricomorpha_a	ANCESTRAL SPECIES	10	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453.n.b.b #10	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174.f	ENSGT00940000154981	ENSGT00940000162341
Hystricomorpha_b	ANCESTRAL SPECIES	5	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453.n.b.a.a.b #10	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174.f	ENSGT00940000154981	ENSGT00940000162341
Degu	DUPLICATION
Degu	MODERN SPECIES	90	PCF11 (ENSODEG00000003874) #7	ANKRD42 (ENSODEG00000003920) #8	CCDC90B (ENSODEG00000003995) #10	DLG2 (ENSODEG00000004167) #13	ENSODEG00000004281	TMEM126B (ENSODEG00000004299) #14	ENSODEG00000004318 #15	CREBZF (ENSODEG00000004328) #16	CCDC89 (ENSODEG00000004335) #17	ENSODEG00000004345 #18	ENSODEG00000004377	CCDC83 (ENSODEG00000004398) #19	PICALM (ENSODEG00000004438) #20	ENSODEG00000004459	ENSODEG00000004489 #21	ENSODEG00000005068 #22	CCDC81 (ENSODEG00000005105) #23	ME3 (ENSODEG00000005138) #25	PRSS23 (ENSODEG00000019151) #28	FZD4 (ENSODEG00000005182) #29	TMEM135 (ENSODEG00000005219) #30
Degu	MODERN SPECIES	153	CENPX (ENSODEG00000011229)	ASPSCR1 (ENSODEG00000009351)	NOTUM (ENSODEG00000008781)	ENSODEG00000009159	ENSODEG00000008271	MAFG (ENSODEG00000008381)	SIRT7 (ENSODEG00000008260)	PCYT2 (ENSODEG00000008954)	ANAPC11 (ENSODEG00000007931)	ALYREF (ENSODEG00000008359)	ENSODEG00000009046	P4HB (ENSODEG00000009563)	PPP1R27 (ENSODEG00000010740)	MCRIP1 (ENSODEG00000007940)	GCGR (ENSODEG00000008460)	ENSODEG00000008220 #22	SLC25A10 (ENSODEG00000008541)	MRPL12 (ENSODEG00000008765)	HGS (ENSODEG00000007976)	ARL16 (ENSODEG00000008186)	CCDC137 (ENSODEG00000009523)	OXLD1 (ENSODEG00000009077)	PDE6G (ENSODEG00000009291)	TSPAN10 (ENSODEG00000009598)	NPLOC4 (ENSODEG00000008315)	ENSODEG00000008214	FSCN2 (ENSODEG00000008403)	ENSODEG00000008412	BAHCC1 (ENSODEG00000009968)	ENSODEG00000009081	NDUFAF8 (ENSODEG00000009889)
Long-tailed chinchilla	MODERN SPECIES	121	RAB30 (ENSCLAG00000014030)	ENSCLAG00000017890	PCF11 (ENSCLAG00000013830) #7	ANKRD42 (ENSCLAG00000015518) #8	CCDC90B (ENSCLAG00000015859) #10	ENSCLAG00000014879	DLG2 (ENSCLAG00000013708) #13	TMEM126B (ENSCLAG00000015945) #14	TMEM126A (ENSCLAG00000013581) #15	CREBZF (ENSCLAG00000014349) #16	CCDC89 (ENSCLAG00000018101) #17	ENSCLAG00000015658 #18	CCDC83 (ENSCLAG00000013107) #19	PICALM (ENSCLAG00000014073) #20	EED (ENSCLAG00000014597) #21	HIKESHI (ENSCLAG00000015127) #22	CCDC81 (ENSCLAG00000015703) #23	ME3 (ENSCLAG00000014004) #25	PRSS23 (ENSCLAG00000014382) #28	FZD4 (ENSCLAG00000013230) #29	TMEM135 (ENSCLAG00000012648) #30	RAB38 (ENSCLAG00000013006) #31	CTSC (ENSCLAG00000015662) #32	ENSCLAG00000014570 #33	TYR (ENSCLAG00000016284) #35	ENSCLAG00000013267	NOX4 (ENSCLAG00000014011) #36	FOLH1 (ENSCLAG00000014594)	NAALAD2 (ENSCLAG00000012474)	ENSCLAG00000014963	FAT3 (ENSCLAG00000013669)
Guinea pig	MODERN SPECIES	40	TENM4 (ENSCPOG00000002931)	PRCP (ENSCPOG00000030619)	DDIAS (ENSCPOG00000013049)	RAB30 (ENSCPOG00000005047)	PCF11 (ENSCPOG00000004103) #7	ANKRD42 (ENSCPOG00000011236) #8	CCDC90B (ENSCPOG00000011822) #10	DLG2 (ENSCPOG00000010885) #13	TMEM126B (ENSCPOG00000000924) #14	TMEM126A (ENSCPOG00000032709) #15	CREBZF (ENSCPOG00000000925) #16	ENSCPOG00000006998 #18	CCDC83 (ENSCPOG00000015279) #19	PICALM (ENSCPOG00000020758) #20	EED (ENSCPOG00000001815) #21	HIKESHI (ENSCPOG00000020182) #22	CCDC81 (ENSCPOG00000004853) #23	ME3 (ENSCPOG00000004861) #25	PRSS23 (ENSCPOG00000031160) #28	FZD4 (ENSCPOG00000014369) #29	TMEM135 (ENSCPOG00000033735) #30	RAB38 (ENSCPOG00000033635) #31	CTSC (ENSCPOG00000014848) #32	GRM5 (ENSCPOG00000009056) #33	ENSCPOG00000039497	TYR (ENSCPOG00000010608) #35	NOX4 (ENSCPOG00000040335) #36	FOLH1 (ENSCPOG00000003797)	NAALAD2 (ENSCPOG00000038440)	CHORDC1 (ENSCPOG00000022614)	ENSCPOG00000010626
Rodentia_B	ANCESTRAL SPECIES	33	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00990000214054	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a
Kangaroo rat	MODERN SPECIES	341	ENSDORG00000009384	ENSDORG00000010504	Pcf11 (ENSDORG00000010050) #7	Ankrd42 (ENSDORG00000013726) #8	Ccdc90b (ENSDORG00000009418) #11	Dlg2 (ENSDORG00000010409) #13	Tmem126b (ENSDORG00000006407) #14	Tmem126a (ENSDORG00000026208) #15	ENSDORG00000006410 #18	ENSDORG00000025554 #18	Ccdc83 (ENSDORG00000006094) #19	Picalm (ENSDORG00000006095) #20	ENSDORG00000024919	ENSDORG00000027843	Eed (ENSDORG00000004240) #21	Hikeshi (ENSDORG00000026855) #22	Ccdc81 (ENSDORG00000004452) #23	ENSDORG00000028501 #24	Me3 (ENSDORG00000004453) #25	Prss23 (ENSDORG00000023881) #28	Fzd4 (ENSDORG00000025486) #29	Tmem135 (ENSDORG00000011193) #30	ENSDORG00000028149	ENSDORG00000029361	Rab38 (ENSDORG00000002058) #31	Ctsc (ENSDORG00000014120) #32	Grm5 (ENSDORG00000001327) #33	ENSDORG00000024265	Tyr (ENSDORG00000002350) #35
Myomorpha	ANCESTRAL SPECIES	13	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00990000214054	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT01100000263570.A	ENSGT01090000260024.A.a.b.a.a	ENSGT01050000244828.c.b.b.b.c.a.a.a
Lesser Egyptian jerboa	MODERN SPECIES	65	ENSJJAG00000012172 #7	Ankrd42 (ENSJJAG00000023528) #8	ENSJJAG00000023792 #11	ENSJJAG00000011365	ENSJJAG00000014690	ENSJJAG00000010286	Dlg2 (ENSJJAG00000023731) #13	Tmem126b (ENSJJAG00000012522) #14	Tmem126a (ENSJJAG00000008852) #15	Crebzf (ENSJJAG00000010759) #16	ENSJJAG00000010545 #18	ENSJJAG00000017139 #18	Ccdc83 (ENSJJAG00000017603) #19	ENSJJAG00000001614 #20	Eed (ENSJJAG00000016121) #21	Hikeshi (ENSJJAG00000012398) #22	ENSJJAG00000022293	Ccdc81 (ENSJJAG00000011496) #23	Me3 (ENSJJAG00000022815) #25	Prss23 (ENSJJAG00000010057) #28	Fzd4 (ENSJJAG00000008823) #29	Tmem135 (ENSJJAG00000013241) #30	Rab38 (ENSJJAG00000020660) #31	Ctsc (ENSJJAG00000010794) #32	Grm5 (ENSJJAG00000024148) #33	ENSJJAG00000003405 #33	Tyr (ENSJJAG00000005553) #35	Nox4 (ENSJJAG00000022117) #36	Folh1 (ENSJJAG00000021601)	ENSJJAG00000021619	ENSJJAG00000020270
Muroidea	ANCESTRAL SPECIES	12	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00990000214054	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT01100000263570.A	ENSGT01090000260024.A.a.b.a.a	ENSGT01050000244828.c.b.b.b.c.a.a.a
Muroidea_A	ANCESTRAL SPECIES		ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00990000214054	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT01100000263570.A	ENSGT01090000260024.A.a.b.a.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.c
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00990000214054	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT01100000263570.A	ENSGT01090000260024.A.a.b.a.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.c
Cricetidae_B	ANCESTRAL SPECIES	26	ENSGT00980000198692	ENSGT00940000158099.f	ENSGT00940000158099.e	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00990000214054	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.d.a.a	ENSGT01090000260024.A.a.b.a.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.c
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	9	Or13g1 (ENSMOCG00000006498)	Fam181b (ENSMOCG00000019765)	ENSMOCG00000013603	ENSMOCG00000012985	Prcp (ENSMOCG00000012404)	ENSMOCG00000009821	Pcf11 (ENSMOCG00000001560) #7	Ankrd42 (ENSMOCG00000000292) #8	Ccdc90b (ENSMOCG00000020349) #11	ENSMOCG00000020913 #13	ENSMOCG00000019058 #16	Ccdc89 (ENSMOCG00000008424) #17	ENSMOCG00000014020 #18	Picalm (ENSMOCG00000010921) #20	Eed (ENSMOCG00000000447) #21	ENSMOCG00000019586 #22	Ccdc81 (ENSMOCG00000007045) #23	Me3 (ENSMOCG00000005796) #25	Prss23 (ENSMOCG00000022033) #28	ENSMOCG00000007773	Tenm4 (ENSMOCG00000007967)	Nars2 (ENSMOCG00000004938)	Gab2 (ENSMOCG00000016973)	Usp35 (ENSMOCG00000015178)	Kctd21 (ENSMOCG00000009332)	Alg8 (ENSMOCG00000018035)	Ndufc2 (ENSMOCG00000014768)	Thrsp (ENSMOCG00000014398)	Ints4 (ENSMOCG00000015641)	Aamdc (ENSMOCG00000013242)	Rsf1 (ENSMOCG00000018606)
Prairie vole	MODERN SPECIES	8	Prcc (ENSMOCG00000015302)	Mrpl24 (ENSMOCG00000019591)	Rrnad1 (ENSMOCG00000016923)	Isg20l2 (ENSMOCG00000000875)	Crabp2 (ENSMOCG00000017322)	Nes (ENSMOCG00000013062)	Bcan (ENSMOCG00000000154)	Hapln2 (ENSMOCG00000014313)	ENSMOCG00000008875	Naxe (ENSMOCG00000016457)	ENSMOCG00000014279	Iqgap3 (ENSMOCG00000020658)	Mef2d (ENSMOCG00000003757)	ENSMOCG00000008030	Rhbg (ENSMOCG00000005326)	ENSMOCG00000022002 #22	Tsacc (ENSMOCG00000013419)	Cct3 (ENSMOCG00000010144)	Glmp (ENSMOCG00000009096)	Tmem79 (ENSMOCG00000017414)	Smg5 (ENSMOCG00000016590)	Paqr6 (ENSMOCG00000006437)	ENSMOCG00000019680	ENSMOCG00000018426	Slc25a44 (ENSMOCG00000014671)	Sema4a (ENSMOCG00000022467)	Lmna (ENSMOCG00000011854)	Mex3a (ENSMOCG00000017881)	Rab25 (ENSMOCG00000010953)	Lamtor2 (ENSMOCG00000018988)	ENSMOCG00000013140
Northern American deer mouse	MODERN SPECIES		P2ry2 (ENSPEMG00000031410)	Fchsd2 (ENSPEMG00000022517)	Atg16l2 (ENSPEMG00000021325)	Stard10 (ENSPEMG00000020876)	Arap1 (ENSPEMG00000021221)	ENSPEMG00000030063	Pde2a (ENSPEMG00000026748)	ENSPEMG00000029000	ENSPEMG00000025401	ENSPEMG00000019643 #15	Ccdc89 (ENSPEMG00000013266) #17	ENSPEMG00000019500 #18	ENSPEMG00000028604	Picalm (ENSPEMG00000020088) #20	Eed (ENSPEMG00000019315) #21	Hikeshi (ENSPEMG00000020488) #22	Ccdc81 (ENSPEMG00000017793) #23	Me3 (ENSPEMG00000001307) #25	ENSPEMG00000027884 #26	Prss23 (ENSPEMG00000015023) #28	Fzd4 (ENSPEMG00000000061) #29	Tmem135 (ENSPEMG00000009485) #30	ENSPEMG00000014375	Rab38 (ENSPEMG00000022645) #31	Ctsc (ENSPEMG00000023091) #32	Grm5 (ENSPEMG00000022095) #33	Tyr (ENSPEMG00000023104) #35	Nox4 (ENSPEMG00000021901) #36	Folh1 (ENSPEMG00000022051)	ENSPEMG00000025927	ENSPEMG00000027271
Cricetinae	ANCESTRAL SPECIES	15	ENSGT00940000158099.e	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT01050000244828.c.b.b.b.c.a.a.a.d.a.a.a	ENSGT01090000260086.E.b	ENSGT00940000162666	ENSGT01060000248581.C.a.a
Chinese hamster chok1gshd	MODERN SPECIES	101	Pcf11 (ENSCGRG00001014596) #7	Ankrd42 (ENSCGRG00001009333) #8	Ccdc90b (ENSCGRG00001017562) #11	ENSCGRG00001006228 #13	ENSCGRG00001004849 #13	ENSCGRG00001020141	Tmem126b (ENSCGRG00001018676) #14	ENSCGRG00001000040 #15	Crebzf (ENSCGRG00001009481) #16	Ccdc89 (ENSCGRG00001000722) #17	ENSCGRG00001008518 #18	Ccdc83 (ENSCGRG00001016931) #19	ENSCGRG00001005565	Picalm (ENSCGRG00001023935) #20	Eed (ENSCGRG00001002220) #21	Hikeshi (ENSCGRG00001021205) #22	Ccdc81 (ENSCGRG00001021860) #23	Me3 (ENSCGRG00001000087) #25	Prss23 (ENSCGRG00001008698) #28	Fzd4 (ENSCGRG00001017396) #29	Tmem135 (ENSCGRG00001023218) #30	Rab38 (ENSCGRG00001014873) #31	Ctsc (ENSCGRG00001006267) #32	Grm5 (ENSCGRG00001009560) #33	Tyr (ENSCGRG00001019343) #35	Nox4 (ENSCGRG00001000979) #36	Folh1 (ENSCGRG00001000536)	ENSCGRG00001012337	ENSCGRG00001014707	ENSCGRG00001011155	ENSCGRG00001000891
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	476																ENSMAUG00000015923 #22
Golden Hamster	MODERN SPECIES	660	Prcp (ENSMAUG00000018982)	Rab30 (ENSMAUG00000008179)	Pcf11 (ENSMAUG00000021407) #7	Ankrd42 (ENSMAUG00000015024) #8	Ccdc90b (ENSMAUG00000021266) #11	Dlg2 (ENSMAUG00000012498) #13	Tmem126b (ENSMAUG00000014289) #14	Tmem126a (ENSMAUG00000016002) #15	Crebzf (ENSMAUG00000010774) #16	Ccdc89 (ENSMAUG00000005748) #17	ENSMAUG00000017590 #18	ENSMAUG00000000412 #18	Ccdc83 (ENSMAUG00000008122) #19	Picalm (ENSMAUG00000011448) #20	ENSMAUG00000019033 #21	ENSMAUG00000014854 #22	Ccdc81 (ENSMAUG00000001944) #23	ENSMAUG00000007180 #25	ENSMAUG00000012259 #25	Prss23 (ENSMAUG00000010049) #28
Murinae	ANCESTRAL SPECIES		ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00950000183069.b.b.a.b.c.b.a.b.e	ENSGT01030000234598.b.a.b.k.a	ENSGT01100000263570.A.m.b.b	ENSGT01050000244828.c.b.b.b.c.a.a.a.c.b
Rat	MODERN SPECIES		Prcp (ENSRNOG00000010630)	Ddias (ENSRNOG00000022521)	Rab30 (ENSRNOG00000010224)	Pcf11 (ENSRNOG00000009891) #7	Ankrd42 (ENSRNOG00000009664) #8	Ccdc90b (ENSRNOG00000009462) #11	Dlg2 (ENSRNOG00000022635) #13	Tmem126b (ENSRNOG00000022732) #14	Tmem126a (ENSRNOG00000022748) #15	Crebzf (ENSRNOG00000018987) #16	LOC100911776 (ENSRNOG00000048071) #17	Sytl2 (ENSRNOG00000030776) #18	Ccdc83 (ENSRNOG00000052220) #19	Picalm (ENSRNOG00000018322) #20	Eed (ENSRNOG00000017509) #21	Hikeshi (ENSRNOG00000017383) #22	LOC102549852 (ENSRNOG00000022941)	Ccdc81 (ENSRNOG00000033733) #23	Me3 (ENSRNOG00000017311) #25	Prss23 (ENSRNOG00000017307) #28	Fzd4 (ENSRNOG00000063590) #29	Tmem135 (ENSRNOG00000016815) #30	Rab38 (ENSRNOG00000016769) #31	Ctsc (ENSRNOG00000016496) #32	Grm5 (ENSRNOG00000016429) #33	Tyr (ENSRNOG00000016421) #35	Nox4 (ENSRNOG00000013925) #36	ENSRNOG00000068544	Vom2r-ps67 (ENSRNOG00000033507)	Folh1 (ENSRNOG00000013770)	Or14c39 (ENSRNOG00000062805)
Mus	ANCESTRAL SPECIES		ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00900000143322	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a	ENSGT01030000234598.b.a.b.k.a	ENSGT01100000263570.A.m.b.b.b	ENSGT01100000263570.A.m.a.b
Shrew mouse	MODERN SPECIES		Ddias (MGP_PahariEiJ_G0013213)	Rab30 (MGP_PahariEiJ_G0013212)	Pcf11 (MGP_PahariEiJ_G0013211) #7	Ankrd42 (MGP_PahariEiJ_G0013210) #8	Ccdc90b (MGP_PahariEiJ_G0013209) #11	Dlg2 (MGP_PahariEiJ_G0013208) #13	MGP_PahariEiJ_G0013207 #14	MGP_PahariEiJ_G0013206 #15	Crebzf (MGP_PahariEiJ_G0013205) #16	Ccdc89 (MGP_PahariEiJ_G0013204) #17	MGP_PahariEiJ_G0013203 #18	Ccdc83 (MGP_PahariEiJ_G0013202) #19	Picalm (MGP_PahariEiJ_G0013201) #20	MGP_PahariEiJ_G0013200	Eed (MGP_PahariEiJ_G0013199) #21	Hikeshi (MGP_PahariEiJ_G0013198) #22	Ccdc81 (MGP_PahariEiJ_G0013197) #23	MGP_PahariEiJ_G0013196 #25	MGP_PahariEiJ_G0013195 #26	Prss23 (MGP_PahariEiJ_G0013194) #28	Fzd4 (MGP_PahariEiJ_G0013193) #29	Tmem135 (MGP_PahariEiJ_G0013192) #30	Rab38 (MGP_PahariEiJ_G0013191) #31	Ctsc (MGP_PahariEiJ_G0013190) #32	Grm5 (MGP_PahariEiJ_G0013189) #33	Tyr (MGP_PahariEiJ_G0013188) #35	Nox4 (MGP_PahariEiJ_G0013187) #36	MGP_PahariEiJ_G0013186	MGP_PahariEiJ_G0013185	MGP_PahariEiJ_G0013184	Folh1 (MGP_PahariEiJ_G0013183)
Mus_A	ANCESTRAL SPECIES	1	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00900000143322	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.b	ENSGT01030000234598.b.a.b.k.a	ENSGT01100000263570.A.m.b.b.b
Ryukyu mouse	MODERN SPECIES	16	Ddias (MGP_CAROLIEiJ_G0029993)	Rab30 (MGP_CAROLIEiJ_G0029992)	Pcf11 (MGP_CAROLIEiJ_G0029991) #7	Ankrd42 (MGP_CAROLIEiJ_G0029990) #8	Ccdc90b (MGP_CAROLIEiJ_G0029989) #11	Dlg2 (MGP_CAROLIEiJ_G0029988) #13	Tmem126b (MGP_CAROLIEiJ_G0029987) #14	MGP_CAROLIEiJ_G0029986 #15	Crebzf (MGP_CAROLIEiJ_G0029985) #16	Ccdc89 (MGP_CAROLIEiJ_G0029984) #17	MGP_CAROLIEiJ_G0029983 #18	Ccdc83 (MGP_CAROLIEiJ_G0029982) #19	Picalm (MGP_CAROLIEiJ_G0029981) #20	MGP_CAROLIEiJ_G0029980	Eed (MGP_CAROLIEiJ_G0029979) #21	Hikeshi (MGP_CAROLIEiJ_G0029978) #22	Ccdc81 (MGP_CAROLIEiJ_G0029977) #23	Me3 (MGP_CAROLIEiJ_G0029976) #25	MGP_CAROLIEiJ_G0029975 #26	Prss23 (MGP_CAROLIEiJ_G0029974) #28	Fzd4 (MGP_CAROLIEiJ_G0029973) #29	Tmem135 (MGP_CAROLIEiJ_G0029972) #30	Rab38 (MGP_CAROLIEiJ_G0029971) #31	Ctsc (MGP_CAROLIEiJ_G0029970) #32	Grm5 (MGP_CAROLIEiJ_G0029969) #33	Tyr (MGP_CAROLIEiJ_G0029968) #35	Nox4 (MGP_CAROLIEiJ_G0029967) #36	MGP_CAROLIEiJ_G0029966	Folh1 (MGP_CAROLIEiJ_G0029965)	Or14c39 (MGP_CAROLIEiJ_G0029964)	Or14a256 (MGP_CAROLIEiJ_G0029963)
Mus_B	ANCESTRAL SPECIES		ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00900000143322	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a.a	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a.b	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.b	ENSGT01030000234598.b.a.b.k.a
Mouse	MODERN SPECIES	16	Prcp (ENSMUSG00000061119)	Ddias (ENSMUSG00000030641)	Rab30 (ENSMUSG00000030643)	Pcf11 (ENSMUSG00000041328) #7	Ankrd42 (ENSMUSG00000041343) #8	Ccdc90b (ENSMUSG00000030613) #11	Dlg2 (ENSMUSG00000052572) #13	Tmem126b (ENSMUSG00000030614) #14	Tmem126a (ENSMUSG00000030615) #15	Crebzf (ENSMUSG00000051451) #16	Ccdc89 (ENSMUSG00000044362) #17	Sytl2 (ENSMUSG00000030616) #18	Ccdc83 (ENSMUSG00000030617) #19	Picalm (ENSMUSG00000039361) #20	Eed (ENSMUSG00000030619) #21	Hikeshi (ENSMUSG00000062797) #22	Ccdc81 (ENSMUSG00000039391) #23	Me3 (ENSMUSG00000030621) #25	Prss23 (ENSMUSG00000039405) #28	Fzd4 (ENSMUSG00000049791) #29	Tmem135 (ENSMUSG00000039428) #30	Rab38 (ENSMUSG00000030559) #31	Ctsc (ENSMUSG00000030560) #32	Grm5 (ENSMUSG00000049583) #33	Tyr (ENSMUSG00000004651) #35	Nox4 (ENSMUSG00000030562) #36	Vmn2r79 (ENSMUSG00000090362)	Vmn2r78 (ENSMUSG00000091962)	Vmn2r77 (ENSMUSG00000090949)	Folh1 (ENSMUSG00000001773)	Or14c39 (ENSMUSG00000060688)
Mus_C	ANCESTRAL SPECIES	13	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00900000143322	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a.a	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.a.b	ENSGT00950000183069.b.b.a.b.c.b.a.b.e.b	ENSGT01030000234598.b.a.b.k.a
spretus	MODERN SPECIES	16	Ddias (MGP_SPRETEiJ_G0031103)	Rab30 (MGP_SPRETEiJ_G0031102)	Pcf11 (MGP_SPRETEiJ_G0031101) #7	Ankrd42 (MGP_SPRETEiJ_G0031100) #8	Ccdc90b (MGP_SPRETEiJ_G0031099) #11	Dlg2 (MGP_SPRETEiJ_G0031098) #13	Tmem126b (MGP_SPRETEiJ_G0031097) #14	Tmem126a (MGP_SPRETEiJ_G0031096) #15	Crebzf (MGP_SPRETEiJ_G0031095) #16	Ccdc89 (MGP_SPRETEiJ_G0031094) #17	MGP_SPRETEiJ_G0031093 #18	Ccdc83 (MGP_SPRETEiJ_G0031092) #19	Picalm (MGP_SPRETEiJ_G0031091) #20	MGP_SPRETEiJ_G0031090	Eed (MGP_SPRETEiJ_G0031089) #21	Hikeshi (MGP_SPRETEiJ_G0031088) #22	Ccdc81 (MGP_SPRETEiJ_G0031087) #23	Me3 (MGP_SPRETEiJ_G0031086) #25	MGP_SPRETEiJ_G0031085 #26	Prss23 (MGP_SPRETEiJ_G0031084) #28	Fzd4 (MGP_SPRETEiJ_G0031083) #29	Tmem135 (MGP_SPRETEiJ_G0031082) #30	Rab38 (MGP_SPRETEiJ_G0031081) #31	Ctsc (MGP_SPRETEiJ_G0031080) #32	Grm5 (MGP_SPRETEiJ_G0031079) #33	Tyr (MGP_SPRETEiJ_G0031078) #35	Nox4 (MGP_SPRETEiJ_G0031077) #36	MGP_SPRETEiJ_G0031076	MGP_SPRETEiJ_G0031075	Folh1 (MGP_SPRETEiJ_G0031074)	MGP_SPRETEiJ_G0031073
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	2267															ENSMSIG00000013158	ENSMSIG00000013220 #22	ENSMSIG00000013233
Steppe mouse	MODERN SPECIES	3267								Tmem126a (ENSMSIG00000004649) #15	Crebzf (ENSMSIG00000004643) #16	Ccdc89 (ENSMSIG00000004633) #17	ENSMSIG00000004302 #18	Ccdc83 (ENSMSIG00000004142) #19	Picalm (ENSMSIG00000002381) #20	ENSMSIG00000002305	Eed (ENSMSIG00000002163) #21	Hikeshi (ENSMSIG00000002062) #22	Ccdc81 (ENSMSIG00000002033) #23	Me3 (ENSMSIG00000001983) #25	Prss23 (ENSMSIG00000001970) #28	Fzd4 (ENSMSIG00000001959) #29	Tmem135 (ENSMSIG00000001854) #30	Rab38 (ENSMSIG00000001797) #31	Ctsc (ENSMSIG00000001732) #32	Grm5 (ENSMSIG00000001662) #33	Tyr (ENSMSIG00000001626) #35	ENSMSIG00000001617	ENSMSIG00000001407 #36	ENSMSIG00000001350	Vmn2r78 (ENSMSIG00000001291)	Vmn2r77 (ENSMSIG00000001225)	Folh1 (ENSMSIG00000001146)
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	887	Ppp1r16a (ENSNGAG00000015151)	Gpt (ENSNGAG00000022442)	Mfsd3 (ENSNGAG00000021890)	Recql4 (ENSNGAG00000004346)	Lrrc14 (ENSNGAG00000021854)	Lrrc24 (ENSNGAG00000001077)	C030006K11Rik (ENSNGAG00000020317)	Arhgap39 (ENSNGAG00000012243)	ENSNGAG00000022492	ENSNGAG00000019622	Zfp251 (ENSNGAG00000018267)	ENSNGAG00000015607	ENSNGAG00000010510	Commd5 (ENSNGAG00000005505)	Rpl8 (ENSNGAG00000002558)	ENSNGAG00000023606 #22	Zfp647 (ENSNGAG00000024224)	ENSNGAG00000018948	ENSNGAG00000016239	1110038F14Rik (ENSNGAG00000015370)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1254	Prcp (ENSNGAG00000017611)	Ddias (ENSNGAG00000019404)	Rab30 (ENSNGAG00000018930)	Pcf11 (ENSNGAG00000007823) #7	Ankrd42 (ENSNGAG00000001127) #8	Ccdc90b (ENSNGAG00000018955) #11	Dlg2 (ENSNGAG00000013593) #13	Tmem126a (ENSNGAG00000000853) #15	ENSNGAG00000016917 #14	Crebzf (ENSNGAG00000013879) #16	Ccdc89 (ENSNGAG00000017955) #17	ENSNGAG00000007001 #18	Ccdc83 (ENSNGAG00000002487) #19	Picalm (ENSNGAG00000011828) #20	Eed (ENSNGAG00000020336) #21	Hikeshi (ENSNGAG00000017432) #22	Ccdc81 (ENSNGAG00000011335) #23	ENSNGAG00000000347	Me3 (ENSNGAG00000020611) #25	Prss23 (ENSNGAG00000014789) #28	Fzd4 (ENSNGAG00000011833) #29	ENSNGAG00000015588 #30	Rab38 (ENSNGAG00000012189) #31	Ctsc (ENSNGAG00000004920) #32	Grm5 (ENSNGAG00000000178) #33	Tyr (ENSNGAG00000013719) #35
Lagomorpha	ANCESTRAL SPECIES	5	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981
Rabbit	MODERN SPECIES		ENSOCUG00000030982	CCDC90B (ENSOCUG00000026829) #11	ANKRD42 (ENSOCUG00000004475) #8	ENSOCUG00000035571	ENSOCUG00000038610	DLG2 (ENSOCUG00000010534) #13	ENSOCUG00000016529 #14	ENSOCUG00000016534 #15	CREBZF (ENSOCUG00000016544) #16	CCDC89 (ENSOCUG00000016547) #17	SYTL2 (ENSOCUG00000013753) #18	ENSOCUG00000033217	CCDC83 (ENSOCUG00000009770) #19	PICALM (ENSOCUG00000023809) #20	EED (ENSOCUG00000021263) #21	HIKESHI (ENSOCUG00000013108) #22	ENSOCUG00000037210	CCDC81 (ENSOCUG00000007318) #23	ENSOCUG00000027723 #24	ME3 (ENSOCUG00000012005) #25	ENSOCUG00000031072 #26	ENSOCUG00000036239	PRSS23 (ENSOCUG00000004137) #28	FZD4 (ENSOCUG00000006445) #29	TMEM135 (ENSOCUG00000000713) #30	ENSOCUG00000032429	ENSOCUG00000014522 #31	CTSC (ENSOCUG00000014527) #32	ENSOCUG00000012817 #33	ENSOCUG00000029319 #33	TYR (ENSOCUG00000009965) #35
Pika	MODERN SPECIES	3533															ENSOPRG00000013844 #21	HIKESHI (ENSOPRG00000013869) #22	CCDC81 (ENSOPRG00000013884) #23	ME3 (ENSOPRG00000013901) #25	PRSS23 (ENSOPRG00000013925) #28	ENSOPRG00000013932 #29
Tree shrew	MODERN SPECIES	5448															EED (ENSTBEG00000008428) #21	ENSTBEG00000009192 #22
Primates	ANCESTRAL SPECIES		ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000163419
Strepsirrhini	ANCESTRAL SPECIES	6	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b.`b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a.`b #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981
Lemuriformes	ANCESTRAL SPECIES	13	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b.`b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a.`b #15	ENSGT00390000016589 #16	ENSGT00910000148212	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000160005.A.l	ENSGT00940000163440	ENSGT00940000160005.A.k	ENSGT00940000163858
Mouse lemur	MODERN SPECIES	27	USP35 (ENSMICG00000038576)	KCTD21 (ENSMICG00000046215)	ALG8 (ENSMICG00000015000)	NDUFC2 (ENSMICG00000041506)	KCTD14 (ENSMICG00000044183)	ENSMICG00000043874	ENSMICG00000027485	ENSMICG00000009022 #13	TMEM126B (ENSMICG00000029604) #14	TMEM126A (ENSMICG00000005510) #15	CREBZF (ENSMICG00000033683) #16	SYTL2 (ENSMICG00000005519) #18	CCDC83 (ENSMICG00000017254) #19	PICALM (ENSMICG00000017261) #20	ENSMICG00000010728 #21	HIKESHI (ENSMICG00000000946) #22	CCDC81 (ENSMICG00000000948) #23	ENSMICG00000037743	ME3 (ENSMICG00000000951) #25	PRSS23 (ENSMICG00000026361) #28	FZD4 (ENSMICG00000012533) #29	TMEM135 (ENSMICG00000013387) #30	RAB38 (ENSMICG00000028169) #31	CTSC (ENSMICG00000002445) #32	GRM5 (ENSMICG00000002451) #33	TYR (ENSMICG00000037850) #35	NOX4 (ENSMICG00000014398) #36	ENSMICG00000042150	ENSMICG00000013580	NAALAD2 (ENSMICG00000015630)	ENSMICG00000015646
Lemuriformes_a	ANCESTRAL SPECIES	133	ENSGT00940000165087	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b.`b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a.`b #15	ENSGT00910000148212	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163858	ENSGT00940000160005.A.k	ENSGT00940000163440	ENSGT00940000160005.A.l
Greater bamboo lemur	MODERN SPECIES	625		ENSPSMG00000007219	ENSPSMG00000007223	TMEM126B (ENSPSMG00000007232) #14	ENSPSMG00000007247 #15	ENSPSMG00000007260	CCDC89 (ENSPSMG00000007263) #17	SYTL2 (ENSPSMG00000007523) #18	CCDC83 (ENSPSMG00000007641) #19	ENSPSMG00000007653	PICALM (ENSPSMG00000008098) #20	ENSPSMG00000008423	ENSPSMG00000008429	ENSPSMG00000008449	EED (ENSPSMG00000008532) #21	HIKESHI (ENSPSMG00000008554) #22	CCDC81 (ENSPSMG00000008616) #23	ME3 (ENSPSMG00000008707) #25	PRSS23 (ENSPSMG00000008732) #28	FZD4 (ENSPSMG00000008734) #29	TMEM135 (ENSPSMG00000008862) #30	RAB38 (ENSPSMG00000008937) #31	CTSC (ENSPSMG00000008979) #32	GRM5 (ENSPSMG00000009090) #33	TYR (ENSPSMG00000009145) #35	NOX4 (ENSPSMG00000009300) #36	FOLH1 (ENSPSMG00000009438)	ENSPSMG00000009461	ENSPSMG00000009467	ENSPSMG00000009478	ENSPSMG00000009540
Coquerels sifaka	MODERN SPECIES	237	PRCP (ENSPCOG00000027887)	ENSPCOG00000027868	RAB30 (ENSPCOG00000017316)	PCF11 (ENSPCOG00000000051) #7	ANKRD42 (ENSPCOG00000026124) #8	CCDC90B (ENSPCOG00000021879) #11	DLG2 (ENSPCOG00000019969) #13	TMEM126B (ENSPCOG00000020968) #14	TMEM126A (ENSPCOG00000020359) #15	ENSPCOG00000015922	SYTL2 (ENSPCOG00000009450) #18	CCDC83 (ENSPCOG00000008593) #19	PICALM (ENSPCOG00000026679) #20	ENSPCOG00000024002	EED (ENSPCOG00000022510) #21	HIKESHI (ENSPCOG00000028239) #22	CCDC81 (ENSPCOG00000024443) #23	ME3 (ENSPCOG00000027098) #25	FZD4 (ENSPCOG00000018933) #29	TMEM135 (ENSPCOG00000015029) #30	RAB38 (ENSPCOG00000020800) #31	CTSC (ENSPCOG00000001859) #32	ENSPCOG00000024115	GRM5 (ENSPCOG00000028721) #33	TYR (ENSPCOG00000016235) #35	NOX4 (ENSPCOG00000017092) #36	FOLH1 (ENSPCOG00000018014)	ENSPCOG00000017327	ENSPCOG00000024227	ENSPCOG00000023420
Bushbaby	MODERN SPECIES	116	PCF11 (ENSOGAG00000001905) #7	ANKRD42 (ENSOGAG00000001906) #8	CCDC90B (ENSOGAG00000006817) #11	ENSOGAG00000026562	DLG2 (ENSOGAG00000010597) #13	ENSOGAG00000029637	ENSOGAG00000027183	ENSOGAG00000005403 #15	CREBZF (ENSOGAG00000027039) #16	CCDC89 (ENSOGAG00000005407) #17	ENSOGAG00000030902 #18	CCDC83 (ENSOGAG00000013946) #19	PICALM (ENSOGAG00000013950) #20	ENSOGAG00000029699	EED (ENSOGAG00000025611) #21	HIKESHI (ENSOGAG00000013958) #22	CCDC81 (ENSOGAG00000013961) #23	ENSOGAG00000025640 #24	ME3 (ENSOGAG00000013965) #25	PRSS23 (ENSOGAG00000011479) #28	ENSOGAG00000032179	FZD4 (ENSOGAG00000011478) #29	TMEM135 (ENSOGAG00000013804) #30	ENSOGAG00000027554	ENSOGAG00000027235	RAB38 (ENSOGAG00000004961) #31	CTSC (ENSOGAG00000009168) #32	GRM5 (ENSOGAG00000003814) #33	ENSOGAG00000024204 #35	NOX4 (ENSOGAG00000012261) #36	FOLH1 (ENSOGAG00000002014)
Haplorrhini	ANCESTRAL SPECIES		ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000163419
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	1516													CCDC83 (ENSTSYG00000008696) #19	PICALM (ENSTSYG00000004088) #20	EED (ENSTSYG00000005232) #21	HIKESHI (ENSTSYG00000003299) #22	CCDC81 (ENSTSYG00000007216) #23	ENSTSYG00000028689 #24
Tarsier	MODERN SPECIES	3354													RPAP3 (ENSTSYG00000006882)	ENDOU (ENSTSYG00000001211)	RAPGEF3 (ENSTSYG00000006424)	ENSTSYG00000029114 #22	SLC48A1 (ENSTSYG00000034171)	HDAC7 (ENSTSYG00000033525)
Simiiformes	ANCESTRAL SPECIES		ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00860000135923	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163778	ENSGT00940000160005.A
Platyrrhini	ANCESTRAL SPECIES	3	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00860000135923	ENSGT00940000155156.b #13	ENSGT00940000154847.b	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00910000148212	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00940000157141 #29	ENSGT00390000008820.e.b.b	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163778	ENSGT00940000160005.A.i	ENSGT00940000163440	ENSGT00940000163419.j
Mas night monkey	MODERN SPECIES	575	PCF11 (ENSANAG00000037724) #7	ENSANAG00000024905 #8	ENSANAG00000029298 #11	DLG2 (ENSANAG00000031143) #13	ENSANAG00000032550	ENSANAG00000037228	ENSANAG00000037632	ENSANAG00000029976	TMEM126B (ENSANAG00000025056) #14	ENSANAG00000026301 #15	CREBZF (ENSANAG00000034171) #16	SYTL2 (ENSANAG00000028146) #18	CCDC83 (ENSANAG00000032623) #19	PICALM (ENSANAG00000019901) #20	EED (ENSANAG00000011962) #21	HIKESHI (ENSANAG00000022595) #22	ENSANAG00000038314	CCDC81 (ENSANAG00000036233) #23	ME3 (ENSANAG00000036581) #25	FZD4 (ENSANAG00000020728) #29	ENSANAG00000033368	TMEM135 (ENSANAG00000038000) #30
Cebidae	ANCESTRAL SPECIES		ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00910000148212	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00940000157141 #29	ENSGT00390000008820.e.b.b	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163778	ENSGT00940000160005.A.i	ENSGT00940000163440	ENSGT00940000163419.j
Marmoset	MODERN SPECIES	2	ENSCJAG00000074858	ENSCJAG00000036997	ENSCJAG00000082882	ENSCJAG00000085884	ENSCJAG00000070224	DLG2 (ENSCJAG00000014492) #13	TMEM126B (ENSCJAG00000014472) #14	ENSCJAG00000014466 #15	ENSCJAG00000043995	CCDC89 (ENSCJAG00000014446) #17	SYTL2 (ENSCJAG00000014359) #18	CCDC83 (ENSCJAG00000014339) #19	ENSCJAG00000086029	PICALM (ENSCJAG00000014262) #20	EED (ENSCJAG00000014209) #21	HIKESHI (ENSCJAG00000041472) #22	CCDC81 (ENSCJAG00000012092) #23	ME3 (ENSCJAG00000000649) #25	ENSCJAG00000079494	FZD4 (ENSCJAG00000000657) #29	ENSCJAG00000076219	ENSCJAG00000086105	ENSCJAG00000086260	TMEM135 (ENSCJAG00000000661) #30	ENSCJAG00000055696	ENSCJAG00000080496	RAB38 (ENSCJAG00000000671) #31	CTSC (ENSCJAG00000000679) #32	ENSCJAG00000032975	GRM5 (ENSCJAG00000000695) #33	TYR (ENSCJAG00000000698) #35
Cebidae_a	ANCESTRAL SPECIES	73	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00860000135923	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00940000157141 #29	ENSGT00390000008820.e.b.b	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163778	ENSGT00940000160005.A.i	ENSGT00940000163440	ENSGT00940000163419.j
Capuchin	MODERN SPECIES	442								TMEM126B (ENSCCAG00000030490) #14	ENSCCAG00000016707 #15	CREBZF (ENSCCAG00000018390) #16	SYTL2 (ENSCCAG00000027399) #18	CCDC83 (ENSCCAG00000036956) #19	ENSCCAG00000035690	PICALM (ENSCCAG00000032962) #20	EED (ENSCCAG00000010220) #21	HIKESHI (ENSCCAG00000031050) #22	CCDC81 (ENSCCAG00000035713) #23	ME3 (ENSCCAG00000023036) #25	FZD4 (ENSCCAG00000018431) #29	ENSCCAG00000023395	TMEM135 (ENSCCAG00000015547) #30
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	51	ENSSBOG00000026951	ENSSBOG00000036210	BCLAF3 (ENSSBOG00000031024)	MAP7D2 (ENSSBOG00000029797)	ENSSBOG00000031558	ENSSBOG00000029635	RPS6KA3 (ENSSBOG00000034830)	ENSSBOG00000018382	CNKSR2 (ENSSBOG00000029741)	SMPX (ENSSBOG00000033495)	MBTPS2 (ENSSBOG00000029363)	SMS (ENSSBOG00000024222)	ENSSBOG00000000154	PHEX (ENSSBOG00000035899)	ENSSBOG00000022205	ENSSBOG00000017959 #22	PTCHD1 (ENSSBOG00000022861)	PRDX4 (ENSSBOG00000026851)	ACOT9 (ENSSBOG00000035947)	SAT1 (ENSSBOG00000023952)	ENSSBOG00000023578	CXorf58 (ENSSBOG00000023363)	KLHL15 (ENSSBOG00000011468)	EIF2S3 (ENSSBOG00000022630)	ENSSBOG00000006323	ZFX (ENSSBOG00000031673)	PDK3 (ENSSBOG00000032538)	PCYT1B (ENSSBOG00000023731)	POLA1 (ENSSBOG00000019711)	ARX (ENSSBOG00000022256)	ENSSBOG00000035884
Bolivian squirrel monkey	MODERN SPECIES	111	ANKRD42 (ENSSBOG00000029776) #8	CCDC90B (ENSSBOG00000031087) #11	ENSSBOG00000032196	ENSSBOG00000030642	DLG2 (ENSSBOG00000034048) #13	ENSSBOG00000002491	TMEM126B (ENSSBOG00000029314) #14	ENSSBOG00000031600 #15	ENSSBOG00000031353	CREBZF (ENSSBOG00000021121) #16	SYTL2 (ENSSBOG00000022671) #18	CCDC83 (ENSSBOG00000024146) #19	ENSSBOG00000023637	PICALM (ENSSBOG00000022605) #20	EED (ENSSBOG00000020361) #21	ENSSBOG00000035641 #22	ENSSBOG00000026631	CCDC81 (ENSSBOG00000029201) #23	ME3 (ENSSBOG00000022193) #25	ENSSBOG00000026687	FZD4 (ENSSBOG00000026619) #29	TMEM135 (ENSSBOG00000020475) #30	RAB38 (ENSSBOG00000033877) #31	CTSC (ENSSBOG00000031425) #32	GRM5 (ENSSBOG00000029620) #33	ENSSBOG00000025801	TYR (ENSSBOG00000034806) #35	NOX4 (ENSSBOG00000031083) #36	FOLH1 (ENSSBOG00000030773)	TRIM77 (ENSSBOG00000029725)
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00950000182971.B.b.c.a.a	ENSGT00940000155453 #11	ENSGT00860000135923	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00550000074935.v	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00910000147856	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00950000185226
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00950000182971.B.b.c.a.a	ENSGT00940000155453 #11	ENSGT00860000135923	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00550000074935.v	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT00910000147216	ENSGT01030000234595.A.a #33	ENSGT00910000147856	ENSGT00940000155336 #35	ENSGT00940000159621 #36
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00950000182971.B.b.c.a.a	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00550000074935.v	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT00910000147216	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a
Vervet Monkey	MODERN SPECIES		DDIAS (ENSCSAG00000003710)	RAB30 (ENSCSAG00000003704)	PCF11 (ENSCSAG00000003702) #7	ANKRD42 (ENSCSAG00000003699) #8	CCDC90B (ENSCSAG00000003693) #11	DLG2 (ENSCSAG00000003691) #13	TMEM126B (ENSCSAG00000003685) #14	TMEM126A (ENSCSAG00000003683) #15	CREBZF (ENSCSAG00000000613) #16	CCDC89 (ENSCSAG00000000612) #17	SYTL2 (ENSCSAG00000003677) #18	CCDC83 (ENSCSAG00000003666) #19	ENSCSAG00000000611	PICALM (ENSCSAG00000003661) #20	EED (ENSCSAG00000003653) #21	HIKESHI (ENSCSAG00000003649) #22	CCDC81 (ENSCSAG00000003644) #23	ME3 (ENSCSAG00000003640) #25	PRSS23 (ENSCSAG00000000610) #28	FZD4 (ENSCSAG00000003633) #29	TMEM135 (ENSCSAG00000003625) #30	RAB38 (ENSCSAG00000003620) #31	CTSC (ENSCSAG00000003618) #32	GRM5 (ENSCSAG00000003616) #33	TYR (ENSCSAG00000003613) #35	NOX4 (ENSCSAG00000003604) #36	FOLH1 (ENSCSAG00000003592)	TRIM77 (ENSCSAG00000003587)	ENSCSAG00000003583	ENSCSAG00000003576	ENSCSAG00000003574
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00940000154216.a #8	ENSGT00950000182971.B.b.c.a.a	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00940000154847.b	ENSGT00940000153402.c.a.a.b.d	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00550000074935.v	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT00910000147216	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a
Macaca	ANCESTRAL SPECIES	2	ENSGT00950000182971.B.b.c.a.a	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00940000154847.b	ENSGT00940000153402.c.a.a.b.d	ENSGT00520000055616.b.e #14	ENSGT00520000055616.b.f #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00550000074935.v	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT00910000147216	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163778
Pig-tailed macaque	MODERN SPECIES	423	ANKRD42 (ENSMNEG00000044572) #8	ENSMNEG00000042667	CCDC90B (ENSMNEG00000040708) #11	DLG2 (ENSMNEG00000032861) #13	ENSMNEG00000035794	ENSMNEG00000041407	TMEM126B (ENSMNEG00000038548) #14	TMEM126A (ENSMNEG00000033570) #15	CREBZF (ENSMNEG00000038550) #16	CCDC89 (ENSMNEG00000023949) #17	SYTL2 (ENSMNEG00000012179) #18	CCDC83 (ENSMNEG00000042390) #19	PICALM (ENSMNEG00000029285) #20	ENSMNEG00000042451	EED (ENSMNEG00000027523) #21	HIKESHI (ENSMNEG00000035878) #22	CCDC81 (ENSMNEG00000033044) #23	ME3 (ENSMNEG00000015271) #25	ENSMNEG00000038710	FZD4 (ENSMNEG00000029276) #29	TMEM135 (ENSMNEG00000045398) #30	ENSMNEG00000030149	ENSMNEG00000043896	RAB38 (ENSMNEG00000027238) #31	CTSC (ENSMNEG00000030747) #32	ENSMNEG00000018809	GRM5 (ENSMNEG00000034358) #33	TYR (ENSMNEG00000036611) #35	NOX4 (ENSMNEG00000044084) #36	FOLH1 (ENSMNEG00000038167)	TRIM77 (ENSMNEG00000034320)
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00950000182971.B.b.c.a.a	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01100000263493.a.b.a.a.a.a.a.a.a.b.a.a.b.a.a.a	ENSGT00520000055616.b.f #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT01100000263509.a.a.b.a.a.b	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163778	ENSGT00940000163440.b.a	ENSGT00940000163419.g	ENSGT00940000163440.b.b
Rhesus	MODERN SPECIES	5	DLG2 (ENSMMUG00000007921) #13	ENSMMUG00000061300	ENSMMUG00000060971	ENSMMUG00000051769	ENSMMUG00000050245	ENSMMUG00000050119	TMEM126B (ENSMMUG00000016540) #14	TMEM126A (ENSMMUG00000057373) #15	CREBZF (ENSMMUG00000016543) #16	CCDC89 (ENSMMUG00000063415) #17	SYTL2 (ENSMMUG00000012449) #18	ENSMMUG00000058091	CCDC83 (ENSMMUG00000019617) #19	PICALM (ENSMMUG00000019618) #20	EED (ENSMMUG00000019621) #21	HIKESHI (ENSMMUG00000017730) #22	CCDC81 (ENSMMUG00000013045) #23	ME3 (ENSMMUG00000013055) #25	PRSS23 (ENSMMUG00000003717) #28	FZD4 (ENSMMUG00000004048) #29	TMEM135 (ENSMMUG00000010229) #30	RAB38 (ENSMMUG00000016006) #31	CTSC (ENSMMUG00000022139) #32	GRM5 (ENSMMUG00000010184) #33	ENSMMUG00000051617	TYR (ENSMMUG00000011115) #35	NOX4 (ENSMMUG00000011116) #36	FOLH1 (ENSMMUG00000012596)	TRIM77 (ENSMMUG00000048340)	ENSMMUG00000051536	ENSMMUG00000064584
Crab-eating macaque	MODERN SPECIES	5	ENSMFAG00000056564	ENSMFAG00000046206	ENSMFAG00000059686	ENSMFAG00000052763	ENSMFAG00000037137 #14	TMEM126A (ENSMFAG00000000919) #15	ENSMFAG00000059074	CCDC89 (ENSMFAG00000015719) #17	SYTL2 (ENSMFAG00000032887) #18	ENSMFAG00000056194	CCDC83 (ENSMFAG00000002840) #19	PICALM (ENSMFAG00000002978) #20	ENSMFAG00000059633	ENSMFAG00000049118	EED (ENSMFAG00000045418) #21	HIKESHI (ENSMFAG00000035626) #22	CCDC81 (ENSMFAG00000003801) #23	ME3 (ENSMFAG00000037695) #25	PRSS23 (ENSMFAG00000036910) #28	FZD4 (ENSMFAG00000034431) #29	TMEM135 (ENSMFAG00000016730) #30	RAB38 (ENSMFAG00000044903) #31	ENSMFAG00000049993	CTSC (ENSMFAG00000031718) #32	GRM5 (ENSMFAG00000034520) #33	ENSMFAG00000057700	ENSMFAG00000051174	ENSMFAG00000048157	ENSMFAG00000056499	TYR (ENSMFAG00000045366) #35	NOX4 (ENSMFAG00000002005) #36
Cercopithecinae_b	ANCESTRAL SPECIES	32	ENSGT00950000182971.B.b.c.a.a	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00940000154847.b	ENSGT00940000153402.c.a.a.b.d	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00550000074935.v	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT00910000147216	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a
Olive baboon	MODERN SPECIES	3	CCDC90B (ENSPANG00000018014) #11	ANKRD42 (ENSPANG00000009554) #8	ENSPANG00000047282	ENSPANG00000048439	ENSPANG00000046399	ENSPANG00000042996	DLG2 (ENSPANG00000007863) #13	TMEM126B (ENSPANG00000014631) #14	TMEM126A (ENSPANG00000011636) #15	ENSPANG00000035892	CCDC89 (ENSPANG00000048782) #17	SYTL2 (ENSPANG00000010114) #18	CCDC83 (ENSPANG00000019126) #19	PICALM (ENSPANG00000019177) #20	EED (ENSPANG00000023331) #21	HIKESHI (ENSPANG00000006476) #22	CCDC81 (ENSPANG00000011943) #23	ENSPANG00000038398 #24	ME3 (ENSPANG00000019664) #25	PRSS23 (ENSPANG00000001585) #28	FZD4 (ENSPANG00000007432) #29	TMEM135 (ENSPANG00000016447) #30	RAB38 (ENSPANG00000007862) #31	ENSPANG00000040539	CTSC (ENSPANG00000006475) #32	ENSPANG00000041846	GRM5 (ENSPANG00000010013) #33	ENSPANG00000042320	TYR (ENSPANG00000050970) #35	NOX4 (ENSPANG00000011635) #36	ENSPANG00000037841
Cercopithecinae_d	ANCESTRAL SPECIES	27	ENSGT00940000154216.a #8	ENSGT00950000182971.B.b.c.a.a	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00940000154847.b	ENSGT00940000153402.c.a.a.b.d	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00550000074935.v	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT01050000244956.b.c.a.b	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT00910000147216	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163778
Drill	MODERN SPECIES	912							ENSMLEG00000042181	TMEM126B (ENSMLEG00000038201) #14	TMEM126A (ENSMLEG00000034150) #15	CREBZF (ENSMLEG00000040560) #16	SYTL2 (ENSMLEG00000032099) #18	CCDC83 (ENSMLEG00000041777) #19	PICALM (ENSMLEG00000038207) #20	ENSMLEG00000035359	EED (ENSMLEG00000032137) #21	HIKESHI (ENSMLEG00000006177) #22	CCDC81 (ENSMLEG00000034883) #23	ME3 (ENSMLEG00000044075) #25	FZD4 (ENSMLEG00000040936) #29	ENSMLEG00000041504	TMEM135 (ENSMLEG00000029558) #30	ENSMLEG00000033478	ENSMLEG00000039077	RAB38 (ENSMLEG00000031633) #31	CTSC (ENSMLEG00000032637) #32	ENSMLEG00000026308	GRM5 (ENSMLEG00000042600) #33	TYR (ENSMLEG00000043191) #35	NOX4 (ENSMLEG00000040210) #36	FOLH1 (ENSMLEG00000044022)	TRIM77 (ENSMLEG00000044304)
Sooty mangabey	MODERN SPECIES	196				DLG2 (ENSCATG00000039862) #13	ENSCATG00000035140	ENSCATG00000034074	TMEM126B (ENSCATG00000029506) #14	TMEM126A (ENSCATG00000029388) #15	CREBZF (ENSCATG00000036954) #16	CCDC89 (ENSCATG00000016164) #17	SYTL2 (ENSCATG00000031643) #18	CCDC83 (ENSCATG00000006895) #19	PICALM (ENSCATG00000044739) #20	ENSCATG00000037926	EED (ENSCATG00000032277) #21	HIKESHI (ENSCATG00000032118) #22	CCDC81 (ENSCATG00000042506) #23	ME3 (ENSCATG00000038267) #25	ENSCATG00000015649	FZD4 (ENSCATG00000012598) #29	TMEM135 (ENSCATG00000001206) #30	ENSCATG00000032850	ENSCATG00000034224	RAB38 (ENSCATG00000034576) #31	CTSC (ENSCATG00000028370) #32	ENSCATG00000017286	GRM5 (ENSCATG00000039645) #33	TYR (ENSCATG00000007854) #35	NOX4 (ENSCATG00000034813) #36	FOLH1 (ENSCATG00000030078)	TRIM77 (ENSCATG00000032552)
Rhinopithecus	ANCESTRAL SPECIES	265				ENSGT00940000155156.b #13	ENSGT00940000154847.b	ENSGT00940000153402.c.a.a.b.d	ENSGT00390000008688.j	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00940000167729	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946
Black snub-nosed monkey	MODERN SPECIES	1515			ENSRBIG00000024137 #13	ENSRBIG00000034832	ENSRBIG00000039292	ENSRBIG00000038408	TMEM126B (ENSRBIG00000027901) #14	TMEM126A (ENSRBIG00000044867) #15	CREBZF (ENSRBIG00000033657) #16	SYTL2 (ENSRBIG00000027668) #18	CCDC83 (ENSRBIG00000041473) #19	PICALM (ENSRBIG00000028102) #20	ENSRBIG00000006505	ENSRBIG00000031252	EED (ENSRBIG00000043003) #21	HIKESHI (ENSRBIG00000030285) #22	CCDC81 (ENSRBIG00000044110) #23	ENSRBIG00000006153 #24	ME3 (ENSRBIG00000038261) #25	PRSS23 (ENSRBIG00000011058) #28	FZD4 (ENSRBIG00000037688) #29	TMEM135 (ENSRBIG00000040442) #30	ENSRBIG00000008442
Golden snub-nosed monkey	MODERN SPECIES	3048												CCDC83 (ENSRROG00000029691) #19	PICALM (ENSRROG00000042437) #20	ENSRROG00000043397	EED (ENSRROG00000033300) #21	HIKESHI (ENSRROG00000044938) #22	CCDC81 (ENSRROG00000034536) #23	ME3 (ENSRROG00000029877) #25	FZD4 (ENSRROG00000009179) #29	TMEM135 (ENSRROG00000026706) #30	ENSRROG00000029825	ENSRROG00000029619
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00940000154216.a #8	ENSGT00950000182971.B.b.c.a.a	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00940000154847.b	ENSGT00940000153402.c.b.b.e.a	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00550000074935.v	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00910000147856	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a
Hominidae	ANCESTRAL SPECIES	1	ENSGT00940000154216.a #8	ENSGT00950000182971.B.b.c.a.a.a	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00940000154847.b	ENSGT00940000153402.c.b.b.e.a	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00550000074935.v	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00910000147856	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	8	ENSGT00940000154216.a #8	ENSGT00950000182971.B.b.c.a.a.a	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00940000154847.b	ENSGT00940000153402.c.b.b.e.a	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00550000074935.v	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT01050000244956.b.c.a.b	ENSGT00910000148359	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00910000147856	ENSGT00940000155336 #35	ENSGT00940000159621 #36
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00940000154216.a #8	ENSGT00950000182971.B.b.c.a.a.a	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00940000154847.b	ENSGT00940000153402.c.b.b.e.a	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00550000074935.v	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT01050000244956.b.c.a.b	ENSGT00910000148359	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00910000147856	ENSGT00940000155336 #35	ENSGT00940000159621 #36
Pan	ANCESTRAL SPECIES	1	ENSGT00940000154216.a #8	ENSGT00950000182971.B.b.c.a.a.a	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00940000154847.b	ENSGT00940000153402.c.b.b.e.a	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00550000074935.v	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT01050000244956.b.c.a.b	ENSGT00910000148359	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00390000016475.e.a.a.b	ENSGT00910000146946	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00910000147856	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a
Chimpanzee	MODERN SPECIES	2	ANKRD42 (ENSPTRG00000004128) #8	CCDC90B (ENSPTRG00000004129) #11	DLG2 (ENSPTRG00000004131) #13	ENSPTRG00000045384	ENSPTRG00000043496	TMEM126B (ENSPTRG00000004133) #14	ENSPTRG00000049899	TMEM126A (ENSPTRG00000004134) #15	CREBZF (ENSPTRG00000046588) #16	CCDC89 (ENSPTRG00000028447) #17	SYTL2 (ENSPTRG00000004137) #18	CCDC83 (ENSPTRG00000004139) #19	PICALM (ENSPTRG00000004141) #20	ENSPTRG00000050577	EED (ENSPTRG00000047379) #21	HIKESHI (ENSPTRG00000004144) #22	CCDC81 (ENSPTRG00000004145) #23	ME3 (ENSPTRG00000004146) #25	ENSPTRG00000052198	ENSPTRG00000047974	FZD4 (ENSPTRG00000004148) #29	TMEM135 (ENSPTRG00000052201) #30	ENSPTRG00000043512	RAB38 (ENSPTRG00000004151) #31	CTSC (ENSPTRG00000004152) #32	GRM5 (ENSPTRG00000004153) #33	ENSPTRG00000050427	TYR (ENSPTRG00000004155) #35	NOX4 (ENSPTRG00000004156) #36	FOLH1 (ENSPTRG00000004159)	ENSPTRG00000051097
Bonobo	MODERN SPECIES	2	PCF11 (ENSPPAG00000009517) #7	ANKRD42 (ENSPPAG00000030979) #8	ENSPPAG00000037079	CCDC90B (ENSPPAG00000031300) #11	DLG2 (ENSPPAG00000040464) #13	ENSPPAG00000030712	ENSPPAG00000035286 #14	TMEM126A (ENSPPAG00000030419) #15	CREBZF (ENSPPAG00000039767) #16	CCDC89 (ENSPPAG00000024671) #17	SYTL2 (ENSPPAG00000031499) #18	CCDC83 (ENSPPAG00000018209) #19	PICALM (ENSPPAG00000036162) #20	ENSPPAG00000040243	EED (ENSPPAG00000042452) #21	HIKESHI (ENSPPAG00000037523) #22	CCDC81 (ENSPPAG00000033187) #23	ME3 (ENSPPAG00000027117) #25	ENSPPAG00000030561	ENSPPAG00000040183	FZD4 (ENSPPAG00000039896) #29	TMEM135 (ENSPPAG00000017375) #30	ENSPPAG00000029704	ENSPPAG00000025428	RAB38 (ENSPPAG00000037174) #31	CTSC (ENSPPAG00000039886) #32	GRM5 (ENSPPAG00000028715) #33	ENSPPAG00000037909	TYR (ENSPPAG00000028935) #35	ENSPPAG00000043311	ENSPPAG00000040587
Human	MODERN SPECIES	2	PRCP (ENSG00000137509)	DDIAS (ENSG00000165490)	RAB30 (ENSG00000137502)	PCF11 (ENSG00000165494) #7	ANKRD42 (ENSG00000137494) #8	CCDC90B (ENSG00000137500) #11	DLG2 (ENSG00000150672) #13	TMEM126B (ENSG00000171204) #14	TMEM126A (ENSG00000171202) #15	CREBZF (ENSG00000137504) #16	CCDC89 (ENSG00000179071) #17	SYTL2 (ENSG00000137501) #18	CCDC83 (ENSG00000150676) #19	PICALM (ENSG00000073921) #20	EED (ENSG00000074266) #21	HIKESHI (ENSG00000149196) #22	CCDC81 (ENSG00000149201) #23	ME3 (ENSG00000151376) #25	PRSS23 (ENSG00000150687) #28	FZD4 (ENSG00000174804) #29	TMEM135 (ENSG00000166575) #30	RAB38 (ENSG00000123892) #31	CTSC (ENSG00000109861) #32	GRM5 (ENSG00000168959) #33	TYR (ENSG00000077498) #35	NOX4 (ENSG00000086991) #36	TRIM77 (ENSG00000214414)	TRIM49 (ENSG00000168930)	TRIM64B (ENSG00000189253)	TRIM49D1 (ENSG00000223417)	TRIM49D2 (ENSG00000233802)
Gorilla	MODERN SPECIES	2	CCDC90B (ENSGGOG00000009045) #11	ENSGGOG00000041726	DLG2 (ENSGGOG00000034908) #13	ENSGGOG00000038080	ENSGGOG00000023558	ENSGGOG00000022340	TMEM126B (ENSGGOG00000002136) #14	TMEM126A (ENSGGOG00000027742) #15	CREBZF (ENSGGOG00000006942) #16	CCDC89 (ENSGGOG00000001828) #17	SYTL2 (ENSGGOG00000001830) #18	CCDC83 (ENSGGOG00000002315) #19	PICALM (ENSGGOG00000009116) #20	ENSGGOG00000024786	EED (ENSGGOG00000007517) #21	HIKESHI (ENSGGOG00000023168) #22	CCDC81 (ENSGGOG00000012103) #23	ME3 (ENSGGOG00000009837) #25	ENSGGOG00000037978	ENSGGOG00000043394	FZD4 (ENSGGOG00000037053) #29	TMEM135 (ENSGGOG00000002577) #30	ENSGGOG00000038789	ENSGGOG00000043000	RAB38 (ENSGGOG00000008277) #31	CTSC (ENSGGOG00000002117) #32	GRM5 (ENSGGOG00000008825) #33	ENSGGOG00000024146	ENSGGOG00000043221	TYR (ENSGGOG00000009122) #35	ENSGGOG00000003220
Orangutan	MODERN SPECIES	2	DDIAS (ENSPPYG00000003732)	RAB30 (ENSPPYG00000041373)	PCF11 (ENSPPYG00000003734) #7	ANKRD42 (ENSPPYG00000003735) #8	CCDC90B (ENSPPYG00000003736) #11	DLG2 (ENSPPYG00000003737) #13	TMEM126A (ENSPPYG00000003738) #15	CREBZF (ENSPPYG00000003740) #16	CCDC89 (ENSPPYG00000003741) #17	SYTL2 (ENSPPYG00000003742) #18	CCDC83 (ENSPPYG00000003743) #19	ENSPPYG00000038885	PICALM (ENSPPYG00000003744) #20	ENSPPYG00000032045	EED (ENSPPYG00000003745) #21	HIKESHI (ENSPPYG00000003746) #22	CCDC81 (ENSPPYG00000003747) #23	ENSPPYG00000036300 #24	ME3 (ENSPPYG00000003748) #25	PRSS23 (ENSPPYG00000003749) #28	FZD4 (ENSPPYG00000003750) #29	TMEM135 (ENSPPYG00000003751) #30	RAB38 (ENSPPYG00000003752) #31	CTSC (ENSPPYG00000003753) #32	GRM5 (ENSPPYG00000003754) #33	TYR (ENSPPYG00000003755) #35	NOX4 (ENSPPYG00000003756) #36	FOLH1 (ENSPPYG00000003757)	TRIM77 (ENSPPYG00000003758)	ENSPPYG00000004089	ENSPPYG00000040623
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES		TYK2 (ENSNLEG00000012193)	CDC37 (ENSNLEG00000012202)	PDE4A (ENSNLEG00000012207)	ENSNLEG00000012241	ENSNLEG00000032388	ATG4D (ENSNLEG00000012244)	ENSNLEG00000012256	CDKN2D (ENSNLEG00000012265)	ENSNLEG00000012270	ENSNLEG00000035868	SLC44A2 (ENSNLEG00000012275)	ILF3 (ENSNLEG00000012290)	QTRT1 (ENSNLEG00000012343)	DNM2 (ENSNLEG00000012352)	TMED1 (ENSNLEG00000012365)	ENSNLEG00000027586 #22	ENSNLEG00000031325	CARM1 (ENSNLEG00000012371)	YIPF2 (ENSNLEG00000012384)	TIMM29 (ENSNLEG00000012388)	SMARCA4 (ENSNLEG00000012389)	ENSNLEG00000012467	SPC24 (ENSNLEG00000012487)	KANK2 (ENSNLEG00000012488)	ENSNLEG00000012494	DOCK6 (ENSNLEG00000026530)	ENSNLEG00000029153	RAB3D (ENSNLEG00000012495)	ENSNLEG00000012497	CCDC159 (ENSNLEG00000012498)	ENSNLEG00000012508
Gibbon	MODERN SPECIES	5	ENSNLEG00000033396	ANKRD42 (ENSNLEG00000016524) #8	CCDC90B (ENSNLEG00000016478) #11	ENSNLEG00000035779	ENSNLEG00000028515	DLG2 (ENSNLEG00000016423) #13	TMEM126B (ENSNLEG00000016414) #14	TMEM126A (ENSNLEG00000016408) #15	CREBZF (ENSNLEG00000031587) #16	CCDC89 (ENSNLEG00000019101) #17	SYTL2 (ENSNLEG00000016320) #18	CCDC83 (ENSNLEG00000016302) #19	PICALM (ENSNLEG00000016266) #20	ENSNLEG00000016264	EED (ENSNLEG00000016231) #21	HIKESHI (ENSNLEG00000016224) #22	CCDC81 (ENSNLEG00000016195) #23	ME3 (ENSNLEG00000016167) #25	ENSNLEG00000027369	FZD4 (ENSNLEG00000034493) #29	ENSNLEG00000028034	TMEM135 (ENSNLEG00000016150) #30	ENSNLEG00000031173	RAB38 (ENSNLEG00000016147) #31	CTSC (ENSNLEG00000016103) #32	ENSNLEG00000033791	GRM5 (ENSNLEG00000016099) #33	TYR (ENSNLEG00000016083) #35	NOX4 (ENSNLEG00000015992) #36	ENSNLEG00000015991	FOLH1 (ENSNLEG00000015891)
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00940000155156.a.b ##13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000004056 #22
Hedgehog	MODERN SPECIES	4528																HIKESHI (ENSEEUG00000014778) #22
Common shrew	MODERN SPECIES	3480																HIKESHI (ENSSARG00000006945) #22
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00940000155156.a.b ##13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163440
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00940000155156.a.b ##13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000160005.A
Carnivora	ANCESTRAL SPECIES	21	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00940000155156.a.b ##13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000160005.B
Felidae	ANCESTRAL SPECIES		ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #14	ENSGT00520000055616.a.q.b #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000160005.B
Panthera	ANCESTRAL SPECIES	23	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #14	ENSGT00520000055616.a.q.b #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000160005.B
Tiger	MODERN SPECIES	123	RAB30 (ENSPTIG00000009836)	PCF11 (ENSPTIG00000009975) #7	ANKRD42 (ENSPTIG00000010041) #8	CCDC90B (ENSPTIG00000010203) #11	ENSPTIG00000010312 #13	ENSPTIG00000010529 #13	TMEM126B (ENSPTIG00000011015) #14	ENSPTIG00000011055 #15	ENSPTIG00000011085	CCDC89 (ENSPTIG00000009905) #17	ENSPTIG00000011280 #18	CCDC83 (ENSPTIG00000012014) #19	ENSPTIG00000009913	PICALM (ENSPTIG00000012288) #20	EED (ENSPTIG00000012760) #21	HIKESHI (ENSPTIG00000012915) #22	CCDC81 (ENSPTIG00000013106) #23	ME3 (ENSPTIG00000013285) #25	PRSS23 (ENSPTIG00000009955) #28	FZD4 (ENSPTIG00000013786) #29	TMEM135 (ENSPTIG00000013833) #30	RAB38 (ENSPTIG00000014043) #31	CTSC (ENSPTIG00000014202) #32	GRM5 (ENSPTIG00000014395) #33	TYR (ENSPTIG00000014539) #35	NOX4 (ENSPTIG00000015391) #36	FOLH1 (ENSPTIG00000016704)	ENSPTIG00000017086	ENSPTIG00000017277	TRIM77 (ENSPTIG00000017304)	UBTFL1 (ENSPTIG00000009976)
Panthera_a	ANCESTRAL SPECIES	24	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #14	ENSGT00520000055616.a.q.b #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000160005.B
leopard	MODERN SPECIES	17	PCF11 (ENSPPRG00000024270) #7	ANKRD42 (ENSPPRG00000024421) #8	CCDC90B (ENSPPRG00000013976) #11	ENSPPRG00000012171 #13	ENSPPRG00000010067 #13	TMEM126B (ENSPPRG00000005529) #14	ENSPPRG00000005013 #15	ENSPPRG00000004597	CCDC89 (ENSPPRG00000016516) #17	ENSPPRG00000004036 #18	CCDC83 (ENSPPRG00000018265) #19	ENSPPRG00000016079	PICALM (ENSPPRG00000015638) #20	ENSPPRG00000015994	EED (ENSPPRG00000012039) #21	HIKESHI (ENSPPRG00000010865) #22	CCDC81 (ENSPPRG00000009583) #23	ME3 (ENSPPRG00000008336) #25	PRSS23 (ENSPPRG00000015765) #28	FZD4 (ENSPPRG00000004892) #29	TMEM135 (ENSPPRG00000004298) #30	RAB38 (ENSPPRG00000002670) #31	CTSC (ENSPPRG00000002465) #32	GRM5 (ENSPPRG00000001606) #33	TYR (ENSPPRG00000001016) #35	NOX4 (ENSPPRG00000000522) #36	FOLH1 (ENSPPRG00000017997)	ENSPPRG00000013571	TRIM77 (ENSPPRG00000012936)	UBTFL1 (ENSPPRG00000015347)	NAALAD2 (ENSPPRG00000012456)
lion	MODERN SPECIES	10	RAB30 (ENSPLOG00000020748)	PCF11 (ENSPLOG00000020679) #7	ANKRD42 (ENSPLOG00000020576) #8	CCDC90B (ENSPLOG00000020533) #11	DLG2 (ENSPLOG00000019919) #13	ENSPLOG00000019612	ENSPLOG00000019583	TMEM126B (ENSPLOG00000019541) #14	ENSPLOG00000019486 #15	CREBZF (ENSPLOG00000019442) #16	CCDC89 (ENSPLOG00000019413) #17	SYTL2 (ENSPLOG00000019183) #18	CCDC83 (ENSPLOG00000019073) #19	PICALM (ENSPLOG00000018802) #20	EED (ENSPLOG00000018287) #21	HIKESHI (ENSPLOG00000018145) #22	CCDC81 (ENSPLOG00000017860) #23	ENSPLOG00000017816 #24	ME3 (ENSPLOG00000017730) #25	ENSPLOG00000017695 #26	PRSS23 (ENSPLOG00000017679) #28	FZD4 (ENSPLOG00000017652) #29	TMEM135 (ENSPLOG00000017505) #30	RAB38 (ENSPLOG00000017440) #31	CTSC (ENSPLOG00000017389) #32	GRM5 (ENSPLOG00000017218) #33	TYR (ENSPLOG00000017151) #35	NOX4 (ENSPLOG00000016100) #36	FOLH1 (ENSPLOG00000015364)	ENSPLOG00000015181	ENSPLOG00000014641
Cat	MODERN SPECIES	241	PRCP (ENSFCAG00000028082)	DDIAS (ENSFCAG00000031353)	RAB30 (ENSFCAG00000014416)	PCF11 (ENSFCAG00000022938) #7	ANKRD42 (ENSFCAG00000029546) #8	CCDC90B (ENSFCAG00000023013) #11	DLG2 (ENSFCAG00000027392) #13	TMEM126B (ENSFCAG00000042698) #14	ENSFCAG00000027606 #15	CREBZF (ENSFCAG00000042678) #16	CCDC89 (ENSFCAG00000000408) #17	SYTL2 (ENSFCAG00000029903) #18	CCDC83 (ENSFCAG00000030354) #19	PICALM (ENSFCAG00000029123) #20	EED (ENSFCAG00000001593) #21	HIKESHI (ENSFCAG00000031418) #22	CCDC81 (ENSFCAG00000024111) #23	ENSFCAG00000028997 #24	ME3 (ENSFCAG00000011823) #25	FZD4 (ENSFCAG00000033140) #29	TMEM135 (ENSFCAG00000028774) #30	RAB38 (ENSFCAG00000008444) #31	CTSC (ENSFCAG00000008445) #32	GRM5 (ENSFCAG00000035511) #33	TYR (ENSFCAG00000024128) #35	NOX4 (ENSFCAG00000026770) #36	FOLH1 (ENSFCAG00000007740)	ENSFCAG00000008521	ENSFCAG00000043585	ENSFCAG00000018518	ENSFCAG00000049822
Caniformia	ANCESTRAL SPECIES	17	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174
Canidae	ANCESTRAL SPECIES	17	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00390000013440.d	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000160005.B.g
Canis_lupus	ANCESTRAL SPECIES	21	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00390000013440.d	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00540000070023.c.b.a.a.a.b.a.a	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787.f.a #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000160005.B.g
Dog	MODERN SPECIES	13	PCF11 (ENSCAFG00845011978) #7	ANKRD42 (ENSCAFG00845011790) #8	CCDC90B (ENSCAFG00845011734) #11	DLG2 (ENSCAFG00845009396) #13	ENSCAFG00845008703 #14	ENSCAFG00845008664	ENSCAFG00845008649	TMEM126A (ENSCAFG00845008622) #15	ENSCAFG00845008580	CCDC89 (ENSCAFG00845008484) #17	SYTL2 (ENSCAFG00845008296) #18	CCDC83 (ENSCAFG00845008116) #19	ENSCAFG00845008086	PICALM (ENSCAFG00845007629) #20	HIKESHI (ENSCAFG00845007205) #21	HIKESHI (ENSCAFG00845006940) #22	CCDC81 (ENSCAFG00845006799) #23	ENSCAFG00845006757 #24	ME3 (ENSCAFG00845006657) #25	ENSCAFG00845006591 #26	PRSS23 (ENSCAFG00845006550) #28	FZD4 (ENSCAFG00845006501) #29	TMEM135 (ENSCAFG00845006352) #30	ENSCAFG00845006234 #31	CTSC (ENSCAFG00845026305) #32	GRM5 (ENSCAFG00845025940) #33	TYR (ENSCAFG00845025889) #35	NOX4 (ENSCAFG00845025676) #36	FOLH1B (ENSCAFG00845025397)	ENSCAFG00845025305	ENSCAFG00845025158
Dingo	MODERN SPECIES	245	RAB30 (ENSCAFG00020017865)	PCF11 (ENSCAFG00020017859) #7	ANKRD42 (ENSCAFG00020017853) #8	CCDC90B (ENSCAFG00020017849) #11	ENSCAFG00020017845	DLG2 (ENSCAFG00020017781) #13	TMEM126B (ENSCAFG00020017765) #14	ENSCAFG00020017763	TMEM126A (ENSCAFG00020017761) #15	CREBZF (ENSCAFG00020017758) #16	CCDC89 (ENSCAFG00020017757) #17	ENSCAFG00020017754 #18	CCDC83 (ENSCAFG00020017748) #19	PICALM (ENSCAFG00020017726) #20	EED (ENSCAFG00020017721) #21	HIKESHI (ENSCAFG00020017719) #22	CCDC81 (ENSCAFG00020017715) #23	ENSCAFG00020017713 #24	ME3 (ENSCAFG00020017304) #25	ENSCAFG00020017269 #26	PRSS23 (ENSCAFG00020017267) #28	FZD4 (ENSCAFG00020017261) #29	TMEM135 (ENSCAFG00020017038) #30	RAB38 (ENSCAFG00020017027) #31	ENSCAFG00020016953 #32	GRM5 (ENSCAFG00020016867) #33	TYR (ENSCAFG00020016835) #35	NOX4 (ENSCAFG00020016814) #36	FOLH1 (ENSCAFG00020016805)	ENSCAFG00020016778	TRIM77 (ENSCAFG00020016740)
Red fox	MODERN SPECIES	109	ENSVVUG00000017510	DLG2 (ENSVVUG00000017516) #13	ENSVVUG00000017560	ENSVVUG00000017562	TMEM126B (ENSVVUG00000017564) #14	ENSVVUG00000017568	TMEM126A (ENSVVUG00000017574) #15	CREBZF (ENSVVUG00000017577) #16	CCDC89 (ENSVVUG00000017579) #17	SYTL2 (ENSVVUG00000017582) #18	ENSVVUG00000017599	CCDC83 (ENSVVUG00000017603) #19	ENSVVUG00000017613	PICALM (ENSVVUG00000017626) #20	EED (ENSVVUG00000017672) #21	HIKESHI (ENSVVUG00000017683) #22	CCDC81 (ENSVVUG00000017688) #23	ME3 (ENSVVUG00000017722) #25	PRSS23 (ENSVVUG00000018688) #28	FZD4 (ENSVVUG00000018692) #29	TMEM135 (ENSVVUG00000018698) #30	RAB38 (ENSVVUG00000018733) #31	CTSC (ENSVVUG00000018738) #32	GRM5 (ENSVVUG00000018755) #33	TYR (ENSVVUG00000018778) #35	NOX4 (ENSVVUG00000018823) #36
Caniformia_b	ANCESTRAL SPECIES	3	ENSGT00910000147508	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981
Mustelinae	ANCESTRAL SPECIES	25	ENSGT00910000147508	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981
Ferret	MODERN SPECIES	259						TMEM126B (ENSMPUG00000009961) #14	TMEM126A (ENSMPUG00000009968) #15	CREBZF (ENSMPUG00000009974) #16	CCDC89 (ENSMPUG00000018686) #17	ENSMPUG00000009977 #18	ENSMPUG00000009986	CCDC83 (ENSMPUG00000009994) #19	PICALM (ENSMPUG00000010037) #20	ENSMPUG00000010054	EED (ENSMPUG00000010062) #21	HIKESHI (ENSMPUG00000010148) #22	CCDC81 (ENSMPUG00000010154) #23	ENSMPUG00000018687 #24	ME3 (ENSMPUG00000010166) #25	PRSS23 (ENSMPUG00000018688) #28	FZD4 (ENSMPUG00000010353) #29	ENSMPUG00000010356	TMEM135 (ENSMPUG00000010358) #30	RAB38 (ENSMPUG00000010366) #31	CTSC (ENSMPUG00000010370) #32	GRM5 (ENSMPUG00000010375) #33	TYR (ENSMPUG00000010381) #35	NOX4 (ENSMPUG00000010385) #36	FOLH1 (ENSMPUG00000010390)	NAALAD2 (ENSMPUG00000010401)	CHORDC1 (ENSMPUG00000010548)
American mink	MODERN SPECIES	6	DDIAS (ENSNVIG00000001340)	RAB30 (ENSNVIG00000001367)	PCF11 (ENSNVIG00000001382) #7	ANKRD42 (ENSNVIG00000001421) #8	CCDC90B (ENSNVIG00000001464) #11	DLG2 (ENSNVIG00000001534) #13	TMEM126B (ENSNVIG00000002727) #14	T126A (ENSNVIG00000002771) #15	CREBZF (ENSNVIG00000002789) #16	CCDC89 (ENSNVIG00000002820) #17	SYTL2 (ENSNVIG00000002830) #18	CCDC83 (ENSNVIG00000003123) #19	PICALM (ENSNVIG00000003187) #20	ENSNVIG00000003391	EED (ENSNVIG00000003411) #21	CK073 (ENSNVIG00000003496) #22	CCDC81 (ENSNVIG00000003531) #23	ENSNVIG00000003607 #24	ME3 (ENSNVIG00000003626) #25	ENSNVIG00000003666	PRS23 (ENSNVIG00000003676) #28	FZD4 (ENSNVIG00000003680) #29	TM135 (ENSNVIG00000003728) #30	ENSNVIG00000003901	E7ENT2 (ENSNVIG00000003909) #31	CTSC (ENSNVIG00000003934) #32	GRM5 (ENSNVIG00000004087) #33	ENSNVIG00000004099	ENSNVIG00000004112 #33	TYR (ENSNVIG00000004130) #35	NOX4 (ENSNVIG00000004160) #36
Ursidae	ANCESTRAL SPECIES	15	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00950000186113	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b.m	ENSGT00940000154174
Giant Panda	MODERN SPECIES	18	PRCP (ENSAMEG00000005213)	DDIAS (ENSAMEG00000026663)	RAB30 (ENSAMEG00000005231)	PCF11 (ENSAMEG00000005241) #7	ANKRD42 (ENSAMEG00000005277) #8	CCDC90B (ENSAMEG00000005343) #11	DLG2 (ENSAMEG00000008686) #13	TMEM126B (ENSAMEG00000008700) #14	TMEM126A (ENSAMEG00000008703) #15	ENSAMEG00000026222	CCDC89 (ENSAMEG00000019526) #17	SYTL2 (ENSAMEG00000008713) #18	CCDC83 (ENSAMEG00000008762) #19	PICALM (ENSAMEG00000008778) #20	EED (ENSAMEG00000008806) #21	HIKESHI (ENSAMEG00000008810) #22	CCDC81 (ENSAMEG00000006169) #23	ENSAMEG00000024714 #26	ME3 (ENSAMEG00000006202) #25	ENSAMEG00000023464	FZD4 (ENSAMEG00000025739) #29	TMEM135 (ENSAMEG00000006301) #30	RAB38 (ENSAMEG00000015103) #31	CTSC (ENSAMEG00000015113) #32	GRM5 (ENSAMEG00000024209) #33	TYR (ENSAMEG00000005958) #35	NOX4 (ENSAMEG00000005207) #36	ENSAMEG00000005259	ENSAMEG00000007477	ENSAMEG00000007577	ENSAMEG00000028153
Ursus	ANCESTRAL SPECIES	187								ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00950000186113	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a
Polar bear	MODERN SPECIES	261									TMEM126B (ENSUMAG00000023888) #14	TMEM126A (ENSUMAG00000023889) #15	CCDC89 (ENSUMAG00000023891) #17	ENSUMAG00000023892 #18	CCDC83 (ENSUMAG00000023895) #19	PICALM (ENSUMAG00000023896) #20	EED (ENSUMAG00000023898) #21	HIKESHI (ENSUMAG00000023906) #22	CCDC81 (ENSUMAG00000023908) #23	ENSUMAG00000023909 #24	ENSUMAG00000023910 #25	ENSUMAG00000023980 #25	ENSUMAG00000024049	PRSS23 (ENSUMAG00000024052) #28	FZD4 (ENSUMAG00000024054) #29	TMEM135 (ENSUMAG00000024056) #30	RAB38 (ENSUMAG00000024064) #31	CTSC (ENSUMAG00000024065) #32	GRM5 (ENSUMAG00000024067) #33	TYR (ENSUMAG00000024078) #35	NOX4 (ENSUMAG00000024090) #36	FOLH1 (ENSUMAG00000024123)
American black bear	MODERN SPECIES	5610															EED (ENSUAMG00000026103) #21	HIKESHI (ENSUAMG00000026104) #22
Laurasiatheria_c	ANCESTRAL SPECIES	9	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000163858
Equus	ANCESTRAL SPECIES	15	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00860000135923	ENSGT00550000074698.k.b.b.jc	ENSGT00940000163242.b.a	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00900000143351 #26	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00940000168933	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409
Donkey	MODERN SPECIES	12	PCF11 (ENSEASG00005012749) #7	CCDC90B (ENSEASG00005012746) #11	ANKRD42 (ENSEASG00005012744) #8	ENSEASG00005024778	ENSEASG00005024412	ENSEASG00005012741	DLG2 (ENSEASG00005012722) #13	TMEM126B (ENSEASG00005024050) #14	TMEM126A (ENSEASG00005023675) #15	CREBZF (ENSEASG00005030453) #16	CCDC89 (ENSEASG00005012696) #17	SYTL2 (ENSEASG00005012693) #18	CCDC83 (ENSEASG00005012690) #19	PICALM (ENSEASG00005012685) #20	EED (ENSEASG00005012683) #21	HIKESHI (ENSEASG00005012681) #22	CCDC81 (ENSEASG00005012679) #23	ENSEASG00005038186 #24	ME3 (ENSEASG00005012671) #25	PRSS23 (ENSEASG00005035692) #28	FZD4 (ENSEASG00005012666) #29	ENSEASG00005012664	TMEM135 (ENSEASG00005012663) #30	RAB38 (ENSEASG00005025963) #31	CTSC (ENSEASG00005027690) #32	ENSEASG00005032755 #32	ENSEASG00005012648	GRM5 (ENSEASG00005012645) #33	TYR (ENSEASG00005012641) #35	ENSEASG00005012636 #36	ENSEASG00005012629
Horse	DUPLICATION
Horse	MODERN SPECIES	28	ANKRD42 (ENSECAG00000018421) #8	ENSECAG00000044671	ENSECAG00000052899	ENSECAG00000006065	ENSECAG00000011596	DLG2 (ENSECAG00000013426) #13	TMEM126B (ENSECAG00000010871) #14	TMEM126A (ENSECAG00000010580) #15	CREBZF (ENSECAG00000051993) #16	CCDC89 (ENSECAG00000005713) #17	SYTL2 (ENSECAG00000006803) #18	CCDC83 (ENSECAG00000023925) #19	PICALM (ENSECAG00000019264) #20	EED (ENSECAG00000016295) #21	ENSECAG00000059054 #22	HIKESHI (ENSECAG00000049412) #22	CCDC81 (ENSECAG00000015265) #23	ENSECAG00000005619 #24	ENSECAG00000027950 #26	ME3 (ENSECAG00000007798) #25	PRSS23 (ENSECAG00000005563) #28	FZD4 (ENSECAG00000030065) #29	ENSECAG00000059232	ENSECAG00000051350	ENSECAG00000003430	ENSECAG00000044202	TMEM135 (ENSECAG00000007648) #30	RAB38 (ENSECAG00000001775) #31	CTSC (ENSECAG00000020881) #32	ENSECAG00000020876	GRM5 (ENSECAG00000018967) #33
Horse	MODERN SPECIES	28	CCDC90B (ENSECAG00000013853) #11	ANKRD42 (ENSECAG00000018421) #8	ENSECAG00000044671	ENSECAG00000052899	ENSECAG00000006065	ENSECAG00000011596	DLG2 (ENSECAG00000013426) #13	TMEM126B (ENSECAG00000010871) #14	TMEM126A (ENSECAG00000010580) #15	CREBZF (ENSECAG00000051993) #16	CCDC89 (ENSECAG00000005713) #17	SYTL2 (ENSECAG00000006803) #18	CCDC83 (ENSECAG00000023925) #19	PICALM (ENSECAG00000019264) #20	EED (ENSECAG00000016295) #21	ENSECAG00000059054 #22	HIKESHI (ENSECAG00000049412) #22	CCDC81 (ENSECAG00000015265) #23	ENSECAG00000005619 #24	ENSECAG00000027950 #26	ME3 (ENSECAG00000007798) #25	PRSS23 (ENSECAG00000005563) #28	FZD4 (ENSECAG00000030065) #29	ENSECAG00000059232	ENSECAG00000051350	ENSECAG00000003430	ENSECAG00000044202	TMEM135 (ENSECAG00000007648) #30	RAB38 (ENSECAG00000001775) #31	CTSC (ENSECAG00000020881) #32	ENSECAG00000020876
Chiroptera	ANCESTRAL SPECIES	5	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b.cb #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000160005.A	ENSGT00940000163440
Megabat	MODERN SPECIES	2698															EED (ENSPVAG00000007530) #21	HIKESHI (ENSPVAG00000007532) #22	CCDC81 (ENSPVAG00000007534) #23	ME3 (ENSPVAG00000007536) #25
Microchiroptera	ANCESTRAL SPECIES	2	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b.cb #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409	ENSGT00940000163858	ENSGT00940000163440
Microbat	MODERN SPECIES	1043							ENSMLUG00000008469	TMEM126B (ENSMLUG00000005891) #14	TMEM126A (ENSMLUG00000005896) #15	CCDC89 (ENSMLUG00000005906) #17	ENSMLUG00000005910 #18	CCDC83 (ENSMLUG00000005923) #19	PICALM (ENSMLUG00000005936) #20	ENSMLUG00000026711	EED (ENSMLUG00000014688) #21	HIKESHI (ENSMLUG00000016260) #22	CCDC81 (ENSMLUG00000001952) #23	ME3 (ENSMLUG00000001964) #25	PRSS23 (ENSMLUG00000001979) #28	FZD4 (ENSMLUG00000009453) #29	ENSMLUG00000029442 #30	ENSMLUG00000008814 #30	RAB38 (ENSMLUG00000010537) #31	CTSC (ENSMLUG00000010550) #32	GRM5 (ENSMLUG00000016200) #33	ENSMLUG00000024818	TYR (ENSMLUG00000016206) #35	NOX4 (ENSMLUG00000016907) #36	ENSMLUG00000025886	FOLH1 (ENSMLUG00000008308)	ENSMLUG00000023565
Greater horseshoe bat	DUPLICATION
Greater horseshoe bat	MODERN SPECIES	2	RAB30 (ENSRFEG00010010335)	PCF11 (ENSRFEG00010010412) #7	ENSRFEG00010010518 #8	ENSRFEG00010010648 #11	DLG2 (ENSRFEG00010011148) #13	ENSRFEG00010012064	TMEM126B (ENSRFEG00010012127) #14	TMEM126A (ENSRFEG00010012220) #15	CREBZF (ENSRFEG00010012287) #16	CCDC89 (ENSRFEG00010012330) #17	SYTL2 (ENSRFEG00010012365) #18	ENSRFEG00010012812 #19	PICALM (ENSRFEG00010012989) #20	EED (ENSRFEG00010013379) #21	ENSRFEG00010013602	HIKESHI (ENSRFEG00010013658) #22	ENSRFEG00010013854	CCDC81 (ENSRFEG00010013935) #23	ME3 (ENSRFEG00010014578) #25	ENSRFEG00010014821 #26	PRSS23 (ENSRFEG00010014842) #28	FZD4 (ENSRFEG00010014860) #29	ENSRFEG00010014879	TMEM135 (ENSRFEG00010014945) #30	RAB38 (ENSRFEG00010015300) #31	CTSC (ENSRFEG00010015349) #32	GRM5 (ENSRFEG00010015430) #33	TYR (ENSRFEG00010015497) #35	NOX4 (ENSRFEG00010015643) #36	FOLH1 (ENSRFEG00010017343)	ENSRFEG00010017811
Greater horseshoe bat	MODERN SPECIES	13	MAFG (ENSRFEG00010006018)	ENSRFEG00010006039	PYCR1 (ENSRFEG00010006097)	MYADML2 (ENSRFEG00010006161)	NOTUM (ENSRFEG00010006190)	ASPSCR1 (ENSRFEG00010006266)	ENSRFEG00010006356	LRRC45 (ENSRFEG00010006400)	RAC3 (ENSRFEG00010006465)	DCXR (ENSRFEG00010006515)	RFNG (ENSRFEG00010006544)	GPS1 (ENSRFEG00010006597)	DUS1L (ENSRFEG00010006724)	FASN (ENSRFEG00010006788)	CCDC57 (ENSRFEG00010006897)	ENSRFEG00010006971 #22	SLC16A3 (ENSRFEG00010007003)	CSNK1D (ENSRFEG00010007075)	ENSRFEG00010007334	ENSRFEG00010007356	UTS2R (ENSRFEG00010007415)	OGFOD3 (ENSRFEG00010007444)	HEXD (ENSRFEG00010007486)	CYBC1 (ENSRFEG00010007520)	NARF (ENSRFEG00010007613)	FOXK2 (ENSRFEG00010007836)	RAB40B (ENSRFEG00010007943)	WDR45B (ENSRFEG00010008010)	FN3KRP (ENSRFEG00010008071)	FN3K (ENSRFEG00010008116)	TBCD (ENSRFEG00010008186)
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00990000214054	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163440
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00990000214054	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163440
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00990000214054	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163440
Cetacea	ANCESTRAL SPECIES	4	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163440.g	ENSGT00940000162409
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000010283.k.b	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.i
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453.k.a #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a.m.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000010283.k.b	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.i
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453.k.a #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a.m.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000010283.k.b	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.i
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453.k.a #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a.m.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.i	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174
Narwhal	MODERN SPECIES	314	PRCP (ENSMMNG00015017470)	DDIAS (ENSMMNG00015017356)	RAB30 (ENSMMNG00015017300)	PCF11 (ENSMMNG00015017250) #7	ANKRD42 (ENSMMNG00015017078) #8	CCDC90B (ENSMMNG00015017033) #11	DLG2 (ENSMMNG00015015492) #13	TMEM126B (ENSMMNG00015015104) #14	ENSMMNG00015015089 #15	CREBZF (ENSMMNG00015015075) #16	CCDC89 (ENSMMNG00015015061) #17	ENSMMNG00015015000 #18	CCDC83 (ENSMMNG00015014970) #19	PICALM (ENSMMNG00015014880) #20	EED (ENSMMNG00015014804) #21	HIKESHI (ENSMMNG00015014769) #22	CCDC81 (ENSMMNG00015014732) #23	ENSMMNG00015014700 #24	ME3 (ENSMMNG00015014679) #25	PRSS23 (ENSMMNG00015014667) #28	FZD4 (ENSMMNG00015014656) #29	TMEM135 (ENSMMNG00015014607) #30	RAB38 (ENSMMNG00015014573) #31	CTSC (ENSMMNG00015014542) #32	GRM5 (ENSMMNG00015014498) #33	TYR (ENSMMNG00015014453) #35	NOX4 (ENSMMNG00015021151) #36	NAALAD2 (ENSMMNG00015020956)	CHORDC1 (ENSMMNG00015020880)	FAT3 (ENSMMNG00015020732)	MTNR1B (ENSMMNG00015020672)
Beluga whale	MODERN SPECIES	2	RAB30 (ENSDLEG00000002770)	PCF11 (ENSDLEG00000002774) #7	ANKRD42 (ENSDLEG00000002791) #8	ENSDLEG00000002798	ENSDLEG00000002802 #11	DLG2 (ENSDLEG00000002821) #13	ENSDLEG00000002911	TMEM126B (ENSDLEG00000002918) #14	ENSDLEG00000002926 #15	CREBZF (ENSDLEG00000002931) #16	CCDC89 (ENSDLEG00000002938) #17	ENSDLEG00000002956 #18	CCDC83 (ENSDLEG00000002970) #19	PICALM (ENSDLEG00000002993) #20	EED (ENSDLEG00000003117) #21	HIKESHI (ENSDLEG00000003141) #22	CCDC81 (ENSDLEG00000003163) #23	ME3 (ENSDLEG00000003198) #25	PRSS23 (ENSDLEG00000003208) #28	FZD4 (ENSDLEG00000003217) #29	ENSDLEG00000003221	TMEM135 (ENSDLEG00000003226) #30	RAB38 (ENSDLEG00000003249) #31	CTSC (ENSDLEG00000003257) #32	GRM5 (ENSDLEG00000003265) #33	TYR (ENSDLEG00000003283) #35	NOX4 (ENSDLEG00000003303) #36	FOLH1 (ENSDLEG00000003393)	ENSDLEG00000003772
Vaquita	MODERN SPECIES	19	PRCP (ENSPSNG00000021508)	DDIAS (ENSPSNG00000021476)	RAB30 (ENSPSNG00000021453)	PCF11 (ENSPSNG00000021405) #7	ANKRD42 (ENSPSNG00000021372) #8	ENSPSNG00000021348 #11	DLG2 (ENSPSNG00000019221) #13	TMEM126B (ENSPSNG00000018567) #14	ENSPSNG00000018507 #15	CREBZF (ENSPSNG00000018478) #16	CCDC89 (ENSPSNG00000018454) #17	ENSPSNG00000018339 #18	CCDC83 (ENSPSNG00000018191) #19	PICALM (ENSPSNG00000017970) #20	EED (ENSPSNG00000017804) #21	HIKESHI (ENSPSNG00000017703) #22	CCDC81 (ENSPSNG00000017515) #23	ENSPSNG00000017457 #24	ME3 (ENSPSNG00000017348) #25	PRSS23 (ENSPSNG00000017307) #28	FZD4 (ENSPSNG00000017272) #29	ENSPSNG00000017225	TMEM135 (ENSPSNG00000017021) #30	RAB38 (ENSPSNG00000016956) #31	CTSC (ENSPSNG00000016884) #32	GRM5 (ENSPSNG00000016691) #33	TYR (ENSPSNG00000016603) #35	NOX4 (ENSPSNG00000016374) #36	ENSPSNG00000016293	ENSPSNG00000015989	ENSPSNG00000015913
Dolphin	MODERN SPECIES	1901															EED (ENSTTRG00000012266) #21	HIKESHI (ENSTTRG00000012267) #22	CCDC81 (ENSTTRG00000012268) #23	ME3 (ENSTTRG00000012269) #25	PRSS23 (ENSTTRG00000012270) #28
Sperm whale	MODERN SPECIES	7	DDIAS (ENSPCTG00005010514)	RAB30 (ENSPCTG00005010467)	PCF11 (ENSPCTG00005010384) #7	ANKRD42 (ENSPCTG00005010304) #8	CCDC90B (ENSPCTG00005010220) #11	DLG2 (ENSPCTG00005008716) #13	ENSPCTG00005008523	ENSPCTG00005008505	TMEM126B (ENSPCTG00005008472) #14	TMEM126A (ENSPCTG00005008442) #15	CCDC89 (ENSPCTG00005008392) #17	SYTL2 (ENSPCTG00005008215) #18	CCDC83 (ENSPCTG00005008113) #19	PICALM (ENSPCTG00005007605) #20	EED (ENSPCTG00005007433) #21	HIKESHI (ENSPCTG00005007380) #22	CCDC81 (ENSPCTG00005007322) #23	ENSPCTG00005007298 #24	ME3 (ENSPCTG00005007233) #25	PRSS23 (ENSPCTG00005007213) #28	FZD4 (ENSPCTG00005007199) #29	ENSPCTG00005007172	TMEM135 (ENSPCTG00005007056) #30	ENSPCTG00005007024	ENSPCTG00005007012	RAB38 (ENSPCTG00005007000) #31	CTSC (ENSPCTG00005006945) #32	GRM5 (ENSPCTG00005006847) #33	TYR (ENSPCTG00005006804) #35	NOX4 (ENSPCTG00005006689) #36	FOLH1B (ENSPCTG00005006376)
Blue whale	MODERN SPECIES	19	DDIAS (ENSBMSG00010005051)	RAB30 (ENSBMSG00010005043)	PCF11 (ENSBMSG00010005034) #7	ANKRD42 (ENSBMSG00010005024) #8	CCDC90B (ENSBMSG00010005013) #11	ENSBMSG00010005009	DLG2 (ENSBMSG00010002552) #13	TMEM126B (ENSBMSG00010001999) #14	TMEM126A (ENSBMSG00010001985) #15	CREBZF (ENSBMSG00010001973) #16	CCDC89 (ENSBMSG00010001966) #17	SYTL2 (ENSBMSG00010001898) #18	CCDC83 (ENSBMSG00010001838) #19	PICALM (ENSBMSG00010001786) #20	EED (ENSBMSG00010001736) #21	HIKESHI (ENSBMSG00010001721) #22	CCDC81 (ENSBMSG00010001642) #23	ME3 (ENSBMSG00010001610) #25	PRSS23 (ENSBMSG00010001597) #28	FZD4 (ENSBMSG00010001591) #29	ENSBMSG00010001482 #30	RAB38 (ENSBMSG00010001436) #31	CTSC (ENSBMSG00010001420) #32	GRM5 (ENSBMSG00010001371) #33	TYR (ENSBMSG00010001331) #35	NOX4 (ENSBMSG00010000676) #36	FOLH1 (ENSBMSG00010000460)	ENSBMSG00010000378	ENSBMSG00010000367	ENSBMSG00010000341	ENSBMSG00010000316
Pecora	ANCESTRAL SPECIES	13	ENSGT00990000214054	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.k.b	ENSGT00940000163440
Yarkand deer	MODERN SPECIES	11	RAB30 (ENSCHYG00000003380)	PCF11 (ENSCHYG00000003359) #7	ANKRD42 (ENSCHYG00000003347) #8	ENSCHYG00000003340	ENSCHYG00000003307 #11	ENSCHYG00000002869 #13	TMEM126B (ENSCHYG00000002757) #14	ENSCHYG00000002743 #15	CREBZF (ENSCHYG00000002736) #16	CCDC89 (ENSCHYG00000002726) #17	ENSCHYG00000002641 #18	ENSCHYG00000002613	ENSCHYG00000002584 #19	PICALM (ENSCHYG00000001855) #20	EED (ENSCHYG00000001672) #21	HIKESHI (ENSCHYG00000001630) #22	CCDC81 (ENSCHYG00000001578) #23	ENSCHYG00000001557 #24	ENSCHYG00000001541 #26	ENSCHYG00000001536 #11	ME3 (ENSCHYG00000001420) #25	PRSS23 (ENSCHYG00000001379) #28	FZD4 (ENSCHYG00000001366) #29	TMEM135 (ENSCHYG00000001269) #30	RAB38 (ENSCHYG00000001226) #31	CTSC (ENSCHYG00000001169) #32	ENSCHYG00000001133	GRM5 (ENSCHYG00000000979) #33	TYR (ENSCHYG00000000943) #35	NOX4 (ENSCHYG00000000830) #36	FOLH1 (ENSCHYG00000000623)
Percora_a	ANCESTRAL SPECIES	16	ENSGT00990000214054	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.k.b	ENSGT00940000162409.k.a.b
Bovidae	ANCESTRAL SPECIES	16	ENSGT00990000214054	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00960000192014	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.k.b
Caprinae	ANCESTRAL SPECIES	29	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00900000143390	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00960000192014	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163858.e.a.a
Rambouillet Sheep	MODERN SPECIES	13	CCDC90B (ENSOARG00020024361) #11	ENSOARG00020024238 #8	ENSOARG00020024223	ENSOARG00020024191 #19	ENSOARG00020024175 #26	DLG2 (ENSOARG00020016002) #13	TMEM126B (ENSOARG00020015676) #14	TMEM126A (ENSOARG00020015625) #15	CREBZF (ENSOARG00020015588) #16	CCDC89 (ENSOARG00020015557) #17	SYTL2 (ENSOARG00020014519) #18	ENSOARG00020014438	ENSOARG00020014330 #19	PICALM (ENSOARG00020013638) #20	EED (ENSOARG00020012861) #21	HIKESHI (ENSOARG00020012706) #22	ENSOARG00020018700 #24	ME3 (ENSOARG00020018621) #25	ENSOARG00020018554 #26	PRSS23 (ENSOARG00020018547) #28	FZD4 (ENSOARG00020018518) #29	TMEM135 (ENSOARG00020018240) #30	ENSOARG00020018155	RAB38 (ENSOARG00020018125) #31	CTSC (ENSOARG00020017978) #32	ENSOARG00020017848 #33	ENSOARG00020017819	TYR (ENSOARG00020017770) #35	NOX4 (ENSOARG00020017262) #36	ENSOARG00020017199	ENSOARG00020017116
Goat	MODERN SPECIES	21	PCF11 (ENSCHIG00000020954) #7	ANKRD42 (ENSCHIG00000018399) #8	CCDC90B (ENSCHIG00000023161) #11	DLG2 (ENSCHIG00000024691) #13	ENSCHIG00000009761	ENSCHIG00000021811	TMEM126B (ENSCHIG00000013101) #14	ENSCHIG00000026099 #15	CREBZF (ENSCHIG00000005919) #16	CCDC89 (ENSCHIG00000004366) #17	ENSCHIG00000019092 #18	CCDC83 (ENSCHIG00000013675) #19	ENSCHIG00000022640	PICALM (ENSCHIG00000015634) #20	EED (ENSCHIG00000015509) #21	HIKESHI (ENSCHIG00000023660) #22	CCDC81 (ENSCHIG00000016243) #23	ENSCHIG00000002265 #24	ME3 (ENSCHIG00000014285) #25	PRSS23 (ENSCHIG00000010056) #28	FZD4 (ENSCHIG00000026211) #29	ENSCHIG00000019838 #30	ENSCHIG00000013504 #30	RAB38 (ENSCHIG00000024276) #31	CTSC (ENSCHIG00000013901) #32	GRM5 (ENSCHIG00000015813) #33	ENSCHIG00000023687 #33	TYR (ENSCHIG00000004892) #35	NOX4 (ENSCHIG00000021611) #36	FOLH1 (ENSCHIG00000013522)	ENSCHIG00000023324
Bovinae	ANCESTRAL SPECIES	27	ENSGT00440000034259.b #7	ENSGT00990000214054	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00960000192014	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.k.b
Bos	ANCESTRAL SPECIES	11	ENSGT00440000034259.b #7	ENSGT00990000214054	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.a.b	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.k.b
Bos_a	ANCESTRAL SPECIES	66	ENSGT00440000034259.b #7	ENSGT00990000214054	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.a.b	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.k.b
Domestic yak	MODERN SPECIES	21	DLG2 (ENSBGRG00000022447) #13	ENSBGRG00000023913	ENSBGRG00000023931	ENSBGRG00000023962	ENSBGRG00000023993	ENSBGRG00000024005	ENSBGRG00000024013	TMEM126B (ENSBGRG00000024037) #14	ENSBGRG00000024097 #15	CREBZF (ENSBGRG00000024210) #16	CCDC89 (ENSBGRG00000024223) #17	ENSBGRG00000024253 #18	CCDC83 (ENSBGRG00000024540) #19	PICALM (ENSBGRG00000024679) #20	EED (ENSBGRG00000025126) #21	HIKESHI (ENSBGRG00000025330) #22	CCDC81 (ENSBGRG00000025357) #23	ME3 (ENSBGRG00000025466) #25	ENSBGRG00000025555 #24	ENSBGRG00000025562 #26	PRSS23 (ENSBGRG00000025570) #28	FZD4 (ENSBGRG00000025585) #29	TMEM135 (ENSBGRG00000025613) #30	RAB38 (ENSBGRG00000025707) #31	CTSC (ENSBGRG00000025732) #32	GRM5 (ENSBGRG00000025754) #33	ENSBGRG00000025770 #33	ENSBGRG00000025774 #35	ENSBGRG00000013459 #35	NOX4 (ENSBGRG00000013584) #36	FOLH1 (ENSBGRG00000013892)
Wild yak	MODERN SPECIES	1529													CCDC83 (ENSBMUG00000019367) #19	PICALM (ENSBMUG00000019285) #20	EED (ENSBMUG00000019111) #21	HIKESHI (ENSBMUG00000019057) #22	CCDC81 (ENSBMUG00000019021) #23	ENSBMUG00000018940 #24	ME3 (ENSBMUG00000018926) #25	FZD4 (ENSBMUG00000018882) #29
Bos_b	ANCESTRAL SPECIES	10	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01000000214875	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01100000263506.a.e.a.a.a.b.b.a.b.a.a.a.b	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000162409.k.b
Cow	MODERN SPECIES	21	RAB30 (ENSBTAG00000002417)	PCF11 (ENSBTAG00000015277) #7	ANKRD42 (ENSBTAG00000001391) #8	CCDC90B (ENSBTAG00000007479) #11	ENSBTAG00000048705	DLG2 (ENSBTAG00000027868) #13	ENSBTAG00000053418	TMEM126B (ENSBTAG00000020596) #14	TMEM126A (ENSBTAG00000000451) #15	CREBZF (ENSBTAG00000000455) #16	CCDC89 (ENSBTAG00000000457) #17	SYTL2 (ENSBTAG00000000460) #18	CCDC83 (ENSBTAG00000011132) #19	PICALM (ENSBTAG00000001657) #20	EED (ENSBTAG00000007847) #21	HIKESHI (ENSBTAG00000019995) #22	CCDC81 (ENSBTAG00000020009) #23	ENSBTAG00000046374 #24	ME3 (ENSBTAG00000000246) #25	PRSS23 (ENSBTAG00000015177) #28	FZD4 (ENSBTAG00000040128) #29	TMEM135 (ENSBTAG00000005482) #30	ENSBTAG00000050697	ENSBTAG00000049723	RAB38 (ENSBTAG00000015793) #31	CTSC (ENSBTAG00000011100) #32	ENSBTAG00000034845	GRM5 (ENSBTAG00000048061) #33	TYR (ENSBTAG00000011813) #35	NOX4 (ENSBTAG00000018540) #36	FOLH1B (ENSBTAG00000007397)
Hybrid Bos Indicus	MODERN SPECIES	21	ANKRD42 (ENSBIXG00005019460) #8	CCDC90B (ENSBIXG00005003146) #11	DLG2 (ENSBIXG00005000048) #13	ENSBIXG00005016035	ENSBIXG00005016027	ENSBIXG00005007506	ENSBIXG00005015966	TMEM126B (ENSBIXG00005006137) #14	TMEM126A (ENSBIXG00005015931) #15	CREBZF (ENSBIXG00005015909) #16	CCDC89 (ENSBIXG00005002504) #17	ENSBIXG00005015861 #18	CCDC83 (ENSBIXG00005015679) #19	PICALM (ENSBIXG00005015588) #20	EED (ENSBIXG00005015358) #21	HIKESHI (ENSBIXG00005015272) #22	CCDC81 (ENSBIXG00005015221) #23	ENSBIXG00005015176 #24	ME3 (ENSBIXG00005015127) #25	ENSBIXG00005006228 #26	PRSS23 (ENSBIXG00005015048) #28	FZD4 (ENSBIXG00005002201) #29	TMEM135 (ENSBIXG00005007500) #30	ENSBIXG00005014836	ENSBIXG00005006132	ENSBIXG00005014818	RAB38 (ENSBIXG00005014802) #31	CTSC (ENSBIXG00005005707) #32	ENSBIXG00005014734 #33	ENSBIXG00005002053	ENSBIXG00005014663 #33
American bison	MODERN SPECIES	3238	RAB30 (ENSBBBG00000019557)	PCF11 (ENSBBBG00000007044) #7	ANKRD42 (ENSBBBG00000019636) #8	CCDC90B (ENSBBBG00000019665) #11	DLG2 (ENSBBBG00000007047) #13	ENSBBBG00000008368	ENSBBBG00000008951	ENSBBBG00000020046 #14	TMEM126A (ENSBBBG00000005096) #15	CREBZF (ENSBBBG00000005090) #16	CCDC89 (ENSBBBG00000005086) #17	ENSBBBG00000020192 #18	CCDC83 (ENSBBBG00000005453) #19	PICALM (ENSBBBG00000006910) #20	EED (ENSBBBG00000000678) #21	HIKESHI (ENSBBBG00000000640) #22	CCDC81 (ENSBBBG00000000571) #23	ENSBBBG00000000561 #24	ME3 (ENSBBBG00000000531) #25	PRSS23 (ENSBBBG00000000524) #28	FZD4 (ENSBBBG00000005521) #29
Siberian musk deer	MODERN SPECIES	334							DLG2 (ENSMMSG00000012131) #13	TMEM126B (ENSMMSG00000011791) #14	TMEM126A (ENSMMSG00000011765) #15	CREBZF (ENSMMSG00000011747) #16	CCDC89 (ENSMMSG00000011737) #17	ENSMMSG00000011390 #18	CCDC83 (ENSMMSG00000011291) #19	PICALM (ENSMMSG00000010915) #20	EED (ENSMMSG00000010761) #21	HIKESHI (ENSMMSG00000010677) #22	CCDC81 (ENSMMSG00000010200) #23	ENSMMSG00000010151	ENSMMSG00000010131 #26	ME3 (ENSMMSG00000010096) #25	PRSS23 (ENSMMSG00000010081) #28	FZD4 (ENSMMSG00000010064) #29	TMEM135 (ENSMMSG00000009825) #30	RAB38 (ENSMMSG00000009772) #31	CTSC (ENSMMSG00000009733) #32	GRM5 (ENSMMSG00000009613) #33	TYR (ENSMMSG00000009581) #35	NOX4 (ENSMMSG00000009089) #36	FOLH1 (ENSMMSG00000008725)	ENSMMSG00000008663	ENSMMSG00000008585
Camelidae	ANCESTRAL SPECIES	32	ENSGT01030000234618.D	ENSGT01030000234566.e.b.b.a	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000163440	ENSGT00940000160005.B	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b
Alpaca	MODERN SPECIES	1954										TMEM126B (ENSVPAG00000001715) #14	TMEM126A (ENSVPAG00000001716) #15	SYTL2 (ENSVPAG00000001719) #18	CCDC83 (ENSVPAG00000001720) #19	PICALM (ENSVPAG00000001721) #20	EED (ENSVPAG00000001723) #21	HIKESHI (ENSVPAG00000001725) #22	CCDC81 (ENSVPAG00000001728) #23
Arabian camel	MODERN SPECIES	1	RAB30 (ENSCDRG00005000271)	PCF11 (ENSCDRG00005000302) #7	ANKRD42 (ENSCDRG00005000336) #8	CCDC90B (ENSCDRG00005000363) #11	ENSCDRG00005000387	DLG2 (ENSCDRG00005000832) #13	TMEM126B (ENSCDRG00005005932) #14	ENSCDRG00005005974 #15	CREBZF (ENSCDRG00005006000) #16	ENSCDRG00005006034	CCDC89 (ENSCDRG00005006041) #17	SYTL2 (ENSCDRG00005006073) #18	CCDC83 (ENSCDRG00005006299) #19	PICALM (ENSCDRG00005006440) #20	EED (ENSCDRG00005007103) #21	HIKESHI (ENSCDRG00005007926) #22	CCDC81 (ENSCDRG00005008087) #23	ENSCDRG00005008636	ME3 (ENSCDRG00005008675) #25	PRSS23 (ENSCDRG00005008761) #28	FZD4 (ENSCDRG00005008783) #29	TMEM135 (ENSCDRG00005008846) #30	RAB38 (ENSCDRG00005009241) #31	CTSC (ENSCDRG00005009321) #32	GRM5 (ENSCDRG00005009561) #33	TYR (ENSCDRG00005009674) #35	NOX4 (ENSCDRG00005009765) #36	FOLH1 (ENSCDRG00005010235)	ENSCDRG00005010410	ENSCDRG00005010499	ENSCDRG00005011110
Suina	ANCESTRAL SPECIES	5	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00940000164723 #24	ENSGT00950000183134.c.a.a #25	ENSGT00900000143351 #26	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000160005.A	ENSGT00940000162409
Pig	MODERN SPECIES	17	RAB30 (ENSSSCG00000014900)	PCF11 (ENSSSCG00000014901) #7	ANKRD42 (ENSSSCG00000014902) #8	CCDC90B (ENSSSCG00000014903) #11	DLG2 (ENSSSCG00000014904) #13	TMEM126B (ENSSSCG00000014905) #14	TMEM126A (ENSSSCG00000025187) #15	CREBZF (ENSSSCG00000014907) #16	CCDC89 (ENSSSCG00000062997) #17	SYTL2 (ENSSSCG00000014909) #18	ENSSSCG00000059638	ENSSSCG00000014911	CCDC83 (ENSSSCG00000014912) #19	PICALM (ENSSSCG00000014913) #20	EED (ENSSSCG00000014915) #21	HIKESHI (ENSSSCG00000021210) #22	CCDC81 (ENSSSCG00000014917) #23	ENSSSCG00000047749	ENSSSCG00000014918 #24	ME3 (ENSSSCG00000014919) #25	PRSS23 (ENSSSCG00000014921) #28	FZD4 (ENSSSCG00000014920) #29	TMEM135 (ENSSSCG00000035619) #30	RAB38 (ENSSSCG00000033878) #31	CTSC (ENSSSCG00000014924) #32	GRM5 (ENSSSCG00000029865) #33	ENSSSCG00000052702	TYR (ENSSSCG00000026409) #35	NOX4 (ENSSSCG00000014927) #36	FOLH1B (ENSSSCG00000027093)	ENSSSCG00000028810
Chacoan peccary	MODERN SPECIES	31	DDIAS (ENSCWAG00000000327)	PRCP (ENSCWAG00000000285)	RAB30 (ENSCWAG00000000258)	PCF11 (ENSCWAG00000000220) #7	ANKRD42 (ENSCWAG00000000170) #8	CCDC90B (ENSCWAG00000015330) #11	DLG2 (ENSCWAG00000005957) #13	TMEM126B (ENSCWAG00000005630) #14	TMEM126A (ENSCWAG00000005609) #15	CREBZF (ENSCWAG00000005594) #16	CCDC89 (ENSCWAG00000005581) #17	SYTL2 (ENSCWAG00000005345) #18	CCDC83 (ENSCWAG00000005253) #19	PICALM (ENSCWAG00000005113) #20	EED (ENSCWAG00000004971) #21	HIKESHI (ENSCWAG00000004933) #22	CCDC81 (ENSCWAG00000004701) #23	ENSCWAG00000004652 #24	ME3 (ENSCWAG00000004613) #25	ENSCWAG00000004584 #26	PRSS23 (ENSCWAG00000004567) #28	FZD4 (ENSCWAG00000004556) #29
Atlantogenata	ANCESTRAL SPECIES	35	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00940000155156.a.b ##13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000160005.B	ENSGT00940000160005.A	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b
Xenarthra	ANCESTRAL SPECIES	1436																ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25
Sloth	MODERN SPECIES	3998																HIKESHI (ENSCHOG00000000327) #22
Armadillo	MODERN SPECIES	1234														ENSDNOG00000001629 #21	ENSDNOG00000047705	HIKESHI (ENSDNOG00000036375) #22	CCDC81 (ENSDNOG00000044311) #23	ME3 (ENSDNOG00000008517) #25
Afrotheria	ANCESTRAL SPECIES	41	ENSGT01030000234566.e.b.b.a	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00940000160005.B	ENSGT00940000160005.A	ENSGT00940000163858
Tenrec	MODERN SPECIES	4381																ENSETEG00000016058 #22
Afrotheria_a	ANCESTRAL SPECIES	120	ENSGT01030000234566.e.b.b.a	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a
Elephant	MODERN SPECIES	486	PRCP (ENSLAFG00000008730)	DDIAS (ENSLAFG00000008583)	RAB30 (ENSLAFG00000010711)	PCF11 (ENSLAFG00000000623) #7	ANKRD42 (ENSLAFG00000021802) #8	ENSLAFG00000015417 #11	ENSLAFG00000010836 #13	ENSLAFG00000030347 #13	TMEM126A (ENSLAFG00000022847) #15	CREBZF (ENSLAFG00000014649) #16	CCDC89 (ENSLAFG00000017161) #17	ENSLAFG00000023353 #18	ENSLAFG00000000753 #19	PICALM (ENSLAFG00000000754) #20	EED (ENSLAFG00000002676) #21	HIKESHI (ENSLAFG00000009125) #22	CCDC81 (ENSLAFG00000002978) #23	ME3 (ENSLAFG00000006856) #25	PRSS23 (ENSLAFG00000004876) #28	ENSLAFG00000031157	FZD4 (ENSLAFG00000007383) #29	TMEM135 (ENSLAFG00000000851) #30	RAB38 (ENSLAFG00000032135) #31	CTSC (ENSLAFG00000000890) #32	ENSLAFG00000032092 #33	ENSLAFG00000004534 #33	TYR (ENSLAFG00000016209) #35	NOX4 (ENSLAFG00000016618) #36	FOLH1 (ENSLAFG00000010953)	ENSLAFG00000023298	ENSLAFG00000011083
Hyrax	MODERN SPECIES	3659																HIKESHI (ENSPCAG00000008159) #22	CCDC81 (ENSPCAG00000008192) #23
Marsupialia	ANCESTRAL SPECIES	28	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b.z #13	ENSGT00940000155156.b.y #13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a
Marsupialia_b	ANCESTRAL SPECIES	20	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453.ab #11	ENSGT00940000155156.b.z #13	ENSGT00940000155156.b.y #13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00950000183097.a.a.b	ENSGT00940000173214	ENSGT00940000173288	ENSGT00940000160585
Tasmanian devil	MODERN SPECIES	2	ANKRD42 (ENSSHAG00000017684) #8	CCDC90B (ENSSHAG00000001413) #11	ENSSHAG00000032256	DLG2 (ENSSHAG00000025318) #13	ENSSHAG00000028016	ENSSHAG00000025462	ENSSHAG00000029253	ENSSHAG00000025603 #14	TMEM126A (ENSSHAG00000027315) #15	CREBZF (ENSSHAG00000026899) #16	CCDC89 (ENSSHAG00000004068) #17	ENSSHAG00000000874 #18	CCDC83 (ENSSHAG00000006672) #19	PICALM (ENSSHAG00000004629) #20	EED (ENSSHAG00000013554) #21	ENSSHAG00000013345 #22	CCDC81 (ENSSHAG00000012907) #23	ME3 (ENSSHAG00000011265) #25	PRSS23 (ENSSHAG00000010219) #28	FZD4 (ENSSHAG00000009486) #29	TMEM135 (ENSSHAG00000005028) #30	RAB38 (ENSSHAG00000001883) #31	CTSC (ENSSHAG00000021775) #32	GRM5 (ENSSHAG00000005876) #33	TYR (ENSSHAG00000003407) #35	ENSSHAG00000004938 #36	ENSSHAG00000002531	ENSSHAG00000002301	ENSSHAG00000031322	ENSSHAG00000013328	ENSSHAG00000030777
Diprotodontia	ANCESTRAL SPECIES	24	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453.ab #11	ENSGT00940000155156.b.z #13	ENSGT00940000155156.b.y #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00950000183097.a.a.b	ENSGT00940000173214	ENSGT00940000173288	ENSGT00940000160585
Diprotodontia_a	ANCESTRAL SPECIES	25	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453.ab #11	ENSGT00940000155156.b.z #13	ENSGT00940000155156.b.y #13	ENSGT00520000055616.b #14	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT00950000183097.a.a.b	ENSGT00940000173214	ENSGT00940000173288	ENSGT00940000160585
koala	MODERN SPECIES	53	RAB30 (ENSPCIG00000027547)	PCF11 (ENSPCIG00000027546) #7	ANKRD42 (ENSPCIG00000027545) #8	CCDC90B (ENSPCIG00000027544) #11	ENSPCIG00000032781	ENSPCIG00000028928 #13	ENSPCIG00000028927 #13	ENSPCIG00000018835 #14	ENSPCIG00000018836 #15	CREBZF (ENSPCIG00000018837) #16	CCDC89 (ENSPCIG00000018839) #17	ENSPCIG00000018840 #18	CCDC83 (ENSPCIG00000018849) #19	PICALM (ENSPCIG00000018862) #20	EED (ENSPCIG00000018888) #21	HIKESHI (ENSPCIG00000018890) #22	CCDC81 (ENSPCIG00000018892) #23	ENSPCIG00000018899 #25	ENSPCIG00000036562 #25	ENSPCIG00000018908 #12	PRSS23 (ENSPCIG00000018910) #28	FZD4 (ENSPCIG00000018913) #29	TMEM135 (ENSPCIG00000027278) #30	RAB38 (ENSPCIG00000002044) #31	CTSC (ENSPCIG00000024375) #32	GRM5 (ENSPCIG00000024373) #33	ENSPCIG00000024370 #33	TYR (ENSPCIG00000024368) #35	NOX4 (ENSPCIG00000011154) #36	FOLH1 (ENSPCIG00000018760)	ENSPCIG00000015183
Common wonbat	MODERN SPECIES	342	RAB30 (ENSVURG00010006644)	PCF11 (ENSVURG00010006617) #7	ANKRD42 (ENSVURG00010006605) #8	ENSVURG00010006592 #11	ENSVURG00010006557 #11	ENSVURG00010006518 #13	ENSVURG00010006473 #13	ENSVURG00010006456 #14	TMEM126A (ENSVURG00010006451) #15	CREBZF (ENSVURG00010006446) #16	CCDC89 (ENSVURG00010006440) #17	ENSVURG00010006353 #18	PICALM (ENSVURG00010006226) #20	EED (ENSVURG00010006129) #21	ENSVURG00010006114	ENSVURG00010006106 #22	CCDC81 (ENSVURG00010006061) #23	ME3 (ENSVURG00010006020) #25	PRSS23 (ENSVURG00010005981) #28	FZD4 (ENSVURG00010005964) #29	TMEM135 (ENSVURG00010005930) #30	ENSVURG00010005908 #31	CTSC (ENSVURG00010005899) #32	TYR (ENSVURG00010005865) #35	NOX4 (ENSVURG00010005832) #36	ENSVURG00010000640	LCP1 (ENSVURG00010023528)	ENSVURG00010023527	RUBCNL (ENSVURG00010023522)	LRCH1 (ENSVURG00010023509)	ENSVURG00010023498
Opossum	MODERN SPECIES	3	RAB30 (ENSMODG00000042391)	PCF11 (ENSMODG00000004498) #7	ANKRD42 (ENSMODG00000004477) #8	CCDC90B (ENSMODG00000004456) #11	ENSMODG00000004436 #13	ENSMODG00000006441 #13	ENSMODG00000045316	ENSMODG00000037216	TMEM126A (ENSMODG00000004384) #15	CREBZF (ENSMODG00000004377) #16	ENSMODG00000004359 #18	ENSMODG00000048166 #18	CCDC83 (ENSMODG00000004311) #19	PICALM (ENSMODG00000004297) #20	EED (ENSMODG00000004253) #21	HIKESHI (ENSMODG00000039483) #22	CCDC81 (ENSMODG00000004183) #23	ME3 (ENSMODG00000004158) #25	PRSS23 (ENSMODG00000041673) #28	FZD4 (ENSMODG00000004102) #29	ENSMODG00000024072	TMEM135 (ENSMODG00000004087) #30	ENSMODG00000035809	ENSMODG00000024094	ENSMODG00000028786	LCP1 (ENSMODG00000011413)	ENSMODG00000011358	ENSMODG00000029107	LRCH1 (ENSMODG00000011348)	ESD (ENSMODG00000011290)	HTR2A (ENSMODG00000011274)
Platypus	MODERN SPECIES	12	TENM4 (ENSOANG00000050564)	ENSOANG00000036733	PRCP (ENSOANG00000011106)	RAB30 (ENSOANG00000014498)	PCF11 (ENSOANG00000006552) #7	ANKRD42 (ENSOANG00000008014) #8	CCDC90B (ENSOANG00000045474) #11	DLG2 (ENSOANG00000038643) #13	ENSOANG00000013210 #14	ENSOANG00000013209 #15	CCDC89 (ENSOANG00000013208) #17	ENSOANG00000013207 #18	ENSOANG00000013206 #19	PICALM (ENSOANG00000013205) #20	EED (ENSOANG00000008884) #21	HIKESHI (ENSOANG00000038507) #22	CCDC81 (ENSOANG00000008880) #23	ME3 (ENSOANG00000008877) #25	PRSS23 (ENSOANG00000008876) #28	FZD4 (ENSOANG00000008874) #29	TMEM135 (ENSOANG00000008873) #30	RAB38 (ENSOANG00000008872) #31	CTSC (ENSOANG00000043869) #32	GRM5 (ENSOANG00000008870) #33	TYR (ENSOANG00000008868) #35	NOX4 (ENSOANG00000008867) #36	FOLH1 (ENSOANG00000004606)	NAALAD2 (ENSOANG00000004605)	CHORDC1 (ENSOANG00000043552)	FAT3 (ENSOANG00000011705)	ENSOANG00000042265
Sauria	ANCESTRAL SPECIES	2	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00940000155156.a.b ##13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981
Lepidosauria	ANCESTRAL SPECIES	17	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00940000155156.a.b ##13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981
Episquamata	ANCESTRAL SPECIES	2	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00940000155156.a.b ##13	ENSGT01000000214875	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341
Toxicofera	ANCESTRAL SPECIES	9	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00940000155156.a.b ##13	ENSGT01000000214875	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341
Elapidae	ANCESTRAL SPECIES	10	ENSGT00940000165087	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01000000214875	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787.m #32	ENSGT00940000155787.n #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b.i	ENSGT00940000154174	ENSGT00940000154981
Indian cobra	MODERN SPECIES	4	PRCP (ENSNNAG00000007309)	RAB30 (ENSNNAG00000007200)	PCF11 (ENSNNAG00000007053) #7	ANKRD42 (ENSNNAG00000006940) #8	CCDC90B (ENSNNAG00000006911) #11	ENSNNAG00000006872 ##13	ENSNNAG00000006844 ##13	ENSNNAG00000006824	ENSNNAG00000006814	TMEM126A (ENSNNAG00000006796) #15	CCDC89 (ENSNNAG00000006775) #17	ENSNNAG00000006760 #18	PICALM (ENSNNAG00000006381) #20	ENSNNAG00000006310 #21	ENSNNAG00000006304 #21	HIKESHI (ENSNNAG00000006290) #22	CCDC81 (ENSNNAG00000006203) #23	ENSNNAG00000006162 #25	ENSNNAG00000006142 #25	PRSS23 (ENSNNAG00000006135) #28	FZD4 (ENSNNAG00000006121) #29	ENSNNAG00000006106 #30	ENSNNAG00000006047 #30	ENSNNAG00000006022 #30	ENSNNAG00000006003	ENSNNAG00000005993 #32	ENSNNAG00000005985 #32	GRM5 (ENSNNAG00000005247) #33	TYR (ENSNNAG00000005074) #35	NOX4 (ENSNNAG00000005040) #36	FOLH1 (ENSNNAG00000004877)
Elapidae_a	ANCESTRAL SPECIES	41	ENSGT00940000165087	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a.k #8	ENSGT00940000155453 #11	ENSGT00940000155156.b.vb #13	ENSGT01000000214875	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a.b #25	ENSGT00950000183134.c.a.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787.m #32	ENSGT00940000155787.n #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b.i	ENSGT00940000154174
Acanthophiinae	ANCESTRAL SPECIES	42	ENSGT00940000158099	ENSGT00940000165087	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a.k #8	ENSGT00940000155453 #11	ENSGT00940000155156.b.vb #13	ENSGT01000000214875	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a.b #25	ENSGT00950000183134.c.a.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787.m #32	ENSGT00940000155787.n #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b.i	ENSGT00940000154174
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	135	ENSNSUG00000018618	FAM181B (ENSNSUG00000018617)	RAB30 (ENSNSUG00000018615)	PCF11 (ENSNSUG00000018614) #7	ENSNSUG00000018613 #8	ENSNSUG00000018612 #8	CCDC90B (ENSNSUG00000018611) #11	DLG2 (ENSNSUG00000018608) #13	ENSNSUG00000018605	TMEM126A (ENSNSUG00000018604) #15	CREBZF (ENSNSUG00000018603) #16	CCDC89 (ENSNSUG00000018602) #17	ENSNSUG00000018601 #18	PICALM (ENSNSUG00000018598) #20	EED (ENSNSUG00000018585) #21	ENSNSUG00000018580 #22	CCDC81 (ENSNSUG00000018575) #23	ME3 (ENSNSUG00000018568) #25	PRSS23 (ENSNSUG00000018564) #28	FZD4 (ENSNSUG00000018563) #29	TMEM135 (ENSNSUG00000018562) #30
Mainland tiger snake	MODERN SPECIES	126									ENSNSUG00000008521	SGMS1 (ENSNSUG00000008528)	A1CF (ENSNSUG00000008529)	ENSNSUG00000008530	ENSNSUG00000008531	ENSNSUG00000008532	DKK1 (ENSNSUG00000008533)	ENSNSUG00000008534 #22	PCDH15 (ENSNSUG00000008535)	ENSNSUG00000008684
Eastern brown snake	MODERN SPECIES	33	PRCP (ENSPTXG00000003190)	ENSPTXG00000003563	RAB30 (ENSPTXG00000003564)	PCF11 (ENSPTXG00000003566) #7	ENSPTXG00000003568 #8	CCDC90B (ENSPTXG00000003570) #11	DLG2 (ENSPTXG00000003776) #13	ENSPTXG00000003779	TMEM126A (ENSPTXG00000003780) #15	CREBZF (ENSPTXG00000003782) #16	CCDC89 (ENSPTXG00000000099) #17	SYTL2 (ENSPTXG00000000140) #18	CCDC83 (ENSPTXG00000000218) #19	PICALM (ENSPTXG00000000248) #20	EED (ENSPTXG00000000288) #21	HIKESHI (ENSPTXG00000000303) #22	CCDC81 (ENSPTXG00000000350) #23	ME3 (ENSPTXG00000001185) #25	PRSS23 (ENSPTXG00000001186) #28	FZD4 (ENSPTXG00000001190) #29	TMEM135 (ENSPTXG00000001194) #30	RAB38 (ENSPTXG00000001201) #31	CTSC (ENSPTXG00000001207) #32	GRM5 (ENSPTXG00000001252) #33	TYR (ENSPTXG00000002601) #35	NOX4 (ENSPTXG00000002912) #36	FOLH1 (ENSPTXG00000002913)	NAALAD2 (ENSPTXG00000003043)	CHORDC1 (ENSPTXG00000004173)	FAT3 (ENSPTXG00000004176)	MTNR1B (ENSPTXG00000004180)
Blue-lipped sea krait	MODERN SPECIES	4642															EED (ENSLLTG00000008862) #21	HIKESHI (ENSLLTG00000008968) #22	CCDC81 (ENSLLTG00000008980) #23	ENSLLTG00000009021 #25
Lizard	MODERN SPECIES	2	RAB30 (ENSACAG00000001098)	ANKRD42 (ENSACAG00000001390) #8	CCDC90B (ENSACAG00000001469) #11	ENSACAG00000041050	ENSACAG00000001627 #13	ENSACAG00000039241 ##13	TMEM126A (ENSACAG00000001894) #15	CREBZF (ENSACAG00000044560) #16	CCDC89 (ENSACAG00000027099) #17	ENSACAG00000001917 #18	CCDC83 (ENSACAG00000002001) #19	PICALM (ENSACAG00000002037) #20	ENSACAG00000028726	EED (ENSACAG00000002420) #21	CCDC81 (ENSACAG00000002561) #23	HIKESHI (ENSACAG00000039755) #22	ME3 (ENSACAG00000002632) #25	ENSACAG00000043722	PRSS23 (ENSACAG00000002734) #28	FZD4 (ENSACAG00000002739) #29	TMEM135 (ENSACAG00000034771) #30	CTSC (ENSACAG00000015158) #32	GRM5 (ENSACAG00000015032) #33	TYR (ENSACAG00000014963) #35	ENSACAG00000044205	NOX4 (ENSACAG00000014875) #36	ENSACAG00000014644	ENSACAG00000037169	NAALAD2 (ENSACAG00000014471)	CHORDC1 (ENSACAG00000014370)	ENSACAG00000024003
Laterata	ANCESTRAL SPECIES	3	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT00940000155156.a.b ##13	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341
Common wall lizard	MODERN SPECIES	12	PRCP (ENSPMRG00000001884)	ENSPMRG00000001893	RAB30 (ENSPMRG00000001899)	PCF11 (ENSPMRG00000001908) #7	ANKRD42 (ENSPMRG00000001939) #8	CCDC90B (ENSPMRG00000001968) #11	ENSPMRG00000002057 #13	ENSPMRG00000002191	ENSPMRG00000002194 ##13	TMEM126A (ENSPMRG00000002199) #15	CCDC89 (ENSPMRG00000002202) #17	ENSPMRG00000002209 #18	CCDC83 (ENSPMRG00000002226) #19	PICALM (ENSPMRG00000002250) #20	EED (ENSPMRG00000002299) #21	HIKESHI (ENSPMRG00000002304) #22	CCDC81 (ENSPMRG00000002312) #23	ME3 (ENSPMRG00000002329) #25	PRSS23 (ENSPMRG00000002350) #28	FZD4 (ENSPMRG00000002357) #29	TMEM135 (ENSPMRG00000002367) #30	RAB38 (ENSPMRG00000002382) #31	CTSC (ENSPMRG00000002387) #32	GRM5 (ENSPMRG00000002393) #33	TYR (ENSPMRG00000002408) #35	NOX4 (ENSPMRG00000002424) #36	FOLH1 (ENSPMRG00000002456)	CHORDC1 (ENSPMRG00000002476)	ENSPMRG00000002487	ENSPMRG00000002494	ENSPMRG00000002498
Argentine black and white tegu	MODERN SPECIES	24	ENSSMRG00000007581	RAB30 (ENSSMRG00000007583)	PCF11 (ENSSMRG00000007588) #7	ANKRD42 (ENSSMRG00000007597) #8	CCDC90B (ENSSMRG00000007607) #11	ENSSMRG00000007618	ENSSMRG00000007646 #13	ENSSMRG00000009413 ##13	TMEM126A (ENSSMRG00000009417) #15	CREBZF (ENSSMRG00000009418) #16	CCDC89 (ENSSMRG00000009419) #17	ENSSMRG00000009420 #18	CCDC83 (ENSSMRG00000009455) #19	PICALM (ENSSMRG00000009456) #20	EED (ENSSMRG00000009469) #21	HIKESHI (ENSSMRG00000009470) #22	CCDC81 (ENSSMRG00000009482) #23	ME3 (ENSSMRG00000009483) #25	ENSSMRG00000009486	PRSS23 (ENSSMRG00000009512) #28	FZD4 (ENSSMRG00000009513) #29	TMEM135 (ENSSMRG00000009520) #30	ENSSMRG00000009534	RAB38 (ENSSMRG00000009551) #31	CTSC (ENSSMRG00000009552) #32	GRM5 (ENSSMRG00000009569) #33	TYR (ENSSMRG00000009675) #35	NOX4 (ENSSMRG00000009686) #36	FOLH1 (ENSSMRG00000009691)	NAALAD2 (ENSSMRG00000009705)	CHORDC1 (ENSSMRG00000009707)
tuatara	MODERN SPECIES	1945								ENSSPUG00000012759 #13	ENSSPUG00000012740 #13	ENSSPUG00000012730	TMEM126A (ENSSPUG00000012722) #15	CCDC89 (ENSSPUG00000012713) #17	ENSSPUG00000012663 #18	PICALM (ENSSPUG00000012595) #20	EED (ENSSPUG00000012553) #21	HIKESHI (ENSSPUG00000012540) #22	CCDC81 (ENSSPUG00000012453) #23	ME3 (ENSSPUG00000012403) #25	PRSS23 (ENSSPUG00000012392) #28	ENSSPUG00000012370 #30	ENSSPUG00000012350 #30	ENSSPUG00000012342 #30	ENSSPUG00000012321
Archelosauria	ANCESTRAL SPECIES		ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00940000155156.a.b ##13	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981
Cryptodira	ANCESTRAL SPECIES		ENSGT00940000165087	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01030000234954	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981
Testudinoidea	ANCESTRAL SPECIES	1	ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01030000234954	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174.a	ENSGT00940000154981
Testudinidae	ANCESTRAL SPECIES		ENSGT00940000158099	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01030000234954	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00960000190865	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00950000185226	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b
Goode s thornscrub tortoise	DUPLICATION
Goode s thornscrub tortoise	MODERN SPECIES		PRCP (ENSGEVG00005001811)	DDIAS (ENSGEVG00005001827)	RAB30 (ENSGEVG00005001843)	PCF11 (ENSGEVG00005001855) #7	ENSGEVG00005001874 #8	ENSGEVG00005001886 #8	CCDC90B (ENSGEVG00005001904) #11	DLG2 (ENSGEVG00005001935) #13	ENSGEVG00005002025	TMEM126A (ENSGEVG00005002036) #15	CREBZF (ENSGEVG00005002049) #16	CCDC89 (ENSGEVG00005002061) #17	SYTL2 (ENSGEVG00005002100) #18	PICALM (ENSGEVG00005002184) #20	EED (ENSGEVG00005002273) #21	ENSGEVG00005002287 #22	CCDC81 (ENSGEVG00005002301) #23	ME3 (ENSGEVG00005002332) #25	ENSGEVG00005002358	ENSGEVG00005002369	PRSS23 (ENSGEVG00005002374) #28	FZD4 (ENSGEVG00005002383) #29	TMEM135 (ENSGEVG00005002398) #30	RAB38 (ENSGEVG00005002424) #31	CTSC (ENSGEVG00005002445) #32	GRM5 (ENSGEVG00005002494) #33	TYR (ENSGEVG00005002619) #35	ENSGEVG00005002630	NOX4 (ENSGEVG00005002640) #36	ENSGEVG00005002656	ENSGEVG00005002661
Goode s thornscrub tortoise	MODERN SPECIES	19	SPATA5 (ENSGEVG00005012635)	NUDT6 (ENSGEVG00005013732)	FGF2 (ENSGEVG00005013752)	ENSGEVG00005014094	IL21 (ENSGEVG00005014222)	ADAD1 (ENSGEVG00005014263)	BLTP1 (ENSGEVG00005014528)	TRPC3 (ENSGEVG00005015627)	BBS7 (ENSGEVG00005015692)	ENSGEVG00005015999	CCNA2 (ENSGEVG00005016027)	EXOSC9 (ENSGEVG00005016149)	ANXA5 (ENSGEVG00005016203)	QRFPR (ENSGEVG00005016259)	ENSGEVG00005016441	ENSGEVG00005016470 #22	NDNF (ENSGEVG00005016490)	PRDM5 (ENSGEVG00005016679)	MAD2L1 (ENSGEVG00005017277)	RPL7L1 (ENSGEVG00005017295)	PDE5A (ENSGEVG00005017370)	FABP2 (ENSGEVG00005017699)	ENSGEVG00005017718	USP53 (ENSGEVG00005017738)	MYOZ2 (ENSGEVG00005017774)	SEC24D (ENSGEVG00005018104)	METTL14 (ENSGEVG00005018566)	PRSS12 (ENSGEVG00005018592)	NDST3 (ENSGEVG00005018685)	ENSGEVG00005018731	NDST4 (ENSGEVG00005018749)
Abingdon island giant tortoise	MODERN SPECIES	2453						ENSCABG00000019849	GCLC (ENSCABG00000019845)	ELOVL5 (ENSCABG00000019838)	GCM1 (ENSCABG00000019835)	FBXO9 (ENSCABG00000019830)	CILK1 (ENSCABG00000019810)	ENSCABG00000019808	ENSCABG00000019687	ENSCABG00000019612	EED (ENSCABG00000019569) #21	HIKESHI (ENSCABG00000019563) #22	CCDC81 (ENSCABG00000019555) #23	ENSCABG00000019551 #25	ENSCABG00000019550 #25	ENSCABG00000019549	PRSS23 (ENSCABG00000019546) #28
Emydidae	ANCESTRAL SPECIES	19	ENSGT00390000014932	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01030000234954	ENSGT00940000155156.a.b ##13	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787.o #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174.a	ENSGT00940000154981
Three-toed box turtle	MODERN SPECIES	41	RAB30 (ENSTMTG00000016291)	ENSTMTG00000016303 #7	PCF11 (ENSTMTG00000016313) #7	ENSTMTG00000016349 #8	ENSTMTG00000016360 #8	CCDC90B (ENSTMTG00000016374) #11	ENSTMTG00000016399 #13	ENSTMTG00000016416 #13	ENSTMTG00000016448	TMEM126A (ENSTMTG00000016454) #15	CREBZF (ENSTMTG00000016468) #16	CCDC89 (ENSTMTG00000016486) #17	ENSTMTG00000016506 #18	PICALM (ENSTMTG00000016582) #20	ENSTMTG00000016675 #21	HIKESHI (ENSTMTG00000016701) #22	ME3 (ENSTMTG00000016711) #25	PRSS23 (ENSTMTG00000016824) #28	FZD4 (ENSTMTG00000016832) #29	ENSTMTG00000016839 #30	ENSTMTG00000016850 #30	RAB38 (ENSTMTG00000016878) #31	ENSTMTG00000016889 #32	GRM5 (ENSTMTG00000016932) #33	TYR (ENSTMTG00000017343) #35	NOX4 (ENSTMTG00000017371) #36	ENSTMTG00000017415	FOLH1 (ENSTMTG00000017450)	NAALAD2 (ENSTMTG00000018096)	CHORDC1 (ENSTMTG00000020258)	FAT3 (ENSTMTG00000020266)
painted turtle	MODERN SPECIES	753	DDIAS (ENSCPBG00000006875)	RAB30 (ENSCPBG00000006855)	PCF11 (ENSCPBG00000006842) #7	ANKRD42 (ENSCPBG00000006830) #8	CCDC90B (ENSCPBG00000006821) #11	ENSCPBG00000006811	ENSCPBG00000006766 #13	ENSCPBG00000006719 ##13	TMEM126A (ENSCPBG00000006706) #15	CREBZF (ENSCPBG00000006697) #16	CCDC89 (ENSCPBG00000006691) #17	ENSCPBG00000006665 #18	CCDC83 (ENSCPBG00000006650) #19	PICALM (ENSCPBG00000006596) #20	EED (ENSCPBG00000006558) #21	HIKESHI (ENSCPBG00000006540) #22	CCDC81 (ENSCPBG00000006529) #23	ME3 (ENSCPBG00000006522) #25	PRSS23 (ENSCPBG00000006510) #28	FZD4 (ENSCPBG00000006503) #29	TMEM135 (ENSCPBG00000006491) #30
Chinese turtle	MODERN SPECIES	706										TMEM126A (ENSPSIG00000006667) #15	CCDC89 (ENSPSIG00000001567) #17	ENSPSIG00000006701 #18	CCDC83 (ENSPSIG00000007052) #19	PICALM (ENSPSIG00000009433) #20	EED (ENSPSIG00000010993) #21	HIKESHI (ENSPSIG00000011852) #22	CCDC81 (ENSPSIG00000012206) #23	ME3 (ENSPSIG00000012232) #25	PRSS23 (ENSPSIG00000013760) #28	FZD4 (ENSPSIG00000013806) #29	TMEM135 (ENSPSIG00000013965) #30	ENSPSIG00000014919	RAB38 (ENSPSIG00000015574) #31	CTSC (ENSPSIG00000015613) #32	TYR (ENSPSIG00000016986) #35	NOX4 (ENSPSIG00000017588) #36	FOLH1 (ENSPSIG00000017747)	NAALAD2 (ENSPSIG00000017958)	CHORDC1 (ENSPSIG00000006884)	ENSPSIG00000001573
Archosauria	ANCESTRAL SPECIES	2	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00940000155156.a.b ##13	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336 #35	ENSGT00940000159621 #36	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a	ENSGT01030000234598.b.a.b.k.b	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341
Aves	ANCESTRAL SPECIES	33	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01000000214875	ENSGT01030000234954	ENSGT00940000155156.a.b ##13	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00390000016046 #17	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT01100000263477.D.c	ENSGT01030000234566.e.b.b.a	ENSGT00950000183127.b.h.a.b	ENSGT01030000234618.D	ENSGT00940000157792	ENSGT00940000160942	ENSGT00390000005673	ENSGT00940000160906	ENSGT00940000153733.A	ENSGT00390000010352	ENSGT00500000044890.a.b	ENSGT00940000160762	ENSGT00390000010128	ENSGT00390000011958	ENSGT00530000064411
Neognathae	ANCESTRAL SPECIES	1	ENSGT00530000064411	ENSGT00390000011958	ENSGT00390000010128	ENSGT00940000160762	ENSGT00500000044890.a.b.f	ENSGT00500000044890.a.b.e	ENSGT00390000010352	ENSGT00940000153733.A	ENSGT00940000160906	ENSGT00390000005673	ENSGT00940000160942	ENSGT00940000157792	ENSGT01030000234618.D	ENSGT01030000234566.e.b.b.a	ENSGT01100000263477.D.c	ENSGT00390000004056 #22	ENSGT00510000047334 #21	ENSGT00950000183068.a.b #20	ENSGT00390000013087 #19	ENSGT00940000155843 #18	ENSGT00390000016046 #17	ENSGT00390000016589 #16	ENSGT00520000055616.a #15	ENSGT00940000155156.a.b ##13	ENSGT00940000155156.a.a ##13	ENSGT01030000234954	ENSGT01000000214875	ENSGT00940000155156.b #13	ENSGT00940000155453 #11	ENSGT00940000154216.a #8	ENSGT00440000034259.b #7
Neognathae_b	ANCESTRAL SPECIES		ENSGT00530000064411	ENSGT00390000011958	ENSGT00390000010128	ENSGT00940000160762	ENSGT00500000044890.a.b.f	ENSGT00500000044890.a.b.e	ENSGT00390000010352	ENSGT00940000153733.A	ENSGT00940000160906	ENSGT00390000005673	ENSGT00940000160942	ENSGT00940000157792	ENSGT01030000234618.D	ENSGT01030000234566.e.b.b.a	ENSGT01100000263477.D.c	ENSGT00390000004056 #22	ENSGT00510000047334 #21	ENSGT00950000183068.a.b #20	ENSGT00390000013087 #19	ENSGT00940000155843 #18	ENSGT00390000016046 #17	ENSGT00390000016589 #16	ENSGT00520000055616.a #15	ENSGT00940000155156.a.b ##13	ENSGT00940000155156.a.a ##13	ENSGT01030000234954	ENSGT01000000214875	ENSGT00940000155156.b #13	ENSGT00940000155453 #11	ENSGT00940000154216.a #8	ENSGT00440000034259.b #7
Passeriformes	ANCESTRAL SPECIES	1	ENSGT00530000064411	ENSGT00390000011958	ENSGT00390000010128	ENSGT00940000160762	ENSGT00500000044890.a.b.f	ENSGT00500000044890.a.b.e	ENSGT00390000010352	ENSGT00940000153733.A	ENSGT00940000160906	ENSGT00390000005673	ENSGT00940000160942	ENSGT00940000157792	ENSGT01030000234618.D	ENSGT01030000234566.e.b.b.a	ENSGT01100000263477.D.c	ENSGT00390000004056 #22	ENSGT00510000047334 #21	ENSGT00950000183068.a.b #20	ENSGT00390000013087 #19	ENSGT00940000155843 #18	ENSGT00390000016046 #17	ENSGT00390000016589 #16	ENSGT00520000055616.a #15	ENSGT00940000155156.a.b ##13	ENSGT01030000234954	ENSGT01000000214875	ENSGT00940000155156.b #13	ENSGT00940000155453 #11	ENSGT00940000154216.a #8	ENSGT00440000034259.b #7	ENSGT00940000156875
Passeriformes_d	ANCESTRAL SPECIES	1	ENSGT00530000064411	ENSGT00390000011958	ENSGT00390000010128	ENSGT00940000160762	ENSGT00500000044890.a.b.f	ENSGT00500000044890.a.b.e	ENSGT00390000010352	ENSGT00940000153733.A	ENSGT00940000160906	ENSGT00390000005673	ENSGT00940000160942	ENSGT00940000157792	ENSGT01030000234618.D	ENSGT01030000234566.e.b.b.a	ENSGT01100000263477.D.c	ENSGT00390000004056 #22	ENSGT00510000047334 #21	ENSGT00950000183068.a.b #20	ENSGT00390000013087 #19	ENSGT00940000155843 #18	ENSGT00390000016046 #17	ENSGT00520000055616.a #15	ENSGT00940000155156.a.b ##13	ENSGT01030000234954	ENSGT01000000214875	ENSGT00940000155156.b #13	ENSGT00940000155453 #11	ENSGT00940000154216.a #8	ENSGT00440000034259.b #7	ENSGT00940000156875	ENSGT00940000166008
Passeriformes_g	ANCESTRAL SPECIES	2	ENSGT00530000064411	ENSGT00390000011958	ENSGT00390000010128	ENSGT00940000160762	ENSGT00500000044890.a.b.f	ENSGT00500000044890.a.b.e	ENSGT00390000010352	ENSGT00940000153733.A	ENSGT00940000160906	ENSGT00390000005673	ENSGT00940000160942	ENSGT00940000157792	ENSGT01030000234618.D	ENSGT01030000234566.e.b.b.a	ENSGT01100000263477.D.c	ENSGT00390000004056 #22	ENSGT00510000047334 #21	ENSGT00950000183068.a.b #20	ENSGT00390000013087 #19	ENSGT00940000155843 #18	ENSGT00390000016046 #17	ENSGT00520000055616.a #15	ENSGT01030000234954	ENSGT01000000214875	ENSGT00940000155156.b #13	ENSGT00940000155453 #11	ENSGT00940000154216.a #8	ENSGT00440000034259.b #7	ENSGT00940000156875	ENSGT00940000166008	ENSGT00940000158099
Medium ground finch	MODERN SPECIES	5								NDUFC2 (ENSGFOG00000006340)	ALG8 (ENSGFOG00000006325)	KCTD21 (ENSGFOG00000006319)	USP35 (ENSGFOG00000006306)	GAB2 (ENSGFOG00000006294)	NARS2 (ENSGFOG00000006269)	TENM4 (ENSGFOG00000006199)	ENSGFOG00000006022	HIKESHI (ENSGFOG00000005993) #22	EED (ENSGFOG00000005964) #21	PICALM (ENSGFOG00000005903) #20	CCDC83 (ENSGFOG00000005886) #19	ENSGFOG00000005867 #18	CCDC89 (ENSGFOG00000005856) #17	TMEM126A (ENSGFOG00000005849) #15	ENSGFOG00000005844	ENSGFOG00000005841	DLG2 (ENSGFOG00000005564) #13	CCDC90B (ENSGFOG00000005480) #11	ANKRD42 (ENSGFOG00000005425) #8	PCF11 (ENSGFOG00000005400) #7	RAB30 (ENSGFOG00000005381)	ENSGFOG00000005366	PRCP (ENSGFOG00000005352)
Passeroidea	ANCESTRAL SPECIES	5	ENSGT00950000182988.a.b.a	ENSGT00530000063816.c	ENSGT00390000010063	ENSGT00530000064411	ENSGT00390000011958	ENSGT00390000010128	ENSGT00940000160762	ENSGT00390000010352	ENSGT00940000153733.A	ENSGT00940000160906	ENSGT00390000005673	ENSGT00940000160942	ENSGT00940000157792	ENSGT01030000234618.D	ENSGT01030000234566.e.b.b.a	ENSGT00390000004056 #22	ENSGT00510000047334 #21	ENSGT00950000183068.a.b #20	ENSGT00390000013087 #19	ENSGT00940000155843 #18	ENSGT00520000055616.a #15	ENSGT01000000214875	ENSGT00940000155156.b #13	ENSGT00940000155453 #11	ENSGT00940000154216.a #8	ENSGT00440000034259.b #7	ENSGT00940000156875	ENSGT00940000166008	ENSGT00940000158099	ENSGT00940000154730.b	ENSGT00950000183134.c.a.a #25
Zebra finch	MODERN SPECIES		INTS4 (ENSTGUG00000013020)	KCTD14 (ENSTGUG00000013019)	ENSTGUG00000013017	ENSTGUG00000020386	ENSTGUG00000027862	ENSTGUG00000020689	ENSTGUG00000022842	NDUFC2 (ENSTGUG00000022186)	ALG8 (ENSTGUG00000013014)	KCTD21 (ENSTGUG00000028148)	ENSTGUG00000021851	USP35 (ENSTGUG00000013010)	GAB2 (ENSTGUG00000013005)	NARS2 (ENSTGUG00000013001)	TENM4 (ENSTGUG00000012991)	HIKESHI (ENSTGUG00000012986) #22	EED (ENSTGUG00000012982) #21	PICALM (ENSTGUG00000012969) #20	ENSTGUG00000012968 #19	SYTL2 (ENSTGUG00000012963) #18	TMEM126A (ENSTGUG00000012961) #15	DLG2 (ENSTGUG00000012956) #13	CCDC90B (ENSTGUG00000012950) #11	ENSTGUG00000027854	ENSTGUG00000026995	ANKRD42 (ENSTGUG00000012948) #8	PCF11 (ENSTGUG00000012944) #7	RAB30 (ENSTGUG00000020570)	ENSTGUG00000021729	PRCP (ENSTGUG00000012934)	FAM181B (ENSTGUG00000022639)
Common canary	MODERN SPECIES	4	ENSSCAG00000001042	AQP11 (ENSSCAG00000001051)	ENSSCAG00000001060	RSF1 (ENSSCAG00000001065)	AAMDC (ENSSCAG00000001075)	INTS4 (ENSSCAG00000001084)	KCTD14 (ENSSCAG00000001102)	NDUFC2 (ENSSCAG00000001114)	ALG8 (ENSSCAG00000001149)	KCTD21 (ENSSCAG00000001228)	ENSSCAG00000001238	USP35 (ENSSCAG00000001248)	GAB2 (ENSSCAG00000001264)	NARS2 (ENSSCAG00000001306)	TENM4 (ENSSCAG00000001503)	HIKESHI (ENSSCAG00000001551) #22	EED (ENSSCAG00000001579) #21	PICALM (ENSSCAG00000001782) #20	ENSSCAG00000002460 #19	ENSSCAG00000002467 #18	TMEM126A (ENSSCAG00000002479) #15	ENSSCAG00000002488	DLG2 (ENSSCAG00000002598) #13	CCDC90B (ENSSCAG00000002918) #11	ANKRD42 (ENSSCAG00000002924) #8	PCF11 (ENSSCAG00000002940) #7	RAB30 (ENSSCAG00000002948)	ENSSCAG00000002952	PRCP (ENSSCAG00000002976)	ME3 (ENSSCAG00000002985) #25	PRSS23 (ENSSCAG00000002988) #28
Flycatcher	MODERN SPECIES		CLNS1A (ENSFALG00000024366)	RSF1 (ENSFALG00000007612)	AAMDC (ENSFALG00000027164)	INTS4 (ENSFALG00000007624)	KCTD14 (ENSFALG00000024292)	ENSFALG00000022877	ENSFALG00000015008	ENSFALG00000015022	ALG8 (ENSFALG00000007638)	KCTD21 (ENSFALG00000015047)	USP35 (ENSFALG00000007648)	GAB2 (ENSFALG00000007657)	NARS2 (ENSFALG00000026154)	TENM4 (ENSFALG00000007664)	ENSFALG00000026075	HIKESHI (ENSFALG00000023535) #22	EED (ENSFALG00000007678) #21	PICALM (ENSFALG00000007689) #20	CCDC83 (ENSFALG00000007697) #19	ENSFALG00000007705 #18	TMEM126A (ENSFALG00000007726) #15	ENSFALG00000024900 ##13	ENSFALG00000029086	ENSFALG00000007731 #13	CCDC90B (ENSFALG00000007739) #11	ANKRD42 (ENSFALG00000007744) #8	PCF11 (ENSFALG00000007754) #7	RAB30 (ENSFALG00000007765)	ENSFALG00000027423	PRCP (ENSFALG00000007776)	ENSFALG00000007780
Great tit	MODERN SPECIES		AQP11 (ENSPMJG00000002710)	CLNS1A (ENSPMJG00000002686)	RSF1 (ENSPMJG00000002677)	AAMDC (ENSPMJG00000002671)	INTS4 (ENSPMJG00000002654)	KCTD14 (ENSPMJG00000002652)	ENSPMJG00000002650	NDUFC2 (ENSPMJG00000002647)	ALG8 (ENSPMJG00000002636)	KCTD21 (ENSPMJG00000002622)	USP35 (ENSPMJG00000002606)	GAB2 (ENSPMJG00000002591)	NARS2 (ENSPMJG00000002370)	TENM4 (ENSPMJG00000002222)	ENSPMJG00000001878	HIKESHI (ENSPMJG00000001825) #22	EED (ENSPMJG00000001816) #21	PICALM (ENSPMJG00000001746) #20	CCDC83 (ENSPMJG00000001732) #19	SYTL2 (ENSPMJG00000001685) #18	CREBZF (ENSPMJG00000001593) #16	TMEM126A (ENSPMJG00000001566) #15	ENSPMJG00000001563 ##13	ENSPMJG00000001264 #13	CCDC90B (ENSPMJG00000001139) #11	ANKRD42 (ENSPMJG00000001132) #8	PCF11 (ENSPMJG00000001112) #7	RAB30 (ENSPMJG00000001108)	ENSPMJG00000001091	PRCP (ENSPMJG00000001085)	FAM181B (ENSPMJG00000001078)
Neognathae_c	ANCESTRAL SPECIES	11	ENSGT00390000010063	ENSGT00530000064411	ENSGT00390000011958	ENSGT00390000010128	ENSGT00940000160762	ENSGT00500000044890.a.b.f	ENSGT00500000044890.a.b.e	ENSGT00390000010352	ENSGT00940000153733.A	ENSGT00940000160906	ENSGT00940000160942	ENSGT00940000157792	ENSGT01030000234618.D	ENSGT01030000234566.e.b.b.a	ENSGT01100000263477.D.c	ENSGT00390000004056 #22	ENSGT00510000047334 #21	ENSGT00950000183068.a.b #20	ENSGT00390000013087 #19	ENSGT00940000155843 #18	ENSGT00390000016046 #17	ENSGT00390000016589 #16	ENSGT00520000055616.a #15	ENSGT00940000155156.a.b ##13	ENSGT00940000155156.a.a ##13	ENSGT00940000155156.b #13	ENSGT00940000155453 #11	ENSGT00940000154216.a #8	ENSGT00440000034259.b #7	ENSGT00940000156875	ENSGT00940000166008
Kakapo	MODERN SPECIES	11	CLNS1A (ENSSHBG00005019157)	RSF1 (ENSSHBG00005019153)	AAMDC (ENSSHBG00005019150)	ENSSHBG00005019147	KCTD14 (ENSSHBG00005019145)	ENSSHBG00005019143	ENSSHBG00005019141	NDUFC2 (ENSSHBG00005019140)	ALG8 (ENSSHBG00005019138)	KCTD21 (ENSSHBG00005019132)	USP35 (ENSSHBG00005019128)	GAB2 (ENSSHBG00005019121)	NARS2 (ENSSHBG00005019116)	TENM4 (ENSSHBG00005016336)	ENSSHBG00005016096	HIKESHI (ENSSHBG00005016088) #22	EED (ENSSHBG00005016083) #21	PICALM (ENSSHBG00005016076) #20	CCDC83 (ENSSHBG00005016062) #19	ENSSHBG00005016055 #18	ENSSHBG00005016046 #18	CCDC89 (ENSSHBG00005016044) #17	CREBZF (ENSSHBG00005016039) #16	TMEM126A (ENSSHBG00005016034) #15	ENSSHBG00005016026 ##13	ENSSHBG00005003273 #13	CCDC90B (ENSSHBG00005001860) #11	ANKRD42 (ENSSHBG00005001836) #8	PCF11 (ENSSHBG00005001785) #7	RAB30 (ENSSHBG00005000224)	ENSSHBG00005000219
Golden eagle	MODERN SPECIES	10	RSF1 (ENSACCG00020009744)	AAMDC (ENSACCG00020009724)	INTS4 (ENSACCG00020009671)	KCTD14 (ENSACCG00020009629)	ENSACCG00020009616	ENSACCG00020009607	ENSACCG00020009591	NDUFC2 (ENSACCG00020009583)	ALG8 (ENSACCG00020009570)	KCTD21 (ENSACCG00020009555)	USP35 (ENSACCG00020009536)	GAB2 (ENSACCG00020009521)	NARS2 (ENSACCG00020009489)	TENM4 (ENSACCG00020009361)	ENSACCG00020009166	HIKESHI (ENSACCG00020009148) #22	EED (ENSACCG00020009118) #21	PICALM (ENSACCG00020009051) #20	CCDC83 (ENSACCG00020008977) #19	ENSACCG00020008947 #18	CCDC89 (ENSACCG00020008913) #17	CREBZF (ENSACCG00020008904) #16	TMEM126A (ENSACCG00020008886) #15	ENSACCG00020008856 ##13	ENSACCG00020008763 ##13	CCDC90B (ENSACCG00020008670) #11	ANKRD42 (ENSACCG00020008637) #8	PCF11 (ENSACCG00020008605) #7	ENSACCG00020008589	RAB30 (ENSACCG00020008577)	ENSACCG00020008564
Galloanserae	ANCESTRAL SPECIES	1	ENSGT00390000010063	ENSGT00530000064411	ENSGT00390000011958	ENSGT00390000010128	ENSGT00940000160762	ENSGT00500000044890.a.b.f	ENSGT00500000044890.a.b.e	ENSGT00390000010352	ENSGT00940000153733.A	ENSGT00940000160906	ENSGT00940000160942	ENSGT00940000157792	ENSGT01030000234618.D	ENSGT01030000234566.e.b.b.a	ENSGT01100000263477.D.c	ENSGT00390000004056 #22	ENSGT00510000047334 #21	ENSGT00950000183068.a.b #20	ENSGT00390000013087 #19	ENSGT00940000155843 #18	ENSGT00390000016046 #17	ENSGT00390000016589 #16	ENSGT00520000055616.a #15	ENSGT00940000155156.a.b ##13	ENSGT00940000155156.a.a ##13	ENSGT00940000155453 #11	ENSGT00940000154216.a #8	ENSGT00440000034259.b #7	ENSGT00940000156875	ENSGT00940000166008	ENSGT00940000158099
Anatidae	ANCESTRAL SPECIES	64	ENSGT00530000063816.c	ENSGT00390000010063	ENSGT00530000064411	ENSGT00390000011958	ENSGT00390000010128	ENSGT00940000160762	ENSGT00500000044890.a.b.f	ENSGT00390000010352	ENSGT00940000153733.A	ENSGT00940000160906	ENSGT00940000160942	ENSGT00940000157792	ENSGT01030000234618.D	ENSGT01030000234566.e.b.b.a	ENSGT01100000263477.D.c	ENSGT00390000004056 #22	ENSGT00510000047334 #21	ENSGT00950000183068.a.b #20	ENSGT00390000013087 #19	ENSGT00940000155843 #18	ENSGT00390000016046 #17	ENSGT00520000055616.a #15	ENSGT00940000155156.a.b ##13	ENSGT00940000155156.a.a ##13
Pink-footed goose	MODERN SPECIES	81	AQP11 (ENSABRG00000004675)	CLNS1A (ENSABRG00000004719)	RSF1 (ENSABRG00000004729)	AAMDC (ENSABRG00000004768)	INTS4 (ENSABRG00000004795)	KCTD14 (ENSABRG00000004823)	ENSABRG00000004830	NDUFC2 (ENSABRG00000004836)	ALG8 (ENSABRG00000004842)	KCTD21 (ENSABRG00000004855)	USP35 (ENSABRG00000004859)	GAB2 (ENSABRG00000004871)	ENSABRG00000004892	TENM4 (ENSABRG00000004910)	ENSABRG00000005009	HIKESHI (ENSABRG00000005045) #22	EED (ENSABRG00000005077) #21	PICALM (ENSABRG00000005201) #20	ENSABRG00000005262 #18	CCDC89 (ENSABRG00000005288) #17	TMEM126A (ENSABRG00000005297) #15	ENSABRG00000005304 ##13	ENSABRG00000005335 ##13
Duck	MODERN SPECIES		ENSAPLG00000009988	EMSY (ENSAPLG00000010078)	THAP12 (ENSAPLG00000010379)	WNT11 (ENSAPLG00000010439)	UVRAG (ENSAPLG00000010570)	DGAT2 (ENSAPLG00000011172)	MOGAT2 (ENSAPLG00000011246)	MAP6 (ENSAPLG00000029565)	ENSAPLG00000021295	GDPD5 (ENSAPLG00000011999)	ENSAPLG00000025890	SERPINH1 (ENSAPLG00000014348)	ENSAPLG00000014513	FCHSD2 (ENSAPLG00000014854)	ENSAPLG00000021685	HIKESHI (ENSAPLG00000018234) #22	EED (ENSAPLG00000012886) #21	PICALM (ENSAPLG00000012265) #20	CCDC83 (ENSAPLG00000012173) #19	ENSAPLG00000011673 #18	CCDC89 (ENSAPLG00000011655) #17	ENSAPLG00000017312 #7	RAB30 (ENSAPLG00000019842)	ENSAPLG00000020064	PRCP (ENSAPLG00000012966)	ENSAPLG00000022867	FAM181B (ENSAPLG00000030157)	UFM1 (ENSAPLG00000030396)	FREM2 (ENSAPLG00000005184)	ENSAPLG00000004070	STOML3 (ENSAPLG00000003783)
Phasianidae	ANCESTRAL SPECIES		ENSGT00390000010063	ENSGT00530000064411	ENSGT00390000011958	ENSGT00390000010128	ENSGT00940000160762	ENSGT00500000044890.a.b.f	ENSGT00500000044890.a.b.e	ENSGT00390000010352	ENSGT00940000153733.A.c	ENSGT00940000160906	ENSGT00940000160942.c	ENSGT00940000157792	ENSGT01030000234618.D	ENSGT01030000234566.e.b.b.a	ENSGT01100000263477.D.c	ENSGT00390000004056 #22	ENSGT00510000047334 #21	ENSGT00950000183068.a.b #20	ENSGT00390000013087 #19	ENSGT00940000155843 #18	ENSGT00390000016046 #17	ENSGT00390000016589 #16	ENSGT00520000055616.a #15	ENSGT00940000155156.a.b ##13	ENSGT00940000155156.a.a ##13	ENSGT00940000155453 #11	ENSGT00940000154216.a #8	ENSGT00440000034259.b #7	ENSGT00940000156875	ENSGT00940000166008	ENSGT00940000158099
Japanese quail	MODERN SPECIES		AAMDC (ENSCJPG00005004505)	INTS4 (ENSCJPG00005004504)	KCTD14 (ENSCJPG00005004503)	ENSCJPG00005004501	ENSCJPG00005004500	ENSCJPG00005004498	ENSCJPG00005004497	NDUFC2 (ENSCJPG00005004495)	ALG8 (ENSCJPG00005004492)	KCTD21 (ENSCJPG00005004491)	ENSCJPG00005004490	GAB2 (ENSCJPG00005004489)	NARS2 (ENSCJPG00005004456)	TENM4 (ENSCJPG00005004438)	ENSCJPG00005004403	HIKESHI (ENSCJPG00005004388) #22	EED (ENSCJPG00005004385) #21	PICALM (ENSCJPG00005004383) #20	ENSCJPG00005004381 #19	ENSCJPG00005004380 #18	CCDC89 (ENSCJPG00005004376) #17	CREBZF (ENSCJPG00005004375) #16	TMEM126A (ENSCJPG00005004371) #15	ENSCJPG00005004364 ##13	ENSCJPG00005004310 ##13	CCDC90B (ENSCJPG00005004187) #11	ANKRD42 (ENSCJPG00005004177) #8	ENSCJPG00005004176 #7	RAB30 (ENSCJPG00005004175)	ENSCJPG00005004173	PRCP (ENSCJPG00005004171)
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00390000010063	ENSGT00530000064411	ENSGT00390000011958	ENSGT00390000010128	ENSGT00940000160762	ENSGT00500000044890.a.b.f	ENSGT00500000044890.a.b.e	ENSGT00390000010352	ENSGT00940000153733.A.c	ENSGT00940000160906	ENSGT00940000160942.c	ENSGT00940000157792	ENSGT01030000234618.D	ENSGT01030000234566.e.b.b.a	ENSGT01100000263477.D.c	ENSGT00390000004056 #22	ENSGT00510000047334 #21	ENSGT00950000183068.a.b #20	ENSGT00390000013087 #19	ENSGT00940000155843 #18	ENSGT00390000016046 #17	ENSGT00390000016589 #16	ENSGT00520000055616.a #15	ENSGT00940000155156.a.a ##13	ENSGT00940000155453 #11	ENSGT00940000154216.a #8	ENSGT00440000034259.b #7	ENSGT00940000156875	ENSGT00940000166008	ENSGT00940000158099	ENSGT00940000154730.b
Chicken	MODERN SPECIES		AAMDC (ENSGALG00010002039)	INTS4 (ENSGALG00010001997)	KCTD14 (ENSGALG00010001987)	THRSP (ENSGALG00010001976)	THRSPB (ENSGALG00010003522)	NDUFC2 (ENSGALG00010001957)	ALG8 (ENSGALG00010001938)	KCTD21 (ENSGALG00010001928)	USP35 (ENSGALG00010001911)	GAB2 (ENSGALG00010003818)	ENSGALG00010001905	NARS2 (ENSGALG00010001903)	TENM4 (ENSGALG00010009135)	ENSGALG00010009169	ENSGALG00010009107	HIKESHI (ENSGALG00010009101) #22	EED (ENSGALG00010009092) #21	PICALM (ENSGALG00010008170) #20	CCDC83 (ENSGALG00010008119) #19	SYTL2 (ENSGALG00010008111) #18	CCDC89 (ENSGALG00010008102) #17	CREBZF (ENSGALG00010009144) #16	TMEM126A (ENSGALG00010008098) #15	DLG2 (ENSGALG00010008069) ##13	CCDC90B (ENSGALG00010008012) #11	ANKRD42 (ENSGALG00010008005) #8	PCF11 (ENSGALG00010007991) #7	RAB30 (ENSGALG00010007979)	ENSGALG00010007846	ENSGALG00010007818	PRCP (ENSGALG00010007811)
Turkey	MODERN SPECIES		ENSMGAG00000015229	ENSMGAG00000015228	PCF11 (ENSMGAG00000015231) #7	ENSMGAG00000015233 #11	ENSMGAG00000015232 #8	ENSMGAG00000015234 ##13	ENSMGAG00000016818 ##13	ENSMGAG00000020572	ENSMGAG00000020506	ENSMGAG00000015236 #15	ENSMGAG00000015637 #17	ENSMGAG00000015237 #18	ENSMGAG00000015238 #19	ENSMGAG00000015241 #20	ENSMGAG00000015239 #21	ENSMGAG00000015242 #22	ENSMGAG00000019282	ENSMGAG00000015244	ENSMGAG00000018402	ENSMGAG00000015247	GAB2 (ENSMGAG00000015248)	ENSMGAG00000018248	KCTD21 (ENSMGAG00000017260)	ENSMGAG00000015249	ENSMGAG00000015250	ENSMGAG00000015251	ENSMGAG00000021463	AAMDC (ENSMGAG00000019319)	ENSMGAG00000015254	KCTD14 (ENSMGAG00000015253)	ENSMGAG00000015252
African ostrich	MODERN SPECIES	538													CCDC83 (ENSSCUG00000004709) #19	PICALM (ENSSCUG00000004695) #20	EED (ENSSCUG00000004682) #21	HIKESHI (ENSSCUG00000004675) #22	ENSSCUG00000004666	TENM4 (ENSSCUG00000004650)	ENSSCUG00000004646	NARS2 (ENSSCUG00000004641)	ENSSCUG00000004638	GAB2 (ENSSCUG00000004633)	USP35 (ENSSCUG00000004630)	KCTD21 (ENSSCUG00000004628)	ALG8 (ENSSCUG00000004620)	NDUFC2 (ENSSCUG00000004615)
Australian saltwater crocodile	MODERN SPECIES	27	ENSCPRG00005016261	PRCP (ENSCPRG00005016228)	DDIAS (ENSCPRG00005016217)	RAB30 (ENSCPRG00005016207)	PCF11 (ENSCPRG00005016193) #7	ANKRD42 (ENSCPRG00005016174) #8	CCDC90B (ENSCPRG00005016161) #11	ENSCPRG00005016157	ENSCPRG00005016151 #13	ENSCPRG00005016140 ##13	TMEM126A (ENSCPRG00005016136) #15	ENSCPRG00005016131 #18	CCDC83 (ENSCPRG00005016129) #19	PICALM (ENSCPRG00005016082) #20	EED (ENSCPRG00005016068) #21	HIKESHI (ENSCPRG00005016067) #22	ME3 (ENSCPRG00005016065) #25	PRSS23 (ENSCPRG00005016061) #28	FZD4 (ENSCPRG00005016056) #29	TMEM135 (ENSCPRG00005016050) #30	RAB38 (ENSCPRG00005016034) #31	CTSC (ENSCPRG00005016032) #32	GRM5 (ENSCPRG00005016003) #33	TYR (ENSCPRG00005015987) #35	NOX4 (ENSCPRG00005015970) #36	FOLH1 (ENSCPRG00005015598)	ENSCPRG00005015519	ENSCPRG00005015516	CHORDC1 (ENSCPRG00005015503)	FAT3 (ENSCPRG00005015491)	MTNR1B (ENSCPRG00005015445)
Anura	ANCESTRAL SPECIES	28	ENSGT00940000154730.b	ENSGT00940000158099	ENSGT00940000166008	ENSGT00940000156875	ENSGT00440000034259.b #7	ENSGT00940000154216.a #8	ENSGT00940000155453 #11	ENSGT00940000155156.b #13	ENSGT01030000234954	ENSGT00520000055616.a #15	ENSGT00390000016589 #16	ENSGT00940000155843 #18	ENSGT00390000013087 #19	ENSGT00950000183068.a.b #20	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00940000157141 #29	ENSGT00390000000303 #30	ENSGT00940000157301.b #31	ENSGT00940000155787 #32	ENSGT01030000234595.A.a #33	ENSGT00940000155336.f #35	ENSGT00940000159621 #36	ENSGT01030000234598.b.a.b.i	ENSGT00940000154174	ENSGT00940000154981	ENSGT00940000162341	ENSGT00940000160117
Frog	MODERN SPECIES	2	FAM181B (ENSXETG00000037323)	ENSXETG00000042576	ENSXETG00000047484	ENSXETG00000046737	tenm4 (ENSXETG00000015288)	klhdc1 (ENSXETG00000010455)	gab2 (ENSXETG00000010452)	usp35 (ENSXETG00000010451)	alg8 (ENSXETG00000010450)	kctd14 (ENSXETG00000010449)	ints4 (ENSXETG00000010447)	aamdc (ENSXETG00000038985)	rsf1 (ENSXETG00000010445)	clns1a (ENSXETG00000010442)	eed (ENSXETG00000010440) #21	hikeshi (ENSXETG00000010439) #22	ccdc81 (ENSXETG00000010437) #23	me3 (ENSXETG00000010436) #25	prss23 (ENSXETG00000044339) #28	fzd4 (ENSXETG00000034910) #29	tmem135 (ENSXETG00000010432) #30	ENSXETG00000035317	ENSXETG00000011752	rab38 (ENSXETG00000011751) #31	ctsc (ENSXETG00000011748) #32	grm5 (ENSXETG00000011740) #33	tyr (ENSXETG00000011738) #35	nox4 (ENSXETG00000011734) #36	ENSXETG00000042189	ENSXETG00000040698	folh1 (ENSXETG00000011728)
Coelacanth	MODERN SPECIES	464								ENSLACG00000016646	TMEM126A (ENSLACG00000016479) #15	CREBZF (ENSLACG00000016406) #16	ELAC1 (ENSLACG00000016367)	ENSLACG00000016175 #18	ENSLACG00000022643 #19	PICALM (ENSLACG00000014492) #20	EED (ENSLACG00000013624) #21	HIKESHI (ENSLACG00000013404) #22	CCDC81 (ENSLACG00000012549) #23	ME3 (ENSLACG00000009057) #25	PRSS23 (ENSLACG00000007588) #28
Actinopterygii	ANCESTRAL SPECIES	32	ENSGT00940000159169	ENSGT00510000047809	ENSGT00530000063558.A	ENSGT00530000063503.a.a	ENSGT00940000157308	ENSGT00530000063907.d	ENSGT00390000010779.a.b.b	ENSGT00530000063169.b.b	ENSGT00390000010218	ENSGT00900000141090	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.d	ENSGT00940000153695.B	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00390000018895.a	ENSGT00950000183058.A.b	ENSGT00950000183058.A.a	ENSGT00940000160248	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000158209	ENSGT00940000154474.A	ENSGT00940000157694
Neopterygii	ANCESTRAL SPECIES	15	ENSGT00940000159169	ENSGT00510000047809	ENSGT00530000063558.A	ENSGT00530000063503.a.a	ENSGT00940000157308	ENSGT00530000063907.d	ENSGT00390000010779.a.b.b	ENSGT00530000063169.b.b	ENSGT00390000010218	ENSGT00900000141090	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.d	ENSGT00940000153695.B	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00390000018895.a	ENSGT00950000183058.A.b	ENSGT00950000183058.A.a	ENSGT00940000160248	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00530000066677
Osteoglossocephalai	ANCESTRAL SPECIES	129										ENSGT00390000010218	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.d	ENSGT00940000153695.B	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00950000183134.c.a.a #25	ENSGT00390000000155.a.a #28	ENSGT00390000018895.a	ENSGT00940000160248.b	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00530000066677	ENSGT00940000154474.A	ENSGT00940000154474.B.a
Osteoglossiformes	ANCESTRAL SPECIES	92	ENSGT01050000244905.F.a	ENSGT00390000010463.a.b.b	ENSGT00390000006330.a.a.a	ENSGT00390000002174.b	ENSGT00530000063599.B.f	ENSGT00940000155311.B	ENSGT00940000154486.b.b	ENSGT00940000154486.b.a.a.b.e.b	ENSGT00390000016151	ENSGT00510000049102	ENSGT00940000160532.g.a	ENSGT00940000161997.a	ENSGT00390000013151.a.a.a.e	ENSGT00390000012561.b.ob	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000018895.a.c	ENSGT00950000183058.A.a.f	ENSGT00940000154851.A.b	ENSGT00940000159723	ENSGT00940000154652.n	ENSGT01030000234579.B.b	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00940000163254	ENSGT00530000063484.b.b.d.b	ENSGT00940000154342.C	ENSGT00940000159499	ENSGT00940000159677.a.b	ENSGT00940000159677.a.a
Asian bonytongue	MODERN SPECIES	5	ENSSFOG00015029109	ADAMTS1 (ENSSFOG00015027602)	cyyr1 (ENSSFOG00015016068)	ENSSFOG00015016010	ENSSFOG00015031552	ENSSFOG00015015902	ENSSFOG00015015887	txnl4b (ENSSFOG00015027515)	pcnp (ENSSFOG00015015871)	rpl24 (ENSSFOG00015015863)	cep97 (ENSSFOG00015015856)	ENSSFOG00015025764	ENSSFOG00015029353	ENSSFOG00015032793	eed (ENSSFOG00015023408) #21	hikeshi (ENSSFOG00015023419) #22	tmem39a (ENSSFOG00015029844)	ENSSFOG00015032534	ENSSFOG00015000151	dusp27 (ENSSFOG00015000217)	ENSSFOG00015000231	ENSSFOG00015030454	ENSSFOG00015000252	ENSSFOG00015000387	ENSSFOG00015025471	ENSSFOG00015000478	cpox (ENSSFOG00015000500)	prrg1 (ENSSFOG00015024994)	ENSSFOG00015000545	ENSSFOG00015025496	ENSSFOG00015003932
P. kingsleyae	MODERN SPECIES	858														rpl24 (ENSPKIG00000005608)	ENSPKIG00000005628	hikeshi (ENSPKIG00000005655) #22
Clupeocephala	ANCESTRAL SPECIES	109												ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00940000153695.B	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00390000000155.a.a #28	ENSGT00390000018895.a	ENSGT00950000183058.A.b.b	ENSGT00950000183058.A.a.d	ENSGT00940000160248.b	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00530000066677	ENSGT00940000154474.A
Euteleosteomorpha	ANCESTRAL SPECIES	563																ENSGT00390000004056 #22	ENSGT00510000047334 #21
Acanthomorphata	ANCESTRAL SPECIES	117	ENSGT00940000158745	ENSGT00940000158051	ENSGT00810000125473.B	ENSGT00940000154553.a.b	ENSGT00950000183193.B	ENSGT00940000153431.a.v.a	ENSGT00940000153431.a.v.b	ENSGT00970000193421.B	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a	ENSGT00950000183095.a.b.a.a	ENSGT01060000249637	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.a.b	ENSGT00940000155599.i.b	ENSGT00940000156646.d	ENSGT00940000155369.A.d.a	ENSGT00390000013207	ENSGT00390000004927	ENSGT00940000157393	ENSGT00940000155879	ENSGT00940000156269.a.a	ENSGT00940000164564.f.a	ENSGT00940000163520.A.a.a.a.a.a.a.g.b	ENSGT00900000141196	ENSGT00940000159561	ENSGT00390000011854	ENSGT00530000064222.b
Euacanthomorphacea	ANCESTRAL SPECIES	52	ENSGT00940000158745	ENSGT00940000158051	ENSGT00810000125473.B	ENSGT00940000154553.a.b	ENSGT00950000183193.B	ENSGT00940000153431.a.v.a	ENSGT00940000153431.a.v.b	ENSGT00970000193421.B	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a	ENSGT00950000183095.a.b.a.a	ENSGT01060000249637	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.a.b	ENSGT00940000155599.i.b	ENSGT00940000156646.d	ENSGT00940000155369.A.d.a	ENSGT00390000013207	ENSGT00390000004927	ENSGT00940000157393	ENSGT00940000155879	ENSGT00940000156269.a.a	ENSGT00940000164564.f.a	ENSGT00940000163520.A.a.a.a.a.a.a.g.b	ENSGT00900000141196	ENSGT00940000159561	ENSGT00390000011854	ENSGT00530000064222.b
Percomorphaceae	ANCESTRAL SPECIES	51	ENSGT00940000158745	ENSGT00940000158051	ENSGT00810000125473.B	ENSGT00940000154553.a.b	ENSGT00950000183193.B	ENSGT00940000153431.a.v.a	ENSGT00940000153431.a.v.b	ENSGT00970000193421.B	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a	ENSGT00950000183095.a.b.a.a	ENSGT01060000249637	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.a.b	ENSGT00940000155599.i.b	ENSGT00940000156646.d	ENSGT00940000155369.A.d.a	ENSGT00390000013207	ENSGT00390000004927	ENSGT00940000157393	ENSGT00940000155879	ENSGT00940000156269.a.a	ENSGT00940000164564.f.a	ENSGT00940000163520.A.a.a.a.a.a.a.g.b
Percomorphaceae_B	ANCESTRAL SPECIES	11	ENSGT00940000158745	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000161549.a.a	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000178078	ENSGT00940000159386	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.a.b	ENSGT00940000155599.i.b	ENSGT00940000155369.A.d.a	ENSGT00940000156646.d
Percomorphaceae_C	ANCESTRAL SPECIES	12	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000161549.a.a	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000178078	ENSGT00940000159386	ENSGT00940000168627	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.a.b	ENSGT00940000155599.i.b	ENSGT00940000155369.A.d.a	ENSGT00940000156646.d
Eupercaria	ANCESTRAL SPECIES	9	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000161549.a.a	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000178078	ENSGT00940000159386	ENSGT00940000168627	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.a.b	ENSGT00940000155599.i.b	ENSGT00940000155369.A.d.a	ENSGT00940000156646.d	ENSGT00390000013207	ENSGT00390000004927	ENSGT00940000157393	ENSGT00940000155879	ENSGT00940000156269.a.a	ENSGT00940000164564.f.a	ENSGT00940000163520.A.a.a.a.a.a.a.g.b	ENSGT00390000011854	ENSGT00940000159561.m	ENSGT00900000141196	ENSGT00530000064222.b
Tetraodontidae	ANCESTRAL SPECIES	3	ENSGT00940000154553.a.b	ENSGT00810000125473.B	ENSGT00940000158051	ENSGT00940000158745	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000158601	ENSGT00940000159386	ENSGT00550000074845	ENSGT00940000168627	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000004056 #22	ENSGT00940000155599.i.b	ENSGT00940000164564.e.a	ENSGT00940000163520.A.a.a.a.a.a.a.g.b	ENSGT00390000011854	ENSGT00940000159561.m	ENSGT00900000141196	ENSGT00530000064222.b	ENSGT00940000165169.b.a	ENSGT00940000160102	ENSGT00940000156159	ENSGT00550000074912	ENSGT00940000154940	ENSGT00950000183000.c.b	ENSGT00940000158135	ENSGT00390000012799
Fugu	MODERN SPECIES	11	SGPP1 (ENSTRUG00000025016)	AKAP6 (ENSTRUG00000023905)	NPAS3 (ENSTRUG00000004071)	egln3 (ENSTRUG00000024714)	sptssa (ENSTRUG00000027104)	eapp (ENSTRUG00000031136)	PRKD1 (ENSTRUG00000002543)	foxg1a (ENSTRUG00000012582)	ehd4 (ENSTRUG00000022398)	coch (ENSTRUG00000027600)	scfd1 (ENSTRUG00000011884)	ENSTRUG00000011636	strn3 (ENSTRUG00000011310)	ap4s1 (ENSTRUG00000011227)	hectd1 (ENSTRUG00000011055)	hikeshi (ENSTRUG00000025477) #22	dhrs13a.2 (ENSTRUG00000010572)	haus2 (ENSTRUG00000023669)	ENSTRUG00000010421	lrrc57 (ENSTRUG00000010341)	ENSTRUG00000028870	ENSTRUG00000028990	atg14 (ENSTRUG00000023016)	trf3 (ENSTRUG00000009283)	jmjd7 (ENSTRUG00000009235)	fbxo34 (ENSTRUG00000020409)	lgals3b (ENSTRUG00000009104)	timm9 (ENSTRUG00000019688)	arid4a (ENSTRUG00000008557)	psma3 (ENSTRUG00000008340)	snx6 (ENSTRUG00000007861)
Tetraodon	MODERN SPECIES	26	LMNA (ENSTNIG00000002632)	scn1bb (ENSTNIG00000002631)	ENSTNIG00000002630	NT5C3B (ENSTNIG00000002615)	FKBP10 (ENSTNIG00000002614)	p3h4 (ENSTNIG00000002613)	ENSTNIG00000002612	ENSTNIG00000000161	ENSTNIG00000002610	ENSTNIG00000002609	g2e3 (ENSTNIG00000002608)	strn3 (ENSTNIG00000002607)	ap4s1 (ENSTNIG00000002606)	hectd1 (ENSTNIG00000002605)	HEATR5A (ENSTNIG00000002604)	hikeshi (ENSTNIG00000002603) #22	dhrs13a.2 (ENSTNIG00000002602)	haus2 (ENSTNIG00000001117)	ENSTNIG00000002601	lrrc57 (ENSTNIG00000002600)	ENSTNIG00000002599	atg14 (ENSTNIG00000002598)	tbpl2 (ENSTNIG00000002597)	jmjd7 (ENSTNIG00000002596)	lgals3b (ENSTNIG00000002595)	timm9 (ENSTNIG00000002594)	arid4a (ENSTNIG00000002593)	psma3 (ENSTNIG00000001368)	snx6 (ENSTNIG00000002592)	cfl2 (ENSTNIG00000000381)	ENSTNIG00000000632
Eupecaria_A	ANCESTRAL SPECIES	10	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000161549.a.a	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000178078	ENSGT00940000159386	ENSGT00940000168627	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.a.b	ENSGT00940000155599.i.b	ENSGT00940000155369.A.d.a	ENSGT00940000156646.d	ENSGT00390000013207	ENSGT00390000004927	ENSGT00940000157393	ENSGT00940000155879	ENSGT00940000156269.a.a	ENSGT00940000164564.f.a	ENSGT00940000163520.A.a.a.a.a.a.a.g.b	ENSGT00390000011854	ENSGT00940000159561.m	ENSGT00900000141196	ENSGT00530000064222.b
Ballan wrasse	MODERN SPECIES	569				ENSLBEG00000020156	ehd4 (ENSLBEG00000020127)	g2e3 (ENSLBEG00000020092)	scfd1 (ENSLBEG00000020023)	ENSLBEG00000019993	coch (ENSLBEG00000019947)	ENSLBEG00000019921	strn3 (ENSLBEG00000019840)	ap4s1 (ENSLBEG00000019788)	ENSLBEG00000019764	hectd1 (ENSLBEG00000019658)	HEATR5A (ENSLBEG00000019543)	hikeshi (ENSLBEG00000019476) #22	dhrs13a.1 (ENSLBEG00000019189)	dhrs13a.2 (ENSLBEG00000019100)	ENSLBEG00000019070	ENSLBEG00000019055
Eupecaria_B	ANCESTRAL SPECIES	11	ENSGT00940000158745	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000161549.a.a	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000159386	ENSGT00940000168627	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.a.b	ENSGT00940000155599.i.b	ENSGT00940000155369.A.d.a	ENSGT00940000156646.d	ENSGT00390000013207	ENSGT00390000004927	ENSGT00940000157393	ENSGT00940000155879	ENSGT00940000156269.a.a	ENSGT00940000164564.f.a	ENSGT00940000163520.A.a.a.a.a.a.a.g.b	ENSGT00390000011854	ENSGT00940000159561.m	ENSGT00900000141196	ENSGT00530000064222.b
Eupecaria_C	ANCESTRAL SPECIES	8	ENSGT00940000158051	ENSGT00940000158745	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845.g	ENSGT00940000159386	ENSGT00940000168627.e.b	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.a.b	ENSGT00940000155599.i.b	ENSGT00940000156646.d	ENSGT00940000155369.A.d.a	ENSGT00390000004927	ENSGT00940000157393	ENSGT00940000155879	ENSGT00940000156269.a.a	ENSGT00940000164564.f.a	ENSGT00940000163520.A.a.a.a.a.a.a.g.b	ENSGT00940000165169.b.a	ENSGT00530000064222.b	ENSGT00900000141196	ENSGT00940000159561.m	ENSGT00390000011854
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	25	ENSGT00940000158051	ENSGT00940000158745	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845.g	ENSGT00940000159386	ENSGT00940000168627.e.b	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.a.b	ENSGT00940000155599.i.b	ENSGT00940000156646.d	ENSGT00940000155369.A.d.a
Large yellow croaker	MODERN SPECIES	489	dohh (ENSLCRG00005001111)	cherp (ENSLCRG00005001127)	klf2a (ENSLCRG00005001164)	EPS15L1 (ENSLCRG00005001166)	ENSLCRG00005001174	lrrc57 (ENSLCRG00005001177)	MDGA2 (ENSLCRG00005001190)	slc3a2b (ENSLCRG00005001250)	scfd1 (ENSLCRG00005001262)	coch (ENSLCRG00005001307)	ENSLCRG00005003973	strn3 (ENSLCRG00005003979)	ap4s1 (ENSLCRG00005004138)	hectd1 (ENSLCRG00005004149)	HEATR5A (ENSLCRG00005004193)	hikeshi (ENSLCRG00005004392) #22	DHRS13 (ENSLCRG00005004394)	ENSLCRG00005004459	LRRC7 (ENSLCRG00005004474)	ENSLCRG00005004943	nasp (ENSLCRG00005004949)	SOX14 (ENSLCRG00005004953)	CLDN18 (ENSLCRG00005004954)	HS2ST1 (ENSLCRG00005004956)	lmo4b (ENSLCRG00005004958)	kyat3.2 (ENSLCRG00005004968)	LRRC8C (ENSLCRG00005005676)	lrrc8db (ENSLCRG00005005678)	barhl2 (ENSLCRG00005005679)	ZNF644 (ENSLCRG00005005680)	tgfbr3 (ENSLCRG00005005681)
Gilthead seabream	MODERN SPECIES	7	ENSSAUG00010002170	mgaa (ENSSAUG00010002437)	ENSSAUG00010002446	tyro3 (ENSSAUG00010002447)	lrrc57 (ENSSAUG00010002452)	haus2 (ENSSAUG00010002453)	ENSSAUG00010002457	ENSSAUG00010002460	ENSSAUG00010002462	ENSSAUG00010002464	ENSSAUG00010002468	strn3 (ENSSAUG00010002537)	ap4s1 (ENSSAUG00010005736)	hectd1 (ENSSAUG00010005756)	HEATR5A (ENSSAUG00010005864)	hikeshi (ENSSAUG00010008685) #22	ENSSAUG00010008687	dhrs13a.2 (ENSSAUG00010008688)	ENSSAUG00010008692	ENSSAUG00010008693	ENSSAUG00010008694	coch (ENSSAUG00010008696)	ENSSAUG00010008699	coch (ENSSAUG00010008704)	ENSSAUG00010008708	scfd1 (ENSSAUG00010008727)	g2e3 (ENSSAUG00010010170)	ehd4 (ENSSAUG00010010174)	foxg1a (ENSSAUG00010010180)	PRKD1 (ENSSAUG00010010251)	ENSSAUG00010013363
Perciformes	ANCESTRAL SPECIES	36								ENSGT00950000183095.a.b.a.a	ENSGT00940000153804.B	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000159386	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.a.b	ENSGT00940000155599.i.b	ENSGT00940000155369.A.d.a	ENSGT00940000156646.d	ENSGT00390000013207	ENSGT00390000004927	ENSGT00940000157393	ENSGT00940000155879	ENSGT00940000156269.a.a	ENSGT00940000164564.f.a	ENSGT00940000163520.A.a.a.a.a.a.a.g.b	ENSGT00390000011854	ENSGT00940000159561.m	ENSGT00900000141196	ENSGT00530000064222.b
Perciformes_a	ANCESTRAL SPECIES	48	ENSGT00940000158745	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000161549.a.a	ENSGT00940000158601	ENSGT00940000159386	ENSGT00550000074845	ENSGT00950000182865.b.a.a	ENSGT00940000153804.B	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.a.b	ENSGT00940000155599.i.b	ENSGT00940000155369.A.d.a	ENSGT00940000156646.d	ENSGT00390000013207	ENSGT00390000004927	ENSGT00940000157393	ENSGT00940000155879	ENSGT00940000156269.a.a	ENSGT00940000164564.f.a	ENSGT00940000163520.A.a.a.a.a.a.a.g.b	ENSGT00390000011854	ENSGT00940000159561.m	ENSGT00900000141196	ENSGT00530000064222.b
Channel bull blenny	MODERN SPECIES	14	NPAS3 (ENSCGOG00000013332)	egln3 (ENSCGOG00000013359)	sptssa (ENSCGOG00000013360)	eapp (ENSCGOG00000013361)	PRKD1 (ENSCGOG00000013397)	ENSCGOG00000015193	ehd4 (ENSCGOG00000015288)	coch (ENSCGOG00000016770)	scfd1 (ENSCGOG00000016938)	g2e3 (ENSCGOG00000017712)	ccdc65 (ENSCGOG00000017717)	strn3 (ENSCGOG00000017733)	ap4s1 (ENSCGOG00000018201)	hectd1 (ENSCGOG00000018233)	HEATR5A (ENSCGOG00000018946)	hikeshi (ENSCGOG00000020116) #22	dhrs13a.1 (ENSCGOG00000020129)	dhrs13a.2 (ENSCGOG00000020222)	MDGA2 (ENSCGOG00000020243)	slc3a2b (ENSCGOG00000020793)	lrrc57 (ENSCGOG00000020832)	tyro3 (ENSCGOG00000020834)	ENSCGOG00000020858	ENSCGOG00000020860	ENSCGOG00000020864	ENSCGOG00000020884	atg14 (ENSCGOG00000020885)	tbpl2 (ENSCGOG00000020891)	jmjd7 (ENSCGOG00000020893)	lgals3b (ENSCGOG00000020931)	dact1 (ENSCGOG00000020934)
Pike perch	MODERN SPECIES	192														ENSSLUG00000019809	HEATR5A (ENSSLUG00000019887)	hikeshi (ENSSLUG00000021212) #22	slc3a2b (ENSSLUG00000021227)	ENSSLUG00000021310	dhrs13a.2 (ENSSLUG00000021627)	dhrs13a.1 (ENSSLUG00000021710)	ENSSLUG00000021724	ENSSLUG00000021727	lrrc57 (ENSSLUG00000021730)	tyro3 (ENSSLUG00000021735)	ENSSLUG00000021780	ENSSLUG00000021801	ENSSLUG00000021809	ENSSLUG00000021820	ENSSLUG00000021878	atg14 (ENSSLUG00000021891)	tbpl2 (ENSSLUG00000021915)
Cottioidei	ANCESTRAL SPECIES	66								ENSGT00950000183095.a.b.a.a	ENSGT00940000168627	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000159386	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.b	ENSGT00940000155369.A.d.a	ENSGT00940000156646.d	ENSGT00390000004927	ENSGT00940000157393	ENSGT00940000155879	ENSGT00940000156269.a.a	ENSGT00390000011854	ENSGT00940000159561.m	ENSGT00900000141196	ENSGT00940000165169.b.a	ENSGT00940000157224.ab.c	ENSGT00950000183181.B.a	ENSGT00940000162596	ENSGT00940000160102
Stickleback	MODERN SPECIES	15	timm9 (ENSGACG00000004009)	irf2bpl (ENSGACG00000004005)	ENSGACG00000003999	lgals3b (ENSGACG00000003990)	ENSGACG00000003988	jmjd7 (ENSGACG00000003975)	tbpl2 (ENSGACG00000003968)	atg14 (ENSGACG00000003943)	ENSGACG00000003926	ENSGACG00000003923	ENSGACG00000003921	ENSGACG00000003916	tyro3 (ENSGACG00000003907)	lrrc57 (ENSGACG00000003885)	ENSGACG00000003883	hikeshi (ENSGACG00000003879) #22	dhrs13a.2 (ENSGACG00000003868)
Lumpfish	MODERN SPECIES	14	ENSCLMG00005008916	ENSCLMG00005008921	cdca4 (ENSCLMG00005008922)	ahsa1b (ENSCLMG00005008924)	ENSCLMG00005008928	pgrmc2 (ENSCLMG00005008930)	asmt2 (ENSCLMG00005008932)	jade1 (ENSCLMG00005009036)	g2e3 (ENSCLMG00005009038)	scfd1 (ENSCLMG00005009049)	coch (ENSCLMG00005009065)	ENSCLMG00005009066	ap4s1 (ENSCLMG00005009067)	ENSCLMG00005009068	HEATR5A (ENSCLMG00005009093)	hikeshi (ENSCLMG00005012630) #22	dhrs13a.2 (ENSCLMG00005012631)	ENSCLMG00005012632	ENSCLMG00005012670	ENSCLMG00005013160	lrrc57 (ENSCLMG00005013161)	tyro3 (ENSCLMG00005013163)	ENSCLMG00005013233	ENSCLMG00005013235	atg14 (ENSCLMG00005013237)	tbpl2 (ENSCLMG00005013238)	jmjd7 (ENSCLMG00005013241)	ENSCLMG00005013244	dact1 (ENSCLMG00005013247)	timm9 (ENSCLMG00005013250)	arid4a (ENSCLMG00005013253)
Percomorphaceae_D	ANCESTRAL SPECIES	10	ENSGT00940000158745	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000161549.a.a	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000159386	ENSGT00940000168627	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.a.b	ENSGT00940000155599.i.b	ENSGT00940000155369.A.d.a	ENSGT00940000156646.d	ENSGT00390000012799	ENSGT00940000166431	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00550000074912	ENSGT00940000156159	ENSGT00940000160102	ENSGT00940000162596	ENSGT00950000183519	ENSGT00390000012397
Anabantaria	ANCESTRAL SPECIES	10	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000161549.a.a	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000159386	ENSGT00940000168627	ENSGT00940000153804.B	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.a.b	ENSGT00940000155599.i.b	ENSGT00940000155369.A.d.a	ENSGT00940000156646.d	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00550000074912	ENSGT00940000156159	ENSGT00940000160102	ENSGT00940000162596	ENSGT00950000183519	ENSGT00390000012397	ENSGT00950000183181.B.a
Anabantoidei	ANCESTRAL SPECIES	9	ENSGT00940000158745	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000161549.a.a	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000159386	ENSGT00940000153804.B	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.a.b	ENSGT00940000155599.i.b	ENSGT00940000155369.A.d.a	ENSGT00940000156646.d	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00550000074912	ENSGT00940000156159	ENSGT00940000160102	ENSGT00940000162596	ENSGT00390000012397	ENSGT00950000183181.B.a	ENSGT00940000165169.b.a
Climbing perch	MODERN SPECIES	13	ENSATEG00000025189	ENSATEG00000027849	ENSATEG00000016142	foxg1a (ENSATEG00000016130)	ENSATEG00000015643	ehd4 (ENSATEG00000015573)	g2e3 (ENSATEG00000015553)	scfd1 (ENSATEG00000015471)	coch (ENSATEG00000015389)	ENSATEG00000015368	strn3 (ENSATEG00000015245)	ap4s1 (ENSATEG00000015227)	hectd1 (ENSATEG00000015098)	ENSATEG00000015068	HEATR5A (ENSATEG00000014961)	ENSATEG00000014913 #22	ENSATEG00000014717	ENSATEG00000014622	ENSATEG00000014605	ENSATEG00000014580	ENSATEG00000014569	zgc:109986 (ENSATEG00000014565)	BAZ1A (ENSATEG00000014536)	ENSATEG00000028863	cfl2 (ENSATEG00000028424)	snx6 (ENSATEG00000014485)	psma3 (ENSATEG00000014448)	arid4a (ENSATEG00000014386)	timm9 (ENSATEG00000014424)	irf2bpl (ENSATEG00000025496)	dact1 (ENSATEG00000029802)
Siamese fighting fish	MODERN SPECIES	12	NPAS3 (ENSBSLG00000007614)	egln3 (ENSBSLG00000007597)	ENSBSLG00000007595	sptssa (ENSBSLG00000007592)	eapp (ENSBSLG00000007589)	ENSBSLG00000007349	foxg1a (ENSBSLG00000007331)	ehd4 (ENSBSLG00000006613)	g2e3 (ENSBSLG00000006025)	scfd1 (ENSBSLG00000005976)	coch (ENSBSLG00000005967)	strn3 (ENSBSLG00000005421)	ap4s1 (ENSBSLG00000005279)	hectd1 (ENSBSLG00000012567)	ENSBSLG00000012558	hikeshi (ENSBSLG00000011962) #22	DHRS13 (ENSBSLG00000011482)	dhrs13a.2 (ENSBSLG00000011472)	slc3a2b (ENSBSLG00000011462)	ENSBSLG00000011458	ENSBSLG00000010948	zgc:109986 (ENSBSLG00000010904)	BAZ1A (ENSBSLG00000010664)	cfl2 (ENSBSLG00000010594)	snx6 (ENSBSLG00000009550)	psma3 (ENSBSLG00000009358)	arid4a (ENSBSLG00000009126)	timm9 (ENSBSLG00000009099)	ENSBSLG00000009094	ENSBSLG00000008973	dact1 (ENSBSLG00000008942)
Zig-zag eel	MODERN SPECIES	50																ENSMAMG00000007058 #22	ENSMAMG00000007038	ENSMAMG00000007020	ENSMAMG00000007009	ENSMAMG00000007004	ENSMAMG00000025765	zgc:109986 (ENSMAMG00000006979)	BAZ1A (ENSMAMG00000006945)	cfl2 (ENSMAMG00000006926)	snx6 (ENSMAMG00000006844)	psma3 (ENSMAMG00000025722)	arid4a (ENSMAMG00000006769)	ENSMAMG00000006749	si:ch211-185a18.2 (ENSMAMG00000006578)	dact1 (ENSMAMG00000006571)	lgals3b (ENSMAMG00000006554)
Carangaria	ANCESTRAL SPECIES	10	ENSGT00940000158745	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000161549.a.a	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000159386	ENSGT00940000168627	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.a.b	ENSGT00940000155599.i.b	ENSGT00940000155369.A.d.a	ENSGT00940000156646.d	ENSGT00390000012799	ENSGT00940000166431	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00550000074912	ENSGT00940000156159	ENSGT00940000160102	ENSGT00940000162596	ENSGT00950000183181.B.a	ENSGT00940000165169.b.a
Carangaria_A	ANCESTRAL SPECIES	98		ENSGT00940000158745	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000161549.a.a	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000159386	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.a.b	ENSGT00940000155599.i.b
Barramundi perch	MODERN SPECIES	534														hectd1 (ENSLCAG00010011150)	ENSLCAG00010011174	hikeshi (ENSLCAG00010011176) #22	DHRS13 (ENSLCAG00010011180)	dhrs13a.1 (ENSLCAG00010011187)	dhrs13a.2 (ENSLCAG00010011203)	coch (ENSLCAG00010011248)	scfd1 (ENSLCAG00010011331)	ENSLCAG00010011586	g2e3 (ENSLCAG00010011593)	ehd4 (ENSLCAG00010011604)	ENSLCAG00010011611	SPTBN5 (ENSLCAG00010011625)
Seriola	ANCESTRAL SPECIES	102	ENSGT00810000125473.B	ENSGT00940000158745	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000161549.a.a	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000159386	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.a.b	ENSGT00940000155599.i.b
Yellowtail amberjack	MODERN SPECIES	2594																hikeshi (ENSSLDG00000018480) #22
Greater amberjack	MODERN SPECIES	163	ENSSDUG00000010718	PRKD1 (ENSSDUG00000010737)	foxg1a (ENSSDUG00000010776)	ENSSDUG00000010788	ENSSDUG00000010913	ehd4 (ENSSDUG00000010947)	ENSSDUG00000010967	g2e3 (ENSSDUG00000010993)	ENSSDUG00000011152	scfd1 (ENSSDUG00000011167)	coch (ENSSDUG00000011195)	strn3 (ENSSDUG00000011224)	ap4s1 (ENSSDUG00000011269)	hectd1 (ENSSDUG00000011288)	HEATR5A (ENSSDUG00000011377)	hikeshi (ENSSDUG00000011450) #22	dhrs13a.1 (ENSSDUG00000011461)	dhrs13a.2 (ENSSDUG00000011468)	ENSSDUG00000011482	ENSSDUG00000011490
Pleuronectoidei	ANCESTRAL SPECIES	5	ENSGT00940000158745	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000161549.a.a	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000159386	ENSGT00940000168627	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.b	ENSGT00940000155369.A.d.a	ENSGT00940000156646.d	ENSGT00390000012799	ENSGT00940000166431	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00550000074912	ENSGT00940000156159	ENSGT00940000160102	ENSGT00940000162596	ENSGT00950000183181.B.a	ENSGT00940000165169.b.a	ENSGT00530000064222.b
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES		sptssa (ENSCSEG00000011058)	eapp (ENSCSEG00000011062)	PRKD1 (ENSCSEG00000011076)	ENSCSEG00000011106	foxg1a (ENSCSEG00000011113)	ENSCSEG00000011116	ENSCSEG00000011139	ehd4 (ENSCSEG00000011195)	coch (ENSCSEG00000011217)	scfd1 (ENSCSEG00000011230)	g2e3 (ENSCSEG00000011272)	strn3 (ENSCSEG00000011317)	ap4s1 (ENSCSEG00000011445)	hectd1 (ENSCSEG00000011469)	HEATR5A (ENSCSEG00000011564)	hikeshi (ENSCSEG00000011650) #22	hikeshi (ENSCSEG00000011654) #22	dhrs13a.2 (ENSCSEG00000011659)	ENSCSEG00000011729	slc3a2b (ENSCSEG00000011824)	zgc:109986 (ENSCSEG00000011830)	ENSCSEG00000011841	ENSCSEG00000011854	cfl2 (ENSCSEG00000011860)	snx6 (ENSCSEG00000011868)	psma3 (ENSCSEG00000011909)	arid4a (ENSCSEG00000011930)	ENSCSEG00000011975	lrrc57 (ENSCSEG00000011983)	tyro3 (ENSCSEG00000012013)	ENSCSEG00000012077
Tongue sole	MODERN SPECIES		eapp (ENSCSEG00000011062)	PRKD1 (ENSCSEG00000011076)	ENSCSEG00000011106	foxg1a (ENSCSEG00000011113)	ENSCSEG00000011116	ENSCSEG00000011139	ehd4 (ENSCSEG00000011195)	coch (ENSCSEG00000011217)	scfd1 (ENSCSEG00000011230)	g2e3 (ENSCSEG00000011272)	strn3 (ENSCSEG00000011317)	ap4s1 (ENSCSEG00000011445)	hectd1 (ENSCSEG00000011469)	HEATR5A (ENSCSEG00000011564)	hikeshi (ENSCSEG00000011650) #22	hikeshi (ENSCSEG00000011654) #22	dhrs13a.2 (ENSCSEG00000011659)	ENSCSEG00000011729	slc3a2b (ENSCSEG00000011824)	zgc:109986 (ENSCSEG00000011830)	ENSCSEG00000011841	ENSCSEG00000011854	cfl2 (ENSCSEG00000011860)	snx6 (ENSCSEG00000011868)	psma3 (ENSCSEG00000011909)	arid4a (ENSCSEG00000011930)	ENSCSEG00000011975	lrrc57 (ENSCSEG00000011983)	tyro3 (ENSCSEG00000012013)	ENSCSEG00000012077	ENSCSEG00000012157
Turbot	MODERN SPECIES	8	ENSSMAG00000036570	ENSSMAG00000037893	ENSSMAG00000001012	ENSSMAG00000034324	snapc1b (ENSSMAG00000001021)	ENSSMAG00000028831	ENSSMAG00000024767	ENSSMAG00000037840	scfd1 (ENSSMAG00000001472)	coch (ENSSMAG00000001511)	ENSSMAG00000001535	strn3 (ENSSMAG00000001557)	ap4s1 (ENSSMAG00000001721)	hectd1 (ENSSMAG00000001750)	HEATR5A (ENSSMAG00000001841)	ENSSMAG00000001930 #22	ENSSMAG00000001974	ENSSMAG00000029463	ENSSMAG00000002079	ENSSMAG00000001071	ENSSMAG00000000840	dtd2 (ENSSMAG00000000833)	NUBPL (ENSSMAG00000000795)	ARHGAP5 (ENSSMAG00000000757)	ENSSMAG00000000960	ENSSMAG00000018689	NPAS3 (ENSSMAG00000034084)	ENSSMAG00000034079	ENSSMAG00000002873	egln3 (ENSSMAG00000002860)	SPTSSA (ENSSMAG00000002830)
Ovalentaria	ANCESTRAL SPECIES	10	ENSGT00940000158745	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000161549.a.a	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000178078	ENSGT00940000159386	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.a.b	ENSGT00940000155599.i.b	ENSGT00940000155369.A.d.a	ENSGT00940000156646.d	ENSGT00390000012799	ENSGT00940000166431	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00550000074912	ENSGT00940000156159	ENSGT00940000160102	ENSGT00940000162596	ENSGT00940000165313	ENSGT00390000012397
Ovalentaria_B	ANCESTRAL SPECIES	24	ENSGT00940000158745	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000161549.a.a	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000178078	ENSGT00940000159386	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.a.b	ENSGT00940000155599.i.b	ENSGT00940000155369.A.d.a	ENSGT00940000156646.d	ENSGT00390000012799	ENSGT00940000166431	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00550000074912	ENSGT00940000156159	ENSGT00940000160102	ENSGT00940000162596	ENSGT00940000165313	ENSGT00390000012397
Pomacentridae	ANCESTRAL SPECIES	78	ENSGT00940000158051.h	ENSGT00940000158745	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00950000183024.a.b.a	ENSGT00940000161549.a.a	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000178078	ENSGT00940000159386	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.a.b	ENSGT00940000155599.i.b	ENSGT00940000155369.A.d.a	ENSGT00940000156646.d	ENSGT00390000012799	ENSGT00940000166431	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00550000074912	ENSGT00940000156159	ENSGT00940000160102	ENSGT00390000012397	ENSGT00940000162596	ENSGT00950000183181.B.a
Pomacentridae_A	ANCESTRAL SPECIES	93		ENSGT00940000158745	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00950000183024.a.b.a	ENSGT00940000161549.a.a	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000178078	ENSGT00940000159386	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.a.b.a	ENSGT00940000155599.i.a.b.b	ENSGT00940000155599.i.b	ENSGT00940000155369.A.d.a	ENSGT00940000156646.d	ENSGT00390000012799	ENSGT00940000166431	ENSGT00940000158135	ENSGT00950000183000.c.b	ENSGT00940000154940	ENSGT00550000074912	ENSGT00940000156159	ENSGT00940000160102	ENSGT00390000012397	ENSGT00940000162596
Spiny chromis	DUPLICATION
Spiny chromis	DUPLICATION
Spiny chromis	MODERN SPECIES	3073																hikeshi (ENSAPOG00000011829) #22
Spiny chromis	MODERN SPECIES	4095																hikeshi (ENSAPOG00000019709) #22
Spiny chromis	MODERN SPECIES	4097																hikeshi (ENSAPOG00000000812) #22
Amphiprion	ANCESTRAL SPECIES	181		ENSGT00940000159386	ENSGT00940000178078	ENSGT00550000074845	ENSGT00950000182865.b.a.a	ENSGT00940000158601	ENSGT00940000161549.a.a	ENSGT00950000183024.a.b.a	ENSGT00390000001332	ENSGT00390000002766.b.b	ENSGT00940000158745.p	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.a.b.a	ENSGT00940000155599.i.a.b.b	ENSGT00940000155599.i.b	ENSGT00940000155369.A.d.a	ENSGT00940000156646.d	ENSGT00390000012799	ENSGT00940000158135	ENSGT00950000183000.c.b
Orange clownfish	MODERN SPECIES	9	ENSAPEG00000013439	ENSAPEG00000013375	ENSAPEG00000013356	ehd4 (ENSAPEG00000013326)	g2e3 (ENSAPEG00000013279)	scfd1 (ENSAPEG00000013158)	ENSAPEG00000013135	coch (ENSAPEG00000013099)	eapp (ENSAPEG00000013072)	ENSAPEG00000013061	sptssa (ENSAPEG00000013049)	strn3 (ENSAPEG00000012987)	ap4s1 (ENSAPEG00000012966)	hectd1 (ENSAPEG00000012851)	HEATR5A (ENSAPEG00000012740)	hikeshi (ENSAPEG00000012684) #22	DHRS13 (ENSAPEG00000012661)	dhrs13a.1 (ENSAPEG00000012638)	ENSAPEG00000012622	ENSAPEG00000012613	dhrs13a.2 (ENSAPEG00000012591)	MDGA2 (ENSAPEG00000012549)	ENSAPEG00000012525	ENSAPEG00000012506	slc3a2b (ENSAPEG00000012493)	zgc:109986 (ENSAPEG00000012482)	BAZ1A (ENSAPEG00000012434)	cfl2 (ENSAPEG00000012418)	IFT43 (ENSAPEG00000012334)	GPATCH2L (ENSAPEG00000012331)	ESRRB (ENSAPEG00000012314)
Clown anemonefish	DUPLICATION
Clown anemonefish	MODERN SPECIES	1841	opa3 (ENSAOCG00000006679)	ppp1r13l (ENSAOCG00000006665)	TMEM91 (ENSAOCG00000006610)	exosc5 (ENSAOCG00000006601)	ENSAOCG00000006582	bckdha (ENSAOCG00000006566)	B3GNT8 (ENSAOCG00000006529)	napab (ENSAOCG00000006508)	ENSAOCG00000000307	EHD2 (ENSAOCG00000006422)	ENSAOCG00000006412	nup88 (ENSAOCG00000006396)	psmd8 (ENSAOCG00000006374)	spred3 (ENSAOCG00000006330)	dhx34 (ENSAOCG00000006310)	hikeshi (ENSAOCG00000006260) #22	hikeshi (ENSAOCG00000006248) #22	dhrs13a.1 (ENSAOCG00000006241)	dhrs13a.1 (ENSAOCG00000006233)	dhrs13a.2 (ENSAOCG00000006223)
Clown anemonefish	DUPLICATION
Clown anemonefish	MODERN SPECIES	2747																hikeshi (ENSAOCG00000000430) #22
Clown anemonefish	MODERN SPECIES	1841	ppp1r13l (ENSAOCG00000006665)	TMEM91 (ENSAOCG00000006610)	exosc5 (ENSAOCG00000006601)	ENSAOCG00000006582	bckdha (ENSAOCG00000006566)	B3GNT8 (ENSAOCG00000006529)	napab (ENSAOCG00000006508)	ENSAOCG00000000307	EHD2 (ENSAOCG00000006422)	ENSAOCG00000006412	nup88 (ENSAOCG00000006396)	psmd8 (ENSAOCG00000006374)	spred3 (ENSAOCG00000006330)	dhx34 (ENSAOCG00000006310)	hikeshi (ENSAOCG00000006260) #22	hikeshi (ENSAOCG00000006248) #22	dhrs13a.1 (ENSAOCG00000006241)	dhrs13a.1 (ENSAOCG00000006233)	dhrs13a.2 (ENSAOCG00000006223)
Cichlidae	ANCESTRAL SPECIES	37	ENSGT00940000158051	ENSGT00940000158745	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000161549.a.a	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000159386	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22	ENSGT00940000155599.i.b	ENSGT00940000155369.A.d.a	ENSGT00940000156646.d	ENSGT00390000012799	ENSGT00390000015102.a.b	ENSGT00940000155554	ENSGT00940000161060	ENSGT00940000153577.B	ENSGT00940000154482.b.b.b	ENSGT00990000204009	ENSGT00940000154618	ENSGT00940000158221
Midas cichlid	MODERN SPECIES	272							ENSACIG00000011838	scfd1 (ENSACIG00000011848)	coch (ENSACIG00000011889)	strn3 (ENSACIG00000011917)	ap4s1 (ENSACIG00000011954)	ENSACIG00000011962	ENSACIG00000011980	HEATR5A (ENSACIG00000011999)	ENSACIG00000012086	hikeshi (ENSACIG00000012196) #22	dhrs13a.2 (ENSACIG00000012209)	MDGA2 (ENSACIG00000012232)	ENSACIG00000012270	slc3a2b (ENSACIG00000012277)	zgc:109986 (ENSACIG00000012304)	ak7b (ENSACIG00000012334)	vrk1 (ENSACIG00000012393)
Pseudocrenilabrinae	ANCESTRAL SPECIES	8	ENSGT00940000158745	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000157038.a.b.u.b	ENSGT00940000161549.a.a	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000159386	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22
Nile tilapia	MODERN SPECIES	10	egln3 (ENSONIG00000035400)	sptssa (ENSONIG00000036220)	eapp (ENSONIG00000001809)	PRKD1 (ENSONIG00000001814)	foxg1a (ENSONIG00000029950)	ENSONIG00000038497	ENSONIG00000001828	ehd4 (ENSONIG00000038089)	g2e3 (ENSONIG00000001857)	scfd1 (ENSONIG00000001862)	coch (ENSONIG00000001879)	strn3 (ENSONIG00000001884)	ap4s1 (ENSONIG00000001896)	hectd1 (ENSONIG00000001899)	HEATR5A (ENSONIG00000001918)	hikeshi (ENSONIG00000020832) #22	slc3a2b (ENSONIG00000001729)	ENSONIG00000032516	ENSONIG00000030475	zgc:109986 (ENSONIG00000001727)	ENSONIG00000042145	ak7b (ENSONIG00000001719)	ENSONIG00000041208	ENSONIG00000034768	ENSONIG00000031142	ENSONIG00000028025	map3k7 (ENSONIG00000011334)	GPR135 (ENSONIG00000020519)	HHIPL1 (ENSONIG00000011341)	osr1 (ENSONIG00000011343)	ENSONIG00000042868
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	6	ENSGT00940000158745	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000157038.a.b.u.b	ENSGT00940000161549.a.a	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000159386	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22
Lyretail cichlid	MODERN SPECIES	299	sptssa (ENSNBRG00000022727)	eapp (ENSNBRG00000022713)	PRKD1 (ENSNBRG00000022691)	foxg1a (ENSNBRG00000022682)	ENSNBRG00000022651	ENSNBRG00000022636	ehd4 (ENSNBRG00000022623)	g2e3 (ENSNBRG00000022590)	ENSNBRG00000022568	scfd1 (ENSNBRG00000022555)	coch (ENSNBRG00000022518)	strn3 (ENSNBRG00000022491)	ap4s1 (ENSNBRG00000022483)	ENSNBRG00000022477	HEATR5A (ENSNBRG00000022437)	hikeshi (ENSNBRG00000022423) #22	galcb (ENSNBRG00000022375)	ENSNBRG00000022352	dicer1 (ENSNBRG00000022306)	ENSNBRG00000022281	syne3 (ENSNBRG00000022250)	gabrr2a (ENSNBRG00000022229)	rragd (ENSNBRG00000022211)	gja10a (ENSNBRG00000022195)	ENSNBRG00000022187	ENSNBRG00000022175	GPR135 (ENSNBRG00000022167)	HHIPL1 (ENSNBRG00000022132)	osr1 (ENSNBRG00000022119)	ENSNBRG00000022105	ENSNBRG00000022038
Haplochromini	ANCESTRAL SPECIES	42	ENSGT00940000158745	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000157038.a.b.u.b	ENSGT00940000161549.a.a	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000159386	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22
Haplochromini_A	ANCESTRAL SPECIES	44	ENSGT00940000158051	ENSGT00940000158745	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000161549.a.a	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000159386	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22
Haplochromini_B	ANCESTRAL SPECIES	119						ENSGT00940000160678.a	ENSGT00940000161549.a.a	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000159386	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000006205.b	ENSGT00390000004056 #22
Eastern happy	MODERN SPECIES	5	usf1l (ENSACLG00000018193)	ENSACLG00000018024	CLCN2 (ENSACLG00000017984)	ENSACLG00000017974	ENSACLG00000017960	foxg1a (ENSACLG00000017908)	ENSACLG00000017296	ehd4 (ENSACLG00000017182)	g2e3 (ENSACLG00000017147)	scfd1 (ENSACLG00000017070)	coch (ENSACLG00000016965)	strn3 (ENSACLG00000016888)	ap4s1 (ENSACLG00000016857)	hectd1 (ENSACLG00000016633)	HEATR5A (ENSACLG00000016427)	hikeshi (ENSACLG00000016412) #22	ENSACLG00000016344	ENSACLG00000016329	tbcela (ENSACLG00000016175)	ENSACLG00000016164	usp2a (ENSACLG00000016110)	TLCD3A (ENSACLG00000016090)	gemin4 (ENSACLG00000016073)	ENSACLG00000016049	ENSACLG00000016018	ENSACLG00000015935	ENSACLG00000015922	smtnl (ENSACLG00000015818)	ENSACLG00000015809	tmem199 (ENSACLG00000015770)	poldip2 (ENSACLG00000015709)
P. nyererei	MODERN SPECIES	324	NPAS3 (ENSPNYG00000014398)	egln3 (ENSPNYG00000014374)	sptssa (ENSPNYG00000014367)	eapp (ENSPNYG00000014361)	PRKD1 (ENSPNYG00000014311)	foxg1a (ENSPNYG00000014291)	ENSPNYG00000013995	ehd4 (ENSPNYG00000013916)	g2e3 (ENSPNYG00000013844)	scfd1 (ENSPNYG00000013788)	coch (ENSPNYG00000013761)	strn3 (ENSPNYG00000013710)	ap4s1 (ENSPNYG00000013670)	hectd1 (ENSPNYG00000013578)	HEATR5A (ENSPNYG00000013359)	hikeshi (ENSPNYG00000013322) #22
Burton s mouthbrooder	MODERN SPECIES	1236													ENSHBUG00000008860	ENSHBUG00000008844	HEATR5A (ENSHBUG00000008830)	hikeshi (ENSHBUG00000008699) #22
Atherinomorphae	ANCESTRAL SPECIES	39	ENSGT00940000156159	ENSGT00550000074912	ENSGT00940000154940	ENSGT00950000183000.c.b	ENSGT00940000158135	ENSGT00390000012799	ENSGT00940000156646.d	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000178078	ENSGT00940000159386	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000004056 #22	ENSGT00940000155369.A.d.a
Oryzias	ANCESTRAL SPECIES	3	ENSGT00940000156159	ENSGT00550000074912	ENSGT00940000154940	ENSGT00950000183000.c.b	ENSGT00940000158135	ENSGT00390000012799	ENSGT00940000156646.d	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000178078	ENSGT00940000159386	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000004056 #22	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000153168.C.a.b	ENSGT00940000160181.i	ENSGT00940000158993	ENSGT00390000004599	ENSGT00390000008624	ENSGT00940000158221	ENSGT00990000204009	ENSGT00940000154618	ENSGT00940000154482.b.b.b.p	ENSGT00940000153577.B	ENSGT00940000161060	ENSGT00940000155554	ENSGT00390000015102.a.b
Oryzias_b	ANCESTRAL SPECIES	12	ENSGT00940000160102	ENSGT00940000156159	ENSGT00550000074912	ENSGT00940000154940	ENSGT00950000183000.c.b	ENSGT00940000158135	ENSGT00390000012799	ENSGT00940000156646.d	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000159386	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000004056 #22	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000153168.C.a.b	ENSGT00940000160181.i	ENSGT00940000158993	ENSGT00390000004599	ENSGT00390000008624	ENSGT00940000158221	ENSGT00990000204009	ENSGT00940000154618	ENSGT00940000154482.b.b.b.p	ENSGT00940000153577.B	ENSGT00940000161060	ENSGT00940000155554	ENSGT00390000015102.a.b
Javanese ricefish	MODERN SPECIES	14	ENSOJAG00000017930	ENSOJAG00000017907	arid4a (ENSOJAG00000017865)	psma3 (ENSOJAG00000017765)	snx6 (ENSOJAG00000017479)	cfl2 (ENSOJAG00000017459)	zgc:109986 (ENSOJAG00000017424)	ENSOJAG00000017419	ehd4 (ENSOJAG00000017357)	g2e3 (ENSOJAG00000017345)	scfd1 (ENSOJAG00000016699)	coch (ENSOJAG00000016617)	strn3 (ENSOJAG00000015993)	ap4s1 (ENSOJAG00000015956)	ENSOJAG00000015909	hikeshi (ENSOJAG00000015904) #22	PRKD1 (ENSOJAG00000015216)	foxg1a (ENSOJAG00000015190)	YIPF7 (ENSOJAG00000015184)	rdh14a (ENSOJAG00000015180)	numb (ENSOJAG00000015133)	exd2 (ENSOJAG00000015074)	COQ8A (ENSOJAG00000014975)	TATDN3 (ENSOJAG00000014917)	fuca2 (ENSOJAG00000014879)	ENSOJAG00000014800	txlnbb (ENSOJAG00000014744)	dusp23a (ENSOJAG00000014725)	gng2 (ENSOJAG00000014696)	frmd6 (ENSOJAG00000014625)	ENSOJAG00000020877
Oryzias_a	ANCESTRAL SPECIES	11	ENSGT00940000156159	ENSGT00550000074912	ENSGT00940000154940	ENSGT00950000183000.c.b	ENSGT00940000158135	ENSGT00390000012799	ENSGT00940000156646.d	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000178078	ENSGT00940000159386	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000004056 #22	ENSGT00950000183024.a.b.a	ENSGT00940000160678.a	ENSGT00940000153168.C.a.b	ENSGT00940000160181.i	ENSGT00940000158993	ENSGT00390000004599	ENSGT00390000008624	ENSGT00940000158221	ENSGT00990000204009	ENSGT00940000154618	ENSGT00940000154482.b.b.b.p	ENSGT00940000153577.B	ENSGT00940000161060	ENSGT00940000155554	ENSGT00390000015102.a.b
Chinese medaka	MODERN SPECIES	631	DACT1 (ENSOSIG00000018120)	irf2bpl (ENSOSIG00000018078)	timm9 (ENSOSIG00000018069)	ENSOSIG00000018060	psma3 (ENSOSIG00000018012)	snx6 (ENSOSIG00000017956)	cfl2 (ENSOSIG00000017937)	zgc:109986 (ENSOSIG00000017928)	ENSOSIG00000017806	ehd4 (ENSOSIG00000017520)	g2e3 (ENSOSIG00000017364)	coch (ENSOSIG00000017074)	strn3 (ENSOSIG00000013379)	ap4s1 (ENSOSIG00000013343)	ENSOSIG00000013288	hikeshi (ENSOSIG00000013285) #22	PRKD1 (ENSOSIG00000012200)	foxg1a (ENSOSIG00000012189)	zgc:123321 (ENSOSIG00000012188)	osr1 (ENSOSIG00000012187)	alkbh1 (ENSOSIG00000012185)	slirp (ENSOSIG00000012183)	adck1 (ENSOSIG00000012077)	ENSOSIG00000012073	nrxn3a (ENSOSIG00000011783)	dio2 (ENSOSIG00000011773)	dio2 (ENSOSIG00000011771)	BCL11B (ENSOSIG00000011749)	vrk1 (ENSOSIG00000011152)	ENSOSIG00000011146	ak7b (ENSOSIG00000011133)
Japanese Medaka HdrR	MODERN SPECIES	14	ENSORLG00000010245	psma3 (ENSORLG00000010288)	snx6 (ENSORLG00000010318)	cfl2 (ENSORLG00000010332)	BAZ1A (ENSORLG00000010374)	zgc:109986 (ENSORLG00000010399)	ENSORLG00000010405	ehd4 (ENSORLG00000010433)	g2e3 (ENSORLG00000010482)	scfd1 (ENSORLG00000010536)	ENSORLG00000022055	coch (ENSORLG00000010591)	strn3 (ENSORLG00000010638)	ap4s1 (ENSORLG00000010658)	hectd1 (ENSORLG00000010702)	hikeshi (ENSORLG00000010707) #22	ENSORLG00000023329	ENSORLG00000027976	ENSORLG00000010716	foxg1a (ENSORLG00000010723)	zgc:123321 (ENSORLG00000029255)	ENSORLG00000029926	ENSORLG00000027646	ENSORLG00000028933	osr1 (ENSORLG00000010734)	alkbh1 (ENSORLG00000010750)	slirp (ENSORLG00000010761)	adck1 (ENSORLG00000010777)	nrxn3a (ENSORLG00000010813)	ENSORLG00000029247	ENSORLG00000026409
Cyprinodontiformes	ANCESTRAL SPECIES	40	ENSGT00940000156159	ENSGT00550000074912	ENSGT00940000154940	ENSGT00950000183000.c.b	ENSGT00940000158135	ENSGT00390000012799	ENSGT00940000156646.d	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000178078	ENSGT00940000159386	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000004056 #22	ENSGT00940000155369.A.d.a
Aplocheiloidei	ANCESTRAL SPECIES	107	ENSGT00940000156159	ENSGT00550000074912	ENSGT00940000154940	ENSGT00950000183000.c.b	ENSGT00940000158135	ENSGT00390000012799	ENSGT00940000156646.d	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00940000178078	ENSGT00940000159386	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000004056 #22	ENSGT00940000155369.A.d.a
Mangrove rivulus	MODERN SPECIES	614								ENSKMAG00000008965	g2e3 (ENSKMAG00000008931)	scfd1 (ENSKMAG00000008868)	ENSKMAG00000008846	coch (ENSKMAG00000008818)	strn3 (ENSKMAG00000008791)	ap4s1 (ENSKMAG00000008756)	hectd1 (ENSKMAG00000008636)	hikeshi (ENSKMAG00000008610) #22	ENSKMAG00000008532
Cyprinodontoidei	ANCESTRAL SPECIES	51	ENSGT00390000012397	ENSGT00940000160102	ENSGT00940000156159	ENSGT00550000074912	ENSGT00940000154940	ENSGT00950000183000.c.b	ENSGT00940000158135	ENSGT00390000012799	ENSGT00940000156646.d	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000004056 #22	ENSGT00940000165169.b.a	ENSGT00530000064222.b	ENSGT00900000141196	ENSGT00940000160678.a	ENSGT00950000183024.a.b.a	ENSGT00390000001332	ENSGT00390000002766.b.b	ENSGT00940000158745	ENSGT00940000158051	ENSGT00810000125473.B
Poeciliinae	ANCESTRAL SPECIES	8	ENSGT00940000162596	ENSGT00940000160102	ENSGT00940000156159	ENSGT00550000074912	ENSGT00940000154940	ENSGT00950000183000.c.b	ENSGT00940000158135	ENSGT00390000012799	ENSGT00940000156646.d	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000004056 #22	ENSGT00940000165169.b.a	ENSGT00530000064222.b	ENSGT00900000141196	ENSGT00940000160678.a	ENSGT00950000183024.a.b.a	ENSGT00390000001332	ENSGT00390000002766.b.b	ENSGT00940000158745	ENSGT00940000158051	ENSGT00810000125473.B	ENSGT00390000018691.c	ENSGT01030000234620.a.b.a	ENSGT00940000158836.a.a	ENSGT00940000164854.a	ENSGT00940000156116.A
Poecilia	ANCESTRAL SPECIES	57	ENSGT00940000162596	ENSGT00940000160102	ENSGT00940000156159	ENSGT00550000074912	ENSGT00940000154940	ENSGT00950000183000.c.b	ENSGT00940000158135	ENSGT00390000012799	ENSGT00940000156646.d	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000004056 #22	ENSGT00940000165169.b.a	ENSGT00530000064222.b	ENSGT00900000141196	ENSGT00940000160678.a	ENSGT00950000183024.a.b.a	ENSGT00390000001332	ENSGT00390000002766.b.b	ENSGT00940000158745	ENSGT00940000158051	ENSGT00810000125473.B	ENSGT00390000018691.c	ENSGT01030000234620.a.b.a	ENSGT00940000158836.a.a	ENSGT00940000164854.a	ENSGT00940000156116.A
Guppy	MODERN SPECIES	453	ENSPREG00000003986	ENSPREG00000003879	psma3 (ENSPREG00000003841)	snx6 (ENSPREG00000003810)	cfl2 (ENSPREG00000003752)	BAZ1A (ENSPREG00000003601)	zgc:109986 (ENSPREG00000003548)	slc3a2b (ENSPREG00000003533)	ehd4 (ENSPREG00000003513)	g2e3 (ENSPREG00000003497)	ENSPREG00000003478	scfd1 (ENSPREG00000003386)	strn3 (ENSPREG00000003359)	ap4s1 (ENSPREG00000003331)	hectd1 (ENSPREG00000003161)	hikeshi (ENSPREG00000003130) #22	ENSPREG00000003117	jmjd7 (ENSPREG00000003079)	foxg1a (ENSPREG00000003063)	ENSPREG00000003042	PRKD1 (ENSPREG00000003011)	eapp (ENSPREG00000002981)	sptssa (ENSPREG00000002968)	egln3 (ENSPREG00000002945)	NPAS3 (ENSPREG00000002851)	AKAP6 (ENSPREG00000002776)	snapc1b (ENSPREG00000002744)	ppp2r5eb (ENSPREG00000002688)	SGPP1 (ENSPREG00000002668)	ENSPREG00000002659	ENSPREG00000002598
NAME_6	ANCESTRAL SPECIES	163	ENSGT00940000162596	ENSGT00940000160102	ENSGT00940000156159	ENSGT00550000074912	ENSGT00940000154940	ENSGT00950000183000.c.b	ENSGT00940000158135	ENSGT00390000012799	ENSGT00940000156646.d	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000004056 #22	ENSGT00940000165169.b.a	ENSGT00530000064222.b	ENSGT00900000141196	ENSGT00940000160678.a	ENSGT00950000183024.a.b.a	ENSGT00390000001332	ENSGT00390000002766.b.b	ENSGT00940000158745	ENSGT00940000158051	ENSGT00810000125473.B	ENSGT01030000234620.a.b.a	ENSGT00940000158836.a.a	ENSGT00940000164854.a
Amazon molly	MODERN SPECIES	439																hikeshi (ENSPFOG00000019982) #22	lgals3b (ENSPFOG00000011393)	fbxo34 (ENSPFOG00000022150)	jmjd7 (ENSPFOG00000011317)	foxg1a (ENSPFOG00000011287)	PRKD1 (ENSPFOG00000010961)	eapp (ENSPFOG00000010918)	sptssa (ENSPFOG00000010915)	egln3 (ENSPFOG00000010877)	NPAS3 (ENSPFOG00000010784)	AKAP6 (ENSPFOG00000010644)	ENSPFOG00000010556	ppp2r5eb (ENSPFOG00000010367)	SGPP1 (ENSPFOG00000010284)	ENSPFOG00000009141
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	372	ENSPLAG00000003381	timm9 (ENSPLAG00000003410)	arid4a (ENSPLAG00000003432)	psma3 (ENSPLAG00000003463)	snx6 (ENSPLAG00000003489)	cfl2 (ENSPLAG00000003498)	BAZ1A (ENSPLAG00000003514)	zgc:109986 (ENSPLAG00000003536)	slc3a2b (ENSPLAG00000003555)	ehd4 (ENSPLAG00000003565)	g2e3 (ENSPLAG00000000532)	scfd1 (ENSPLAG00000003632)	strn3 (ENSPLAG00000003667)	ap4s1 (ENSPLAG00000003677)	hectd1 (ENSPLAG00000003762)	hikeshi (ENSPLAG00000003779) #22	lgals3b (ENSPLAG00000003808)
Sailfin molly	MODERN SPECIES	1771														ENSPLAG00000003769	NPFFR1 (ENSPLAG00000003783)	hikeshi (ENSPLAG00000003795) #22	lgals3b (ENSPLAG00000000608)	fbxo34 (ENSPLAG00000003827)	jmjd7 (ENSPLAG00000003844)	foxg1a (ENSPLAG00000003857)
NAME_4	ANCESTRAL SPECIES	124	ENSGT00940000162596	ENSGT00940000160102	ENSGT00940000156159	ENSGT00550000074912	ENSGT00940000154940	ENSGT00950000183000.c.b	ENSGT00940000158135	ENSGT00390000012799	ENSGT00940000156646.d	ENSGT00940000158601	ENSGT00950000182865.b.a.a	ENSGT00550000074845	ENSGT00950000183095.a.b.a.a	ENSGT00970000193421.B	ENSGT00940000156572	ENSGT00390000004056 #22	ENSGT00940000165169.b.a	ENSGT00530000064222.b	ENSGT00900000141196	ENSGT00940000160678.a
Sheepshead minnow	MODERN SPECIES	705	timm9 (ENSCVAG00000007908)	ENSCVAG00000000213	psma3 (ENSCVAG00000007866)	snx6 (ENSCVAG00000007836)	cfl2 (ENSCVAG00000007753)	ENSCVAG00000000639	zgc:109986 (ENSCVAG00000007198)	ENSCVAG00000007172	strn3 (ENSCVAG00000007148)	scfd1 (ENSCVAG00000007054)	g2e3 (ENSCVAG00000007007)	ehd4 (ENSCVAG00000006962)	slc3a2b (ENSCVAG00000006935)	ENSCVAG00000006850	ENSCVAG00000006844	hikeshi (ENSCVAG00000000912) #22	ENSCVAG00000006805	fbxo34 (ENSCVAG00000006743)	jmjd7 (ENSCVAG00000006736)	foxg1a (ENSCVAG00000006715)
Mummichog	DUPLICATION
Mummichog	MODERN SPECIES	2434	dact1 (ENSFHEG00000004639)	irf2bpl (ENSFHEG00000004684)	timm9 (ENSFHEG00000004703)	arid4a (ENSFHEG00000004741)	psma3 (ENSFHEG00000004782)	snx6 (ENSFHEG00000004824)	cfl2 (ENSFHEG00000004854)	BAZ1A (ENSFHEG00000004873)	zgc:109986 (ENSFHEG00000004880)	slc3a2b (ENSFHEG00000004886)	ehd4 (ENSFHEG00000004908)	ENSFHEG00000004922	strn3 (ENSFHEG00000004993)	ap4s1 (ENSFHEG00000005021)	hectd1 (ENSFHEG00000005109)	hikeshi (ENSFHEG00000005130) #22	hikeshi (ENSFHEG00000005142) #22	lgals3b (ENSFHEG00000005165)	fbxo34 (ENSFHEG00000005190)	jmjd7 (ENSFHEG00000005212)	foxg1a (ENSFHEG00000005233)
Mummichog	MODERN SPECIES	2434	irf2bpl (ENSFHEG00000004684)	timm9 (ENSFHEG00000004703)	arid4a (ENSFHEG00000004741)	psma3 (ENSFHEG00000004782)	snx6 (ENSFHEG00000004824)	cfl2 (ENSFHEG00000004854)	BAZ1A (ENSFHEG00000004873)	zgc:109986 (ENSFHEG00000004880)	slc3a2b (ENSFHEG00000004886)	ehd4 (ENSFHEG00000004908)	ENSFHEG00000004922	strn3 (ENSFHEG00000004993)	ap4s1 (ENSFHEG00000005021)	hectd1 (ENSFHEG00000005109)	hikeshi (ENSFHEG00000005130) #22	hikeshi (ENSFHEG00000005142) #22	lgals3b (ENSFHEG00000005165)	fbxo34 (ENSFHEG00000005190)	jmjd7 (ENSFHEG00000005212)	foxg1a (ENSFHEG00000005233)
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	43	sptssa (ENSHCOG00000021055)	eapp (ENSHCOG00000021078)	ENSHCOG00000021223	foxg1a (ENSHCOG00000021221)	ehd4 (ENSHCOG00000021219)	g2e3 (ENSHCOG00000021216)	scfd1 (ENSHCOG00000021210)	coch (ENSHCOG00000021205)	ENSHCOG00000021203	strn3 (ENSHCOG00000021201)	ap4s1 (ENSHCOG00000021199)	ENSHCOG00000021198	ENSHCOG00000021196	ENSHCOG00000021195	ENSHCOG00000021193	hikeshi (ENSHCOG00000021191) #22	hikeshi (ENSHCOG00000021190) #22	ENSHCOG00000021188	ENSHCOG00000021186	ENSHCOG00000021183	zgc:109986 (ENSHCOG00000021181)	BAZ1A (ENSHCOG00000021177)	cfl2 (ENSHCOG00000021173)	ENSHCOG00000021171	snx6 (ENSHCOG00000021168)	psma3 (ENSHCOG00000021162)	ENSHCOG00000021160	ENSHCOG00000021157	timm9 (ENSHCOG00000021153)	irf2bpl (ENSHCOG00000021152)	lgals3b (ENSHCOG00000021150)
Tiger tail seahorse	MODERN SPECIES	43	eapp (ENSHCOG00000021078)	ENSHCOG00000021223	foxg1a (ENSHCOG00000021221)	ehd4 (ENSHCOG00000021219)	g2e3 (ENSHCOG00000021216)	scfd1 (ENSHCOG00000021210)	coch (ENSHCOG00000021205)	ENSHCOG00000021203	strn3 (ENSHCOG00000021201)	ap4s1 (ENSHCOG00000021199)	ENSHCOG00000021198	ENSHCOG00000021196	ENSHCOG00000021195	ENSHCOG00000021193	hikeshi (ENSHCOG00000021191) #22	hikeshi (ENSHCOG00000021190) #22	ENSHCOG00000021188	ENSHCOG00000021186	ENSHCOG00000021183	zgc:109986 (ENSHCOG00000021181)	BAZ1A (ENSHCOG00000021177)	cfl2 (ENSHCOG00000021173)	ENSHCOG00000021171	snx6 (ENSHCOG00000021168)	psma3 (ENSHCOG00000021162)	ENSHCOG00000021160	ENSHCOG00000021157	timm9 (ENSHCOG00000021153)	irf2bpl (ENSHCOG00000021152)	lgals3b (ENSHCOG00000021150)	fbxo34 (ENSHCOG00000021148)
Pinecone sodierfish	MODERN SPECIES	14	foxg1a (ENSMMDG00005011409)	PRKD1 (ENSMMDG00005010830)	eapp (ENSMMDG00005010804)	ENSMMDG00005010801	ENSMMDG00005010798	ENSMMDG00005010797	ENSMMDG00005010795	ENSMMDG00005010794	ENSMMDG00005010792	ENSMMDG00005010791	ENSMMDG00005010789	ENSMMDG00005010787	strn3 (ENSMMDG00005010641)	hectd1 (ENSMMDG00005010633)	HEATR5A (ENSMMDG00005010601)	hikeshi (ENSMMDG00005010574) #22	DHRS13 (ENSMMDG00005010194)	slc3a2b (ENSMMDG00005010007)	ENSMMDG00005009987	ENSMMDG00005009985	ENSMMDG00005009983	ENSMMDG00005009982	ENSMMDG00005009981	ENSMMDG00005009979	ENSMMDG00005009978	ENSMMDG00005009975	ENSMMDG00005009970	ENSMMDG00005009965	ENSMMDG00005009961	ENSMMDG00005009951	tyro3 (ENSMMDG00005009690)
Cod	MODERN SPECIES	18	ENSGMOG00000019814	ENSGMOG00000036276	ENSGMOG00000030535	ENSGMOG00000028819	ENSGMOG00000023565	ENSGMOG00000024480	ENSGMOG00000034342	ENSGMOG00000014910	coch (ENSGMOG00000001380)	ENSGMOG00000006205	g2e3 (ENSGMOG00000006176)	strn3 (ENSGMOG00000006143)	ap4s1 (ENSGMOG00000006133)	hectd1 (ENSGMOG00000006063)	HEATR5A (ENSGMOG00000033228)	ENSGMOG00000022996 #22	ENSGMOG00000006936	ENSGMOG00000014294	ENSGMOG00000031559	ENSGMOG00000006507	ENSGMOG00000006518	tyro3 (ENSGMOG00000013831)	ENSGMOG00000023984	ENSGMOG00000007697	ENSGMOG00000027362	jmjd7 (ENSGMOG00000004910)	tbpl2 (ENSGMOG00000004886)	atg14 (ENSGMOG00000028864)	lgals3b (ENSGMOG00000025396)	ENSGMOG00000032753	ENSGMOG00000034353
Protacanthopterygii	ANCESTRAL SPECIES	66	ENSGT00940000155502	ENSGT00390000003338	ENSGT00940000161508.b	ENSGT00940000155126.s.a	ENSGT00390000004553.f	ENSGT00940000160059.a.b.a	ENSGT00550000075037	ENSGT00950000183165.a.a.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00390000001718.b	ENSGT01000000221844	ENSGT00550000074981	ENSGT01000000214434.B.a.b	ENSGT00990000204351	ENSGT00940000155749.d	ENSGT00390000004056 #22	ENSGT00510000047334 #21	ENSGT00940000153695.B	ENSGT00390000018525.a.b.e.a	ENSGT00940000160000	ENSGT00390000002188	ENSGT00390000017916	ENSGT00940000155515.a.a	ENSGT00390000008812.a.b	ENSGT00940000155248.vb.f	ENSGT00390000012731.a.b.i	ENSGT00390000009987	ENSGT00940000153514.b.m.b	ENSGT00950000183014.f.a	ENSGT00940000162403	ENSGT00980000202691
Salmoninae	ANCESTRAL SPECIES	57	ENSGT00940000161508.b.o.b.a	ENSGT00390000003338.z	ENSGT00940000161508.b.o.a	ENSGT00940000155126.s.a.k.b	ENSGT00390000004553.f.b.a.a	ENSGT00940000160059.a.b.a	ENSGT00550000075037.b	ENSGT00950000183165.a.a.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00390000001718.b.b.a.a	ENSGT01000000221844	ENSGT00550000074981	ENSGT01000000214434.B.a.b.a	ENSGT00990000204351	ENSGT00940000155749.d	ENSGT00390000004056 #22	ENSGT00510000047334 #21	ENSGT00940000153695.B.d	ENSGT00940000160000.e	ENSGT00390000002188	ENSGT00390000017916	ENSGT00940000155515.a.a.g.b	ENSGT00390000008812.a.b.c.a	ENSGT00940000155248.vb.f.a.b	ENSGT00390000012731.a.b.i	ENSGT00390000009987	ENSGT00940000153514.b.m.b.g	ENSGT00950000183014.f.a	ENSGT00940000162403	ENSGT00970000193449	ENSGT00940000179271
Huchen	DUPLICATION
Huchen	MODERN SPECIES	3953														ENSHHUG00000048284	ATP7B (ENSHHUG00000048286)	hikeshi (ENSHHUG00000048460) #22	eed (ENSHHUG00000048467) #21	ENSHHUG00000048683	ENSHHUG00000048684	ENSHHUG00000048687	ENSHHUG00000048688	ENSHHUG00000048690	sft2d2b (ENSHHUG00000048691)	ENSHHUG00000048692	ENSHHUG00000048701
Huchen	MODERN SPECIES	3638												pwp2h (ENSHHUG00000048777)	ENSHHUG00000048913	ENSHHUG00000048928	ATP7B (ENSHHUG00000048938)	hikeshi (ENSHHUG00000049288) #22	eed (ENSHHUG00000049291) #21	ENSHHUG00000049330	ENSHHUG00000049343	ENSHHUG00000049344	sft2d2b (ENSHHUG00000049346)	ENSHHUG00000049354	ENSHHUG00000049357	ENSHHUG00000049361	ENSHHUG00000049365	ENSHHUG00000049536	cdk5r2a (ENSHHUG00000049538)	ENSHHUG00000049541	ENSHHUG00000049543
Salmoninae_a	ANCESTRAL SPECIES	59	ENSGT00940000155126.s.a.k.b	ENSGT00390000004553.f.b.a.a	ENSGT00940000160059.a.b.a	ENSGT00550000075037.b	ENSGT00950000183165.a.a.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00390000001718.b.b.a.a	ENSGT01000000221844	ENSGT00390000001718.b.b.a.b	ENSGT00550000074981	ENSGT01000000214434.B.a.b.a	ENSGT00990000204351.a	ENSGT01000000214434.B.a.b.b	ENSGT00990000204351.b	ENSGT00940000155749.d	ENSGT00390000004056 #22	ENSGT00510000047334 #21	ENSGT00940000153695.B.d	ENSGT00940000160000.e	ENSGT00390000002188	ENSGT00390000017916	ENSGT00940000155515.a.a.h.a.a	ENSGT00940000155515.a.a.h.a.b	ENSGT00390000008812.a.b.c.b	ENSGT00940000155248.vb.e	ENSGT00940000155248.vb.f.a.b	ENSGT00390000012731.a.b.i	ENSGT00390000009987	ENSGT00940000153514.b.m.b.g	ENSGT00950000183014.f.a	ENSGT00940000162403
Salmo	ANCESTRAL SPECIES	108	ENSGT00940000155502.w	ENSGT00390000003338.y	ENSGT00940000161508.b.o.b.a	ENSGT00940000161508.b.o.a.e	ENSGT00940000155126.s.a.k.b.b	ENSGT00390000004553.f.a.a	ENSGT00940000160059.a.b.a.d	ENSGT00550000075037.b.b	ENSGT00950000183165.a.a.b.e	ENSGT00950000183038.a.b.b.b.r.f	ENSGT00390000001718.b.b.a.b	ENSGT00550000074981	ENSGT01000000214434.B.a.b.a	ENSGT00990000204351.a	ENSGT00940000155749.d.eb	ENSGT00390000004056 #22	ENSGT00510000047334 #21	ENSGT00940000153695.B.c.a	ENSGT00390000018525.a.b.e.a.h	ENSGT00940000160000.e	ENSGT00390000002188
River trout	DUPLICATION
River trout	MODERN SPECIES	32	kpnb3 (ENSSTUG00000047830)	nudt15 (ENSSTUG00000047788)	cpo (ENSSTUG00000047773)	cpo (ENSSTUG00000047754)	fn1b (ENSSTUG00000047017)	atic (ENSSTUG00000046839)	mnx2b (ENSSTUG00000046816)	stk16 (ENSSTUG00000046809)	tuba8l2 (ENSSTUG00000046796)	NR4A2 (ENSSTUG00000046787)	gpd2 (ENSSTUG00000046498)	pwp2h (ENSSTUG00000046190)	ENSSTUG00000045611	ENSSTUG00000045582	ATP7B (ENSSTUG00000040444)	hikeshi (ENSSTUG00000040334) #22	eed (ENSSTUG00000040198) #21	ENSSTUG00000040166	ENSSTUG00000040149	ENSSTUG00000040145	sft2d2b (ENSSTUG00000040141)	ENSSTUG00000040133	ENSSTUG00000040125	ENSSTUG00000040103	ENSSTUG00000040098	ENSSTUG00000040095	ENSSTUG00000040050	ENSSTUG00000040037	arl6ip6 (ENSSTUG00000040033)	eef1b2 (ENSSTUG00000039946)	ndufs1 (ENSSTUG00000039871)
River trout	MODERN SPECIES	36	kpnb3 (ENSSTUG00000011045)	nudt15 (ENSSTUG00000011453)	cpo (ENSSTUG00000011487)	cpo (ENSSTUG00000011526)	fn1b (ENSSTUG00000011785)	atic (ENSSTUG00000018666)	mnx2b (ENSSTUG00000018928)	stk16 (ENSSTUG00000018934)	tuba8l2 (ENSSTUG00000018945)	nr4a2b (ENSSTUG00000018948)	gpd2 (ENSSTUG00000019084)	ENSSTUG00000020363	ENSSTUG00000017764	ENSSTUG00000018432	ATP7B (ENSSTUG00000018499)	hikeshi (ENSSTUG00000021976) #22	eed (ENSSTUG00000021992) #21	ENSSTUG00000022172	ENSSTUG00000022200	ENSSTUG00000022212	sft2d2b (ENSSTUG00000022216)	ENSSTUG00000022239	ENSSTUG00000022260	ENSSTUG00000022271	ENSSTUG00000022288	arl6ip6 (ENSSTUG00000022298)	ndufs1 (ENSSTUG00000022318)	eef1b2 (ENSSTUG00000022511)	dytn (ENSSTUG00000022550)	zswim2 (ENSSTUG00000022558)	ENSSTUG00000022579
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000008813	ENSSSAG00000007260	cpo (ENSSSAG00000007265)	fn1b (ENSSSAG00000105424)	atic (ENSSSAG00000054060)	ENSSSAG00000082902	stk16 (ENSSSAG00000042133)	tuba8l2 (ENSSSAG00000042151)	ENSSSAG00000015387	ENSSSAG00000042287	ENSSSAG00000116115	ENSSSAG00000045894	glpk3 (ENSSSAG00000045972)	ENSSSAG00000093775	ENSSSAG00000046633	ENSSSAG00000040247 #22	ENSSSAG00000046298 #21	ENSSSAG00000046310	ENSSSAG00000046459	ENSSSAG00000033202	sft2d2b (ENSSSAG00000093441)	ENSSSAG00000109602	ENSSSAG00000054519	ENSSSAG00000101961	ENSSSAG00000092634	ENSSSAG00000118756	ENSSSAG00000017658	ENSSSAG00000113561	ENSSSAG00000041229	arl6ip6 (ENSSSAG00000041213)	ndufs1 (ENSSSAG00000042889)
Atlantic salmon	MODERN SPECIES	8	ENSSSAG00000006274	ENSSSAG00000114244	ENSSSAG00000006910	ENSSSAG00000103060	ENSSSAG00000108422	ENSSSAG00000082766	ENSSSAG00000009429	ENSSSAG00000107415	stk16 (ENSSSAG00000079250)	tuba8l2 (ENSSSAG00000015785)	ENSSSAG00000042186	ENSSSAG00000008545	ENSSSAG00000013302	ENSSSAG00000012823	ENSSSAG00000007072	ENSSSAG00000006987 #22	ENSSSAG00000114830 #21	ENSSSAG00000099614	ENSSSAG00000121919	ENSSSAG00000106943	ENSSSAG00000082954	ENSSSAG00000006972	ENSSSAG00000044440	ENSSSAG00000089218	ENSSSAG00000098018	ENSSSAG00000109371	ENSSSAG00000099867	ENSSSAG00000041206	ENSSSAG00000042864	ENSSSAG00000042848	zswim2 (ENSSSAG00000090849)
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	66	ENSGT00940000161508.b.o.b.a	ENSGT00940000161508.b.o.a	ENSGT00940000155126.s.a.k.b	ENSGT00390000004553.f.b.a.a	ENSGT00940000160059.a.b.a	ENSGT00550000075037.b	ENSGT00950000183165.a.a.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00390000001718.b.b.a.a	ENSGT00390000001718.b.b.b	ENSGT01000000221844	ENSGT00550000074981.c	ENSGT01000000214434.B.a.b.a	ENSGT00990000204351.b	ENSGT00940000155749.d	ENSGT00390000004056.pb #22	ENSGT00510000047334.w #21	ENSGT00390000004056.qb #22	ENSGT00510000047334.x #21	ENSGT00940000153695.B.d	ENSGT00940000156207.b.c.a.b.b.b	ENSGT00940000156207.b.c.b.a.a.b	ENSGT00940000156207.b.c.b.a.a.a	ENSGT00390000018525.a.b.e.a	ENSGT00940000160000.f	ENSGT00390000002188	ENSGT00390000017916	ENSGT00940000155515.a.a.h.a.a	ENSGT00940000155515.a.a.h.a.b	ENSGT00390000008812.a.b.c.b	ENSGT00940000155248.vb.e
Oncorhynchus_a	ANCESTRAL SPECIES	147			ENSGT00940000155126.s.a.k.b	ENSGT00390000004553.f.b.a.a	ENSGT00940000164719	ENSGT00390000004553.f.b.a.b	ENSGT00940000160059.a.b.a	ENSGT00550000075037.b	ENSGT00950000183165.a.a.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00390000001718.b.b.a.b	ENSGT00550000074981.c	ENSGT01000000214434.B.a.b.a	ENSGT00990000204351.a	ENSGT00940000155749.d	ENSGT00390000004056.pb #22	ENSGT00510000047334.w #21	ENSGT00940000153695.B.d	ENSGT00940000156207.b.c.a.b.b.b	ENSGT00940000156207.b.c.b.a.a.b	ENSGT00390000018525.a.b.e.a	ENSGT00940000160000.f	ENSGT00390000002188	ENSGT00390000017916	ENSGT00940000155515.a.a.h.a.a
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2992	ENSOTSG00005045783	ENSOTSG00005045784	ENSOTSG00005045785	ENSOTSG00005045786	sft2d2b (ENSOTSG00005045787)	ENSOTSG00005045788	ENSOTSG00005045789	ENSOTSG00005045790	eed (ENSOTSG00005045791) #21	hikeshi (ENSOTSG00005045792) #22	ENSOTSG00005045793	ENSOTSG00005045794	ENSOTSG00005045795	ENSOTSG00005045796	pwp2h (ENSOTSG00005045800)	hikeshi (ENSOTSG00005045801) #22	eed (ENSOTSG00005045802) #21	ENSOTSG00005045804	ENSOTSG00005045805	sft2d2b (ENSOTSG00005045806)	ENSOTSG00005045807	ENSOTSG00005045808	ENSOTSG00005045809	ENSOTSG00005045810	ENSOTSG00005045813	ENSOTSG00005039535	ENSOTSG00005039537	sat1b (ENSOTSG00005039542)	ACOT9 (ENSOTSG00005039546)	APOO (ENSOTSG00005040459)	klhl15 (ENSOTSG00005040460)
Chinook salmon	MODERN SPECIES	2992	ENSOTSG00005045813	ENSOTSG00005045810	ENSOTSG00005045809	ENSOTSG00005045808	ENSOTSG00005045807	sft2d2b (ENSOTSG00005045806)	ENSOTSG00005045805	ENSOTSG00005045804	eed (ENSOTSG00005045802) #21	hikeshi (ENSOTSG00005045801) #22	pwp2h (ENSOTSG00005045800)	ENSOTSG00005045796	ENSOTSG00005045795	ENSOTSG00005045794	ENSOTSG00005045793	hikeshi (ENSOTSG00005045792) #22	eed (ENSOTSG00005045791) #21	ENSOTSG00005045790	ENSOTSG00005045789	ENSOTSG00005045788	sft2d2b (ENSOTSG00005045787)	ENSOTSG00005045786	ENSOTSG00005045785	ENSOTSG00005045784	ENSOTSG00005045783
Coho salmon	MODERN SPECIES	34	atg3 (ENSOKIG00005050186)	ENSOKIG00005050176	faimb (ENSOKIG00005050166)	ENSOKIG00005050160	fn1b (ENSOKIG00005049616)	atic (ENSOKIG00005049252)	ENSOKIG00005049214	stk16 (ENSOKIG00005049212)	tuba8l2 (ENSOKIG00005049209)	NR4A2 (ENSOKIG00005049206)	ENSOKIG00005048778	pwp2h (ENSOKIG00005048674)	GK3 (ENSOKIG00005048415)	ENSOKIG00005048379	ATP7B (ENSOKIG00005046428)	hikeshi (ENSOKIG00005046200) #22	eed (ENSOKIG00005046074) #21	ENSOKIG00005046051	ENSOKIG00005046040	ENSOKIG00005046033	sft2d2b (ENSOKIG00005046022)	ENSOKIG00005046015	ENSOKIG00005046007	ENSOKIG00005046001	ENSOKIG00005042513	cdk5r2a (ENSOKIG00005042176)
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	28	cpo (ENSOMYG00000004128)	fn1b (ENSOMYG00000006459)	ENSOMYG00000074661	ENSOMYG00000060190	atic (ENSOMYG00000008659)	ENSOMYG00000009675	stk16 (ENSOMYG00000009701)	tuba8l2 (ENSOMYG00000009711)	ENSOMYG00000060607	ENSOMYG00000056151	ENSOMYG00000069237	ENSOMYG00000007956	ENSOMYG00000055697	ENSOMYG00000008902	ENSOMYG00000008730	ck073 (ENSOMYG00000009818) #22	ENSOMYG00000010041 #21	ENSOMYG00000010168	ENSOMYG00000010228	ENSOMYG00000055017	sft2d2b (ENSOMYG00000056798)	ENSOMYG00000049924	ENSOMYG00000010393	ENSOMYG00000010486	ENSOMYG00000010528	ENSOMYG00000059170	ENSOMYG00000062129	ENSOMYG00000052582	ENSOMYG00000055796	ENSOMYG00000004263	ENSOMYG00000049709
Rainbow trout	MODERN SPECIES	9	ENSOMYG00000062246	ENSOMYG00000074365	ENSOMYG00000067824	cpo (ENSOMYG00000004299)	fn1b (ENSOMYG00000067929)	atic (ENSOMYG00000059980)	ENSOMYG00000055057	ENSOMYG00000007531	tuba8l2 (ENSOMYG00000007598)	ENSOMYG00000007694	ENSOMYG00000007725	ENSOMYG00000008885	ENSOMYG00000008375	ENSOMYG00000008599	ENSOMYG00000009899	ck073 (ENSOMYG00000061426) #22	ENSOMYG00000076427 #21	ENSOMYG00000013419	ENSOMYG00000013438	ENSOMYG00000013450	sft2d2b (ENSOMYG00000065190)	ENSOMYG00000056166	ENSOMYG00000067658	ENSOMYG00000057369	ENSOMYG00000010509	ENSOMYG00000010566	ENSOMYG00000076187	ENSOMYG00000066169	ENSOMYG00000004303	arl6ip6 (ENSOMYG00000057345)	ndufs1 (ENSOMYG00000004516)
Oncorhynchus	ANCESTRAL SPECIES	66	ENSGT00940000155126.s.a.k.b	ENSGT00390000004553.f.b.a.a	ENSGT00940000160059.a.b.a	ENSGT00550000075037.b	ENSGT00950000183165.a.a.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00390000001718.b.b.a.a	ENSGT00390000001718.b.b.b	ENSGT01000000221844	ENSGT00550000074981.c	ENSGT01000000214434.B.a.b.a	ENSGT00990000204351.b	ENSGT00940000155749.d	ENSGT00390000004056.pb #22	ENSGT00510000047334.w #21	ENSGT00390000004056.qb #22	ENSGT00510000047334.x #21	ENSGT00940000153695.B.d	ENSGT00940000156207.b.c.a.b.b.b	ENSGT00940000156207.b.c.b.a.a.b	ENSGT00940000156207.b.c.b.a.a.a	ENSGT00390000018525.a.b.e.a	ENSGT00940000160000.f	ENSGT00390000002188	ENSGT00390000017916	ENSGT00940000155515.a.a.h.a.a	ENSGT00940000155515.a.a.h.a.b	ENSGT00390000008812.a.b.c.b	ENSGT00940000155248.vb.e	ENSGT01060000253578	ENSGT00940000155248.vb.f.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	706																ENSGT00390000004056.qb #22	ENSGT00510000047334.x #21
Chinook salmon	MODERN SPECIES	1908																ENSOTSG00005018858 #22	ENSOTSG00005018859 #21
Northern pike	MODERN SPECIES	21	cpo (ENSELUG00000000051)	cpo (ENSELUG00000001515)	cpo (ENSELUG00000000052)	fn1b (ENSELUG00000001859)	atic (ENSELUG00000001864)	mnx2b (ENSELUG00000001866)	stk16 (ENSELUG00000001868)	tuba8l2 (ENSELUG00000001871)	NR4A2 (ENSELUG00000001873)	gpd2 (ENSELUG00000001876)	ENSELUG00000034064	pwp2h (ENSELUG00000001878)	ENSELUG00000001883	ENSELUG00000001886	ATP7B (ENSELUG00000001889)	hikeshi (ENSELUG00000001892) #22	eed (ENSELUG00000001896) #21	ENSELUG00000001900	ENSELUG00000001909	ENSELUG00000001903	sft2d2b (ENSELUG00000001914)	ENSELUG00000001301	iqcb1 (ENSELUG00000001921)	ENSELUG00000001926	ENSELUG00000001957	cdk5r2a (ENSELUG00000001981)	ENSELUG00000001996	ENSELUG00000002002	ENSELUG00000002006	ENSELUG00000002008	ndufs1 (ENSELUG00000002014)
Otomorpha	ANCESTRAL SPECIES	104											ENSGT00940000164201.c.b.a	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00940000153695.B	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00390000000155.a.a #28	ENSGT00390000018895.a	ENSGT00950000183058.A.b.b	ENSGT00950000183058.A.a.d	ENSGT00940000160248.b	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00940000154474.A	ENSGT00940000154474.B.a
Otophysi	ANCESTRAL SPECIES	60										ENSGT00940000164201.c.b.b.b	ENSGT00940000164201.c.b.a	ENSGT00950000183105.A	ENSGT00910000144283.r	ENSGT00940000153695.B	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00390000000155.a.a #28	ENSGT00390000018895.a	ENSGT00950000183058.A.b.b	ENSGT00950000183058.A.a.d	ENSGT00940000160248.b	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00940000154474.A	ENSGT00940000154474.B.a
Cyprinoidei	ANCESTRAL SPECIES	34												ENSGT00950000183105.A	ENSGT00910000144283.r	ENSGT00940000153695.B	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00390000000155.a.a #28	ENSGT00390000018895.a	ENSGT00950000183058.A.b.b	ENSGT00950000183058.A.a.d	ENSGT00940000160248.b	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831.l.b	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00940000154474.A	ENSGT00940000154474.B.a
Cyprininae	ANCESTRAL SPECIES	279														ENSGT00940000153695.B.b	ENSGT00510000047334.o #21	ENSGT00390000004056 #22	ENSGT00390000000155.a.a.a #28	ENSGT00390000018895.a.e	ENSGT00950000183058.A.b.b.j	ENSGT00950000183058.A.a.d.a	ENSGT00940000160248.b	ENSGT00940000154851.A.c.a	ENSGT00940000159723	ENSGT00940000157831.l.b	ENSGT00390000018208	ENSGT00390000005914.a.i	ENSGT00940000153118.f	ENSGT00940000158209	ENSGT00940000154474.A.i	ENSGT00940000154474.B.a.i	ENSGT00940000157694.c
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	18	grk1a (ENSCARG00000014773)	tfdp1b (ENSCARG00000014786)	ENSCARG00000014792	ENSCARG00000014797	f10 (ENSCARG00000014838)	f7 (ENSCARG00000014870)	f7l (ENSCARG00000014881)	ENSCARG00000014896	ENSCARG00000014903	ENSCARG00000014906	ENSCARG00000014930	dusp27 (ENSCARG00000014946)	rpl24 (ENSCARG00000014961)	cep97 (ENSCARG00000014981)	eed (ENSCARG00000015002) #21	hikeshi (ENSCARG00000015061) #22	PRSS23 (ENSCARG00000015089) #28	tmem39a (ENSCARG00000015108)	ildr1a (ENSCARG00000015164)	ENSCARG00000015178	ENSCARG00000015190	ENSCARG00000015217	ENSCARG00000015235	ildr1a (ENSCARG00000015244)	ILDR2 (ENSCARG00000015253)	ENSCARG00000015264	ENSCARG00000015278	dusp27 (ENSCARG00000015286)
Goldfish	MODERN SPECIES	18	mettl21e (ENSCARG00000014035)	trmt10c (ENSCARG00000014028)	mrpl16 (ENSCARG00000014021)	ENSCARG00000014017	ENSCARG00000014007	jam2a (ENSCARG00000013978)	atp5pf (ENSCARG00000013964)	APP (ENSCARG00000005185)	cyyr1 (ENSCARG00000004821)	ADAMTS1 (ENSCARG00000004657)	ADAMTS5 (ENSCARG00000004544)	NCAM2 (ENSCARG00000004349)	rpl24 (ENSCARG00000004310)	cep97 (ENSCARG00000004292)	eed (ENSCARG00000004215) #21	hikeshi (ENSCARG00000004190) #22	FAM184A (ENSCARG00000004101)	mcm9 (ENSCARG00000004082)	PLN (ENSCARG00000004074)	CEP85L (ENSCARG00000004048)	si:dkeyp-114g9.1 (ENSCARG00000004018)	SLC35F1 (ENSCARG00000070178)	nus1 (ENSCARG00000070177)	ENSCARG00000070176	gopc (ENSCARG00000070175)	dcbld1 (ENSCARG00000070174)	vgll2a (ENSCARG00000070173)	rfx6 (ENSCARG00000070161)	tdrd15 (ENSCARG00000070155)	ube2f (ENSCARG00000070154)	si:ch211-93g23.2 (ENSCARG00000070152)
Cyprininae_a	ANCESTRAL SPECIES	277														ENSGT00940000153695.B.b	ENSGT00510000047334.o #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00390000000155.a.a.a #28	ENSGT00390000018895.a.e	ENSGT00950000183058.A.b.b.j	ENSGT00950000183058.A.a.d.a	ENSGT00940000160248.b	ENSGT00940000154851.A.c.a	ENSGT00940000159723	ENSGT00940000157831.l.b	ENSGT00390000018208	ENSGT00390000005914.a.i	ENSGT00940000153118.f	ENSGT00940000158209	ENSGT00940000154474.A.i	ENSGT00940000154474.B.a.i
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	4816																hikeshi (ENSSGRG00000005021) #22
Golden-line barbel	MODERN SPECIES	4828																hikeshi (ENSSGRG00000005068) #22
Common carp reference	MODERN SPECIES	27												cep97 (ENSCCRG00000032957)	rpl24 (ENSCCRG00000032964)	ENSCCRG00000064482	eed (ENSCCRG00000001122) #21	hikeshi (ENSCCRG00000001128) #22	ENSCCRG00000060980 #28	tmem39a (ENSCCRG00000047906)	ILDR2 (ENSCCRG00000082215)	ENSCCRG00000070152	ENSCCRG00000079561	ENSCCRG00000063707	STYXL2 (ENSCCRG00000018027)	ENSCCRG00000060903	CD247 (ENSCCRG00000058388)	creg1 (ENSCCRG00000017997)	ENSCCRG00000065089	ENSCCRG00000018008	f7l (ENSCCRG00000077146)	ENSCCRG00000069274	f10 (ENSCCRG00000059290)
Zebrafish	MODERN SPECIES												rpl24 (ENSDARG00000099104)	cep97 (ENSDARG00000102407)	NFKBIZ (ENSDARG00000102097)	ENSDARG00000099319	eed (ENSDARG00000099640) #21	hikeshi (ENSDARG00000104071) #22	tmem39a (ENSDARG00000102746)	ildr1a (ENSDARG00000103929)	ENSDARG00000101073	gpa33a (ENSDARG00000100223)	f7l (ENSDARG00000100782)	f7 (ENSDARG00000034862)	f7i (ENSDARG00000075827)	f10 (ENSDARG00000088581)	prozb (ENSDARG00000076900)	pcid2 (ENSDARG00000013802)	cul4a (ENSDARG00000096578)	ENSDARG00000109848	LAMP1 (ENSDARG00000100181)	grtp1a (ENSDARG00000029936)	adprhl1 (ENSDARG00000041589)
Characiphysae	ANCESTRAL SPECIES	64	ENSGT00390000006290	ENSGT00940000175812	ENSGT00940000168744	ENSGT01030000234915.b.a.a	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916.ab	ENSGT00940000164201.c.b.b.b	ENSGT00940000164201.c.b.a.c	ENSGT00950000183105.A	ENSGT00910000144283.q.a	ENSGT00940000153695.B	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00390000000155.a.a #28	ENSGT00390000018895.a	ENSGT00950000183058.A.b.b	ENSGT00950000183058.A.a.d	ENSGT00940000160248.b	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00940000154474.A	ENSGT00940000154474.B.a
Characiphysae_b	ANCESTRAL SPECIES	45	ENSGT00390000006290	ENSGT00940000175812	ENSGT00940000168744	ENSGT01030000234915.b.a.a	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916.ab	ENSGT00940000164201.c.b.b.b	ENSGT00940000164201.c.b.a.c	ENSGT00950000183105.A	ENSGT00910000144283.q.a	ENSGT00940000153695.B	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00390000000155.a.a #28	ENSGT00390000018895.a	ENSGT00950000183058.A.b.b	ENSGT00950000183058.A.a.d	ENSGT00940000160248.b	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00940000154474.A	ENSGT00940000154474.B.a
Characoidei	ANCESTRAL SPECIES	42	ENSGT00390000006290	ENSGT00940000163871.a.d.c	ENSGT00940000156984.a.a	ENSGT01030000234513.B.b.d	ENSGT01050000244864.B.b.a.a	ENSGT00940000157358	ENSGT00940000154633.id.b	ENSGT00940000156916.ab	ENSGT00940000164201.c.b.b.a	ENSGT00940000164201.c.b.b.b	ENSGT00940000164201.c.b.a.c.c	ENSGT00950000183105.A	ENSGT00910000144283.q.a	ENSGT00940000153695.B	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000011985 #23	ENSGT00390000000155.a.a #28	ENSGT00390000018895.a	ENSGT00950000183058.A.b.b	ENSGT00950000183058.A.a.d	ENSGT00940000160248.b	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00940000154474.A	ENSGT00940000154474.B.a
Red-bellied piranha	MODERN SPECIES	78											ENSPNAG00000001998	rpl24 (ENSPNAG00000011883)	ENSPNAG00000011855	NFKBIZ (ENSPNAG00000011841)	eed (ENSPNAG00000001959) #21	hikeshi (ENSPNAG00000011803) #22	CCDC81 (ENSPNAG00000011655) #23	PRSS23 (ENSPNAG00000011642) #28	tmem39a (ENSPNAG00000001839)	ildr1a (ENSPNAG00000005869)	ILDR2 (ENSPNAG00000011585)	ENSPNAG00000011569	ENSPNAG00000001789	dusp27 (ENSPNAG00000001783)	ENSPNAG00000011512	CD247 (ENSPNAG00000011477)	creg1 (ENSPNAG00000001749)	ENSPNAG00000011463	ENSPNAG00000011459	f7l (ENSPNAG00000011388)	f7 (ENSPNAG00000011383)
Mexicana tetra	MODERN SPECIES	3	pspc1 (ENSAMXG00000036881)	ENSAMXG00000024832	ENSAMXG00000030337	ENSAMXG00000038532	ENSAMXG00000015779	ENSAMXG00000030475	ENSAMXG00000040238	ENSAMXG00000043681	ENSAMXG00000015797	ENSAMXG00000031827	rpl24 (ENSAMXG00000015842)	ENSAMXG00000043000	cep97 (ENSAMXG00000015863)	NFKBIZ (ENSAMXG00000015888)	eed (ENSAMXG00000015898) #21	hikeshi (ENSAMXG00000034127) #22	CCDC81 (ENSAMXG00000015928) #23	PRSS23 (ENSAMXG00000024833) #28	tmem39a (ENSAMXG00000015939)	ENSAMXG00000043219	ildr1a (ENSAMXG00000039418)	ILDR2 (ENSAMXG00000038621)	ENSAMXG00000030850	ENSAMXG00000016020	dusp27 (ENSAMXG00000033251)	ENSAMXG00000037806	CD247 (ENSAMXG00000030068)	creg1 (ENSAMXG00000039279)	ENSAMXG00000039576	ENSAMXG00000016092	f7l (ENSAMXG00000033258)
Electric eel	MODERN SPECIES	8	ENSEEEG00000011809	ENSEEEG00000011810	fgf14 (ENSEEEG00000011811)	GJB6 (ENSEEEG00000011812)	ENSEEEG00000011814	GJA3 (ENSEEEG00000011817)	pspc1 (ENSEEEG00000011818)	ENSEEEG00000011875	ENSEEEG00000011876	ENSEEEG00000011878	ENSEEEG00000011879	rpl24 (ENSEEEG00000011882)	cep97 (ENSEEEG00000011885)	NFKBIZ (ENSEEEG00000011887)	eed (ENSEEEG00000011894) #21	hikeshi (ENSEEEG00000011906) #22	PRSS23 (ENSEEEG00000011921) #28	tmem39a (ENSEEEG00000011922)	ildr1a (ENSEEEG00000011924)	ILDR2 (ENSEEEG00000011925)	GPA33 (ENSEEEG00000011929)	ENSEEEG00000011935	dusp27 (ENSEEEG00000011939)	ENSEEEG00000011940	CD247 (ENSEEEG00000011941)	creg1 (ENSEEEG00000011942)	ENSEEEG00000011943	ENSEEEG00000011944	f7i (ENSEEEG00000011945)	f10 (ENSEEEG00000012023)	ENSEEEG00000012085
Channel catfish	MODERN SPECIES	18	Fgf14 (ENSIPUG00000013131)	pspc1 (ENSIPUG00000013192)	ENSIPUG00000013264	FDX1 (ENSIPUG00000013307)	ENSIPUG00000013331	ENSIPUG00000013364	ENSIPUG00000013391	ENSIPUG00000013435	ENSIPUG00000013531	ENSIPUG00000013540	rpl24 (ENSIPUG00000013552)	ENSIPUG00000013601	ENSIPUG00000013606	nfkbiz (ENSIPUG00000013611)	eed (ENSIPUG00000013630) #21	hikeshi (ENSIPUG00000013670) #22	ENSIPUG00000013703	ENSIPUG00000013716	cckbra (ENSIPUG00000013725)	NALF1 (ENSIPUG00000013739)	lig4 (ENSIPUG00000013748)	irs2a (ENSIPUG00000013753)	RAB20 (ENSIPUG00000013758)	cars2 (ENSIPUG00000013774)	Ube2a (ENSIPUG00000013875)	ing1 (ENSIPUG00000013868)	ankrd10 (ENSIPUG00000013887)	hsf2bp (ENSIPUG00000013890)	ENSIPUG00000013895	cryaa (ENSIPUG00000013900)	CBS (ENSIPUG00000013909)
Clupeiformes	ANCESTRAL SPECIES	126											ENSGT00940000164201.c.b.a	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00940000153695.B	ENSGT00510000047334 #21	ENSGT00390000004056 #22	ENSGT00390000000155.a.a #28	ENSGT00390000018895.a	ENSGT00950000183058.A.b.b	ENSGT00950000183058.A.a.d	ENSGT00940000160248.b	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00940000179735	ENSGT01020000232945	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00940000154474.A
Atlantic herring	MODERN SPECIES	13														tmem39a (ENSCHAG00000023500)	ildr1a (ENSCHAG00000023509)	hikeshi (ENSCHAG00000023518) #22	eed (ENSCHAG00000023540) #21	lig4 (ENSCHAG00000023608)	rpl24 (ENSCHAG00000023610)	ENSCHAG00000023624	ENSCHAG00000023627	ENSCHAG00000023641	ENSCHAG00000023647	ENSCHAG00000023651	ENSCHAG00000023661	ENSCHAG00000002650	ENSCHAG00000002497	dusp27 (ENSCHAG00000002811)	CD247 (ENSCHAG00000002834)	creg1 (ENSCHAG00000002868)	ENSCHAG00000002942
Denticle herring	MODERN SPECIES	6	ENSDCDG00000024622	ENSDCDG00000024620	CARS2 (ENSDCDG00000024503)	irs2a (ENSDCDG00000024480)	lig4 (ENSDCDG00000024475)	NALF1 (ENSDCDG00000024471)	ENSDCDG00000024467	ENSDCDG00000021371	ENSDCDG00000035273	ENSDCDG00000035271	mxg (ENSDCDG00000035242)	rpl24 (ENSDCDG00000035229)	cep97 (ENSDCDG00000035228)	NFKBIZ (ENSDCDG00000035223)	eed (ENSDCDG00000035214) #21	hikeshi (ENSDCDG00000035211) #22	PRSS23 (ENSDCDG00000035208) #28	tmem39a (ENSDCDG00000035207)	ildr1a (ENSDCDG00000035206)	ILDR2 (ENSDCDG00000035204)	ENSDCDG00000035202	ENSDCDG00000035199	dusp27 (ENSDCDG00000035196)	ENSDCDG00000035194	ENSDCDG00000035193	creg1 (ENSDCDG00000035191)	ENSDCDG00000035190	ENSDCDG00000035187	f7l (ENSDCDG00000035158)	f7 (ENSDCDG00000035136)	f7i (ENSDCDG00000035125)
Spotted gar	MODERN SPECIES	655	ADGRG7 (ENSLOCG00000009466)	tfg (ENSLOCG00000009472)	abi3bpb (ENSLOCG00000009480)	IMPG2 (ENSLOCG00000009490)	senp7b (ENSLOCG00000009501)	si:ch73-41e3.7 (ENSLOCG00000009518)	txnl4b (ENSLOCG00000009526)	trmt10c (ENSLOCG00000017802)	pcnp (ENSLOCG00000009530)	ENSLOCG00000009538	rpl24 (ENSLOCG00000009548)	cep97 (ENSLOCG00000009560)	nxpe3 (ENSLOCG00000009568)	NFKBIZ (ENSLOCG00000009576)	eed (ENSLOCG00000009588) #21	hikeshi (ENSLOCG00000009599) #22	CCDC81 (ENSLOCG00000009607) #23	me3 (ENSLOCG00000009615) #25	PRSS23 (ENSLOCG00000017803) #28	tmem39a (ENSLOCG00000009633)	ildr1a (ENSLOCG00000009645)	ildr2 (ENSLOCG00000009660)	GPA33 (ENSLOCG00000009679)	ENSLOCG00000009686	dusp27 (ENSLOCG00000009695)	pou2f1b (ENSLOCG00000009711)	CD247 (ENSLOCG00000009728)	creg1 (ENSLOCG00000009735)	ENSLOCG00000017804	ENSLOCG00000009739	ENSLOCG00000009754
Reedfish	MODERN SPECIES	12	atg101 (ENSECRG00000002851)	ZBTB21 (ENSECRG00000002844)	ENSECRG00000002834	ENSECRG00000002828	MAP6 (ENSECRG00000002822)	mogat2 (ENSECRG00000002814)	dgat2 (ENSECRG00000002807)	uvrag (ENSECRG00000002795)	ENSECRG00000002787	wnt11 (ENSECRG00000002768)	ENSECRG00000002752	DOCK9 (ENSECRG00000002654)	nxpe3 (ENSECRG00000002616)	NFKBIZ (ENSECRG00000002600)	eed (ENSECRG00000002586) #21	hikeshi (ENSECRG00000002579) #22	CCDC81 (ENSECRG00000002568) #23	me3 (ENSECRG00000002542) #25	PRSS23 (ENSECRG00000002500) #28	tmem39a (ENSECRG00000002466)	ildr1a (ENSECRG00000002446)	ILDR2 (ENSECRG00000002435)	ENSECRG00000002425	GPA33 (ENSECRG00000002415)	ENSECRG00000002377	dusp27 (ENSECRG00000002295)	pou2f1b (ENSECRG00000002245)	CD247 (ENSECRG00000002223)	creg1 (ENSECRG00000002206)	ENSECRG00000002191	f7l (ENSECRG00000002167)
Elephant shark	MODERN SPECIES	1489	tenm4 (ENSCMIG00000015412)	ENSCMIG00000015338	prcp (ENSCMIG00000015317)	ENSCMIG00000015306	rab30 (ENSCMIG00000015297)	PCF11 (ENSCMIG00000015293) #7	ANKRD42 (ENSCMIG00000015276) #8	ccdc90b (ENSCMIG00000015262) #11	dlg2 (ENSCMIG00000014774) #13	tmem126a (ENSCMIG00000014504) #15	ENSCMIG00000014503	ENSCMIG00000014494 #18	ENSCMIG00000014486 #19	picalma (ENSCMIG00000014421) #20	eed (ENSCMIG00000014389) #21	hikeshi (ENSCMIG00000014377) #22	CCDC81 (ENSCMIG00000014361) #23	me3 (ENSCMIG00000014053) #25	fzd4 (ENSCMIG00000013939) #29	tmem135 (ENSCMIG00000013928) #30	RAB38 (ENSCMIG00000013904) #31	ctsc (ENSCMIG00000013900) #32	grm5b (ENSCMIG00000013895) #33	tyr (ENSCMIG00000013755) #35	NOX4 (ENSCMIG00000013715) #36	ENSCMIG00000013676	naalad2 (ENSCMIG00000013613)	chordc1a (ENSCMIG00000013595)	ENSCMIG00000013592	ENSCMIG00000013585	fat3a (ENSCMIG00000013527)
Cyclostomata	ANCESTRAL SPECIES	6													ENSGT00390000010101	ENSGT00940000153511.c	ENSGT00950000182856.a.b	ENSGT00390000004056 #22	ENSGT00530000063946.a	ENSGT00940000157012.m	ENSGT00950000183142.a.b.a.a
Lamprey	MODERN SPECIES	3523														syncripl (ENSPMAG00000006143)	snx14 (ENSPMAG00000006176)	hikeshi (ENSPMAG00000006183) #22	ENSPMAG00000006192	ENSPMAG00000006236	ENSPMAG00000006302	ENSPMAG00000006303	ENSPMAG00000006330
Hagfish	MODERN SPECIES	58								ENSEBUG00000005125	ENSEBUG00000011115	ENSEBUG00000014021	ENSEBUG00000015537	ENSEBUG00000010048	ENSEBUG00000012480	slc35a1 (ENSEBUG00000014118)	ENSEBUG00000002530	hikeshi (ENSEBUG00000010170) #22	ENSEBUG00000006377	ENSEBUG00000003891	ENSEBUG00000006744	ENSEBUG00000004135	ENSEBUG00000004862	ENSEBUG00000014522	DPH1 (ENSEBUG00000014384)	ENSEBUG00000009695	ENSEBUG00000005658	ENSEBUG00000006360	ENSEBUG00000003261	ENSEBUG00000014549	ENSEBUG00000005287	ENSEBUG00000004641
Ciona	ANCESTRAL SPECIES																	ENSGT00390000004056 #22
Ciona intestinalis	MODERN SPECIES	3	ENSCING00000008425	ENSCING00000018881	ENSCING00000000320	ENSCING00000014047	ENSCING00000014051	ENSCING00000000560	ENSCING00000021109	ENSCING00000004738	ENSCING00000024371	ENSCING00000019442	ENSCING00000019830	ENSCING00000022962	ENSCING00000014055	ENSCING00000014054	ENSCING00000023920	ENSCING00000004728 #22	ENSCING00000004732	ENSCING00000022488	ENSCING00000023513	ENSCING00000019592	ENSCING00000004724	ENSCING00000014057	ENSCING00000018051	ENSCING00000021310	net1a (ENSCING00000004654)	ENSCING00000023964	ENSCING00000025150	ENSCING00000004657	ENSCING00000014058	ENSCING00000004649	ENSCING00000024801
Ciona savignyi	MODERN SPECIES	326													ENSCSAVG00000005948	ENSCSAVG00000005943	ENSCSAVG00000005935	ENSCSAVG00000005930 #22	ENSCSAVG00000005924	ENSCSAVG00000005843	ENSCSAVG00000005800	ENSCSAVG00000005792	ENSCSAVG00000005789	ENSCSAVG00000005781	ENSCSAVG00000005778	ENSCSAVG00000005772	ENSCSAVG00000005769	ENSCSAVG00000005580	ENSCSAVG00000005575	ENSCSAVG00000005480	ENSCSAVG00000005477	ENSCSAVG00000005474	ENSCSAVG00000005415
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00390000004056 #22
Fruitfly	MODERN SPECIES	18	Srrm234 (FBgn0035253)	CG7970 (FBgn0035252)	Vta1 (FBgn0035251)	CG13920 (FBgn0025712)	Bro (FBgn0013755)	CG17249 (FBgn0035249)	CG13919 (FBgn0035248)	alphaCOP (FBgn0025725)	Bgb (FBgn0013753)	Mettl2 (FBgn0035247)	nSyb (FBgn0013342)	CG13928 (FBgn0035246)	GC (FBgn0035245)	ABCB7 (FBgn0035244)	CG33230 (FBgn0053230)	CG13926 (FBgn0035243) #22	CG12105 (FBgn0035241)	CG33791 (FBgn0035240)	CG18170 (FBgn0035239)	CG12104 (FBgn0035238)	CG13917 (FBgn0035237)	Tmep (FBgn0035236)	CG12003 (FBgn0035234)	CG7879 (FBgn0035235)	Pex10 (FBgn0035233)	CG12099 (FBgn0035232)	Pcyt2 (FBgn0035231)	Pcyt1 (FBgn0041342)	CG32313 (FBgn0052313)	pns (FBgn0035229)	CG12091 (FBgn0035228)
Caenorhabditis elegans	MODERN SPECIES	3	pdhb-1 (WBGene00015413)	dyf-3 (WBGene00001119)	C04C3.14 (WBGene00219410)	C04C3.4 (WBGene00015414)	B0546.5 (WBGene00015252)	mai-2 (WBGene00015248)	B0546.4 (WBGene00015251)	B0546.3 (WBGene00015250)	otub-4 (WBGene00015249)	vha-19 (WBGene00021952)	Y55H10A.2 (WBGene00021953)	F42A6.1 (WBGene00018323)	elks-1 (WBGene00018330)	F42A6.2 (WBGene00018324)	hrpa-1 (WBGene00001999)	F42A6.6 (WBGene00018328) #22	F42A6.5 (WBGene00018327)	zip-11 (WBGene00021082)	W08E12.9 (WBGene00021090)	W08E12.2 (WBGene00021083)	W08E12.3 (WBGene00021084)	W08E12.4 (WBGene00021085)	W08E12.5 (WBGene00021086)	W08E12.6 (WBGene00021087)	W08E12.7 (WBGene00021088)	W08E12.8 (WBGene00021089)	gcy-23 (WBGene00001548)	T26C12.3 (WBGene00020833)	clec-173 (WBGene00044469)	T26C12.2 (WBGene00020832)	T26C12.1 (WBGene00020831)
Yeast	MODERN SPECIES	15	YOL046C	PSK2 (YOL045W)	PEX15 (YOL044W)	NTG2 (YOL043C)	NGL1 (YOL042W)	NOP12 (YOL041C)	RPS15 (YOL040C)	RPP2A (YOL039W)	YOL038C-A	PRE6 (YOL038W)	YOL037C	YOL036W	YOL035C	SMC5 (YOL034W)	MSE1 (YOL033W)	OPI10 (YOL032W) #22	SIL1 (YOL031C)	GAS5 (YOL030W)	YOL029C	YAP7 (YOL028C)	MDM38 (YOL027C)	MIM1 (YOL026C)	LAG2 (YOL025W)	YOL024W	IFM1 (YOL023W)	TSR4 (YOL022C)	DIS3 (YOL021C)	TAT2 (YOL020W)	YOL019W-A	YOL019W	TLG2 (YOL018C)