Bovidae	ANCESTRAL SPECIES	1	ENSGT00390000018302	ENSGT00940000158362	ENSGT00530000063474.A	ENSGT00510000047220	ENSGT00940000153167.B	ENSGT00940000158765	ENSGT00940000163965 #9	ENSGT00390000003464 #10	ENSGT00940000154277.a.b.b.n #11	ENSGT00940000156539 #15	ENSGT00390000016650 #16	ENSGT00390000006459 #17	ENSGT00420000029753.b #18	ENSGT00390000015318 #20	ENSGT00940000158629 #21	ENSGT00940000155705.b #22	ENSGT00940000156259.b #23	ENSGT00700000106049 #24	ENSGT00940000158851 #25	ENSGT00530000063632.A #26	ENSGT00530000063790.a #27	ENSGT00940000156897 #28	ENSGT00390000015908 #29	ENSGT00390000003860 #30	ENSGT00940000153665.b.a.b #31	ENSGT00500000045816	ENSGT00940000161237 #32	ENSGT00940000163316	ENSGT00940000155505.a #33	ENSGT00390000008086	ENSGT00400000024146 #34
Caprinae	ANCESTRAL SPECIES	2	ENSGT00390000018302	ENSGT00940000158362	ENSGT00530000063474.A	ENSGT00510000047220	ENSGT00940000153167.B	ENSGT00940000158765	ENSGT00940000163965 #9	ENSGT00390000003464 #10	ENSGT00940000154277.a.b.b.n #11	ENSGT00940000156539 #15	ENSGT00390000016650 #16	ENSGT00390000006459 #17	ENSGT00420000029753.b.f #18	ENSGT00390000015318 #20	ENSGT00940000158629 #21	ENSGT00940000155705.b #22	ENSGT00940000156259.b #23	ENSGT00700000106049 #24	ENSGT00940000158851 #25	ENSGT00530000063632.A #26	ENSGT00530000063790.a #27	ENSGT00940000156897 #28	ENSGT00390000015908 #29	ENSGT00390000003860 #30	ENSGT00940000153665.b.a.b #31	ENSGT00500000045816	ENSGT00940000161237 #32	ENSGT00940000163316	ENSGT00940000155505.a #33	ENSGT00390000008086	ENSGT00400000024146 #34
Goat	MODERN SPECIES	22	ENSCHIG00000006507 #7	ENSCHIG00000009639 #8	ENSCHIG00000023686 #9	MMACHC (ENSCHIG00000026675) #10	ENSCHIG00000009892 #11	ENSCHIG00000016357 #12	ENSCHIG00000006672 #13	TMSB4X (ENSCHIG00000012574) #14	AKR1A1 (ENSCHIG00000005900) #15	NASP (ENSCHIG00000014381) #16	ENSCHIG00000016081 #17	ENSCHIG00000022480 #18	ENSCHIG00000003469 #19	TMEM69 (ENSCHIG00000022471) #20	IPP (ENSCHIG00000023256) #21	MAST2 (ENSCHIG00000022319) #22	PIK3R3 (ENSCHIG00000015779) #23	P3R3URF (ENSCHIG00000014270) #24	TSPAN1 (ENSCHIG00000018316) #25	POMGNT1 (ENSCHIG00000014882) #26	LURAP1 (ENSCHIG00000013931) #27	RAD54L (ENSCHIG00000020118) #28	LRRC41 (ENSCHIG00000027187) #29	ENSCHIG00000013936 #30	NSUN4 (ENSCHIG00000024189) #31	FAAH (ENSCHIG00000022289) #32	DMBX1 (ENSCHIG00000018374) #33	KNCN (ENSCHIG00000012933) #34	MKNK1 (ENSCHIG00000025017) #35	MOB3C (ENSCHIG00000017303) #36	ENSCHIG00000024752 #37
Rambouillet Sheep	MODERN SPECIES		ENSOARG00020000037	HPDL (ENSOARG00020000043)	MUTYH (ENSOARG00020000051)	TOE1 (ENSOARG00020000052)	TESK2 (ENSOARG00020000085)	ENSOARG00020000128 #9	MMACHC (ENSOARG00020000138) #10	PRDX1 (ENSOARG00020000156) #11	AKR1A1 (ENSOARG00020000189) #15	ENSOARG00020000265 #16	CCDC17 (ENSOARG00020000364) #17	GPBP1L1 (ENSOARG00020000433) #18	TMEM69 (ENSOARG00020000462) #20	IPP (ENSOARG00020000478) #21	ENSOARG00020000500	MAST2 (ENSOARG00020000575) #22	PIK3R3 (ENSOARG00020000796) #23	P3R3URF (ENSOARG00020000858) #24	TSPAN1 (ENSOARG00020000865) #25	POMGNT1 (ENSOARG00020000885) #26	LURAP1 (ENSOARG00020000928) #27	RAD54L (ENSOARG00020000936) #28	LRRC41 (ENSOARG00020000971) #29	UQCRH (ENSOARG00020000996) #30	NSUN4 (ENSOARG00020001022) #31	ENSOARG00020001036	FAAH (ENSOARG00020001048) #32	ENSOARG00020001062	DMBX1 (ENSOARG00020001077) #33	TMEM275 (ENSOARG00020001085)	KNCN (ENSOARG00020001096) #34
Bovinae	ANCESTRAL SPECIES	1	ENSGT00510000047220	ENSGT00940000153167.B	ENSGT00940000158765	ENSGT00940000163965 #9	ENSGT00390000007560.l	ENSGT01000000221833	ENSGT00940000165040	ENSGT00390000003464 #10	ENSGT00940000154277.a.b.b.n #11	ENSGT00940000156539 #15	ENSGT00390000016650 #16	ENSGT00390000006459 #17	ENSGT00420000029753.b #18	ENSGT00390000015318 #20	ENSGT00940000158629 #21	ENSGT00940000155705.b #22	ENSGT00940000156259.b #23	ENSGT00700000106049 #24	ENSGT00940000158851 #25	ENSGT00530000063632.A #26	ENSGT00530000063790.a #27	ENSGT00940000156897 #28	ENSGT00390000015908 #29	ENSGT00390000003860 #30	ENSGT00940000153665.b.a.b #31	ENSGT00940000161237 #32	ENSGT00940000163316	ENSGT00940000155505.a #33	ENSGT00390000008086	ENSGT00400000024146 #34	ENSGT00940000162886 #35
Bos	ANCESTRAL SPECIES		ENSGT00940000153167.B	ENSGT00940000158765	ENSGT00940000163965 #9	ENSGT00390000007560.l	ENSGT01000000221833	ENSGT00940000165040	ENSGT00390000003464 #10	ENSGT00940000154277.a.b.b.n #11	ENSGT00940000156539 #15	ENSGT00390000016650 #16	ENSGT00390000006459 #17	ENSGT00420000029753.b #18	ENSGT00390000015318 #20	ENSGT01100000263480.a.b.a.b.a.a.b.b.b	ENSGT00940000158629 #21	ENSGT00940000155705.b #22	ENSGT00940000156259.b #23	ENSGT00700000106049 #24	ENSGT00940000158851 #25	ENSGT00530000063632.A #26	ENSGT00530000063790.a #27	ENSGT00940000156897 #28	ENSGT00390000015908 #29	ENSGT00390000003860 #30	ENSGT00940000153665.b.a.b #31	ENSGT00940000161237 #32	ENSGT00940000163316	ENSGT00940000155505.a #33	ENSGT00390000008086	ENSGT00400000024146 #34	ENSGT00940000162886 #35
Bos_a	ANCESTRAL SPECIES	1	ENSGT00940000153167.B	ENSGT00940000158765	ENSGT00940000163965 #9	ENSGT00390000007560.l	ENSGT01000000221833	ENSGT00940000165040	ENSGT00390000003464 #10	ENSGT00940000154277.a.b.b.n #11	ENSGT00940000156539 #15	ENSGT00390000016650 #16	ENSGT00390000006459 #17	ENSGT00420000029753.b #18	ENSGT00390000015318 #20	ENSGT01100000263480.a.b.a.b.a.a.b.b.b	ENSGT00940000158629 #21	ENSGT00940000155705.b #22	ENSGT00940000156259.b #23	ENSGT00700000106049 #24	ENSGT00940000158851 #25	ENSGT00530000063632.A #26	ENSGT00530000063790.a #27	ENSGT00940000156897 #28	ENSGT00390000015908 #29	ENSGT00390000003860 #30	ENSGT00940000153665.b.a.b #31	ENSGT00940000161237 #32	ENSGT00940000163316	ENSGT00940000155505.a #33	ENSGT00390000008086	ENSGT00400000024146 #34	ENSGT00940000162886 #35
Domestic yak	MODERN SPECIES	22	MUTYH (ENSBGRG00000002983)	TOE1 (ENSBGRG00000002959)	ENSBGRG00000002951	TESK2 (ENSBGRG00000002920)	ENSBGRG00000002899 #9	MMACHC (ENSBGRG00000002868) #10	PRDX1 (ENSBGRG00000002832) #11	AKR1A1 (ENSBGRG00000002800) #15	ENSBGRG00000002784	NASP (ENSBGRG00000002640) #16	CCDC17 (ENSBGRG00000002607) #17	GPBP1L1 (ENSBGRG00000002587) #18	TMEM69 (ENSBGRG00000002565) #20	ENSBGRG00000002559	IPP (ENSBGRG00000002507) #21	MAST2 (ENSBGRG00000002399) #22	ENSBGRG00000002381	PIK3R3 (ENSBGRG00000002338) #23	P3R3URF (ENSBGRG00000002322) #24	TSPAN1 (ENSBGRG00000002304) #25	POMGNT1 (ENSBGRG00000002161) #26	LURAP1 (ENSBGRG00000002137) #27	RAD54L (ENSBGRG00000002083) #28	LRRC41 (ENSBGRG00000002054) #29	ENSBGRG00000002038 #30	ENSBGRG00000002005 #30	NSUN4 (ENSBGRG00000001974) #31	ENSBGRG00000001876 #32	DMBX1 (ENSBGRG00000001838) #33	TMEM275 (ENSBGRG00000001830)	KNCN (ENSBGRG00000001814) #34
Wild yak	MODERN SPECIES	630	HPDL (ENSBMUG00000017150)	MUTYH (ENSBMUG00000017236)	TOE1 (ENSBMUG00000017293)	TESK2 (ENSBMUG00000017319)	ENSBMUG00000017331	ENSBMUG00000017341	CCDC163 (ENSBMUG00000017350)	MMACHC (ENSBMUG00000017361) #10	ENSBMUG00000017429 #11	AKR1A1 (ENSBMUG00000017439) #15	NASP (ENSBMUG00000017479) #16	CCDC17 (ENSBMUG00000017536) #17	GPBP1L1 (ENSBMUG00000017580) #18	TMEM69 (ENSBMUG00000017619) #20	IPP (ENSBMUG00000017678) #21	MAST2 (ENSBMUG00000018202) #22	PIK3R3 (ENSBMUG00000018587) #23	P3R3URF (ENSBMUG00000018621) #24	TSPAN1 (ENSBMUG00000018631) #25	POMGNT1 (ENSBMUG00000018708) #26	LURAP1 (ENSBMUG00000018743) #27	RAD54L (ENSBMUG00000018748) #28	LRRC41 (ENSBMUG00000018769) #29	ENSBMUG00000018791 #30	NSUN4 (ENSBMUG00000018801) #31	FAAH (ENSBMUG00000018835) #32	ENSBMUG00000018858	DMBX1 (ENSBMUG00000018871) #33	KNCN (ENSBMUG00000018887) #34	MKNK1 (ENSBMUG00000019092) #35	MOB3C (ENSBMUG00000019135) #36
Bos_b	ANCESTRAL SPECIES	1	ENSGT00950000182891.a.b	ENSGT00530000063474.A	ENSGT00510000047220	ENSGT00940000153167.B	ENSGT00940000158765	ENSGT00940000163965 #9	ENSGT00390000003464 #10	ENSGT00940000154277.a.b.b.n #11	ENSGT00940000156539 #15	ENSGT00390000016650 #16	ENSGT00390000006459 #17	ENSGT00420000029753.b #18	ENSGT00390000015318 #20	ENSGT01100000263480.a.b.a.b.a.a.b.b.b	ENSGT00940000158629 #21	ENSGT00940000155705.b #22	ENSGT00940000156259.b #23	ENSGT00700000106049 #24	ENSGT00940000158851 #25	ENSGT00530000063632.A #26	ENSGT00530000063790.a #27	ENSGT00940000156897 #28	ENSGT00390000015908 #29	ENSGT00390000003860 #30	ENSGT00940000153665.b.a.b #31	ENSGT00940000161237 #32	ENSGT00940000163316	ENSGT00940000155505.a #33	ENSGT00390000008086	ENSGT00400000024146 #34	ENSGT00940000162886 #35
Cow	MODERN SPECIES	22	ENSBTAG00000040435	HPDL (ENSBTAG00000011241)	MUTYH (ENSBTAG00000011242)	TOE1 (ENSBTAG00000011243)	TESK2 (ENSBTAG00000011244)	ENSBTAG00000017029 #9	MMACHC (ENSBTAG00000017027) #10	PRDX1 (ENSBTAG00000003642) #11	AKR1A1 (ENSBTAG00000000497) #15	NASP (ENSBTAG00000015346) #16	CCDC17 (ENSBTAG00000008808) #17	GPBP1L1 (ENSBTAG00000008810) #18	TMEM69 (ENSBTAG00000052979) #20	ENSBTAG00000051822	IPP (ENSBTAG00000016377) #21	MAST2 (ENSBTAG00000020444) #22	PIK3R3 (ENSBTAG00000002979) #23	P3R3URF (ENSBTAG00000048829) #24	TSPAN1 (ENSBTAG00000013320) #25	LURAP1 (ENSBTAG00000024144) #27	POMGNT1 (ENSBTAG00000013322) #26	RAD54L (ENSBTAG00000019901) #28	LRRC41 (ENSBTAG00000045664) #29	UQCRH (ENSBTAG00000009603) #30	NSUN4 (ENSBTAG00000015891) #31	FAAH (ENSBTAG00000007507) #32	ENSBTAG00000054510	ENSBTAG00000037858	DMBX1 (ENSBTAG00000009625) #33	TMEM275 (ENSBTAG00000053814)	KNCN (ENSBTAG00000030532) #34
Hybrid Bos Indicus	MODERN SPECIES	22	ZSWIM5 (ENSBIXG00005010611)	ENSBIXG00005010633	HPDL (ENSBIXG00005000651)	MUTYH (ENSBIXG00005010713)	TOE1 (ENSBIXG00005010766)	TESK2 (ENSBIXG00005000947)	ENSBIXG00005000952 #9	MMACHC (ENSBIXG00005000959) #10	ENSBIXG00005010891 #11	ENSBIXG00005010914 ##12	NASP (ENSBIXG00005001013) #16	ENSBIXG00005011146	GPBP1L1 (ENSBIXG00005011221) #18	TMEM69 (ENSBIXG00005001050) #20	IPP (ENSBIXG00005011243) #21	MAST2 (ENSBIXG00005001084) #22	PIK3R3 (ENSBIXG00005011410) #23	P3R3URF (ENSBIXG00005011452) #24	TSPAN1 (ENSBIXG00005011467) #25	POMGNT1 (ENSBIXG00005011564) #26	LURAP1 (ENSBIXG00005011609) #27	RAD54L (ENSBIXG00005011638) #28	LRRC41 (ENSBIXG00005001150) #29	ENSBIXG00005011690 #30	NSUN4 (ENSBIXG00005011707) #31	FAAH (ENSBIXG00005011771) #32	ENSBIXG00005011831	DMBX1 (ENSBIXG00005011839) #33	TMEM275 (ENSBIXG00005001181)	KNCN (ENSBIXG00005011880) #34	MKNK1 (ENSBIXG00005006328) #35
American bison	MODERN SPECIES	3172	MUTYH (ENSBBBG00000016504)	TOE1 (ENSBBBG00000016322)	TESK2 (ENSBBBG00000016294)	ENSBBBG00000016258	ENSBBBG00000016254	CCDC163 (ENSBBBG00000008918)	MMACHC (ENSBBBG00000016244) #10	PRDX1 (ENSBBBG00000016232) #11	ENSBBBG00000016198 ##12	AKR1A1 (ENSBBBG00000016192) #15	NASP (ENSBBBG00000016147) #16	CCDC17 (ENSBBBG00000015992) #17	GPBP1L1 (ENSBBBG00000015933) #18	TMEM69 (ENSBBBG00000015914) #20	IPP (ENSBBBG00000015907) #21	MAST2 (ENSBBBG00000015890) #22	PIK3R3 (ENSBBBG00000015789) #23	P3R3URF (ENSBBBG00000015715) #24	TSPAN1 (ENSBBBG00000015713) #25	POMGNT1 (ENSBBBG00000003921) #26	LURAP1 (ENSBBBG00000003915) #27	RAD54L (ENSBBBG00000015678) #28	LRRC41 (ENSBBBG00000015647) #29	ENSBBBG00000003452 #30	NSUN4 (ENSBBBG00000003464) #31	FAAH (ENSBBBG00000015607) #32	ENSBBBG00000003883	DMBX1 (ENSBBBG00000015504) #33	KNCN (ENSBBBG00000003859) #34	MKNK1 (ENSBBBG00000015483) #35	MOB3C (ENSBBBG00000003833) #36