Amniota	ANCESTRAL SPECIES	5	ENSGT00950000185293	ENSGT00940000158692	ENSGT00390000017740.b ##7	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT01040000241180	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37
Mammalia	ANCESTRAL SPECIES	8	ENSGT00950000185293	ENSGT00940000158692	ENSGT00390000017740.b ##7	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088
Theria	ANCESTRAL SPECIES	2	ENSGT00940000158692	ENSGT00390000017740.b ##7	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00960000187820	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Eutheria	ANCESTRAL SPECIES	1	ENSGT00940000158692	ENSGT00390000017740.b ##7	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT00940000158692	ENSGT00390000017740.b ##7	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT00950000185293	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00740000115534.a.b.f.a.b	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.z.a #19	ENSGT00940000153832.f.`b #21	ENSGT00940000155811 #22	ENSGT00740000115534.a.b.f.a.b	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088
Glires	ANCESTRAL SPECIES	4	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.m.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.z.a #19	ENSGT00940000153832.f.`b #21	ENSGT00940000155811 #22	ENSGT00740000115534.a.b.f.a.b	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088
Rodentia	ANCESTRAL SPECIES	5	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r.f #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.m.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.z.a #19	ENSGT00940000153832.f.z.b ##21	ENSGT00940000153832.f.`b.b #21	ENSGT00940000153832.f.`b.a.a ##21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r.f #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.m.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.z.a #19	ENSGT00940000153832.f.z.b ##21	ENSGT00940000153832.f.`b.b #21	ENSGT00940000153832.f.`b.a.a ##21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r.f #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.m.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.z.a #19	ENSGT00940000153832.f.z.b ##21	ENSGT00940000153832.f.`b.b #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000161565.b #33	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088
Muroidea	ANCESTRAL SPECIES	5	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r.f #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.m.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.z.a #19	ENSGT00940000153832.f.z.b ##21	ENSGT00940000153832.f.`b.b #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000161565.b #33	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088
Muroidea_A	ANCESTRAL SPECIES	22	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r.f #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.m.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.z.a #19	ENSGT00940000153832.f.`b.b #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000161565.b #33	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088
Murinae	ANCESTRAL SPECIES	22	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r.f #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.m.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.z.b ##21	ENSGT00940000153832.f.z.a #19	ENSGT00940000153832.f.`b.b #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000161565.b #33	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088
Mus	ANCESTRAL SPECIES	23	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r.f #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.m.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.z.b ##21	ENSGT00940000153832.f.`b.b #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000161565.b #33	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00800000125327 #36	ENSGT00390000001116 #37
Shrew mouse	MODERN SPECIES	22	Cand1 (MGP_PahariEiJ_G0031243) #7	Dyrk2 (MGP_PahariEiJ_G0031244) #8	Ifng (MGP_PahariEiJ_G0031245) #9	MGP_PahariEiJ_G0031246 #10	Mdm1 (MGP_PahariEiJ_G0031247) #11	Rap1b (MGP_PahariEiJ_G0031248) #12	Nup107 (MGP_PahariEiJ_G0031249) #13	Slc35e3 (MGP_PahariEiJ_G0031250) #14	Mdm2 (MGP_PahariEiJ_G0031251) #15	Cpm (MGP_PahariEiJ_G0031252) #16	Cpsf6 (MGP_PahariEiJ_G0031253) #17	MGP_PahariEiJ_G0031254 #18	MGP_PahariEiJ_G0031255 #19	MGP_PahariEiJ_G0031256 #20	9530003J23Rik (MGP_PahariEiJ_G0031257) #21	Yeats4 (MGP_PahariEiJ_G0031258) #22	Frs2 (MGP_PahariEiJ_G0031259) #23	Cct2 (MGP_PahariEiJ_G0031260) #24	Lrrc10 (MGP_PahariEiJ_G0031261) #25	Best3 (MGP_PahariEiJ_G0031262) #26	Rab3ip (MGP_PahariEiJ_G0031263) #27	Myrfl (MGP_PahariEiJ_G0031264) #28	Cnot2 (MGP_PahariEiJ_G0031265) #29	Kcnmb4 (MGP_PahariEiJ_G0031266) #30	Ptprb (MGP_PahariEiJ_G0031267) #31	Ptprr (MGP_PahariEiJ_G0031268) #32	MGP_PahariEiJ_G0031269 #33	Tspan8 (MGP_PahariEiJ_G0031270) #34	Lgr5 (MGP_PahariEiJ_G0031271) #35	MGP_PahariEiJ_G0031272 #36	Zfc3h1 (MGP_PahariEiJ_G0031273) #37
Mus_A	ANCESTRAL SPECIES	11	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r.f #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.m.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.z.b ##21	ENSGT00940000153832.f.z.a.e #19	ENSGT00940000153832.f.`b.b #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000161565.b #33	ENSGT00940000158153 #34	ENSGT00800000125327 #36	ENSGT00940000160214 #35	ENSGT00390000001116 #37
Mus_B	ANCESTRAL SPECIES	10	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r.f #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.m.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.z.a.f #19	ENSGT00940000153832.f.z.a.e #19	ENSGT00940000153832.f.`b.b #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000161565.b #33	ENSGT00940000158153 #34	ENSGT00800000125327 #36	ENSGT00940000160214 #35	ENSGT00390000001116 #37
Mouse	MODERN SPECIES	1	Gm9040 (ENSMUSG00000112814)	Il22b (ENSMUSG00000090461) #10	Gm32802 (ENSMUSG00000112252)	Gm32717 (ENSMUSG00000112216)	Il22 (ENSMUSG00000074695) #10	Mdm1 (ENSMUSG00000020212) #11	Rap1b (ENSMUSG00000052681) #12	Nup107 (ENSMUSG00000052798) #13	Slc35e3 (ENSMUSG00000060181) #14	Mdm2 (ENSMUSG00000020184) #15	Cpm (ENSMUSG00000020183) #16	Cpsf6 (ENSMUSG00000055531) #17	Lyz1 (ENSMUSG00000069515) #19	Lyz2 (ENSMUSG00000069516) #19	9530003J23Rik (ENSMUSG00000020177) #21	Yeats4 (ENSMUSG00000020171) #22	Frs2 (ENSMUSG00000020170) #23	Cct2 (ENSMUSG00000034024) #24	Lrrc10 (ENSMUSG00000060187) #25	Best3 (ENSMUSG00000020169) #26	Rab3ip (ENSMUSG00000064181) #27	Myrfl (ENSMUSG00000034057) #28	Cnot2 (ENSMUSG00000020166) #29	Kcnmb4 (ENSMUSG00000054934) #30	Ptprb (ENSMUSG00000020154) #31	Ptprr (ENSMUSG00000020151) #32	Tspan8 (ENSMUSG00000034127) #34	A930009A15Rik (ENSMUSG00000092210) #36	Lgr5 (ENSMUSG00000020140) #35	Zfc3h1 (ENSMUSG00000034163) #37	Thap2 (ENSMUSG00000020137)
Mus_C	ANCESTRAL SPECIES	7	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r.f #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.m.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.z.b ##21	ENSGT00940000153832.f.z.a.f #19	ENSGT00940000153832.f.z.a.e #19	ENSGT00940000153832.f.`b.b #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000161565.b #33	ENSGT00940000158153 #34	ENSGT00800000125327 #36	ENSGT00940000160214 #35	ENSGT00390000001116 #37
Steppe mouse	MODERN SPECIES	2932															9530003J23Rik (ENSMSIG00000009383) #21	Yeats4 (ENSMSIG00000009358) #22	Frs2 (ENSMSIG00000009335) #23	Cct2 (ENSMSIG00000009279) #24	Lrrc10 (ENSMSIG00000009273) #25	ENSMSIG00000009268	Best3 (ENSMSIG00000009246) #26	Rab3ip (ENSMSIG00000009137) #27	ENSMSIG00000009124	Myrfl (ENSMSIG00000009071) #28	ENSMSIG00000009056	Cnot2 (ENSMSIG00000008826) #29	Kcnmb4 (ENSMSIG00000008796) #30	Ptprb (ENSMSIG00000008638) #31	Ptprr (ENSMSIG00000008531) #32
spretus	MODERN SPECIES	1	Cand1 (MGP_SPRETEiJ_G0016668) #7	Dyrk2 (MGP_SPRETEiJ_G0016667) #8	Ifng (MGP_SPRETEiJ_G0016666) #9	MGP_SPRETEiJ_G0016664 #10	Mdm1 (MGP_SPRETEiJ_G0016663) #11	Rap1b (MGP_SPRETEiJ_G0016662) ##12	Nup107 (MGP_SPRETEiJ_G0016661) #13	Slc35e3 (MGP_SPRETEiJ_G0016660) #14	Mdm2 (MGP_SPRETEiJ_G0016659) #15	Cpm (MGP_SPRETEiJ_G0016658) #16	Cpsf6 (MGP_SPRETEiJ_G0016657) #17	MGP_SPRETEiJ_G0016656 #20	Lyz1 (MGP_SPRETEiJ_G0016655) #19	Lyz2 (MGP_SPRETEiJ_G0016654) #19	9530003J23Rik (MGP_SPRETEiJ_G0016653) #21	Yeats4 (MGP_SPRETEiJ_G0016652) #22	Frs2 (MGP_SPRETEiJ_G0016651) #23	Cct2 (MGP_SPRETEiJ_G0016650) #24	Lrrc10 (MGP_SPRETEiJ_G0016649) #25	Best3 (MGP_SPRETEiJ_G0016648) #26	MGP_SPRETEiJ_G0016647	Rab3ip (MGP_SPRETEiJ_G0016646) #27	Myrfl (MGP_SPRETEiJ_G0016645) #28	Cnot2 (MGP_SPRETEiJ_G0016644) #29	Kcnmb4 (MGP_SPRETEiJ_G0016643) #30	Ptprb (MGP_SPRETEiJ_G0016642) #31	MGP_SPRETEiJ_G0016641 #33	Ptprr (MGP_SPRETEiJ_G0016640) #32	Tspan8 (MGP_SPRETEiJ_G0016639) #34	MGP_SPRETEiJ_G0016638 #36	Lgr5 (MGP_SPRETEiJ_G0016637) #35
Ryukyu mouse	MODERN SPECIES	1	Cand1 (MGP_CAROLIEiJ_G0015844) #7	Dyrk2 (MGP_CAROLIEiJ_G0015843) #8	Ifng (MGP_CAROLIEiJ_G0015842) #9	MGP_CAROLIEiJ_G0015841 #10	Mdm1 (MGP_CAROLIEiJ_G0015840) #11	Rap1b (MGP_CAROLIEiJ_G0015839) #12	Nup107 (MGP_CAROLIEiJ_G0015838) #13	Slc35e3 (MGP_CAROLIEiJ_G0015837) #14	Mdm2 (MGP_CAROLIEiJ_G0015836) #15	Cpm (MGP_CAROLIEiJ_G0015835) #16	Cpsf6 (MGP_CAROLIEiJ_G0015834) #17	Lyz1 (MGP_CAROLIEiJ_G0015833) #19	MGP_CAROLIEiJ_G0015832 #20	Lyz2 (MGP_CAROLIEiJ_G0015831) #19	9530003J23Rik (MGP_CAROLIEiJ_G0015830) #21	Yeats4 (MGP_CAROLIEiJ_G0015829) #22	Frs2 (MGP_CAROLIEiJ_G0015828) #23	Cct2 (MGP_CAROLIEiJ_G0015827) #24	Lrrc10 (MGP_CAROLIEiJ_G0015826) #25	Best3 (MGP_CAROLIEiJ_G0015825) #26	Rab3ip (MGP_CAROLIEiJ_G0015824) #27	Myrfl (MGP_CAROLIEiJ_G0015823) #28	Cnot2 (MGP_CAROLIEiJ_G0015822) #29	Kcnmb4 (MGP_CAROLIEiJ_G0015821) #30	Ptprb (MGP_CAROLIEiJ_G0015820) #31	MGP_CAROLIEiJ_G0015819 #33	Ptprr (MGP_CAROLIEiJ_G0015818) #32	Tspan8 (MGP_CAROLIEiJ_G0015817) #34	MGP_CAROLIEiJ_G0015816 #36	Lgr5 (MGP_CAROLIEiJ_G0015815) #35	Zfc3h1 (MGP_CAROLIEiJ_G0015814) #37
Rat	MODERN SPECIES	17	Dyrk2 (ENSRNOG00000007821) #8	Ifng (ENSRNOG00000007468) #9	Il22 (ENSRNOG00000007365) #10	Mdm1 (ENSRNOG00000007286) #11	AABR07057217.1 (ENSRNOG00000025487)	ENSRNOG00000062386	Rap1b (ENSRNOG00000007048) #12	Nup107 (ENSRNOG00000006541) #13	Slc35e3 (ENSRNOG00000027622) #14	Mdm2 (ENSRNOG00000006304) #15	Cpm (ENSRNOG00000066159) #16	Cpsf6 (ENSRNOG00000005927) #17	Lyz2 (ENSRNOG00000005825) #19	Lyc2 (ENSRNOG00000034139) ##21	RGD1306474 (ENSRNOG00000005790) #21	Yeats4 (ENSRNOG00000005689) #22	Frs2 (ENSRNOG00000005642) #23	Cct2 (ENSRNOG00000021317) #24	Lrrc10 (ENSRNOG00000005555)	Rtcb-ps1 (ENSRNOG00000005546)	Best3 (ENSRNOG00000005491) #26	Rab3ip (ENSRNOG00000005362) #27	Myrfl (ENSRNOG00000021833) #28	ENSRNOG00000069255	Cnot2 (ENSRNOG00000004909) #29	Kcnmb4 (ENSRNOG00000054458) #30	Ptprb (ENSRNOG00000055293) #31	Taf7l-ps1 (ENSRNOG00000022632) #33	Ptprr (ENSRNOG00000004483) #32	Tspan8 (ENSRNOG00000004411) #34	Lgr5 (ENSRNOG00000004221) #35
Cricetidae	ANCESTRAL SPECIES	21	ENSGT00940000161222	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550.c #10	ENSGT00390000004106 #11	ENSGT00940000154429.r.f #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.m.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.z.a #19	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000161565.b #33	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116.y.b #37	ENSGT00940000161088
Cricetinae	ANCESTRAL SPECIES																	ENSGT00940000155811 #22
Golden Hamster	MODERN SPECIES	732	Dyrk2 (ENSMAUG00000015205) #8	Ifng (ENSMAUG00000013690) #9	ENSMAUG00000012042 #10	Mdm1 (ENSMAUG00000015500) #11	Rap1b (ENSMAUG00000020421) #12	ENSMAUG00000009558	Nup107 (ENSMAUG00000022100) #13	Slc35e3 (ENSMAUG00000020157) #14	ENSMAUG00000022194 #15	Cpm (ENSMAUG00000003402) #16	Cpsf6 (ENSMAUG00000013240) #17	ENSMAUG00000006745 ##21	ENSMAUG00000000364 #19	ENSMAUG00000009695 #19	ENSMAUG00000017247 #20	Yeats4 (ENSMAUG00000007789) #22	ENSMAUG00000004048	Frs2 (ENSMAUG00000017762) #23	Lrrc10 (ENSMAUG00000014140) #25	Cct2 (ENSMAUG00000011514) #24	Best3 (ENSMAUG00000012191) #26	ENSMAUG00000017347 #27	Myrfl (ENSMAUG00000001194) #28	Cnot2 (ENSMAUG00000012049) #29	Kcnmb4 (ENSMAUG00000021332) #30	Ptprb (ENSMAUG00000021522) #31	ENSMAUG00000014901 #33	Ptprr (ENSMAUG00000000754) #32	Lgr5 (ENSMAUG00000020934) #35	ENSMAUG00000021091 #37	ENSMAUG00000010789 #37
Cricetidae_B	ANCESTRAL SPECIES	29																ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000161565.b #33	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116.y.b #37	ENSGT00940000161088
Prairie vole	MODERN SPECIES	10	ENSMOCG00000000670	ENSMOCG00000021063	Stat6 (ENSMOCG00000003830)	Nab2 (ENSMOCG00000020714)	Nemp1 (ENSMOCG00000011584)	Myo1a (ENSMOCG00000011760)	Tac2 (ENSMOCG00000000889)	Zbtb39 (ENSMOCG00000001699)	Gpr182 (ENSMOCG00000017417)	ENSMOCG00000020549	ENSMOCG00000011639	ENSMOCG00000005192	ENSMOCG00000012771	Neurod4 (ENSMOCG00000010116)	Tespa1 (ENSMOCG00000011978)	Yeats4 (ENSMOCG00000017260) #22	Frs2 (ENSMOCG00000012695) #23	Cct2 (ENSMOCG00000001863) #24	ENSMOCG00000008051	Best3 (ENSMOCG00000012175) #26	ENSMOCG00000000389 #27	Myrfl (ENSMOCG00000019020) #28	Cnot2 (ENSMOCG00000011255) #29	Kcnmb4 (ENSMOCG00000002276) #30	Ptprb (ENSMOCG00000009646) #31	Ptprr (ENSMOCG00000016397) #32	Tspan8 (ENSMOCG00000002461) #34	Lgr5 (ENSMOCG00000014250) #35	ENSMOCG00000016538 #37	ENSMOCG00000020539 #37	Thap2 (ENSMOCG00000000145)
Northern American deer mouse	MODERN SPECIES	9	Pmel (ENSPEMG00000011719)	Dgka (ENSPEMG00000015750)	Pym1 (ENSPEMG00000009372)	Mmp19 (ENSPEMG00000015034)	Tmem198b (ENSPEMG00000018605)	Dnajc14 (ENSPEMG00000013016)	Ormdl2 (ENSPEMG00000016964)	Sarnp (ENSPEMG00000000923)	Gdf11 (ENSPEMG00000001312)	Cd63 (ENSPEMG00000015664)	Rdh5 (ENSPEMG00000017945)	Itga7 (ENSPEMG00000001371)	Mettl7b (ENSPEMG00000001761)	ENSPEMG00000027203 #19	ENSPEMG00000031079 #19	Yeats4 (ENSPEMG00000023320) #22	Frs2 (ENSPEMG00000024403) #23	Cct2 (ENSPEMG00000022366) #24	Lrrc10 (ENSPEMG00000004624) #25	Best3 (ENSPEMG00000025611) #26	Rab3ip (ENSPEMG00000023304) #27	Myrfl (ENSPEMG00000022385) #28	Cnot2 (ENSPEMG00000023296) #29	Kcnmb4 (ENSPEMG00000022894) #30	Ptprb (ENSPEMG00000021454) #31	ENSPEMG00000030116 #33	Ptprr (ENSPEMG00000023593) #32	Tspan8 (ENSPEMG00000022256) #34	Lgr5 (ENSPEMG00000021300) #35	Zfc3h1 (ENSPEMG00000023596) #37	Thap2 (ENSPEMG00000004430)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1847													ENSNGAG00000014203	ENSNGAG00000016878	ENSNGAG00000001543 ##21	Yeats4 (ENSNGAG00000006357) #22	ENSNGAG00000012862	Frs2 (ENSNGAG00000007006) #23	Cct2 (ENSNGAG00000016113) #24	Lrrc10 (ENSNGAG00000003213) #25	Best3 (ENSNGAG00000017724) #26	ENSNGAG00000016570 #27	Myrfl (ENSNGAG00000006666) #28
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	42	Irak3 (ENSJJAG00000021736)	Helb (ENSJJAG00000023274)	Grip1 (ENSJJAG00000014449)	ENSJJAG00000011924	Cand1 (ENSJJAG00000018341) #7	Dyrk2 (ENSJJAG00000017568) #8	ENSJJAG00000017915 #10	Mdm1 (ENSJJAG00000022993) #11	Rap1b (ENSJJAG00000013763) #12	ENSJJAG00000016497	Slc35e3 (ENSJJAG00000016160) #14	ENSJJAG00000019834 #15	Cpm (ENSJJAG00000018694) #16	Cpsf6 (ENSJJAG00000014647) #17	9530003J23Rik (ENSJJAG00000016568) #21	ENSJJAG00000018023 #22	Frs2 (ENSJJAG00000001461) #23	ENSJJAG00000019620 #24	Lrrc10 (ENSJJAG00000004483) #25	Best3 (ENSJJAG00000021694) #26	ENSJJAG00000017104 #27	Myrfl (ENSJJAG00000022398) #28	ENSJJAG00000016112	Cnot2 (ENSJJAG00000021519) #29	Kcnmb4 (ENSJJAG00000002905) #30	Ptprb (ENSJJAG00000017486) #31	Ptprr (ENSJJAG00000009792) #32	ENSJJAG00000015788 #33	Tspan8 (ENSJJAG00000016135) #34	Lgr5 (ENSJJAG00000022872) #35	ENSJJAG00000018166 #37
Lesser Egyptian jerboa	MODERN SPECIES	283															Ipo11 (ENSJJAG00000007223)	ENSJJAG00000007445 #22
Lesser Egyptian jerboa	MODERN SPECIES	104								Mms22l (ENSJJAG00000009973)	ENSJJAG00000013259	Klhl32 (ENSJJAG00000022976)	ENSJJAG00000023258	Ndufaf4 (ENSJJAG00000023657)	Gpr63 (ENSJJAG00000013298)	Fhl5 (ENSJJAG00000000636)	Ufl1 (ENSJJAG00000006182)	ENSJJAG00000010016 #22	ENSJJAG00000013253	Fut9 (ENSJJAG00000022594)	ENSJJAG00000023083	Manea (ENSJJAG00000023182)	ENSJJAG00000023315	ENSJJAG00000023379	Epha7 (ENSJJAG00000016879)	ENSJJAG00000017184	ENSJJAG00000017512	ENSJJAG00000017791	ENSJJAG00000017896	ENSJJAG00000018137	ENSJJAG00000018365	Map3k7 (ENSJJAG00000020494)	ENSJJAG00000013324
Kangaroo rat	MODERN SPECIES	322	Tmbim4 (ENSDORG00000014156)	Irak3 (ENSDORG00000013361)	Grip1 (ENSDORG00000013369)	Cand1 (ENSDORG00000024856) #7	Dyrk2 (ENSDORG00000024950) #8	ENSDORG00000001441 #10	Mdm1 (ENSDORG00000001536) #11	Rap1b (ENSDORG00000001086) #12	Nup107 (ENSDORG00000005178) #13	Slc35e3 (ENSDORG00000029538) #14	Mdm2 (ENSDORG00000007222) #15	Cpm (ENSDORG00000008071) #16	Cpsf6 (ENSDORG00000002950) #17	ENSDORG00000004525 #21	ENSDORG00000029604 ##21	Yeats4 (ENSDORG00000004942) #22	Frs2 (ENSDORG00000026974) #23	Cct2 (ENSDORG00000010325) #24	Lrrc10 (ENSDORG00000010326) #25	Best3 (ENSDORG00000010327) #26	ENSDORG00000029506	ENSDORG00000024631	ENSDORG00000027759 #27	Myrfl (ENSDORG00000000849) #28	ENSDORG00000026732	Cnot2 (ENSDORG00000011201) #29	Kcnmb4 (ENSDORG00000027718) #30	Ptprb (ENSDORG00000011204) #31	Ptprr (ENSDORG00000000928) #32	Tspan8 (ENSDORG00000003043) #34	Lgr5 (ENSDORG00000006266) #35
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r.f #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.m.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.z.a #19	ENSGT00940000153832.f.z.b ##21	ENSGT00940000153832.f.`b.b #21	ENSGT00940000153832.f.`b.a.a ##21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Sciuridae	ANCESTRAL SPECIES	14	ENSGT00950000185293	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r.f #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.m.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.z.a.b.a #19	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Marmotini	ANCESTRAL SPECIES	4	ENSGT00950000185293	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r.f #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.m.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.z.a.b.a.a.a #19	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Marmotini_b	ANCESTRAL SPECIES	3	ENSGT00950000185293	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r.f #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.m.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.z.a.b.a.a.a #19	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Squirrel	MODERN SPECIES	145	HELB (ENSSTOG00000007077)	GRIP1 (ENSSTOG00000007094)	CAND1 (ENSSTOG00000006549) #7	DYRK2 (ENSSTOG00000007947) #8	IFNG (ENSSTOG00000014955) #9	IL26 (ENSSTOG00000001787)	IL22 (ENSSTOG00000012773) #10	MDM1 (ENSSTOG00000022138) #11	RAP1B (ENSSTOG00000011240) ##12	NUP107 (ENSSTOG00000003887) #13	SLC35E3 (ENSSTOG00000003925) #14	ENSSTOG00000014702 #15	CPM (ENSSTOG00000011119) #16	CPSF6 (ENSSTOG00000014133) #17	LYZ (ENSSTOG00000021850) #19	YEATS4 (ENSSTOG00000014144) #22	FRS2 (ENSSTOG00000014028) #23	CCT2 (ENSSTOG00000014029) #24	LRRC10 (ENSSTOG00000014043) #25	BEST3 (ENSSTOG00000014743) #26	RAB3IP (ENSSTOG00000014751) #27	MYRFL (ENSSTOG00000020113) #28	CNOT2 (ENSSTOG00000011114) #29	KCNMB4 (ENSSTOG00000020934) #30	PTPRB (ENSSTOG00000013109) #31	PTPRR (ENSSTOG00000013134) #32
Arctic ground squirrel	MODERN SPECIES	45	DYRK2 (ENSUPAG00010023314) #8	IFNG (ENSUPAG00010023315) #9	IL26 (ENSUPAG00010023316)	IL22 (ENSUPAG00010023317) #10	MDM1 (ENSUPAG00010023318) #11	RAP1B (ENSUPAG00010023328) #12	NUP107 (ENSUPAG00010023330) #13	SLC35E3 (ENSUPAG00010023335) #14	ENSUPAG00010023340 #15	CPM (ENSUPAG00010023404) #16	CPSF6 (ENSUPAG00010023405) #17	ENSUPAG00010023406 #19	ENSUPAG00010023407	ENSUPAG00010023408 #19	ENSUPAG00010023409 #19	YEATS4 (ENSUPAG00010023410) #22	FRS2 (ENSUPAG00010023411) #23	CCT2 (ENSUPAG00010023412) #24	LRRC10 (ENSUPAG00010023413) #25	BEST3 (ENSUPAG00010023414) #26	RAB3IP (ENSUPAG00010023415) #27	MYRFL (ENSUPAG00010023416) #28	CNOT2 (ENSUPAG00010023418) #29	KCNMB4 (ENSUPAG00010023419) #30	PTPRB (ENSUPAG00010023420) #31	ENSUPAG00010023422	PTPRR (ENSUPAG00010023424) #32	TSPAN8 (ENSUPAG00010023425) #34	LGR5 (ENSUPAG00010023426) #35	ZFC3H1 (ENSUPAG00010023427) #37	THAP2 (ENSUPAG00010023428)
Alpin marmot	MODERN SPECIES	39	ENSMMMG00000002384	ENSMMMG00000002376	VTI1A (ENSMMMG00000002342)	ZDHHC6 (ENSMMMG00000002314)	ACSL5 (ENSMMMG00000002283)	TECTB (ENSMMMG00000002252)	GPAM (ENSMMMG00000002212)	ADRA2A (ENSMMMG00000002204)	ENSMMMG00000002171	ENSMMMG00000002162	PDCD4 (ENSMMMG00000002133)	ENSMMMG00000002115	RBM20 (ENSMMMG00000002043)	SMC3 (ENSMMMG00000002004)	DUSP5 (ENSMMMG00000001986)	ENSMMMG00000001972 #22	SMNDC1 (ENSMMMG00000001963)	ENSMMMG00000001959	MXI1 (ENSMMMG00000001946)	ADD3 (ENSMMMG00000001707)	ENSMMMG00000001684	XPNPEP1 (ENSMMMG00000001605)	ENSMMMG00000001594	ENSMMMG00000001588	SORCS1 (ENSMMMG00000001325)	SORCS3 (ENSMMMG00000001241)	CFAP58 (ENSMMMG00000001204)	ITPRIP (ENSMMMG00000001191)	GSTO2 (ENSMMMG00000001167)	GSTO1 (ENSMMMG00000001145)	ENSMMMG00000001103
Eurasian red squirrel	MODERN SPECIES	14	IL26 (ENSSVLG00005013845)	IL22 (ENSSVLG00005013922) #10	MDM1 (ENSSVLG00005014085) #11	ENSSVLG00005014489 #12	NUP107 (ENSSVLG00005014845) #13	ENSSVLG00005015165	SLC35E3 (ENSSVLG00005015217) #14	ENSSVLG00005015364 #15	CPM (ENSSVLG00005015669) #16	ENSSVLG00005015766	ENSSVLG00005015790	CPSF6 (ENSSVLG00005015843) #17	ENSSVLG00005015935 #19	ENSSVLG00005015994 #19	ENSSVLG00005016075 ##21	YEATS4 (ENSSVLG00005016130) #22	ENSSVLG00005016198	FRS2 (ENSSVLG00005016214) #23	CCT2 (ENSSVLG00005016241) #24	LRRC10 (ENSSVLG00005016313) #25	BEST3 (ENSSVLG00005016331) #26	RAB3IP (ENSSVLG00005016537) #27	MYRFL (ENSSVLG00005016658) #28	CNOT2 (ENSSVLG00005017415) #29	KCNMB4 (ENSSVLG00005017550) #30	PTPRR (ENSSVLG00005020729) #32	ENSSVLG00005021178	TSPAN8 (ENSSVLG00005021206) #34	LGR5 (ENSSVLG00005021355) #35	ENSSVLG00005021584	ZFC3H1 (ENSSVLG00005021620) #37
Hystricomorpha	DUPLICATION
Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r.f #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.m.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.`b.b #21	ENSGT00940000153832.f.`b.a.a ##21	ENSGT00940000155811.g #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r.f.b #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.m.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.`b.b #21	ENSGT00940000153832.f.`b.a.a ##21	ENSGT00940000155811.g #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Guinea pig	MODERN SPECIES	9	DYRK2 (ENSCPOG00000000608) #8	IFNG (ENSCPOG00000011038) #9	IL22 (ENSCPOG00000009922) #10	MDM1 (ENSCPOG00000027490) #11	RAP1B (ENSCPOG00000032380) #12	NUP107 (ENSCPOG00000008635) #13	SLC35E3 (ENSCPOG00000004322) #14	MDM2 (ENSCPOG00000004323) #15	CPM (ENSCPOG00000004331) #16	CPSF6 (ENSCPOG00000015201) #17	ENSCPOG00000037750 #21	ENSCPOG00000000748 #21	LYZ (ENSCPOG00000001623) ##21	ENSCPOG00000040234 ##21	ENSCPOG00000030423 ##21	YEATS4 (ENSCPOG00000040360) #22	FRS2 (ENSCPOG00000002836) #23	CCT2 (ENSCPOG00000012867) #24	ENSCPOG00000002841	BEST3 (ENSCPOG00000001321) #26	RAB3IP (ENSCPOG00000013843) #27	MYRFL (ENSCPOG00000013850) #28	CNOT2 (ENSCPOG00000004756) #29	PTPRB (ENSCPOG00000005700) #31	PTPRR (ENSCPOG00000005707) #32	TSPAN8 (ENSCPOG00000034308) #34	LGR5 (ENSCPOG00000036056) #35	ZFC3H1 (ENSCPOG00000009504) #37	THAP2 (ENSCPOG00000009524)	TMEM19 (ENSCPOG00000025019)	RAB21 (ENSCPOG00000004741)
Hystricomorpha_b	ANCESTRAL SPECIES	13	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r.f.b #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.m.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.`b.b #21	ENSGT00940000153832.f.`b.a.a ##21	ENSGT00940000155811.g #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Long-tailed chinchilla	DUPLICATION
Long-tailed chinchilla	MODERN SPECIES	167	BHLHA15 (ENSCLAG00000006581)	LMTK2 (ENSCLAG00000005806)	ENSCLAG00000007617	ENSCLAG00000006812	ENSCLAG00000004477	ENSCLAG00000009853	AIMP2 (ENSCLAG00000009734)	ANKRD61 (ENSCLAG00000008441)	EIF2AK1 (ENSCLAG00000007600)	ENSCLAG00000006764	USP42 (ENSCLAG00000004585)	ENSCLAG00000007268	ENSCLAG00000007013	ENSCLAG00000006763	RAC1 (ENSCLAG00000009375)	ENSCLAG00000014915 #22	DAGLB (ENSCLAG00000010405)	KDELR2 (ENSCLAG00000008164)	GRID2IP (ENSCLAG00000004690)	ZDHHC4 (ENSCLAG00000005882)	INTS15 (ENSCLAG00000005799)	ZNF853 (ENSCLAG00000005585)	ZNF316 (ENSCLAG00000004965)	ZNF12 (ENSCLAG00000007714)	EIF3B (ENSCLAG00000006140)	ENSCLAG00000005193	CHST12 (ENSCLAG00000005658)	GRIFIN (ENSCLAG00000005569)	LFNG (ENSCLAG00000005347)	TTYH3 (ENSCLAG00000010104)	ENSCLAG00000008881
Long-tailed chinchilla	MODERN SPECIES	112	ATOH1 (ENSCLAG00000017994)	ENSCLAG00000005947	ENSCLAG00000006491	PDLIM5 (ENSCLAG00000006359)	BMPR1B (ENSCLAG00000009761)	UNC5C (ENSCLAG00000009041)	ENSCLAG00000005449	RAP1GDS1 (ENSCLAG00000004545)	TSPAN5 (ENSCLAG00000006295)	ENSCLAG00000004478	METAP1 (ENSCLAG00000006599)	ADH5 (ENSCLAG00000015753)	ADH4 (ENSCLAG00000012980)	ENSCLAG00000009188 #19	LYZ (ENSCLAG00000009779) ##21	ENSCLAG00000005802 #22	FRS2 (ENSCLAG00000006060) #23	CCT2 (ENSCLAG00000007009) #24	LRRC10 (ENSCLAG00000017615) #25	BEST3 (ENSCLAG00000006021) #26	RAB3IP (ENSCLAG00000005722) #27	MYRFL (ENSCLAG00000006967) #28	CNOT2 (ENSCLAG00000014354) #29	KCNMB4 (ENSCLAG00000015315) #30	PTPRB (ENSCLAG00000005366) #31	PTPRR (ENSCLAG00000007361) #32	TSPAN8 (ENSCLAG00000006059) #34	LGR5 (ENSCLAG00000007212) #35	ZFC3H1 (ENSCLAG00000007646) #37	THAP2 (ENSCLAG00000013769)	ENSCLAG00000015447
Degu	DUPLICATION
Degu	MODERN SPECIES	88	HELB (ENSODEG00000004542)	GRIP1 (ENSODEG00000004813)	ENSODEG00000006471	CAND1 (ENSODEG00000006531) #7	ENSODEG00000019564	ENSODEG00000008629	DYRK2 (ENSODEG00000008824) #8	RAP1B (ENSODEG00000004031) #12	NUP107 (ENSODEG00000004100) #13	SLC35E3 (ENSODEG00000004570) #14	ENSODEG00000004028 #15	ENSODEG00000004291	ENSODEG00000004418 #17	ENSODEG00000004658 #21	LYZ (ENSODEG00000004742) ##21	ENSODEG00000005050 #22	ENSODEG00000005231	ENSODEG00000019177	FRS2 (ENSODEG00000004174) #23	LRRC10 (ENSODEG00000004356) #25	BEST3 (ENSODEG00000004391) #26	ENSODEG00000004175 #27	CNOT2 (ENSODEG00000004532) #29	KCNMB4 (ENSODEG00000004677) #30	ENSODEG00000004686	PTPRB (ENSODEG00000005212) #31	PTPRR (ENSODEG00000004892) #32	ENSODEG00000005914	LGR5 (ENSODEG00000005026) #35	ENSODEG00000005318	ENSODEG00000006640 #37
Degu	MODERN SPECIES	193				CYP7B1 (ENSODEG00000002114)	ENSODEG00000002090	ENSODEG00000002075	ENSODEG00000018832	YTHDF3 (ENSODEG00000002033)	ENSODEG00000001996	TTPA (ENSODEG00000001978)	GGH (ENSODEG00000001955)	ENSODEG00000001936	NKAIN3 (ENSODEG00000002570)	ENSODEG00000002514	ENSODEG00000002498	ENSODEG00000002474 #22	CLVS1 (ENSODEG00000002464)	CHD7 (ENSODEG00000002424)	ENSODEG00000002379	ENSODEG00000002369	ENSODEG00000002347	ENSODEG00000002330	CA8 (ENSODEG00000002318)	TOX (ENSODEG00000002296)
Hystricomorpha	ANCESTRAL SPECIES																	ENSGT00940000155811.h #22
Naked mole-rat female	MODERN SPECIES	8	ENSHGLG00000042026	ENSHGLG00000000992	RAP1B (ENSHGLG00000000978) #12	ENSHGLG00000037439	NUP107 (ENSHGLG00000000927) #13	ENSHGLG00000037749 #14	ENSHGLG00000041090	Mdm2 (ENSHGLG00000000856) #15	ENSHGLG00000000831 #16	ENSHGLG00000041415	ENSHGLG00000000792 #17	ENSHGLG00000036390	ENSHGLG00000032896	ENSHGLG00000000750	ENSHGLG00000000765 #21	YEATS4 (ENSHGLG00000005930) #22	ENSHGLG00000020270	FRS2 (ENSHGLG00000004690) #23	ENSHGLG00000008737 #24	ENSHGLG00000032589	BEST3 (ENSHGLG00000005639) #26	ENSHGLG00000033107	ENSHGLG00000015773 #27	ENSHGLG00000016095 #28	ENSHGLG00000012413	ENSHGLG00000008390 #15	ENSHGLG00000039489 #29	ENSHGLG00000004965 #30	PTPRB (ENSHGLG00000017872) #31	ENSHGLG00000035838	PTPRR (ENSHGLG00000005019) #32
Hystricomorpha_a	ANCESTRAL SPECIES																	ENSGT00940000155811.h #22
Hystricomorpha_b	ANCESTRAL SPECIES																	ENSGT00940000155811.h #22
Degu	MODERN SPECIES	69	ENSODEG00000009232	ABCC12 (ENSODEG00000010786)	PHKB (ENSODEG00000008822)	ITFG1 (ENSODEG00000007883)	ENSODEG00000008342	NETO2 (ENSODEG00000008553)	ENSODEG00000007831	GPT2 (ENSODEG00000008090)	HLTF (ENSODEG00000009415)	ENSODEG00000009053	CPA3 (ENSODEG00000008292)	CPB1 (ENSODEG00000011062)	AGTR1 (ENSODEG00000019590)	ENSODEG00000019589	ENSODEG00000013852	ENSODEG00000013165 #22	ENSODEG00000007847	ZIC1 (ENSODEG00000008223)	ZIC4 (ENSODEG00000008678)	PLSCR5 (ENSODEG00000009189)	ENSODEG00000009747	ENSODEG00000008158	PLSCR4 (ENSODEG00000009888)	PLOD2 (ENSODEG00000009443)	ENSODEG00000008324	ENSODEG00000008712	ENSODEG00000008615	DIPK2A (ENSODEG00000008791)	ENSODEG00000019572	ENSODEG00000010395	SLC9A9 (ENSODEG00000008259)
Lagomorpha	ANCESTRAL SPECIES	63	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.m.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.`b #21	ENSGT00940000155811 #22	ENSGT00740000115534.a.b.f.a.b	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	15	GRIP1 (ENSOCUG00000014011)	CAND1 (ENSOCUG00000005019) #7	ENSOCUG00000027591	DYRK2 (ENSOCUG00000009934) #8	ENSOCUG00000033173	IFNG (ENSOCUG00000024937) #9	IL26 (ENSOCUG00000000495)	IL22 (ENSOCUG00000001663) #10	MDM1 (ENSOCUG00000001665) #11	RAP1B (ENSOCUG00000032273) #12	NUP107 (ENSOCUG00000010886) #13	ENSOCUG00000010899 #15	ENSOCUG00000025851 #16	CPSF6 (ENSOCUG00000013505) #17	LYZ (ENSOCUG00000013891) #21	ENSOCUG00000011552 #22	ENSOCUG00000025240	FRS2 (ENSOCUG00000017192) #23	CCT2 (ENSOCUG00000017199) #24	ENSOCUG00000017216	ENSOCUG00000026016	BEST3 (ENSOCUG00000022219) #26	RAB3IP (ENSOCUG00000002977) #27	MYRFL (ENSOCUG00000002982) #28	CNOT2 (ENSOCUG00000009951) #29	KCNMB4 (ENSOCUG00000027941) #30	PTPRB (ENSOCUG00000012045) #31	PTPRR (ENSOCUG00000012065) #32	TSPAN8 (ENSOCUG00000025509) #34	LGR5 (ENSOCUG00000009203) #35	ZFC3H1 (ENSOCUG00000004591) #37
Rabbit	MODERN SPECIES	19	SMIM2 (ENSOCUG00000035641)	LACC1 (ENSOCUG00000016531)	CCDC122 (ENSOCUG00000015938)	ENSOCUG00000031598	ENSOCUG00000034735	ENOX1 (ENSOCUG00000006639)	DNAJC15 (ENSOCUG00000001696)	EPSTI1 (ENSOCUG00000000716)	TNFSF11 (ENSOCUG00000011051)	ENSOCUG00000006608	AKAP11 (ENSOCUG00000016016)	DGKH (ENSOCUG00000015981)	VWA8 (ENSOCUG00000014909)	ENSOCUG00000039664	ENSOCUG00000014903	ENSOCUG00000021190 #22	ENSOCUG00000032894	NAA16 (ENSOCUG00000013024)	MTRF1 (ENSOCUG00000025207)	ENSOCUG00000014016	WBP4 (ENSOCUG00000004256)	ELF1 (ENSOCUG00000010580)	ENSOCUG00000036807	CNMD (ENSOCUG00000005852)	PCDH8 (ENSOCUG00000008197)	ENSOCUG00000034427	ENSOCUG00000006349	ENSOCUG00000026932	ENSOCUG00000023238	ENSOCUG00000024464	PCDH17 (ENSOCUG00000005237)
Pika	MODERN SPECIES	5119															ENSOPRG00000003805 #21	ENSOPRG00000003815 #22
Tree shrew	MODERN SPECIES	1195																ENSTBEG00000001096 #22	ENSTBEG00000001243 ##21
Primates	ANCESTRAL SPECIES	6	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00740000115534.a.b.f.a.b	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088
Haplorrhini	ANCESTRAL SPECIES	3	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930.ab #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Simiiformes	ANCESTRAL SPECIES	4	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.q.b ##12	ENSGT01020000230346.A.cb.b	ENSGT00940000154429.r #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930.ab #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00550000076306	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088
Catarrhini	ANCESTRAL SPECIES	4	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.q.b ##12	ENSGT01020000230346.A.cb.b	ENSGT00940000154429.r #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00390000005532.e.b.d	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930.ab #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00910000147604	ENSGT00530000063626.b #28	ENSGT00550000076306	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37
Hominoidea	ANCESTRAL SPECIES	5	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00390000005532.e.b.d	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930.ab #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00910000147604	ENSGT00530000063626.b #28	ENSGT00550000076306	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000164887.b	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35
Hominidae	ANCESTRAL SPECIES	4	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00390000005532.e.b.d	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930.ab #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00910000147604	ENSGT00530000063626.b #28	ENSGT00550000076306	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000164887.b	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	5	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00390000005532.e.b.d	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930.ab #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00550000076306	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000164887.b	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37
Gorilla	MODERN SPECIES	3	IFNG (ENSGGOG00000006040) #9	IL26 (ENSGGOG00000011184)	IL22 (ENSGGOG00000008949) #10	MDM1 (ENSGGOG00000003147) #11	ENSGGOG00000041925	RAP1B (ENSGGOG00000025649) #12	ENSGGOG00000040194	NUP107 (ENSGGOG00000012583) #13	SLC35E3 (ENSGGOG00000012605) #14	ENSGGOG00000028239	ENSGGOG00000041194	MDM2 (ENSGGOG00000012907) #15	CPM (ENSGGOG00000001238) #16	CPSF6 (ENSGGOG00000008211) #17	LYZ (ENSGGOG00000011117) #21	YEATS4 (ENSGGOG00000027391) #22	ENSGGOG00000023917	FRS2 (ENSGGOG00000005279) #23	CCT2 (ENSGGOG00000006241) #24	LRRC10 (ENSGGOG00000026155) #25	BEST3 (ENSGGOG00000009266) #26	RAB3IP (ENSGGOG00000008395) #27	ENSGGOG00000044075	RPL17 (ENSGGOG00000040412)	MYRFL (ENSGGOG00000014863) #28	CNOT2 (ENSGGOG00000027402) #29	ENSGGOG00000023163	KCNMB4 (ENSGGOG00000012735) #30	PTPRB (ENSGGOG00000006298) #31	PTPRR (ENSGGOG00000014234) #32	ENSGGOG00000022233
Homo/Pan group	ANCESTRAL SPECIES	6	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00390000005532.e.b.d	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930.ab #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Pan	ANCESTRAL SPECIES	4	ENSGT01080000257336.b.e.b.a.b.a.e.b	ENSGT01080000257336.b.e.b.a.b.a.e.a	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT01020000230346.A.cb.b	ENSGT00950000183099.u.a.e.i.a.b	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00390000005532.e.b.d	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930.ab #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Chimpanzee	MODERN SPECIES	3	IFNG (ENSPTRG00000005193) #9	IL26 (ENSPTRG00000005194)	IL22 (ENSPTRG00000005195) #10	MDM1 (ENSPTRG00000005196) #11	ENSPTRG00000045123	ENSPTRG00000042763	RAP1B (ENSPTRG00000005197) #12	ENSPTRG00000044556	NUP107 (ENSPTRG00000005200) #13	SLC35E3 (ENSPTRG00000005201) #14	ENSPTRG00000044648	MDM2 (ENSPTRG00000005203) #15	CPM (ENSPTRG00000005204) #16	CPSF6 (ENSPTRG00000005205) #17	LYZ (ENSPTRG00000029654) #21	YEATS4 (ENSPTRG00000005206) #22	FRS2 (ENSPTRG00000005207) #23	CCT2 (ENSPTRG00000005210) #24	LRRC10 (ENSPTRG00000022651) #25	BEST3 (ENSPTRG00000005208) #26	RAB3IP (ENSPTRG00000005212) #27	MYRFL (ENSPTRG00000005215) #28	CNOT2 (ENSPTRG00000005216) #29	KCNMB4 (ENSPTRG00000049179) #30	PTPRB (ENSPTRG00000005219) #31	PTPRR (ENSPTRG00000005221) #32	ENSPTRG00000046131	TSPAN8 (ENSPTRG00000005222) #34	LGR5 (ENSPTRG00000005223) #35	ZFC3H1 (ENSPTRG00000005224) #37	THAP2 (ENSPTRG00000005225)
Bonobo	MODERN SPECIES	3	IFNG (ENSPPAG00000042020) #9	IL26 (ENSPPAG00000030617)	IL22 (ENSPPAG00000027135) #10	MDM1 (ENSPPAG00000031903) #11	ENSPPAG00000000159	ENSPPAG00000034222	ENSPPAG00000043670	RAP1B (ENSPPAG00000039946) #12	NUP107 (ENSPPAG00000030661) #13	SLC35E3 (ENSPPAG00000039610) #14	ENSPPAG00000029554	MDM2 (ENSPPAG00000032775) #15	CPM (ENSPPAG00000003532) #16	CPSF6 (ENSPPAG00000005301) #17	LYZ (ENSPPAG00000038937) #21	YEATS4 (ENSPPAG00000032289) #22	FRS2 (ENSPPAG00000028068) #23	CCT2 (ENSPPAG00000012594) #24	LRRC10 (ENSPPAG00000025591) #25	ENSPPAG00000034849 #26	RAB3IP (ENSPPAG00000038298) #27	MYRFL (ENSPPAG00000035407) #28	CNOT2 (ENSPPAG00000042482) #29	KCNMB4 (ENSPPAG00000036824) #30	PTPRB (ENSPPAG00000041412) #31	PTPRR (ENSPPAG00000040337) #32	ENSPPAG00000043785	TSPAN8 (ENSPPAG00000028556) #34	LGR5 (ENSPPAG00000034015) #35	ZFC3H1 (ENSPPAG00000029409) #37	THAP2 (ENSPPAG00000031711)
Human	MODERN SPECIES	3	HELB (ENSG00000127311)	GRIP1 (ENSG00000155974)	CAND1 (ENSG00000111530) #7	DYRK2 (ENSG00000127334) #8	IFNG (ENSG00000111537) #9	IL26 (ENSG00000111536)	IL22 (ENSG00000127318) #10	MDM1 (ENSG00000111554) #11	RAP1B (ENSG00000127314) #12	NUP107 (ENSG00000111581) #13	SLC35E3 (ENSG00000175782) #14	MDM2 (ENSG00000135679) #15	CPM (ENSG00000135678) #16	CPSF6 (ENSG00000111605) #17	LYZ (ENSG00000090382) #21	YEATS4 (ENSG00000127337) #22	FRS2 (ENSG00000166225) #23	CCT2 (ENSG00000166226) #24	LRRC10 (ENSG00000198812) #25	BEST3 (ENSG00000127325) #26	RAB3IP (ENSG00000127328) #27	MYRFL (ENSG00000166268) #28	CNOT2 (ENSG00000111596) #29	KCNMB4 (ENSG00000135643) #30	PTPRB (ENSG00000127329) #31	PTPRR (ENSG00000153233) #32	TSPAN8 (ENSG00000127324) #34	LGR5 (ENSG00000139292) #35	ZFC3H1 (ENSG00000133858) #37	THAP2 (ENSG00000173451)	TMEM19 (ENSG00000139291)
Orangutan	MODERN SPECIES	3	GRIP1 (ENSPPYG00000004743)	CAND1 (ENSPPYG00000004744) #7	DYRK2 (ENSPPYG00000004745) #8	IFNG (ENSPPYG00000004747) #9	IL26 (ENSPPYG00000004748)	IL22 (ENSPPYG00000004749) #10	MDM1 (ENSPPYG00000004750) #11	ENSPPYG00000040965	RAP1B (ENSPPYG00000004751) ##12	NUP107 (ENSPPYG00000004752) #13	SLC35E3 (ENSPPYG00000004753) #14	MDM2 (ENSPPYG00000004754) #15	CPM (ENSPPYG00000004755) #16	CPSF6 (ENSPPYG00000004756) #17	LYZ (ENSPPYG00000004757) #21	YEATS4 (ENSPPYG00000004758) #22	FRS2 (ENSPPYG00000004759) #23	CCT2 (ENSPPYG00000004760) #24	LRRC10 (ENSPPYG00000004761) #25	BEST3 (ENSPPYG00000004762) #26	RAB3IP (ENSPPYG00000004763) #27	ENSPPYG00000035976	MYRFL (ENSPPYG00000004764) #28	CNOT2 (ENSPPYG00000004765) #29	ENSPPYG00000034670 #30	PTPRB (ENSPPYG00000004768) #31	PTPRR (ENSPPYG00000004769) #32	ENSPPYG00000004770	ENSPPYG00000034183	TSPAN8 (ENSPPYG00000004771) #34	LGR5 (ENSPPYG00000004772) #35
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	18	ENSNLEG00000034852	PNISR (ENSNLEG00000013690)	COQ3 (ENSNLEG00000013664)	FAXC (ENSNLEG00000030205)	FBXL4 (ENSNLEG00000013629)	ENSNLEG00000027712	MMS22L (ENSNLEG00000013600)	KLHL32 (ENSNLEG00000013575)	NDUFAF4 (ENSNLEG00000013568)	GPR63 (ENSNLEG00000013561)	FHL5 (ENSNLEG00000013537)	UFL1 (ENSNLEG00000013481)	FUT9 (ENSNLEG00000033460)	MANEA (ENSNLEG00000013454)	ENSNLEG00000018642	ENSNLEG00000033141 #22	EPHA7 (ENSNLEG00000013448)	ENSNLEG00000032739	MAP3K7 (ENSNLEG00000013337)	BACH2 (ENSNLEG00000013316)	GJA10 (ENSNLEG00000018624)	CASP8AP2 (ENSNLEG00000013242)	MDN1 (ENSNLEG00000026737)	ENSNLEG00000030168	ANKRD6 (ENSNLEG00000013183)	RRAGD (ENSNLEG00000013157)	UBE2J1 (ENSNLEG00000013135)	GABRR2 (ENSNLEG00000013114)	GABRR1 (ENSNLEG00000013094)	SRSF12 (ENSNLEG00000032347)	ENSNLEG00000013085
Gibbon	MODERN SPECIES		DYRK2 (ENSNLEG00000034889) #8	IFNG (ENSNLEG00000003468) #9	IL26 (ENSNLEG00000003512)	IL22 (ENSNLEG00000003514) #10	MDM1 (ENSNLEG00000003541) #11	ENSNLEG00000028085	ENSNLEG00000027238	RAP1B (ENSNLEG00000027625) #12	NUP107 (ENSNLEG00000003633) #13	SLC35E3 (ENSNLEG00000003749) #14	ENSNLEG00000028628	MDM2 (ENSNLEG00000003757) #15	CPM (ENSNLEG00000003782) #16	CPSF6 (ENSNLEG00000003798) #17	LYZ (ENSNLEG00000003828) #21	ENSNLEG00000003837 #22	ENSNLEG00000027241	FRS2 (ENSNLEG00000003848) #23	CCT2 (ENSNLEG00000003862) #24	BEST3 (ENSNLEG00000003975) #26	RAB3IP (ENSNLEG00000003995) #27	ENSNLEG00000034872	MYRFL (ENSNLEG00000004048) #28	ENSNLEG00000004139	CNOT2 (ENSNLEG00000004064) #29	KCNMB4 (ENSNLEG00000034444) #30	PTPRB (ENSNLEG00000004145) #31	ENSNLEG00000027629	PTPRR (ENSNLEG00000004219) #32	TSPAN8 (ENSNLEG00000004299) #34	LGR5 (ENSNLEG00000004321) #35
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.q.b ##12	ENSGT01020000230346.A.cb.b	ENSGT00940000154429.r #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00390000005532.e.b.d	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930.ab #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00910000147604	ENSGT00530000063626.b #28	ENSGT00550000076306	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00390000005727.a.b.a.b.c.b.a	ENSGT00940000160214 #35
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.q.b ##12	ENSGT01020000230346.A.cb.b	ENSGT00940000154429.r #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930.ab #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00910000147604	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00390000005727.a.b.a.b.c.b.a	ENSGT00940000160214 #35	ENSGT00390000001116 #37
Vervet Monkey	MODERN SPECIES	2	HELB (ENSCSAG00000004375)	GRIP1 (ENSCSAG00000004360)	CAND1 (ENSCSAG00000004354) #7	DYRK2 (ENSCSAG00000004346) #8	IFNG (ENSCSAG00000004339) #9	IL26 (ENSCSAG00000004335)	IL22 (ENSCSAG00000004332) #10	MDM1 (ENSCSAG00000004322) #11	ENSCSAG00000004306 ##12	NUP107 (ENSCSAG00000004283) #13	SLC35E3 (ENSCSAG00000004248) #14	MDM2 (ENSCSAG00000004244) #15	CPM (ENSCSAG00000004238) #16	CPSF6 (ENSCSAG00000004232) #17	LYZ (ENSCSAG00000004225) #21	YEATS4 (ENSCSAG00000004221) #22	FRS2 (ENSCSAG00000004214) #23	CCT2 (ENSCSAG00000004209) #24	LRRC10 (ENSCSAG00000018905) #25	BEST3 (ENSCSAG00000004199) #26	RAB3IP (ENSCSAG00000004189) #27	ENSCSAG00000004183 #28	CNOT2 (ENSCSAG00000004177) #29	KCNMB4 (ENSCSAG00000004174) #30	PTPRB (ENSCSAG00000004172) #31	PTPRR (ENSCSAG00000004155) #32	TSPAN8 (ENSCSAG00000004135) #34	ENSCSAG00000004130	LGR5 (ENSCSAG00000004119) #35	ZFC3H1 (ENSCSAG00000004100) #37	THAP2 (ENSCSAG00000004092)
Cercopithecinae_a	ANCESTRAL SPECIES	7	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT01020000230346.A.cb.b	ENSGT00940000154429.r #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930.ab #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00910000147604	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00390000005727.a.b.b.cb	ENSGT00940000160214 #35	ENSGT00390000001116 #37
Macaca	ANCESTRAL SPECIES	6	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT01020000230346.A.cb.b	ENSGT00940000154429.r #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930.ab #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00910000147604	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00390000005727.a.b.b.cb	ENSGT00940000160214 #35	ENSGT00390000001116 #37
Pig-tailed macaque	MODERN SPECIES	517	GRIP1 (ENSMNEG00000032705)	CAND1 (ENSMNEG00000044036) #7	DYRK2 (ENSMNEG00000016585) #8	IFNG (ENSMNEG00000045091) #9	IL26 (ENSMNEG00000036262)	IL22 (ENSMNEG00000029661) #10	MDM1 (ENSMNEG00000034526) #11	ENSMNEG00000043917	RAP1B (ENSMNEG00000040911) #12	NUP107 (ENSMNEG00000043389) #13	SLC35E3 (ENSMNEG00000044092) #14	MDM2 (ENSMNEG00000041135) #15	CPM (ENSMNEG00000041295) #16	CPSF6 (ENSMNEG00000036311) #17	LYZ (ENSMNEG00000018096) #21	YEATS4 (ENSMNEG00000032273) #22	FRS2 (ENSMNEG00000035606) #23	CCT2 (ENSMNEG00000033246) #24	LRRC10 (ENSMNEG00000026349) #25	BEST3 (ENSMNEG00000021300) #26	RAB3IP (ENSMNEG00000038626) #27	ENSMNEG00000036729	MYRFL (ENSMNEG00000034008) #28	CNOT2 (ENSMNEG00000045426) #29	KCNMB4 (ENSMNEG00000039891) #30	PTPRB (ENSMNEG00000033910) #31	ENSMNEG00000030996	PTPRR (ENSMNEG00000031531) #32	TSPAN8 (ENSMNEG00000043021) #34	ENSMNEG00000005986	LGR5 (ENSMNEG00000043876) #35
Macaca_a	ANCESTRAL SPECIES	6	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.a.b.b.b.b.b.a.b	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930.ab #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00390000005727.a.b.b.cb	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088
Rhesus	MODERN SPECIES	2	ENSMMUG00000050629	IFNG (ENSMMUG00000056408) #9	IL26 (ENSMMUG00000004367)	IL22 (ENSMMUG00000018724) #10	MDM1 (ENSMMUG00000018725) #11	RAP1B (ENSMMUG00000011442) #12	NUP107 (ENSMMUG00000014186) #13	SLC35E3 (ENSMMUG00000014187) #14	ENSMMUG00000055511	ENSMMUG00000063920	MDM2 (ENSMMUG00000055447) #15	ENSMMUG00000057272	CPM (ENSMMUG00000000946) #16	CPSF6 (ENSMMUG00000002921) #17	LYZ (ENSMMUG00000008987) #21	YEATS4 (ENSMMUG00000046235) #22	FRS2 (ENSMMUG00000010819) #23	CCT2 (ENSMMUG00000010820) #24	LRRC10 (ENSMMUG00000054953) #25	BEST3 (ENSMMUG00000004786) #26	RAB3IP (ENSMMUG00000051498) #27	MYRFL (ENSMMUG00000006502) #28	ENSMMUG00000063999	CNOT2 (ENSMMUG00000014853) #29	KCNMB4 (ENSMMUG00000014858) #30	ENSMMUG00000051898	PTPRB (ENSMMUG00000011072) #31	PTPRR (ENSMMUG00000011075) #32	TSPAN8 (ENSMMUG00000006469) #34	ENSMMUG00000043982	LGR5 (ENSMMUG00000020942) #35
Crab-eating macaque	MODERN SPECIES	2	CAND1 (ENSMFAG00000044406) #7	DYRK2 (ENSMFAG00000032759) #8	ENSMFAG00000062980	IFNG (ENSMFAG00000053200) #9	IL26 (ENSMFAG00000033040)	IL22 (ENSMFAG00000037736) #10	MDM1 (ENSMFAG00000044312) #11	RAP1B (ENSMFAG00000046085) #12	NUP107 (ENSMFAG00000032446) #13	SLC35E3 (ENSMFAG00000004066) #14	ENSMFAG00000063430	MDM2 (ENSMFAG00000042359) #15	CPM (ENSMFAG00000040543) #16	ENSMFAG00000045318	LYZ (ENSMFAG00000054766) #21	YEATS4 (ENSMFAG00000041089) #22	ENSMFAG00000047735	ENSMFAG00000063180	FRS2 (ENSMFAG00000035837) #23	CCT2 (ENSMFAG00000035905) #24	BEST3 (ENSMFAG00000041620) #26	RAB3IP (ENSMFAG00000032638) #27	MYRFL (ENSMFAG00000002455) #28	CNOT2 (ENSMFAG00000034373) #29	KCNMB4 (ENSMFAG00000059465) #30	PTPRB (ENSMFAG00000001175) #31	PTPRR (ENSMFAG00000032342) #32	ENSMFAG00000003297	TSPAN8 (ENSMFAG00000038436) #34	ENSMFAG00000003390	LGR5 (ENSMFAG00000037729) #35
Cercopithecinae_b	ANCESTRAL SPECIES	2	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930.ab #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00910000147604	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00390000005727.a.b.b.cb	ENSGT00940000160214 #35	ENSGT00390000001116 #37
Olive baboon	MODERN SPECIES	19	DYRK2 (ENSPANG00000002678) #8	IFNG (ENSPANG00000043872) #9	IL26 (ENSPANG00000029556)	IL22 (ENSPANG00000000229) #10	MDM1 (ENSPANG00000024918) #11	RAP1B (ENSPANG00000012536) #12	NUP107 (ENSPANG00000019842) #13	SLC35E3 (ENSPANG00000009136) #14	MDM2 (ENSPANG00000005563) #15	CPM (ENSPANG00000015540) #16	ENSPANG00000040112	ENSPANG00000046634	CPSF6 (ENSPANG00000011641) #17	ENSPANG00000037535	LYZ (ENSPANG00000047975) #21	YEATS4 (ENSPANG00000024917) #22	ENSPANG00000043612	FRS2 (ENSPANG00000020396) #23	CCT2 (ENSPANG00000025711) #24	LRRC10 (ENSPANG00000011808) #25	BEST3 (ENSPANG00000012909) #26	RAB3IP (ENSPANG00000009135) #27	MYRFL (ENSPANG00000002677) #28	CNOT2 (ENSPANG00000018112) #29	ENSPANG00000044255 #30	PTPRB (ENSPANG00000003838) #31	PTPRR (ENSPANG00000009166) #32	TSPAN8 (ENSPANG00000009134) #34	ENSPANG00000041115	LGR5 (ENSPANG00000010802) #35	ZFC3H1 (ENSPANG00000009558) #37
Cercopithecinae_d	ANCESTRAL SPECIES	3	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930.ab #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00910000147604	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00390000005727.a.b.b.cb	ENSGT00940000160214 #35	ENSGT00390000001116 #37
Sooty mangabey	MODERN SPECIES	582													CPM (ENSCATG00000020552) #16	CPSF6 (ENSCATG00000039288) #17	LYZ (ENSCATG00000041254) #21	YEATS4 (ENSCATG00000035555) #22	FRS2 (ENSCATG00000037284) #23	CCT2 (ENSCATG00000042565) #24	LRRC10 (ENSCATG00000022620) #25	BEST3 (ENSCATG00000037527) #26	RAB3IP (ENSCATG00000025163) #27	ENSCATG00000022567	MYRFL (ENSCATG00000030779) #28	CNOT2 (ENSCATG00000036994) #29	KCNMB4 (ENSCATG00000026892) #30	PTPRB (ENSCATG00000033946) #31	PTPRR (ENSCATG00000040356) #32	ENSCATG00000032640	TSPAN8 (ENSCATG00000031127) #34	ENSCATG00000032435	LGR5 (ENSCATG00000039556) #35
Drill	MODERN SPECIES	596	HELB (ENSMLEG00000041967)	GRIP1 (ENSMLEG00000019755)	CAND1 (ENSMLEG00000043055) #7	DYRK2 (ENSMLEG00000036333) #8	IFNG (ENSMLEG00000035180) #9	IL26 (ENSMLEG00000033528)	IL22 (ENSMLEG00000040832) #10	MDM1 (ENSMLEG00000038274) #11	RAP1B (ENSMLEG00000037990) #12	NUP107 (ENSMLEG00000043509) #13	SLC35E3 (ENSMLEG00000038881) #14	MDM2 (ENSMLEG00000042099) #15	CPM (ENSMLEG00000034793) #16	CPSF6 (ENSMLEG00000003957) #17	LYZ (ENSMLEG00000030710) #21	YEATS4 (ENSMLEG00000029220) #22	FRS2 (ENSMLEG00000039875) #23	CCT2 (ENSMLEG00000033313) #24	LRRC10 (ENSMLEG00000018932) #25	BEST3 (ENSMLEG00000042920) #26	RAB3IP (ENSMLEG00000043075) #27	MYRFL (ENSMLEG00000028914) #28	CNOT2 (ENSMLEG00000041145) #29	KCNMB4 (ENSMLEG00000028341) #30	PTPRB (ENSMLEG00000041983) #31	PTPRR (ENSMLEG00000039163) #32	ENSMLEG00000029772
Rhinopithecus	ANCESTRAL SPECIES	130	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b.i	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT01020000230346.E.s.a	ENSGT00940000156243	ENSGT00940000154429.r #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00390000005532.e.b.d	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930.ab #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00550000076306	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00390000005727.a.b.a.b.c.b.a	ENSGT00940000160214 #35	ENSGT00390000001116 #37
Golden snub-nosed monkey	MODERN SPECIES	3304			IL26 (ENSRROG00000040267)	IL22 (ENSRROG00000031370) #10	MDM1 (ENSRROG00000031790) #11	ENSRROG00000042652	ENSRROG00000002729	RAP1B (ENSRROG00000030238) #12	NUP107 (ENSRROG00000040209) #13	SLC35E3 (ENSRROG00000043342) #14	ENSRROG00000041180	ENSRROG00000045589 #15	CPM (ENSRROG00000043552) #16	CPSF6 (ENSRROG00000042758) #17	LYZ (ENSRROG00000033846) #21	YEATS4 (ENSRROG00000037644) #22	FRS2 (ENSRROG00000040727) #23	CCT2 (ENSRROG00000028760) #24	LRRC10 (ENSRROG00000027186) #25	BEST3 (ENSRROG00000037058) #26	RAB3IP (ENSRROG00000030482) #27	MYRFL (ENSRROG00000043239) #28	ENSRROG00000029838	CNOT2 (ENSRROG00000042572) #29	KCNMB4 (ENSRROG00000035419) #30	PTPRB (ENSRROG00000010728) #31	ENSRROG00000035443 #32	ENSRROG00000028412 #32
Black snub-nosed monkey	MODERN SPECIES	1172														CPSF6 (ENSRBIG00000042827) #17	LYZ (ENSRBIG00000044030) #21	YEATS4 (ENSRBIG00000042546) #22	FRS2 (ENSRBIG00000038306) #23	CCT2 (ENSRBIG00000042534) #24	LRRC10 (ENSRBIG00000006257) #25	BEST3 (ENSRBIG00000039488) #26	RAB3IP (ENSRBIG00000039746) #27	MYRFL (ENSRBIG00000041540) #28	CNOT2 (ENSRBIG00000039989) #29	ENSRBIG00000028703
Platyrrhini	ANCESTRAL SPECIES	6	ENSGT00950000182837.b.a	ENSGT00940000155687	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726	ENSGT00940000163803	ENSGT00390000014843	ENSGT00940000162202.A	ENSGT00730000111596	ENSGT00940000162121	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930.ab #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00550000076306	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088
Cebidae	ANCESTRAL SPECIES	2	ENSGT00940000155606.b	ENSGT00950000182837.b.a	ENSGT00940000155687	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726	ENSGT00940000163803	ENSGT00390000014843	ENSGT00940000162202.A	ENSGT00730000111596	ENSGT00940000162121	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930.ab #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Cebidae_a	ANCESTRAL SPECIES	5	ENSGT00940000158666	ENSGT00940000155606.b	ENSGT00950000182837.b.a	ENSGT00940000155687	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726	ENSGT00390000014843	ENSGT00940000162202.A	ENSGT00730000111596	ENSGT00940000162121	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930.ab #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	67	TEX49 (ENSSBOG00000031888)	CCNT1 (ENSSBOG00000025980)	KANSL2 (ENSSBOG00000021002)	ENSSBOG00000025003	LALBA (ENSSBOG00000033801)	C12orf54 (ENSSBOG00000027705)	ENSSBOG00000031633	ZNF641 (ENSSBOG00000031895)	ENSSBOG00000026398	ENSSBOG00000022530 #15	CPM (ENSSBOG00000030586) #16	ENSSBOG00000024835	CPSF6 (ENSSBOG00000010652) #17	ENSSBOG00000014619	LYZ (ENSSBOG00000009999) #21	ENSSBOG00000034002 #22	FRS2 (ENSSBOG00000021639) #23	CCT2 (ENSSBOG00000035092) #24	BEST3 (ENSSBOG00000022085) #26	RAB3IP (ENSSBOG00000028522) #27	MYRFL (ENSSBOG00000025354) #28	CNOT2 (ENSSBOG00000026423) #29	KCNMB4 (ENSSBOG00000033502) #30	PTPRB (ENSSBOG00000033915) #31	PTPRR (ENSSBOG00000030410) #32	ENSSBOG00000027225	TSPAN8 (ENSSBOG00000034444) #34	LGR5 (ENSSBOG00000021612) #35	ZFC3H1 (ENSSBOG00000032676) #37	THAP2 (ENSSBOG00000025208)	TMEM19 (ENSSBOG00000020771)
Bolivian squirrel monkey	MODERN SPECIES	45	PDZK1IP1 (ENSSBOG00000033779)	ENSSBOG00000035852	NR2F2 (ENSSBOG00000020466)	MCTP2 (ENSSBOG00000029271)	RGMA (ENSSBOG00000023291)	CHD2 (ENSSBOG00000023754)	ENSSBOG00000033087	ENSSBOG00000000134	ST8SIA2 (ENSSBOG00000023341)	SLCO3A1 (ENSSBOG00000031641)	SV2B (ENSSBOG00000023396)	ENSSBOG00000022409	IQGAP1 (ENSSBOG00000023549)	CRTC3 (ENSSBOG00000012255)	BLM (ENSSBOG00000030957)	ENSSBOG00000019473 #22	FURIN (ENSSBOG00000025759)	FES (ENSSBOG00000030210)	MAN2A2 (ENSSBOG00000024100)	ENSSBOG00000017661	HDDC3 (ENSSBOG00000035028)	UNC45A (ENSSBOG00000030766)	ENSSBOG00000011485	RCCD1 (ENSSBOG00000030496)	VPS33B (ENSSBOG00000015264)	NGRN (ENSSBOG00000029844)	TTLL13 (ENSSBOG00000030893)	CIB1 (ENSSBOG00000008160)	SEMA4B (ENSSBOG00000028869)	IDH2 (ENSSBOG00000021665)	ZNF710 (ENSSBOG00000031952)
Capuchin	MODERN SPECIES	414													ENSCCAG00000026296	CPSF6 (ENSCCAG00000028149) #17	LYZ (ENSCCAG00000033773) #21	YEATS4 (ENSCCAG00000037529) #22	ENSCCAG00000037053 #23	ENSCCAG00000017394 #23	ENSCCAG00000029917 #24	LRRC10 (ENSCCAG00000020166) #25	BEST3 (ENSCCAG00000028652) #26	RAB3IP (ENSCCAG00000030380) #27	MYRFL (ENSCCAG00000024094) #28	ENSCCAG00000027669	CNOT2 (ENSCCAG00000033920) #29	KCNMB4 (ENSCCAG00000023050) #30	PTPRB (ENSCCAG00000028646) #31	PTPRR (ENSCCAG00000020544) #32
Marmoset	MODERN SPECIES	21	RND1 (ENSCJAG00000051836)	DDX23 (ENSCJAG00000020775)	CACNB3 (ENSCJAG00000020762)	ADCY6 (ENSCJAG00000020756)	TEX49 (ENSCJAG00000041983)	CCNT1 (ENSCJAG00000020739)	KANSL2 (ENSCJAG00000020735)	LALBA (ENSCJAG00000020732)	OR5BS1P (ENSCJAG00000060436)	C12orf54 (ENSCJAG00000020725)	ZNF641 (ENSCJAG00000082757)	ENSCJAG00000070721	ENSCJAG00000074436 #15	CPM (ENSCJAG00000001828) #16	CPSF6 (ENSCJAG00000001798) #17	LYZ (ENSCJAG00000001779) #22	ENSCJAG00000071407	FRS2 (ENSCJAG00000001774) #23	ENSCJAG00000076987	CCT2 (ENSCJAG00000001715) #24	LRRC10 (ENSCJAG00000044346) #25	ENSCJAG00000085267	ENSCJAG00000072351	BEST3 (ENSCJAG00000001684) #26	RAB3IP (ENSCJAG00000001641) #27	MYRFL (ENSCJAG00000037154) #28	CNOT2 (ENSCJAG00000001567) #29	KCNMB4 (ENSCJAG00000082877) #30	PTPRB (ENSCJAG00000001515) #31	PTPRR (ENSCJAG00000001472) #32	TSPAN8 (ENSCJAG00000001462) #34
Mas night monkey	MODERN SPECIES	1029	CCDC65 (ENSANAG00000025259)	RND1 (ENSANAG00000032196)	DDX23 (ENSANAG00000018663)	CACNB3 (ENSANAG00000023621)	ADCY6 (ENSANAG00000030000)	TEX49 (ENSANAG00000024703)	CCNT1 (ENSANAG00000019549)	KANSL2 (ENSANAG00000029846)	LALBA (ENSANAG00000027355)	C12orf54 (ENSANAG00000035791)	ZNF641 (ENSANAG00000036405)	ENSANAG00000038209 #15	CPM (ENSANAG00000038366) #16	CPSF6 (ENSANAG00000019240) #17	LYZ (ENSANAG00000019339) #21	YEATS4 (ENSANAG00000032795) #22	ENSANAG00000033517	FRS2 (ENSANAG00000029507) #23	CCT2 (ENSANAG00000026639) #24	BEST3 (ENSANAG00000017939) #26	RAB3IP (ENSANAG00000026618) #27	MYRFL (ENSANAG00000024461) #28	ENSANAG00000038254	CNOT2 (ENSANAG00000024330) #29	ENSANAG00000035381 #30	PTPRB (ENSANAG00000033249) #31	ENSANAG00000033231 #32	PTPRR (ENSANAG00000032097) #32	TSPAN8 (ENSANAG00000030222) #34	LGR5 (ENSANAG00000005420) #35	ZFC3H1 (ENSANAG00000038329) #37
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	5938									PIM3 (ENSTSYG00000032442)	ENSTSYG00000003135	ENSTSYG00000035774	ENSTSYG00000036692	CPM (ENSTSYG00000002934) #16	CPSF6 (ENSTSYG00000008591) #17	LYZ (ENSTSYG00000012468) #21	YEATS4 (ENSTSYG00000012469) #22	FRS2 (ENSTSYG00000035362) #23	CCT2 (ENSTSYG00000011458) #24	ENSTSYG00000033989	BEST3 (ENSTSYG00000006780) #26	RAB3IP (ENSTSYG00000006842) #27	MYRFL (ENSTSYG00000005162) #28	CNOT2 (ENSTSYG00000012927) #29	KCNMB4 (ENSTSYG00000030945) #30	PTPRB (ENSTSYG00000002140) #31	ENSTSYG00000001998 #32
Tarsier	MODERN SPECIES	6643																ENSTSYG00000028212 #22	PTGDR (ENSTSYG00000004655)	NID2 (ENSTSYG00000004535)	RTRAF (ENSTSYG00000004528)	GNG2 (ENSTSYG00000033998)	FRMD6 (ENSTSYG00000009135)
Strepsirrhini	ANCESTRAL SPECIES	3	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r.g #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.`b.a #15	ENSGT00940000158580 #16	ENSGT00730000110905.b.g #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930.z #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Lemuriformes	ANCESTRAL SPECIES	1	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r.g #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.ab.a.a #15	ENSGT00530000063539.b.`b.a #15	ENSGT00940000158580 #16	ENSGT00730000110905.b.g #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930.z #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Mouse lemur	MODERN SPECIES	29	ENSMICG00000032781	B4GALNT3 (ENSMICG00000007939)	CCDC77 (ENSMICG00000030562)	KDM5A (ENSMICG00000007891)	SLC6A12 (ENSMICG00000007883)	IQSEC3 (ENSMICG00000015691)	ENSMICG00000047373	CNTN1 (ENSMICG00000012376)	LRRK2 (ENSMICG00000012466)	SLC2A13 (ENSMICG00000034052)	ENSMICG00000029037 #15	ENSMICG00000041864 #15	CPM (ENSMICG00000043668) #16	CPSF6 (ENSMICG00000007385) #17	LYZ (ENSMICG00000047192) #21	YEATS4 (ENSMICG00000002467) #22	ENSMICG00000042218	FRS2 (ENSMICG00000011467) #23	CCT2 (ENSMICG00000011477) #24	ENSMICG00000037899	BEST3 (ENSMICG00000011493) #26	RAB3IP (ENSMICG00000004622) #27	MYRFL (ENSMICG00000004632) #28	CNOT2 (ENSMICG00000001644) #29	KCNMB4 (ENSMICG00000044565) #30	PTPRB (ENSMICG00000007260) #31	PTPRR (ENSMICG00000007280) #32	TSPAN8 (ENSMICG00000032193) #34	LGR5 (ENSMICG00000009125) #35	ZFC3H1 (ENSMICG00000009137) #37	TMEM19 (ENSMICG00000047949)
Lemuriformes_a	ANCESTRAL SPECIES	27	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.r.g #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.ab.a.a #15	ENSGT00940000158580 #16	ENSGT00730000110905.b.g #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930.z #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Coquerels sifaka	MODERN SPECIES	242	CAND1 (ENSPCOG00000015713) #7	ENSPCOG00000019569	ENSPCOG00000007263	DYRK2 (ENSPCOG00000023070) #8	IFNG (ENSPCOG00000022368) #9	IL26 (ENSPCOG00000023309)	IL22 (ENSPCOG00000025490) #10	MDM1 (ENSPCOG00000027405) #11	ENSPCOG00000012607 #12	ENSPCOG00000022158 #13	SLC35E3 (ENSPCOG00000028864) #14	ENSPCOG00000026718	CPM (ENSPCOG00000003564) #16	CPSF6 (ENSPCOG00000024384) #17	LYZ (ENSPCOG00000010615) #21	YEATS4 (ENSPCOG00000016921) #22	FRS2 (ENSPCOG00000021506) #23	CCT2 (ENSPCOG00000014447) #24	BEST3 (ENSPCOG00000026286) #26	RAB3IP (ENSPCOG00000008504) #27	MYRFL (ENSPCOG00000025063) #28	ENSPCOG00000018009	CNOT2 (ENSPCOG00000028865) #29	KCNMB4 (ENSPCOG00000019491) #30	PTPRB (ENSPCOG00000028533) #31	PTPRR (ENSPCOG00000016322) #32	TSPAN8 (ENSPCOG00000022084) #34	LGR5 (ENSPCOG00000016048) #35	ZFC3H1 (ENSPCOG00000019879) #37	THAP2 (ENSPCOG00000015817)	TMEM19 (ENSPCOG00000022341)
Greater bamboo lemur	MODERN SPECIES	873	ENSPSMG00000001937 #7	DYRK2 (ENSPSMG00000001942) #8	IFNG (ENSPSMG00000001959) #9	IL26 (ENSPSMG00000001967)	IL22 (ENSPSMG00000001981) #10	MDM1 (ENSPSMG00000002086) #11	RAP1B (ENSPSMG00000002325) #12	NUP107 (ENSPSMG00000002791) #13	SLC35E3 (ENSPSMG00000003036) #14	ENSPSMG00000003043	MDM2 (ENSPSMG00000003389) #15	CPM (ENSPSMG00000003940) #16	ENSPSMG00000003948	CPSF6 (ENSPSMG00000004017) #17	LYZ (ENSPSMG00000004084) #21	YEATS4 (ENSPSMG00000004127) #22	FRS2 (ENSPSMG00000004143) #23	ENSPSMG00000004153	CCT2 (ENSPSMG00000004315) #24	LRRC10 (ENSPSMG00000004380) #25	BEST3 (ENSPSMG00000004408) #26	RAB3IP (ENSPSMG00000004512) #27	MYRFL (ENSPSMG00000004559) #28	CNOT2 (ENSPSMG00000004665) #29	KCNMB4 (ENSPSMG00000004719) #30	PTPRB (ENSPSMG00000005064) #31	PTPRR (ENSPSMG00000005364) #32	TSPAN8 (ENSPSMG00000005479) #34	LGR5 (ENSPSMG00000005539) #35	ZFC3H1 (ENSPSMG00000005584) #37	THAP2 (ENSPSMG00000005596)
Bushbaby	MODERN SPECIES	240	TNMD (ENSOGAG00000003747)	PCDH19 (ENSOGAG00000028258)	DYRK2 (ENSOGAG00000027781) #8	IFNG (ENSOGAG00000004299) #9	IL26 (ENSOGAG00000027038)	IL22 (ENSOGAG00000004312) #10	MDM1 (ENSOGAG00000004314) #11	ENSOGAG00000005746 #12	NUP107 (ENSOGAG00000002661) #13	SLC35E3 (ENSOGAG00000002668) #14	ENSOGAG00000034779 #15	CPM (ENSOGAG00000008903) #16	ENSOGAG00000032325	CPSF6 (ENSOGAG00000031988) #17	LYZ (ENSOGAG00000005260) #21	YEATS4 (ENSOGAG00000008222) #22	FRS2 (ENSOGAG00000002307) #23	ENSOGAG00000002308 #24	LRRC10 (ENSOGAG00000002310) #25	BEST3 (ENSOGAG00000002311) #26	RAB3IP (ENSOGAG00000008725) #27	MYRFL (ENSOGAG00000028145) #28
Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT00940000158692	ENSGT00390000017740.b ##7	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT00390000017740.b ##7	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.a #21	ENSGT00940000153832.f.x.b #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT00390000017740.b ##7	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.a #21	ENSGT00940000153832.f.x.b #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Suina	ANCESTRAL SPECIES	4	ENSGT00940000158692	ENSGT00390000017740.b ##7	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.y #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Chacoan peccary	MODERN SPECIES	871	C22orf23 (ENSCWAG00000017199)	MICALL1 (ENSCWAG00000017286)	CCDC91 (ENSCWAG00000017322)	PTHLH (ENSCWAG00000017448)	KLHL42 (ENSCWAG00000017485)	MANSC4 (ENSCWAG00000017516)	MRPS35 (ENSCWAG00000017542)	REP15 (ENSCWAG00000017672)	PPFIBP1 (ENSCWAG00000017704)	ENSCWAG00000017883	SMCO2 (ENSCWAG00000017929)	MDM2 (ENSCWAG00000018051) #15	CPM (ENSCWAG00000018327) #16	CPSF6 (ENSCWAG00000018386) #17	LYZ (ENSCWAG00000018503) #21	YEATS4 (ENSCWAG00000018561) #22	FRS2 (ENSCWAG00000018605) #23	CCT2 (ENSCWAG00000018643) #24	LRRC10 (ENSCWAG00000018702) #25	BEST3 (ENSCWAG00000018726) #26	ENSCWAG00000018800 #26	RAB3IP (ENSCWAG00000018834) #27	MYRFL (ENSCWAG00000018957) #28	CNOT2 (ENSCWAG00000019248) #29	KCNMB4 (ENSCWAG00000019310) #30	PTPRB (ENSCWAG00000019502) #31	PTPRR (ENSCWAG00000003814) #32	TSPAN8 (ENSCWAG00000004055) #34	LGR5 (ENSCWAG00000004175) #35	ZFC3H1 (ENSCWAG00000004743) #37	THAP2 (ENSCWAG00000004903)
Pig	MODERN SPECIES	13	DYRK2 (ENSSSCG00000000958) #8	IFNG (ENSSSCG00000032963) #9	IL26 (ENSSSCG00000062169)	IL22 (ENSSSCG00000000482) #10	ENSSSCG00000050470	MDM1 (ENSSSCG00000000483) #11	ENSSSCG00000062576	RAP1B (ENSSSCG00000032595) #12	NUP107 (ENSSSCG00000000486) #13	SLC35E3 (ENSSSCG00000000487) #14	MDM2 (ENSSSCG00000000488) #15	ENSSSCG00000035404	CPM (ENSSSCG00000023630) #16	CPSF6 (ENSSSCG00000038031) #17	LYZ (ENSSSCG00000000492) #21	YEATS4 (ENSSSCG00000037845) #22	FRS2 (ENSSSCG00000000493) #23	CCT2 (ENSSSCG00000000496) #24	LRRC10 (ENSSSCG00000036760) #25	BEST3 (ENSSSCG00000000499) #26	RAB3IP (ENSSSCG00000000500) #27	ENSSSCG00000044473	MYRFL (ENSSSCG00000023936) #28	CNOT2 (ENSSSCG00000000502) #29	KCNMB4 (ENSSSCG00000031173) #30	PTPRB (ENSSSCG00000000504) #31	PTPRR (ENSSSCG00000025969) #32	ENSSSCG00000059689	TSPAN8 (ENSSSCG00000055572) #34	LGR5 (ENSSSCG00000030511) #35	ZFC3H1 (ENSSSCG00000000509) #37
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.a #21	ENSGT00940000153832.f.x.b #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Camelidae	ANCESTRAL SPECIES	39															ENSGT00940000153832.f.y.a #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Alpaca	MODERN SPECIES	3103															ENSVPAG00000009247 #21	YEATS4 (ENSVPAG00000009248) #22
Arabian camel	MODERN SPECIES	3	RBFOX2 (ENSCDRG00005020273)	ENSCDRG00005020253	MB (ENSCDRG00005020248)	RASD2 (ENSCDRG00005020242)	MCM5 (ENSCDRG00005020220)	HMOX1 (ENSCDRG00005020203)	TOM1 (ENSCDRG00005020168)	HMGXB4 (ENSCDRG00005020131)	ISX (ENSCDRG00005020112)	LARGE1 (ENSCDRG00005020049)	ENSCDRG00005020027	ENSCDRG00005020017	ENSCDRG00005020007	ENSCDRG00005019999	ENSCDRG00005019957 #21	YEATS4 (ENSCDRG00005019927) #22	FRS2 (ENSCDRG00005019911) #23	CCT2 (ENSCDRG00005019882) #24	LRRC10 (ENSCDRG00005019874) #25	BEST3 (ENSCDRG00005019835) #26	RAB3IP (ENSCDRG00005019663) #27	MYRFL (ENSCDRG00005019536) #28	CNOT2 (ENSCDRG00005019457) #29	KCNMB4 (ENSCDRG00005019441) #30	PTPRB (ENSCDRG00005018779) #31	PTPRR (ENSCDRG00005018422) #32	TSPAN8 (ENSCDRG00005018351) #34	LGR5 (ENSCDRG00005018226) #35	ZFC3H1 (ENSCDRG00005017941) #37	THAP2 (ENSCDRG00005017863)	TMEM19 (ENSCDRG00005017823)
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.a #21	ENSGT00940000153832.f.x.b #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Pecora	ANCESTRAL SPECIES	3	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.y.c #21	ENSGT00940000153832.f.y.d.a.b #21	ENSGT00940000153832.f.y.d.a.a #21	ENSGT00940000153832.f.x.b.a #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000159679	ENSGT00940000155323.a	ENSGT00950000182955.a.b.b	ENSGT00390000002848	ENSGT00940000155870.b
Yarkand deer	MODERN SPECIES	22	DYRK2 (ENSCHYG00000002782) #8	IFNG (ENSCHYG00000002762) #9	IL26 (ENSCHYG00000002748)	IL22 (ENSCHYG00000002734) #10	MDM1 (ENSCHYG00000002669) #11	ENSCHYG00000002648	RAP1B (ENSCHYG00000002556) #12	NUP107 (ENSCHYG00000002314) #13	MDM2 (ENSCHYG00000002030) #15	CPM (ENSCHYG00000001921) #16	CPSF6 (ENSCHYG00000001808) #17	ENSCHYG00000001761 #21	ENSCHYG00000001751 #21	ENSCHYG00000001663 #21	ENSCHYG00000001489 #21	YEATS4 (ENSCHYG00000001446) #22	FRS2 (ENSCHYG00000001414) #23	CCT2 (ENSCHYG00000001369) #24	LRRC10 (ENSCHYG00000001349) #25	BEST3 (ENSCHYG00000001316) #26	RAB3IP (ENSCHYG00000001137) #27	MYRFL (ENSCHYG00000000962) #28	CNOT2 (ENSCHYG00000000903) #29	KCNMB4 (ENSCHYG00000000883) #30	PTPRB (ENSCHYG00000000385) #31	PTPRR (ENSCHYG00000000166) #32	CPNE8 (ENSCHYG00000000063)	KIF21A (ENSCHYG00000019430)	ABCD2 (ENSCHYG00000019036)	C12orf40 (ENSCHYG00000018928)	ENSCHYG00000018841
Percora_a	ANCESTRAL SPECIES	3	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.y.c #21	ENSGT00940000153832.f.y.d.a.b #21	ENSGT00940000153832.f.y.d.a.a #21	ENSGT00940000153832.f.x.b.a #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000159679	ENSGT00940000155323.a	ENSGT00950000182955.a.b.b	ENSGT00390000002848	ENSGT00940000155870.b
Bovidae	ANCESTRAL SPECIES	3	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.a #21	ENSGT00940000153832.f.y.d.b.b #21	ENSGT00940000153832.f.y.d.b.a.a #21	ENSGT00940000153832.f.y.d.b.a.b #21	ENSGT00940000153832.f.y.d.a.b #21	ENSGT00940000153832.f.x.b.b #21	ENSGT00940000153832.f.y.d.a.a #21	ENSGT00940000153832.f.x.b.a #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000159679	ENSGT00940000155323.a	ENSGT00550000074846.`b	ENSGT00950000182955.a.b.b	ENSGT00390000002848
Caprinae	ANCESTRAL SPECIES		ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.a #21	ENSGT00940000153832.f.y.d.b.b #21	ENSGT00940000153832.f.y.d.b.a.a #21	ENSGT00940000153832.f.y.d.b.a.b.d #21	ENSGT00940000153832.f.y.d.b.a.b.c #21	ENSGT00940000153832.f.y.d.a.b #21	ENSGT00940000153832.f.x.b.b #21	ENSGT00940000153832.f.y.d.a.a #21	ENSGT00940000153832.f.x.b.a #21	ENSGT00940000155811 #22	ENSGT00550000074956.x	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000159679	ENSGT00940000155323.a	ENSGT00550000074846.`b	ENSGT00950000182955.a.b.b
Rambouillet Sheep	MODERN SPECIES	19	RAP1B (ENSOARG00020004962) #12	NUP107 (ENSOARG00020004416) #13	SLC35E3 (ENSOARG00020004371) #14	ENSOARG00020003436 #15	CPM (ENSOARG00020003311) #16	ENSOARG00020003292	CPSF6 (ENSOARG00020003127) #17	ENSOARG00020003071 #21	ENSOARG00020003015 #21	ENSOARG00020002988 #21	ENSOARG00020002977 #21	ENSOARG00020002967 #21	ENSOARG00020002945 #21	ENSOARG00020002929 #21	ENSOARG00020002919 #21	YEATS4 (ENSOARG00020002909) #22	ENSOARG00020002901	FRS2 (ENSOARG00020002887) #23	ENSOARG00020002871 #24	LRRC10 (ENSOARG00020002858) #25	BEST3 (ENSOARG00020002837) #26	RAB3IP (ENSOARG00020002771) #27	MYRFL (ENSOARG00020002696) #28	CNOT2 (ENSOARG00020002634) #29	ENSOARG00020002614 ##15	KCNMB4 (ENSOARG00020002606) #30	PTPRR (ENSOARG00020002362) #32	CPNE8 (ENSOARG00020002297)	ENSOARG00020002235	ENSOARG00020001418	ABCD2 (ENSOARG00020001262)
Goat	MODERN SPECIES	24	RAP1B (ENSCHIG00000026537) #12	NUP107 (ENSCHIG00000026859) #13	SLC35E3 (ENSCHIG00000013311) #14	MDM2 (ENSCHIG00000019939) #15	CPM (ENSCHIG00000025514) #16	CPSF6 (ENSCHIG00000010792) #17	S-LZ (ENSCHIG00000017178) #21	ENSCHIG00000020710 #21	ENSCHIG00000022881 #21	ENSCHIG00000004867 #21	ENSCHIG00000010988 #21	ENSCHIG00000006608 #21	ENSCHIG00000022325 #21	ENSCHIG00000024463 #21	ENSCHIG00000027096 #21	YEATS4 (ENSCHIG00000014331) #22	ENSCHIG00000020882	ENSCHIG00000020628	FRS2 (ENSCHIG00000010794) #23	CCT2 (ENSCHIG00000025742) #24	LRRC10 (ENSCHIG00000004871) #25	BEST3 (ENSCHIG00000016253) #26	RAB3IP (ENSCHIG00000010199) #27	MYRFL (ENSCHIG00000011630) #28	CNOT2 (ENSCHIG00000021610) #29	ENSCHIG00000027135 ##15	KCNMB4 (ENSCHIG00000008910) #30	PTPRB (ENSCHIG00000018145) #31	PTPRR (ENSCHIG00000022880) #32	CPNE8 (ENSCHIG00000026435)	KIF21A (ENSCHIG00000025333)
Bovinae	ANCESTRAL SPECIES	17	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.a #21	ENSGT00940000153832.f.y.d.b.b #21	ENSGT00940000153832.f.y.d.b.a.b.a #21	ENSGT00940000153832.f.y.d.b.a.a #21	ENSGT00940000153832.f.y.d.b.a.b.b #21	ENSGT00940000153832.f.y.d.a.b #21	ENSGT00940000153832.f.x.b.b #21	ENSGT00940000153832.f.y.d.a.a.a.b #21	ENSGT00940000153832.f.y.d.a.a.a.a #21	ENSGT00940000153832.f.y.d.a.a.b #21	ENSGT00940000153832.f.x.b.a #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00530000063539.a.v ##15	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000159679	ENSGT00940000153112.D.c.a	ENSGT00940000155323.a	ENSGT00550000074846.`b
Bos	ANCESTRAL SPECIES	2	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.a #21	ENSGT00940000153832.f.y.d.b.b #21	ENSGT00940000153832.f.y.d.b.a.b.a #21	ENSGT00940000153832.f.y.d.b.a.a #21	ENSGT00940000153832.f.y.d.b.a.b.b #21	ENSGT00940000153832.f.y.d.a.b #21	ENSGT00940000153832.f.x.b.b #21	ENSGT00940000153832.f.y.d.a.a.a.a #21	ENSGT00940000153832.f.y.d.a.a.b #21	ENSGT00940000153832.f.x.b.a #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00530000063539.a.v ##15	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000159679	ENSGT00940000153112.D.c.a	ENSGT00940000155323.a	ENSGT00550000074846.`b
Bos_a	ANCESTRAL SPECIES	3	ENSGT00390000004106 #11	ENSGT00940000154429.v #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.a #21	ENSGT00940000153832.f.y.d.b.b #21	ENSGT00940000153832.f.y.d.b.a.b.a #21	ENSGT00940000153832.f.y.d.b.a.a #21	ENSGT00940000153832.f.y.d.b.a.b.b #21	ENSGT00940000153832.f.y.d.a.b #21	ENSGT00940000153832.f.y.d.a.a.b #21	ENSGT00940000153832.f.x.b.a #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00530000063539.a.v ##15	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000159679	ENSGT00940000153298.m.a	ENSGT00940000155323.a	ENSGT00550000074846.`b
Wild yak	MODERN SPECIES	1252															ENSBMUG00000018443 #21	YEATS4 (ENSBMUG00000018483) #22	FRS2 (ENSBMUG00000018516) #23	CCT2 (ENSBMUG00000018574) #24	LRRC10 (ENSBMUG00000018608) #25	BEST3 (ENSBMUG00000018649) #26	RAB3IP (ENSBMUG00000018726) #27	MYRFL (ENSBMUG00000018768) #28
Domestic yak	MODERN SPECIES	24	RAP1B (ENSBGRG00000021221) #12	NUP107 (ENSBGRG00000021761) #13	ENSBGRG00000022075	MDM2 (ENSBGRG00000022145) #15	CPM (ENSBGRG00000022902) #16	ENSBGRG00000022992	CPSF6 (ENSBGRG00000023026) #17	ENSBGRG00000023194 #21	ENSBGRG00000023254 #21	ENSBGRG00000023317 #21	ENSBGRG00000023368 #21	ENSBGRG00000023386 #21	ENSBGRG00000023408 #21	ENSBGRG00000023471 #21	ENSBGRG00000007422 #21	YEATS4 (ENSBGRG00000007500) #22	FRS2 (ENSBGRG00000007705) #23	CCT2 (ENSBGRG00000007901) #24	LRRC10 (ENSBGRG00000008156) #25	ENSBGRG00000008385 #26	RAB3IP (ENSBGRG00000008446) #27	MYRFL (ENSBGRG00000008765) #28	CNOT2 (ENSBGRG00000009161) #29	KCNMB4 (ENSBGRG00000009357) #30	PTPRB (ENSBGRG00000009450) #31	PTPRR (ENSBGRG00000011534) #32	CPNE8 (ENSBGRG00000012044)	ENSBGRG00000012374	KIF21A (ENSBGRG00000012509)	ABCD2 (ENSBGRG00000014998)	C12orf40 (ENSBGRG00000015186)
Bos_b	ANCESTRAL SPECIES	4	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.mb #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.a #21	ENSGT00940000153832.f.y.d.b.b #21	ENSGT00940000153832.f.y.d.b.a.b.a #21	ENSGT00940000153832.f.y.d.b.a.a #21	ENSGT00940000153832.f.y.d.b.a.b.b #21	ENSGT00940000153832.f.y.d.a.b #21	ENSGT00940000153832.f.x.b.b #21	ENSGT00940000153832.f.y.d.a.a.a.a.a #21	ENSGT00940000153832.f.y.d.a.a.b #21	ENSGT00940000153832.f.x.b.a #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00530000063539.a.v ##15	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000159679	ENSGT00940000153112.D.c.a	ENSGT00940000155323.a	ENSGT00950000182955.a.b.b
Cow	MODERN SPECIES	24	ENSBTAG00000002741	CPSF6 (ENSBTAG00000007323) #17	LYZ (ENSBTAG00000026779) #21	ENSBTAG00000026322 #21	LYZ3 (ENSBTAG00000046628) #21	LYZ1 (ENSBTAG00000046511) #21	LYZ2 (ENSBTAG00000026088) #21	LYSB (ENSBTAG00000026323) #21	ENSBTAG00000039170 #21	ENSBTAG00000000198 #21	ENSBTAG00000054492 #21	ENSBTAG00000020564 #21	ENSBTAG00000049929 #21	ENSBTAG00000022971 #21	LYZ1 (ENSBTAG00000011941) #21	YEATS4 (ENSBTAG00000002256) #22	FRS2 (ENSBTAG00000019155) #23	CCT2 (ENSBTAG00000019156) #24	LRRC10 (ENSBTAG00000019157) #25	BEST3 (ENSBTAG00000002931) #26	RAB3IP (ENSBTAG00000031950) #27	MYRFL (ENSBTAG00000014829) #28	CNOT2 (ENSBTAG00000003748) #29	ENSBTAG00000054094 ##15	KCNMB4 (ENSBTAG00000003749) #30	PTPRB (ENSBTAG00000015296) #31	PTPRR (ENSBTAG00000015311) #32	CPNE8 (ENSBTAG00000020914)	ENSBTAG00000048924	KIF21A (ENSBTAG00000004832)	ABCD2 (ENSBTAG00000038043)
Hybrid Bos Indicus	MODERN SPECIES	24	IL22 (ENSBIXG00005008694) #10	MDM1 (ENSBIXG00005005356) #11	ENSBIXG00005008561 #12	NUP107 (ENSBIXG00005008410) #13	MDM2 (ENSBIXG00005000171) #15	CPM (ENSBIXG00005008267) #16	ENSBIXG00005008249	CPSF6 (ENSBIXG00005029224) #17	ENSBIXG00005029168 #21	ENSBIXG00005001810 #21	ENSBIXG00005005135 #21	ENSBIXG00005028990 #21	ENSBIXG00005028947 #21	ENSBIXG00005028942 #21	ENSBIXG00005002226 #21	YEATS4 (ENSBIXG00005028893) #22	FRS2 (ENSBIXG00005028857) #23	CCT2 (ENSBIXG00005028786) #24	LRRC10 (ENSBIXG00005028716) #25	BEST3 (ENSBIXG00005028702) #26	RAB3IP (ENSBIXG00005028623) #27	MYRFL (ENSBIXG00005028334) #28	CNOT2 (ENSBIXG00005028198) #29	KCNMB4 (ENSBIXG00005028115) #30	ENSBIXG00005028096 ##15	PTPRB (ENSBIXG00005027925) #31	PTPRR (ENSBIXG00005004557) #32	CPNE8 (ENSBIXG00005026517)	ENSBIXG00005026479	ENSBIXG00005026468	KIF21A (ENSBIXG00005004515)
American bison	MODERN SPECIES	3085	NUP107 (ENSBBBG00000013059) #13	SLC35E3 (ENSBBBG00000013071) #14	MDM2 (ENSBBBG00000013192) #15	CPM (ENSBBBG00000013229) #16	CPSF6 (ENSBBBG00000013241) #17	ENSBBBG00000013249 #21	ENSBBBG00000013299 #21	ENSBBBG00000013358 #21	ENSBBBG00000013406 #21	ENSBBBG00000002764 #21	ENSBBBG00000013485 #21	ENSBBBG00000013496 #21	ENSBBBG00000002831 #21	ENSBBBG00000009098 #21	ENSBBBG00000009101 #21	YEATS4 (ENSBBBG00000002926) #22	FRS2 (ENSBBBG00000013749) #23	CCT2 (ENSBBBG00000013777) #24	LRRC10 (ENSBBBG00000013788) #25	BEST3 (ENSBBBG00000007980) #26	RAB3IP (ENSBBBG00000003020) #27	MYRFL (ENSBBBG00000013947) #28	CNOT2 (ENSBBBG00000013982) #29	ENSBBBG00000013991 ##15	KCNMB4 (ENSBBBG00000013994) #30	PTPRB (ENSBBBG00000003197) #31	PTPRR (ENSBBBG00000014214) #32	CPNE8 (ENSBBBG00000014248)	ENSBBBG00000014256	KIF21A (ENSBBBG00000014508)	ABCD2 (ENSBBBG00000014543)
Siberian musk deer	MODERN SPECIES	1243											ENSMMSG00000020455 #21	ENSMMSG00000020485 #21	ENSMMSG00000020597 #21	ENSMMSG00000020612 #21	ENSMMSG00000020304 #21	YEATS4 (ENSMMSG00000020324) #22	FRS2 (ENSMMSG00000020358) #23	CCT2 (ENSMMSG00000020398) #24	LRRC10 (ENSMMSG00000020422) #25	BEST3 (ENSMMSG00000020449) #26	RAB3IP (ENSMMSG00000020870) #27	MYRFL (ENSMMSG00000021224) #28	ENSMMSG00000021405	CNOT2 (ENSMMSG00000021430) #29	KCNMB4 (ENSMMSG00000021522) #30	ENSMMSG00000021535	PTPRB (ENSMMSG00000021623) #31	PTPRR (ENSMMSG00000022063) #32	ENSMMSG00000022228
Cetacea	DUPLICATION
Cetacea	DUPLICATION
Cetacea	ANCESTRAL SPECIES	8	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.x #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.b #21	ENSGT00940000155811.m.a #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.x #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.b #21	ENSGT00940000155811.m.a #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.x #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.b #21	ENSGT00940000155811.m.a #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Dolphin	MODERN SPECIES	5192														CPSF6 (ENSTTRG00000013934) #17	LYZ (ENSTTRG00000013948) #21	YEATS4 (ENSTTRG00000013951) #22
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.x #12	ENSGT00390000012080 #13	ENSGT00390000006223.o	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.b #21	ENSGT00940000155811.m.a #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429.x #12	ENSGT00390000012080 #13	ENSGT00390000006223.o	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.b #21	ENSGT00940000155811.m.a #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Beluga whale	MODERN SPECIES	39	GRIP1 (ENSDLEG00000002505)	CAND1 (ENSDLEG00000002395) #7	DYRK2 (ENSDLEG00000002387) #8	IFNG (ENSDLEG00000002368) #9	IL26 (ENSDLEG00000002358)	IL22 (ENSDLEG00000002345) #10	MDM1 (ENSDLEG00000002328) #11	RAP1B (ENSDLEG00000002290) #12	NUP107 (ENSDLEG00000002204) #13	ENSDLEG00000002173	SLC35E3 (ENSDLEG00000002161) #14	MDM2 (ENSDLEG00000002140) #15	CPM (ENSDLEG00000002128) #16	CPSF6 (ENSDLEG00000002114) #17	LYZ (ENSDLEG00000002097) #21	YEATS4 (ENSDLEG00000002075) #22	FRS2 (ENSDLEG00000002044) #23	CCT2 (ENSDLEG00000002032) #24	LRRC10 (ENSDLEG00000002022) #25	BEST3 (ENSDLEG00000002007) #26	RAB3IP (ENSDLEG00000001987) #27	MYRFL (ENSDLEG00000001917) #28	CNOT2 (ENSDLEG00000001866) #29	KCNMB4 (ENSDLEG00000001850) #30	PTPRB (ENSDLEG00000001747) #31	PTPRR (ENSDLEG00000001674) #32	ENSDLEG00000001629 #34	LGR5 (ENSDLEG00000001307) #35	ZFC3H1 (ENSDLEG00000000767) #37	THAP2 (ENSDLEG00000000632)	TMEM19 (ENSDLEG00000000605)
Narwhal	MODERN SPECIES	313	CAND1 (ENSMMNG00015020350) #7	DYRK2 (ENSMMNG00015020381) #8	IFNG (ENSMMNG00015020415) #9	IL26 (ENSMMNG00015020431)	ENSMMNG00015020448	IL22 (ENSMMNG00015020462) #10	MDM1 (ENSMMNG00015020491) #11	RAP1B (ENSMMNG00015020558) #12	NUP107 (ENSMMNG00015020625) #13	ENSMMNG00015020695	SLC35E3 (ENSMMNG00015020704) #14	MDM2 (ENSMMNG00015020796) #15	CPM (ENSMMNG00015020978) #16	CPSF6 (ENSMMNG00015021010) #17	LYZ (ENSMMNG00015021074) #21	YEATS4 (ENSMMNG00015021113) #22	FRS2 (ENSMMNG00015021139) #23	CCT2 (ENSMMNG00015021165) #24	LRRC10 (ENSMMNG00015021232) #25	BEST3 (ENSMMNG00015021268) #26	RAB3IP (ENSMMNG00015021346) #27	MYRFL (ENSMMNG00015021487) #28	CNOT2 (ENSMMNG00015021588) #29	KCNMB4 (ENSMMNG00015021613) #30	PTPRB (ENSMMNG00015021665) #31	PTPRR (ENSMMNG00015021734) #32	TSPAN8 (ENSMMNG00015021757) #34	LGR5 (ENSMMNG00015021796) #35	ZFC3H1 (ENSMMNG00015021858) #37	THAP2 (ENSMMNG00015021865)	TMEM19 (ENSMMNG00015021870)
Vaquita	MODERN SPECIES	1	CAND1 (ENSPSNG00000005088) #7	ENSPSNG00000005068	DYRK2 (ENSPSNG00000005055) #8	IFNG (ENSPSNG00000005043) #9	IL26 (ENSPSNG00000005021)	IL22 (ENSPSNG00000005005) #10	MDM1 (ENSPSNG00000004949) #11	RAP1B (ENSPSNG00000004859) #12	NUP107 (ENSPSNG00000004735) #13	ENSPSNG00000004687	SLC35E3 (ENSPSNG00000004665) #14	MDM2 (ENSPSNG00000004530) #15	CPM (ENSPSNG00000004411) #16	CPSF6 (ENSPSNG00000004362) #17	LYZ (ENSPSNG00000004274) #21	ENSPSNG00000004237 #22	FRS2 (ENSPSNG00000017343) #23	LRRC10 (ENSPSNG00000017318) #25	CCT2 (ENSPSNG00000017179) #24	BEST3 (ENSPSNG00000016816) #26	ENSPSNG00000016764	RAB3IP (ENSPSNG00000016400) #27	MYRFL (ENSPSNG00000015558) #28	CNOT2 (ENSPSNG00000015330) #29	KCNMB4 (ENSPSNG00000015257) #30	PTPRB (ENSPSNG00000013842) #31	PTPRR (ENSPSNG00000013213) #32	TSPAN8 (ENSPSNG00000012942) #34	LGR5 (ENSPSNG00000012776) #35	ZFC3H1 (ENSPSNG00000012685) #37	THAP2 (ENSPSNG00000012584)
Sperm whale	MODERN SPECIES	17	ENSPCTG00005002955	ENSPCTG00005002978	ENSPCTG00005002982	IFNG (ENSPCTG00005002990) #9	IL26 (ENSPCTG00005003041)	IL22 (ENSPCTG00005003058) #10	MDM1 (ENSPCTG00005003076) #11	RAP1B (ENSPCTG00005003131) #12	NUP107 (ENSPCTG00005003181) #13	SLC35E3 (ENSPCTG00005003217) #14	MDM2 (ENSPCTG00005003287) #15	CPM (ENSPCTG00005003533) #16	CPSF6 (ENSPCTG00005003557) #17	ENSPCTG00005003588	LYZ (ENSPCTG00005003609) #21	YEATS4 (ENSPCTG00005003640) #22	FRS2 (ENSPCTG00005003667) #23	CCT2 (ENSPCTG00005003690) #24	LRRC10 (ENSPCTG00005003710) #25	BEST3 (ENSPCTG00005003748) #26	RAB3IP (ENSPCTG00005003850) #27	MYRFL (ENSPCTG00005003936) #28	CNOT2 (ENSPCTG00005004059) #29	ENSPCTG00005006323	KCNMB4 (ENSPCTG00005006332) #30	PTPRB (ENSPCTG00005006402) #31	PTPRR (ENSPCTG00005006955) #32	TSPAN8 (ENSPCTG00005007355) #34	LGR5 (ENSPCTG00005007445) #35	ZFC3H1 (ENSPCTG00005007789) #37	THAP2 (ENSPCTG00005007933)
Blue whale	MODERN SPECIES	1	CAND1 (ENSBMSG00010015970) #7	DYRK2 (ENSBMSG00010016027) #8	ENSBMSG00010016053	ENSBMSG00010016099	IFNG (ENSBMSG00010016111) #9	IL26 (ENSBMSG00010016137)	IL22 (ENSBMSG00010016173) #10	MDM1 (ENSBMSG00010016227) #11	RAP1B (ENSBMSG00010016329) #12	NUP107 (ENSBMSG00010016539) #13	SLC35E3 (ENSBMSG00010016616) #14	MDM2 (ENSBMSG00010016662) #15	CPM (ENSBMSG00010016777) #16	CPSF6 (ENSBMSG00010016808) #17	LYZ (ENSBMSG00010016920) #21	ENSBMSG00010016977 #22	FRS2 (ENSBMSG00010017006) #23	CCT2 (ENSBMSG00010017032) #24	LRRC10 (ENSBMSG00010017080) #25	BEST3 (ENSBMSG00010017115) #26	RAB3IP (ENSBMSG00010017532) #27	MYRFL (ENSBMSG00010017818) #28	CNOT2 (ENSBMSG00010018285) #29	KCNMB4 (ENSBMSG00010018340) #30	PTPRB (ENSBMSG00010018453) #31	PTPRR (ENSBMSG00010019232) #32	TSPAN8 (ENSBMSG00010019764) #34	ENSBMSG00010019786	LGR5 (ENSBMSG00010019821) #35	ZFC3H1 (ENSBMSG00010019991) #37	TMEM19 (ENSBMSG00010020316)
Cetacea	ANCESTRAL SPECIES	2	ENSGT00950000182983.B.b	ENSGT00940000160936	ENSGT00940000155645	ENSGT00390000015400	ENSGT00390000016068	ENSGT00390000005224	ENSGT00940000161660.c.b	ENSGT00940000160781	ENSGT00950000182933.C.b.b.a.b	ENSGT00950000182933.C.b.b.b	ENSGT00940000155971	ENSGT00940000159628	ENSGT00940000156049	ENSGT00950000182902.b.a	ENSGT00940000160026	ENSGT00940000155811.m.b #22	ENSGT00390000005855	ENSGT00390000000453	ENSGT00950000182844.b.b.b	ENSGT00390000005222	ENSGT00520000059044	ENSGT00940000159749	ENSGT00950000182920.a	ENSGT00390000014273.a	ENSGT00390000009995	ENSGT00530000063712.a.a.l	ENSGT00530000063712.a.a.k	ENSGT00940000154876.b	ENSGT00970000193421.C.b.d.b	ENSGT00530000064251	ENSGT00940000161170
Blue whale	MODERN SPECIES	11	KLHL25 (ENSBMSG00010006567)	AGBL1 (ENSBMSG00010006518)	NTRK3 (ENSBMSG00010005722)	MRPL46 (ENSBMSG00010005625)	MRPS11 (ENSBMSG00010005607)	DET1 (ENSBMSG00010004044)	AEN (ENSBMSG00010004029)	ISG20 (ENSBMSG00010004011)	ENSBMSG00010003992	ENSBMSG00010003977	ENSBMSG00010003952	HAPLN3 (ENSBMSG00010003935)	MFGE8 (ENSBMSG00010003855)	ABHD2 (ENSBMSG00010003762)	RLBP1 (ENSBMSG00010003747)	ENSBMSG00010003734 #22	FANCI (ENSBMSG00010003711)	POLG (ENSBMSG00010003677)	RHCG (ENSBMSG00010003646)	TICRR (ENSBMSG00010003613)	ENSBMSG00010003599	KIF7 (ENSBMSG00010003572)	ENSBMSG00010003544	PLIN1 (ENSBMSG00010003533)	WDR93 (ENSBMSG00010003510)	MESP1 (ENSBMSG00010003481)	MESP2 (ENSBMSG00010003467)	ANPEP (ENSBMSG00010003447)	ENSBMSG00010003430	ARPIN (ENSBMSG00010003420)	ZNF710 (ENSBMSG00010003411)
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00940000154146.a	ENSGT00950000182983.B.b	ENSGT00940000160936	ENSGT00940000155645	ENSGT00390000015400	ENSGT00390000016068	ENSGT00390000005224	ENSGT00940000161660.c.b	ENSGT00940000160781	ENSGT00950000182933.C.b.b.b	ENSGT00940000155971	ENSGT00940000159628	ENSGT00940000156049	ENSGT00950000182902.b.a	ENSGT00940000160026	ENSGT00940000155811.m.b #22	ENSGT00390000005855	ENSGT00390000000453	ENSGT00950000182844.b.b.b	ENSGT00940000153434.a.b.a.a.a.a.b	ENSGT00390000005222	ENSGT00520000059044	ENSGT00940000159749	ENSGT00950000182920.a	ENSGT00390000014273.a	ENSGT00390000009995	ENSGT00530000063712.a.a.l	ENSGT00530000063712.a.a.k	ENSGT00940000154876.b	ENSGT00970000193421.C.b.d.b	ENSGT00530000064251
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00940000154146.a	ENSGT00950000182983.B.b	ENSGT00940000160936	ENSGT00940000155645	ENSGT00390000015400	ENSGT00390000016068	ENSGT00390000005224	ENSGT00940000161660.c.b	ENSGT00940000160781	ENSGT00950000182933.C.b.b.b	ENSGT00940000155971	ENSGT00940000159628	ENSGT00940000156049	ENSGT00950000182902.b.a	ENSGT00940000160026	ENSGT00940000155811.m.b #22	ENSGT00390000005855	ENSGT00390000000453	ENSGT00950000182844.b.b.b	ENSGT00940000153434.a.b.a.a.a.a.b	ENSGT00390000005222	ENSGT00520000059044	ENSGT00940000159749	ENSGT00950000182920.a	ENSGT00390000014273.a	ENSGT00390000009995	ENSGT00530000063712.a.a.l	ENSGT00530000063712.a.a.k	ENSGT00940000154876.b	ENSGT00970000193421.C.b.d.b	ENSGT00530000064251
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00950000182983.B.b	ENSGT00940000155478.bb.b.a	ENSGT00940000160936	ENSGT00940000155645	ENSGT00390000015400	ENSGT00390000016068	ENSGT00390000005224	ENSGT00940000161660.c.b	ENSGT00940000160781	ENSGT00950000182933.C.b.b.b	ENSGT00940000155971	ENSGT00940000159628	ENSGT00940000156049	ENSGT00950000182902.b.a	ENSGT00940000160026	ENSGT00940000155811.m.b #22	ENSGT00390000005855	ENSGT00390000000453	ENSGT00950000182844.b.b.b	ENSGT00940000153434.a.b.a.a.a.a.b	ENSGT00390000005222	ENSGT00520000059044	ENSGT00940000159749	ENSGT00950000182920.a	ENSGT00390000014273.a	ENSGT00390000009995	ENSGT00530000063712.a.a.l	ENSGT00530000063712.a.a.k	ENSGT00940000154876.b	ENSGT00970000193421.C.b.d.b	ENSGT00530000064251
Vaquita	MODERN SPECIES	11	ENSPSNG00000003803	KLHL25 (ENSPSNG00000003729)	ENSPSNG00000003715	AGBL1 (ENSPSNG00000003674)	NTRK3 (ENSPSNG00000003612)	MRPL46 (ENSPSNG00000003560)	MRPS11 (ENSPSNG00000003541)	DET1 (ENSPSNG00000003521)	ENSPSNG00000003502	ISG20 (ENSPSNG00000003492)	ENSPSNG00000003462	ACAN (ENSPSNG00000003413)	ENSPSNG00000003297	ABHD2 (ENSPSNG00000003216)	RLBP1 (ENSPSNG00000003186)	ENSPSNG00000003166 #22	FANCI (ENSPSNG00000003139)	POLG (ENSPSNG00000003089)	RHCG (ENSPSNG00000003046)	ENSPSNG00000003026	TICRR (ENSPSNG00000002997)	ENSPSNG00000002979	KIF7 (ENSPSNG00000002955)	PLIN1 (ENSPSNG00000002925)	PEX11A (ENSPSNG00000002902)	WDR93 (ENSPSNG00000002868)	MESP1 (ENSPSNG00000002843)	MESP2 (ENSPSNG00000002834)	ANPEP (ENSPSNG00000002313)	ENSPSNG00000002023	ENSPSNG00000002002
Cetacea	ANCESTRAL SPECIES	1	ENSGT00510000047951	ENSGT00940000159322	ENSGT00940000156396.a	ENSGT00550000074792.a.b	ENSGT00530000063407.b	ENSGT00410000025556.a.a.a.a	ENSGT01030000234566.e.b.a.b	ENSGT00390000006721	ENSGT00390000007135	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156685	ENSGT00940000159136	ENSGT00940000156722	ENSGT00940000154245.A	ENSGT00940000155811.n #22	ENSGT00940000159531	ENSGT00390000009693	ENSGT00390000002292.b	ENSGT00940000163112	ENSGT00940000159591	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00940000169007	ENSGT00390000012630.A	ENSGT00390000010107	ENSGT00940000157281	ENSGT00950000182859.A.a.b.b
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00510000047951	ENSGT00940000159322	ENSGT00940000156396.a	ENSGT00550000074792.a.b	ENSGT00530000063407.b	ENSGT00410000025556.a.a.a.a	ENSGT01030000234566.e.b.a.b	ENSGT00390000006721	ENSGT00390000007135	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156685	ENSGT00940000159136	ENSGT00940000156722	ENSGT00940000154245.A	ENSGT00940000155811.n #22	ENSGT00940000159531	ENSGT00390000009693	ENSGT00390000002292.b	ENSGT00940000163112	ENSGT00940000159591	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692	ENSGT00390000010799.u.b.a.a.b	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000016769.k	ENSGT00390000012630.A	ENSGT00390000010107	ENSGT00940000157281
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00510000047951	ENSGT00940000159322	ENSGT00940000156396.a	ENSGT00550000074792.a.b	ENSGT00530000063407.b	ENSGT00410000025556.a.a.a.a	ENSGT01030000234566.e.b.a.b	ENSGT00390000006721	ENSGT00390000007135	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156685	ENSGT00940000159136	ENSGT00940000156722	ENSGT00940000154245.A	ENSGT00940000155811.n #22	ENSGT00940000159531	ENSGT00390000009693	ENSGT00390000002292.b	ENSGT00940000163112	ENSGT00940000159591	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692	ENSGT00390000010799.u.b.a.a.b	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000016769.k	ENSGT00390000012630.A	ENSGT00390000010107	ENSGT00940000157281
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00940000159322	ENSGT00940000156396.a	ENSGT00550000074792.a.b	ENSGT00530000063407.b	ENSGT00410000025556.a.a.a.a	ENSGT01000000216403	ENSGT01030000234566.e.b.a.b	ENSGT00390000006721	ENSGT00390000007135	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156685	ENSGT00940000159136	ENSGT00940000156722	ENSGT00940000154245.A	ENSGT00940000155811.n #22	ENSGT00940000159531	ENSGT00390000009693	ENSGT00390000002292.b	ENSGT00940000163112	ENSGT00940000159591	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000016769.k	ENSGT00390000012630.A	ENSGT00390000010107	ENSGT00940000157281	ENSGT00950000182859.A.a.b.b
Monodontidae	ANCESTRAL SPECIES	7	ENSGT00940000156396.a	ENSGT00550000074792.a.b	ENSGT00530000063407.b	ENSGT00410000025556.a.a.a.a	ENSGT01000000216403	ENSGT01030000234566.e.b.a.b	ENSGT00940000153295.a.c	ENSGT00390000006721	ENSGT00390000007135	ENSGT00390000001644	ENSGT00940000154726	ENSGT00940000156685	ENSGT00940000159136	ENSGT00940000156722	ENSGT00940000154245.A	ENSGT00940000155811.n #22	ENSGT00940000159531	ENSGT00390000009693	ENSGT00390000002292.b	ENSGT00940000163112	ENSGT00940000159591	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000016769.k	ENSGT00390000012630.A	ENSGT00390000010107	ENSGT00940000157281	ENSGT00950000182859.A.a.b.b
Beluga whale	DUPLICATION
Beluga whale	MODERN SPECIES	33	FBLL1 (ENSDLEG00000012282)	RARS (ENSDLEG00000012297)	WWC1 (ENSDLEG00000012345)	ENSDLEG00000012670	TENM2 (ENSDLEG00000013062)	ENSDLEG00000019230	ENSDLEG00000019235	MAT2B (ENSDLEG00000019263)	HMMR (ENSDLEG00000000068)	NUDCD2 (ENSDLEG00000000086)	CCNG1 (ENSDLEG00000000108)	GABRG2 (ENSDLEG00000000135)	GABRA1 (ENSDLEG00000000155)	GABRA6 (ENSDLEG00000000216)	GABRB2 (ENSDLEG00000000252)	ENSDLEG00000000292 #22	ENSDLEG00000000308 #22	ATP10B (ENSDLEG00000000385)	PTTG1 (ENSDLEG00000000576)	SLU7 (ENSDLEG00000000609)	C1QTNF2 (ENSDLEG00000000647)	CCNJL (ENSDLEG00000000668)	ENSDLEG00000000681
Beluga whale	MODERN SPECIES	33	RARS (ENSDLEG00000012297)	WWC1 (ENSDLEG00000012345)	ENSDLEG00000012670	TENM2 (ENSDLEG00000013062)	ENSDLEG00000019230	ENSDLEG00000019235	MAT2B (ENSDLEG00000019263)	HMMR (ENSDLEG00000000068)	NUDCD2 (ENSDLEG00000000086)	CCNG1 (ENSDLEG00000000108)	GABRG2 (ENSDLEG00000000135)	GABRA1 (ENSDLEG00000000155)	GABRA6 (ENSDLEG00000000216)	GABRB2 (ENSDLEG00000000252)	ENSDLEG00000000292 #22	ENSDLEG00000000308 #22	ATP10B (ENSDLEG00000000385)	PTTG1 (ENSDLEG00000000576)	SLU7 (ENSDLEG00000000609)	C1QTNF2 (ENSDLEG00000000647)	CCNJL (ENSDLEG00000000668)	ENSDLEG00000000681
Vaquita	MODERN SPECIES	14	PANK3 (ENSPSNG00000009488)	FBLL1 (ENSPSNG00000009528)	RARS1 (ENSPSNG00000009543)	WWC1 (ENSPSNG00000009609)	ENSPSNG00000009702	TENM2 (ENSPSNG00000009844)	ENSPSNG00000010793	ENSPSNG00000010863	HMMR (ENSPSNG00000010894)	NUDCD2 (ENSPSNG00000011084)	CCNG1 (ENSPSNG00000011162)	GABRG2 (ENSPSNG00000011387)	GABRA1 (ENSPSNG00000012145)	GABRA6 (ENSPSNG00000012336)	GABRB2 (ENSPSNG00000012557)	ENSPSNG00000012949 #22	ATP10B (ENSPSNG00000013031)	ENSPSNG00000013589	SLU7 (ENSPSNG00000013646)	FAM200C (ENSPSNG00000013690)	C1QTNF2 (ENSPSNG00000013732)	CCNJL (ENSPSNG00000013861)	FABP6 (ENSPSNG00000013965)	PWWP2A (ENSPSNG00000014054)	TTC1 (ENSPSNG00000014163)	ADRA1B (ENSPSNG00000014285)	ENSPSNG00000014336	IL12B (ENSPSNG00000014420)	ENSPSNG00000014512	RNF145 (ENSPSNG00000014588)	EBF1 (ENSPSNG00000014744)
Blue whale	MODERN SPECIES	14	ENSBMSG00010009367	FBLL1 (ENSBMSG00010009376)	RARS1 (ENSBMSG00010009380)	WWC1 (ENSBMSG00010009399)	TENM2 (ENSBMSG00010009463)	ENSBMSG00010009631	MAT2B (ENSBMSG00010009664)	ENSBMSG00010009689	HMMR (ENSBMSG00010009695)	NUDCD2 (ENSBMSG00010009716)	ENSBMSG00010009736	GABRG2 (ENSBMSG00010009793)	GABRA1 (ENSBMSG00010010066)	GABRA6 (ENSBMSG00010010096)	GABRB2 (ENSBMSG00010010133)	ENSBMSG00010010162 #22	ATP10B (ENSBMSG00010010192)	ENSBMSG00010010251	SLU7 (ENSBMSG00010010271)	FAM200C (ENSBMSG00010010302)	C1QTNF2 (ENSBMSG00010010310)	CCNJL (ENSBMSG00010010325)	FABP6 (ENSBMSG00010010332)	PWWP2A (ENSBMSG00010010346)	TTC1 (ENSBMSG00010010355)	ADRA1B (ENSBMSG00010010374)	ENSBMSG00010010381	IL12B (ENSBMSG00010010391)	ENSBMSG00010010400	RNF145 (ENSBMSG00010010449)	KCNMB1 (ENSBMSG00010010631) ##30
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT00950000185293	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.a #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Carnivora	ANCESTRAL SPECIES	3	ENSGT00950000185293	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.a #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Felidae	ANCESTRAL SPECIES	2	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.a #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Panthera	ANCESTRAL SPECIES		ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.a #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Panthera_a	ANCESTRAL SPECIES	12	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.a #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
lion	MODERN SPECIES	7	GRIP1 (ENSPLOG00000014295)	CAND1 (ENSPLOG00000014752) #7	ENSPLOG00000014806	DYRK2 (ENSPLOG00000014858) #8	IFNG (ENSPLOG00000014895) #9	IL26 (ENSPLOG00000014932)	IL22 (ENSPLOG00000014984) #10	MDM1 (ENSPLOG00000015099) #11	RAP1B (ENSPLOG00000015650) #12	NUP107 (ENSPLOG00000015883) #13	SLC35E3 (ENSPLOG00000016361) #14	MDM2 (ENSPLOG00000016451) #15	CPM (ENSPLOG00000016659) #16	CPSF6 (ENSPLOG00000016705) #17	LYZ (ENSPLOG00000016817) #21	YEATS4 (ENSPLOG00000016958) #22	FRS2 (ENSPLOG00000017008) #23	CCT2 (ENSPLOG00000017039) #24	LRRC10 (ENSPLOG00000017086) #25	BEST3 (ENSPLOG00000017136) #26	RAB3IP (ENSPLOG00000017437) #27	MYRFL (ENSPLOG00000017850) #28	CNOT2 (ENSPLOG00000018335) #29	KCNMB4 (ENSPLOG00000018417) #30	PTPRB (ENSPLOG00000018757) #31	PTPRR (ENSPLOG00000020206) #32	TSPAN8 (ENSPLOG00000001172) #34	LGR5 (ENSPLOG00000001248) #35	ZFC3H1 (ENSPLOG00000001441) #37	THAP2 (ENSPLOG00000001519)	TMEM19 (ENSPLOG00000001540)
leopard	MODERN SPECIES	27	HELB (ENSPPRG00000011423)	GRIP1 (ENSPPRG00000011249)	CAND1 (ENSPPRG00000009344) #7	DYRK2 (ENSPPRG00000009253) #8	IFNG (ENSPPRG00000009194) #9	IL26 (ENSPPRG00000008685)	IL22 (ENSPPRG00000008322) #10	MDM1 (ENSPPRG00000007897) #11	RAP1B (ENSPPRG00000006206) #12	NUP107 (ENSPPRG00000004194) #13	SLC35E3 (ENSPPRG00000001138) #14	MDM2 (ENSPPRG00000000082) #15	CPM (ENSPPRG00000024809) #16	CPSF6 (ENSPPRG00000021620) #17	LYZ (ENSPPRG00000017312) #21	YEATS4 (ENSPPRG00000016778) #22	ENSPPRG00000015548	FRS2 (ENSPPRG00000013876) #23	CCT2 (ENSPPRG00000013206) #24	LRRC10 (ENSPPRG00000015337) #25	BEST3 (ENSPPRG00000012320) #26	ENSPPRG00000011919 #26	RAB3IP (ENSPPRG00000011476) #27	MYRFL (ENSPPRG00000008667) #28	ENSPPRG00000007016	CNOT2 (ENSPPRG00000004080) #29	KCNMB4 (ENSPPRG00000002573) #30	PTPRB (ENSPPRG00000001785) #31	PTPRR (ENSPPRG00000012446) #32	TSPAN8 (ENSPPRG00000011822) #34	LGR5 (ENSPPRG00000011314) #35
Tiger	MODERN SPECIES	169	IRAK3 (ENSPTIG00000005172)	HELB (ENSPTIG00000007492)	GRIP1 (ENSPTIG00000009058)	CAND1 (ENSPTIG00000012929) #7	IFNG (ENSPTIG00000015713) #9	IL26 (ENSPTIG00000017240)	IL22 (ENSPTIG00000018462) #10	MDM1 (ENSPTIG00000020044) #11	RAP1B (ENSPTIG00000021048) #12	NUP107 (ENSPTIG00000009802) #13	SLC35E3 (ENSPTIG00000015940) #14	MDM2 (ENSPTIG00000016929) #15	CPM (ENSPTIG00000021820) #16	CPSF6 (ENSPTIG00000004079) #17	LYZ (ENSPTIG00000008254) #21	YEATS4 (ENSPTIG00000009193) #22	FRS2 (ENSPTIG00000012754) #23	CCT2 (ENSPTIG00000014050) #24	LRRC10 (ENSPTIG00000004960) #25	BEST3 (ENSPTIG00000016348) #26	ENSPTIG00000016885 #26	RAB3IP (ENSPTIG00000017242) #27	MYRFL (ENSPTIG00000020746) #28	ENSPTIG00000006533	CNOT2 (ENSPTIG00000007082) #29	KCNMB4 (ENSPTIG00000009473) #30	PTPRB (ENSPTIG00000010358) #31	PTPRR (ENSPTIG00000021740) #32	TSPAN8 (ENSPTIG00000001361) #34	LGR5 (ENSPTIG00000003854) #35	ZFC3H1 (ENSPTIG00000006898) #37
Cat	MODERN SPECIES	238	GRIP1 (ENSFCAG00000012630)	CAND1 (ENSFCAG00000023558) #7	DYRK2 (ENSFCAG00000011099) #8	IFNG (ENSFCAG00000009014) #9	IL26 (ENSFCAG00000010574)	IL22 (ENSFCAG00000015526) #10	MDM1 (ENSFCAG00000022390) #11	RAP1B (ENSFCAG00000025976) #12	NUP107 (ENSFCAG00000012824) #13	SLC35E3 (ENSFCAG00000014306) #14	MDM2 (ENSFCAG00000024456) #15	CPM (ENSFCAG00000014308) #16	CPSF6 (ENSFCAG00000002855) #17	ENSFCAG00000051665	LYZ (ENSFCAG00000005424) #21	YEATS4 (ENSFCAG00000025972) #22	FRS2 (ENSFCAG00000034591) #23	CCT2 (ENSFCAG00000001610) #24	LRRC10 (ENSFCAG00000001611) #25	BEST3 (ENSFCAG00000046521) #26	RAB3IP (ENSFCAG00000015554) #27	MYRFL (ENSFCAG00000031998) #28	CNOT2 (ENSFCAG00000024278) #29	KCNMB4 (ENSFCAG00000022233) #30	PTPRB (ENSFCAG00000009906) #31	PTPRR (ENSFCAG00000006180) #32	TSPAN8 (ENSFCAG00000032334) #34	LGR5 (ENSFCAG00000008064) #35	ZFC3H1 (ENSFCAG00000024198) #37	TMEM19 (ENSFCAG00000013702)	RAB21 (ENSFCAG00000037980)
Caniformia	ANCESTRAL SPECIES	20	ENSGT00950000185293	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.a #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Canidae	ANCESTRAL SPECIES	44	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00530000063666.b.y.a.a.b	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00940000163824.h.a	ENSGT00730000110905.b.m.a #17	ENSGT00730000110905.b.m.b #17	ENSGT00940000153832.f.x.a #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000164030	ENSGT00980000202759	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088
Canis_lupus	ANCESTRAL SPECIES	40	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00530000063666.b.y.a.a.b	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00940000163824.h.a	ENSGT00730000110905.b.m.a #17	ENSGT00940000153832.f.x.a #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000164030	ENSGT00980000202759	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088
Dingo	MODERN SPECIES	374	CAND1 (ENSCAFG00020017066) #7	DYRK2 (ENSCAFG00020017042) #8	IFNG (ENSCAFG00020017024) #9	IL26 (ENSCAFG00020017022)	IL22 (ENSCAFG00020017019) #10	MDM1 (ENSCAFG00020017014) #11	RAP1B (ENSCAFG00020017012) #12	NUP107 (ENSCAFG00020017009) #13	SLC35E3 (ENSCAFG00020017006) #14	MDM2 (ENSCAFG00020017002) #15	CPM (ENSCAFG00020016960) #16	ENSCAFG00020016955	CPSF6 (ENSCAFG00020016950) #17	ENSCAFG00020016946	LYZ (ENSCAFG00020016944) #21	YEATS4 (ENSCAFG00020016942) #22	FRS2 (ENSCAFG00020016939) #23	ENSCAFG00020016882 #24	ENSCAFG00020016874	BEST3 (ENSCAFG00020016870) #26	RAB3IP (ENSCAFG00020016864) #27	ENSCAFG00020016861 #28	CNOT2 (ENSCAFG00020016849) #29	KCNMB4 (ENSCAFG00020016846) #30	PTPRB (ENSCAFG00020016719) #31	PTPRR (ENSCAFG00020016602) #32	TSPAN8 (ENSCAFG00020016597) #34	LGR5 (ENSCAFG00020016549) #35	ENSCAFG00020016544	ZFC3H1 (ENSCAFG00020016502) #37	THAP2 (ENSCAFG00020016493)
Dog	MODERN SPECIES	1	DYRK2 (ENSCAFG00845013634) #8	IFNG (ENSCAFG00845013680) #9	IL26 (ENSCAFG00845013704)	IL22 (ENSCAFG00845013728) #10	MDM1 (ENSCAFG00845013780) #11	ENSCAFG00845013885	RAP1B (ENSCAFG00845013952) #12	NUP107 (ENSCAFG00845014063) #13	MDM2 (ENSCAFG00845016387) #15	ENSCAFG00845016874	CPM (ENSCAFG00845016944) #16	ENSCAFG00845017015	ENSCAFG00845017068 #17	ENSCAFG00845017170	LYZ (ENSCAFG00845017223) #21	YEATS4 (ENSCAFG00845017320) #22	FRS2 (ENSCAFG00845017484) #23	CCT2 (ENSCAFG00845017606) #24	LRRC10 (ENSCAFG00845017783)	ENSCAFG00845017815	BEST3 (ENSCAFG00845017873) #26	RAB3IP (ENSCAFG00845018149) #27	MYRFL (ENSCAFG00845018692) #28	CNOT2 (ENSCAFG00845019498) #29	KCNMB4 (ENSCAFG00845019977) #30	PTPRB (ENSCAFG00845020301) #31	PTPRR (ENSCAFG00845021934) #32	TSPAN8 (ENSCAFG00845022247) #34	LGR5 (ENSCAFG00845022363) #35	ZFC3H1 (ENSCAFG00845022821) #37	ENSCAFG00845023438
Red fox	MODERN SPECIES	38	IFNG (ENSVVUG00000010296) #9	IL26 (ENSVVUG00000010272)	IL22 (ENSVVUG00000010232) #10	MDM1 (ENSVVUG00000010202) #11	ENSVVUG00000010196	RAP1B (ENSVVUG00000010191) #12	ENSVVUG00000010189	NUP107 (ENSVVUG00000010182) #13	SLC35E3 (ENSVVUG00000010179) #14	ENSVVUG00000010177 #15	ENSVVUG00000010170 #15	ENSVVUG00000010166 #16	ENSVVUG00000010161	ENSVVUG00000010156 #17	LYZ (ENSVVUG00000010151) #21	YEATS4 (ENSVVUG00000010145) #22	ENSVVUG00000010142	FRS2 (ENSVVUG00000010131) #23	CCT2 (ENSVVUG00000008957) #24	ENSVVUG00000008942	ENSVVUG00000008940	BEST3 (ENSVVUG00000008934) #26	RAB3IP (ENSVVUG00000008925) #27	ENSVVUG00000008893 #28	CNOT2 (ENSVVUG00000008840) #29	KCNMB4 (ENSVVUG00000008834) #30	PTPRB (ENSVVUG00000008793) #31	PTPRR (ENSVVUG00000008764) #32	TSPAN8 (ENSVVUG00000008726) #34	ENSVVUG00000008710	ENSVVUG00000008707
Caniformia_b	ANCESTRAL SPECIES	18	ENSGT00950000185293	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.a #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Mustelinae	ANCESTRAL SPECIES	4	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.a #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
American mink	MODERN SPECIES	60	HELB (ENSNVIG00000009206)	GRIP1 (ENSNVIG00000009262)	CAND1 (ENSNVIG00000009965) #7	DYRK2 (ENSNVIG00000009984) #8	IFNG (ENSNVIG00000010000) #9	IL26 (ENSNVIG00000010015)	IL22 (ENSNVIG00000010024) #10	MDM1 (ENSNVIG00000010043) #11	RAP1B (ENSNVIG00000010102) #12	NUP107 (ENSNVIG00000010296) #13	S35E3 (ENSNVIG00000010458) #14	MDM2 (ENSNVIG00000010478) #15	CBPM (ENSNVIG00000010561) #16	CPSF6 (ENSNVIG00000010571) #17	LYZ (ENSNVIG00000010610) #21	YETS4 (ENSNVIG00000010642) #22	ENSNVIG00000010671	FRS2 (ENSNVIG00000010684) #23	CCT2 (ENSNVIG00000010718) #24	LRRC10 (ENSNVIG00000010802) #25	BEST3 (ENSNVIG00000010810) #26	RAB3IP (ENSNVIG00000010860) #27	MYRFL (ENSNVIG00000010946) #28	CNOT2 (ENSNVIG00000011049) #29	KCMB4 (ENSNVIG00000011087) #30	PTPRB (ENSNVIG00000011107) #31	PTPRR (ENSNVIG00000011604) #32	TSPAN8 (ENSNVIG00000011678) #34	LGR5 (ENSNVIG00000011715) #35	ZFC3H1 (ENSNVIG00000011818) #37	THAP2 (ENSNVIG00000011932)
Ferret	MODERN SPECIES	196	GRIP1 (ENSMPUG00000017516)	CAND1 (ENSMPUG00000017514) #7	DYRK2 (ENSMPUG00000019015) #8	ENSMPUG00000017513	IFNG (ENSMPUG00000017512) #9	ENSMPUG00000017511	IL22 (ENSMPUG00000017510) #10	MDM1 (ENSMPUG00000017509) #11	RAP1B (ENSMPUG00000017508) #12	NUP107 (ENSMPUG00000017507) #13	SLC35E3 (ENSMPUG00000017506) #14	MDM2 (ENSMPUG00000017505) #15	CPM (ENSMPUG00000017504) #16	CPSF6 (ENSMPUG00000017502) #17	LYZ (ENSMPUG00000017501) #21	YEATS4 (ENSMPUG00000017500) #22	FRS2 (ENSMPUG00000017499) #23	CCT2 (ENSMPUG00000017498) #24	ENSMPUG00000019013	BEST3 (ENSMPUG00000017497) #26	RAB3IP (ENSMPUG00000017496) #27	MYRFL (ENSMPUG00000017495) #28	CNOT2 (ENSMPUG00000017494) #29	KCNMB4 (ENSMPUG00000017493) #30	PTPRB (ENSMPUG00000017492) #31	PTPRR (ENSMPUG00000017491) #32	TSPAN8 (ENSMPUG00000017490) #34	LGR5 (ENSMPUG00000017489) #35	ZFC3H1 (ENSMPUG00000017488) #37	ENSMPUG00000017487	TMEM19 (ENSMPUG00000017486)
Ursidae	DUPLICATION
Ursidae	ANCESTRAL SPECIES																	ENSGT00940000155811.o #22
Giant Panda	MODERN SPECIES	684																ENSAMEG00000028546 #22
Ursidae	ANCESTRAL SPECIES	13	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.db #15	ENSGT00940000158580 #16	ENSGT00860000135722	ENSGT00940000163824.h.a	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.a #21	ENSGT00940000155811.p #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Ursus	ANCESTRAL SPECIES	23	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106.a #11	ENSGT00390000004106.b #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.db #15	ENSGT00940000158580 #16	ENSGT00860000135722	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.a #21	ENSGT00940000155811.p #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000163916	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998	ENSGT00940000156786
Polar bear	MODERN SPECIES	113	DYRK2 (ENSUMAG00000020678) #8	IFNG (ENSUMAG00000020686) #9	IL26 (ENSUMAG00000020688)	IL22 (ENSUMAG00000020696) #10	ENSUMAG00000020708 #11	ENSUMAG00000020713 #11	ENSUMAG00000020720 #12	NUP107 (ENSUMAG00000020723) #13	SLC35E3 (ENSUMAG00000020751) #14	MDM2 (ENSUMAG00000020757) #15	ENSUMAG00000020767	CPM (ENSUMAG00000020769) #16	ENSUMAG00000020772	CPSF6 (ENSUMAG00000020779) #17	LYZ (ENSUMAG00000020794) #21	YEATS4 (ENSUMAG00000020800) #22	FRS2 (ENSUMAG00000020810) #23	CCT2 (ENSUMAG00000020818) #24	BEST3 (ENSUMAG00000020823) #26	RAB3IP (ENSUMAG00000020826) #27	MYRFL (ENSUMAG00000020838) #28	CNOT2 (ENSUMAG00000020863) #29	PTPRB (ENSUMAG00000020883) #31	PTPRR (ENSUMAG00000020913) #32	TSPAN8 (ENSUMAG00000020967) #34	LGR5 (ENSUMAG00000020996) #35	ZFC3H1 (ENSUMAG00000021131) #37	THAP2 (ENSUMAG00000021140)	TMEM19 (ENSUMAG00000021142)	RAB21 (ENSUMAG00000021145)	TBC1D15 (ENSUMAG00000021152)
American black bear	MODERN SPECIES	1799													ENSUAMG00000023494	CPSF6 (ENSUAMG00000023492) #17	LYZ (ENSUAMG00000023491) #21	YEATS4 (ENSUAMG00000023488) #22
Giant Panda	MODERN SPECIES	6	ENSAMEG00000008733 #8	ENSAMEG00000029764 #8	IFNG (ENSAMEG00000008725) #9	IL26 (ENSAMEG00000008723)	IL22 (ENSAMEG00000008704) #10	MDM1 (ENSAMEG00000008648) #11	RAP1B (ENSAMEG00000008637) #12	NUP107 (ENSAMEG00000008570) #13	SLC35E3 (ENSAMEG00000008562) #14	MDM2 (ENSAMEG00000008526) #15	CPM (ENSAMEG00000008521) #16	ENSAMEG00000028950	ENSAMEG00000026211	CPSF6 (ENSAMEG00000011781) #17	LYZ (ENSAMEG00000011820) #21	YEATS4 (ENSAMEG00000011836) #22	FRS2 (ENSAMEG00000024331) #23	CCT2 (ENSAMEG00000011869) #24	LRRC10 (ENSAMEG00000019470) #25	BEST3 (ENSAMEG00000011886) #26	RAB3IP (ENSAMEG00000011900) #27	MYRFL (ENSAMEG00000011926) #28	CNOT2 (ENSAMEG00000011938) #29	KCNMB4 (ENSAMEG00000011974) #30	PTPRB (ENSAMEG00000000615) #31	PTPRR (ENSAMEG00000000565) #32	TSPAN8 (ENSAMEG00000000535) #34	LGR5 (ENSAMEG00000000527) #35	ZFC3H1 (ENSAMEG00000000498) #37	THAP2 (ENSAMEG00000025964)	TMEM19 (ENSAMEG00000000486)
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.y #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Equus	ANCESTRAL SPECIES	43	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.x.a #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000174938	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Horse	MODERN SPECIES	27	HELB (ENSECAG00000007536)	GRIP1 (ENSECAG00000008246)	CAND1 (ENSECAG00000013404) #7	DYRK2 (ENSECAG00000015977) #8	IFNG (ENSECAG00000028288) #9	IL26 (ENSECAG00000035920)	IL22 (ENSECAG00000019526) #10	MDM1 (ENSECAG00000000713) #11	RAP1B (ENSECAG00000004651) #12	NUP107 (ENSECAG00000007483) #13	SLC35E3 (ENSECAG00000041781) #14	MDM2 (ENSECAG00000013604) #15	CPM (ENSECAG00000015198) #16	CPSF6 (ENSECAG00000015988) #17	LYZ (ENSECAG00000018113) #21	YEATS4 (ENSECAG00000020166) #22	FRS2 (ENSECAG00000020194) #23	H3-3B (ENSECAG00000033238)	CCT2 (ENSECAG00000020755) #24	ENSECAG00000020800	BEST3 (ENSECAG00000021025) #26	RAB3IP (ENSECAG00000021652) #28	CNOT2 (ENSECAG00000013864) #29	KCNMB4 (ENSECAG00000013805) #30	PTPRB (ENSECAG00000037450) #31	ENSECAG00000039602	PTPRR (ENSECAG00000026963) #32	TSPAN8 (ENSECAG00000026887) #34	ENSECAG00000044717	LGR5 (ENSECAG00000011949) #35	ZFC3H1 (ENSECAG00000026833) #37
Donkey	MODERN SPECIES	14	HELB (ENSEASG00005007965)	GRIP1 (ENSEASG00005007974)	CAND1 (ENSEASG00005007987) #7	DYRK2 (ENSEASG00005007992) #8	IFNG (ENSEASG00005007999) #9	IL26 (ENSEASG00005008005)	IL22 (ENSEASG00005008008) #10	MDM1 (ENSEASG00005008018) #11	RAP1B (ENSEASG00005008040) #12	NUP107 (ENSEASG00005008044) #13	SLC35E3 (ENSEASG00005008050) #14	MDM2 (ENSEASG00005008055) #15	CPM (ENSEASG00005008059) #16	CPSF6 (ENSEASG00005008066) #17	Lyz (ENSEASG00005034486) #21	YEATS4 (ENSEASG00005008073) #22	FRS2 (ENSEASG00005036741) #23	CCT2 (ENSEASG00005008081) #24	ENSEASG00005008084	BEST3 (ENSEASG00005008087) #26	RAB3IP (ENSEASG00005028028) #27	MYRFL (ENSEASG00005008099) #28	CNOT2 (ENSEASG00005008113) #29	KCNMB4 (ENSEASG00005030878) #30	PTPRB (ENSEASG00005008122) #31	PTPRR (ENSEASG00005008156) #32	TSPAN8 (ENSEASG00005008207) #34	LGR5 (ENSEASG00005008216) #35	ZFC3H1 (ENSEASG00005008229) #37	THAP2 (ENSEASG00005008234)	ENSEASG00005008236
Chiroptera	ANCESTRAL SPECIES	4	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.y #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Megabat	MODERN SPECIES	3564															LYZ (ENSPVAG00000000926) #21	YEATS4 (ENSPVAG00000000931) #22	FRS2 (ENSPVAG00000000933) #23	CCT2 (ENSPVAG00000000936) #24	BEST3 (ENSPVAG00000000944) #26
Microchiroptera	ANCESTRAL SPECIES	2	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.y #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Greater horseshoe bat	MODERN SPECIES	1	DYRK2 (ENSRFEG00010002341) #8	IFNG (ENSRFEG00010002364) #9	ENSRFEG00010002377	IL26 (ENSRFEG00010002390)	IL22 (ENSRFEG00010002409) #10	MDM1 (ENSRFEG00010002451) #11	ENSRFEG00010002535 #12	NUP107 (ENSRFEG00010002607) #13	ENSRFEG00010002704	SLC35E3 (ENSRFEG00010002724) #14	ENSRFEG00010002741	ENSRFEG00010002867 #15	CPM (ENSRFEG00010003042) #16	CPSF6 (ENSRFEG00010003087) #17	ENSRFEG00010003140 #21	YEATS4 (ENSRFEG00010003171) #22	FRS2 (ENSRFEG00010003207) #23	CCT2 (ENSRFEG00010003244) #24	LRRC10 (ENSRFEG00010003298) #25	BEST3 (ENSRFEG00010003349) #26	RAB3IP (ENSRFEG00010003411) #27	MYRFL (ENSRFEG00010003520) #28	ENSRFEG00010003596	CNOT2 (ENSRFEG00010003667) #29	ENSRFEG00010003755 #30	PTPRB (ENSRFEG00010003840) #31	PTPRR (ENSRFEG00010003978) #32	TSPAN8 (ENSRFEG00010004017) #34	LGR5 (ENSRFEG00010004053) #35	ZFC3H1 (ENSRFEG00010004111) #37	THAP2 (ENSRFEG00010004206)
Microbat	MODERN SPECIES	1093															ENSMLUG00000028613	YEATS4 (ENSMLUG00000009373) #22	FRS2 (ENSMLUG00000003598) #23	CCT2 (ENSMLUG00000008364) #24	LRRC10 (ENSMLUG00000004678) #25	BEST3 (ENSMLUG00000008396) #26	RAB3IP (ENSMLUG00000008432) #27	MYRFL (ENSMLUG00000009508) #28	ENSMLUG00000003197	CNOT2 (ENSMLUG00000012301) #29	KCNMB4 (ENSMLUG00000024629) #30	PTPRB (ENSMLUG00000006876) #31	PTPRR (ENSMLUG00000006921) #32	ENSMLUG00000004178 #21	ENSMLUG00000024703	TSPAN8 (ENSMLUG00000005703) #34	LGR5 (ENSMLUG00000011694) #35
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000155811 #22
Hedgehog	MODERN SPECIES	2592																YEATS4 (ENSEEUG00000003116) #22
Common shrew	MODERN SPECIES	8612																YEATS4 (ENSSARG00000001246) #22
Atlantogenata	ANCESTRAL SPECIES	16	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Afrotheria	ANCESTRAL SPECIES	8	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00950000183124.B	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Afrotheria_a	ANCESTRAL SPECIES	8	ENSGT00940000161222	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Elephant	MODERN SPECIES	196	DYRK2 (ENSLAFG00000004507) #8	IFNG (ENSLAFG00000004484) #9	ENSLAFG00000025635 #10	ENSLAFG00000028796 #10	ENSLAFG00000025856 #10	MDM1 (ENSLAFG00000002099) #11	RAP1B (ENSLAFG00000016460) #12	NUP107 (ENSLAFG00000015798) #13	SLC35E3 (ENSLAFG00000015812) #14	MDM2 (ENSLAFG00000005885) #15	CPM (ENSLAFG00000016809) #16	CPSF6 (ENSLAFG00000030413) #17	ENSLAFG00000000591 #21	ENSLAFG00000026760 #21	ENSLAFG00000006201 #21	YEATS4 (ENSLAFG00000000573) #22	FRS2 (ENSLAFG00000015074) #23	ENSLAFG00000006688 #24	LRRC10 (ENSLAFG00000006695) #25	BEST3 (ENSLAFG00000000929) #26	RAB3IP (ENSLAFG00000000932) #27	MYRFL (ENSLAFG00000001286) #28	CNOT2 (ENSLAFG00000004789) #29	KCNMB4 (ENSLAFG00000004791) #30	PTPRB (ENSLAFG00000004794) #31	PTPRR (ENSLAFG00000004800) #32	TSPAN8 (ENSLAFG00000018132) #34	LGR5 (ENSLAFG00000005815) #35	ZFC3H1 (ENSLAFG00000005820) #37	TMEM19 (ENSLAFG00000005940)	RAB21 (ENSLAFG00000012774)
Hyrax	MODERN SPECIES	16															ENSPCAG00000011609 #21	YEATS4 (ENSPCAG00000011639) #22
Tenrec	MODERN SPECIES	2486																YEATS4 (ENSETEG00000010793) #22
Xenarthra	ANCESTRAL SPECIES	881															ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000164030	ENSGT00940000157777 #26
Sloth	MODERN SPECIES	2228																YEATS4 (ENSCHOG00000008733) #22
Armadillo	MODERN SPECIES	4642												ENSDNOG00000032401 #21	ENSDNOG00000047881	ENSDNOG00000010920 #21	ENSDNOG00000045666 #21	YEATS4 (ENSDNOG00000007960) #22	FRS2 (ENSDNOG00000007262) #23	CCT2 (ENSDNOG00000017773) #24	ENSDNOG00000015832	BEST3 (ENSDNOG00000009799) #26
Marsupialia	ANCESTRAL SPECIES	11	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00960000187820	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000160666.e	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.vb.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088	ENSGT00390000017998
Opossum	MODERN SPECIES	7	ENSMODG00000050222	ENSMODG00000042214	ENSMODG00000018028	ENSMODG00000008606	ENSMODG00000025178	ENSMODG00000028145	ENSMODG00000040465	ENSMODG00000028539	ENSMODG00000027554	monDomV1R1281 (ENSMODG00000046750)	monDomV1R1282 (ENSMODG00000038638)	ENSMODG00000049205	ENSMODG00000025201	monDomV1R1283 (ENSMODG00000018037)	ENSMODG00000025297 #21	YEATS4 (ENSMODG00000050055) #22	FRS2 (ENSMODG00000051335) #23	CCT2 (ENSMODG00000020380) #24	ENSMODG00000025136	BEST3 (ENSMODG00000020381) #26	RAB3IP (ENSMODG00000020383) #27	MYRFL (ENSMODG00000020385) #28	CNOT2 (ENSMODG00000020387) #29	KCNMB4 (ENSMODG00000020388) #30	ENSMODG00000036372	PTPRB (ENSMODG00000020392) #31	PTPRR (ENSMODG00000020393) #32	ENSMODG00000049852	ENSMODG00000037552	ENSMODG00000020396 #34	LGR5 (ENSMODG00000020406) #35
Marsupialia_b	ANCESTRAL SPECIES	13	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00960000187820	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000160666.e	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.vb.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.i #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088.k	ENSGT00390000017998
Diprotodontia	ANCESTRAL SPECIES	8	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00960000187820	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000160666.e	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.vb.b #15	ENSGT00940000158580 #16	ENSGT00990000204372	ENSGT00730000110905.b #17	ENSGT00940000153832.f.i.b #21	ENSGT00940000153832.f.i.a #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088.k	ENSGT00390000017998
Diprotodontia_a	ANCESTRAL SPECIES	8	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00960000187820	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000160666.e	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b.vb.b #15	ENSGT00940000158580 #16	ENSGT00990000204372	ENSGT00730000110905.b #17	ENSGT00940000153832.f.i.b.b #21	ENSGT00940000153832.f.i.a #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088.k	ENSGT00390000017998
koala	MODERN SPECIES	37	ENSPCIG00000024452	ENSPCIG00000024451 #10	ENSPCIG00000037132	MDM1 (ENSPCIG00000025044) #11	CLEC4E (ENSPCIG00000031735)	RAP1B (ENSPCIG00000025046) #12	NUP107 (ENSPCIG00000005307) #13	SLC35E3 (ENSPCIG00000005345) #14	ENSPCIG00000005357 #15	ENSPCIG00000032112 #15	CPM (ENSPCIG00000005367) #16	ENSPCIG00000019064	CPSF6 (ENSPCIG00000019063) #17	ENSPCIG00000016204 #21	ENSPCIG00000032885 #21	YEATS4 (ENSPCIG00000029194) #22	FRS2 (ENSPCIG00000029196) #23	CCT2 (ENSPCIG00000009428) #24	ENSPCIG00000009433	ENSPCIG00000036073	BEST3 (ENSPCIG00000014929) #26	RAB3IP (ENSPCIG00000014925) #27	MYRFL (ENSPCIG00000014918) #28	CNOT2 (ENSPCIG00000010670) #29	KCNMB4 (ENSPCIG00000010679) #30	PTPRB (ENSPCIG00000010692) #31	PTPRR (ENSPCIG00000010723) #32	TSPAN8 (ENSPCIG00000016756) #34
Common wonbat	MODERN SPECIES	135	C12orf75 (ENSVURG00010005309)	APPL2 (ENSVURG00010005325)	WASHC4 (ENSVURG00010005369)	ALDH1L2 (ENSVURG00010005390)	SLC41A2 (ENSVURG00010005434)	CHST11 (ENSVURG00010005449)	ENSVURG00010005457	TXNRD1 (ENSVURG00010005470)	NFYB (ENSVURG00010005503)	HCFC2 (ENSVURG00010005546)	GLT8D2 (ENSVURG00010005569)	ENSVURG00010005582	HSP90B1 (ENSVURG00010005586)	ENSVURG00010005625 #21	ENSVURG00010005629 #21	YEATS4 (ENSVURG00010005634) #22	FRS2 (ENSVURG00010005643) #23	CCT2 (ENSVURG00010005652) #24	LRRC10 (ENSVURG00010005672) #25	BEST3 (ENSVURG00010005680) #26	RAB3IP (ENSVURG00010005696) #27	ENSVURG00010005737 #28	CNOT2 (ENSVURG00010005783) #29	KCNMB4 (ENSVURG00010005866) #30	PTPRB (ENSVURG00010005906) #31	PTPRR (ENSVURG00010006091) #32	TSPAN8 (ENSVURG00010006449) #34	LGR5 (ENSVURG00010006466) #35	ZFC3H1 (ENSVURG00010006538) #37	THAP2 (ENSVURG00010006897)	TMEM19 (ENSVURG00010006901)
Tasmanian devil	MODERN SPECIES	4	ENSSHAG00000023475	CAND1 (ENSSHAG00000001811) #7	DYRK2 (ENSSHAG00000012724) #8	ENSSHAG00000015036 #9	ENSSHAG00000026365 #10	MDM1 (ENSSHAG00000002605) #11	ENSSHAG00000005114	RAP1B (ENSSHAG00000011497) #12	NUP107 (ENSSHAG00000010817) #13	SLC35E3 (ENSSHAG00000030047) #14	ENSSHAG00000000124 #15	CPM (ENSSHAG00000009724) #16	CPSF6 (ENSSHAG00000006635) #17	ENSSHAG00000031028	ENSSHAG00000004818 #21	YEATS4 (ENSSHAG00000027594) #22	FRS2 (ENSSHAG00000025100) #23	CCT2 (ENSSHAG00000005384) #24	LRRC10 (ENSSHAG00000005775) #25	BEST3 (ENSSHAG00000006449) #26	ENSSHAG00000008556 #27	ENSSHAG00000007145	ZCRB1 (ENSSHAG00000006273)	ENSSHAG00000026064	ENSSHAG00000001702	ENSSHAG00000016997	ENSSHAG00000016549	ENSSHAG00000021585	ENSSHAG00000015623	ENSSHAG00000015274	ENSSHAG00000014754
Platypus	MODERN SPECIES	5	GRIP1 (ENSOANG00000005925)	CAND1 (ENSOANG00000005930) #7	DYRK2 (ENSOANG00000005931) #8	ENSOANG00000005932 #9	ENSOANG00000005933 #10	MDM1 (ENSOANG00000005935) #11	RAP1B (ENSOANG00000005936) #12	NUP107 (ENSOANG00000005937) #13	ENSOANG00000037006 #14	HAUS3 (ENSOANG00000005940)	ENSOANG00000036214 #15	ENSOANG00000050152 #15	CPM (ENSOANG00000005943) #16	CPSF6 (ENSOANG00000005944) #17	LYZ (ENSOANG00000005945) #21	YEATS4 (ENSOANG00000005946) #22	FRS2 (ENSOANG00000005947) #23	CCT2 (ENSOANG00000005950) #24	LRRC10 (ENSOANG00000041621) #25	ENSOANG00000005955	BEST3 (ENSOANG00000005956) #26	RAB3IP (ENSOANG00000005957) #27	ENSOANG00000005958 #28	CNOT2 (ENSOANG00000005959) #29	ENSOANG00000047318 #30	PTPRB (ENSOANG00000005962) #31	PTPRR (ENSOANG00000005963) #32	ENSOANG00000021316 #34	LGR5 (ENSOANG00000003010) #35	ZFC3H1 (ENSOANG00000008402) #37	THAP2 (ENSOANG00000043184)
Sauria	ANCESTRAL SPECIES	4	ENSGT00390000017740.b ##7	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT01030000235106	ENSGT00990000204372	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT01040000241180	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37
Archelosauria	ANCESTRAL SPECIES	3	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT01030000235106	ENSGT00990000204372	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088
Cryptodira	ANCESTRAL SPECIES	11	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.g.b #21	ENSGT00940000153832.f.g.a #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088
Testudinoidea	ANCESTRAL SPECIES	4	ENSGT01050000244940.b	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.g.b.a #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088
Emydidae	ANCESTRAL SPECIES	10	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f.g.a.a #21	ENSGT00940000153832.f.g.b.a.b.a #21	ENSGT00940000153832.f.g.b.a.a #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088
Three-toed box turtle	MODERN SPECIES	28	CAND1 (ENSTMTG00000015830) #7	DYRK2 (ENSTMTG00000016532) #8	IFNG (ENSTMTG00000016545) #9	ENSTMTG00000016567 #10	IL22 (ENSTMTG00000016590) #10	MDM1 (ENSTMTG00000016609) #11	RAP1B (ENSTMTG00000016644) #12	NUP107 (ENSTMTG00000016669) #13	SLC35E3 (ENSTMTG00000016720) #14	MDM2 (ENSTMTG00000016735) #15	CPM (ENSTMTG00000016786) #16	CPSF6 (ENSTMTG00000016933) #17	ENSTMTG00000016977 #21	ENSTMTG00000017006 #21	ENSTMTG00000017019 #21	YEATS4 (ENSTMTG00000017033) #22	FRS2 (ENSTMTG00000017058) #23	CCT2 (ENSTMTG00000017067) #24	LRRC10 (ENSTMTG00000017095) #25	ENSTMTG00000017097 #26	RAB3IP (ENSTMTG00000017102) #27	CNOT2 (ENSTMTG00000017123) #29	KCNMB4 (ENSTMTG00000017161) #30	PTPRB (ENSTMTG00000017186) #31	PTPRR (ENSTMTG00000017298) #32	TSPAN8 (ENSTMTG00000017335) #34	LGR5 (ENSTMTG00000017374) #35	ZFC3H1 (ENSTMTG00000017578) #37	THAP2 (ENSTMTG00000017633)	RAB21 (ENSTMTG00000017643)	TBC1D15 (ENSTMTG00000017674)
painted turtle	MODERN SPECIES	799	RAP1B (ENSCPBG00000013310) #12	NUP107 (ENSCPBG00000013313) #13	SLC35E3 (ENSCPBG00000013314) #14	MDM2 (ENSCPBG00000013316) #15	ENSCPBG00000013318	CPM (ENSCPBG00000013319) #16	CPSF6 (ENSCPBG00000013322) #17	ENSCPBG00000013324 #21	ENSCPBG00000013325 #21	ENSCPBG00000013326	ENSCPBG00000013327	ENSCPBG00000013328 #21	ENSCPBG00000013329 #21	ENSCPBG00000013352 #21	ENSCPBG00000013355 #21	YEATS4 (ENSCPBG00000013358) #22	FRS2 (ENSCPBG00000013360) #23	CCT2 (ENSCPBG00000013364) #24	ENSCPBG00000013367	ENSCPBG00000013369	BEST3 (ENSCPBG00000013373) #26	RAB3IP (ENSCPBG00000013379) #27	MYRFL (ENSCPBG00000013383) #28	CNOT2 (ENSCPBG00000013399) #29	KCNMB4 (ENSCPBG00000013411) #30	PTPRB (ENSCPBG00000013418) #31	PTPRR (ENSCPBG00000013435) #32	LGR5 (ENSCPBG00000013441) #35	ZFC3H1 (ENSCPBG00000013449) #37	THAP2 (ENSCPBG00000013456)	TMEM19 (ENSCPBG00000013460)
Testudinidae	ANCESTRAL SPECIES	12	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00940000158580 #16	ENSGT00530000063539.b.e.a #15	ENSGT00990000204372	ENSGT00730000110905.b #17	ENSGT00940000153832.f.g.b.a #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998.c #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00940000161088
Abingdon island giant tortoise	MODERN SPECIES	1957						IL22 (ENSCABG00000016584) #10	MDM1 (ENSCABG00000016582) #11	RAP1B (ENSCABG00000016474) #12	NUP107 (ENSCABG00000015695) #13	SLC35E3 (ENSCABG00000015635) #14	ENSCABG00000015634	ENSCABG00000015632 #15	ENSCABG00000015630	CPSF6 (ENSCABG00000015591) #17	LYZ (ENSCABG00000015586) #21	YEATS4 (ENSCABG00000015531) #22	FRS2 (ENSCABG00000015529) #23	CCT2 (ENSCABG00000014890) #24	LRRC10 (ENSCABG00000014878) #25	ENSCABG00000014877	ENSCABG00000014875 #26	ENSCABG00000014873 #27	ENSCABG00000014870 #27	MYRFL (ENSCABG00000014862) #28
Goode s thornscrub tortoise	MODERN SPECIES		HELB (ENSGEVG00005002386)	GRIP1 (ENSGEVG00005002355)	CAND1 (ENSGEVG00005002213) #7	DYRK2 (ENSGEVG00005002139) #8	ENSGEVG00005002121 #9	IL22 (ENSGEVG00005002098) #10	MDM1 (ENSGEVG00005002077) #11	RAP1B (ENSGEVG00005002055) #12	NUP107 (ENSGEVG00005001997) #13	SLC35E3 (ENSGEVG00005001975) #14	CPM (ENSGEVG00005001916) #16	ENSGEVG00005001844 #15	ENSGEVG00005001822	CPSF6 (ENSGEVG00005001802) #17	LYZ (ENSGEVG00005001779) #21	YEATS4 (ENSGEVG00005001761) #22	FRS2 (ENSGEVG00005001752) #23	CCT2 (ENSGEVG00005001735) #24	ENSGEVG00005001717	LRRC10 (ENSGEVG00005001709) #25	ENSGEVG00005001689	ENSGEVG00005001670 #26	ENSGEVG00005001662 #27	ENSGEVG00005001644 #27	MYRFL (ENSGEVG00005001610) #28	ENSGEVG00005001571	CNOT2 (ENSGEVG00005001515) #29	KCNMB4 (ENSGEVG00005001485) #30	PTPRB (ENSGEVG00005000886) #31	PTPRR (ENSGEVG00005000615) #32	TSPAN8 (ENSGEVG00005000591) #34
Chinese turtle	MODERN SPECIES	967		CAND1 (ENSPSIG00000016805) #7	DYRK2 (ENSPSIG00000016789) #8	IFNG (ENSPSIG00000016750) #9	ENSPSIG00000016740 #10	IL22 (ENSPSIG00000016713) #10	MDM1 (ENSPSIG00000016538) #11	RAP1B (ENSPSIG00000016506) #12	NUP107 (ENSPSIG00000016472) #13	SLC35E3 (ENSPSIG00000016463) #14	ENSPSIG00000016379 #15	CPM (ENSPSIG00000016368) #16	CPSF6 (ENSPSIG00000016360) #17	ENSPSIG00000016201 #21	ENSPSIG00000016197 #21	YEATS4 (ENSPSIG00000016163) #22	FRS2 (ENSPSIG00000016159) #23	CCT2 (ENSPSIG00000015944) #24	ENSPSIG00000001692	ENSPSIG00000015907	BEST3 (ENSPSIG00000015866) #26	RAB3IP (ENSPSIG00000015855) #27	ENSPSIG00000015850	ENSPSIG00000015844 #28	CNOT2 (ENSPSIG00000015414) #29	KCNMB4 (ENSPSIG00000015398) #30	PTPRB (ENSPSIG00000014850) #31	PTPRR (ENSPSIG00000014304) #32	TSPAN8 (ENSPSIG00000014181) #34	LGR5 (ENSPSIG00000013834) #35	ZFC3H1 (ENSPSIG00000012997) #37
Archosauria	ANCESTRAL SPECIES	4	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00960000189680	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00990000204372	ENSGT01030000235106	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00390000017998
Aves	ANCESTRAL SPECIES	1	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00960000189680	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00990000204372	ENSGT01030000235106	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00390000017998
Neognathae	ANCESTRAL SPECIES	3	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00960000189680	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00990000204372	ENSGT01030000235106	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00390000017998
Galloanserae	ANCESTRAL SPECIES	3	ENSGT00390000006913	ENSGT00950000185293	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00390000017998
Anatidae	ANCESTRAL SPECIES	14	ENSGT00390000006913	ENSGT00950000185293	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT01030000235106	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00390000017998
Pink-footed goose	MODERN SPECIES	36			CAND1 (ENSABRG00000022151) #7	DYRK2 (ENSABRG00000022156) #8	IFNG (ENSABRG00000022157) #9	ENSABRG00000022159 #10	IL22 (ENSABRG00000022160) #10	MDM1 (ENSABRG00000022161) #11	RAP1B (ENSABRG00000022163) #12	NUP107 (ENSABRG00000022164) #13	SLC35E3 (ENSABRG00000022166) #14	MDM2 (ENSABRG00000022167) #15	CPM (ENSABRG00000022168) #16	ENSABRG00000022170	LYZ (ENSABRG00000022172) #21	YEATS4 (ENSABRG00000022173) #22	FRS2 (ENSABRG00000022175) #23	CCT2 (ENSABRG00000022176) #24	LRRC10 (ENSABRG00000022178) #25	ENSABRG00000022179	BEST3 (ENSABRG00000022180) #26	RAB3IP (ENSABRG00000000759) #27	MYRFL (ENSABRG00000000803) #28	CNOT2 (ENSABRG00000000842) #29	KCNMB4 (ENSABRG00000000997) #30	PTPRB (ENSABRG00000001025) #31	PTPRR (ENSABRG00000001250) #32	TSPAN8 (ENSABRG00000001313) #34	LGR5 (ENSABRG00000001360) #35	ZFC3H1 (ENSABRG00000001454) #37	TMEM19 (ENSABRG00000001661)
Duck	MODERN SPECIES		ENSAPLG00000030893	GRIP1 (ENSAPLG00000013466)	CAND1 (ENSAPLG00000012973) #7	DYRK2 (ENSAPLG00000001626) #8	IFNG (ENSAPLG00000012876) #9	ENSAPLG00000026064 #10	IL22 (ENSAPLG00000012808) #10	MDM1 (ENSAPLG00000012567) #11	RAP1B (ENSAPLG00000012353) #12	NUP107 (ENSAPLG00000011758) #13	SLC35E3 (ENSAPLG00000011368) #14	CPM (ENSAPLG00000011100) #16	ENSAPLG00000018823 #15	ENSAPLG00000011164 #15	ENSAPLG00000010887	YEATS4 (ENSAPLG00000013248) #22	FRS2 (ENSAPLG00000013238) #23	CCT2 (ENSAPLG00000013136) #24	LRRC10 (ENSAPLG00000001400) #25	ENSAPLG00000013049	BEST3 (ENSAPLG00000012990) #26	RAB3IP (ENSAPLG00000012894) #27	MYRFL (ENSAPLG00000012837) #28	CNOT2 (ENSAPLG00000012657) #29	KCNMB4 (ENSAPLG00000013389) #30	ENSAPLG00000023725	PTPRB (ENSAPLG00000013391) #31	PTPRR (ENSAPLG00000014776) #32	TSPAN8 (ENSAPLG00000015637) #34	LGR5 (ENSAPLG00000015737) #35	ENSAPLG00000016116 #37
Phasianidae	ANCESTRAL SPECIES		ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT01030000235106	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00390000017998
Phasianidae_b	ANCESTRAL SPECIES	9	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT01030000235106	ENSGT00730000110905.b #17	ENSGT00940000153832.f #21	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00390000017998
Chicken	MODERN SPECIES		HELB (ENSGALG00010012090)	GRIP1 (ENSGALG00010012122)	CAND1 (ENSGALG00010011888) #7	DYRK2 (ENSGALG00010011926) #8	IFNG (ENSGALG00010011933) #9	IL26 (ENSGALG00010011940) #10	IL22 (ENSGALG00010012472) #10	MDM1 (ENSGALG00010012508) #11	RAP1B (ENSGALG00010012538) #12	NUP107 (ENSGALG00010012600) #13	SLC35E3 (ENSGALG00010012662) #14	MDM2 (ENSGALG00010012683) #15	CPM (ENSGALG00010012705) #16	CPSF6 (ENSGALG00010011962)	LYZ (ENSGALG00010011983) #21	YEATS4 (ENSGALG00010011992) #22	FRS2 (ENSGALG00010013280) #23	CCT2 (ENSGALG00010011871) #24	LRRC10 (ENSGALG00010014235) #25	CTSEAL (ENSGALG00010012182)	BEST3 (ENSGALG00010012191) #26	RAB3IP (ENSGALG00010012133) #27	MYRFL (ENSGALG00010012151) #28	CNOT2 (ENSGALG00010012172) #29	KCNMB4 (ENSGALG00010011841) #30	PTPRB (ENSGALG00010013259) #31	PTPRR (ENSGALG00010013268) #32	TSPAN8 (ENSGALG00010011994) #34	LGR5 (ENSGALG00010012004) #35	ZFC3H1 (ENSGALG00010011696) #37	TMEM19 (ENSGALG00010012734)
Turkey	MODERN SPECIES		HELB (ENSMGAG00000010339)	GRIP1 (ENSMGAG00000010371)	CAND1 (ENSMGAG00000010381) #7	DYRK2 (ENSMGAG00000010401) #8	IFNG (ENSMGAG00000010404) #9	ENSMGAG00000010422 #10	IL22 (ENSMGAG00000020113) #10	MDM1 (ENSMGAG00000010433) #11	RAP1B (ENSMGAG00000018591) #12	NUP107 (ENSMGAG00000010472) #13	SLC35E3 (ENSMGAG00000010509) #14	MDM2 (ENSMGAG00000010513) #15	CPM (ENSMGAG00000010537) #16	CPSF6 (ENSMGAG00000010552) #17	LYZ (ENSMGAG00000010559) #21	YEATS4 (ENSMGAG00000010581) #22	FRS2 (ENSMGAG00000010586) #23	CCT2 (ENSMGAG00000014712) #24	ENSMGAG00000015473	RAB3IP (ENSMGAG00000010595) #27	BEST3 (ENSMGAG00000014714) #26	MYRFL (ENSMGAG00000010606) #28	CNOT2 (ENSMGAG00000010615) #29	PTPRB (ENSMGAG00000010645) #31	PTPRR (ENSMGAG00000010655) #32	TSPAN8 (ENSMGAG00000010677) #34	LGR5 (ENSMGAG00000010694) #35	ZFC3H1 (ENSMGAG00000010716) #37	TMEM19 (ENSMGAG00000010731)	RAB21 (ENSMGAG00000010770)	TBC1D15 (ENSMGAG00000010741)
Japanese quail	MODERN SPECIES		GRIP1 (ENSCJPG00005015807)	ENSCJPG00005015814	CAND1 (ENSCJPG00005015816) #7	DYRK2 (ENSCJPG00005015818) #8	ENSCJPG00005015874 #9	ENSCJPG00005015876 #10	IL22 (ENSCJPG00005015878) #10	MDM1 (ENSCJPG00005015882) #11	RAP1B (ENSCJPG00005015892) #12	NUP107 (ENSCJPG00005015894) #13	SLC35E3 (ENSCJPG00005015896) #14	MDM2 (ENSCJPG00005015899) #15	CPM (ENSCJPG00005015955) #16	ENSCJPG00005015956	LYZ (ENSCJPG00005015957) #21	YEATS4 (ENSCJPG00005015958) #22	FRS2 (ENSCJPG00005016004) #23	CCT2 (ENSCJPG00005016006) #24	LRRC10 (ENSCJPG00005016008) #25	ENSCJPG00005016009	BEST3 (ENSCJPG00005016010) #26	RAB3IP (ENSCJPG00005016035) #27	MYRFL (ENSCJPG00005016037) #28	CNOT2 (ENSCJPG00005016043) #29	KCNMB4 (ENSCJPG00005016047) #30	PTPRB (ENSCJPG00005016061) #31	PTPRR (ENSCJPG00005016064) #32	TSPAN8 (ENSCJPG00005016081) #34	LGR5 (ENSCJPG00005016087) #35	ZFC3H1 (ENSCJPG00005016088) #37	TMEM19 (ENSCJPG00005016089)
Neognathae_b	ANCESTRAL SPECIES	2	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00960000189680	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00990000204372	ENSGT01030000235106	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00390000017998
Passeriformes	ANCESTRAL SPECIES	3	ENSGT01050000244940.b	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00960000189680	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT01030000235106	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00390000017998
Passeriformes_d	ANCESTRAL SPECIES	3	ENSGT01050000244940.b	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00960000189680	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT01030000235106	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00390000017998
Flycatcher	MODERN SPECIES	10	HMGA2 (ENSFALG00000010016)	LLPH (ENSFALG00000024250)	TMBIM4 (ENSFALG00000010032)	HELB (ENSFALG00000010025)	GRIP1 (ENSFALG00000010045)	CAND1 (ENSFALG00000010066) #7	IFNG (ENSFALG00000010070) #9	IL22 (ENSFALG00000010083) #10	MDM1 (ENSFALG00000010095) #11	RAP1B (ENSFALG00000010112) #12	NUP107 (ENSFALG00000010127) #13	SLC35E3 (ENSFALG00000026526) #14	MDM2 (ENSFALG00000010140) #15	CPM (ENSFALG00000010144) #16	ENSFALG00000010157	YEATS4 (ENSFALG00000010173) #22	FRS2 (ENSFALG00000010177) #23	CCT2 (ENSFALG00000010198) #24	LRRC10 (ENSFALG00000014714) #25	ENSFALG00000010223	BEST3 (ENSFALG00000010227) #26	RAB3IP (ENSFALG00000010230) #27	MYRFL (ENSFALG00000010237) #28	CNOT2 (ENSFALG00000010251) #29	KCNMB4 (ENSFALG00000010256) #30	PTPRB (ENSFALG00000010260) #31	PTPRR (ENSFALG00000010278) #32	TSPAN8 (ENSFALG00000010298) #34	LGR5 (ENSFALG00000010309) #35	ZFC3H1 (ENSFALG00000010320) #37	TMEM19 (ENSFALG00000010328)
Passeriformes_g	ANCESTRAL SPECIES	4	ENSGT01050000244940.b	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00960000189680	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT01030000235106	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00390000017998
Passeroidea	ANCESTRAL SPECIES	3	ENSGT00390000012979	ENSGT01050000244940.b	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT01030000235106	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00390000017998
Zebra finch	MODERN SPECIES	11	LLPH (ENSTGUG00000022709)	TMBIM4 (ENSTGUG00000006618)	HELB (ENSTGUG00000006632)	GRIP1 (ENSTGUG00000006648)	CAND1 (ENSTGUG00000006691) #7	DYRK2 (ENSTGUG00000006720) #8	IFNG (ENSTGUG00000023237) #9	IL22 (ENSTGUG00000006732) #10	MDM1 (ENSTGUG00000006738) #11	RAP1B (ENSTGUG00000026063) #12	NUP107 (ENSTGUG00000006761) #13	SLC35E3 (ENSTGUG00000006828) #14	MDM2 (ENSTGUG00000021274) #15	CPM (ENSTGUG00000006875) #16	ENSTGUG00000006884	YEATS4 (ENSTGUG00000006894) #22	FRS2 (ENSTGUG00000006906) #23	CCT2 (ENSTGUG00000006912) #24	LRRC10 (ENSTGUG00000024092) #25	ENSTGUG00000006960	BEST3 (ENSTGUG00000006968) #26	RAB3IP (ENSTGUG00000006982) #27	ENSTGUG00000007004 #28	CNOT2 (ENSTGUG00000007018) #29	KCNMB4 (ENSTGUG00000007043) #30	PTPRB (ENSTGUG00000007051) #31	PTPRR (ENSTGUG00000007124) #32	TSPAN8 (ENSTGUG00000007160) #34	LGR5 (ENSTGUG00000007177) #35	ZFC3H1 (ENSTGUG00000007206) #37	TMEM19 (ENSTGUG00000007240)
Common canary	MODERN SPECIES	6	TES (ENSSCAG00000009450)	TFEC (ENSSCAG00000009440)	MDFIC (ENSSCAG00000009429)	FOXP2 (ENSSCAG00000009355)	ENSSCAG00000009306	PPP1R3A (ENSSCAG00000009300)	GPR85 (ENSSCAG00000009290)	BMT2 (ENSSCAG00000009277)	TMEM168 (ENSSCAG00000009271)	RAP1B (ENSSCAG00000009270) #12	NUP107 (ENSSCAG00000009262) #13	SLC35E3 (ENSSCAG00000009248) #14	MDM2 (ENSSCAG00000009237) #15	CPM (ENSSCAG00000009225) #16	ENSSCAG00000009212	YEATS4 (ENSSCAG00000009205) #22	FRS2 (ENSSCAG00000009197) #23	CCT2 (ENSSCAG00000009187) #24	LRRC10 (ENSSCAG00000009179) #25	ENSSCAG00000009173	ENSSCAG00000009171 #26	RAB3IP (ENSSCAG00000009162) #27	ENSSCAG00000009141 #28	CNOT2 (ENSSCAG00000009113) #29	KCNMB4 (ENSSCAG00000009102) #30	PTPRB (ENSSCAG00000009047) #31	PTPRR (ENSSCAG00000009016) #32	TSPAN8 (ENSSCAG00000009004) #34	LGR5 (ENSSCAG00000008995) #35	ZFC3H1 (ENSSCAG00000008973) #37	TMEM19 (ENSSCAG00000008969)
Medium ground finch	MODERN SPECIES	13	HELB (ENSGFOG00000001218)	GRIP1 (ENSGFOG00000001098)	CAND1 (ENSGFOG00000000766) #7	DYRK2 (ENSGFOG00000000281) #8	IFNG (ENSGFOG00000000086) #9	ENSGFOG00000007080	ENSGFOG00000007075	IL22 (ENSGFOG00000007065) #10	MDM1 (ENSGFOG00000007042) #11	RAP1B (ENSGFOG00000007034) #12	NUP107 (ENSGFOG00000006976) #13	SLC35E3 (ENSGFOG00000006925) #14	MDM2 (ENSGFOG00000006915) #15	CPM (ENSGFOG00000006904) #16	ENSGFOG00000006889	YEATS4 (ENSGFOG00000006879) #22	FRS2 (ENSGFOG00000006875) #23	CCT2 (ENSGFOG00000006858) #24	LRRC10 (ENSGFOG00000006851) #25	ENSGFOG00000006841	BEST3 (ENSGFOG00000006767) #26	RAB3IP (ENSGFOG00000006743) #27	ENSGFOG00000006734 #28	CNOT2 (ENSGFOG00000006721) #29	PTPRB (ENSGFOG00000006639) #31	PTPRR (ENSGFOG00000006611) #32	TSPAN8 (ENSGFOG00000006592) #34	LGR5 (ENSGFOG00000006574) #35	ZFC3H1 (ENSGFOG00000006221) #37	TMEM19 (ENSGFOG00000006172)	RAB21 (ENSGFOG00000006163)
Great tit	MODERN SPECIES	10	LLPH (ENSPMJG00000012604)	HELB (ENSPMJG00000012606)	GRIP1 (ENSPMJG00000012607)	CAND1 (ENSPMJG00000012608) #7	DYRK2 (ENSPMJG00000012609) #8	IFNG (ENSPMJG00000012612) #9	ENSPMJG00000012613 #10	IL22 (ENSPMJG00000012614) #10	MDM1 (ENSPMJG00000012615) #11	RAP1B (ENSPMJG00000012616) #12	NUP107 (ENSPMJG00000012617) #13	SLC35E3 (ENSPMJG00000012618) #14	MDM2 (ENSPMJG00000012619) #15	CPM (ENSPMJG00000012620) #16	ENSPMJG00000012621	YEATS4 (ENSPMJG00000012622) #22	FRS2 (ENSPMJG00000012623) #23	CCT2 (ENSPMJG00000012624) #24	LRRC10 (ENSPMJG00000012625) #25	ENSPMJG00000012626	BEST3 (ENSPMJG00000012627) #26	RAB3IP (ENSPMJG00000012628) #27	MYRFL (ENSPMJG00000012629) #28	CNOT2 (ENSPMJG00000012630) #29	KCNMB4 (ENSPMJG00000012632) #30	PTPRB (ENSPMJG00000012633) #31	PTPRR (ENSPMJG00000012635) #32	TSPAN8 (ENSPMJG00000012636) #34	LGR5 (ENSPMJG00000012637) #35	ZFC3H1 (ENSPMJG00000012638) #37	TMEM19 (ENSPMJG00000012639)
Neognathae_c	ANCESTRAL SPECIES		ENSGT01050000244940.b	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00990000204372	ENSGT01030000235106	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37	ENSGT00390000017998
Kakapo	MODERN SPECIES	20	HELB (ENSSHBG00005017784)	GRIP1 (ENSSHBG00005017940)	CAND1 (ENSSHBG00005019221) #7	ENSSHBG00005019237	DYRK2 (ENSSHBG00005019240) #8	IFNG (ENSSHBG00005019244) #9	IL22 (ENSSHBG00005019245) #10	MDM1 (ENSSHBG00005019251) #11	RAP1B (ENSSHBG00005019257) #12	NUP107 (ENSSHBG00005019259) #13	SLC35E3 (ENSSHBG00005019262) #14	MDM2 (ENSSHBG00005019264) #15	CPM (ENSSHBG00005019266) #16	ENSSHBG00005000892	ENSSHBG00005001402	YEATS4 (ENSSHBG00005001452) #22	FRS2 (ENSSHBG00005001488) #23	CCT2 (ENSSHBG00005001520) #24	LRRC10 (ENSSHBG00005001536) #25	ENSSHBG00005001556	ENSSHBG00005001580 #26	RAB3IP (ENSSHBG00005001609) #27	ENSSHBG00005001637 #28	CNOT2 (ENSSHBG00005001670) #29	KCNMB4 (ENSSHBG00005001717) #30	PTPRB (ENSSHBG00005002084) #31	PTPRR (ENSSHBG00005002566) #32	TSPAN8 (ENSSHBG00005003020) #34	LGR5 (ENSSHBG00005003044) #35	ZFC3H1 (ENSSHBG00005003094) #37	TMEM19 (ENSSHBG00005003147)
Golden eagle	MODERN SPECIES	18	LLPH (ENSACCG00020015890)	TMBIM4 (ENSACCG00020015879)	HELB (ENSACCG00020015855)	GRIP1 (ENSACCG00020015249)	CAND1 (ENSACCG00020014448) #7	DYRK2 (ENSACCG00020014255) #8	IFNG (ENSACCG00020014233) #9	IL22 (ENSACCG00020014206) #10	MDM1 (ENSACCG00020014184) #11	RAP1B (ENSACCG00020014145) #12	NUP107 (ENSACCG00020014081) #13	SLC35E3 (ENSACCG00020014052) #14	MDM2 (ENSACCG00020014010) #15	CPM (ENSACCG00020013978) #16	ENSACCG00020013949	YEATS4 (ENSACCG00020013911) #22	FRS2 (ENSACCG00020013888) #23	CCT2 (ENSACCG00020013859) #24	ENSACCG00020013836	ENSACCG00020013816	BEST3 (ENSACCG00020013791) #26	RAB3IP (ENSACCG00020013771) #27	ENSACCG00020013751 #28	CNOT2 (ENSACCG00020013733) #29	KCNMB4 (ENSACCG00020013717) #30	PTPRB (ENSACCG00020013288) #31	PTPRR (ENSACCG00020012595) #32	TSPAN8 (ENSACCG00020012538) #34	LGR5 (ENSACCG00020012150) #35	ZFC3H1 (ENSACCG00020011526) #37	TMEM19 (ENSACCG00020011479)
African ostrich	MODERN SPECIES	503	TMBIM4 (ENSSCUG00000004917)	HELB (ENSSCUG00000004912)	GRIP1 (ENSSCUG00000004893)	CAND1 (ENSSCUG00000004884) #7	DYRK2 (ENSSCUG00000004883) #8	IFNG (ENSSCUG00000004880) #9	ENSSCUG00000004878	IL22 (ENSSCUG00000004876) #10	MDM1 (ENSSCUG00000004874) #11	RAP1B (ENSSCUG00000004870) #12	NUP107 (ENSSCUG00000004811) #13	MDM2 (ENSSCUG00000004732) #15	CPM (ENSSCUG00000004728) #16	ENSSCUG00000004723	LYZ (ENSSCUG00000004719) #21	YEATS4 (ENSSCUG00000004717) #22
Australian saltwater crocodile	MODERN SPECIES	49	DYRK2 (ENSCPRG00005007307) #8	IFNG (ENSCPRG00005007257) #9	ENSCPRG00005007250	IL22 (ENSCPRG00005007241) #10	MDM1 (ENSCPRG00005007230) #11	RAP1B (ENSCPRG00005007204) #12	NUP107 (ENSCPRG00005007165) #13	SLC35E3 (ENSCPRG00005007146) #14	ENSCPRG00005007137 #15	ENSCPRG00005007133 #15	CPM (ENSCPRG00005007126) #16	ENSCPRG00005007107 #21	ENSCPRG00005007100	ENSCPRG00005007049 #21	ENSCPRG00005006933 #21	YEATS4 (ENSCPRG00005006924) #22	FRS2 (ENSCPRG00005006912) #23	CCT2 (ENSCPRG00005006898) #24	LRRC10 (ENSCPRG00005006896) #25	ENSCPRG00005006889	BEST3 (ENSCPRG00005006862) #26	RAB3IP (ENSCPRG00005006845) #27	ENSCPRG00005006839 #28	CNOT2 (ENSCPRG00005006803) #29	KCNMB4 (ENSCPRG00005006801) #30	PTPRB (ENSCPRG00005006780) #31	PTPRR (ENSCPRG00005006747) #32	TSPAN8 (ENSCPRG00005006727) #34	LGR5 (ENSCPRG00005006692) #35	ZFC3H1 (ENSCPRG00005006421) #37	TMEM19 (ENSCPRG00005006401)
Lepidosauria	ANCESTRAL SPECIES	3	ENSGT00940000158692	ENSGT00390000017740.b ##7	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT01030000235106	ENSGT00990000204372	ENSGT00730000110905.b #17	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT01040000241180	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37
tuatara	MODERN SPECIES	862									MDM1 (ENSSPUG00000000428) #11	RAP1B (ENSSPUG00000000465) #12	NUP107 (ENSSPUG00000000506) #13	SLC35E3 (ENSSPUG00000000870) #14	MDM2 (ENSSPUG00000000964) #15	CPM (ENSSPUG00000001021) #16	CPSF6 (ENSSPUG00000001238) #17	YEATS4 (ENSSPUG00000001283) #22	FRS2 (ENSSPUG00000001291) #23	CCT2 (ENSSPUG00000001321) #24	LRRC10 (ENSSPUG00000001334) #25	ENSSPUG00000001340	BEST3 (ENSSPUG00000001363) #26	ENSSPUG00000001409 #27	ENSSPUG00000001426 #27	ENSSPUG00000001414 #27	MYRFL (ENSSPUG00000001448) #28	ENSSPUG00000001538 #29	ENSSPUG00000001577 #29	KCNMB4 (ENSSPUG00000001592) #30	PTPRB (ENSSPUG00000001621) #31	PTPRR (ENSSPUG00000001780) #32	TSPAN8 (ENSSPUG00000001840) #34
Episquamata	ANCESTRAL SPECIES	3	ENSGT00940000158692	ENSGT00390000017740.b ##7	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT01030000235106	ENSGT00990000204372	ENSGT00730000110905.b #17	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT01040000241180	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37
Laterata	ANCESTRAL SPECIES	6	ENSGT00390000006913	ENSGT00940000158692	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00390000007831 #9	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT01030000235106	ENSGT00990000204372	ENSGT00730000110905.b #17	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT01040000241180	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	1	HELB (ENSPMRG00000017610)	GRIP1 (ENSPMRG00000017644)	ENSPMRG00000017718	CAND1 (ENSPMRG00000017724) #7	DYRK2 (ENSPMRG00000017761) #8	IFNG (ENSPMRG00000017766) #9	IL22 (ENSPMRG00000017767) #10	MDM1 (ENSPMRG00000017788) #11	RAP1B (ENSPMRG00000017830) #12	NUP107 (ENSPMRG00000017844) #13	SLC35E3 (ENSPMRG00000017867) #14	MDM2 (ENSPMRG00000017886) #15	ENSPMRG00000017919	ENSPMRG00000017923	CPSF6 (ENSPMRG00000017931) #17	ENSPMRG00000017945 #22	FRS2 (ENSPMRG00000017957) #23	CCT2 (ENSPMRG00000017964) #24	LRRC10 (ENSPMRG00000017974) #25	ENSPMRG00000017979	BEST3 (ENSPMRG00000017992) #26	RAB3IP (ENSPMRG00000018019) #27	MYRFL (ENSPMRG00000018030) #28	CNOT2 (ENSPMRG00000018049) #29	ENSPMRG00000018067	KCNMB4 (ENSPMRG00000018071) #30	PTPRB (ENSPMRG00000018091) #31	PTPRR (ENSPMRG00000018167) #32	TSPAN8 (ENSPMRG00000018173) #34	LGR5 (ENSPMRG00000018183) #35	ZFC3H1 (ENSPMRG00000018215) #37
Common wall lizard	MODERN SPECIES	16	ENSPMRG00000009165	ENSPMRG00000009158	LYPD3 (ENSPMRG00000009149)	ENSPMRG00000009147	ENSPMRG00000009144	ENSPMRG00000009141	ENSPMRG00000009122	ETHE1 (ENSPMRG00000009113)	ENSPMRG00000009105	XRCC1 (ENSPMRG00000009083)	ENSPMRG00000009072	ENSPMRG00000009068	ENSPMRG00000009059	ENSPMRG00000009047	ENSPMRG00000009043	ENSPMRG00000009036 #22	ENSPMRG00000009030	ENSPMRG00000009021	ENSPMRG00000009020	ENSPMRG00000009006	ENSPMRG00000009002	ENSPMRG00000008996	ENSPMRG00000008989	ENSPMRG00000008986	ENSPMRG00000008976	ZNF576 (ENSPMRG00000008963)	ENSPMRG00000008960	ENSPMRG00000008952	CADM4 (ENSPMRG00000008941)	RPS19 (ENSPMRG00000008934)	ENSPMRG00000008923
Argentine black and white tegu	MODERN SPECIES	15	ENSSMRG00000016110	TMBIM4 (ENSSMRG00000016111)	HELB (ENSSMRG00000016112)	GRIP1 (ENSSMRG00000016115)	CAND1 (ENSSMRG00000017089) #7	DYRK2 (ENSSMRG00000017090) #8	ENSSMRG00000017098	IL22 (ENSSMRG00000017107) #10	MDM1 (ENSSMRG00000017108) #11	RAP1B (ENSSMRG00000017114) #12	NUP107 (ENSSMRG00000017117) #13	SLC35E3 (ENSSMRG00000017120) #14	MDM2 (ENSSMRG00000017124) #15	CPM (ENSSMRG00000017127) #16	ENSSMRG00000017130	YEATS4 (ENSSMRG00000017134) #22	FRS2 (ENSSMRG00000017141) #23	CCT2 (ENSSMRG00000017142) #24	LRRC10 (ENSSMRG00000017143) #25	ENSSMRG00000017144	ENSSMRG00000017146 #26	RAB3IP (ENSSMRG00000017148) #27	MYRFL (ENSSMRG00000017153) #28	CNOT2 (ENSSMRG00000017170) #29	ENSSMRG00000017171	KCNMB4 (ENSSMRG00000017172) #30	PTPRB (ENSSMRG00000017173) #31	PTPRR (ENSSMRG00000017208) #32	TSPAN8 (ENSSMRG00000017214) #34	LGR5 (ENSSMRG00000017215) #35	ZFC3H1 (ENSSMRG00000017227) #37
Toxicofera	ANCESTRAL SPECIES	7	ENSGT00940000158692	ENSGT00390000017740.b ##7	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00960000191762	ENSGT00510000048550 #10	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00730000110905.b #17	ENSGT00990000204372	ENSGT01030000235106	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00530000063626.b #28	ENSGT00390000001285 #29	ENSGT01040000241180	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116 #37
Lizard	MODERN SPECIES	870	HELB (ENSACAG00000003554)	GRIP1 (ENSACAG00000003595)	CAND1 (ENSACAG00000003817) #7	DYRK2 (ENSACAG00000003898) #8	ENSACAG00000043930	IL22 (ENSACAG00000003906) #10	MDM1 (ENSACAG00000003908) #11	RAP1B (ENSACAG00000028906) #12	NUP107 (ENSACAG00000003987) #13	SLC35E3 (ENSACAG00000044741) #14	ENSACAG00000038937	MDM2 (ENSACAG00000004204) #15	ENSACAG00000041720	CPM (ENSACAG00000004335) #16	ENSACAG00000035833 #17	YEATS4 (ENSACAG00000004443) #22	FRS2 (ENSACAG00000004470) #23	CCT2 (ENSACAG00000004492) #24	LRRC10 (ENSACAG00000004609) #25	ENSACAG00000004614	BEST3 (ENSACAG00000004637) #26	RAB3IP (ENSACAG00000004695) #27	MYRFL (ENSACAG00000004738) #28	CNOT2 (ENSACAG00000004779) #29	ENSACAG00000044564	KCNMB4 (ENSACAG00000024463) #30
Elapidae	ANCESTRAL SPECIES	6	ENSGT00940000158692	ENSGT00390000017740.b ##7	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00960000191762	ENSGT01000000220826	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT00990000204372	ENSGT01030000235106	ENSGT00730000110905.b #17	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00390000001285 #29	ENSGT01040000241180	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B.b #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116.o #37	ENSGT00390000017998
Elapidae_a	ANCESTRAL SPECIES	1	ENSGT01050000244940.b.b	ENSGT00940000158692	ENSGT00390000017740.b ##7	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00960000191762	ENSGT01000000220826	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT01030000235106	ENSGT00730000110905.b #17	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B.b #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116.o #37	ENSGT00390000017998	ENSGT00940000156786
Acanthophiinae	ANCESTRAL SPECIES		ENSGT00390000012979	ENSGT01050000244940.b.b	ENSGT00940000158692	ENSGT00390000017740.b ##7	ENSGT00390000017740.a.a #7	ENSGT00940000158113 #8	ENSGT00960000191762	ENSGT01000000220826	ENSGT00390000004106 #11	ENSGT00940000154429 #12	ENSGT00390000012080 #13	ENSGT00730000111164 #14	ENSGT00530000063539.b #15	ENSGT00940000158580 #16	ENSGT01030000235106	ENSGT00940000155811 #22	ENSGT00940000157033 #23	ENSGT00550000074930 #24	ENSGT00940000155040.b #25	ENSGT00940000164590	ENSGT00940000157777 #26	ENSGT00940000157998 #27	ENSGT00390000001285 #29	ENSGT00950000183039.A #30	ENSGT00940000156088 #31	ENSGT00940000157212.B.b #32	ENSGT00940000158153 #34	ENSGT00940000160214 #35	ENSGT00390000001116.o #37	ENSGT00390000017998	ENSGT00940000156786
Eastern brown snake	MODERN SPECIES		MSRB3 (ENSPTXG00000007459)	ENSPTXG00000007458	LLPH (ENSPTXG00000007457)	TMBIM4 (ENSPTXG00000007456)	GRIP1 (ENSPTXG00000007454)	CAND1 (ENSPTXG00000007449) #7	DYRK2 (ENSPTXG00000007448) #8	ENSPTXG00000007446	MDM1 (ENSPTXG00000007443) #11	RAP1B (ENSPTXG00000007440) #12	NUP107 (ENSPTXG00000007437) #13	SLC35E3 (ENSPTXG00000007434) #14	ENSPTXG00000007432 #15	CPM (ENSPTXG00000007431) #16	ENSPTXG00000007429	YEATS4 (ENSPTXG00000007427) #22	FRS2 (ENSPTXG00000007425) #23	CCT2 (ENSPTXG00000007423) #24	ENSPTXG00000007422	ENSPTXG00000007421	BEST3 (ENSPTXG00000007419) #26	RAB3IP (ENSPTXG00000007417) #27	CNOT2 (ENSPTXG00000007413) #29	KCNMB4 (ENSPTXG00000007412) #30	PTPRB (ENSPTXG00000007408) #31	ENSPTXG00000007406 #32	ENSPTXG00000007405 #32	TSPAN8 (ENSPTXG00000007403) #34	LGR5 (ENSPTXG00000007401) #35	ZFC3H1 (ENSPTXG00000007399) #37	TMEM19 (ENSPTXG00000007397)
Mainland tiger snake	MODERN SPECIES	20	LLPH (ENSNSUG00000004162)	TMBIM4 (ENSNSUG00000004161)	GRIP1 (ENSNSUG00000004157)	ENSNSUG00000004155 ##7	CAND1 (ENSNSUG00000004151) #7	DYRK2 (ENSNSUG00000004149) #8	ENSNSUG00000004147	ENSNSUG00000004134	MDM1 (ENSNSUG00000004123) #11	RAP1B (ENSNSUG00000004122) #12	NUP107 (ENSNSUG00000004063) #13	SLC35E3 (ENSNSUG00000004056) #14	MDM2 (ENSNSUG00000004055) #15	CPM (ENSNSUG00000003809) #16	ENSNSUG00000003805	YEATS4 (ENSNSUG00000003800) #22	FRS2 (ENSNSUG00000003798) #23	CCT2 (ENSNSUG00000003795) #24	LRRC10 (ENSNSUG00000003793) #25	ENSNSUG00000003792	ENSNSUG00000003790 #26	RAB3IP (ENSNSUG00000003631) #27	CNOT2 (ENSNSUG00000003623) #29	KCNMB4 (ENSNSUG00000003620) #30	PTPRB (ENSNSUG00000003598) #31	PTPRR (ENSNSUG00000003549) #32	TSPAN8 (ENSNSUG00000003546) #34	ENSNSUG00000003544 #35	ZFC3H1 (ENSNSUG00000003323) #37	TMEM19 (ENSNSUG00000003322)	RAB21 (ENSNSUG00000003321)
Blue-lipped sea krait	MODERN SPECIES	3125															CPSF6 (ENSLLTG00000017689) #17	YEATS4 (ENSLLTG00000017691) #22
Indian cobra	MODERN SPECIES	6	PPHLN1 (ENSNNAG00000003204)	ENSNNAG00000003211	ENSNNAG00000003218	ENSNNAG00000003227	ZCRB1 (ENSNNAG00000003250)	YAF2 (ENSNNAG00000003292)	GXYLT1 (ENSNNAG00000003308)	ENSNNAG00000003327	MDM1 (ENSNNAG00000003362) #11	RAP1B (ENSNNAG00000003550) #12	SLC35E3 (ENSNNAG00000003574) #14	MDM2 (ENSNNAG00000003708) #15	CPM (ENSNNAG00000004534) #16	ENSNNAG00000004555	ENSNNAG00000004569	YEATS4 (ENSNNAG00000004591) #22	ENSNNAG00000004645	FRS2 (ENSNNAG00000004685) #23	CCT2 (ENSNNAG00000004714) #24	LRRC10 (ENSNNAG00000004782) #25	ENSNNAG00000004804	BEST3 (ENSNNAG00000004909) #26	RAB3IP (ENSNNAG00000004927) #27	CNOT2 (ENSNNAG00000004961) #29	ENSNNAG00000004994	KCNMB4 (ENSNNAG00000005005) #30	PTPRB (ENSNNAG00000005041) #31	PTPRR (ENSNNAG00000005313) #32	LGR5 (ENSNNAG00000005368) #35	ENSNNAG00000005409 #37	ENSNNAG00000005429 #37