Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	124	ENSGT00940000162969.j #10	ENSGT00550000075124.h #11	ENSGT01030000235056.a.a	ENSGT00390000009864.a #12	ENSGT00390000010577.a	ENSGT00950000183060.a.b.b.e #13	ENSGT00390000009228.a.b #14	ENSGT00940000157149.hb #15	ENSGT00940000162254.b.d	ENSGT00530000064557.a.h.b #16	ENSGT00940000165399.a.a.g.b	ENSGT00940000154967.a.b.a.a.e.a #17	ENSGT00940000163608.c #18	ENSGT00950000182979.a.b.b.b.a.d.b #19	ENSGT00940000163128.b.a #20	ENSGT00940000159109.a.a #22	ENSGT00940000167373.b #23	ENSGT01050000244961.b.g.a.a ##24	ENSGT01050000244893.c.b.a.g.a.b #25	ENSGT00390000007786.b.g.a	ENSGT00940000155556.d.sb.b #26	ENSGT00390000006753.A.a	ENSGT00940000166343.g #27	ENSGT00940000160411.i.b #28	ENSGT00940000167905.d #29	ENSGT00390000017736.a.j #30	ENSGT00940000158731.m #31	ENSGT00950000182932.A.b.b #32	ENSGT00940000155965.b.i.a #33	ENSGT00390000007165.a.a #34	ENSGT00940000160072.e #35
Cyprininae_a	ANCESTRAL SPECIES	6	ENSGT00550000075124.h #11	ENSGT01030000235056.a.a	ENSGT00390000009864.a #12	ENSGT00390000010577.a	ENSGT00950000183060.a.b.b.e #13	ENSGT00390000009228.a.b #14	ENSGT00940000157149.hb #15	ENSGT00940000162254.b.d	ENSGT00530000064557.a.h.b #16	ENSGT00940000165399.a.a.g.b	ENSGT00940000154967.a.b.a.a.f ##17	ENSGT00940000154967.a.b.a.a.e.a #17	ENSGT00940000163608.c #18	ENSGT00950000182979.a.b.b.b.a.d.b #19	ENSGT00940000163128.b.a #20	ENSGT00940000159109.a.a #22	ENSGT00940000167373.b #23	ENSGT01050000244961.b.g.a.a ##24	ENSGT01050000244893.c.b.a.g.a.b #25	ENSGT00390000007786.b.g.a	ENSGT00940000155556.d.sb.b #26	ENSGT00390000006753.A.a	ENSGT00940000166343.g #27	ENSGT00940000160411.i.b #28	ENSGT00940000167905.d #29	ENSGT00390000017736.a.j #30	ENSGT00940000158731.m #31	ENSGT00950000182932.A.b.b #32	ENSGT00910000144307	ENSGT00940000155965.b.i.a #33	ENSGT00390000007165.a.a #34
Common carp reference	MODERN SPECIES	47	rcvrn2 (ENSCCRG00000001178) #7	ENSCCRG00000058707 #8	atg12 (ENSCCRG00000073200) #9	cdc42ep5 (ENSCCRG00000063157) #10	grwd1 (ENSCCRG00000034381) #11	flcn (ENSCCRG00000034164) #12	ENSCCRG00000055213 #13	josd2 (ENSCCRG00000029519) #14	ube2s (ENSCCRG00000064715) #15	ENSCCRG00000011282 #16	ntd5 (ENSCCRG00000045203) #17	ENSCCRG00000061057 #18	ENSCCRG00000045212 #19	pitpnc1b (ENSCCRG00000073111) #20	ENSCCRG00000054379 #21	ENSCCRG00000064760 #22	ENSCCRG00000067018 #23	ENSCCRG00000067765 #24	CACNG8 (ENSCCRG00000075546) #25	u2af2a (ENSCCRG00000007404) #26	ENSCCRG00000002837 #27	epn1a (ENSCCRG00000002874) #28	sbk3 (ENSCCRG00000057099) #29	mfap5 (ENSCCRG00000002916) #30	aicda (ENSCCRG00000002944) #31	nat14 (ENSCCRG00000002973) #32	ENSCCRG00000074630 #33	ENSCCRG00000060089 #34	rasip1 (ENSCCRG00000022130) #35	ENSCCRG00000061725 #36	ENSCCRG00000022108 #37
Golden-line barbel	MODERN SPECIES	372	grwd1 (ENSSGRG00000015095) #11	zgc:174888 (ENSSGRG00000015101)	flcn (ENSSGRG00000015116) #12	leng9 (ENSSGRG00000015218)	ENSSGRG00000015219 #13	josd2 (ENSSGRG00000015220) #14	ube2s (ENSSGRG00000015222) #15	ENSSGRG00000015224	ENSSGRG00000015225	ENSSGRG00000015226 #16	dbpb (ENSSGRG00000015227)	ntd5 (ENSSGRG00000015231) ##17	ENSSGRG00000015232 #18	ENSSGRG00000015234 #19	pitpnc1b (ENSSGRG00000015236) #20	ENSSGRG00000015237 #22	ENSSGRG00000015241 #23	CACNG7 (ENSSGRG00000015431) ##24	CACNG8 (ENSSGRG00000015432) #25	CACNG6 (ENSSGRG00000015433)	isoc2 (ENSSGRG00000015436)	ENSSGRG00000015437 #27	epn1a (ENSSGRG00000015439) #28	sbk3 (ENSSGRG00000015461) #29	mfap5 (ENSSGRG00000015462) #30	aicda (ENSSGRG00000015464) #31	nat14 (ENSSGRG00000015466) #32	ENSSGRG00000015469	ENSSGRG00000015471 #34	rasip1 (ENSSGRG00000015472) #35	cox6b2 (ENSSGRG00000015474)
Goldfish	MODERN SPECIES	7	cdc42ep5 (ENSCARG00000047822) #10	grwd1 (ENSCARG00000047827) #11	zgc:174888 (ENSCARG00000047872)	flcn (ENSCARG00000047931) #12	leng9 (ENSCARG00000048465)	ENSCARG00000048478 #13	josd2 (ENSCARG00000048494) #14	ube2s (ENSCARG00000048513) #15	ENSCARG00000048541	ENSCARG00000048577 #16	dbpb (ENSCARG00000048585)	ntd5 (ENSCARG00000028360) #17	ENSCARG00000028365 #18	ENSCARG00000028367 #19	pitpnc1b (ENSCARG00000028375) #20	ENSCARG00000028399 #22	ENSCARG00000028410 #23	CACNG7 (ENSCARG00000028424) ##24	CACNG8 (ENSCARG00000028447) #25	CACNG6 (ENSCARG00000028452)	u2af2a (ENSCARG00000028460) #26	isoc2 (ENSCARG00000028493)	ENSCARG00000028506 #27	epn1a (ENSCARG00000028513) #28	sbk3 (ENSCARG00000028538) #29	mfap5 (ENSCARG00000028546) #30	aicda (ENSCARG00000028552) #31	nat14 (ENSCARG00000028564) #32	ENSCARG00000028575 #33	ENSCARG00000028580 #34	rasip1 (ENSCARG00000028596) #35
Cyprininae	ANCESTRAL SPECIES	7	ENSGT00940000162969.i ##10	ENSGT00550000075124.g ##11	ENSGT01030000235056.a.b	ENSGT00390000009864.b ##12	ENSGT00390000010577.b	ENSGT00950000183060.a.b.b.f ##13	ENSGT00390000009228.a.a ##14	ENSGT00940000157149.ib ##15	ENSGT00940000162254.b.c	ENSGT00530000064557.a.h.a ##16	ENSGT00940000165399.a.a.g.a	ENSGT00940000154967.a.b.a.a.e.b ##17	ENSGT00940000163608.d ##18	ENSGT00950000182979.a.b.b.b.a.d.a ##19	ENSGT00940000163128.b.b ##20	ENSGT00940000159109.a.b ##22	ENSGT00940000167373.a ##23	ENSGT01050000244961.b.g.a.b ##24	ENSGT01050000244893.c.b.a.g.a.a ##25	ENSGT00390000007786.b.g.b	ENSGT00940000155556.d.sb.a ##26	ENSGT00390000006753.A.b	ENSGT00940000166343.h ##27	ENSGT00940000160411.i.a ##28	ENSGT00940000167905.c ##29	ENSGT00390000017736.a.i ##30	ENSGT00940000158731.n ##31	ENSGT01000000216377	ENSGT00910000144307	ENSGT00390000007165.a.b ##34	ENSGT00940000160072.f ##35
Goldfish	MODERN SPECIES	35	atg12 (ENSCARG00000044611) ##9	cdc42ep5 (ENSCARG00000044634) ##10	grwd1 (ENSCARG00000044638) ##11	zgc:174888 (ENSCARG00000044693)	flcn (ENSCARG00000044733) ##12	ENSCARG00000045536	ENSCARG00000045573 ##13	josd2 (ENSCARG00000045631) ##14	ube2s (ENSCARG00000045653) ##15	ENSCARG00000045705	ENSCARG00000045712 ##16	dbpb (ENSCARG00000045716)	ENSCARG00000045732	ENSCARG00000045748 ##18	pitpnc1b (ENSCARG00000045753) ##20	ENSCARG00000045778 ##22	ENSCARG00000045880 ##23	CACNG7 (ENSCARG00000046059) ##24	CACNG8 (ENSCARG00000046074) ##25	CACNG6 (ENSCARG00000046093)	u2af2a (ENSCARG00000046169) ##26	isoc2 (ENSCARG00000006075)	ENSCARG00000006113 ##27	epn1a (ENSCARG00000006151) ##28	sbk3 (ENSCARG00000006237) ##29	aicda (ENSCARG00000006273) ##31	ENSCARG00000006307	ENSCARG00000006340	ENSCARG00000006363 ##34	rasip1 (ENSCARG00000006390) ##35	cox6b2 (ENSCARG00000006499)
Cyprininae_a	ANCESTRAL SPECIES	36	ENSGT00390000016654.u ##9	ENSGT00940000162969.i ##10	ENSGT00550000075124.g ##11	ENSGT00390000009864.b ##12	ENSGT00390000010577.b	ENSGT00950000183060.a.b.b.f ##13	ENSGT00390000009228.a.a ##14	ENSGT00940000157149.ib ##15	ENSGT00940000162254.b.c	ENSGT00530000064557.a.h.a ##16	ENSGT00940000165399.a.a.g.a	ENSGT00940000154967.a.b.a.a.e.b ##17	ENSGT00940000163608.d ##18	ENSGT00950000182979.a.b.b.b.a.d.a ##19	ENSGT00940000163128.b.b ##20	ENSGT00940000159109.a.b ##22	ENSGT00940000167373.a ##23	ENSGT01050000244961.b.g.a.b ##24	ENSGT01050000244893.c.b.a.g.a.a ##25	ENSGT00390000007786.b.g.b	ENSGT00940000155556.d.sb.a ##26	ENSGT00390000006753.A.b	ENSGT00940000166343.h ##27	ENSGT00940000160411.i.a ##28	ENSGT00940000167905.c ##29	ENSGT00390000017736.a.i ##30	ENSGT00940000158731.n ##31	ENSGT00940000155965.b.i.b ##33	ENSGT00390000007165.a.b ##34	ENSGT00940000160072.f ##35	ENSGT00940000164148.a.a.a
Common carp reference	MODERN SPECIES	2	ENSCCRG00000066163 ##8	ENSCCRG00000072184	cdc42ep5 (ENSCCRG00000022129) ##10	grwd1 (ENSCCRG00000022133) ##11	zgc:174888 (ENSCCRG00000078473)	ENSCCRG00000022139	ENSCCRG00000029521 ##13	josd2 (ENSCCRG00000053608) ##14	ube2s (ENSCCRG00000056122) ##15	ENSCCRG00000062105 ##16	dbpb (ENSCCRG00000046380)	ntd5 (ENSCCRG00000003759) ##17	ENSCCRG00000003776 ##18	ENSCCRG00000003782 ##19	pitpnc1b (ENSCCRG00000003795) ##20	ENSCCRG00000002657 ##22	ENSCCRG00000081816 ##23	ENSCCRG00000007393 ##25	ENSCCRG00000007397	u2af2a (ENSCCRG00000055842) ##26	ENSCCRG00000007466 ##27	epn1a (ENSCCRG00000007478) ##28	ENSCCRG00000062133	sbk3 (ENSCCRG00000068055) ##29	mfap5 (ENSCCRG00000071772) ##30	aicda (ENSCCRG00000012085) ##31	ENSCCRG00000058153 ##33	ENSCCRG00000010414 ##34	rasip1 (ENSCCRG00000022173) ##35	cox6b2 (ENSCCRG00000022164)	ENSCCRG00000062816 ##37
Golden-line barbel	MODERN SPECIES	250	atg12 (ENSSGRG00000024950) ##9	cdc42ep5 (ENSSGRG00000024949) ##10	grwd1 (ENSSGRG00000024930) ##11	flcn (ENSSGRG00000024779) ##12	leng9 (ENSSGRG00000024777)	ENSSGRG00000024776 ##13	josd2 (ENSSGRG00000024770) ##14	ube2s (ENSSGRG00000024769) ##15	ENSSGRG00000024768	ENSSGRG00000024767 ##16	dbpb (ENSSGRG00000024766)	ENSSGRG00000024764	ENSSGRG00000024763 ##18	ENSSGRG00000024762 ##19	pitpnc1b (ENSSGRG00000024761) ##20	ENSSGRG00000024760 ##22	ENSSGRG00000024702 ##23	ENSSGRG00000024701	CACNG7 (ENSSGRG00000024700) ##24	CACNG8 (ENSSGRG00000024697) ##25	CACNG6 (ENSSGRG00000024696)	u2af2a (ENSSGRG00000024537) ##26	isoc2 (ENSSGRG00000024525)	epn1a (ENSSGRG00000024494) ##28	sbk3 (ENSSGRG00000024492) ##29	mfap5 (ENSSGRG00000024491) ##30	aicda (ENSSGRG00000024484) ##31	nat14 (ENSSGRG00000024481) #32	ENSSGRG00000024479	ENSSGRG00000024477 ##34	rasip1 (ENSSGRG00000024463) ##35