Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00940000160190 #8	ENSGT00940000154628.B #9	ENSGT00940000162682.A.a.b	ENSGT00940000155540.b.b #10	ENSGT00950000182869.e.a.a.f.b #11	ENSGT00390000004409 #12	ENSGT00390000014618.a #13	ENSGT00940000153289.a.a.a #14	ENSGT00940000154935 #15	ENSGT00940000155303 #16	ENSGT00930000151028 #17	ENSGT00390000000153.l.b.c.a #18	ENSGT01030000234539.b.b.b #19	ENSGT00940000156008 #20	ENSGT00390000008264 #21	ENSGT00940000156914 #22	ENSGT00390000017848 #24	ENSGT00390000016042 #25	ENSGT00520000058758	ENSGT00940000156827 #26	ENSGT01100000263524.B.a #27	ENSGT00940000161797 #28	ENSGT00940000162401 #29	ENSGT00940000157566 #30	ENSGT00940000156212 #31	ENSGT00940000161228 #32	ENSGT00940000154603.B #33	ENSGT00950000183111.a.a #34	ENSGT00610000086772 #35	ENSGT00390000005233.b #36	ENSGT00940000159049 #37
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT00940000160190 #8	ENSGT00940000154628.B #9	ENSGT00940000162682.A.a.b	ENSGT00940000155540.b.b #10	ENSGT00950000182869.e.a.a.f.b #11	ENSGT00390000004409 #12	ENSGT00390000014618.a #13	ENSGT00940000153289.a.a.a #14	ENSGT00940000154935 #15	ENSGT00940000155303 #16	ENSGT00930000151028 #17	ENSGT00390000000153.l.b.c.a #18	ENSGT01030000234539.b.b.b #19	ENSGT00940000156008 #20	ENSGT00390000008264 #21	ENSGT00940000156914 #22	ENSGT00390000017848 #24	ENSGT00390000016042 #25	ENSGT00940000156827 #26	ENSGT01100000263524.B.a #27	ENSGT00940000161797 #28	ENSGT00940000162401 #29	ENSGT00940000157566 #30	ENSGT00940000156212 #31	ENSGT00940000161228 #32	ENSGT00940000154603.B #33	ENSGT00950000183111.a.a #34	ENSGT00610000086772 #35	ENSGT00390000005233.b #36	ENSGT00940000159049 #37	ENSGT00940000160098
Guinea pig	MODERN SPECIES	15	KAT6B (ENSCPOG00000006544) #7	DUSP29 (ENSCPOG00000022980) #8	DUSP13 (ENSCPOG00000006560) #9	SAMD8 (ENSCPOG00000031357) #10	VDAC2 (ENSCPOG00000002752) #11	COMTD1 (ENSCPOG00000002758) #12	ZNF503 (ENSCPOG00000010319) #13	LRMDA (ENSCPOG00000008454) #14	KCNMA1 (ENSCPOG00000011100) #15	DLG5 (ENSCPOG00000005329) #16	POLR3A (ENSCPOG00000022387) #17	RPS24 (ENSCPOG00000020096) #18	ZMIZ1 (ENSCPOG00000002268) #19	PPIF (ENSCPOG00000013666) #20	ZCCHC24 (ENSCPOG00000026826) #21	ANXA11 (ENSCPOG00000023458) #22	ENSCPOG00000034945 #23	ENSCPOG00000037289 #24	TMEM254 (ENSCPOG00000030137) #25	PTCHD4 (ENSCPOG00000005747) #26	OPN5 (ENSCPOG00000005742) #27	ADGRF4 (ENSCPOG00000010768) #28	ENSCPOG00000010766 #29	CD2AP (ENSCPOG00000010757) #30	TNFRSF21 (ENSCPOG00000010287) #31	ADGRF1 (ENSCPOG00000007461) #32	ENSCPOG00000020034 #33	ENSCPOG00000011402 #34	ANKRD66 (ENSCPOG00000037432) #35	PLA2G7 (ENSCPOG00000012786) #36	TDRD6 (ENSCPOG00000015698) #37
Hystricomorpha_b	ANCESTRAL SPECIES	3	ENSGT00940000160190 #8	ENSGT00940000154628.B #9	ENSGT00940000162682.A.a.b	ENSGT00940000155540.b.b #10	ENSGT00950000182869.e.a.a.f.b #11	ENSGT00390000004409 #12	ENSGT00390000014618.a #13	ENSGT00940000153289.a.a.a #14	ENSGT00940000154935 #15	ENSGT00940000155303 #16	ENSGT00930000151028 #17	ENSGT00390000000153.l.b.c.a #18	ENSGT01030000234539.b.b.b #19	ENSGT00940000156008 #20	ENSGT00390000008264 #21	ENSGT00940000156914 #22	ENSGT00390000017848 #24	ENSGT00390000016042 #25	ENSGT00940000156827 #26	ENSGT01100000263524.B.a #27	ENSGT00940000157566 #30	ENSGT00940000156212 #31	ENSGT00940000161228 #32	ENSGT00940000154603.B #33	ENSGT00950000183111.a.a #34	ENSGT00610000086772 #35	ENSGT00390000005233.b #36	ENSGT00940000159049 #37	ENSGT00940000160098	ENSGT00940000153141.A	ENSGT00940000159767
Long-tailed chinchilla	MODERN SPECIES	144	DUSP13 (ENSCLAG00000009900) #9	ENSCLAG00000009800	SAMD8 (ENSCLAG00000009370) #10	ENSCLAG00000012366	COMTD1 (ENSCLAG00000010142) #12	VDAC2 (ENSCLAG00000009384) #11	ZNF503 (ENSCLAG00000013608) #13	LRMDA (ENSCLAG00000010070) #14	KCNMA1 (ENSCLAG00000014554) #15	DLG5 (ENSCLAG00000014620) #16	POLR3A (ENSCLAG00000009629) #17	ENSCLAG00000013936 ##18	ZMIZ1 (ENSCLAG00000016557) #19	PPIF (ENSCLAG00000014222) #20	ZCCHC24 (ENSCLAG00000011227) #21	ANXA11 (ENSCLAG00000009076) #22	PLAC9 (ENSCLAG00000012966) #24	TMEM254 (ENSCLAG00000012491) #25	PTCHD4 (ENSCLAG00000011234) #26	OPN5 (ENSCLAG00000009879) #27	ADGRF4 (ENSCLAG00000009923) #28	ENSCLAG00000010147 #29	ENSCLAG00000009308	CD2AP (ENSCLAG00000009331) #30	TNFRSF21 (ENSCLAG00000015128) #31	ADGRF1 (ENSCLAG00000016116) #32	ADGRF5 (ENSCLAG00000010731) #33	ENSCLAG00000013170 #34	ANKRD66 (ENSCLAG00000013892) #35	PLA2G7 (ENSCLAG00000010984) #36	TDRD6 (ENSCLAG00000009187) #37
Degu	MODERN SPECIES	46	DUSP29 (ENSODEG00000014367) #8	DUSP13 (ENSODEG00000014816) #9	SAMD8 (ENSODEG00000015010) #10	VDAC2 (ENSODEG00000014433) #11	COMTD1 (ENSODEG00000015636) #12	ENSODEG00000014826	ZNF503 (ENSODEG00000015000) #13	LRMDA (ENSODEG00000015494) #14	KCNMA1 (ENSODEG00000016449) #15	DLG5 (ENSODEG00000015060) #16	POLR3A (ENSODEG00000015146) #17	RPS24 (ENSODEG00000015382) #18	ZMIZ1 (ENSODEG00000015504) #19	PPIF (ENSODEG00000015244) #20	ZCCHC24 (ENSODEG00000015281) #21	ANXA11 (ENSODEG00000014938) #22	ENSODEG00000014928	ENSODEG00000015033 #26	OPN5 (ENSODEG00000015357) #27	CD2AP (ENSODEG00000015575) #30	ENSODEG00000020279	TNFRSF21 (ENSODEG00000014919) #31	ENSODEG00000020221	ADGRF1 (ENSODEG00000016021) #32	ADGRF5 (ENSODEG00000016148) #33	ENSODEG00000015890 #34	ANKRD66 (ENSODEG00000015928) #35	PLA2G7 (ENSODEG00000015738) #36	TDRD6 (ENSODEG00000015639) #37	SLC25A27 (ENSODEG00000015240)	CYP39A1 (ENSODEG00000015974)
Naked mole-rat female	MODERN SPECIES	4	ENSHGLG00000038436	ENSHGLG00000017721	ENSHGLG00000012957 #13	ENSHGLG00000043730	LRMDA (ENSHGLG00000037301) #14	ENSHGLG00000047836	ENSHGLG00000037377	KCNMA1 (ENSHGLG00000014096) #15	ENSHGLG00000044375	ENSHGLG00000017828 #16	POLR3A (ENSHGLG00000017899) #17	RPS24 (ENSHGLG00000019372) ##18	ZMIZ1 (ENSHGLG00000019319) #19	PPIF (ENSHGLG00000019197) #20	ENSHGLG00000042244 #21	ENSHGLG00000017009 #22	ENSHGLG00000017020 #24	ENSHGLG00000017035 #25	ENSHGLG00000047182	ENSHGLG00000017041	ENSHGLG00000032722	ENSHGLG00000017403	ENSHGLG00000021041	ENSHGLG00000040541 #26	ENSHGLG00000049756	ENSHGLG00000016523 #26	ENSHGLG00000038333 #26	OPN5 (ENSHGLG00000016532) #27	ADGRF4 (ENSHGLG00000016547) #28	ENSHGLG00000016560 #29	ENSHGLG00000021025