Muroidea_A	ANCESTRAL SPECIES	10	ENSGT00940000154628.B #9	ENSGT00940000162682.A.a.b	ENSGT00940000155540.b.b #10	ENSGT00950000182869.e.a.a.f.b #11	ENSGT00390000004409 #12	ENSGT00390000014618.a #13	ENSGT00940000153289.a.a.a #14	ENSGT00900000143356	ENSGT00940000154935 #15	ENSGT00940000155303 #16	ENSGT00930000151028 #17	ENSGT00390000000153.l.a #18	ENSGT01030000234539.b.b.b #19	ENSGT00940000156008 #20	ENSGT00390000008264 #21	ENSGT00940000156914 #22	ENSGT00390000017848 #25	ENSGT00390000016042 #27	ENSGT00520000058758 #30	ENSGT00940000154537 #33	ENSGT00940000157660 #34	ENSGT00390000005529.a #35	ENSGT00940000156297 #36	ENSGT00940000157205 #37	ENSGT00940000154280	ENSGT00940000156550	ENSGT00940000156624	ENSGT00940000156780	ENSGT00940000156669.b	ENSGT00940000158385	ENSGT00530000063735.a
Murinae	ANCESTRAL SPECIES	26	ENSGT00940000160190 #8	ENSGT00940000154628.B #9	ENSGT00940000155540.b.b #10	ENSGT00950000182869.e.a.a.f.b #11	ENSGT00390000004409 #12	ENSGT00390000014618.a #13	ENSGT00940000153289.a.a.a #14	ENSGT00900000143356	ENSGT00940000154935 #15	ENSGT00940000155303 #16	ENSGT00930000151028 #17	ENSGT00390000000153.l.a #18	ENSGT01030000234539.b.b.b #19	ENSGT00940000156008 #20	ENSGT00390000008264 #21	ENSGT00940000156914 #22	ENSGT00390000017848 #25	ENSGT00390000016042 #27	ENSGT00520000058758 #30	ENSGT00940000154537 #33	ENSGT00940000157660 #34	ENSGT00390000005529.a #35	ENSGT00940000156297 #36	ENSGT00940000157205 #37	ENSGT00940000154280	ENSGT00940000156550	ENSGT00940000156624	ENSGT00940000156780	ENSGT00940000156669.b	ENSGT00940000158385	ENSGT00530000063735.a
Mus	ANCESTRAL SPECIES	8	ENSGT00940000157372 #7	ENSGT00940000160190 #8	ENSGT00940000154628.B #9	ENSGT00940000155540.b.b #10	ENSGT00950000182869.e.a.a.f.b #11	ENSGT00390000004409 #12	ENSGT00390000014618.a #13	ENSGT00940000153289.a.a.a #14	ENSGT00940000154935 #15	ENSGT00940000155303 #16	ENSGT00930000151028 #17	ENSGT00390000000153.l.a #18	ENSGT01030000234539.b.b.b #19	ENSGT00940000156008 #20	ENSGT00390000008264 #21	ENSGT00940000156914 #22	ENSGT00390000017848 #25	ENSGT00390000016042 #27	ENSGT00520000058758 #30	ENSGT00940000154537 #33	ENSGT00940000157660 #34	ENSGT00390000005529.a #35	ENSGT00940000156297 #36	ENSGT00940000157205 #37	ENSGT00940000154280	ENSGT00940000156550	ENSGT00940000156624	ENSGT00940000156780	ENSGT00940000156669.b	ENSGT00940000158385	ENSGT00530000063735.a
Shrew mouse	MODERN SPECIES	21	MGP_PahariEiJ_G0030019 #7	Dusp29 (MGP_PahariEiJ_G0030020) #8	Dusp13 (MGP_PahariEiJ_G0030021) #9	Samd8 (MGP_PahariEiJ_G0030022) #10	Vdac2 (MGP_PahariEiJ_G0030023) #11	Comtd1 (MGP_PahariEiJ_G0030024) #12	Zfp503 (MGP_PahariEiJ_G0030025) #13	Lrmda (MGP_PahariEiJ_G0030026) #14	Kcnma1 (MGP_PahariEiJ_G0030027) #15	Dlg5 (MGP_PahariEiJ_G0030028) #16	Polr3a (MGP_PahariEiJ_G0030029) #17	Rps24 (MGP_PahariEiJ_G0030030) #18	Zmiz1 (MGP_PahariEiJ_G0030031) #19	Ppif (MGP_PahariEiJ_G0030032) #20	Zcchc24 (MGP_PahariEiJ_G0030033) #21	Anxa11 (MGP_PahariEiJ_G0030034) #22	MGP_PahariEiJ_G0030035 #23	MGP_PahariEiJ_G0030036 #24	MGP_PahariEiJ_G0030037 #25	MGP_PahariEiJ_G0030038 #26	MGP_PahariEiJ_G0030039 #27	MGP_PahariEiJ_G0030040 #28	MGP_PahariEiJ_G0030041 #29	MGP_PahariEiJ_G0030042 #30	MGP_PahariEiJ_G0030043 #31	MGP_PahariEiJ_G0030044 #32	MGP_PahariEiJ_G0030045 #33	Slmap (MGP_PahariEiJ_G0030046) #34	Dennd6a (MGP_PahariEiJ_G0030047) #35	Arf4 (MGP_PahariEiJ_G0030048) #36	Pde12 (MGP_PahariEiJ_G0030049) #37
Mus_A	ANCESTRAL SPECIES	12	ENSGT00940000160190 #8	ENSGT00940000154628.B #9	ENSGT00940000155540.b.b #10	ENSGT00950000182869.e.a.a.f.b.j #11	ENSGT00390000004409 #12	ENSGT00390000014618.a #13	ENSGT00940000153289.a.a.a #14	ENSGT00940000154935 #15	ENSGT00940000155303 #16	ENSGT00860000136364	ENSGT00930000151028 #17	ENSGT00390000000153.l.a #18	ENSGT01030000234539.b.b.b #19	ENSGT00940000156008 #20	ENSGT00390000008264 #21	ENSGT00940000156914 #22	ENSGT00390000017848 #25	ENSGT00390000016042 #27	ENSGT00520000058758 #30	ENSGT00940000154537 #33	ENSGT00940000157660 #34	ENSGT00390000008294.e.a.w.b	ENSGT00390000005529.a #35	ENSGT00940000156297 #36	ENSGT00940000157205 #37	ENSGT00940000154280	ENSGT00940000156550	ENSGT00940000156624	ENSGT00940000156780	ENSGT00940000156669.b	ENSGT00940000158385
Ryukyu mouse	MODERN SPECIES	5	Dusp13 (MGP_CAROLIEiJ_G0019007) #9	Samd8 (MGP_CAROLIEiJ_G0019008) #10	Vdac2 (MGP_CAROLIEiJ_G0019009) #11	Comtd1 (MGP_CAROLIEiJ_G0019010) #12	Zfp503 (MGP_CAROLIEiJ_G0019011) #13	Lrmda (MGP_CAROLIEiJ_G0019012) #14	Kcnma1 (MGP_CAROLIEiJ_G0019013) #15	Dlg5 (MGP_CAROLIEiJ_G0019014) #16	MGP_CAROLIEiJ_G0019015	Polr3a (MGP_CAROLIEiJ_G0019016) #17	Rps24 (MGP_CAROLIEiJ_G0019017) #18	Zmiz1 (MGP_CAROLIEiJ_G0019018) #19	Ppif (MGP_CAROLIEiJ_G0019019) #20	Zcchc24 (MGP_CAROLIEiJ_G0019020) #21	MGP_CAROLIEiJ_G0019021	Anxa11 (MGP_CAROLIEiJ_G0019022) #22	MGP_CAROLIEiJ_G0019023 #25	MGP_CAROLIEiJ_G0019024 #25	MGP_CAROLIEiJ_G0019025 #25	MGP_CAROLIEiJ_G0019026 #27	MGP_CAROLIEiJ_G0019027 #27	Slmap (MGP_CAROLIEiJ_G0019028) #34	MGP_CAROLIEiJ_G0019029	Dennd6a (MGP_CAROLIEiJ_G0019030) #35	Arf4 (MGP_CAROLIEiJ_G0019031) #36	Pde12 (MGP_CAROLIEiJ_G0019032) #37	MGP_CAROLIEiJ_G0019033	Asb14 (MGP_CAROLIEiJ_G0019034)	Appl1 (MGP_CAROLIEiJ_G0019035)	Hesx1 (MGP_CAROLIEiJ_G0019036)	Il17rd (MGP_CAROLIEiJ_G0019037)
Mus_B	ANCESTRAL SPECIES	11	ENSGT00940000160190 #8	ENSGT00940000154628.B #9	ENSGT00940000155540.b.b #10	ENSGT00950000182869.e.a.a.f.b.j #11	ENSGT00390000004409 #12	ENSGT00390000014618.a #13	ENSGT00940000153289.a.a.a #14	ENSGT00940000154935 #15	ENSGT00940000155303 #16	ENSGT00860000136364	ENSGT00930000151028 #17	ENSGT00390000000153.l.a #18	ENSGT01030000234539.b.b.b #19	ENSGT00940000156008 #20	ENSGT00390000008264 #21	ENSGT00940000156914 #22	ENSGT00390000017848 #25	ENSGT00390000016042 #27	ENSGT00520000058758 #30	ENSGT00940000154537 #33	ENSGT00940000157660 #34	ENSGT00390000008294.e.a.w.b	ENSGT00390000005529.a #35	ENSGT00940000156297 #36	ENSGT00940000157205 #37	ENSGT00940000154280	ENSGT00940000156550	ENSGT00940000156624	ENSGT00940000156780	ENSGT00940000156669.b	ENSGT00940000158385
Mouse	MODERN SPECIES	5	Kat6b (ENSMUSG00000021767) #7	Dusp29 (ENSMUSG00000063821) #8	Dusp13 (ENSMUSG00000021768) #9	Samd8 (ENSMUSG00000021770) #10	Vdac2 (ENSMUSG00000021771) #11	Comtd1 (ENSMUSG00000021773) #12	Zfp503 (ENSMUSG00000039081) #13	Lrmda (ENSMUSG00000063458) #14	Kcnma1 (ENSMUSG00000063142) #15	Dlg5 (ENSMUSG00000021782) #16	Polr3a (ENSMUSG00000025280) #17	Rps24 (ENSMUSG00000025290) #18	Zmiz1 (ENSMUSG00000007817) #19	Ppif (ENSMUSG00000021868) #20	Zcchc24 (ENSMUSG00000055538) #21	Anxa11 (ENSMUSG00000021866) #22	Plac9 (ENSMUSG00000095304) #25	Tmem254 (ENSMUSG00000072676) #27	Cphx1 (ENSMUSG00000095975) #30	Duxbl1 (ENSMUSG00000048502) #33	Slmap (ENSMUSG00000021870) #34	Dennd6a (ENSMUSG00000040818) #35	Arf4 (ENSMUSG00000021877) #36	Pde12 (ENSMUSG00000043702) #37	Dnah12 (ENSMUSG00000021879)	Asb14 (ENSMUSG00000021898)	Appl1 (ENSMUSG00000040760)	Hesx1 (ENSMUSG00000040726)	Il17rd (ENSMUSG00000040717)	Arhgef3 (ENSMUSG00000021895)	Tasor (ENSMUSG00000040651)
Mus_C	ANCESTRAL SPECIES	26	ENSGT00940000160190 #8	ENSGT00940000154628.B #9	ENSGT00940000155540.b.b #10	ENSGT00950000182869.e.a.a.f.b.j #11	ENSGT00390000004409 #12	ENSGT00390000014618.a #13	ENSGT00940000153289.a.a.a #14	ENSGT00940000154935 #15	ENSGT00940000155303 #16	ENSGT00860000136364	ENSGT00930000151028 #17	ENSGT00390000000153.l.b.c.a ##18	ENSGT01030000234539.b.b.b #19	ENSGT00940000156008 #20	ENSGT00390000008264 #21	ENSGT00940000156914 #22	ENSGT00390000017848 #25	ENSGT00390000016042 #27	ENSGT00520000058758 #30	ENSGT00940000154537 #33	ENSGT00940000157660 #34	ENSGT00390000008294.e.a.w.b	ENSGT00390000005529.a #35	ENSGT00940000156297 #36	ENSGT00940000157205 #37	ENSGT00940000154280	ENSGT00940000156550	ENSGT00940000156624	ENSGT00940000156780	ENSGT00940000156669.b	ENSGT00950000182869.e.b.b ##11
Steppe mouse	MODERN SPECIES	275																Anxa11 (ENSMSIG00000026525) #22	Plac9 (ENSMSIG00000026558) #25	Tmem254 (ENSMSIG00000026609) #27	Cphx1 (ENSMSIG00000026692) #30	Duxbl1 (ENSMSIG00000026714) #33	ENSMSIG00000026746	Slmap (ENSMSIG00000026772) #34	ENSMSIG00000027380	Dennd6a (ENSMSIG00000027390) #35	Arf4 (ENSMSIG00000027424) #36	Pde12 (ENSMSIG00000027439) #37	Dnah12 (ENSMSIG00000027454)	Asb14 (ENSMSIG00000027841)	Appl1 (ENSMSIG00000027855)	Hesx1 (ENSMSIG00000027875)	Il17rd (ENSMSIG00000027878)
spretus	MODERN SPECIES	5	Dusp29 (MGP_SPRETEiJ_G0019884) #8	Dusp13 (MGP_SPRETEiJ_G0019885) #9	Samd8 (MGP_SPRETEiJ_G0019886) #10	Vdac2 (MGP_SPRETEiJ_G0019887) #11	Comtd1 (MGP_SPRETEiJ_G0019888) #12	Zfp503 (MGP_SPRETEiJ_G0019889) #13	Lrmda (MGP_SPRETEiJ_G0019890) #14	Kcnma1 (MGP_SPRETEiJ_G0019891) #15	Dlg5 (MGP_SPRETEiJ_G0019892) #16	MGP_SPRETEiJ_G0019893	Polr3a (MGP_SPRETEiJ_G0019894) #17	MGP_SPRETEiJ_G0019895 #18	Zmiz1 (MGP_SPRETEiJ_G0019896) #19	Ppif (MGP_SPRETEiJ_G0019897) #20	Zcchc24 (MGP_SPRETEiJ_G0019898) #21	Anxa11 (MGP_SPRETEiJ_G0019899) #22	MGP_SPRETEiJ_G0019900 #25	MGP_SPRETEiJ_G0019901 #25	MGP_SPRETEiJ_G0019902 #25	MGP_SPRETEiJ_G0019903 #27	MGP_SPRETEiJ_G0019904 #27	MGP_SPRETEiJ_G0019905 #27	MGP_SPRETEiJ_G0019906 #30	MGP_SPRETEiJ_G0019907 #30	MGP_SPRETEiJ_G0019908 #30	MGP_SPRETEiJ_G0019910 #33	MGP_SPRETEiJ_G0019909 #33	Slmap (MGP_SPRETEiJ_G0019912) #34	MGP_SPRETEiJ_G0019913	Dennd6a (MGP_SPRETEiJ_G0019914) #35	Arf4 (MGP_SPRETEiJ_G0019915) #36
Rat	MODERN SPECIES	7								Polr3a (ENSRNOG00000010008) #17	Rps24 (ENSRNOG00000010189) ##18	ENSRNOG00000070644	Zmiz1 (ENSRNOG00000010488) #19	Ppif (ENSRNOG00000010558) #20	Zcchc24 (ENSRNOG00000040205) #21	LOC103693862 (ENSRNOG00000056629)	ENSRNOG00000064603	Anxa11 (ENSRNOG00000010984) #22	Plac9 (ENSRNOG00000011263) #25	Tmem254 (ENSRNOG00000011276) #27	Cphx1 (ENSRNOG00000025433) #30	Dux4 (ENSRNOG00000025408) #33	LOC100911661 (ENSRNOG00000067370)	Slmap (ENSRNOG00000011307) #34	Dennd6a (ENSRNOG00000011636) #35	Arf4 (ENSRNOG00000012623) #36	Pde12 (ENSRNOG00000059442) #37	Dnah12 (ENSRNOG00000059865)	Asb14 (ENSRNOG00000013346)	Appl1 (ENSRNOG00000013574)	Hesx1 (ENSRNOG00000014133)	Il17rd (ENSRNOG00000021966)	Arhgef3 (ENSRNOG00000014363)
Cricetidae	ANCESTRAL SPECIES	15	ENSGT00940000154628.B #9	ENSGT00940000162682.A.a.b	ENSGT00940000155540.b.b #10	ENSGT00950000182869.e.a.a.f.b #11	ENSGT00390000004409 #12	ENSGT00390000014618.a #13	ENSGT00940000153289.a.a.a #14	ENSGT00900000143356	ENSGT00940000154935 #15	ENSGT00940000155303 #16	ENSGT00930000151028.bb.b #17	ENSGT00390000000153.l.a #18	ENSGT01030000234539.b.b.b #19	ENSGT00940000156008 #20	ENSGT00390000008264 #21	ENSGT00940000156914 #22	ENSGT00390000017848 #25	ENSGT00390000016042 #27	ENSGT00520000058758 #30	ENSGT00940000154537.z #33	ENSGT00940000157660 #34	ENSGT00390000005529.a #35	ENSGT00940000156297 #36	ENSGT00940000157205 #37	ENSGT00940000154280	ENSGT00940000156550	ENSGT00940000156624	ENSGT00940000156780	ENSGT00940000156669.b	ENSGT00940000158385	ENSGT00530000063735.a
Cricetidae_B	ANCESTRAL SPECIES	11	ENSGT00940000160190 #8	ENSGT00940000154628.B #9	ENSGT00940000155540.b.b #10	ENSGT00950000182869.e.a.a.f.b #11	ENSGT00390000004409 #12	ENSGT00390000014618.a #13	ENSGT00940000153289.a.a.a #14	ENSGT00900000143356	ENSGT00940000154935 #15	ENSGT00940000155303 #16	ENSGT00930000151028.bb.b #17	ENSGT00390000000153.l.a #18	ENSGT01030000234539.b.b.b #19	ENSGT00940000156008 #20	ENSGT00390000008264 #21	ENSGT00940000156914 #22	ENSGT00390000017848 #25	ENSGT00390000016042 #27	ENSGT00520000058758 #30	ENSGT00940000154537.z #33	ENSGT00390000017724.a.a	ENSGT00940000156679	ENSGT00390000018500.b	ENSGT00940000155892	ENSGT00940000154791	ENSGT00940000156388	ENSGT00950000182865.a	ENSGT00940000157677	ENSGT00940000153541.B	ENSGT00940000156494	ENSGT00940000157928
Northern American deer mouse	MODERN SPECIES	22	Dusp13 (ENSPEMG00000012475) #9	Samd8 (ENSPEMG00000020777) #10	Vdac2 (ENSPEMG00000020528) #11	Comtd1 (ENSPEMG00000015720) #12	Zfp503 (ENSPEMG00000011642) #13	Lrmda (ENSPEMG00000015468) #14	ENSPEMG00000027529	ENSPEMG00000030855	Kcnma1 (ENSPEMG00000021200) #15	Dlg5 (ENSPEMG00000000028) #16	ENSPEMG00000006768 #17	Rps24 (ENSPEMG00000014749) #18	Zmiz1 (ENSPEMG00000018413) #19	Ppif (ENSPEMG00000022747) #20	Zcchc24 (ENSPEMG00000026551) #21	Anxa11 (ENSPEMG00000005803) #22	Plac9 (ENSPEMG00000023790) #25	Tmem254 (ENSPEMG00000008045) #27	ENSPEMG00000016400 #30	Duxbl1 (ENSPEMG00000024340) #33	ENSPEMG00000030014	ENSPEMG00000025547 #17	Eaf1 (ENSPEMG00000015934)	Mettl6 (ENSPEMG00000006627)	Sh3bp5 (ENSPEMG00000010547)	Capn7 (ENSPEMG00000015264)	Dnah1 (ENSPEMG00000009939)	Bap1 (ENSPEMG00000004441)	Phf7 (ENSPEMG00000018721)	Sema3g (ENSPEMG00000013600)	Tnnc1 (ENSPEMG00000012039)
Prairie vole	MODERN SPECIES	14	Appl1 (ENSMOCG00000020080)	Asb14 (ENSMOCG00000005229)	ENSMOCG00000021714	ENSMOCG00000005104	ENSMOCG00000010627	ENSMOCG00000013173	Pde12 (ENSMOCG00000020734) #37	ENSMOCG00000001505 #36	Dennd6a (ENSMOCG00000007569) #35	Slmap (ENSMOCG00000022562) #34	Polr3a (ENSMOCG00000012185) #17	Rps24 (ENSMOCG00000018968) #18	Zmiz1 (ENSMOCG00000020382) #19	Ppif (ENSMOCG00000018006) #20	Zcchc24 (ENSMOCG00000022142) #21	Anxa11 (ENSMOCG00000022761) #22	Plac9 (ENSMOCG00000022874) #25	Tmem254 (ENSMOCG00000008162) #27	Duxbl1 (ENSMOCG00000009549) #33	Eaf1 (ENSMOCG00000016000)	Mettl6 (ENSMOCG00000017391)	Sh3bp5 (ENSMOCG00000019047)	Capn7 (ENSMOCG00000020566)	Dnah1 (ENSMOCG00000007684)	Bap1 (ENSMOCG00000013939)	Phf7 (ENSMOCG00000016623)	Sema3g (ENSMOCG00000005022)	Tnnc1 (ENSMOCG00000002938)	ENSMOCG00000017988	ENSMOCG00000012665	Stab1 (ENSMOCG00000019424)
Cricetinae	ANCESTRAL SPECIES	47										ENSGT00940000161714.b	ENSGT00930000151028.bb.a #17	ENSGT00390000000153.l.a #18	ENSGT01030000234539.b.b.b #19	ENSGT00940000156008 #20	ENSGT00390000008264 #21	ENSGT00940000156914 #22	ENSGT00390000017848 #25	ENSGT00390000016042 #27	ENSGT00940000154537.z #33	ENSGT00940000157660 #34	ENSGT00390000005529.a #35	ENSGT00940000156297 #36	ENSGT00940000157205 #37	ENSGT00940000154280	ENSGT00940000156550	ENSGT00940000156624	ENSGT00940000156780	ENSGT00940000156669.b	ENSGT00940000158385	ENSGT00530000063735.a	ENSGT00390000012411
Chinese hamster chok1gshd	MODERN SPECIES	76											ENSCGRG00001015599 #17	Rps24 (ENSCGRG00001012180) #18	Zmiz1 (ENSCGRG00001013752) #19	Ppif (ENSCGRG00001021457) #20	Zcchc24 (ENSCGRG00001021075) #21	Anxa11 (ENSCGRG00001008189) #22	Plac9 (ENSCGRG00001010798) #25	Tmem254 (ENSCGRG00001023811) #27	Duxbl1 (ENSCGRG00001017348) #33	Slmap (ENSCGRG00001024198) #34	Dennd6a (ENSCGRG00001021471) #35	Arf4 (ENSCGRG00001004744) #36	Pde12 (ENSCGRG00001021836) #37	ENSCGRG00001000070	ENSCGRG00001013441	Asb14 (ENSCGRG00001022870)	Appl1 (ENSCGRG00001015615)	Hesx1 (ENSCGRG00001024571)	Il17rd (ENSCGRG00001018167)	Arhgef3 (ENSCGRG00001006619)	Tasor (ENSCGRG00001023504)
Golden Hamster	MODERN SPECIES	803											Nlrp2 (ENSMAUG00000015789)	Polr3a (ENSMAUG00000016247) #17	ENSMAUG00000003646	Ppif (ENSMAUG00000019533) #20	Zcchc24 (ENSMAUG00000016450) #21	Anxa11 (ENSMAUG00000009705) #22	Plac9 (ENSMAUG00000001932) #25	Tmem254 (ENSMAUG00000010787) #27	ENSMAUG00000015071	ENSMAUG00000009139	ENSMAUG00000007867	Sh3bp5 (ENSMAUG00000010671)	Capn7 (ENSMAUG00000019335)	ENSMAUG00000013275	ENSMAUG00000016506	Bap1 (ENSMAUG00000013459)	Phf7 (ENSMAUG00000014188)	Sema3g (ENSMAUG00000000962)	Tnnc1 (ENSMAUG00000018023)	Nisch (ENSMAUG00000011330)	Stab1 (ENSMAUG00000001222)