Testudinoidea	ANCESTRAL SPECIES	9	ENSGT00510000047481 #8	ENSGT00390000003033 #9	ENSGT00940000162486	ENSGT00390000010672 #10	ENSGT00390000006618 #11	ENSGT00940000157516 #12	ENSGT00940000158216 #13	ENSGT00940000162528 #14	ENSGT00940000156285 #15	ENSGT00940000154951 #16	ENSGT00940000154913 #17	ENSGT00950000183009 #18	ENSGT00940000160680 #19	ENSGT00940000156768 #20	ENSGT00390000004977 #21	ENSGT00950000182895.a.b #22	ENSGT00940000158193 #23	ENSGT00510000047718 #24	ENSGT00940000154360.A.b #25	ENSGT00940000156404 #26	ENSGT00390000018807 #27	ENSGT00940000159292 #28	ENSGT00390000001159 #29	ENSGT00940000155792 #30	ENSGT00470000042284 #31	ENSGT00940000160342 #32	ENSGT00940000160749.b #33	ENSGT00940000158655 #34	ENSGT00940000160898 #35	ENSGT00510000047981.d.d #36	ENSGT00510000047981.d.c #37
Testudinidae	ANCESTRAL SPECIES	7	ENSGT00510000047481 #8	ENSGT00390000003033 #9	ENSGT00940000162486	ENSGT00390000010672 #10	ENSGT00390000006618 #11	ENSGT00940000157516 #12	ENSGT00940000158216 #13	ENSGT00940000162528 #14	ENSGT00940000156285 #15	ENSGT00940000154951 #16	ENSGT00940000154913 #17	ENSGT00950000183009 #18	ENSGT00940000160680 #19	ENSGT00940000156768 #20	ENSGT00390000004977 #21	ENSGT00950000182895.a.b #22	ENSGT00940000158193 #23	ENSGT00510000047718 #24	ENSGT00940000154360.A.b #25	ENSGT00940000156404 #26	ENSGT00390000018807 #27	ENSGT00940000159292 #28	ENSGT00390000001159 #29	ENSGT00940000155792 #30	ENSGT00470000042284 #31	ENSGT00940000160342 #32	ENSGT00940000160749.b #33	ENSGT00940000158655 #34	ENSGT00940000160898 #35	ENSGT00510000047981.d.d #36	ENSGT00510000047981.d.c #37
Goode s thornscrub tortoise	MODERN SPECIES	23	ENSGEVG00005017215 #7	DBR1 (ENSGEVG00005017237) #8	ARMC8 (ENSGEVG00005017273) #9	VPS8 (ENSGEVG00005017396) #10	C3orf70 (ENSGEVG00005017547) #11	EHHADH (ENSGEVG00005017560) #12	MAP3K13 (ENSGEVG00005017580) #13	TMEM41A (ENSGEVG00005017612) #14	LIPH (ENSGEVG00005017629) #15	SENP2 (ENSGEVG00005017716) #16	IGF2BP2 (ENSGEVG00005017746) #17	TRA2B (ENSGEVG00005017784) #18	ETV5 (ENSGEVG00005017806) #19	DGKG (ENSGEVG00005018029) #20	ENSGEVG00005019001 #21	SUMO3 (ENSGEVG00005019014) #22	UBE2G2 (ENSGEVG00005019022) #23	TSPEAR (ENSGEVG00005019038) #24	LRRC3 (ENSGEVG00005019061) #25	TRPM2 (ENSGEVG00005019195) #26	CFAP410 (ENSGEVG00005019553) #27	PFKL (ENSGEVG00005019748) #28	PROCR (ENSGEVG00005020012) #29	DNAJB11 (ENSGEVG00005020016) #30	TBCCD1 (ENSGEVG00005020024) #31	CRYGS (ENSGEVG00005020032) #32	SOX14 (ENSGEVG00005020036) #33	CLDN18 (ENSGEVG00005020040) #34	ENSGEVG00005020044 #35	ENSGEVG00005020053 #36	ENSGEVG00005020057 #37
Abingdon island giant tortoise	MODERN SPECIES	247												TRA2B (ENSCABG00000021776) #18	ETV5 (ENSCABG00000021753) #19	DGKG (ENSCABG00000021705) #20	ENSCABG00000021701 #21	SUMO3 (ENSCABG00000021700) #22	UBE2G2 (ENSCABG00000021699) #23	TSPEAR (ENSCABG00000021695) #24	LRRC3 (ENSCABG00000021692) #25	ENSCABG00000021687 #26	ENSCABG00000021624 #26	ENSCABG00000021610 #26	CFAP410 (ENSCABG00000021604) #27	PFKL (ENSCABG00000020197) #28	ENSCABG00000020025 #29	DNAJB11 (ENSCABG00000019987) #30	TBCCD1 (ENSCABG00000019974) #31	CRYGS (ENSCABG00000019935) #32	ENSCABG00000019930	SOX14 (ENSCABG00000019927) #33	CLDN18 (ENSCABG00000019924) #34
Emydidae	ANCESTRAL SPECIES	3	ENSGT00510000047481 #8	ENSGT00390000003033 #9	ENSGT00940000162486	ENSGT00390000010672 #10	ENSGT00390000006618 #11	ENSGT00940000157516 #12	ENSGT00940000158216 #13	ENSGT00940000162528 #14	ENSGT00940000156285 #15	ENSGT00940000154951 #16	ENSGT00940000154913 #17	ENSGT00950000183009 #18	ENSGT00940000160680 #19	ENSGT00940000156768 #20	ENSGT00390000004977 #21	ENSGT00950000182895.a.b #22	ENSGT00940000158193 #23	ENSGT00510000047718 #24	ENSGT00940000154360.A.b #25	ENSGT00940000156404 #26	ENSGT00390000018807 #27	ENSGT00940000159292 #28	ENSGT00390000001159 #29	ENSGT00940000155792 #30	ENSGT00470000042284 #31	ENSGT00940000160342 #32	ENSGT00940000160749.b #33	ENSGT00940000158655 #34	ENSGT00940000160898 #35	ENSGT00510000047981.d.c #37	ENSGT00940000155297.a
painted turtle	MODERN SPECIES	776																SUMO3 (ENSCPBG00000000990) #22	UBE2G2 (ENSCPBG00000000961) #23	TSPEAR (ENSCPBG00000000821) #24	LRRC3 (ENSCPBG00000000788) #25	TRPM2 (ENSCPBG00000000683) #26	CFAP410 (ENSCPBG00000000638) #27	PFKL (ENSCPBG00000000606) #28	ENSCPBG00000000582 #29	DNAJB11 (ENSCPBG00000000567) #30	TBCCD1 (ENSCPBG00000000555) #31	ENSCPBG00000000543 #32	CRYGS (ENSCPBG00000000526) #32	RNF7 (ENSCPBG00000000507)	SOX14 (ENSCPBG00000000488) #33	CLDN18 (ENSCPBG00000000452) #34	DZIP1L (ENSCPBG00000000430) #35
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	384												ENSTMTG00000004920 #18	ETV5 (ENSTMTG00000004932) #19	DGKG (ENSTMTG00000005057) #20	ENSTMTG00000005986 #21	ENSTMTG00000006007 #22	UBE2G2 (ENSTMTG00000006035) #23	TSPEAR (ENSTMTG00000006080) #24	LRRC3 (ENSTMTG00000006208) #25	TRPM2 (ENSTMTG00000006442) #26	CFAP410 (ENSTMTG00000009210) #27	PFKL (ENSTMTG00000009232) #28	PROCR (ENSTMTG00000009275) #29	DNAJB11 (ENSTMTG00000009281) #30	TBCCD1 (ENSTMTG00000009321) #31	CRYGS (ENSTMTG00000009357) #32	SOX14 (ENSTMTG00000009366) #33	CLDN18 (ENSTMTG00000009380) #34	ENSTMTG00000009397 #35	ENSTMTG00000009413 #37	ENSTMTG00000009424
Three-toed box turtle	MODERN SPECIES	90	SMIM5 (ENSTMTG00000015772)	RECQL5 (ENSTMTG00000015741)	ENSTMTG00000015710	ENSTMTG00000015653	LLGL2 (ENSTMTG00000015592)	TSEN54 (ENSTMTG00000015553)	ENSTMTG00000015541	ENSTMTG00000015533	TMEM94 (ENSTMTG00000015482)	GRB2 (ENSTMTG00000015461)	SLC25A19 (ENSTMTG00000015450)	MIF4GD (ENSTMTG00000015427)	MRPS7 (ENSTMTG00000015414)	GGA3 (ENSTMTG00000015393)	NUP85 (ENSTMTG00000015363)	ENSTMTG00000015348 #22	JPT1 (ENSTMTG00000015295)	NT5C (ENSTMTG00000015284)	ENSTMTG00000015278	SLC16A5 (ENSTMTG00000015267)	ENSTMTG00000015211	KCTD2 (ENSTMTG00000015200)	ATP5PD (ENSTMTG00000015190)	MRPL58 (ENSTMTG00000015181)	CDR2L (ENSTMTG00000015174)	HID1 (ENSTMTG00000015149)	OTOP3 (ENSTMTG00000015110)	OTOP2 (ENSTMTG00000015096)	USH1G (ENSTMTG00000015083)	FADS6 (ENSTMTG00000015037)	ENSTMTG00000015000