Cryptodira	ANCESTRAL SPECIES	37	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000162486	ENSGT00390000010672	ENSGT00390000006618	ENSGT00940000157516	ENSGT00940000158216	ENSGT00940000162528	ENSGT00940000156285	ENSGT00940000154951	ENSGT00940000154913	ENSGT00950000183009 #18	ENSGT00940000160680 #19	ENSGT00940000156768 #20	ENSGT00390000004977 #21	ENSGT00950000182895.a.b #22	ENSGT00940000158193 #23	ENSGT00510000047718 #24	ENSGT00940000154360.A.b #25	ENSGT00940000156404 #26	ENSGT00390000018807 #29	ENSGT00940000159292 #30	ENSGT00390000001159 #31	ENSGT00940000155792 #32	ENSGT00470000042284 #33	ENSGT00940000160342 #34	ENSGT00940000160749.b #36	ENSGT00940000158655 #37	ENSGT00940000160898	ENSGT00510000047981.d	ENSGT00940000155297
Testudinoidea	ANCESTRAL SPECIES	9	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000162486	ENSGT00390000010672	ENSGT00390000006618	ENSGT00940000157516	ENSGT00940000158216	ENSGT00940000162528	ENSGT00940000156285	ENSGT00940000154951	ENSGT00940000154913	ENSGT00950000183009 #18	ENSGT00940000160680 #19	ENSGT00940000156768 #20	ENSGT00390000004977 #21	ENSGT00950000182895.a.b #22	ENSGT00940000158193 #23	ENSGT00510000047718 #24	ENSGT00940000154360.A.b #25	ENSGT00940000156404 #26	ENSGT00390000018807 #29	ENSGT00940000159292 #30	ENSGT00390000001159 #31	ENSGT00940000155792 #32	ENSGT00470000042284 #33	ENSGT00940000160342 #34	ENSGT00940000160749.b #36	ENSGT00940000158655 #37	ENSGT00940000160898	ENSGT00510000047981.d.d	ENSGT00510000047981.d.c
Testudinidae	ANCESTRAL SPECIES	7	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000162486	ENSGT00390000010672	ENSGT00390000006618	ENSGT00940000157516	ENSGT00940000158216	ENSGT00940000162528	ENSGT00940000156285	ENSGT00940000154951	ENSGT00940000154913	ENSGT00950000183009 #18	ENSGT00940000160680 #19	ENSGT00940000156768 #20	ENSGT00390000004977 #21	ENSGT00950000182895.a.b #22	ENSGT00940000158193 #23	ENSGT00510000047718 #24	ENSGT00940000154360.A.b #25	ENSGT00940000156404 #26	ENSGT00390000018807 #29	ENSGT00940000159292 #30	ENSGT00390000001159 #31	ENSGT00940000155792 #32	ENSGT00470000042284 #33	ENSGT00940000160342 #34	ENSGT00940000160749.b #36	ENSGT00940000158655 #37	ENSGT00940000160898	ENSGT00510000047981.d.d	ENSGT00510000047981.d.c
Abingdon island giant tortoise	MODERN SPECIES	247												TRA2B (ENSCABG00000021776) #18	ETV5 (ENSCABG00000021753) #19	DGKG (ENSCABG00000021705) #20	ENSCABG00000021701 #21	SUMO3 (ENSCABG00000021700) #22	UBE2G2 (ENSCABG00000021699) #23	TSPEAR (ENSCABG00000021695) #24	LRRC3 (ENSCABG00000021692) #25	ENSCABG00000021687 #26	ENSCABG00000021624 #27	ENSCABG00000021610 #28	CFAP410 (ENSCABG00000021604) #29	PFKL (ENSCABG00000020197) #30	ENSCABG00000020025 #31	DNAJB11 (ENSCABG00000019987) #32	TBCCD1 (ENSCABG00000019974) #33	CRYGS (ENSCABG00000019935) #34	ENSCABG00000019930 #35	SOX14 (ENSCABG00000019927) #36	CLDN18 (ENSCABG00000019924) #37
Goode s thornscrub tortoise	MODERN SPECIES	23	ENSGEVG00005017215	DBR1 (ENSGEVG00005017237)	ARMC8 (ENSGEVG00005017273)	VPS8 (ENSGEVG00005017396)	C3orf70 (ENSGEVG00005017547)	EHHADH (ENSGEVG00005017560)	MAP3K13 (ENSGEVG00005017580)	TMEM41A (ENSGEVG00005017612)	LIPH (ENSGEVG00005017629)	SENP2 (ENSGEVG00005017716)	IGF2BP2 (ENSGEVG00005017746)	TRA2B (ENSGEVG00005017784) #18	ETV5 (ENSGEVG00005017806) #19	DGKG (ENSGEVG00005018029) #20	ENSGEVG00005019001 #21	SUMO3 (ENSGEVG00005019014) #22	UBE2G2 (ENSGEVG00005019022) #23	TSPEAR (ENSGEVG00005019038) #24	LRRC3 (ENSGEVG00005019061) #25	TRPM2 (ENSGEVG00005019195) #26	CFAP410 (ENSGEVG00005019553) #29	PFKL (ENSGEVG00005019748) #30	PROCR (ENSGEVG00005020012) #31	DNAJB11 (ENSGEVG00005020016) #32	TBCCD1 (ENSGEVG00005020024) #33	CRYGS (ENSGEVG00005020032) #34	SOX14 (ENSGEVG00005020036) #36	CLDN18 (ENSGEVG00005020040) #37	ENSGEVG00005020044	ENSGEVG00005020053	ENSGEVG00005020057
Emydidae	ANCESTRAL SPECIES	3	ENSGT00510000047481	ENSGT00390000003033	ENSGT00940000162486	ENSGT00390000010672	ENSGT00390000006618	ENSGT00940000157516	ENSGT00940000158216	ENSGT00940000162528	ENSGT00940000156285	ENSGT00940000154951	ENSGT00940000154913	ENSGT00950000183009 #18	ENSGT00940000160680 #19	ENSGT00940000156768 #20	ENSGT00390000004977 #21	ENSGT00950000182895.a.b #22	ENSGT00940000158193 #23	ENSGT00510000047718 #24	ENSGT00940000154360.A.b #25	ENSGT00940000156404 #26	ENSGT00390000018807 #29	ENSGT00940000159292 #30	ENSGT00390000001159 #31	ENSGT00940000155792 #32	ENSGT00470000042284 #33	ENSGT00940000160342 #34	ENSGT00940000160749.b #36	ENSGT00940000158655 #37	ENSGT00940000160898	ENSGT00510000047981.d.c	ENSGT00940000155297.a
painted turtle	MODERN SPECIES	776																SUMO3 (ENSCPBG00000000990) #22	UBE2G2 (ENSCPBG00000000961) #23	TSPEAR (ENSCPBG00000000821) #24	LRRC3 (ENSCPBG00000000788) #25	TRPM2 (ENSCPBG00000000683) #26	CFAP410 (ENSCPBG00000000638) #29	PFKL (ENSCPBG00000000606) #30	ENSCPBG00000000582 #31	DNAJB11 (ENSCPBG00000000567) #32	TBCCD1 (ENSCPBG00000000555) #33	ENSCPBG00000000543 #34	CRYGS (ENSCPBG00000000526) #34	RNF7 (ENSCPBG00000000507)	SOX14 (ENSCPBG00000000488) #36	CLDN18 (ENSCPBG00000000452) #37	DZIP1L (ENSCPBG00000000430)
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	384												ENSTMTG00000004920 #18	ETV5 (ENSTMTG00000004932) #19	DGKG (ENSTMTG00000005057) #20	ENSTMTG00000005986 #21	ENSTMTG00000006007 #22	UBE2G2 (ENSTMTG00000006035) #23	TSPEAR (ENSTMTG00000006080) #24	LRRC3 (ENSTMTG00000006208) #25	TRPM2 (ENSTMTG00000006442) #26	CFAP410 (ENSTMTG00000009210) #29	PFKL (ENSTMTG00000009232) #30	PROCR (ENSTMTG00000009275) #31	DNAJB11 (ENSTMTG00000009281) #32	TBCCD1 (ENSTMTG00000009321) #33	CRYGS (ENSTMTG00000009357) #34	SOX14 (ENSTMTG00000009366) #36	CLDN18 (ENSTMTG00000009380) #37	ENSTMTG00000009397	ENSTMTG00000009413	ENSTMTG00000009424
Three-toed box turtle	MODERN SPECIES	90	SMIM5 (ENSTMTG00000015772)	RECQL5 (ENSTMTG00000015741)	ENSTMTG00000015710	ENSTMTG00000015653	LLGL2 (ENSTMTG00000015592)	TSEN54 (ENSTMTG00000015553)	ENSTMTG00000015541	ENSTMTG00000015533	TMEM94 (ENSTMTG00000015482)	GRB2 (ENSTMTG00000015461)	SLC25A19 (ENSTMTG00000015450)	MIF4GD (ENSTMTG00000015427)	MRPS7 (ENSTMTG00000015414)	GGA3 (ENSTMTG00000015393)	NUP85 (ENSTMTG00000015363)	ENSTMTG00000015348 #22	JPT1 (ENSTMTG00000015295)	NT5C (ENSTMTG00000015284)	ENSTMTG00000015278	SLC16A5 (ENSTMTG00000015267)	ENSTMTG00000015211	KCTD2 (ENSTMTG00000015200)	ATP5PD (ENSTMTG00000015190)	MRPL58 (ENSTMTG00000015181)	CDR2L (ENSTMTG00000015174)	HID1 (ENSTMTG00000015149)	OTOP3 (ENSTMTG00000015110)	OTOP2 (ENSTMTG00000015096)	USH1G (ENSTMTG00000015083)	FADS6 (ENSTMTG00000015037)	ENSTMTG00000015000
Chinese turtle	MODERN SPECIES	1233														DGKG (ENSPSIG00000015834) #20	ENSPSIG00000015931 #21	SUMO3 (ENSPSIG00000016097) #22	UBE2G2 (ENSPSIG00000016313) #23	TSPEAR (ENSPSIG00000016342) #24	LRRC3 (ENSPSIG00000006502) #25