Gnathostomata DUPLICATION Gnathostomata ANCESTRAL SPECIES 1111 ENSGT00390000000204 ENSGT00950000182895.a.b #22 ENSGT00390000011596.b Euteleostomi ANCESTRAL SPECIES 524 ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 Sarcopterygii ANCESTRAL SPECIES 90 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b #22 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 ENSGT00940000156964.C ENSGT00390000001244 Tetrapoda ANCESTRAL SPECIES 229 ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b Amniota ANCESTRAL SPECIES 43 ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000155124 ENSGT00940000157773 ENSGT00940000156970 ENSGT00940000158597 ENSGT00940000162100 ENSGT00940000157403 ENSGT00940000156474 ENSGT01030000234527.B Sauria ANCESTRAL SPECIES 9 ENSGT00940000162486 ENSGT00390000010672 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000158216 ENSGT00940000162528 ENSGT00940000156285 ENSGT00940000154951 ENSGT00940000154913 ENSGT00950000183009 ENSGT00940000163340 ENSGT00940000160680 #19 ENSGT00940000156768 #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00390000001159 ENSGT00940000155792 ENSGT00470000042284 ENSGT00940000160342 ENSGT00940000160749.b ENSGT00940000158655 ENSGT00940000160898 ENSGT00510000047981.d ENSGT00940000155297 Archelosauria ANCESTRAL SPECIES 11 ENSGT00510000047481 ENSGT00390000003033 ENSGT00940000162486 ENSGT00390000010672 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000158216 ENSGT00940000162528 ENSGT00940000156285 ENSGT00940000154951 ENSGT00940000154913 ENSGT00950000183009 ENSGT00940000160680 #19 ENSGT00940000156768 #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00390000001159 ENSGT00940000155792 ENSGT00470000042284 ENSGT00940000160342 ENSGT00940000160749.b ENSGT00940000158655 ENSGT00940000160898 ENSGT00510000047981.d ENSGT00940000155297 Archosauria ANCESTRAL SPECIES 60 ENSGT00940000160680 #19 ENSGT00940000156768 #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00390000001159 ENSGT00940000155792 ENSGT00470000042284 ENSGT00940000160342 ENSGT00940000160749.b ENSGT00940000158655 ENSGT00940000160898 ENSGT00510000047981.d ENSGT00940000155297 Aves ANCESTRAL SPECIES 49 ENSGT00940000153241.B #7 ENSGT01050000244976.b.b.b.a.a.b #8 ENSGT00940000160730 #9 ENSGT00460000041648 #10 ENSGT00940000159035 #11 ENSGT00940000162473 #12 ENSGT00940000158551.k.a #13 ENSGT00900000141059 #14 ENSGT00940000155098 #15 ENSGT00940000158642 #16 ENSGT00940000153476.a #17 ENSGT01090000260100.B #18 ENSGT00940000160680 #19 ENSGT00940000156768 #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00940000158447 ENSGT00990000204467 ENSGT00530000063000.a.b.b ENSGT00940000154030.a.a ENSGT00940000158159 ENSGT00550000075086 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT01030000234590.A.a.a ENSGT00390000018687 ENSGT00940000153680.a Neognathae ANCESTRAL SPECIES 9 ENSGT00940000153241.B #7 ENSGT01050000244976.b.b.b.a.a.b #8 ENSGT00940000160730 #9 ENSGT00460000041648 #10 ENSGT00940000159035 #11 ENSGT00940000162473 #12 ENSGT00940000158551.k.a #13 ENSGT00900000141059 #14 ENSGT00940000155098 #15 ENSGT00940000158642 #16 ENSGT00940000153476.a #17 ENSGT01090000260100.B #18 ENSGT00940000160680 #19 ENSGT00940000156768 #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00940000158447 ENSGT00990000204467 ENSGT00530000063000.a.b.b ENSGT00940000154030.a.a ENSGT00940000158159 ENSGT00550000075086 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT01030000234590.A.a.a ENSGT00390000018687 ENSGT00940000153680.a Galloanserae ANCESTRAL SPECIES 33 ENSGT00940000153241.B #7 ENSGT01050000244976.b.b.b.a.a.b #8 ENSGT00940000160730 #9 ENSGT00460000041648 #10 ENSGT00940000159035 #11 ENSGT00940000162473 #12 ENSGT00940000158551.k.a #13 ENSGT00900000141059 #14 ENSGT00940000155098 #15 ENSGT00940000158642 #16 ENSGT00940000153476.a #17 ENSGT01090000260100.B #18 ENSGT00940000160680 #19 ENSGT00940000156768 #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000156404 #25 Anatidae ANCESTRAL SPECIES 29 ENSGT00940000153241.B #7 ENSGT01050000244976.b.b.b.a.a.b #8 ENSGT00940000160730 #9 ENSGT00460000041648 #10 ENSGT00940000159035 #11 ENSGT00940000162473 #12 ENSGT00940000158551.k.a #13 ENSGT00900000141059 #14 ENSGT00940000155098 #15 ENSGT00940000158642 #16 ENSGT00940000153476.a #17 ENSGT01090000260100.B #18 ENSGT00940000160680 #19 ENSGT00940000156768 #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000156404 #25 ENSGT00390000013989.a #26 ENSGT00390000005140.b.b #27 ENSGT00940000160622 #28 ENSGT00530000063529.C #29 ENSGT01030000235073 #30 ENSGT00940000154345.b #31 ENSGT00940000154345.a #32 ENSGT00940000156789 #33 ENSGT00530000063947.B #34 ENSGT00390000013063 #35 ENSGT00940000157650.z.b #36 ENSGT00940000157650.z.a ##36 Pink-footed goose MODERN SPECIES 71 AGXT (ENSABRG00000019657) #7 MAB21L4 (ENSABRG00000019646) #8 SNED1 (ENSABRG00000019626) #9 MTERF4 (ENSABRG00000019613) #10 PASK (ENSABRG00000019573) #11 ENSABRG00000019504 #12 ANO7 (ENSABRG00000019474) #13 HDLBP (ENSABRG00000018659) #14 SEPTIN2 (ENSABRG00000018574) #15 FARP2 (ENSABRG00000017878) #16 STK25 (ENSABRG00000017819) #17 BOK (ENSABRG00000017818) #18 ETV5 (ENSABRG00000017815) #19 DGKG (ENSABRG00000017599) #20 ENSABRG00000017558 #21 SUMO3 (ENSABRG00000017547) #22 UBE2G2 (ENSABRG00000017543) #23 TSPEAR (ENSABRG00000017518) #24 TRPM2 (ENSABRG00000017270) #25 PLEKHB2 (ENSABRG00000017241) #26 FAM168B (ENSABRG00000017240) #27 ENSABRG00000017217 #28 AMER3 (ENSABRG00000017208) #29 ENSABRG00000017205 #30 KLHL6 (ENSABRG00000017201) #31 KLHL24 (ENSABRG00000017197) #32 YEATS2 (ENSABRG00000017179) #33 MAP6D1 (ENSABRG00000017173) #34 PARL (ENSABRG00000017161) #35 ENSABRG00000017158 #36 DUSP28 (ENSABRG00000017152) #37 Phasianidae ANCESTRAL SPECIES 9 ENSGT00940000156474 ENSGT00940000153241.B #7 ENSGT01050000244976.b.b.b.a.a.b #8 ENSGT00940000160730 #9 ENSGT00460000041648 #10 ENSGT00940000159035 #11 ENSGT00940000162473 #12 ENSGT00900000141059 #14 ENSGT00940000155098 #15 ENSGT00940000158642 #16 ENSGT00940000153476.a #17 ENSGT01090000260100.B #18 ENSGT00940000160680 #19 ENSGT00940000156768 #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000156404 #25 ENSGT00950000185905 ENSGT00390000011600 ENSGT00390000000076 ENSGT00940000159828 ENSGT00940000157053.m ENSGT01040000240444.A.b.a.b.fb.b ENSGT01040000240444.A.b.a.b.fb.a ENSGT01040000240444.A.b.a.a ENSGT01040000240444.A.b.b ENSGT00950000183115.a ENSGT00390000004360.a.b.b ENSGT00940000164578 Japanese quail MODERN SPECIES 27 ENSCJPG00005001707 KIF1A (ENSCJPG00005001732) AGXT (ENSCJPG00005002074) #7 MAB21L4 (ENSCJPG00005002089) #8 SNED1 (ENSCJPG00005002116) #9 PASK (ENSCJPG00005002204) #11 ENSCJPG00005002206 #12 HDLBP (ENSCJPG00005002244) #14 SEPTIN2 (ENSCJPG00005004473) #15 FARP2 (ENSCJPG00005004476) #16 STK25 (ENSCJPG00005005276) #17 BOK (ENSCJPG00005005445) #18 ETV5 (ENSCJPG00005005451) #19 DGKG (ENSCJPG00005005455) #20 ENSCJPG00005005475 #21 SUMO3 (ENSCJPG00005005478) #22 UBE2G2 (ENSCJPG00005005480) #23 TSPEAR (ENSCJPG00005005484) #24 TRPM2 (ENSCJPG00005005486) #25 ENSCJPG00005005506 OTOS (ENSCJPG00005005513) COPS9 (ENSCJPG00005005516) ADIPOQ (ENSCJPG00005005522) ST6GAL1 (ENSCJPG00005005531) ENSCJPG00005005538 ENSCJPG00005005540 GPR55 (ENSCJPG00005005542) ENSCJPG00005005545 ITM2C (ENSCJPG00005005549) CAB39 (ENSCJPG00005005578) ENSCJPG00005005581 Phasianidae_b ANCESTRAL SPECIES 12 ENSGT00940000156474 ENSGT00940000153241.B #7 ENSGT01050000244976.b.b.b.a.a.b #8 ENSGT00940000160730 #9 ENSGT00460000041648 #10 ENSGT00940000159035 #11 ENSGT00940000158551.k.b ##13 ENSGT00900000141059 #14 ENSGT00940000155098 #15 ENSGT00940000158642 #16 ENSGT00940000153476.a #17 ENSGT01090000260100.B #18 ENSGT00940000160680 #19 ENSGT00940000156768 #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000156404 #25 ENSGT00950000185905 ENSGT00390000011600 ENSGT00390000000076 ENSGT00940000159828 ENSGT00940000157053.m ENSGT01040000240444.A.b.a.b.fb.b ENSGT01040000240444.A.b.a.b.fb.a ENSGT01040000240444.A.b.a.a ENSGT01040000240444.A.b.b ENSGT00950000183115.a ENSGT00390000004360.a.b.b ENSGT00940000164578 Chicken DUPLICATION Chicken MODERN SPECIES 9 LLGL2 (ENSGALG00010030108) TSEN54 (ENSGALG00010029725) MCHR1 (ENSGALG00010029714) CASKIN2 (ENSGALG00010029711) TMEM94 (ENSGALG00010029708) GRB2 (ENSGALG00010029705) SLC25A19 (ENSGALG00010029704) MIF4GD (ENSGALG00010029703) MRPS7 (ENSGALG00010029701) GGA3 (ENSGALG00010029700) NUP85 (ENSGALG00010029698) SUMO2 (ENSGALG00010029696) #22 ARMC7 (ENSGALG00010029694) HN1 (ENSGALG00010029693) SLC16A5 (ENSGALG00010029687) KCTD2 (ENSGALG00010029686) ATP5H (ENSGALG00010029685) ENSGALG00010029684 MRPL58 (ENSGALG00010029683) CDR2L (ENSGALG00010029682) OTOP3 (ENSGALG00010029680) OTOP2 (ENSGALG00010029679) USH1G (ENSGALG00010029678) FADS6 (ENSGALG00010029676) FDXR (ENSGALG00010029674) GRIN2C (ENSGALG00010029671) HID1 (ENSGALG00010029669) Chicken MODERN SPECIES 38 KIF1A (ENSGALG00010024946) AGXT (ENSGALG00010024959) #7 MAB21L4 (ENSGALG00010024962) #8 SNED1 (ENSGALG00010025389) #9 MTERF4 (ENSGALG00010025403) #10 PASK (ENSGALG00010023299) #11 PPP1R7 (ENSGALG00010023332) ##13 HDLBP (ENSGALG00010023338) #14 SEPTIN2 (ENSGALG00010023354) #15 FARP2 (ENSGALG00010023388) #16 STK25 (ENSGALG00010023442) #17 BOK (ENSGALG00010023473) #18 ETV5 (ENSGALG00010023489) #19 DGKG (ENSGALG00010023519) #20 ENSGALG00010025508 #21 SUMO3 (ENSGALG00010025522) #22 UBE2G2 (ENSGALG00010025553) #23 TSPEAR (ENSGALG00010025563) #24 TRPM2 (ENSGALG00010025575) #25 ENSGALG00010025581 OTOS (ENSGALG00010025591) COPS9 (ENSGALG00010025599) ADIPOQ (ENSGALG00010025618) ST6GAL1 (ENSGALG00010025629) ENSGALG00010025657 ENSGALG00010025648 GPR55 (ENSGALG00010025664) ENSGALG00010025692 ITM2C (ENSGALG00010024964) CAB39 (ENSGALG00010024970) HES6 (ENSGALG00010024997) Neognathae_b ANCESTRAL SPECIES 11 ENSGT00940000156474 ENSGT00940000153241.B #7 ENSGT01050000244976.b.b.b.a.a.b #8 ENSGT00940000160730 #9 ENSGT00460000041648 #10 ENSGT00940000159035 #11 ENSGT00940000162473 #12 ENSGT00900000141059 #14 ENSGT00940000155098 #15 ENSGT00940000158642 #16 ENSGT00940000153476.a #17 ENSGT01090000260100.B #18 ENSGT00940000160680 #19 ENSGT00940000156768 #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00940000158447 ENSGT00990000204467 ENSGT00530000063000.a.b.b ENSGT00940000154030.a.a ENSGT00940000158159 ENSGT00550000075086 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT01030000234590.A.a.a ENSGT00390000018687 ENSGT00940000153680.a Passeriformes ANCESTRAL SPECIES 17 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158025.b ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.b #22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Passeriformes_d ANCESTRAL SPECIES 17 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.b #22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Flycatcher MODERN SPECIES 8 SAP30BP (ENSFALG00000027577) RECQL5 (ENSFALG00000001087) ENSFALG00000001093 ENSFALG00000024516 LLGL2 (ENSFALG00000001115) TSEN54 (ENSFALG00000001119) ENSFALG00000015106 CASKIN2 (ENSFALG00000001125) TMEM94 (ENSFALG00000001137) GRB2 (ENSFALG00000023197) SLC25A19 (ENSFALG00000023937) MIF4GD (ENSFALG00000025719) MRPS7 (ENSFALG00000001162) GGA3 (ENSFALG00000001172) NUP85 (ENSFALG00000001202) ENSFALG00000028956 #22 JPT1 (ENSFALG00000001225) NT5C (ENSFALG00000026242) ENSFALG00000022944 SLC16A5 (ENSFALG00000001231) KCTD2 (ENSFALG00000001233) ATP5PD (ENSFALG00000001236) ENSFALG00000001240 ENSFALG00000001244 CDR2L (ENSFALG00000001251) HID1 (ENSFALG00000001252) OTOP3 (ENSFALG00000001254) OTOP2 (ENSFALG00000001257) USH1G (ENSFALG00000001261) FADS6 (ENSFALG00000001263) ENSFALG00000001271 Great tit MODERN SPECIES 8 SMIM5 (ENSPMJG00000001247) RECQL5 (ENSPMJG00000001223) ENSPMJG00000001212 ENSPMJG00000000845 LLGL2 (ENSPMJG00000000795) TSEN54 (ENSPMJG00000000766) MCHR1 (ENSPMJG00000000758) ENSPMJG00000000725 TMEM94 (ENSPMJG00000000598) GRB2 (ENSPMJG00000000573) SLC25A19 (ENSPMJG00000000566) MIF4GD (ENSPMJG00000000560) MRPS7 (ENSPMJG00000000556) GGA3 (ENSPMJG00000000519) NUP85 (ENSPMJG00000000448) ENSPMJG00000000437 #22 JPT1 (ENSPMJG00000000431) NT5C (ENSPMJG00000000423) SLC16A5 (ENSPMJG00000000412) KCTD2 (ENSPMJG00000000404) ATP5PD (ENSPMJG00000000391) MRPL58 (ENSPMJG00000000387) CDR2L (ENSPMJG00000000365) HID1 (ENSPMJG00000000337) OTOP3 (ENSPMJG00000000258) OTOP2 (ENSPMJG00000000235) USH1G (ENSPMJG00000000224) FDXR (ENSPMJG00000000162) GRIN2C (ENSPMJG00000000130) TMEM104 (ENSPMJG00000000123) NAT9 (ENSPMJG00000000107) Neognathae_c ANCESTRAL SPECIES 13 ENSGT00940000156474 ENSGT00940000153241.B #7 ENSGT01050000244976.b.b.b.a.a.b #8 ENSGT00940000160730 #9 ENSGT00460000041648 #10 ENSGT00940000159035 #11 ENSGT00940000162473 #12 ENSGT00900000141059 #14 ENSGT00940000155098 #15 ENSGT00940000158642 #16 ENSGT00940000153476.a #17 ENSGT01090000260100.B #18 ENSGT00940000160680 #19 ENSGT00940000156768 #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00940000158447 ENSGT00530000063000.a.b.b ENSGT00940000154030.a.a ENSGT00940000158159 ENSGT00550000075086 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT01030000234590.A.a.a ENSGT00390000018687 ENSGT00940000153680.a ENSGT00390000011073 Kakapo MODERN SPECIES 25 ILKAP (ENSSHBG00005018391) KIF1A (ENSSHBG00005018396) AGXT (ENSSHBG00005018413) #7 SNED1 (ENSSHBG00005018420) #9 MTERF4 (ENSSHBG00005018434) #10 PASK (ENSSHBG00005018439) #11 ENSSHBG00005018445 #12 HDLBP (ENSSHBG00005018451) #14 SEPTIN2 (ENSSHBG00005018455) #15 FARP2 (ENSSHBG00005018492) #16 STK25 (ENSSHBG00005019215) #17 BOK (ENSSHBG00005019219) #18 ETV5 (ENSSHBG00005019229) #19 DGKG (ENSSHBG00005019268) #20 ENSSHBG00005019709 #21 SUMO3 (ENSSHBG00005019710) #22 UBE2G2 (ENSSHBG00005019713) #23 TSPEAR (ENSSHBG00005019721) #24 LRRC3 (ENSSHBG00005019730) ENSSHBG00005019732 #25 TRPM2 (ENSSHBG00005019743) #25 THAP4 (ENSSHBG00005019750) ATG4B (ENSSHBG00005019753) DTYMK (ENSSHBG00005019758) ING5 (ENSSHBG00005019761) D2HGDH (ENSSHBG00005019764) GAL3ST2 (ENSSHBG00005019768) NEU4 (ENSSHBG00005019771) TM4SF19 (ENSSHBG00005019776) UBXN7 (ENSSHBG00005000533) RNF168 (ENSSHBG00005000535) Golden eagle MODERN SPECIES 1 KIF1A (ENSACCG00020006922) AGXT (ENSACCG00020006731) #7 MAB21L4 (ENSACCG00020006709) #8 SNED1 (ENSACCG00020006638) #9 MTERF4 (ENSACCG00020006578) #10 PASK (ENSACCG00020006533) #11 ENSACCG00020006487 #12 HDLBP (ENSACCG00020006434) #14 SEPTIN2 (ENSACCG00020006400) #15 FARP2 (ENSACCG00020006362) #16 STK25 (ENSACCG00020006340) #17 BOK (ENSACCG00020006323) #18 ETV5 (ENSACCG00020006267) #19 DGKG (ENSACCG00020006205) #20 ENSACCG00020006180 #21 SUMO3 (ENSACCG00020006165) #22 UBE2G2 (ENSACCG00020006144) #23 TSPEAR (ENSACCG00020006103) #24 LRRC3 (ENSACCG00020006078) TRPM2 (ENSACCG00020006040) #25 THAP4 (ENSACCG00020006021) ATG4B (ENSACCG00020005995) DTYMK (ENSACCG00020005969) ING5 (ENSACCG00020005952) D2HGDH (ENSACCG00020005925) GAL3ST2 (ENSACCG00020005907) NEU4 (ENSACCG00020005884) TM4SF19 (ENSACCG00020005863) UBXN7 (ENSACCG00020005823) RNF168 (ENSACCG00020005790) WDR53 (ENSACCG00020005777) African ostrich DUPLICATION African ostrich MODERN SPECIES 313 RECQL5 (ENSSCUG00000002065) ENSSCUG00000002055 ENSSCUG00000002042 LLGL2 (ENSSCUG00000002031) ENSSCUG00000002025 ENSSCUG00000002022 ENSSCUG00000002020 ENSSCUG00000002019 TMEM94 (ENSSCUG00000002007) GRB2 (ENSSCUG00000002002) SLC25A19 (ENSSCUG00000001999) MIF4GD (ENSSCUG00000001995) MRPS7 (ENSSCUG00000001990) GGA3 (ENSSCUG00000001983) NUP85 (ENSSCUG00000001961) ENSSCUG00000001956 #22 JPT1 (ENSSCUG00000001952) NT5C (ENSSCUG00000001950) African ostrich MODERN SPECIES 280 AGXT (ENSSCUG00000006147) #7 MAB21L4 (ENSSCUG00000006165) #8 SNED1 (ENSSCUG00000006176) #9 PASK (ENSSCUG00000006194) #11 ENSSCUG00000006201 #12 ANO7 (ENSSCUG00000006210) #13 HDLBP (ENSSCUG00000006230) #14 SEPTIN2 (ENSSCUG00000006244) #15 ENSSCUG00000006249 #16 ENSSCUG00000006251 #16 STK25 (ENSSCUG00000006258) #17 BOK (ENSSCUG00000006267) #18 ENSSCUG00000006269 #19 DGKG (ENSSCUG00000006276) #20 ENSSCUG00000006288 #21 ENSSCUG00000006292 #22 UBE2G2 (ENSSCUG00000006297) #23 TSPEAR (ENSSCUG00000006301) #24 LRRC3 (ENSSCUG00000006303) TRPM2 (ENSSCUG00000006306) #25 Australian saltwater crocodile MODERN SPECIES 30 ETV5 (ENSCPRG00005005052) #19 DGKG (ENSCPRG00005005031) #20 ENSCPRG00005005020 #21 SUMO3 (ENSCPRG00005005013) #22 UBE2G2 (ENSCPRG00005005006) #23 TSPEAR (ENSCPRG00005004982) #24 LRRC3 (ENSCPRG00005004974) ENSCPRG00005004955 #25 ENSCPRG00005004881 #25 ENSCPRG00005004842 #25 CFAP410 (ENSCPRG00005004834) PFKL (ENSCPRG00005004812) ENSCPRG00005004806 DNAJB11 (ENSCPRG00005004800) TBCCD1 (ENSCPRG00005004793) CAB39 (ENSCPRG00005004789) PER2 (ENSCPRG00005004773) ENSCPRG00005004754 PIK3CB (ENSCPRG00005004745) Cryptodira ANCESTRAL SPECIES 37 ENSGT00510000047481 ENSGT00390000003033 ENSGT00940000162486 ENSGT00390000010672 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000158216 ENSGT00940000162528 ENSGT00940000156285 ENSGT00940000154951 ENSGT00940000154913 ENSGT00950000183009 ENSGT00940000160680 #19 ENSGT00940000156768 #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00390000001159 ENSGT00940000155792 ENSGT00470000042284 ENSGT00940000160342 ENSGT00940000160749.b ENSGT00940000158655 ENSGT00940000160898 ENSGT00510000047981.d ENSGT00940000155297 Chinese turtle MODERN SPECIES 1233 DGKG (ENSPSIG00000015834) #20 ENSPSIG00000015931 #21 SUMO3 (ENSPSIG00000016097) #22 UBE2G2 (ENSPSIG00000016313) #23 TSPEAR (ENSPSIG00000016342) #24 LRRC3 (ENSPSIG00000006502) Testudinoidea ANCESTRAL SPECIES 9 ENSGT00510000047481 ENSGT00390000003033 ENSGT00940000162486 ENSGT00390000010672 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000158216 ENSGT00940000162528 ENSGT00940000156285 ENSGT00940000154951 ENSGT00940000154913 ENSGT00950000183009 ENSGT00940000160680 #19 ENSGT00940000156768 #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00390000001159 ENSGT00940000155792 ENSGT00470000042284 ENSGT00940000160342 ENSGT00940000160749.b ENSGT00940000158655 ENSGT00940000160898 ENSGT00510000047981.d.d ENSGT00510000047981.d.c Emydidae ANCESTRAL SPECIES 3 ENSGT00510000047481 ENSGT00390000003033 ENSGT00940000162486 ENSGT00390000010672 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000158216 ENSGT00940000162528 ENSGT00940000156285 ENSGT00940000154951 ENSGT00940000154913 ENSGT00950000183009 ENSGT00940000160680 #19 ENSGT00940000156768 #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00390000001159 ENSGT00940000155792 ENSGT00470000042284 ENSGT00940000160342 ENSGT00940000160749.b ENSGT00940000158655 ENSGT00940000160898 ENSGT00510000047981.d.c ENSGT00940000155297.a painted turtle MODERN SPECIES 776 SUMO3 (ENSCPBG00000000990) #22 UBE2G2 (ENSCPBG00000000961) #23 TSPEAR (ENSCPBG00000000821) #24 LRRC3 (ENSCPBG00000000788) TRPM2 (ENSCPBG00000000683) #25 CFAP410 (ENSCPBG00000000638) PFKL (ENSCPBG00000000606) ENSCPBG00000000582 DNAJB11 (ENSCPBG00000000567) TBCCD1 (ENSCPBG00000000555) ENSCPBG00000000543 CRYGS (ENSCPBG00000000526) RNF7 (ENSCPBG00000000507) SOX14 (ENSCPBG00000000488) CLDN18 (ENSCPBG00000000452) DZIP1L (ENSCPBG00000000430) Three-toed box turtle DUPLICATION Three-toed box turtle MODERN SPECIES 384 ENSTMTG00000004920 ETV5 (ENSTMTG00000004932) #19 DGKG (ENSTMTG00000005057) #20 ENSTMTG00000005986 #21 ENSTMTG00000006007 #22 UBE2G2 (ENSTMTG00000006035) #23 TSPEAR (ENSTMTG00000006080) #24 LRRC3 (ENSTMTG00000006208) TRPM2 (ENSTMTG00000006442) #25 CFAP410 (ENSTMTG00000009210) PFKL (ENSTMTG00000009232) PROCR (ENSTMTG00000009275) DNAJB11 (ENSTMTG00000009281) TBCCD1 (ENSTMTG00000009321) CRYGS (ENSTMTG00000009357) SOX14 (ENSTMTG00000009366) CLDN18 (ENSTMTG00000009380) ENSTMTG00000009397 ENSTMTG00000009413 ENSTMTG00000009424 Three-toed box turtle MODERN SPECIES 90 SMIM5 (ENSTMTG00000015772) RECQL5 (ENSTMTG00000015741) ENSTMTG00000015710 ENSTMTG00000015653 LLGL2 (ENSTMTG00000015592) TSEN54 (ENSTMTG00000015553) ENSTMTG00000015541 ENSTMTG00000015533 TMEM94 (ENSTMTG00000015482) GRB2 (ENSTMTG00000015461) SLC25A19 (ENSTMTG00000015450) MIF4GD (ENSTMTG00000015427) MRPS7 (ENSTMTG00000015414) GGA3 (ENSTMTG00000015393) NUP85 (ENSTMTG00000015363) ENSTMTG00000015348 #22 JPT1 (ENSTMTG00000015295) NT5C (ENSTMTG00000015284) ENSTMTG00000015278 SLC16A5 (ENSTMTG00000015267) ENSTMTG00000015211 KCTD2 (ENSTMTG00000015200) ATP5PD (ENSTMTG00000015190) MRPL58 (ENSTMTG00000015181) CDR2L (ENSTMTG00000015174) HID1 (ENSTMTG00000015149) OTOP3 (ENSTMTG00000015110) OTOP2 (ENSTMTG00000015096) USH1G (ENSTMTG00000015083) FADS6 (ENSTMTG00000015037) ENSTMTG00000015000 Testudinidae ANCESTRAL SPECIES 7 ENSGT00510000047481 ENSGT00390000003033 ENSGT00940000162486 ENSGT00390000010672 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000158216 ENSGT00940000162528 ENSGT00940000156285 ENSGT00940000154951 ENSGT00940000154913 ENSGT00950000183009 ENSGT00940000160680 #19 ENSGT00940000156768 #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00390000001159 ENSGT00940000155792 ENSGT00470000042284 ENSGT00940000160342 ENSGT00940000160749.b ENSGT00940000158655 ENSGT00940000160898 ENSGT00510000047981.d.d ENSGT00510000047981.d.c Abingdon island giant tortoise MODERN SPECIES 247 TRA2B (ENSCABG00000021776) ETV5 (ENSCABG00000021753) #19 DGKG (ENSCABG00000021705) #20 ENSCABG00000021701 #21 SUMO3 (ENSCABG00000021700) #22 UBE2G2 (ENSCABG00000021699) #23 TSPEAR (ENSCABG00000021695) #24 LRRC3 (ENSCABG00000021692) ENSCABG00000021687 #25 ENSCABG00000021624 #25 ENSCABG00000021610 #25 CFAP410 (ENSCABG00000021604) PFKL (ENSCABG00000020197) ENSCABG00000020025 DNAJB11 (ENSCABG00000019987) TBCCD1 (ENSCABG00000019974) CRYGS (ENSCABG00000019935) ENSCABG00000019930 SOX14 (ENSCABG00000019927) CLDN18 (ENSCABG00000019924) Goode s thornscrub tortoise MODERN SPECIES 23 ENSGEVG00005017215 DBR1 (ENSGEVG00005017237) ARMC8 (ENSGEVG00005017273) VPS8 (ENSGEVG00005017396) C3orf70 (ENSGEVG00005017547) EHHADH (ENSGEVG00005017560) MAP3K13 (ENSGEVG00005017580) TMEM41A (ENSGEVG00005017612) LIPH (ENSGEVG00005017629) SENP2 (ENSGEVG00005017716) IGF2BP2 (ENSGEVG00005017746) TRA2B (ENSGEVG00005017784) ETV5 (ENSGEVG00005017806) #19 DGKG (ENSGEVG00005018029) #20 ENSGEVG00005019001 #21 SUMO3 (ENSGEVG00005019014) #22 UBE2G2 (ENSGEVG00005019022) #23 TSPEAR (ENSGEVG00005019038) #24 LRRC3 (ENSGEVG00005019061) TRPM2 (ENSGEVG00005019195) #25 CFAP410 (ENSGEVG00005019553) PFKL (ENSGEVG00005019748) PROCR (ENSGEVG00005020012) DNAJB11 (ENSGEVG00005020016) TBCCD1 (ENSGEVG00005020024) CRYGS (ENSGEVG00005020032) SOX14 (ENSGEVG00005020036) CLDN18 (ENSGEVG00005020040) ENSGEVG00005020044 ENSGEVG00005020053 ENSGEVG00005020057 Lepidosauria ANCESTRAL SPECIES 48 ENSGT00940000162486 ENSGT00390000010672 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000158216 ENSGT00940000163412 ENSGT00940000162528 ENSGT00940000156285 ENSGT00940000154951 ENSGT00940000154913 ENSGT00950000183009 ENSGT00940000163340 ENSGT00940000160680 #19 ENSGT00940000156768 #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00390000001159 ENSGT00940000155792 ENSGT00470000042284 ENSGT00940000160342 ENSGT00940000160749.b ENSGT00940000158655 ENSGT00940000160898 ENSGT00510000047981.d ENSGT00940000155297 tuatara DUPLICATION tuatara MODERN SPECIES 1429 RECQL5 (ENSSPUG00000008872) ENSSPUG00000008902 ENSSPUG00000008907 ENSSPUG00000008914 ENSSPUG00000008936 LLGL2 (ENSSPUG00000008946) TSEN54 (ENSSPUG00000008988) ENSSPUG00000009000 ENSSPUG00000009007 GRB2 (ENSSPUG00000009161) SLC25A19 (ENSSPUG00000009266) MIF4GD (ENSSPUG00000009304) MRPS7 (ENSSPUG00000009313) GGA3 (ENSSPUG00000009334) NUP85 (ENSSPUG00000009393) ENSSPUG00000009419 #22 ENSSPUG00000009437 NT5C (ENSSPUG00000009455) ENSSPUG00000009466 SLC16A5 (ENSSPUG00000009476) ENSSPUG00000009502 ENSSPUG00000009537 ATP5PD (ENSSPUG00000009550) MRPL58 (ENSSPUG00000009563) CDR2L (ENSSPUG00000009573) HID1 (ENSSPUG00000009600) USH1G (ENSSPUG00000009717) FADS6 (ENSSPUG00000009733) ENSSPUG00000009776 GRIN2C (ENSSPUG00000009945) TMEM104 (ENSSPUG00000009993) tuatara MODERN SPECIES 1136 ENSSPUG00000014259 #20 ENSSPUG00000014247 #21 ENSSPUG00000014238 #22 UBE2G2 (ENSSPUG00000014223) #23 TSPEAR (ENSSPUG00000014192) #24 LRRC3 (ENSSPUG00000014179) ENSSPUG00000014147 #25 ENSSPUG00000014099 #25 Episquamata ANCESTRAL SPECIES 2 ENSGT00950000182972.a.a.a.b ENSGT00940000157741 ENSGT00940000153249.b.d ENSGT00940000162486 ENSGT00390000010672 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000158216 ENSGT00940000163412 ENSGT00940000154951 ENSGT00940000154913 ENSGT00950000183009 ENSGT00940000160680 #19 ENSGT00940000156768 #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00390000001159 ENSGT00940000155792 ENSGT00470000042284 ENSGT00940000160342 ENSGT00940000160749.b ENSGT00940000158655 ENSGT00940000160898 ENSGT00510000047981.d ENSGT00940000155297 Toxicofera ANCESTRAL SPECIES 2 ENSGT00950000182972.a.a.a.b ENSGT00940000157741 ENSGT00940000153249.b.d ENSGT00940000162486 ENSGT00390000010672 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000158216 ENSGT00940000163412 ENSGT00940000154951 ENSGT00940000154913 ENSGT00950000183009 ENSGT00940000160680 #19 ENSGT00940000156768 #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00390000001159 ENSGT00940000155792 ENSGT00470000042284 ENSGT00940000160342 ENSGT00940000160749.b ENSGT00940000158655 ENSGT00940000160898 ENSGT00510000047981.d ENSGT00940000155297 Lizard DUPLICATION Lizard MODERN SPECIES 1 ENSACAG00000039759 ENSACAG00000036517 ENSACAG00000006818 LLGL2 (ENSACAG00000006728) TSEN54 (ENSACAG00000006714) ENSACAG00000036665 CASKIN2 (ENSACAG00000006671) TMEM94 (ENSACAG00000006582) ENSACAG00000041425 GRB2 (ENSACAG00000006524) SLC25A19 (ENSACAG00000006493) MIF4GD (ENSACAG00000006463) MRPS7 (ENSACAG00000006441) GGA3 (ENSACAG00000006288) NUP85 (ENSACAG00000006230) ENSACAG00000006212 #22 JPT1 (ENSACAG00000006208) NT5C (ENSACAG00000028622) ENSACAG00000006197 SLC16A5 (ENSACAG00000006160) ENSACAG00000006147 KCTD2 (ENSACAG00000006112) ATP5PD (ENSACAG00000006092) ENSACAG00000044373 ENSACAG00000039326 MRPL58 (ENSACAG00000006044) CDR2L (ENSACAG00000005998) HID1 (ENSACAG00000005900) OTOP3 (ENSACAG00000005877) ENSACAG00000038598 OTOP2 (ENSACAG00000005863) Lizard MODERN SPECIES 2 ENSACAG00000007593 ENSACAG00000007713 VPS8 (ENSACAG00000007715) C3orf70 (ENSACAG00000034562) ENSACAG00000043530 EHHADH (ENSACAG00000007778) MAP3K13 (ENSACAG00000007817) ENSACAG00000007904 SENP2 (ENSACAG00000007929) IGF2BP2 (ENSACAG00000007995) TRA2B (ENSACAG00000044734) ETV5 (ENSACAG00000008128) #19 ENSACAG00000042474 DGKG (ENSACAG00000008171) #20 ENSACAG00000008261 #21 SUMO3 (ENSACAG00000008281) #22 UBE2G2 (ENSACAG00000040929) #23 ENSACAG00000008283 #23 TSPEAR (ENSACAG00000008325) #24 LRRC3 (ENSACAG00000008369) TRPM2 (ENSACAG00000008372) #25 CFAP410 (ENSACAG00000008678) PFKL (ENSACAG00000008680) ENSACAG00000009038 dnajb11 (ENSACAG00000036360) ENSACAG00000009103 CRYGS (ENSACAG00000009129) SOX14 (ENSACAG00000009132) CLDN18 (ENSACAG00000009163) DZIP1L (ENSACAG00000009191) A4GNT (ENSACAG00000009237) Elapidae ANCESTRAL SPECIES 4 ENSGT00940000157741 ENSGT00940000153249.b.d ENSGT00940000162486 ENSGT00390000010672 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000158216 ENSGT00940000163412 ENSGT00940000154951 ENSGT00940000154913 ENSGT00950000183009 ENSGT00940000160680 #19 ENSGT00940000156768.s.b #20 ENSGT00940000156768.s.a #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00390000001159 ENSGT00940000155792 ENSGT00470000042284 ENSGT00940000160342 ENSGT00940000160749.b ENSGT00940000158655 ENSGT00940000160898 ENSGT00510000047981.d ENSGT00940000155297 Elapidae_a ANCESTRAL SPECIES ENSGT00950000182972.a.a.a.b ENSGT00940000157741 ENSGT00940000153249.b.d ENSGT00940000162486 ENSGT00390000010672 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000158216 ENSGT00940000163412 ENSGT00940000154951 ENSGT00940000154913 ENSGT00950000183009 ENSGT00940000160680 #19 ENSGT00940000156768.s.a #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718.a #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00390000001159 ENSGT00940000155792 ENSGT00470000042284 ENSGT00940000160342 ENSGT00940000160749.b ENSGT00940000158655 ENSGT00940000160898 ENSGT00510000047981.d ENSGT00940000155297 Blue-lipped sea krait MODERN SPECIES 422 ENSLLTG00000001032 #21 SUMO3 (ENSLLTG00000001044) #22 ENSLLTG00000001054 ENSLLTG00000001061 Acanthophiinae ANCESTRAL SPECIES 1 ENSGT00950000182972.a.a.a.b ENSGT00940000157741 ENSGT00940000153249.b.d ENSGT00940000162486 ENSGT00390000010672 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000158216 ENSGT00940000163412 ENSGT00940000154951 ENSGT00940000154913 ENSGT00950000183009 ENSGT00940000160680 #19 ENSGT00940000156768.s.a #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718.a #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00390000001159 ENSGT00940000155792 ENSGT00470000042284 ENSGT00940000160342 ENSGT00940000160749.b ENSGT00940000158655 ENSGT00940000160898 ENSGT00510000047981.d ENSGT00940000155297 Mainland tiger snake MODERN SPECIES MSL2 (ENSNSUG00000013037) STAG1 (ENSNSUG00000013039) PCCB (ENSNSUG00000013110) SLC35G2 (ENSNSUG00000013156) VPS8 (ENSNSUG00000013157) C3orf70 (ENSNSUG00000013159) EHHADH (ENSNSUG00000013160) MAP3K13 (ENSNSUG00000013161) ENSNSUG00000013177 SENP2 (ENSNSUG00000013178) IGF2BP2 (ENSNSUG00000013179) TRA2B (ENSNSUG00000013180) ETV5 (ENSNSUG00000013185) #19 DGKG (ENSNSUG00000013210) #20 ENSNSUG00000013211 #21 SUMO3 (ENSNSUG00000013212) #22 UBE2G2 (ENSNSUG00000013213) #23 TSPEAR (ENSNSUG00000013214) #24 LRRC3 (ENSNSUG00000013215) ENSNSUG00000013216 #25 ENSNSUG00000013217 #25 CFAP410 (ENSNSUG00000013218) PFKL (ENSNSUG00000013221) ENSNSUG00000013416 DNAJB11 (ENSNSUG00000013417) TBCCD1 (ENSNSUG00000013419) CRYGS (ENSNSUG00000013420) SOX14 (ENSNSUG00000013421) CLDN18 (ENSNSUG00000013423) ENSNSUG00000013425 A4GNT (ENSNSUG00000013427) Eastern brown snake MODERN SPECIES 16 STAG1 (ENSPTXG00000018621) PCCB (ENSPTXG00000018623) SLC35G2 (ENSPTXG00000018625) ENSPTXG00000018627 VPS8 (ENSPTXG00000018632) C3orf70 (ENSPTXG00000018811) EHHADH (ENSPTXG00000018812) MAP3K13 (ENSPTXG00000018813) ENSPTXG00000018814 SENP2 (ENSPTXG00000018815) IGF2BP2 (ENSPTXG00000018816) TRA2B (ENSPTXG00000018817) ETV5 (ENSPTXG00000018818) #19 DGKG (ENSPTXG00000018819) #20 ENSPTXG00000018820 #21 SUMO3 (ENSPTXG00000018821) #22 UBE2G2 (ENSPTXG00000018822) #23 TSPEAR (ENSPTXG00000018823) #24 LRRC3 (ENSPTXG00000018824) TRPM2 (ENSPTXG00000018825) #25 CFAP410 (ENSPTXG00000018826) PFKL (ENSPTXG00000018827) ENSPTXG00000018831 DNAJB11 (ENSPTXG00000018833) TBCCD1 (ENSPTXG00000018835) CRYGS (ENSPTXG00000018837) SOX14 (ENSPTXG00000018839) CLDN18 (ENSPTXG00000018840) ENSPTXG00000018842 A4GNT (ENSPTXG00000018844) EPHB1 (ENSPTXG00000018847) Laterata ANCESTRAL SPECIES ENSGT00940000157741 ENSGT00940000153249.b.d ENSGT00940000162486 ENSGT00390000010672 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000158216 ENSGT00940000162528 ENSGT00940000163412 ENSGT00940000154951 ENSGT00940000154913 ENSGT00950000183009 ENSGT00940000160680 #19 ENSGT00940000156768 #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00390000001159 ENSGT00940000155792 ENSGT00470000042284 ENSGT00940000160342 ENSGT00940000160749.b ENSGT00940000158655 ENSGT00940000160898 ENSGT00510000047981.d ENSGT00940000155297 Common wall lizard MODERN SPECIES 10 ITGB4 (ENSPMRG00000003570) SAP30BP (ENSPMRG00000003194) RECQL5 (ENSPMRG00000003180) ENSPMRG00000003157 LLGL2 (ENSPMRG00000002877) TSEN54 (ENSPMRG00000002771) ENSPMRG00000002756 ENSPMRG00000002745 TMEM94 (ENSPMRG00000015187) GRB2 (ENSPMRG00000015175) SLC25A19 (ENSPMRG00000015170) MIF4GD (ENSPMRG00000015162) MRPS7 (ENSPMRG00000015158) GGA3 (ENSPMRG00000014536) NUP85 (ENSPMRG00000014342) ENSPMRG00000014280 #22 NT5C (ENSPMRG00000014259) ENSPMRG00000014252 SLC16A5 (ENSPMRG00000014242) ENSPMRG00000014219 ENSPMRG00000014213 ATP5PD (ENSPMRG00000014204) ENSPMRG00000014198 CDR2L (ENSPMRG00000014153) HID1 (ENSPMRG00000014039) OTOP3 (ENSPMRG00000013982) OTOP2 (ENSPMRG00000013965) USH1G (ENSPMRG00000013957) FADS6 (ENSPMRG00000013951) ENSPMRG00000013934 GRIN2C (ENSPMRG00000013920) Argentine black and white tegu MODERN SPECIES 19 STAG1 (ENSSMRG00000022083) PCCB (ENSSMRG00000022084) SLC35G2 (ENSSMRG00000022085) ENSSMRG00000022086 VPS8 (ENSSMRG00000022087) C3orf70 (ENSSMRG00000022089) EHHADH (ENSSMRG00000022090) MAP3K13 (ENSSMRG00000022091) TMEM41A (ENSSMRG00000022092) SENP2 (ENSSMRG00000022093) IGF2BP2 (ENSSMRG00000022094) TRA2B (ENSSMRG00000022095) ETV5 (ENSSMRG00000022097) #19 DGKG (ENSSMRG00000022098) #20 ENSSMRG00000022099 #21 SUMO3 (ENSSMRG00000022100) #22 UBE2G2 (ENSSMRG00000022101) #23 TSPEAR (ENSSMRG00000022102) #24 LRRC3 (ENSSMRG00000022103) ENSSMRG00000022104 #25 ENSSMRG00000022105 #25 CFAP410 (ENSSMRG00000022119) PFKL (ENSSMRG00000022120) ENSSMRG00000022122 DNAJB11 (ENSSMRG00000022123) TBCCD1 (ENSSMRG00000022124) CRYGS (ENSSMRG00000022126) SOX14 (ENSSMRG00000022136) CLDN18 (ENSSMRG00000022137) DZIP1L (ENSSMRG00000022138) A4GNT (ENSSMRG00000022139) Mammalia ANCESTRAL SPECIES 7 ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000163601 ENSGT00940000162768.B ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000155124 ENSGT00940000157773 ENSGT00940000156970 ENSGT00940000158597 ENSGT00940000162100 ENSGT00940000157403 ENSGT00940000156474 ENSGT01030000234527.B Platypus MODERN SPECIES 18 MCM3AP (ENSOANG00000013563) LSS (ENSOANG00000013565) ENSOANG00000000806 FTCD (ENSOANG00000013566) ENSOANG00000046435 COL6A2 (ENSOANG00000013567) ENSOANG00000006264 ENSOANG00000006265 ENSOANG00000000668 ENSOANG00000043147 POFUT2 (ENSOANG00000012784) ADARB1 (ENSOANG00000012491) ENSOANG00000046464 ITGB2 (ENSOANG00000000415) PTTG1IP (ENSOANG00000050465) #21 SUMO3 (ENSOANG00000046747) #22 UBE2G2 (ENSOANG00000050814) #23 ENSOANG00000042127 ENSOANG00000021786 ENSOANG00000048603 ENSOANG00000039296 ENSOANG00000044087 TSPEAR (ENSOANG00000015571) #24 LRRC3 (ENSOANG00000015573) TRPM2 (ENSOANG00000015574) #25 CFAP410 (ENSOANG00000015576) ENSOANG00000045904 ENSOANG00000015577 ENSOANG00000036914 ENSOANG00000051084 ENSOANG00000015583 Theria ANCESTRAL SPECIES 58 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00940000163601 ENSGT00940000162768.B ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00940000163258 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000155124 Marsupialia ANCESTRAL SPECIES 31 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00940000163601 ENSGT00940000162768.B ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00940000163258 ENSGT00940000163441 ENSGT00960000188864 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000163494.a.b.h ENSGT00940000159292 Opossum MODERN SPECIES 1 ENSMODG00000047193 ENSMODG00000040170 ENSMODG00000020813 ENSMODG00000041496 ENSMODG00000038569 ENSMODG00000051394 ENSMODG00000037649 ENSMODG00000003482 ENSMODG00000008473 ENSMODG00000039017 ENSMODG00000044599 ENSMODG00000050747 DGKD (ENSMODG00000003088) ITGB2 (ENSMODG00000003456) ENSMODG00000003425 #21 ENSMODG00000037820 #22 UBE2G2 (ENSMODG00000003406) #23 ENSMODG00000041526 ENSMODG00000049970 ENSMODG00000036597 ENSMODG00000041835 ENSMODG00000045266 ENSMODG00000037809 ENSMODG00000023091 ENSMODG00000039663 ENSMODG00000003218 ENSMODG00000023099 ENSMODG00000040790 ENSMODG00000046303 ENSMODG00000003134 #25 ENSMODG00000003082 Marsupialia_b ANCESTRAL SPECIES 16 ENSGT01100000263555.b ENSGT00390000007870.a ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b #22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.w ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Diprotodontia ANCESTRAL SPECIES 9 ENSGT01100000263555.b ENSGT00390000007870.a ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b #22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.w ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Diprotodontia_a ANCESTRAL SPECIES 11 ENSGT01100000263555.b ENSGT00390000007870.a ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b #22 ENSGT00940000162422.b ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.w ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Common wonbat MODERN SPECIES 1017 EIF4EBP1 (ENSVURG00010010388) ASH2L (ENSVURG00010010263) STAR (ENSVURG00010010240) LSM1 (ENSVURG00010010225) BAG4 (ENSVURG00010010211) DDHD2 (ENSVURG00010010168) PLPP5 (ENSVURG00010010146) NSD3 (ENSVURG00010010113) ENSVURG00010010093 FGFR1 (ENSVURG00010010009) TACC1 (ENSVURG00010009968) ENSVURG00010009947 ENSVURG00010009936 TM2D2 (ENSVURG00010009921) ADAM9 (ENSVURG00010009903) ENSVURG00010009875 #22 IDO1 (ENSVURG00010009857) ENSVURG00010009852 IDO2 (ENSVURG00010009838) TCIM (ENSVURG00010009828) ZMAT4 (ENSVURG00010009820) SFRP1 (ENSVURG00010009807) ENSVURG00010009804 GOLGA7 (ENSVURG00010009798) GINS4 (ENSVURG00010009794) ENSVURG00010009790 GPAT4 (ENSVURG00010009782) NKX6-3 (ENSVURG00010009774) ANK1 (ENSVURG00010009661) KAT6A (ENSVURG00010009624) AP3M2 (ENSVURG00010009602) koala DUPLICATION koala MODERN SPECIES 97 GALK1 (ENSPCIG00000020372) ITGB4 (ENSPCIG00000020375) ENSPCIG00000020395 RECQL5 (ENSPCIG00000020398) SMIM5 (ENSPCIG00000020404) ENSPCIG00000020414 LLGL2 (ENSPCIG00000023942) CASKIN2 (ENSPCIG00000020459) TMEM94 (ENSPCIG00000020473) GRB2 (ENSPCIG00000020065) SLC25A19 (ENSPCIG00000004843) MIF4GD (ENSPCIG00000004836) MRPS7 (ENSPCIG00000004824) GGA3 (ENSPCIG00000004778) NUP85 (ENSPCIG00000004754) ENSPCIG00000033629 #22 ENSPCIG00000004735 NT5C (ENSPCIG00000004729) ENSPCIG00000004716 SLC16A5 (ENSPCIG00000004707) ENSPCIG00000004696 ENSPCIG00000031337 ATP5PD (ENSPCIG00000004673) MRPL58 (ENSPCIG00000004667) CDR2L (ENSPCIG00000004662) HID1 (ENSPCIG00000004650) OTOP3 (ENSPCIG00000004641) OTOP2 (ENSPCIG00000004636) USH1G (ENSPCIG00000004624) FADS6 (ENSPCIG00000004616) FDXR (ENSPCIG00000004605) koala MODERN SPECIES 20 BCL11A (ENSPCIG00000028097) PAPOLG (ENSPCIG00000028094) REL (ENSPCIG00000028091) PUS10 (ENSPCIG00000028089) PEX13 (ENSPCIG00000028088) SANBR (ENSPCIG00000028080) ENSPCIG00000028078 ENSPCIG00000028076 USP34 (ENSPCIG00000027791) XPO1 (ENSPCIG00000027737) ENSPCIG00000024939 ENSPCIG00000024933 ENSPCIG00000024931 COMMD1 (ENSPCIG00000024929) ENSPCIG00000018941 #22 B3GNT2 (ENSPCIG00000024925) TMEM17 (ENSPCIG00000024919) EHBP1 (ENSPCIG00000005257) OTX1 (ENSPCIG00000024582) ENSPCIG00000037374 WDPCP (ENSPCIG00000024581) MDH1 (ENSPCIG00000024579) UGP2 (ENSPCIG00000022314) VPS54 (ENSPCIG00000022325) PELI1 (ENSPCIG00000022340) LGALSL (ENSPCIG00000020092) ENSPCIG00000025803 AFTPH (ENSPCIG00000025802) SERTAD2 (ENSPCIG00000025805) SLC1A4 (ENSPCIG00000023205) Eutheria ANCESTRAL SPECIES 5 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00940000163601 ENSGT00940000162768.B ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00940000163258 ENSGT00940000163845 ENSGT00940000158579 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 Atlantogenata ANCESTRAL SPECIES 92 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00940000158579 ENSGT00940000163845 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a Afrotheria ANCESTRAL SPECIES 109 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00940000158579 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b Afrotheria_a ANCESTRAL SPECIES 115 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00940000158579 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b Elephant MODERN SPECIES 513 ITGB2 (ENSLAFG00000028448) PTTG1IP (ENSLAFG00000016707) #21 SUMO3 (ENSLAFG00000001967) #22 UBE2G2 (ENSLAFG00000001963) #23 ENSLAFG00000032616 ENSLAFG00000003471 ENSLAFG00000012968 ENSLAFG00000020961 TSPEAR (ENSLAFG00000012959) #24 LRRC3 (ENSLAFG00000005181) TRPM2 (ENSLAFG00000007900) #25 CFAP410 (ENSLAFG00000000609) PFKL (ENSLAFG00000021471) AIRE (ENSLAFG00000008582) DNMT3L (ENSLAFG00000031621) ENSLAFG00000016007 GATD3 (ENSLAFG00000003876) PWP2 (ENSLAFG00000003871) Xenarthra ANCESTRAL SPECIES ENSGT00950000182895.a.b #22 Armadillo MODERN SPECIES 1403 ENSDNOG00000034717 ENSDNOG00000035086 ENSDNOG00000047824 #22 ENSDNOG00000031851 ENSDNOG00000042242 ENSDNOG00000033116 ADGRL3 (ENSDNOG00000007471) TECRL (ENSDNOG00000008713) ENSDNOG00000046958 ENSDNOG00000042105 Boreoeutheria DUPLICATION Boreoeutheria DUPLICATION Boreoeutheria ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.a #22 Laurasiatheria ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.a #22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.a #22 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.a #22 Carnivora ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.a #22 Caniformia ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.a #22 Caniformia_b ANCESTRAL SPECIES 20 ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b.i.a #22 ENSGT00940000164037 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.r ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b Ursidae ANCESTRAL SPECIES 19 ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b.i.a #22 ENSGT00940000164037 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.r ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b Giant Panda MODERN SPECIES 4 ITGB4 (ENSAMEG00000009619) SAP30BP (ENSAMEG00000009518) SMIM5 (ENSAMEG00000009617) RECQL5 (ENSAMEG00000009566) MYO15B (ENSAMEG00000027824) LLGL2 (ENSAMEG00000009430) TSEN54 (ENSAMEG00000009414) CASKIN2 (ENSAMEG00000009400) TMEM94 (ENSAMEG00000009346) GRB2 (ENSAMEG00000009339) SLC25A19 (ENSAMEG00000009328) MIF4GD (ENSAMEG00000009313) MRPS7 (ENSAMEG00000009287) GGA3 (ENSAMEG00000009242) NUP85 (ENSAMEG00000009192) ENSAMEG00000030788 #22 ENSAMEG00000009184 ENSAMEG00000009175 SLC16A5 (ENSAMEG00000009160) ENSAMEG00000009143 ENSAMEG00000024925 ATP5PD (ENSAMEG00000009115) MRPL58 (ENSAMEG00000027504) CDR2L (ENSAMEG00000025577) HID1 (ENSAMEG00000009062) OTOP3 (ENSAMEG00000009052) USH1G (ENSAMEG00000009036) ENSAMEG00000026196 ENSAMEG00000008997 ENSAMEG00000031052 ENSAMEG00000025104 Artiodactyla ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.a #22 Artiodactyla_a ANCESTRAL SPECIES 3 ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b.i.a #22 ENSGT01070000255137 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 Artiodactyla_b ANCESTRAL SPECIES 3 ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b.i.a #22 ENSGT01070000255137 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 Pecora ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.a #22 Percora_a ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.a #22 Bovidae ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.a #22 Bovinae ANCESTRAL SPECIES ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b.i.a #22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00390000003582.p ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b American bison MODERN SPECIES 3285 ITGB4 (ENSBBBG00000005640) SAP30BP (ENSBBBG00000021035) SMIM5 (ENSBBBG00000021056) RECQL5 (ENSBBBG00000021117) MYO15B (ENSBBBG00000021484) LLGL2 (ENSBBBG00000021610) TSEN54 (ENSBBBG00000021631) CASKIN2 (ENSBBBG00000021684) TMEM94 (ENSBBBG00000021836) GRB2 (ENSBBBG00000005799) SLC25A19 (ENSBBBG00000021969) ENSBBBG00000021980 MRPS7 (ENSBBBG00000022001) GGA3 (ENSBBBG00000022100) NUP85 (ENSBBBG00000022127) ENSBBBG00000022135 #22 ENSBBBG00000022173 ENSBBBG00000005852 ENSBBBG00000022193 SLC16A5 (ENSBBBG00000022204) ENSBBBG00000022217 ENSBBBG00000022243 ATP5PD (ENSBBBG00000005864) MRPL58 (ENSBBBG00000022261) CDR2L (ENSBBBG00000022283) HID1 (ENSBBBG00000005873) ENSBBBG00000005884 ENSBBBG00000005885 USH1G (ENSBBBG00000022331) ENSBBBG00000005892 FADS6 (ENSBBBG00000022340) Boreoeutheria DUPLICATION Boreoeutheria ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.b.a #22 Euarchontoglires ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.b.a #22 Euarchontoglires_A ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.b.a #22 Glires ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.b.a #22 Rodentia ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.b.a #22 Rodentia_A ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.b.a #22 Sciuridae ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.b.a #22 Marmotini ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.b.a #22 Alpin marmot MODERN SPECIES 1 IPO4 (ENSMMMG00000012109) REC8 (ENSMMMG00000012150) IRF9 (ENSMMMG00000012177) RNF31 (ENSMMMG00000012192) PSME2 (ENSMMMG00000012264) EMC9 (ENSMMMG00000012288) PSME1 (ENSMMMG00000012296) FITM1 (ENSMMMG00000012384) DCAF11 (ENSMMMG00000012392) PCK2 (ENSMMMG00000012681) NRL (ENSMMMG00000012717) CPNE6 (ENSMMMG00000012724) CARMIL3 (ENSMMMG00000012792) ENSMMMG00000012839 DHRS2 (ENSMMMG00000012876) ENSMMMG00000013059 #22 ENSMMMG00000013062 JPH4 (ENSMMMG00000013123) AP1G2 (ENSMMMG00000013142) THTPA (ENSMMMG00000013179) ZFHX2 (ENSMMMG00000013186) NGDN (ENSMMMG00000013200) MYH7 (ENSMMMG00000013220) ENSMMMG00000013308 CMTM5 (ENSMMMG00000013324) IL25 (ENSMMMG00000013338) EFS (ENSMMMG00000013356) SLC22A17 (ENSMMMG00000013391) PABPN1 (ENSMMMG00000013456) BCL2L2 (ENSMMMG00000013458) PPP1R3E (ENSMMMG00000013472) Laurasiatheria ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.b.a #22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.b.a #22 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.b.a #22 Carnivora ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.b.a #22 Caniformia ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.b.a #22 Caniformia_b ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.b.a #22 Ursidae ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.b.a #22 Giant Panda MODERN SPECIES SPICE1 (ENSAMEG00000005162) SIDT1 (ENSAMEG00000005184) USF3 (ENSAMEG00000005235) NAA50 (ENSAMEG00000005243) ATP6V1A (ENSAMEG00000005255) GRAMD1C (ENSAMEG00000005286) ZDHHC23 (ENSAMEG00000005320) CCDC191 (ENSAMEG00000005336) QTRT2 (ENSAMEG00000005349) DRD3 (ENSAMEG00000005377) TIGIT (ENSAMEG00000005401) ZBTB20 (ENSAMEG00000005407) GAP43 (ENSAMEG00000029486) ENSAMEG00000005712 LSAMP (ENSAMEG00000005718) ENSAMEG00000009189 #22 IGSF11 (ENSAMEG00000007326) ENSAMEG00000026121 UPK1B (ENSAMEG00000007300) B4GALT4 (ENSAMEG00000007283) ARHGAP31 (ENSAMEG00000007278) TMEM39A (ENSAMEG00000007256) POGLUT1 (ENSAMEG00000007227) TIMMDC1 (ENSAMEG00000007212) CD80 (ENSAMEG00000007201) ADPRH (ENSAMEG00000027500) PLA1A (ENSAMEG00000007170) POPDC2 (ENSAMEG00000007148) COX17 (ENSAMEG00000029657) CFAP91 (ENSAMEG00000007087) NR1I2 (ENSAMEG00000007006) Boreoeutheria ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.b.b #22 Euarchontoglires ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.b.b #22 Euarchontoglires_A ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.b.b #22 Glires ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.b.b #22 Rodentia ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.b.b #22 Rodentia_A ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.b.b #22 Sciuridae ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.b.b #22 Marmotini ANCESTRAL SPECIES ENSGT00950000182895.a.b.i.b.b #22 Alpin marmot MODERN SPECIES FOXA2 (ENSMMMG00000004350) PAX1 (ENSMMMG00000004326) NKX2-2 (ENSMMMG00000004284) XRN2 (ENSMMMG00000004161) KIZ (ENSMMMG00000003881) ENSMMMG00000003871 RALGAPA2 (ENSMMMG00000003453) ENSMMMG00000003417 ENSMMMG00000003408 ENSMMMG00000003290 CRNKL1 (ENSMMMG00000003244) NAA20 (ENSMMMG00000003240) RIN2 (ENSMMMG00000003172) SLC24A3 (ENSMMMG00000003105) SCP2D1 (ENSMMMG00000003079) ENSMMMG00000003073 #22 DTD1 (ENSMMMG00000003060) SMIM26 (ENSMMMG00000003045) SEC23B (ENSMMMG00000003024) RBBP9 (ENSMMMG00000003013) POLR3F (ENSMMMG00000002996) DZANK1 (ENSMMMG00000002954) ZNF133 (ENSMMMG00000002935) KAT14 (ENSMMMG00000002887) OVOL2 (ENSMMMG00000002853) MGME1 (ENSMMMG00000002827) SNX5 (ENSMMMG00000002770) BANF2 (ENSMMMG00000002735) RRBP1 (ENSMMMG00000002621) DSTN (ENSMMMG00000002604) BFSP1 (ENSMMMG00000002526) Boreoeutheria ANCESTRAL SPECIES 2 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000155183 ENSGT00940000158579 ENSGT00940000163845 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 Euarchontoglires ANCESTRAL SPECIES 2 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000163258 ENSGT00940000163845 ENSGT00940000158579 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 Primates ANCESTRAL SPECIES 1 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b.s ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000163258 ENSGT00940000163845 ENSGT00940000158579 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 Haplorrhini ANCESTRAL SPECIES 22 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b.s ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000163258.i ENSGT00940000163845 ENSGT00940000158579 ENSGT00940000163527 ENSGT00940000164049 ENSGT00940000163258.j ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 Tarsier MODERN SPECIES 7124 LLGL2 (ENSTSYG00000027056) TSEN54 (ENSTSYG00000037439) CASKIN2 (ENSTSYG00000026592) TMEM94 (ENSTSYG00000033397) GRB2 (ENSTSYG00000031708) SLC25A19 (ENSTSYG00000010346) MIF4GD (ENSTSYG00000025585) MRPS7 (ENSTSYG00000009380) GGA3 (ENSTSYG00000010581) NUP85 (ENSTSYG00000010481) ENSTSYG00000035255 #22 ENSTSYG00000003938 ENSTSYG00000030661 ARMC7 (ENSTSYG00000012602) SLC16A5 (ENSTSYG00000027596) ENSTSYG00000034337 ATP5H (ENSTSYG00000030194) MRPL58 (ENSTSYG00000013235) CDR2L (ENSTSYG00000029560) HID1 (ENSTSYG00000025635) OTOP3 (ENSTSYG00000037315) OTOP2 (ENSTSYG00000036808) USH1G (ENSTSYG00000026004) FADS6 (ENSTSYG00000000345) FDXR (ENSTSYG00000026975) Simiiformes ANCESTRAL SPECIES 1 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b.s ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000158579.l.a ENSGT00940000163258.i.a ENSGT00940000163845.c ENSGT00940000163258.i.b ENSGT00940000158579.l.b.b.b ENSGT00940000163258.j ENSGT00940000158579.l.b.b.a ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 Catarrhini DUPLICATION Catarrhini DUPLICATION Catarrhini ANCESTRAL SPECIES ENSGT00950000182895.a.b.j.a.a #22 Cercopithecidae ANCESTRAL SPECIES ENSGT00950000182895.a.b.j.a.a #22 Cercopithecinae ANCESTRAL SPECIES ENSGT00950000182895.a.b.j.a.a #22 Cercopithecinae_a ANCESTRAL SPECIES ENSGT00950000182895.a.b.j.a.a #22 Cercopithecinae_b ANCESTRAL SPECIES 29 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b.s ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j.a.a #22 ENSGT00940000158193 #23 ENSGT00940000163527.c.d ENSGT00940000163527.d ENSGT00940000163527.c.c ENSGT00940000158579.l.b.b.b ENSGT00940000163258.i.b ENSGT00940000163845.c ENSGT00940000158579.l.b.b.a.e ENSGT00940000158579.l.b.b.a.f ENSGT00940000158579.l.b.a ENSGT00940000158579.l.a ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 Cercopithecinae_d ANCESTRAL SPECIES 36 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b.s ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j.a.a #22 ENSGT00940000158193 #23 ENSGT00940000158579.l.a ENSGT00940000163527.c.d ENSGT00940000163527.c.c ENSGT00940000158579.l.b.b.b ENSGT00940000163258.i.b ENSGT00940000163845.c ENSGT00940000158579.l.b.b.a.e ENSGT00940000158579.l.b.b.a.f ENSGT00940000158579.l.b.a ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 Drill MODERN SPECIES 1420 SLC19A1 (ENSMLEG00000032396) COL18A1 (ENSMLEG00000042137) POFUT2 (ENSMLEG00000039268) ADARB1 (ENSMLEG00000033846) SLX9 (ENSMLEG00000042676) ITGB2 (ENSMLEG00000037129) PTTG1IP (ENSMLEG00000033830) #21 ENSMLEG00000041321 #22 UBE2G2 (ENSMLEG00000032164) #23 ENSMLEG00000006261 ENSMLEG00000033801 ENSMLEG00000038049 ENSMLEG00000023838 ENSMLEG00000031813 KRTAP10-7 (ENSMLEG00000038502) ENSMLEG00000041386 ENSMLEG00000038480 ENSMLEG00000034784 TSPEAR (ENSMLEG00000035979) #24 ENSMLEG00000031061 ENSMLEG00000040298 LRRC3 (ENSMLEG00000001984) TRPM2 (ENSMLEG00000009280) #25 Catarrhini ANCESTRAL SPECIES ENSGT00950000182895.a.b.j.a.b #22 Cercopithecidae ANCESTRAL SPECIES ENSGT00950000182895.a.b.j.a.b #22 Rhinopithecus ANCESTRAL SPECIES 24 ENSGT00390000007870 ENSGT00940000157800 ENSGT00940000165228 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902.c ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b.j.a.b #22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00910000147493 ENSGT00940000158336 ENSGT00390000003582.e.c ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00390000013574 Golden snub-nosed monkey MODERN SPECIES 2632 SAP30BP (ENSRROG00000041616) RECQL5 (ENSRROG00000043301) SMIM6 (ENSRROG00000006702) SMIM5 (ENSRROG00000041071) MYO15B (ENSRROG00000044616) LLGL2 (ENSRROG00000044594) TSEN54 (ENSRROG00000030797) CASKIN2 (ENSRROG00000033523) TMEM94 (ENSRROG00000035918) GRB2 (ENSRROG00000040617) ENSRROG00000028519 MIF4GD (ENSRROG00000033599) MRPS7 (ENSRROG00000028554) GGA3 (ENSRROG00000034700) NUP85 (ENSRROG00000034070) ENSRROG00000033666 #22 ENSRROG00000031610 ENSRROG00000030020 NT5C (ENSRROG00000033470) ARMC7 (ENSRROG00000014155) SLC16A5 (ENSRROG00000045514) KCTD2 (ENSRROG00000044059) ATP5PD (ENSRROG00000041340) ENSRROG00000010716 CDR2L (ENSRROG00000043209) HID1 (ENSRROG00000029110) OTOP3 (ENSRROG00000033489) OTOP2 (ENSRROG00000026399) USH1G (ENSRROG00000031837) FDXR (ENSRROG00000041952) GRIN2C (ENSRROG00000039210) Cercopithecinae ANCESTRAL SPECIES ENSGT00950000182895.a.b.j.a.b #22 Cercopithecinae_a ANCESTRAL SPECIES ENSGT00950000182895.a.b.j.a.b #22 Cercopithecinae_b ANCESTRAL SPECIES 19 ENSGT00390000007870 ENSGT00940000157800 ENSGT00940000165228 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b.j.a.b #22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000158336.y ENSGT00390000003582.e.c.c.a.b ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Cercopithecinae_d ANCESTRAL SPECIES 15 ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT01100000263915.D ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b.j.a.b #22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000158336.y ENSGT00390000003582.e.c.c.a.b ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Drill MODERN SPECIES 65 SAP30BP (ENSMLEG00000029210) SMIM5 (ENSMLEG00000030911) RECQL5 (ENSMLEG00000033070) ENSMLEG00000043467 LLGL2 (ENSMLEG00000038952) TSEN54 (ENSMLEG00000044168) CASKIN2 (ENSMLEG00000028492) TMEM94 (ENSMLEG00000040372) GRB2 (ENSMLEG00000033030) ENSMLEG00000024923 SLC25A19 (ENSMLEG00000040542) MIF4GD (ENSMLEG00000031604) MRPS7 (ENSMLEG00000032202) GGA3 (ENSMLEG00000040759) NUP85 (ENSMLEG00000036306) ENSMLEG00000032713 #22 ENSMLEG00000037373 ENSMLEG00000028530 NT5C (ENSMLEG00000032500) SLC16A5 (ENSMLEG00000029978) ENSMLEG00000043153 ENSMLEG00000029365 ENSMLEG00000026116 CDR2L (ENSMLEG00000039727) HID1 (ENSMLEG00000034321) OTOP3 (ENSMLEG00000031468) OTOP2 (ENSMLEG00000032852) USH1G (ENSMLEG00000031673) ENSMLEG00000043118 FDXR (ENSMLEG00000042243) GRIN2C (ENSMLEG00000037748) Hominoidea ANCESTRAL SPECIES ENSGT00950000182895.a.b.j.a.b #22 Hominidae ANCESTRAL SPECIES ENSGT00950000182895.a.b.j.a.b #22 Orangutan MODERN SPECIES 12 MCM3AP (ENSPPYG00000011532) LSS (ENSPPYG00000011530) SPATC1L (ENSPPYG00000011529) FTCD (ENSPPYG00000011528) COL6A2 (ENSPPYG00000011527) COL6A1 (ENSPPYG00000034634) PCBP3 (ENSPPYG00000011525) SLC19A1 (ENSPPYG00000011523) ENSPPYG00000011521 POFUT2 (ENSPPYG00000011516) ADARB1 (ENSPPYG00000011514) SLX9 (ENSPPYG00000011509) ENSPPYG00000031942 ITGB2 (ENSPPYG00000011506) PTTG1IP (ENSPPYG00000036754) #21 ENSPPYG00000011503 #22 UBE2G2 (ENSPPYG00000035359) #23 KRTAP10-12 (ENSPPYG00000011501) ENSPPYG00000033473 KRTAP12-3 (ENSPPYG00000011499) KRTAP10-11 (ENSPPYG00000011497) KRTAP10-10 (ENSPPYG00000011496) KRTAP10-9 (ENSPPYG00000011495) KRTAP10-8 (ENSPPYG00000011494) KRTAP10-7 (ENSPPYG00000011493) ENSPPYG00000038597 KRTAP10-5 (ENSPPYG00000011492) ENSPPYG00000039780 KRTAP10-3 (ENSPPYG00000037806) TSPEAR (ENSPPYG00000011488) #24 LRRC3 (ENSPPYG00000011486) Catarrhini ANCESTRAL SPECIES 25 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b.s ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j.b #22 ENSGT00940000158193 #23 ENSGT00940000158579.l.a ENSGT00940000163258.i.a ENSGT00940000163845.c ENSGT00940000163258.i.b ENSGT00940000158579.l.b.b.b ENSGT00940000163258.j ENSGT00940000158579.l.b.b.a ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 Cercopithecidae ANCESTRAL SPECIES 28 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b.s ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j.b #22 ENSGT00940000158193 #23 ENSGT00940000158579.l.a ENSGT00940000163258.j ENSGT00940000158579.l.b.b.b ENSGT00940000163258.i.b ENSGT00940000163845.c ENSGT00940000158579.l.b.b.a.e ENSGT00940000158579.l.b.b.a.f ENSGT00940000158579.l.b.a ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 Rhinopithecus ANCESTRAL SPECIES 210 ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162768.B ENSGT00940000162185 ENSGT00950000183022.b.s ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j.b #22 ENSGT00940000158193 #23 ENSGT00940000158579.l.a ENSGT00940000163258.j ENSGT00940000158579.l.b.b.b Golden snub-nosed monkey MODERN SPECIES 864 ITGB2 (ENSRROG00000044361) PTTG1IP (ENSRROG00000039905) #21 ENSRROG00000029146 ENSRROG00000045338 #22 UBE2G2 (ENSRROG00000029493) #23 ENSRROG00000029984 ENSRROG00000014285 ENSRROG00000039336 KRTAP10-10 (ENSRROG00000045098) ENSRROG00000029893 KRTAP10-8 (ENSRROG00000030367) ENSRROG00000039236 ENSRROG00000036053 ENSRROG00000034471 KRTAP10-3 (ENSRROG00000018457) TSPEAR (ENSRROG00000041561) #24 LRRC3 (ENSRROG00000033768) TRPM2 (ENSRROG00000033191) #25 CFAP410 (ENSRROG00000045512) Black snub-nosed monkey DUPLICATION Black snub-nosed monkey MODERN SPECIES 924 COL6A2 (ENSRBIG00000038516) COL6A1 (ENSRBIG00000044937) ENSRBIG00000028177 SLC19A1 (ENSRBIG00000042544) COL18A1 (ENSRBIG00000030037) POFUT2 (ENSRBIG00000037445) ADARB1 (ENSRBIG00000033033) SLX9 (ENSRBIG00000035044) ITGB2 (ENSRBIG00000031250) PTTG1IP (ENSRBIG00000036920) #21 SUMO3 (ENSRBIG00000031989) #22 UBE2G2 (ENSRBIG00000026486) #23 TSPEAR (ENSRBIG00000032685) #24 ENSRBIG00000018796 ENSRBIG00000030166 ENSRBIG00000036000 ENSRBIG00000043765 ENSRBIG00000040008 ENSRBIG00000029901 ENSRBIG00000039496 KRTAP10-2 (ENSRBIG00000029279) ENSRBIG00000013411 LRRC3 (ENSRBIG00000013619) TRPM2 (ENSRBIG00000042457) #25 CFAP410 (ENSRBIG00000036434) PFKL (ENSRBIG00000024591) Black snub-nosed monkey MODERN SPECIES 2888 ENSRBIG00000033331 #22 Cercopithecinae ANCESTRAL SPECIES 23 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b.s ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00900000140979.a.a.`b.a.o.a ENSGT00390000003873 ENSGT00910000147401 ENSGT00950000182836.b.b.b.a Vervet Monkey DUPLICATION Vervet Monkey MODERN SPECIES 17 EDEM3 (ENSCSAG00000012843) NIBAN1 (ENSCSAG00000012855) RNF2 (ENSCSAG00000012868) TRMT1L (ENSCSAG00000012880) SWT1 (ENSCSAG00000012895) IVNS1ABP (ENSCSAG00000012909) ENSCSAG00000000246 HMCN1 (ENSCSAG00000013167) PRG4 (ENSCSAG00000013272) TPR (ENSCSAG00000013292) ODR4 (ENSCSAG00000013300) PDC (ENSCSAG00000013308) PTGS2 (ENSCSAG00000013318) PLA2G4A (ENSCSAG00000013326) ENSCSAG00000013330 ENSCSAG00000000247 #22 BRINP3 (ENSCSAG00000013346) RGS18 (ENSCSAG00000013348) RGS21 (ENSCSAG00000013355) RGS1 (ENSCSAG00000013361) RGS13 (ENSCSAG00000013367) RGS2 (ENSCSAG00000013370) ENSCSAG00000013381 UCHL5 (ENSCSAG00000013393) RO60 (ENSCSAG00000013402) GLRX2 (ENSCSAG00000013413) B3GALT2 (ENSCSAG00000000248) CDC73 (ENSCSAG00000013431) KCNT2 (ENSCSAG00000013529) CFH (ENSCSAG00000013551) CFHR4 (ENSCSAG00000013559) Vervet Monkey MODERN SPECIES 11 FTCD (ENSCSAG00000007233) COL6A2 (ENSCSAG00000007240) ENSCSAG00000007389 ENSCSAG00000007424 ENSCSAG00000007430 ENSCSAG00000007440 SLC19A1 (ENSCSAG00000007456) ENSCSAG00000007471 POFUT2 (ENSCSAG00000007479) ADARB1 (ENSCSAG00000007489) ENSCSAG00000007491 ENSCSAG00000000274 SLX9 (ENSCSAG00000007496) ITGB2 (ENSCSAG00000007501) PTTG1IP (ENSCSAG00000007510) #21 ENSCSAG00000007518 #22 UBE2G2 (ENSCSAG00000007533) #23 ENSCSAG00000007540 KRTAP12-3 (ENSCSAG00000000275) KRTAP12-4 (ENSCSAG00000000276) KRTAP10-8 (ENSCSAG00000007546) KRTAP10-4 (ENSCSAG00000007551) KRTAP10-3 (ENSCSAG00000007561) ENSCSAG00000007568 TSPEAR (ENSCSAG00000007591) #24 LRRC3 (ENSCSAG00000000277) TRPM2 (ENSCSAG00000007727) #25 CFAP410 (ENSCSAG00000007805) PFKL (ENSCSAG00000007817) AIRE (ENSCSAG00000007836) DNMT3L (ENSCSAG00000007863) Cercopithecinae_a DUPLICATION Cercopithecinae_a DUPLICATION Cercopithecinae_a ANCESTRAL SPECIES ENSGT00950000182895.a.b.j.b.e.a #22 Macaca ANCESTRAL SPECIES ENSGT00950000182895.a.b.j.b.e.a #22 Macaca_a ANCESTRAL SPECIES 15 ENSGT00940000154864.b ENSGT00940000155564 ENSGT00940000156568 ENSGT00950000183166.a.a.a.b ENSGT00910000144152.a.b.t ENSGT00900000141103 ENSGT00440000033965 ENSGT00940000155559.b ENSGT00390000012785 ENSGT00390000018199.b.b.a ENSGT00390000014001.a ENSGT00940000164709.a.b.b.a.a.b.a.a.a.a.a.a.a.b.b ENSGT00940000157837 ENSGT00940000157361 ENSGT01100000263543.a.g.a.a.a.a ENSGT00950000182895.a.b.j.b.e.a #22 ENSGT00940000158042 ENSGT00390000005537 ENSGT01100000263539.b.a.a.a.b.b.b.a.b.b.a.a.b ENSGT00940000156983.a.a ENSGT00940000156467 ENSGT01100000263493.a.b.a.a.a.a.a.a.a.a.a.a.a.a.a.a ENSGT00940000158732 ENSGT00390000018318.u.b.a.b.a.a.a ENSGT00390000007529 ENSGT00390000016883 ENSGT00390000008178 ENSGT00390000004911 ENSGT00940000157344 ENSGT00940000158659 ENSGT00940000153408.B Crab-eating macaque MODERN SPECIES 4 ENSMFAG00000055004 CLHC1 (ENSMFAG00000039539) ENSMFAG00000037923 MTIF2 (ENSMFAG00000044949) ENSMFAG00000043775 ENSMFAG00000055613 CCDC88A (ENSMFAG00000037041) CFAP36 (ENSMFAG00000010897) PPP4R3B (ENSMFAG00000037701) PNPT1 (ENSMFAG00000001927) ENSMFAG00000058693 EFEMP1 (ENSMFAG00000044235) CCDC85A (ENSMFAG00000044378) ENSMFAG00000061252 ENSMFAG00000048944 SUMO3 (ENSMFAG00000009821) #22 VRK2 (ENSMFAG00000031394) FANCL (ENSMFAG00000042101) ENSMFAG00000057303 ENSMFAG00000050088 BCL11A (ENSMFAG00000016402) ENSMFAG00000047975 ENSMFAG00000044508 ENSMFAG00000052777 PAPOLG (ENSMFAG00000042450) ENSMFAG00000056134 REL (ENSMFAG00000038696) ENSMFAG00000064635 PUS10 (ENSMFAG00000000611) PEX13 (ENSMFAG00000042959) SANBR (ENSMFAG00000007392) Rhesus MODERN SPECIES 4 EML6 (ENSMMUG00000021296) RTN4 (ENSMMUG00000021299) CLHC1 (ENSMMUG00000011346) RPS27A (ENSMMUG00000015563) MTIF2 (ENSMMUG00000030833) ENSMMUG00000019075 CCDC88A (ENSMMUG00000003003) CFAP36 (ENSMMUG00000007000) PPP4R3B (ENSMMUG00000007001) PNPT1 (ENSMMUG00000007003) ENSMMUG00000060312 EFEMP1 (ENSMMUG00000016872) ENSMMUG00000056218 CCDC85A (ENSMMUG00000015888) ENSMMUG00000064261 ENSMMUG00000002024 #22 VRK2 (ENSMMUG00000002025) ENSMMUG00000064756 FANCL (ENSMMUG00000002026) ENSMMUG00000060918 BCL11A (ENSMMUG00000011303) PAPOLG (ENSMMUG00000000498) ENSMMUG00000057135 REL (ENSMMUG00000010834) ENSMMUG00000055963 PUS10 (ENSMMUG00000005685) ENSMMUG00000052940 PEX13 (ENSMMUG00000005687) SANBR (ENSMMUG00000021990) C13H2orf74 (ENSMMUG00000041555) AHSA2 (ENSMMUG00000008097) Cercopithecinae_b ANCESTRAL SPECIES 15 ENSGT00390000011103.A ENSGT00390000005045 ENSGT00940000154864.b ENSGT00940000155564 ENSGT00940000156568 ENSGT00950000183166.a.a.a.b ENSGT00910000144152.a.b.t ENSGT00900000141103 ENSGT00440000033965 ENSGT00940000155559.b ENSGT00390000012785 ENSGT00390000018199.b.b.a ENSGT00390000014001.a.b ENSGT00940000157837 ENSGT00940000157361 ENSGT00950000182895.a.b.j.b.e.a #22 ENSGT00940000158042 ENSGT00390000005537 ENSGT00530000063174.a.i.f ENSGT00940000156983.a.a ENSGT01030000234579.A.b.w ENSGT00390000008802.m.a.a ENSGT00940000156467 ENSGT00940000158732 ENSGT00390000007529 ENSGT00390000016883 ENSGT00390000008178 ENSGT00390000004911 ENSGT00940000157344 ENSGT00940000158659 ENSGT00940000155413.l.a.b Olive baboon MODERN SPECIES 5 EML6 (ENSPANG00000004287) RTN4 (ENSPANG00000005683) CLHC1 (ENSPANG00000016915) RPS27A (ENSPANG00000034863) MTIF2 (ENSPANG00000014549) ENSPANG00000000623 CCDC88A (ENSPANG00000021274) PPP4R3B (ENSPANG00000022844) CFAP36 (ENSPANG00000022522) ENSPANG00000038384 ENSPANG00000031278 EFEMP1 (ENSPANG00000022521) ENSPANG00000041504 ENSPANG00000043733 CCDC85A (ENSPANG00000016914) ENSPANG00000010717 #22 VRK2 (ENSPANG00000014544) FANCL (ENSPANG00000021497) ENSPANG00000021826 BCL11A (ENSPANG00000018170) ENSPANG00000000672 PAPOLG (ENSPANG00000014543) REL (ENSPANG00000006148) PUS10 (ENSPANG00000018036) PEX13 (ENSPANG00000022181) ENSPANG00000017323 ENSPANG00000039323 C2orf74 (ENSPANG00000035894) ENSPANG00000016913 USP34 (ENSPANG00000025375) XPO1 (ENSPANG00000006892) Cercopithecinae_a ANCESTRAL SPECIES ENSGT00950000182895.a.b.j.b.e.b #22 Macaca ANCESTRAL SPECIES ENSGT00950000182895.a.b.j.b.e.b #22 Macaca_a ANCESTRAL SPECIES ENSGT00950000182895.a.b.j.b.e.b #22 Rhesus MODERN SPECIES 13 ENSMMUG00000064313 SPATC1L (ENSMMUG00000058335) FTCD (ENSMMUG00000022324) COL6A2 (ENSMMUG00000022317) ENSMMUG00000055486 COL6A1 (ENSMMUG00000000544) PCBP3 (ENSMMUG00000003825) SLC19A1 (ENSMMUG00000004477) COL18A1 (ENSMMUG00000004472) POFUT2 (ENSMMUG00000010700) ADARB1 (ENSMMUG00000010695) ENSMMUG00000061023 SLX9 (ENSMMUG00000000953) ITGB2 (ENSMMUG00000000951) PTTG1IP (ENSMMUG00000046352) #21 SUMO3 (ENSMMUG00000048545) #22 UBE2G2 (ENSMMUG00000045077) #23 TSPEAR (ENSMMUG00000022556) #24 ENSMMUG00000022561 KRTAP10-9 (ENSMMUG00000043221) KRTAP10-8 (ENSMMUG00000048049) ENSMMUG00000030497 ENSMMUG00000022558 KRTAP10-10 (ENSMMUG00000022559) LRRC3 (ENSMMUG00000049755) TRPM2 (ENSMMUG00000004175) #25 CFAP410 (ENSMMUG00000049578) PFKL (ENSMMUG00000004173) AIRE (ENSMMUG00000004168) DNMT3L (ENSMMUG00000010648) ICOSLG (ENSMMUG00000010647) Cercopithecinae_a ANCESTRAL SPECIES 22 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b.s ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j.b.f #22 ENSGT00940000158193 #23 ENSGT00940000163527.c.d ENSGT00940000163527.d ENSGT00940000164049.b.a ENSGT00940000163527.c.c ENSGT00940000158579.l.b.b.b ENSGT00940000163258.i.b ENSGT00940000163845.c ENSGT00940000158579.l.a ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 Macaca ANCESTRAL SPECIES 3 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b.s ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j.b.f #22 ENSGT00940000158193 #23 ENSGT00940000163527.c.d ENSGT00940000164049.b.a ENSGT00940000163258.i.b ENSGT00940000163845.c ENSGT00940000158579.l.b.a ENSGT00510000047718 #24 ENSGT00940000158579.l.b.b.a.e ENSGT00940000158579.l.a ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 Macaca_a ANCESTRAL SPECIES 22 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000163601 ENSGT00940000162185 ENSGT00950000183022.b.s ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j.b.f #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000163527.c.d ENSGT00940000164049.b.a ENSGT00940000163258.i.b ENSGT00940000158579.l.b.a ENSGT00940000158579.l.b.b.a.e ENSGT00940000163845.d ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 Crab-eating macaque MODERN SPECIES 13 MCM3AP (ENSMFAG00000041104) LSS (ENSMFAG00000034060) SPATC1L (ENSMFAG00000031624) FTCD (ENSMFAG00000039806) ENSMFAG00000060948 ENSMFAG00000003504 PCBP3 (ENSMFAG00000034574) ENSMFAG00000053223 ENSMFAG00000056786 SLC19A1 (ENSMFAG00000041513) ENSMFAG00000003616 ADARB1 (ENSMFAG00000011312) SLX9 (ENSMFAG00000037615) ITGB2 (ENSMFAG00000036141) PTTG1IP (ENSMFAG00000033191) #21 ENSMFAG00000032355 #22 UBE2G2 (ENSMFAG00000057431) #23 TSPEAR (ENSMFAG00000001348) #24 KRTAP10-7 (ENSMFAG00000051280) KRTAP10-9 (ENSMFAG00000053657) KRTAP10-4 (ENSMFAG00000031679) LRRC3 (ENSMFAG00000028969) TRPM2 (ENSMFAG00000001773) #25 CFAP410 (ENSMFAG00000049270) PFKL (ENSMFAG00000037062) AIRE (ENSMFAG00000001488) DNMT3L (ENSMFAG00000046145) ICOSLG (ENSMFAG00000040533) GATD3 (ENSMFAG00000046334) PWP2 (ENSMFAG00000044448) TRAPPC10 (ENSMFAG00000041704) Cercopithecinae_b ANCESTRAL SPECIES ENSGT00950000182895.a.b.j.b.f #22 Cercopithecinae_d ANCESTRAL SPECIES 188 ENSGT00950000182895.a.b.j.b.f #22 ENSGT00940000156099 ENSGT00940000161034 ENSGT00940000161004 ENSGT00940000157316 ENSGT00940000158520 ENSGT00940000157937 ENSGT00910000148155 ENSGT00940000155195 ENSGT00390000006200 ENSGT00940000162420 ENSGT00390000001114 ENSGT00940000155117.f.a ENSGT00940000158746.b ENSGT00910000148101 ENSGT00940000163274.d Sooty mangabey MODERN SPECIES 167 ENSCATG00000036885 ENSCATG00000030122 #22 BRINP3 (ENSCATG00000015477) RGS18 (ENSCATG00000036533) RGS21 (ENSCATG00000030362) RGS1 (ENSCATG00000031319) RGS13 (ENSCATG00000040203) RGS2 (ENSCATG00000037692) ENSCATG00000016891 UCHL5 (ENSCATG00000035323) RO60 (ENSCATG00000027732) GLRX2 (ENSCATG00000018043) B3GALT2 (ENSCATG00000015456) CDC73 (ENSCATG00000041073) ENSCATG00000039300 KCNT2 (ENSCATG00000036589) ENSCATG00000033803 Drill MODERN SPECIES 1156 ENSMLEG00000029614 ENSMLEG00000036410 #22 BRINP3 (ENSMLEG00000035514) RGS18 (ENSMLEG00000033035) RGS21 (ENSMLEG00000033245) RGS1 (ENSMLEG00000034600) RGS13 (ENSMLEG00000042866) RGS2 (ENSMLEG00000031978) ENSMLEG00000027624 UCHL5 (ENSMLEG00000030039) RO60 (ENSMLEG00000040042) GLRX2 (ENSMLEG00000036985) CDC73 (ENSMLEG00000035219) B3GALT2 (ENSMLEG00000004708) Hominoidea ANCESTRAL SPECIES 26 ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b.s ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT00390000018577 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j.b #22 ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00940000158193 #23 ENSGT00940000158579.l.a ENSGT00940000163258.i.a.a ENSGT00940000163527.c.a ENSGT00940000163527.d ENSGT00960000187213 ENSGT00940000165026 ENSGT00940000164049.b.a ENSGT00940000163258.i.b ENSGT00940000158579.l.b.a ENSGT00940000163845.d ENSGT00940000158579.l.b.b.a ENSGT00940000163845.c ENSGT00940000163258.i.a.b Hominidae ANCESTRAL SPECIES 25 ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b.s ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT00390000018577 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j.b #22 ENSGT00940000158193 #23 ENSGT00940000163258.i.a.a ENSGT00940000163527.c.a ENSGT00940000163527.d ENSGT00960000187213 ENSGT00940000165026.b ENSGT00940000163845.d ENSGT00940000164049.b.a ENSGT00940000163258.i.b ENSGT00940000163845.c ENSGT00940000164049.b.b ENSGT00940000158579.l.b.b.a.c ENSGT00940000158579.l.b.a ENSGT00940000163258.i.a.b ENSGT00940000158579.l.b.b.b Homo/Pan/Gorilla group ANCESTRAL SPECIES 27 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b.s ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709.e.a ENSGT00390000018577 ENSGT00390000015709.f ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j.b #22 ENSGT00940000158193 #23 ENSGT00940000163258.i.a.a ENSGT00940000163527.c.a ENSGT00940000163527.d ENSGT00960000187213 ENSGT00940000165026.b ENSGT00940000164049.b.a ENSGT00940000163258.i.b ENSGT00940000158579.l.b.a ENSGT00940000163845.d ENSGT00940000164049.b.b ENSGT00940000158579.l.b.b.a.c ENSGT00940000163845.c ENSGT00940000163258.i.a.b ENSGT00940000158579.l.b.b.b Homo/Pan group ANCESTRAL SPECIES 26 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b.s ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709.e.a ENSGT00390000018577 ENSGT00390000015709.f ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j.b #22 ENSGT00940000158193 #23 ENSGT00940000163258.i.a.a ENSGT00940000163527.c.a ENSGT00940000163527.d ENSGT00960000187213 ENSGT00940000165026.b ENSGT00940000163845.d ENSGT00940000158579.l.b.a ENSGT00940000164049.b.a ENSGT00940000163258.i.b ENSGT00940000163845.c ENSGT00940000164049.b.b ENSGT00940000158579.l.b.b.a.c ENSGT00940000158579.l.a ENSGT00510000047718 #24 Human MODERN SPECIES 13 YBEY (ENSG00000182362) MCM3AP (ENSG00000160294) LSS (ENSG00000160285) SPATC1L (ENSG00000160284) FTCD (ENSG00000160282) COL6A2 (ENSG00000142173) COL6A1 (ENSG00000142156) PCBP3 (ENSG00000183570) SLC19A1 (ENSG00000173638) COL18A1 (ENSG00000182871) POFUT2 (ENSG00000186866) ADARB1 (ENSG00000197381) SLX9 (ENSG00000160256) ITGB2 (ENSG00000160255) PTTG1IP (ENSG00000183255) #21 SUMO3 (ENSG00000184900) #22 UBE2G2 (ENSG00000184787) #23 KRTAP10-12 (ENSG00000189169) KRTAP12-1 (ENSG00000187175) KRTAP12-2 (ENSG00000221864) KRTAP12-3 (ENSG00000205439) KRTAP12-4 (ENSG00000212933) KRTAP10-11 (ENSG00000243489) KRTAP10-10 (ENSG00000221859) KRTAP10-9 (ENSG00000221837) KRTAP10-8 (ENSG00000187766) KRTAP10-7 (ENSG00000272804) KRTAP10-6 (ENSG00000188155) KRTAP10-5 (ENSG00000241123) KRTAP10-4 (ENSG00000215454) KRTAP10-3 (ENSG00000212935) Pan ANCESTRAL SPECIES ENSGT00950000182895.a.b.j.b #22 Chimpanzee MODERN SPECIES OR2L5 (ENSPTRG00000046010) OR2L2 (ENSPTRG00000045276) OR2L3 (ENSPTRG00000050733) ENSPTRG00000030067 OR2L13 (ENSPTRG00000002215) ENSPTRG00000049161 OR2M5 (ENSPTRG00000046995) OR2M3 (ENSPTRG00000047719) OR2M4 (ENSPTRG00000002217) OR2M7 (ENSPTRG00000042776) OR14C36 (ENSPTRG00000002220) ENSPTRG00000049402 OR2T4 (ENSPTRG00000030061) OR2T6 (ENSPTRG00000030060) OR2G6 (ENSPTRG00000022806) ENSPTRG00000049162 #22 ENSPTRG00000023676 ENSPTRG00000029601 OR2T11 (ENSPTRG00000002223) OR14I1 (ENSPTRG00000023522) ENSPTRG00000048448 LYPD8 (ENSPTRG00000047488) SH3BP5L (ENSPTRG00000002224) ZNF672 (ENSPTRG00000002225) ZNF692 (ENSPTRG00000002226) PGBD2 (ENSPTRG00000002227) Bonobo MODERN SPECIES OR2L5 (ENSPPAG00000015628) OR2L2 (ENSPPAG00000034170) ENSPPAG00000007166 OR2L13 (ENSPPAG00000000427) ENSPPAG00000005253 OR2M3 (ENSPPAG00000017240) OR2M4 (ENSPPAG00000022132) OR2T12 (ENSPPAG00000030447) OR2M7 (ENSPPAG00000003964) ENSPPAG00000015154 OR2T4 (ENSPPAG00000009000) OR2T6 (ENSPPAG00000034554) OR2T1 (ENSPPAG00000008680) OR2T11 (ENSPPAG00000001140) ENSPPAG00000034158 ENSPPAG00000003421 #22 ENSPPAG00000035880 Platyrrhini ANCESTRAL SPECIES 31 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b.s ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000158579.l.b.b.a.a.b ENSGT00940000158579.l.b.a ENSGT00940000163845.d ENSGT00510000047718 #24 ENSGT00940000158579.l.b.b.a.b ENSGT00940000163845.c ENSGT00940000163258.i.b ENSGT00940000158579.l.a ENSGT00940000158579.k ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 Cebidae ANCESTRAL SPECIES 32 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b.s ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000158579.l.b.b.a.a.b ENSGT00940000158579.l.b.a ENSGT00510000047718 #24 ENSGT00940000158579.l.b.b.a.b ENSGT00940000163845.c ENSGT00940000163258.i.b ENSGT00940000158579.l.a ENSGT00940000158579.k ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 Marmoset MODERN SPECIES 13 LSS (ENSCJAG00000086602) SPATC1L (ENSCJAG00000085076) FTCD (ENSCJAG00000080609) COL6A2 (ENSCJAG00000001863) COL6A1 (ENSCJAG00000078346) PCBP3 (ENSCJAG00000077507) SLC19A1 (ENSCJAG00000001943) ENSCJAG00000081985 COL18A1 (ENSCJAG00000083421) ENSCJAG00000081850 ADARB1 (ENSCJAG00000018646) ENSCJAG00000071675 SLX9 (ENSCJAG00000010599) ITGB2 (ENSCJAG00000010554) PTTG1IP (ENSCJAG00000085899) #21 SUMO3 (ENSCJAG00000010529) #22 UBE2G2 (ENSCJAG00000041224) #23 ENSCJAG00000063198 ENSCJAG00000000301 ENSCJAG00000000296 ENSCJAG00000052337 ENSCJAG00000047635 ENSCJAG00000041374 KRTAP10-3 (ENSCJAG00000077838) ENSCJAG00000046358 TSPEAR (ENSCJAG00000015329) #24 LRRC3 (ENSCJAG00000081918) TRPM2 (ENSCJAG00000073600) #25 CFAP410 (ENSCJAG00000017611) PFKL (ENSCJAG00000017630) AIRE (ENSCJAG00000013748) Cebidae_a ANCESTRAL SPECIES ENSGT00950000182895.a.b.j #22 Bolivian squirrel monkey MODERN SPECIES 57 SLC38A9 (ENSSBOG00000026976) PLPP1 (ENSSBOG00000021185) MTREX (ENSSBOG00000026693) DHX29 (ENSSBOG00000026450) CCNO (ENSSBOG00000024858) MCIDAS (ENSSBOG00000027678) CDC20B (ENSSBOG00000021532) GPX8 (ENSSBOG00000033612) GZMA (ENSSBOG00000031268) ENSSBOG00000032720 GZMK (ENSSBOG00000023762) ESM1 (ENSSBOG00000026605) SNX18 (ENSSBOG00000021385) HSPB3 (ENSSBOG00000019511) ARL15 (ENSSBOG00000031209) ENSSBOG00000035211 #22 ENSSBOG00000035792 NDUFS4 (ENSSBOG00000014595) ENSSBOG00000020828 FST (ENSSBOG00000024064) ENSSBOG00000012144 MOCS2 (ENSSBOG00000023924) ITGA2 (ENSSBOG00000026323) ITGA1 (ENSSBOG00000035784) ENSSBOG00000005354 PELO (ENSSBOG00000036140) ISL1 (ENSSBOG00000029572) PARP8 (ENSSBOG00000026196) ENSSBOG00000022889 EMB (ENSSBOG00000031770) HCN1 (ENSSBOG00000032652) Mas night monkey DUPLICATION Mas night monkey MODERN SPECIES 1115 AKT3 (ENSANAG00000031454) ZBTB18 (ENSANAG00000037877) C1orf100 (ENSANAG00000029438) ENSANAG00000033603 CATSPERE (ENSANAG00000038006) DESI2 (ENSANAG00000036524) ENSANAG00000028263 ENSANAG00000029422 ENSANAG00000033895 EFCAB2 (ENSANAG00000033282) KIF26B (ENSANAG00000030464) SMYD3 (ENSANAG00000032109) ENSANAG00000037652 TFB2M (ENSANAG00000038040) CNST (ENSANAG00000022435) ENSANAG00000035995 #22 SCCPDH (ENSANAG00000017200) AHCTF1 (ENSANAG00000027717) Mas night monkey MODERN SPECIES 1376 ENSANAG00000034097 COL18A1 (ENSANAG00000036428) POFUT2 (ENSANAG00000022544) ADARB1 (ENSANAG00000023685) SLX9 (ENSANAG00000031930) ITGB2 (ENSANAG00000032805) PTTG1IP (ENSANAG00000031724) #21 ENSANAG00000032700 #22 UBE2G2 (ENSANAG00000035084) #23 ENSANAG00000030182 ENSANAG00000030273 KRTAP12-3 (ENSANAG00000026810) ENSANAG00000027010 ENSANAG00000027667 ENSANAG00000028487 ENSANAG00000032475 TSPEAR (ENSANAG00000032724) #24 TRPM2 (ENSANAG00000034661) #25 CFAP410 (ENSANAG00000021390) PFKL (ENSANAG00000022126) AIRE (ENSANAG00000031045) DNMT3L (ENSANAG00000027897) ENSANAG00000031721 Strepsirrhini ANCESTRAL SPECIES 1 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b.s ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000163845 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000163441.f.a.a.a ENSGT00940000163258 ENSGT00940000158579 ENSGT00940000163527 ENSGT00940000164049 ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 Bushbaby MODERN SPECIES 243 FTCD (ENSOGAG00000008226) COL6A2 (ENSOGAG00000005077) COL6A1 (ENSOGAG00000031247) ENSOGAG00000024419 ENSOGAG00000008044 SLC19A1 (ENSOGAG00000032361) COL18A1 (ENSOGAG00000000892) ENSOGAG00000024946 POFUT2 (ENSOGAG00000017168) ADARB1 (ENSOGAG00000017167) ENSOGAG00000026126 ENSOGAG00000027833 SLX9 (ENSOGAG00000009641) ITGB2 (ENSOGAG00000009633) PTTG1IP (ENSOGAG00000005597) #21 SUMO3 (ENSOGAG00000004715) #22 ENSOGAG00000012063 #23 ENSOGAG00000033488 ENSOGAG00000034456 TSPEAR (ENSOGAG00000003682) #24 LRRC3 (ENSOGAG00000013776) TRPM2 (ENSOGAG00000014398) #25 CFAP410 (ENSOGAG00000003170) PFKL (ENSOGAG00000027753) AIRE (ENSOGAG00000010769) DNMT3L (ENSOGAG00000015368) ICOSLG (ENSOGAG00000015366) GATD3 (ENSOGAG00000012480) PWP2 (ENSOGAG00000012473) TRAPPC10 (ENSOGAG00000012463) AGPAT3 (ENSOGAG00000003775) Lemuriformes ANCESTRAL SPECIES 88 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b.s ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 Mouse lemur DUPLICATION Mouse lemur MODERN SPECIES 24 YBEY (ENSMICG00000000809) MCM3AP (ENSMICG00000000801) LSS (ENSMICG00000004051) SPATC1L (ENSMICG00000027207) FTCD (ENSMICG00000002458) COL6A2 (ENSMICG00000033173) ENSMICG00000033569 PCBP3 (ENSMICG00000012679) SLC19A1 (ENSMICG00000035898) COL18A1 (ENSMICG00000037125) POFUT2 (ENSMICG00000035479) ADARB1 (ENSMICG00000008433) SLX9 (ENSMICG00000047718) ITGB2 (ENSMICG00000002984) PTTG1IP (ENSMICG00000028388) #21 SUMO3 (ENSMICG00000036688) #22 UBE2G2 (ENSMICG00000013001) #23 TFF2 (ENSMICG00000011183) TFF1 (ENSMICG00000045652) TMPRSS3 (ENSMICG00000005497) UBASH3A (ENSMICG00000000050) RSPH1 (ENSMICG00000000051) SLC37A1 (ENSMICG00000000053) PDE9A (ENSMICG00000016258) WDR4 (ENSMICG00000042106) NDUFV3 (ENSMICG00000046617) PKNOX1 (ENSMICG00000037878) CBS (ENSMICG00000041663) U2AF1 (ENSMICG00000013835) CRYAA (ENSMICG00000035380) ENSMICG00000035845 Mouse lemur MODERN SPECIES 30 TSN (ENSMICG00000015793) NIFK (ENSMICG00000037600) CLASP1 (ENSMICG00000007186) TFCP2L1 (ENSMICG00000007161) ENSMICG00000032165 ENSMICG00000033908 GLI2 (ENSMICG00000008885) INHBB (ENSMICG00000047510) RALB (ENSMICG00000012197) ENSMICG00000042089 ENSMICG00000009529 EPB41L5 (ENSMICG00000000936) PTPN4 (ENSMICG00000046058) ENSMICG00000017224 ENSMICG00000034038 ENSMICG00000011011 #22 CFAP221 (ENSMICG00000017212) SCTR (ENSMICG00000000297) TMEM37 (ENSMICG00000000295) DBI (ENSMICG00000026878) C2orf76 (ENSMICG00000037028) ENSMICG00000000288 ENSMICG00000033839 ENSMICG00000017595 EN1 (ENSMICG00000042501) INSIG2 (ENSMICG00000046615) CCDC93 (ENSMICG00000017592) ENSMICG00000017591 ENSMICG00000047072 ENSMICG00000039700 DPP10 (ENSMICG00000032720) Lemuriformes_a ANCESTRAL SPECIES 181 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b.s ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 Coquerels sifaka DUPLICATION Coquerels sifaka MODERN SPECIES 768 ENSPCOG00000021907 ENSPCOG00000018632 #22 C9orf153 (ENSPCOG00000020594) ISCA1 (ENSPCOG00000021277) TUT7 (ENSPCOG00000023407) GAS1 (ENSPCOG00000025804) DAPK1 (ENSPCOG00000015755) ENSPCOG00000017521 FBP2 (ENSPCOG00000006489) CTSL (ENSPCOG00000020524) Coquerels sifaka MODERN SPECIES 134 NANS (ENSPCOG00000023626) TRIM14 (ENSPCOG00000017721) CORO2A (ENSPCOG00000021539) TBC1D2 (ENSPCOG00000024947) GABBR2 (ENSPCOG00000019740) ANKS6 (ENSPCOG00000019218) GALNT12 (ENSPCOG00000022046) COL15A1 (ENSPCOG00000007449) TGFBR1 (ENSPCOG00000021241) ALG2 (ENSPCOG00000014203) SEC61B (ENSPCOG00000021383) NR4A3 (ENSPCOG00000012688) STX17 (ENSPCOG00000019872) ERP44 (ENSPCOG00000027107) INVS (ENSPCOG00000024587) ENSPCOG00000022135 #22 TEX10 (ENSPCOG00000026793) MSANTD3 (ENSPCOG00000028663) TMEFF1 (ENSPCOG00000014294) CAVIN4 (ENSPCOG00000012594) ENSPCOG00000012244 ENSPCOG00000028150 PLPPR1 (ENSPCOG00000005256) BAAT (ENSPCOG00000015820) ZNF189 (ENSPCOG00000016670) ALDOB (ENSPCOG00000026694) PGAP4 (ENSPCOG00000014025) RNF20 (ENSPCOG00000026072) GRIN3A (ENSPCOG00000008500) Coquerels sifaka MODERN SPECIES 543 YBEY (ENSPCOG00000015606) MCM3AP (ENSPCOG00000024498) LSS (ENSPCOG00000019936) SPATC1L (ENSPCOG00000025023) FTCD (ENSPCOG00000021020) COL6A2 (ENSPCOG00000016356) COL6A1 (ENSPCOG00000014806) PCBP3 (ENSPCOG00000013797) SLC19A1 (ENSPCOG00000027927) COL18A1 (ENSPCOG00000014698) POFUT2 (ENSPCOG00000016074) ADARB1 (ENSPCOG00000020406) SLX9 (ENSPCOG00000020078) ITGB2 (ENSPCOG00000014923) PTTG1IP (ENSPCOG00000020581) #21 ENSPCOG00000019098 #22 UBE2G2 (ENSPCOG00000026083) #23 ENSPCOG00000013309 Greater bamboo lemur DUPLICATION Greater bamboo lemur MODERN SPECIES 1314 ENSPSMG00000004175 #21 ENSPSMG00000004149 #22 UBE2G2 (ENSPSMG00000004073) #23 ENSPSMG00000004065 Greater bamboo lemur MODERN SPECIES 1310 ENSPSMG00000003996 #22 Euarchontoglires_A ANCESTRAL SPECIES 2 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000155183 ENSGT00940000163258 ENSGT00940000163845 ENSGT00940000158579 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 Tree shrew MODERN SPECIES 6630 ENSTBEG00000007131 #22 Glires ANCESTRAL SPECIES 2 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000155183 ENSGT00940000163845 ENSGT00940000158579 ENSGT00940000163441.f.a.a.a ENSGT00940000163258 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a Rodentia ANCESTRAL SPECIES 2 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000155183 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b Rodentia_A ANCESTRAL SPECIES 5 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000155183 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b Sciuridae ANCESTRAL SPECIES 12 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989.h ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b ENSGT00940000154826 Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 14 IDO2 (ENSSVLG00005021403) IDO1 (ENSSVLG00005021549) ADAM18 (ENSSVLG00005021659) ENSSVLG00005021965 ENSSVLG00005022023 ADAM32 (ENSSVLG00005022276) ENSSVLG00005022608 ADAM9 (ENSSVLG00005010866) TM2D2 (ENSSVLG00005011108) HTRA4 (ENSSVLG00005011148) PLEKHA2 (ENSSVLG00005011303) TACC1 (ENSSVLG00005011491) FGFR1 (ENSSVLG00005011874) LETM2 (ENSSVLG00005012521) NSD3 (ENSSVLG00005013101) ENSSVLG00005013154 #22 PLPP5 (ENSSVLG00005013468) DDHD2 (ENSSVLG00005013607) BAG4 (ENSSVLG00005013686) LSM1 (ENSSVLG00005013791) STAR (ENSSVLG00005013903) ASH2L (ENSSVLG00005014040) EIF4EBP1 (ENSSVLG00005014183) ENSSVLG00005014228 ADRB3 (ENSSVLG00005014273) GOT1L1 (ENSSVLG00005014325) ENSSVLG00005014501 BRF2 (ENSSVLG00005014567) ADGRA2 (ENSSVLG00005014696) ENSSVLG00005014866 ENSSVLG00005014990 Eurasian red squirrel MODERN SPECIES 1 YBEY (ENSSVLG00005018192) MCM3AP (ENSSVLG00005018327) LSS (ENSSVLG00005018385) SPATC1L (ENSSVLG00005019009) ENSSVLG00005019107 ENSSVLG00005019331 COL6A2 (ENSSVLG00005019580) COL6A1 (ENSSVLG00005019712) PCBP3 (ENSSVLG00005019852) SLC19A1 (ENSSVLG00005020132) POFUT2 (ENSSVLG00005021705) ADARB1 (ENSSVLG00005021761) SLX9 (ENSSVLG00005021933) ITGB2 (ENSSVLG00005022020) ENSSVLG00005022355 #21 ENSSVLG00005022452 #22 UBE2G2 (ENSSVLG00005022482) #23 TSPEAR (ENSSVLG00005022529) #24 ENSSVLG00005022624 ENSSVLG00005022707 ENSSVLG00005023080 ENSSVLG00005023369 LRRC3 (ENSSVLG00005023556) TRPM2 (ENSSVLG00005023598) #25 CFAP410 (ENSSVLG00005023882) PFKL (ENSSVLG00005023925) AIRE (ENSSVLG00005023997) ENSSVLG00005024326 ICOSLG (ENSSVLG00005024369) GATD3 (ENSSVLG00005024474) PWP2 (ENSSVLG00005024557) Marmotini DUPLICATION Marmotini DUPLICATION Marmotini ANCESTRAL SPECIES 36 ENSGT00390000007870 ENSGT00940000165228 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b.j.n.a #22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Marmotini_b ANCESTRAL SPECIES 182 ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000163601 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989.h ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j.n.a #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 Squirrel DUPLICATION Squirrel MODERN SPECIES 378 YBEY (ENSSTOG00000029373) MCM3AP (ENSSTOG00000007531) LSS (ENSSTOG00000007503) SPATC1L (ENSSTOG00000026388) FTCD (ENSSTOG00000020132) COL6A2 (ENSSTOG00000024366) ENSSTOG00000022346 PCBP3 (ENSSTOG00000007178) SLC19A1 (ENSSTOG00000007113) ENSSTOG00000027467 POFUT2 (ENSSTOG00000028617) ADARB1 (ENSSTOG00000015792) SLX9 (ENSSTOG00000028031) ITGB2 (ENSSTOG00000001412) PTTG1IP (ENSSTOG00000021779) #21 ENSSTOG00000010587 #22 UBE2G2 (ENSSTOG00000007968) #23 TSPEAR (ENSSTOG00000022950) #24 ENSSTOG00000029592 ENSSTOG00000031377 ENSSTOG00000032824 ENSSTOG00000020703 ENSSTOG00000020813 ENSSTOG00000030499 ENSSTOG00000034349 ENSSTOG00000009410 Squirrel MODERN SPECIES 194 ENSSTOG00000033976 SMIM5 (ENSSTOG00000022610) RECQL5 (ENSSTOG00000012970) ENSSTOG00000030239 ENSSTOG00000021155 LLGL2 (ENSSTOG00000012891) TSEN54 (ENSSTOG00000012883) CASKIN2 (ENSSTOG00000021787) TMEM94 (ENSSTOG00000012842) GRB2 (ENSSTOG00000012661) ENSSTOG00000015212 MIF4GD (ENSSTOG00000022390) MRPS7 (ENSSTOG00000015200) GGA3 (ENSSTOG00000015187) NUP85 (ENSSTOG00000015175) ENSSTOG00000024685 #22 JPT1 (ENSSTOG00000015171) NT5C (ENSSTOG00000015167) ARMC7 (ENSSTOG00000015164) SLC16A5 (ENSSTOG00000015159) ENSSTOG00000019549 ATP5PD (ENSSTOG00000015154) MRPL58 (ENSSTOG00000015149) CDR2L (ENSSTOG00000023575) KCTD2 (ENSSTOG00000015158) HID1 (ENSSTOG00000015130) OTOP3 (ENSSTOG00000021608) OTOP2 (ENSSTOG00000025566) USH1G (ENSSTOG00000021597) FADS6 (ENSSTOG00000009655) FDXR (ENSSTOG00000009639) Marmotini ANCESTRAL SPECIES 21 ENSGT00410000025698.a ENSGT00390000011270 ENSGT00390000001960 ENSGT00940000157390 ENSGT00940000159171 ENSGT00940000159967 ENSGT00550000074815 ENSGT00940000157359 ENSGT00550000074910 ENSGT00390000005794 ENSGT00940000157560.e ENSGT00390000004585 ENSGT00940000159665 ENSGT00940000162410 ENSGT00950000183093.C ENSGT00950000182895.a.b.j.n.b #22 ENSGT00940000157671 ENSGT00520000058292 ENSGT00940000161139 ENSGT00390000011405 ENSGT00950000182767.a.a ENSGT00390000016465 ENSGT00390000006681.c ENSGT00940000157407 ENSGT00940000162464 ENSGT00940000160410 ENSGT00740000115684 ENSGT00940000160090 ENSGT00940000170327 ENSGT00940000154784.D.a.b ENSGT00940000153463.b Marmotini_b ANCESTRAL SPECIES 160 ENSGT00410000025698.a ENSGT00390000011270 ENSGT00390000001960 ENSGT00940000157390 ENSGT00940000159171 ENSGT00940000159967 ENSGT00550000074815 ENSGT00940000157359 ENSGT00550000074910 ENSGT00390000005794 ENSGT00940000157560.e ENSGT00390000004585 ENSGT00940000159665 ENSGT00940000162410 ENSGT00950000183093.C ENSGT00950000182895.a.b.j.n.b #22 ENSGT00940000157671 ENSGT00520000058292 ENSGT00940000161139 ENSGT00390000011405 Arctic ground squirrel MODERN SPECIES 54 GPATCH2 (ENSUPAG00010009619) SPATA17 (ENSUPAG00010009658) RRP15 (ENSUPAG00010009681) TGFB2 (ENSUPAG00010009688) LYPLAL1 (ENSUPAG00010009729) SLC30A10 (ENSUPAG00010009741) EPRS1 (ENSUPAG00010009749) BPNT1 (ENSUPAG00010009777) IARS2 (ENSUPAG00010009798) RAB3GAP2 (ENSUPAG00010009831) MARK1 (ENSUPAG00010009891) C1orf115 (ENSUPAG00010009923) MTARC2 (ENSUPAG00010009928) MTARC1 (ENSUPAG00010009939) HLX (ENSUPAG00010009960) ENSUPAG00010009975 #22 DUSP10 (ENSUPAG00010009979) ENSUPAG00010009984 HHIPL2 (ENSUPAG00010009987) ENSUPAG00010010009 Squirrel MODERN SPECIES 250 ENSSTOG00000030930 DNAH6 (ENSSTOG00000028220) SUCLG1 (ENSSTOG00000016550) LYPLAL1 (ENSSTOG00000025167) SLC30A10 (ENSSTOG00000003770) EPRS1 (ENSSTOG00000011870) BPNT1 (ENSSTOG00000005861) IARS2 (ENSSTOG00000005879) RAB3GAP2 (ENSSTOG00000020278) ENSSTOG00000004797 MARK1 (ENSSTOG00000004930) C1orf115 (ENSSTOG00000029139) MTARC2 (ENSSTOG00000006676) MTARC1 (ENSSTOG00000006692) HLX (ENSSTOG00000006326) ENSSTOG00000030827 #22 DUSP10 (ENSSTOG00000011662) HHIPL2 (ENSSTOG00000007102) Alpin marmot MODERN SPECIES 12 TGFB2 (ENSMMMG00000024197) LYPLAL1 (ENSMMMG00000024196) SLC30A10 (ENSMMMG00000024195) EPRS1 (ENSMMMG00000024193) BPNT1 (ENSMMMG00000024192) ENSMMMG00000024191 IARS2 (ENSMMMG00000024190) RAB3GAP2 (ENSMMMG00000024188) ENSMMMG00000024187 MARK1 (ENSMMMG00000024186) C1orf115 (ENSMMMG00000024185) MTARC2 (ENSMMMG00000024184) MTARC1 (ENSMMMG00000024183) HLX (ENSMMMG00000024182) ENSMMMG00000024180 ENSMMMG00000024179 #22 DUSP10 (ENSMMMG00000024177) ENSMMMG00000024176 TAF1A (ENSMMMG00000024175) MIA3 (ENSMMMG00000024174) ENSMMMG00000024173 ENSMMMG00000024172 ENSMMMG00000024171 ENSMMMG00000024170 DISP1 (ENSMMMG00000024169) TLR5 (ENSMMMG00000024168) SUSD4 (ENSMMMG00000024167) CCDC185 (ENSMMMG00000024166) CAPN8 (ENSMMMG00000024165) ENSMMMG00000024163 CAPN2 (ENSMMMG00000024162) Marmotini ANCESTRAL SPECIES 13 ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000163601 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989.h ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j.o #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b ENSGT00940000154826.lb Alpin marmot DUPLICATION Alpin marmot MODERN SPECIES 90 SAP30BP (ENSMMMG00000010396) RECQL5 (ENSMMMG00000010416) ENSMMMG00000010454 SMIM5 (ENSMMMG00000010460) ENSMMMG00000010467 LLGL2 (ENSMMMG00000010530) ENSMMMG00000010600 CASKIN2 (ENSMMMG00000010618) TMEM94 (ENSMMMG00000010651) GRB2 (ENSMMMG00000010717) SLC25A19 (ENSMMMG00000010758) MIF4GD (ENSMMMG00000010800) MRPS7 (ENSMMMG00000010811) GGA3 (ENSMMMG00000010824) NUP85 (ENSMMMG00000010923) ENSMMMG00000010977 #22 JPT1 (ENSMMMG00000011009) NT5C (ENSMMMG00000011020) ARMC7 (ENSMMMG00000011039) SLC16A5 (ENSMMMG00000011051) ENSMMMG00000011073 ENSMMMG00000011080 ATP5PD (ENSMMMG00000011085) MRPL58 (ENSMMMG00000011103) CDR2L (ENSMMMG00000011134) HID1 (ENSMMMG00000011148) OTOP3 (ENSMMMG00000011211) OTOP2 (ENSMMMG00000011228) USH1G (ENSMMMG00000011236) FADS6 (ENSMMMG00000011248) FDXR (ENSMMMG00000011264) Alpin marmot MODERN SPECIES 4 MCM3AP (ENSMMMG00000013170) LSS (ENSMMMG00000013141) SPATC1L (ENSMMMG00000013131) FTCD (ENSMMMG00000013068) ENSMMMG00000013067 COL6A2 (ENSMMMG00000013048) ENSMMMG00000013027 PCBP3 (ENSMMMG00000012976) SLC19A1 (ENSMMMG00000012919) ENSMMMG00000012904 POFUT2 (ENSMMMG00000012809) ADARB1 (ENSMMMG00000012767) SLX9 (ENSMMMG00000012725) ITGB2 (ENSMMMG00000012709) ENSMMMG00000012708 #21 SUMO3 (ENSMMMG00000012686) #22 ENSMMMG00000012676 UBE2G2 (ENSMMMG00000012664) #23 ENSMMMG00000012657 ENSMMMG00000012650 ENSMMMG00000012640 TSPEAR (ENSMMMG00000012623) #24 LRRC3 (ENSMMMG00000012614) TRPM2 (ENSMMMG00000012573) #25 CFAP410 (ENSMMMG00000012554) ENSMMMG00000012488 AIRE (ENSMMMG00000012367) ENSMMMG00000012363 ICOSLG (ENSMMMG00000012361) GATD3 (ENSMMMG00000012356) PWP2 (ENSMMMG00000011468) Marmotini_b ANCESTRAL SPECIES ENSGT00950000182895.a.b.j.o #22 Squirrel MODERN SPECIES 605 ENSSTOG00000008319 #22 Arctic ground squirrel DUPLICATION Arctic ground squirrel MODERN SPECIES 329 IPO4 (ENSUPAG00010009601) REC8 (ENSUPAG00010009635) ENSUPAG00010009650 RNF31 (ENSUPAG00010009656) PSME2 (ENSUPAG00010009682) EMC9 (ENSUPAG00010009721) PSME1 (ENSUPAG00010009735) FITM1 (ENSUPAG00010009801) DCAF11 (ENSUPAG00010009807) PCK2 (ENSUPAG00010009905) NRL (ENSUPAG00010009985) CPNE6 (ENSUPAG00010009996) CARMIL3 (ENSUPAG00010010070) ENSUPAG00010010123 DHRS2 (ENSUPAG00010010137) ENSUPAG00010010483 #22 ENSUPAG00010010485 JPH4 (ENSUPAG00010010533) AP1G2 (ENSUPAG00010010537) THTPA (ENSUPAG00010010569) ZFHX2 (ENSUPAG00010010574) NGDN (ENSUPAG00010010585) MYH6 (ENSUPAG00010010620) CMTM5 (ENSUPAG00010010806) IL25 (ENSUPAG00010010826) EFS (ENSUPAG00010010832) SLC22A17 (ENSUPAG00010010867) PABPN1 (ENSUPAG00010010902) BCL2L2 (ENSUPAG00010010908) PPP1R3E (ENSUPAG00010010914) HOMEZ (ENSUPAG00010010920) Arctic ground squirrel MODERN SPECIES 924 SUMO3 (ENSUPAG00010023954) #22 UBE2G2 (ENSUPAG00010023952) #23 ENSUPAG00010023949 ENSUPAG00010023947 Hystricomorpha ANCESTRAL SPECIES 60 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000155183 ENSGT00510000047718 #24 ENSGT00390000003874 ENSGT00940000154826 ENSGT00390000011821.b ENSGT00950000182836.b.b.b.a ENSGT00390000003873 ENSGT00550000074981 ENSGT00390000003706.a.a ENSGT00940000161590 ENSGT00940000162228 ENSGT00940000161104 ENSGT00940000159292 ENSGT00390000018807 Naked mole-rat female MODERN SPECIES 11 ENSHGLG00000012528 LSS (ENSHGLG00000008767) SPATC1L (ENSHGLG00000013076) FTCD (ENSHGLG00000048038) COL6A2 (ENSHGLG00000009116) COL6A1 (ENSHGLG00000017878) PCBP3 (ENSHGLG00000018620) SLC19A1 (ENSHGLG00000013143) ENSHGLG00000018308 POFUT2 (ENSHGLG00000041783) ADARB1 (ENSHGLG00000005906) SLX9 (ENSHGLG00000045493) ITGB2 (ENSHGLG00000013472) ENSHGLG00000049629 PTTG1IP (ENSHGLG00000033185) #21 ENSHGLG00000037860 #22 ENSHGLG00000009258 #23 ENSHGLG00000014199 #24 ENSHGLG00000005505 ENSHGLG00000043957 ENSHGLG00000038544 ENSHGLG00000007283 ENSHGLG00000015985 ENSHGLG00000046004 CSTB (ENSHGLG00000047009) RRP1 (ENSHGLG00000050109) AGPAT3 (ENSHGLG00000048529) TRAPPC10 (ENSHGLG00000013176) PWP2 (ENSHGLG00000017401) ENSHGLG00000018104 ENSHGLG00000013877 Hystricomorpha_a ANCESTRAL SPECIES 37 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000155183 ENSGT00510000047718 #24 ENSGT00390000003874 ENSGT00940000154826 ENSGT00390000011821.b ENSGT00950000182836.b.b.b.a ENSGT00390000003873 ENSGT00550000074981 ENSGT00390000003706.a.a ENSGT00940000161590 ENSGT00940000162228 ENSGT00940000161104 ENSGT00940000159292 ENSGT00390000018807 Guinea pig MODERN SPECIES 90 ADARB1 (ENSCPOG00000022969) SLX9 (ENSCPOG00000036519) ITGB2 (ENSCPOG00000025922) PTTG1IP (ENSCPOG00000023250) #21 SUMO3 (ENSCPOG00000025203) #22 UBE2G2 (ENSCPOG00000035970) #23 ENSCPOG00000037876 ENSCPOG00000032969 ENSCPOG00000038786 ENSCPOG00000034347 TSPEAR (ENSCPOG00000004362) #24 ENSCPOG00000036402 PDXK (ENSCPOG00000039719) CSTB (ENSCPOG00000031855) RRP1 (ENSCPOG00000038986) AGPAT3 (ENSCPOG00000032718) TRAPPC10 (ENSCPOG00000011117) PWP2 (ENSCPOG00000023616) GATD3 (ENSCPOG00000011419) DNMT3L (ENSCPOG00000004070) Hystricomorpha_b ANCESTRAL SPECIES ENSGT00950000182895.a.b.j #22 Degu MODERN SPECIES 165 ENSODEG00000003412 PRR16 (ENSODEG00000003401) ENSODEG00000003064 ENSODEG00000003051 FAM170A (ENSODEG00000003032) ENSODEG00000003016 HSD17B4 (ENSODEG00000002614) ENSODEG00000018825 ENSODEG00000002485 DMXL1 (ENSODEG00000002200) ENSODEG00000018764 DTWD2 (ENSODEG00000001974) ENSODEG00000018846 ENSODEG00000018768 #22 ENSODEG00000002744 SEMA6A (ENSODEG00000002653) ENSODEG00000002602 ENSODEG00000002580 ENSODEG00000002563 ARL14EPL (ENSODEG00000002532) LVRN (ENSODEG00000002192) ENSODEG00000002163 ATG12 (ENSODEG00000002126) CDO1 (ENSODEG00000002104) TMED7 (ENSODEG00000002066) ENSODEG00000018754 FEM1C (ENSODEG00000002045) CCDC112 (ENSODEG00000002154) PGGT1B (ENSODEG00000002053) Rodentia_B ANCESTRAL SPECIES 2 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000161526.b ENSGT00940000155183 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a Kangaroo rat MODERN SPECIES 478 Ybey (ENSDORG00000024242) Mcm3ap (ENSDORG00000004416) Lss (ENSDORG00000010415) Spatc1l (ENSDORG00000010414) Ftcd (ENSDORG00000004547) Col6a2 (ENSDORG00000028732) ENSDORG00000004103 Pcbp3 (ENSDORG00000003640) Slc19a1 (ENSDORG00000008087) ENSDORG00000011477 Pofut2 (ENSDORG00000009350) Adarb1 (ENSDORG00000000619) Fam207a (ENSDORG00000028131) ENSDORG00000012531 Pttg1ip (ENSDORG00000028984) #21 Sumo3 (ENSDORG00000025904) #22 Ube2g2 (ENSDORG00000025137) #23 ENSDORG00000014492 ENSDORG00000019765 ENSDORG00000026443 ENSDORG00000024465 ENSDORG00000029443 ENSDORG00000028505 ENSDORG00000019773 Myomorpha ANCESTRAL SPECIES 14 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a.c ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000161526.b ENSGT00940000155183 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a Lesser Egyptian jerboa MODERN SPECIES 170 2610028H24Rik (ENSJJAG00000013433) Mcm3ap (ENSJJAG00000011921) Lss (ENSJJAG00000008335) Spatc1l (ENSJJAG00000003377) Ftcd (ENSJJAG00000000888) Col6a2 (ENSJJAG00000023030) Col6a1 (ENSJJAG00000021936) Pcbp3 (ENSJJAG00000021192) Slc19a1 (ENSJJAG00000020575) Col18a1 (ENSJJAG00000018606) Pofut2 (ENSJJAG00000017712) Adarb1 (ENSJJAG00000016847) ENSJJAG00000016167 Itgb2 (ENSJJAG00000015668) Pttg1ip (ENSJJAG00000011874) #21 Sumo3 (ENSJJAG00000011166) #22 Ube2g2 (ENSJJAG00000010215) #23 ENSJJAG00000009838 ENSJJAG00000009512 ENSJJAG00000007731 Tspear (ENSJJAG00000004036) #24 Lrrc3 (ENSJJAG00000001845) Trpm2 (ENSJJAG00000022864) #25 Cfap410 (ENSJJAG00000021716) Pfkl (ENSJJAG00000021078) Aire (ENSJJAG00000017059) ENSJJAG00000014700 ENSJJAG00000014399 Gatd3a (ENSJJAG00000013621) Pwp2 (ENSJJAG00000013039) Trappc10 (ENSJJAG00000011263) Muroidea ANCESTRAL SPECIES 11 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a.c ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000161526.b ENSGT00940000155183 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a Upper Galilee mountains blind mole rat MODERN SPECIES 1105 Ybey (ENSNGAG00000000949) Mcm3ap (ENSNGAG00000020806) Lss (ENSNGAG00000018100) Spatc1l (ENSNGAG00000016890) Ftcd (ENSNGAG00000015978) Col6a2 (ENSNGAG00000013702) Col6a1 (ENSNGAG00000010525) Pcbp3 (ENSNGAG00000005416) ENSNGAG00000003477 Col18a1 (ENSNGAG00000019514) Pofut2 (ENSNGAG00000016043) Adarb1 (ENSNGAG00000021602) Fam207a (ENSNGAG00000020787) Itgb2 (ENSNGAG00000015702) Pttg1ip (ENSNGAG00000014261) #21 Sumo3 (ENSNGAG00000009915) #22 Ube2g2 (ENSNGAG00000002914) #23 ENSNGAG00000022913 ENSNGAG00000022654 ENSNGAG00000018160 Muroidea_A ANCESTRAL SPECIES 8 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a.c ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000155183.f ENSGT00940000161526.b ENSGT00940000155183.e ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 Cricetidae ANCESTRAL SPECIES 9 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a.c ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000155183.f ENSGT00940000161526.b ENSGT00940000155183.e.a.b ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 Cricetinae ANCESTRAL SPECIES 24 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a.c ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000155183.e.a.a.b.a ENSGT00940000155183.e.a.b.a.a ENSGT00940000155183.f ENSGT00940000161526.b ENSGT00940000155183.e.a.b.a.b ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a Golden Hamster MODERN SPECIES 641 Mcm3ap (ENSMAUG00000008393) Lss (ENSMAUG00000005365) Spatc1l (ENSMAUG00000006869) Ftcd (ENSMAUG00000004152) Col6a2 (ENSMAUG00000022073) ENSMAUG00000020615 Pcbp3 (ENSMAUG00000007036) ENSMAUG00000012520 Slc19a1 (ENSMAUG00000007979) Col18a1 (ENSMAUG00000008076) Pofut2 (ENSMAUG00000006922) Adarb1 (ENSMAUG00000009334) Fam207a (ENSMAUG00000009365) ENSMAUG00000021821 Pttg1ip (ENSMAUG00000010900) #21 Sumo3 (ENSMAUG00000009748) #22 Ube2g2 (ENSMAUG00000022077) #23 ENSMAUG00000021040 ENSMAUG00000002462 ENSMAUG00000021981 ENSMAUG00000007884 ENSMAUG00000012939 Tspear (ENSMAUG00000011883) #24 Lrrc3 (ENSMAUG00000021907) Trpm2 (ENSMAUG00000005011) #25 Cfap410 (ENSMAUG00000018378) Pfkl (ENSMAUG00000017741) Aire (ENSMAUG00000021943) Dnmt3l (ENSMAUG00000019680) Icosl (ENSMAUG00000019140) Pwp2 (ENSMAUG00000020265) Chinese hamster chok1gshd DUPLICATION Chinese hamster chok1gshd MODERN SPECIES 215 Gsto2 (ENSCGRG00001019874) Itprip (ENSCGRG00001015730) Cfap58 (ENSCGRG00001018536) Sorcs3 (ENSCGRG00001013586) Sorcs1 (ENSCGRG00001015262) Xpnpep1 (ENSCGRG00001023199) Add3 (ENSCGRG00001016019) ENSCGRG00001013476 Smndc1 (ENSCGRG00001012973) Mxi1 (ENSCGRG00001009794) Dusp5 (ENSCGRG00001006024) Smc3 (ENSCGRG00001024369) Rbm20 (ENSCGRG00001023235) Pdcd4 (ENSCGRG00001007322) ENSCGRG00001004791 ENSCGRG00001001812 #22 Shoc2 (ENSCGRG00001000210) Adra2a (ENSCGRG00001015710) ENSCGRG00001014865 Gpam (ENSCGRG00001022396) Tectb (ENSCGRG00001021092) Gucy2g (ENSCGRG00001020462) ENSCGRG00001019520 Zdhhc6 (ENSCGRG00001017113) Vti1a (ENSCGRG00001020765) Tcf7l2 (ENSCGRG00001019358) Habp2 (ENSCGRG00001017201) Nrap (ENSCGRG00001000170) Casp7 (ENSCGRG00001019974) Plekhs1 (ENSCGRG00001018611) Dclre1a (ENSCGRG00001017843) Chinese hamster chok1gshd MODERN SPECIES 204 Ybey (ENSCGRG00001022036) Mcm3ap (ENSCGRG00001015274) Lss (ENSCGRG00001020282) Spatc1l (ENSCGRG00001017850) Ftcd (ENSCGRG00001011730) Col6a2 (ENSCGRG00001003342) Col6a1 (ENSCGRG00001017421) Pcbp3 (ENSCGRG00001006836) SLC19A1 (ENSCGRG00001016846) Col18a1 (ENSCGRG00001013369) Pofut2 (ENSCGRG00001022765) Adarb1 (ENSCGRG00001023922) Fam207a (ENSCGRG00001016236) Itgb2 (ENSCGRG00001016235) Pttg1ip (ENSCGRG00001000333) #21 Sumo3 (ENSCGRG00001014923) #22 Ube2g2 (ENSCGRG00001012138) #23 ENSCGRG00001011367 ENSCGRG00001023741 ENSCGRG00001013697 ENSCGRG00001016181 ENSCGRG00001012982 ENSCGRG00001018033 ENSCGRG00001011140 ENSCGRG00001007516 ENSCGRG00001006645 ENSCGRG00001000302 ENSCGRG00001000038 Gm36176 (ENSCGRG00001022992) ENSCGRG00001017382 ENSCGRG00001013139 Cricetidae_B ANCESTRAL SPECIES 12 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a.c ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b ENSGT00940000154826 Prairie vole DUPLICATION Prairie vole MODERN SPECIES 13 Or7d9 (ENSMOCG00000000337) ENSMOCG00000019115 ENSMOCG00000012110 ENSMOCG00000004665 Or1m1 (ENSMOCG00000006062) ENSMOCG00000006310 Zfp558 (ENSMOCG00000018648) Naalad2 (ENSMOCG00000004722) Chordc1 (ENSMOCG00000002318) ENSMOCG00000016118 Fat3 (ENSMOCG00000011364) Mtnr1b (ENSMOCG00000007650) Slc36a4 (ENSMOCG00000018384) Deup1 (ENSMOCG00000020791) Smco4 (ENSMOCG00000006274) ENSMOCG00000021789 #22 Cep295 (ENSMOCG00000021770) Taf1d (ENSMOCG00000014011) 4931406C07Rik (ENSMOCG00000012170) Med17 (ENSMOCG00000018802) Vstm5 (ENSMOCG00000012686) ENSMOCG00000015072 ENSMOCG00000021818 Alkbh8 (ENSMOCG00000019349) Cwf19l2 (ENSMOCG00000010389) Endod1 (ENSMOCG00000016035) Sesn3 (ENSMOCG00000013595) Fam76b (ENSMOCG00000001551) Cep57 (ENSMOCG00000005014) Mtmr2 (ENSMOCG00000009930) Maml2 (ENSMOCG00000021568) Prairie vole MODERN SPECIES 352 Ybey (ENSMOCG00000012634) Mcm3ap (ENSMOCG00000018380) Lss (ENSMOCG00000020263) Spatc1l (ENSMOCG00000012025) Ftcd (ENSMOCG00000013801) Col6a2 (ENSMOCG00000007120) Col6a1 (ENSMOCG00000015635) Pcbp3 (ENSMOCG00000016127) Slc19a1 (ENSMOCG00000008838) Col18a1 (ENSMOCG00000019606) Pofut2 (ENSMOCG00000013158) Adarb1 (ENSMOCG00000018324) Fam207a (ENSMOCG00000021449) Itgb2 (ENSMOCG00000022498) Pttg1ip (ENSMOCG00000020270) #21 ENSMOCG00000021821 #22 Ube2g2 (ENSMOCG00000001721) #23 Tspear (ENSMOCG00000013552) #24 ENSMOCG00000016087 ENSMOCG00000017107 ENSMOCG00000017419 ENSMOCG00000018107 ENSMOCG00000004341 ENSMOCG00000013216 ENSMOCG00000014262 ENSMOCG00000015079 ENSMOCG00000016139 Lrrc3 (ENSMOCG00000017485) Trpm2 (ENSMOCG00000019856) #25 Cfap410 (ENSMOCG00000020426) ENSMOCG00000013045 Prairie vole MODERN SPECIES 15 Itgb4 (ENSMOCG00000018829) Sap30bp (ENSMOCG00000011898) Recql5 (ENSMOCG00000019642) Myo15b (ENSMOCG00000013403) Llgl2 (ENSMOCG00000016380) Tsen54 (ENSMOCG00000021585) ENSMOCG00000015226 Tmem94 (ENSMOCG00000014527) ENSMOCG00000002602 Grb2 (ENSMOCG00000017537) ENSMOCG00000013006 Mif4gd (ENSMOCG00000010287) Mrps7 (ENSMOCG00000005519) Gga3 (ENSMOCG00000003209) Nup85 (ENSMOCG00000018333) ENSMOCG00000022080 #22 ENSMOCG00000012165 Nt5c (ENSMOCG00000019361) Armc7 (ENSMOCG00000013951) Slc16a5 (ENSMOCG00000010701) Trim80 (ENSMOCG00000021797) Kctd2 (ENSMOCG00000012062) Atp5h (ENSMOCG00000015015) Mrpl58 (ENSMOCG00000015630) Cdr2l (ENSMOCG00000019874) Hid1 (ENSMOCG00000012205) ENSMOCG00000011864 Ush1g (ENSMOCG00000017696) Otop2 (ENSMOCG00000012832) Fads6 (ENSMOCG00000012241) ENSMOCG00000010764 Murinae ANCESTRAL SPECIES 18 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a.c ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000155183.f ENSGT00940000161526.b ENSGT00940000155183.e ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 Rat MODERN SPECIES 16 Adck1 (ENSRNOG00000012685) Nrxn3 (ENSRNOG00000047574) dsr-2 (ENSRNOG00000066815) ENSRNOG00000062878 ENSRNOG00000063297 Dio2 (ENSRNOG00000062383) Cep128 (ENSRNOG00000003908) Tshr (ENSRNOG00000003972) Gtf2a1 (ENSRNOG00000004300) Ston2 (ENSRNOG00000004458) Sel1l (ENSRNOG00000004464) AABR07065217.2 (ENSRNOG00000042542) ENSRNOG00000030420 ENSRNOG00000066641 AABR07065265.1 (ENSRNOG00000021751) LOC103692684 (ENSRNOG00000070197) #22 ENSRNOG00000066374 Flrt2 (ENSRNOG00000003732) Galc (ENSRNOG00000003759) Gpr65 (ENSRNOG00000065590) Kcnk10 (ENSRNOG00000003813) Spata7 (ENSRNOG00000003955) Ptpn21 (ENSRNOG00000060568) Zc3h14 (ENSRNOG00000004083) Eml5 (ENSRNOG00000004207) Ttc8 (ENSRNOG00000004542) Cpg1 (ENSRNOG00000060278) Foxn3 (ENSRNOG00000004709) Efcab11 (ENSRNOG00000053317) Tdp1 (ENSRNOG00000003831) Kcnk13 (ENSRNOG00000047363) Mus ANCESTRAL SPECIES 15 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a.c ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000155183.e.d.a ENSGT00940000155183.f.a ENSGT00940000155183.e.c ENSGT00940000161526.b.r.b.b ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 Shrew mouse MODERN SPECIES 22 Mcm3ap (MGP_PahariEiJ_G0030883) Lss (MGP_PahariEiJ_G0030884) Spatc1l (MGP_PahariEiJ_G0030885) Ftcd (MGP_PahariEiJ_G0030886) Col6a2 (MGP_PahariEiJ_G0030887) Col6a1 (MGP_PahariEiJ_G0030888) Pcbp3 (MGP_PahariEiJ_G0030889) MGP_PahariEiJ_G0030890 Slc19a1 (MGP_PahariEiJ_G0030891) Col18a1 (MGP_PahariEiJ_G0030892) Pofut2 (MGP_PahariEiJ_G0030893) Adarb1 (MGP_PahariEiJ_G0030894) Fam207a (MGP_PahariEiJ_G0030895) Itgb2 (MGP_PahariEiJ_G0030896) Pttg1ip (MGP_PahariEiJ_G0030897) #21 Sumo3 (MGP_PahariEiJ_G0030898) #22 Ube2g2 (MGP_PahariEiJ_G0030899) #23 MGP_PahariEiJ_G0030900 Gm10272 (MGP_PahariEiJ_G0030901) MGP_PahariEiJ_G0030902 MGP_PahariEiJ_G0030903 Krtap12-1 (MGP_PahariEiJ_G0030904) MGP_PahariEiJ_G0030905 MGP_PahariEiJ_G0030906 MGP_PahariEiJ_G0030907 MGP_PahariEiJ_G0030908 Tspear (MGP_PahariEiJ_G0030909) #24 Lrrc3 (MGP_PahariEiJ_G0030910) MGP_PahariEiJ_G0030911 #25 Cfap410 (MGP_PahariEiJ_G0030912) Pfkl (MGP_PahariEiJ_G0030913) Mus_A ANCESTRAL SPECIES 11 ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00900000143399 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a.c ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000155183.e.c.b.b.a ENSGT00940000155183.e.c.b.a ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a Ryukyu mouse MODERN SPECIES 1 Lss (MGP_CAROLIEiJ_G0015470) Spatc1l (MGP_CAROLIEiJ_G0015471) Ftcd (MGP_CAROLIEiJ_G0015472) Col6a2 (MGP_CAROLIEiJ_G0015473) Col6a1 (MGP_CAROLIEiJ_G0015474) Pcbp3 (MGP_CAROLIEiJ_G0015475) MGP_CAROLIEiJ_G0015476 Slc19a1 (MGP_CAROLIEiJ_G0015477) Col18a1 (MGP_CAROLIEiJ_G0015478) MGP_CAROLIEiJ_G0015479 Pofut2 (MGP_CAROLIEiJ_G0015480) Adarb1 (MGP_CAROLIEiJ_G0015481) Fam207a (MGP_CAROLIEiJ_G0015482) Itgb2 (MGP_CAROLIEiJ_G0015483) Pttg1ip (MGP_CAROLIEiJ_G0015484) #21 Sumo3 (MGP_CAROLIEiJ_G0015485) #22 Ube2g2 (MGP_CAROLIEiJ_G0015486) #23 Gm10272 (MGP_CAROLIEiJ_G0015487) Gm10024 (MGP_CAROLIEiJ_G0015488) Gm10142 (MGP_CAROLIEiJ_G0015489) Krtap12-1 (MGP_CAROLIEiJ_G0015490) Gm10100 (MGP_CAROLIEiJ_G0015491) MGP_CAROLIEiJ_G0015492 Gm19668 (MGP_CAROLIEiJ_G0015493) MGP_CAROLIEiJ_G0015494 Krtap10-10 (MGP_CAROLIEiJ_G0015495) Tspear (MGP_CAROLIEiJ_G0015496) #24 Lrrc3 (MGP_CAROLIEiJ_G0015497) MGP_CAROLIEiJ_G0015498 #25 Cfap410 (MGP_CAROLIEiJ_G0015499) Pfkl (MGP_CAROLIEiJ_G0015500) Mus_B ANCESTRAL SPECIES 10 ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00900000143399 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a.c ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT01050000248522 ENSGT00390000011821.b Mouse MODERN SPECIES 1 Ybey (ENSMUSG00000033126) Mcm3ap (ENSMUSG00000001150) Lss (ENSMUSG00000033105) Spatc1l (ENSMUSG00000009115) Ftcd (ENSMUSG00000001155) Col6a2 (ENSMUSG00000020241) Col6a1 (ENSMUSG00000001119) Pcbp3 (ENSMUSG00000001120) Slc19a1 (ENSMUSG00000001436) Col18a1 (ENSMUSG00000001435) Pofut2 (ENSMUSG00000020260) Adarb1 (ENSMUSG00000020262) Fam207a (ENSMUSG00000032977) Itgb2 (ENSMUSG00000000290) Pttg1ip (ENSMUSG00000009291) #21 Sumo3 (ENSMUSG00000020265) #22 Ube2g2 (ENSMUSG00000009293) #23 Tspear (ENSMUSG00000069581) #24 Gm19402 (ENSMUSG00000095970) Gm9508 (ENSMUSG00000112170) Gm10272 (ENSMUSG00000069584) Gm10024 (ENSMUSG00000094012) Gm10142 (ENSMUSG00000094146) Krtap12-1 (ENSMUSG00000069583) Gm10100 (ENSMUSG00000096421) Gm18596 (ENSMUSG00000112864) Gm9736 (ENSMUSG00000112380) Gm3233 (ENSMUSG00000094120) Gm3238 (ENSMUSG00000095817) Gm7138 (ENSMUSG00000095593) Gm3250 (ENSMUSG00000096481) Mus_C ANCESTRAL SPECIES 7 ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00900000143399 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a.c ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000155183.f.b.a ENSGT00940000161526.b.r.a ENSGT00940000161526.b.r.b.a.b.b ENSGT00940000161526.b.r.b.a.a ENSGT00940000161526.b.r.b.a.b.a ENSGT00940000161526.b.r.b.b ENSGT00940000155183.e.c.b.b.b ENSGT00940000155183.f.a ENSGT00940000155183.e.d.a.b ENSGT00510000047718 #24 ENSGT00940000155183.e.c.b.a ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 spretus MODERN SPECIES 1 Lss (MGP_SPRETEiJ_G0016283) Spatc1l (MGP_SPRETEiJ_G0016284) Ftcd (MGP_SPRETEiJ_G0016285) Col6a2 (MGP_SPRETEiJ_G0016286) Col6a1 (MGP_SPRETEiJ_G0016287) Pcbp3 (MGP_SPRETEiJ_G0016288) MGP_SPRETEiJ_G0016289 Slc19a1 (MGP_SPRETEiJ_G0016290) Col18a1 (MGP_SPRETEiJ_G0016291) MGP_SPRETEiJ_G0016292 Pofut2 (MGP_SPRETEiJ_G0016293) Adarb1 (MGP_SPRETEiJ_G0016294) Fam207a (MGP_SPRETEiJ_G0016295) Itgb2 (MGP_SPRETEiJ_G0016296) Pttg1ip (MGP_SPRETEiJ_G0016297) #21 Sumo3 (MGP_SPRETEiJ_G0016298) #22 Ube2g2 (MGP_SPRETEiJ_G0016299) #23 MGP_SPRETEiJ_G0016300 Gm10272 (MGP_SPRETEiJ_G0016301) Gm10024 (MGP_SPRETEiJ_G0016302) Gm10142 (MGP_SPRETEiJ_G0016303) Krtap12-1 (MGP_SPRETEiJ_G0016304) Gm10100 (MGP_SPRETEiJ_G0016305) Gm19668 (MGP_SPRETEiJ_G0016306) MGP_SPRETEiJ_G0016307 Tspear (MGP_SPRETEiJ_G0016308) #24 MGP_SPRETEiJ_G0016309 Lrrc3 (MGP_SPRETEiJ_G0016310) Trpm2 (MGP_SPRETEiJ_G0016311) #25 Cfap410 (MGP_SPRETEiJ_G0016312) Pfkl (MGP_SPRETEiJ_G0016313) Steppe mouse DUPLICATION Steppe mouse MODERN SPECIES 3135 Recql5 (ENSMSIG00000028015) Smim6 (ENSMSIG00000028032) Smim5 (ENSMSIG00000028034) Myo15b (ENSMSIG00000028039) Llgl2 (ENSMSIG00000028102) Tsen54 (ENSMSIG00000028141) Caskin2 (ENSMSIG00000028161) Tmem94 (ENSMSIG00000028168) ENSMSIG00000028209 Grb2 (ENSMSIG00000028212) Slc25a19 (ENSMSIG00000028240) Mif4gd (ENSMSIG00000028258) Mrps7 (ENSMSIG00000028269) Gga3 (ENSMSIG00000028278) Nup85 (ENSMSIG00000028322) ENSMSIG00000028342 #22 Jpt1 (ENSMSIG00000028349) Armc7 (ENSMSIG00000028366) Nt5c (ENSMSIG00000028372) Slc16a5 (ENSMSIG00000028378) Trim80 (ENSMSIG00000028383) ENSMSIG00000028388 ENSMSIG00000028398 Mrpl58 (ENSMSIG00000028407) Cdr2l (ENSMSIG00000028417) Hid1 (ENSMSIG00000028424) Otop3 (ENSMSIG00000028450) Otop2 (ENSMSIG00000028457) Ush1g (ENSMSIG00000028465) Fads6 (ENSMSIG00000028470) Fdxr (ENSMSIG00000028471) Steppe mouse MODERN SPECIES 2060 ENSMSIG00000018269 #21 ENSMSIG00000018250 #22 ENSMSIG00000018221 #23 ENSMSIG00000018206 ENSMSIG00000018197 Gm9508 (ENSMSIG00000018192) Gm10272 (ENSMSIG00000018187) Gm10024 (ENSMSIG00000018183) Gm10142 (ENSMSIG00000018177) Krtap12-1 (ENSMSIG00000018172) Gm10100 (ENSMSIG00000018166) ENSMSIG00000018163 Lagomorpha ANCESTRAL SPECIES 342 ENSGT00940000156404 #25 ENSGT00940000154360.A.b ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000163845 ENSGT00510000047718 #24 Rabbit DUPLICATION Rabbit MODERN SPECIES 751 ENSOCUG00000021739 #22 UBE2G2 (ENSOCUG00000012944) #23 ENSOCUG00000033287 ENSOCUG00000032533 ENSOCUG00000014146 ENSOCUG00000037262 ENSOCUG00000037588 ENSOCUG00000033100 TSPEAR (ENSOCUG00000015149) #24 ENSOCUG00000000399 LRRC3 (ENSOCUG00000002572) ENSOCUG00000029179 #25 Rabbit MODERN SPECIES 506 ENSOCUG00000035369 ENSOCUG00000029349 ENSOCUG00000029998 ENSOCUG00000031281 ORYCUNV1R1510 (ENSOCUG00000034811) ENSOCUG00000036702 ENSOCUG00000024089 ENSOCUG00000029259 ENSOCUG00000004348 ENSOCUG00000034034 ENSOCUG00000032430 ENSOCUG00000039341 ENSOCUG00000024157 #22 Laurasiatheria ANCESTRAL SPECIES 2 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000163845 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT01020000234487 Laurasiatheria_a ANCESTRAL SPECIES 3 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000163845 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT01020000234487 Artiodactyla ANCESTRAL SPECIES 2 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT01020000234487 ENSGT00390000011821.b Suina ANCESTRAL SPECIES 35 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000163441.f.b.b ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT01020000234487 Chacoan peccary MODERN SPECIES 916 POFUT2 (ENSCWAG00000021320) ADARB1 (ENSCWAG00000021307) SLX9 (ENSCWAG00000021290) ITGB2 (ENSCWAG00000021248) PTTG1IP (ENSCWAG00000021232) #21 SUMO3 (ENSCWAG00000021223) #22 UBE2G2 (ENSCWAG00000021213) #23 Pig MODERN SPECIES 4 COL6A1 (ENSSSCG00000022506) PCBP3 (ENSSSCG00000023041) ENSSSCG00000030696 COL18A1 (ENSSSCG00000038089) ENSSSCG00000012088 ADARB1 (ENSSSCG00000012089) SLX9 (ENSSSCG00000028571) ITGB2 (ENSSSCG00000025133) PTTG1IP (ENSSSCG00000031249) #21 SUMO3 (ENSSSCG00000035795) #22 UBE2G2 (ENSSSCG00000027165) #23 ENSSSCG00000025793 ENSSSCG00000029038 ENSSSCG00000037222 ENSSSCG00000039836 ENSSSCG00000047876 ENSSSCG00000046681 ENSSSCG00000047309 ENSSSCG00000048449 ENSSSCG00000028768 TSPEAR (ENSSSCG00000022988) #24 LRRC3 (ENSSSCG00000053846) TRPM2 (ENSSSCG00000023762) #25 CFAP410 (ENSSSCG00000024500) PFKL (ENSSSCG00000028197) Artiodactyla_a ANCESTRAL SPECIES 8 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b ENSGT00940000154826 Camelidae ANCESTRAL SPECIES 38 ENSGT00390000007870 ENSGT00940000157800 ENSGT00940000165228 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b.j #22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Arabian camel MODERN SPECIES 7 SAP30BP (ENSCDRG00005005647) RECQL5 (ENSCDRG00005005744) SMIM6 (ENSCDRG00005005981) SMIM5 (ENSCDRG00005005996) ENSCDRG00005006040 LLGL2 (ENSCDRG00005006411) TSEN54 (ENSCDRG00005006499) CASKIN2 (ENSCDRG00005006534) TMEM94 (ENSCDRG00005006633) GRB2 (ENSCDRG00005006824) SLC25A19 (ENSCDRG00005006954) MIF4GD (ENSCDRG00005007027) MRPS7 (ENSCDRG00005007079) GGA3 (ENSCDRG00005007129) NUP85 (ENSCDRG00005007337) ENSCDRG00005007486 #22 JPT1 (ENSCDRG00005007621) ENSCDRG00005007642 ARMC7 (ENSCDRG00005007777) SLC16A5 (ENSCDRG00005007957) ENSCDRG00005007997 KCTD2 (ENSCDRG00005008073) ENSCDRG00005008115 MRPL58 (ENSCDRG00005008161) CDR2L (ENSCDRG00005008217) HID1 (ENSCDRG00005008264) OTOP3 (ENSCDRG00005008486) OTOP2 (ENSCDRG00005008538) USH1G (ENSCDRG00005008633) FADS6 (ENSCDRG00005008674) FDXR (ENSCDRG00005008777) Artiodactyla_b ANCESTRAL SPECIES 6 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b ENSGT00940000154826 Pecora ANCESTRAL SPECIES 8 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT01100000265026 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b Yarkand deer MODERN SPECIES 13 ENSCHYG00000006473 ENSCHYG00000006490 TP53INP1 (ENSCHYG00000006568) ENSCHYG00000006609 CCNE2 (ENSCHYG00000006642) INTS8 (ENSCHYG00000006742) DPY19L4 (ENSCHYG00000006979) ESRP1 (ENSCHYG00000007116) VIRMA (ENSCHYG00000007760) RAD54B (ENSCHYG00000008124) GEM (ENSCHYG00000008382) CDH17 (ENSCHYG00000008444) ENSCHYG00000008519 ENSCHYG00000008529 PDP1 (ENSCHYG00000008541) ENSCHYG00000008561 #22 TMEM67 (ENSCHYG00000008621) ENSCHYG00000009165 RBM12B (ENSCHYG00000009201) ENSCHYG00000009303 ENSCHYG00000009356 TRIQK (ENSCHYG00000009400) RUNX1T1 (ENSCHYG00000009466) ENSCHYG00000009900 LRRC69 (ENSCHYG00000009964) ENSCHYG00000010134 PIP4P2 (ENSCHYG00000010301) C8orf88 (ENSCHYG00000010352) ENSCHYG00000010442 CALB1 (ENSCHYG00000010474) DECR1 (ENSCHYG00000010587) Percora_a ANCESTRAL SPECIES 7 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT01100000265026 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b Bovidae ANCESTRAL SPECIES 9 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT01100000265026 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b Bovinae ANCESTRAL SPECIES 6 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT01100000265026 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b Bos ANCESTRAL SPECIES 7 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000163441.f.a.b.d ENSGT00940000163441.f.a.b.c.a.b.a.b.a.b.a.b ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT01100000265026 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 Bos_a ANCESTRAL SPECIES 5 ENSGT00390000011514 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000163441.f.a.b.d ENSGT00940000163441.f.a.b.c.a.b.a.a.a ENSGT00960000187239.b ENSGT00940000161526.b.i ENSGT00940000161526.b.j.a ENSGT00960000187239.a ENSGT00940000163441.f.a.b.c.b ENSGT00940000163441.f.a.b.c.a.b.a.b.a.b.a.b ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT01100000265026 Domestic yak MODERN SPECIES 4 AMPD3 (ENSBGRG00000004237) ADM (ENSBGRG00000004160) ENSBGRG00000004139 SBF2 (ENSBGRG00000003871) SWAP70 (ENSBGRG00000003749) ENSBGRG00000003714 WEE1 (ENSBGRG00000003666) ENSBGRG00000011132 ZNF143 (ENSBGRG00000010621) IPO7 (ENSBGRG00000010346) ENSBGRG00000010326 TMEM41B (ENSBGRG00000010234) DENND5A (ENSBGRG00000009763) SCUBE2 (ENSBGRG00000008891) NRIP3 (ENSBGRG00000008609) ENSBGRG00000008570 #22 ASCL3 (ENSBGRG00000008558) C11orf16 (ENSBGRG00000008516) ENSBGRG00000008233 DENND2B (ENSBGRG00000007364) ENSBGRG00000007115 TRIM66 (ENSBGRG00000007026) STK33 (ENSBGRG00000006761) ENSBGRG00000006613 RIC3 (ENSBGRG00000006512) TUB (ENSBGRG00000006223) EIF3F (ENSBGRG00000006058) ENSBGRG00000006022 ENSBGRG00000005999 ENSBGRG00000005965 ENSBGRG00000005955 Wild yak MODERN SPECIES 1051 POFUT2 (ENSBMUG00000002792) ADARB1 (ENSBMUG00000002765) SLX9 (ENSBMUG00000002589) ITGB2 (ENSBMUG00000001419) PTTG1IP (ENSBMUG00000000206) #21 SUMO3 (ENSBMUG00000000140) #22 ENSBMUG00000000080 #23 Bos_b ANCESTRAL SPECIES 5 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000163601 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000163441.f.a.b.c.a.b.a.a.a ENSGT00960000187239.b ENSGT00940000161526.b.i ENSGT00940000161526.b.j.a ENSGT00940000163441.f.a.b.c.b ENSGT00940000163441.f.b.b.c.b ENSGT00940000163441.f.a.b.c.a.b.a.b.a.b.b ENSGT00940000163441.f.b.b.c.a ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT01100000265026 Hybrid Bos Indicus MODERN SPECIES 6 ENSBIXG00005000080 SBF2 (ENSBIXG00005016555) ENSBIXG00005016647 SWAP70 (ENSBIXG00005016714) WEE1 (ENSBIXG00005016783) ENSBIXG00005016814 ZNF143 (ENSBIXG00005002751) IPO7 (ENSBIXG00005006019) ENSBIXG00005017064 TMEM41B (ENSBIXG00005017095) ENSBIXG00005017135 DENND5A (ENSBIXG00005002794) SCUBE2 (ENSBIXG00005006584) NRIP3 (ENSBIXG00005017604) TMEM9B (ENSBIXG00005017678) ENSBIXG00005017708 #22 ASCL3 (ENSBIXG00005017718) C11orf16 (ENSBIXG00005017732) AKIP1 (ENSBIXG00005007802) DENND2B (ENSBIXG00005018004) ENSBIXG00005018100 TRIM66 (ENSBIXG00005007053) STK33 (ENSBIXG00005002945) LMO1 (ENSBIXG00005018215) RIC3 (ENSBIXG00005018251) TUB (ENSBIXG00005018323) ENSBIXG00005018389 ENSBIXG00005018402 ENSBIXG00005018421 ENSBIXG00005018435 ENSBIXG00005018449 Cow DUPLICATION Cow MODERN SPECIES MCM3AP (ENSBTAG00000003148) LSS (ENSBTAG00000018936) SPATC1L (ENSBTAG00000020409) FTCD (ENSBTAG00000020404) COL6A2 (ENSBTAG00000019269) COL6A1 (ENSBTAG00000011802) ENSBTAG00000048318 PCBP3 (ENSBTAG00000030775) SLC19A1 (ENSBTAG00000024162) COL18A1 (ENSBTAG00000023907) POFUT2 (ENSBTAG00000007818) ADARB1 (ENSBTAG00000017486) SLX9 (ENSBTAG00000017010) ITGB2 (ENSBTAG00000017060) PTTG1IP (ENSBTAG00000021771) #21 SUMO3 (ENSBTAG00000017321) #22 UBE2G2 (ENSBTAG00000048090) #23 ENSBTAG00000050038 ENSBTAG00000051778 KRTAP12-2 (ENSBTAG00000018610) ENSBTAG00000053056 KRTAP10-8 (ENSBTAG00000040291) ENSBTAG00000052773 ENSBTAG00000037662 ENSBTAG00000051900 TSPEAR (ENSBTAG00000018607) #24 LRRC3 (ENSBTAG00000017882) TRPM2 (ENSBTAG00000021901) #25 CFAP410 (ENSBTAG00000019589) PFKL (ENSBTAG00000010658) ENSBTAG00000051579 Cow MODERN SPECIES 6 AMPD3 (ENSBTAG00000015821) ENSBTAG00000051340 ADM (ENSBTAG00000021048) SBF2 (ENSBTAG00000043981) SWAP70 (ENSBTAG00000001987) WEE1 (ENSBTAG00000005278) ZNF143 (ENSBTAG00000016074) ENSBTAG00000045658 IPO7 (ENSBTAG00000027722) ENSBTAG00000027723 TMEM41B (ENSBTAG00000001607) DENND5A (ENSBTAG00000006322) SCUBE2 (ENSBTAG00000020573) NRIP3 (ENSBTAG00000013366) TMEM9B (ENSBTAG00000008310) ENSBTAG00000004771 #22 ASCL3 (ENSBTAG00000032339) C15H11orf16 (ENSBTAG00000001917) AKIP1 (ENSBTAG00000001922) DENND2B (ENSBTAG00000005356) RPL27A (ENSBTAG00000005349) TRIM66 (ENSBTAG00000020890) STK33 (ENSBTAG00000011910) LMO1 (ENSBTAG00000016320) RIC3 (ENSBTAG00000004863) TUB (ENSBTAG00000004862) EIF3F (ENSBTAG00000004861) OR10A3F (ENSBTAG00000055217) OR10A3HP (ENSBTAG00000050520) OR10A3G (ENSBTAG00000053959) OR10A3I (ENSBTAG00000049963) Caprinae ANCESTRAL SPECIES 8 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000163601 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000163441.f.a.b.c.a.a.a ENSGT00940000161526.b.j.a.b ENSGT00940000163441.f.b.b.c.b ENSGT00940000163441.f.a.b.c.a.b.a.b.a.b.b ENSGT00940000163441.f.a.b.c.a.b.a.a.a.a ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00510000047493.n ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 Goat DUPLICATION Goat MODERN SPECIES 23 TFPI2 (ENSCHIG00000026816) CALCR (ENSCHIG00000012930) VPS50 (ENSCHIG00000012919) HEPACAM2 (ENSCHIG00000008983) ENSCHIG00000012415 SAMD9 (ENSCHIG00000007683) CDK6 (ENSCHIG00000011604) ENSCHIG00000025157 ENSCHIG00000021463 RBM48 (ENSCHIG00000015110) PEX1 (ENSCHIG00000027266) GATAD1 (ENSCHIG00000006633) ENSCHIG00000021464 ANKIB1 (ENSCHIG00000026782) KRIT1 (ENSCHIG00000023971) ENSCHIG00000010640 #22 LRRD1 (ENSCHIG00000018885) CYP51A1 (ENSCHIG00000009890) AKAP9 (ENSCHIG00000015192) MTERF1 (ENSCHIG00000013172) FZD1 (ENSCHIG00000012408) CDK14 (ENSCHIG00000004524) CLDN12 (ENSCHIG00000000615) ENSCHIG00000005960 SUN3 (ENSCHIG00000026852) C7orf57 (ENSCHIG00000013490) UPP1 (ENSCHIG00000014663) ABCA13 (ENSCHIG00000020126) ENSCHIG00000008014 VWC2 (ENSCHIG00000020940) ZPBP (ENSCHIG00000008321) Goat MODERN SPECIES 5 PLEKHF2 (ENSCHIG00000009121) ENSCHIG00000014016 TP53INP1 (ENSCHIG00000009037) CCNE2 (ENSCHIG00000022720) INTS8 (ENSCHIG00000014183) ENSCHIG00000008889 DPY19L4 (ENSCHIG00000020474) ESRP1 (ENSCHIG00000014128) ENSCHIG00000019947 VIRMA (ENSCHIG00000015977) RAD54B (ENSCHIG00000008230) GEM (ENSCHIG00000008651) CDH17 (ENSCHIG00000012379) ENSCHIG00000001629 PDP1 (ENSCHIG00000021127) ENSCHIG00000011909 #22 TMEM67 (ENSCHIG00000015650) RBM12B (ENSCHIG00000006790) ENSCHIG00000023975 ENSCHIG00000015464 TRIQK (ENSCHIG00000008695) RUNX1T1 (ENSCHIG00000014084) SLC26A7 (ENSCHIG00000016301) LRRC69 (ENSCHIG00000016924) PIP4P2 (ENSCHIG00000015234) C8orf88 (ENSCHIG00000011393) TMEM64 (ENSCHIG00000015622) CALB1 (ENSCHIG00000021026) DECR1 (ENSCHIG00000013816) NBN (ENSCHIG00000011173) OSGIN2 (ENSCHIG00000026429) Goat MODERN SPECIES MCM3AP (ENSCHIG00000025098) LSS (ENSCHIG00000013212) SPATC1L (ENSCHIG00000023038) FTCD (ENSCHIG00000010407) COL6A2 (ENSCHIG00000018004) ENSCHIG00000004889 PCBP3 (ENSCHIG00000015841) SLC19A1 (ENSCHIG00000025066) ENSCHIG00000013263 ENSCHIG00000020589 POFUT2 (ENSCHIG00000000514) ADARB1 (ENSCHIG00000018259) SLX9 (ENSCHIG00000017685) ITGB2 (ENSCHIG00000014136) PTTG1IP (ENSCHIG00000021017) #21 ENSCHIG00000015930 #22 UBE2G2 (ENSCHIG00000006556) #23 ENSCHIG00000024813 ENSCHIG00000011506 ENSCHIG00000006780 ENSCHIG00000000533 ENSCHIG00000015017 ENSCHIG00000010601 ENSCHIG00000026079 ENSCHIG00000025434 ENSCHIG00000010344 ENSCHIG00000017373 ENSCHIG00000014533 ENSCHIG00000011548 TSPEAR (ENSCHIG00000017708) #24 LRRC3 (ENSCHIG00000009418) Cetacea ANCESTRAL SPECIES 10 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b ENSGT00940000154826 Blue whale MODERN SPECIES 15 ENSBMSG00010004286 ENSBMSG00010004263 MCM3AP (ENSBMSG00010004232) LSS (ENSBMSG00010004134) FTCD (ENSBMSG00010004051) COL6A2 (ENSBMSG00010004034) COL6A1 (ENSBMSG00010004019) PCBP3 (ENSBMSG00010003986) SLC19A1 (ENSBMSG00010003963) COL18A1 (ENSBMSG00010003836) POFUT2 (ENSBMSG00010003795) ADARB1 (ENSBMSG00010003764) SLX9 (ENSBMSG00010007433) ITGB2 (ENSBMSG00010007391) PTTG1IP (ENSBMSG00010007362) #21 SUMO3 (ENSBMSG00010007354) #22 UBE2G2 (ENSBMSG00010007343) #23 ENSBMSG00010007332 ENSBMSG00010007310 ENSBMSG00010007295 TSPEAR (ENSBMSG00010007281) #24 LRRC3 (ENSBMSG00010007273) TRPM2 (ENSBMSG00010007233) #25 CFAP410 (ENSBMSG00010007203) PFKL (ENSBMSG00010007189) AIRE (ENSBMSG00010007103) DNMT3L (ENSBMSG00010007028) ICOSLG (ENSBMSG00010006991) GATD3 (ENSBMSG00010006949) PWP2 (ENSBMSG00010006911) TRAPPC10 (ENSBMSG00010006876) Odontoceti ANCESTRAL SPECIES 9 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162768.B ENSGT00940000163601 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b ENSGT00940000154826 Sperm whale MODERN SPECIES 19 PDE9A (ENSPCTG00005012834) HSF2BP (ENSPCTG00005014642) RRP1B (ENSPCTG00005014769) PDXK (ENSPCTG00005014904) CSTB (ENSPCTG00005015015) U2AF1 (ENSPCTG00005015178) CRYAA (ENSPCTG00005015249) AGPAT3 (ENSPCTG00005015313) TRAPPC10 (ENSPCTG00005015440) PWP2 (ENSPCTG00005015641) GATD3A (ENSPCTG00005015921) ICOSLG (ENSPCTG00005016088) DNMT3L (ENSPCTG00005016240) AIRE (ENSPCTG00005016581) PFKL (ENSPCTG00005017230) SUMO3 (ENSPCTG00005017367) #22 UBE2G2 (ENSPCTG00005017422) #23 TSPEAR (ENSPCTG00005017485) #24 ENSPCTG00005017543 ENSPCTG00005017608 LRRC3 (ENSPCTG00005017660) ENSPCTG00005017676 #25 ENSPCTG00005017771 #25 ITGB2 (ENSPCTG00005017857) ADARB1 (ENSPCTG00005017937) POFUT2 (ENSPCTG00005017994) SLC19A1 (ENSPCTG00005019281) PCBP3 (ENSPCTG00005019331) COL6A1 (ENSPCTG00005019551) COL6A2 (ENSPCTG00005020074) FTCD (ENSPCTG00005020224) Odontoceti_a ANCESTRAL SPECIES 8 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162768.B ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b ENSGT00940000154826 Odontoceti_b ANCESTRAL SPECIES 9 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162768.B ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b ENSGT00940000154826 Monodontidae ANCESTRAL SPECIES 11 ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162768.B ENSGT00940000163601 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b ENSGT00940000154826 Narwhal DUPLICATION Narwhal MODERN SPECIES 297 LSS (ENSMMNG00015000081) SPATC1L (ENSMMNG00015000171) FTCD (ENSMMNG00015000207) COL6A2 (ENSMMNG00015000293) ENSMMNG00015000354 ENSMMNG00015000368 ENSMMNG00015000412 PCBP3 (ENSMMNG00015000534) SLC19A1 (ENSMMNG00015000587) ENSMMNG00015000658 POFUT2 (ENSMMNG00015000876) ADARB1 (ENSMMNG00015001009) SLX9 (ENSMMNG00015001036) ITGB2 (ENSMMNG00015001076) PTTG1IP (ENSMMNG00015001159) #21 SUMO3 (ENSMMNG00015001196) #22 UBE2G2 (ENSMMNG00015001235) #23 TSPEAR (ENSMMNG00015001273) #24 TRPM2 (ENSMMNG00015001381) #25 CFAP410 (ENSMMNG00015001497) PFKL (ENSMMNG00015001526) AIRE (ENSMMNG00015001730) DNMT3L (ENSMMNG00015001913) ICOSLG (ENSMMNG00015001974) ENSMMNG00015002030 PWP2 (ENSMMNG00015002118) TRAPPC10 (ENSMMNG00015002229) AGPAT3 (ENSMMNG00015002330) RRP1 (ENSMMNG00015002366) CSTB (ENSMMNG00015002400) PDXK (ENSMMNG00015002424) Narwhal MODERN SPECIES 311 COL13A1 (ENSMMNG00015019392) FAM241B (ENSMMNG00015018581) NEUROG3 (ENSMMNG00015018559) TSPAN15 (ENSMMNG00015018513) TACR2 (ENSMMNG00015018482) HK1 (ENSMMNG00015018338) HKDC1 (ENSMMNG00015018235) SUPV3L1 (ENSMMNG00015018179) ENSMMNG00015018123 SRGN (ENSMMNG00015018086) KIFBP (ENSMMNG00015018048) DDX21 (ENSMMNG00015017919) DDX50 (ENSMMNG00015017887) ENSMMNG00015017869 STOX1 (ENSMMNG00015017814) ENSMMNG00015017786 #22 CCAR1 (ENSMMNG00015017705) ENSMMNG00015017672 TET1 (ENSMMNG00015017620) SLC25A16 (ENSMMNG00015017583) DNA2 (ENSMMNG00015017542) RUFY2 (ENSMMNG00015017154) HNRNPH3 (ENSMMNG00015017060) PBLD (ENSMMNG00015017026) MYPN (ENSMMNG00015016802) HERC4 (ENSMMNG00015016513) SIRT1 (ENSMMNG00015016378) DNAJC12 (ENSMMNG00015016250) LRRTM3 (ENSMMNG00015016206) CTNNA3 (ENSMMNG00015016145) ENSMMNG00015016066 Beluga whale DUPLICATION Beluga whale MODERN SPECIES 26 SAP30BP (ENSDLEG00000006870) RECQL5 (ENSDLEG00000006875) SMIM5 (ENSDLEG00000006889) ENSDLEG00000006899 ENSDLEG00000006941 LLGL2 (ENSDLEG00000006955) TSEN54 (ENSDLEG00000007044) CASKIN2 (ENSDLEG00000007101) TMEM94 (ENSDLEG00000007244) GRB2 (ENSDLEG00000007603) ENSDLEG00000007607 MIF4GD (ENSDLEG00000007609) MRPS7 (ENSDLEG00000007613) GGA3 (ENSDLEG00000007697) NUP85 (ENSDLEG00000009671) ENSDLEG00000010267 #22 JPT1 (ENSDLEG00000010301) NT5C (ENSDLEG00000010315) ARMC7 (ENSDLEG00000010329) SLC16A5 (ENSDLEG00000010349) ENSDLEG00000010366 ATP5H (ENSDLEG00000010375) MRPL58 (ENSDLEG00000010388) CDR2L (ENSDLEG00000010398) HID1 (ENSDLEG00000010418) OTOP3 (ENSDLEG00000010598) OTOP2 (ENSDLEG00000010663) USH1G (ENSDLEG00000010675) FADS6 (ENSDLEG00000010697) FDXR (ENSDLEG00000010749) GRIN2C (ENSDLEG00000010808) Beluga whale MODERN SPECIES 65 COL13A1 (ENSDLEG00000008033) FAM241B (ENSDLEG00000008202) NEUROG3 (ENSDLEG00000008229) TSPAN15 (ENSDLEG00000008241) TACR2 (ENSDLEG00000008300) HK1 (ENSDLEG00000008408) HKDC1 (ENSDLEG00000008490) SUPV3L1 (ENSDLEG00000008552) ENSDLEG00000008599 SRGN (ENSDLEG00000008630) KIFBP (ENSDLEG00000008645) DDX21 (ENSDLEG00000008677) DDX50 (ENSDLEG00000008715) ENSDLEG00000008782 STOX1 (ENSDLEG00000008804) ENSDLEG00000008946 #22 CCAR1 (ENSDLEG00000008968) TET1 (ENSDLEG00000009112) ENSDLEG00000009139 SLC25A16 (ENSDLEG00000009240) RUFY2 (ENSDLEG00000010171) HNRNPH3 (ENSDLEG00000011376) PBLD (ENSDLEG00000011403) ATOH7 (ENSDLEG00000011420) MYPN (ENSDLEG00000011459) HERC4 (ENSDLEG00000011906) SIRT1 (ENSDLEG00000011987) ENSDLEG00000012197 ENSDLEG00000012205 ENSDLEG00000012216 ENSDLEG00000012231 Vaquita DUPLICATION Vaquita MODERN SPECIES 15 MCM3AP (ENSPSNG00000015503) LSS (ENSPSNG00000015377) SPATC1L (ENSPSNG00000015232) FTCD (ENSPSNG00000014870) COL6A2 (ENSPSNG00000014738) COL6A1 (ENSPSNG00000014616) ENSPSNG00000014382 SLC19A1 (ENSPSNG00000014338) COL18A1 (ENSPSNG00000013985) POFUT2 (ENSPSNG00000013804) ADARB1 (ENSPSNG00000013670) SLX9 (ENSPSNG00000013591) ENSPSNG00000013509 ENSPSNG00000013374 PTTG1IP (ENSPSNG00000013293) #21 SUMO3 (ENSPSNG00000013255) #22 UBE2G2 (ENSPSNG00000013185) #23 TSPEAR (ENSPSNG00000012864) #24 LRRC3 (ENSPSNG00000012828) TRPM2 (ENSPSNG00000012233) #25 CFAP410 (ENSPSNG00000012160) PFKL (ENSPSNG00000012080) AIRE (ENSPSNG00000011555) DNMT3L (ENSPSNG00000011244) ICOSLG (ENSPSNG00000010983) GATD3 (ENSPSNG00000010801) PWP2 (ENSPSNG00000010734) TRAPPC10 (ENSPSNG00000010640) AGPAT3 (ENSPSNG00000010576) RRP1 (ENSPSNG00000010522) ENSPSNG00000010486 Vaquita MODERN SPECIES 7 MACROH2A2 (ENSPSNG00000020131) COL13A1 (ENSPSNG00000019849) FAM241B (ENSPSNG00000019661) NEUROG3 (ENSPSNG00000019648) TSPAN15 (ENSPSNG00000019618) TACR2 (ENSPSNG00000019582) HK1 (ENSPSNG00000019292) HKDC1 (ENSPSNG00000019172) SUPV3L1 (ENSPSNG00000019123) VPS26A (ENSPSNG00000019043) SRGN (ENSPSNG00000019006) KIFBP (ENSPSNG00000018956) DDX21 (ENSPSNG00000018882) DDX50 (ENSPSNG00000018841) STOX1 (ENSPSNG00000018733) ENSPSNG00000018685 #22 CCAR1 (ENSPSNG00000018574) ENSPSNG00000018517 TET1 (ENSPSNG00000018401) DNA2 (ENSPSNG00000018291) RUFY2 (ENSPSNG00000018016) HNRNPH3 (ENSPSNG00000017903) PBLD (ENSPSNG00000017813) ATOH7 (ENSPSNG00000017790) MYPN (ENSPSNG00000017208) HERC4 (ENSPSNG00000016699) SIRT1 (ENSPSNG00000016409) ENSPSNG00000016344 DNAJC12 (ENSPSNG00000016132) LRRTM3 (ENSPSNG00000016050) CTNNA3 (ENSPSNG00000015816) Laurasiatheria_b ANCESTRAL SPECIES 2 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000163845 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b Carnivora ANCESTRAL SPECIES 10 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000155183 ENSGT00940000163441.f.b.a.a ENSGT00940000163441.f.a.a.b ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 Felidae ANCESTRAL SPECIES 9 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000163441.f.b.a.a.c ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b Panthera ANCESTRAL SPECIES 17 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000163441.f.b.a.a.c ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b Panthera_a ANCESTRAL SPECIES 71 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000163441.f.b.a.a.c leopard MODERN SPECIES 167 DIP2A (ENSPPRG00000023404) YBEY (ENSPPRG00000003325) MCM3AP (ENSPPRG00000006018) LSS (ENSPPRG00000008675) SPATC1L (ENSPPRG00000008783) FTCD (ENSPPRG00000011402) COL6A2 (ENSPPRG00000024558) COL6A1 (ENSPPRG00000000566) PCBP3 (ENSPPRG00000003933) SLC19A1 (ENSPPRG00000004605) POFUT2 (ENSPPRG00000010612) ADARB1 (ENSPPRG00000012281) SLX9 (ENSPPRG00000012813) ITGB2 (ENSPPRG00000001670) PTTG1IP (ENSPPRG00000001982) #21 SUMO3 (ENSPPRG00000002862) #22 UBE2G2 (ENSPPRG00000003006) #23 ENSPPRG00000003469 Caniformia ANCESTRAL SPECIES ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000155183.a ENSGT00940000163441.f.b.a.a.a ENSGT00940000163441.f.b.a.a.b ENSGT00940000163441.f.a.a.b ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 Canidae ANCESTRAL SPECIES 39 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a.i ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b ENSGT00940000154826 Canis_lupus ANCESTRAL SPECIES 38 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a.i ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000163441.f.a.a.b.a ENSGT00940000161526.a.c ENSGT00940000161526.a.d ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 Dog MODERN SPECIES 24 ENSCAFG00845026433 MCM3AP (ENSCAFG00845025335) LSS (ENSCAFG00845024919) SPATC1L (ENSCAFG00845024849) FTCD (ENSCAFG00845024727) COL6A2 (ENSCAFG00845024255) COL6A1 (ENSCAFG00845024031) PCBP3 (ENSCAFG00845023560) ENSCAFG00845023388 COL18A1 (ENSCAFG00845022231) POFUT2 (ENSCAFG00845022063) ADARB1 (ENSCAFG00845021975) SLX9 (ENSCAFG00845021885) ITGB2 (ENSCAFG00845021592) PTTG1IP (ENSCAFG00845021456) #21 ENSCAFG00845021390 #22 UBE2G2 (ENSCAFG00845021306) #23 ENSCAFG00845021222 ENSCAFG00845021169 ENSCAFG00845021000 ENSCAFG00845020843 TSPEAR (ENSCAFG00845020761) #24 TRPM2 (ENSCAFG00845020419) #25 ICOSLG (ENSCAFG00845020326) PFKL (ENSCAFG00845020069) AIRE (ENSCAFG00845019838) DNMT3L (ENSCAFG00845019683) ICOSLG (ENSCAFG00845019541) GATD3 (ENSCAFG00845019382) PWP2 (ENSCAFG00845019135) TRAPPC10 (ENSCAFG00845018939) Caniformia_b ANCESTRAL SPECIES ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b ENSGT00940000154826 Mustelinae ANCESTRAL SPECIES 67 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b ENSGT00940000154826 American mink MODERN SPECIES 122 LSS (ENSNVIG00000008849) SPATC1L (ENSNVIG00000008811) FTCD (ENSNVIG00000008760) ENSNVIG00000008753 COL6A1 (ENSNVIG00000008572) PCBP3 (ENSNVIG00000008330) ENSNVIG00000008290 ENSNVIG00000008255 ENSNVIG00000008220 ENSNVIG00000008211 ENSNVIG00000008191 ADARB1 (ENSNVIG00000008112) SLX9 (ENSNVIG00000008023) ITGB2 (ENSNVIG00000007863) PTTG1IP (ENSNVIG00000007848) #21 SUMO3 (ENSNVIG00000007817) #22 UBE2G2 (ENSNVIG00000007799) #23 ENSNVIG00000007785 ENSNVIG00000007773 ENSNVIG00000007725 TSPEAR (ENSNVIG00000007674) #24 LRRC3 (ENSNVIG00000007665) TRPM2 (ENSNVIG00000007475) #25 ENSNVIG00000007455 PFKL (ENSNVIG00000007397) AIRE (ENSNVIG00000007211) ENSNVIG00000007199 ICOSLG (ENSNVIG00000007190) GATD3 (ENSNVIG00000007184) PWP2 (ENSNVIG00000007096) TRAPPC10 (ENSNVIG00000007089) Ferret DUPLICATION Ferret MODERN SPECIES 248 SLC19A1 (ENSMPUG00000010396) ENSMPUG00000010382 ENSMPUG00000019068 COL18A1 (ENSMPUG00000010362) ENSMPUG00000010360 ENSMPUG00000010357 POFUT2 (ENSMPUG00000010302) ADARB1 (ENSMPUG00000010296) ENSMPUG00000010290 SLX9 (ENSMPUG00000010279) ITGB2 (ENSMPUG00000010269) PTTG1IP (ENSMPUG00000010248) #21 ENSMPUG00000010234 #22 UBE2G2 (ENSMPUG00000010187) #23 ENSMPUG00000019067 TSPEAR (ENSMPUG00000010176) #24 LRRC3 (ENSMPUG00000019066) TRPM2 (ENSMPUG00000010155) #25 CFAP410 (ENSMPUG00000010108) PFKL (ENSMPUG00000010091) AIRE (ENSMPUG00000010031) ENSMPUG00000010029 DNMT3L (ENSMPUG00000010003) ICOSLG (ENSMPUG00000009996) GATD3 (ENSMPUG00000009943) PWP2 (ENSMPUG00000009936) TRAPPC10 (ENSMPUG00000009927) AGPAT3 (ENSMPUG00000009918) Ferret MODERN SPECIES 186 GALK1 (ENSMPUG00000013819) ITGB4 (ENSMPUG00000013821) SAP30BP (ENSMPUG00000013829) RECQL5 (ENSMPUG00000013833) ENSMPUG00000013837 LLGL2 (ENSMPUG00000013865) TSEN54 (ENSMPUG00000013870) CASKIN2 (ENSMPUG00000013874) TMEM94 (ENSMPUG00000013877) GRB2 (ENSMPUG00000013882) SLC25A19 (ENSMPUG00000013885) MIF4GD (ENSMPUG00000013909) MRPS7 (ENSMPUG00000013928) GGA3 (ENSMPUG00000013944) NUP85 (ENSMPUG00000013951) ENSMPUG00000013954 #22 JPT1 (ENSMPUG00000013971) NT5C (ENSMPUG00000013985) ARMC7 (ENSMPUG00000013987) SLC16A5 (ENSMPUG00000013991) ENSMPUG00000019916 ENSMPUG00000014018 KCTD2 (ENSMPUG00000014024) ENSMPUG00000014048 ENSMPUG00000014083 MRPL58 (ENSMPUG00000014086) CDR2L (ENSMPUG00000014096) HID1 (ENSMPUG00000014100) OTOP3 (ENSMPUG00000014106) ENSMPUG00000014110 ENSMPUG00000014114 Ursidae ANCESTRAL SPECIES 1 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000161526.a.a ENSGT00940000163441.f.b.a.a.a.c ENSGT00940000163441.f.b.a.a.b ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a.cb ENSGT00550000074981 ENSGT00390000003873 Ursus ANCESTRAL SPECIES 94 ENSGT00950000182997.a.b.b.a.m ENSGT00730000110871.a.a.a.b ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00950000183546 ENSGT00940000162185 ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000161526.a.a ENSGT00940000163441.f.a.a.b ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292.a ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a.cb ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b Polar bear DUPLICATION Polar bear MODERN SPECIES 185 ITGB4 (ENSUMAG00000009253) SAP30BP (ENSUMAG00000009122) ENSUMAG00000009118 RECQL5 (ENSUMAG00000009115) ENSUMAG00000009111 LLGL2 (ENSUMAG00000009023) TSEN54 (ENSUMAG00000008979) ENSUMAG00000008973 TMEM94 (ENSUMAG00000008703) GRB2 (ENSUMAG00000008668) SLC25A19 (ENSUMAG00000008660) MIF4GD (ENSUMAG00000008655) MRPS7 (ENSUMAG00000008652) GGA3 (ENSUMAG00000008648) NUP85 (ENSUMAG00000008643) ENSUMAG00000008640 #22 JPT1 (ENSUMAG00000008637) NT5C (ENSUMAG00000008633) ARMC7 (ENSUMAG00000008632) SLC16A5 (ENSUMAG00000008628) ENSUMAG00000008623 ENSUMAG00000008620 ENSUMAG00000008615 ATP5PD (ENSUMAG00000008611) MRPL58 (ENSUMAG00000008604) CDR2L (ENSUMAG00000008589) HID1 (ENSUMAG00000008253) OTOP3 (ENSUMAG00000008210) ENSUMAG00000008202 ENSUMAG00000008197 FADS6 (ENSUMAG00000008188) Polar bear MODERN SPECIES 394 DIP2A (ENSUMAG00000025037) PCNT (ENSUMAG00000025235) YBEY (ENSUMAG00000025236) MCM3AP (ENSUMAG00000025237) LSS (ENSUMAG00000025396) ENSUMAG00000025397 FTCD (ENSUMAG00000025398) COL6A2 (ENSUMAG00000025399) ENSUMAG00000025402 PCBP3 (ENSUMAG00000025403) POFUT2 (ENSUMAG00000025410) ADARB1 (ENSUMAG00000025411) SLX9 (ENSUMAG00000025416) ITGB2 (ENSUMAG00000025417) PTTG1IP (ENSUMAG00000025418) #21 ENSUMAG00000025419 #22 UBE2G2 (ENSUMAG00000025420) #23 ENSUMAG00000025421 ENSUMAG00000025422 ENSUMAG00000025423 ENSUMAG00000025425 TSPEAR (ENSUMAG00000025426) #24 LRRC3 (ENSUMAG00000025427) TRPM2 (ENSUMAG00000025428) #25 ENSUMAG00000025469 PFKL (ENSUMAG00000025470) ENSUMAG00000025471 ICOSLG (ENSUMAG00000025473) GATD3 (ENSUMAG00000025476) PWP2 (ENSUMAG00000025481) TRAPPC10 (ENSUMAG00000025503) Laurasiatheria_c ANCESTRAL SPECIES 2 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000163845 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b Equus ANCESTRAL SPECIES 42 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000163845 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a ENSGT00390000011821.b Donkey MODERN SPECIES 9 SPATC1L (ENSEASG00005007013) FTCD (ENSEASG00005007018) COL6A2 (ENSEASG00005007037) COL6A1 (ENSEASG00005035660) PCBP3 (ENSEASG00005007068) SLC19A1 (ENSEASG00005007070) COL18A1 (ENSEASG00005038430) POFUT2 (ENSEASG00005007081) ADARB1 (ENSEASG00005007085) SLX9 (ENSEASG00005023956) ENSEASG00005032799 ENSEASG00005020183 ENSEASG00005018136 ENSEASG00005036911 PTTG1IP (ENSEASG00005034537) #21 ENSEASG00005025870 #22 UBE2G2 (ENSEASG00005037598) #23 ENSEASG00005000235 #24 ENSEASG00005026028 ENSEASG00005026444 ENSEASG00005025990 ENSEASG00005032600 ENSEASG00005014722 ENSEASG00005037300 ENSEASG00005026527 ENSEASG00005033364 ENSEASG00005035707 TRPM2 (ENSEASG00005000375) #25 CFAP410 (ENSEASG00005001598) PFKL (ENSEASG00005001615) AIRE (ENSEASG00005001620) Horse MODERN SPECIES 18 ENSECAG00000047281 LSS (ENSECAG00000008899) SPATC1L (ENSECAG00000006870) FTCD (ENSECAG00000011979) COL6A2 (ENSECAG00000019436) COL6A1 (ENSECAG00000022731) ENSECAG00000047101 PCBP3 (ENSECAG00000012413) SLC19A1 (ENSECAG00000002116) COL18A1 (ENSECAG00000016361) POFUT2 (ENSECAG00000004992) ADARB1 (ENSECAG00000019917) SLX9 (ENSECAG00000016590) ITGB2 (ENSECAG00000023061) PTTG1IP (ENSECAG00000022770) #21 ENSECAG00000021271 #22 UBE2G2 (ENSECAG00000015327) #23 ENSECAG00000049876 ENSECAG00000015092 ENSECAG00000047135 ENSECAG00000015117 ENSECAG00000051879 ENSECAG00000051909 ENSECAG00000029396 TSPEAR (ENSECAG00000051756) #24 LRRC3 (ENSECAG00000005082) TSPEAR (ENSECAG00000008057) TRPM2 (ENSECAG00000023430) #25 PFKL (ENSECAG00000017863) AIRE (ENSECAG00000012924) DNMT3L (ENSECAG00000009690) Chiroptera ANCESTRAL SPECIES 35 ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162768.B ENSGT00960000191015 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000163441.f.a.a.b ENSGT00940000163441.f.b.b ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a Megabat MODERN SPECIES 2785 SUMO3 (ENSPVAG00000015248) #22 Microchiroptera ANCESTRAL SPECIES 37 ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162768.B ENSGT00960000191015 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j #22 ENSGT00940000158193 #23 ENSGT00940000163441.f.a.a.b ENSGT00940000163441.f.b.b ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a Greater horseshoe bat MODERN SPECIES 11 ENSRFEG00010001831 COL6A2 (ENSRFEG00010001753) COL6A1 (ENSRFEG00010001707) ENSRFEG00010001629 ENSRFEG00010001580 ENSRFEG00010001565 SLC19A1 (ENSRFEG00010001553) ENSRFEG00010001539 ENSRFEG00010001505 ENSRFEG00010001475 ENSRFEG00010001456 ADARB1 (ENSRFEG00010001412) SLX9 (ENSRFEG00010001351) ITGB2 (ENSRFEG00010001275) PTTG1IP (ENSRFEG00010001246) #21 SUMO3 (ENSRFEG00010001215) #22 UBE2G2 (ENSRFEG00010001187) #23 ENSRFEG00010001158 ENSRFEG00010001114 ENSRFEG00010001026 TSPEAR (ENSRFEG00010000980) #24 LRRC3 (ENSRFEG00010000940) TRPM2 (ENSRFEG00010000872) #25 CFAP410 (ENSRFEG00010000827) PFKL (ENSRFEG00010000776) AIRE (ENSRFEG00010000735) DNMT3L (ENSRFEG00010000669) ICOSLG (ENSRFEG00010000645) GATD3 (ENSRFEG00010000628) PWP2 (ENSRFEG00010000602) TRAPPC10 (ENSRFEG00010000559) Microbat DUPLICATION Microbat MODERN SPECIES 1228 ENSMLUG00000013364 PCBP3 (ENSMLUG00000003074) SLC19A1 (ENSMLUG00000015818) COL18A1 (ENSMLUG00000015768) ENSMLUG00000025632 POFUT2 (ENSMLUG00000013242) ADARB1 (ENSMLUG00000011328) SLX9 (ENSMLUG00000017651) ITGB2 (ENSMLUG00000003153) PTTG1IP (ENSMLUG00000003464) #21 ENSMLUG00000028601 #22 UBE2G2 (ENSMLUG00000011264) #23 ENSMLUG00000011524 ENSMLUG00000010897 ENSMLUG00000017019 TSPEAR (ENSMLUG00000011225) #24 LRRC3 (ENSMLUG00000011171) TRPM2 (ENSMLUG00000011096) #25 CFAP410 (ENSMLUG00000011059) PFKL (ENSMLUG00000010992) ENSMLUG00000010968 DNMT3L (ENSMLUG00000013954) GATD3 (ENSMLUG00000004837) PWP2 (ENSMLUG00000004823) TRAPPC10 (ENSMLUG00000004810) AGPAT3 (ENSMLUG00000004785) Microbat MODERN SPECIES 1419 GALK1 (ENSMLUG00000015425) ITGB4 (ENSMLUG00000015402) SAP30BP (ENSMLUG00000015391) RECQL5 (ENSMLUG00000015374) ENSMLUG00000015365 LLGL2 (ENSMLUG00000015307) TSEN54 (ENSMLUG00000015298) CASKIN2 (ENSMLUG00000015284) TMEM94 (ENSMLUG00000015265) GRB2 (ENSMLUG00000015262) SLC25A19 (ENSMLUG00000015251) MIF4GD (ENSMLUG00000015242) MRPS7 (ENSMLUG00000015237) GGA3 (ENSMLUG00000015225) NUP85 (ENSMLUG00000015211) ENSMLUG00000025342 #22 JPT1 (ENSMLUG00000015205) NT5C (ENSMLUG00000015199) ARMC7 (ENSMLUG00000012851) SLC16A5 (ENSMLUG00000012847) ENSMLUG00000030452 KCTD2 (ENSMLUG00000012842) ATP5PD (ENSMLUG00000010620) MRPL58 (ENSMLUG00000006752) HID1 (ENSMLUG00000003519) Anura ANCESTRAL SPECIES 337 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b #22 ENSGT00940000162422 Leishan spiny toad DUPLICATION Leishan spiny toad MODERN SPECIES 1129 LAMTOR3 (ENSLLEG00000024321) ENSLLEG00000024518 #22 ENSLLEG00000024571 ENSLLEG00000024639 ENSLLEG00000024729 TMEM94 (ENSLLEG00000024756) ENSLLEG00000024983 CASKIN2 (ENSLLEG00000025002) Leishan spiny toad MODERN SPECIES 10 EHHADH (ENSLLEG00000025485) C3orf70 (ENSLLEG00000025562) VPS8 (ENSLLEG00000025606) DBR1 (ENSLLEG00000025945) ENSLLEG00000026077 ENSLLEG00000026233 ARMC8 (ENSLLEG00000026719) ENSLLEG00000027635 ADPRH (ENSLLEG00000005739) ENSLLEG00000005810 LRRC3 (ENSLLEG00000005820) ENSLLEG00000005849 TSPEAR (ENSLLEG00000005865) #24 ENSLLEG00000005940 ENSLLEG00000005951 #23 ENSLLEG00000005983 #22 ENSLLEG00000006021 ENSLLEG00000006035 ENSLLEG00000006052 ITGB2 (ENSLLEG00000006090) SLX9 (ENSLLEG00000006278) ENSLLEG00000006395 ENSLLEG00000006415 ADARB1 (ENSLLEG00000006438) POFUT2 (ENSLLEG00000006574) ENSLLEG00000006663 ENSLLEG00000006698 UNC80 (ENSLLEG00000006882) ENSLLEG00000007252 KANSL1L (ENSLLEG00000007272) ACADL (ENSLLEG00000007338) Frog MODERN SPECIES 1 otop2 (ENSXETG00000027433) hid1 (ENSXETG00000027066) ENSXETG00000006252 otop3 (ENSXETG00000027068) ENSXETG00000037847 cdr2l (ENSXETG00000045622) mrpl58 (ENSXETG00000012505) atp5pd (ENSXETG00000012507) KCTD2 (ENSXETG00000046994) slc16a5 (ENSXETG00000012500) armc7 (ENSXETG00000030134) mif4gd (ENSXETG00000027063) mrps7 (ENSXETG00000012510) gga3 (ENSXETG00000012511) nup85 (ENSXETG00000027060) sumo2 (ENSXETG00000012516) #22 jpt1 (ENSXETG00000043697) grb2 (ENSXETG00000012520) tmem94 (ENSXETG00000012524) ENSXETG00000045143 caskin2 (ENSXETG00000012526) tsen54 (ENSXETG00000012532) llgl2 (ENSXETG00000012529) myo15b (ENSXETG00000032978) recql5 (ENSXETG00000032721) ENSXETG00000044674 sap30bp (ENSXETG00000012553) itgb4 (ENSXETG00000012556) galk1 (ENSXETG00000012573) ENSXETG00000037090 ENSXETG00000047269 Coelacanth DUPLICATION Coelacanth MODERN SPECIES 661 GRB2 (ENSLACG00000000591) SLC25A19 (ENSLACG00000001936) MIF4GD (ENSLACG00000002565) MRPS7 (ENSLACG00000003039) GGA3 (ENSLACG00000003280) NUP85 (ENSLACG00000004308) ENSLACG00000004990 #22 NT5C (ENSLACG00000005934) armc7 (ENSLACG00000006029) ENSLACG00000006321 ATP5PD (ENSLACG00000007618) ENSLACG00000007007 KCTD2 (ENSLACG00000007317) MRPL58 (ENSLACG00000008356) CDR2L (ENSLACG00000008595) HID1 (ENSLACG00000009154) OTOP3 (ENSLACG00000009986) ENSLACG00000010122 ENSLACG00000010470 USH1G (ENSLACG00000010674) FADS6 (ENSLACG00000010946) FDXR (ENSLACG00000011238) Coelacanth MODERN SPECIES 627 VWC2L (ENSLACG00000015603) ENSLACG00000014837 ABCA12 (ENSLACG00000014253) ENSLACG00000012612 #22 FTCD (ENSLACG00000012351) ENSLACG00000022203 hnmt (ENSLACG00000012024) C21orf58 (ENSLACG00000011823) YBEY (ENSLACG00000011567) MCM3AP (ENSLACG00000010838) LSS (ENSLACG00000010380) ENSLACG00000009797 ENSLACG00000008603 ENSLACG00000005882 Actinopterygii ANCESTRAL SPECIES 170 ENSGT00940000153239.A ENSGT00940000158179 ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000010672 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000162528 ENSGT00940000154913 ENSGT00950000183009 ENSGT00940000155489.a ENSGT00390000011514 ENSGT00730000110871.a.a.a.b ENSGT00940000164909 ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000162768.B ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00940000167200 Reedfish MODERN SPECIES 2 rgs14a (ENSECRG00000015228) ENSECRG00000015199 ENSECRG00000015117 adra2da (ENSECRG00000015090) ENSECRG00000015065 ENSECRG00000014951 rbm22 (ENSECRG00000014868) ndst1a (ENSECRG00000014727) rps14 (ENSECRG00000014674) TLR2 (ENSECRG00000014613) SLC35A4 (ENSECRG00000014565) ENSECRG00000014538 APBB3 (ENSECRG00000014499) SRA1 (ENSECRG00000014471) HMGXB3 (ENSECRG00000014406) sumo3a (ENSECRG00000014340) #22 ENSECRG00000014313 csf1ra (ENSECRG00000014257) pdgfrb (ENSECRG00000014164) cdx1b (ENSECRG00000014111) camk2a (ENSECRG00000013873) ARSI (ENSECRG00000013768) tmco6 (ENSECRG00000013730) ndufa2 (ENSECRG00000013696) ik (ENSECRG00000013652) wdr55 (ENSECRG00000013620) ENSECRG00000013595 hars (ENSECRG00000011628) DND1 (ENSECRG00000011600) zmat2 (ENSECRG00000011584) ENSECRG00000011487 Neopterygii ANCESTRAL SPECIES 61 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000162528 ENSGT00940000154913 ENSGT00950000183009 ENSGT00940000155489.a ENSGT00390000011514 ENSGT00730000110871.a.a.a.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000161051.a.a.a.a.b ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909 ENSGT00390000004977 #21 ENSGT00950000182895.a.b #22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00950000183165.a ENSGT00950000183165.b.a.e.b ENSGT00940000160220 ENSGT00940000154095.b.b.a.b ENSGT00550000075037 ENSGT00940000160059.a.b ENSGT00430000031142 ENSGT00940000154095.b.b.b ENSGT00390000003164 ENSGT00940000155522 ENSGT00390000016940.c.b ENSGT00950000182905.a.a.a.a.a.b ENSGT00940000164964.b Spotted gar MODERN SPECIES 650 ehhadh (ENSLOCG00000009587) tmem41ab (ENSLOCG00000009578) igf2bp2b (ENSLOCG00000009564) ENSLOCG00000009558 ENSLOCG00000009546 zgc:112416 (ENSLOCG00000009535) pcnt (ENSLOCG00000009517) ENSLOCG00000009506 ENSLOCG00000009495 atg9a (ENSLOCG00000009485) ANKZF1 (ENSLOCG00000009473) glb1l (ENSLOCG00000009458) ENSLOCG00000009450 ENSLOCG00000009424 ENSLOCG00000009417 #21 sumo3a (ENSLOCG00000009407) #22 ube2g2 (ENSLOCG00000009402) #23 ENSLOCG00000009398 TSPEAR (ENSLOCG00000009387) #24 lrrc3 (ENSLOCG00000017837) pcbp3 (ENSLOCG00000009369) SLC19A1 (ENSLOCG00000009360) ENSLOCG00000009336 ENSLOCG00000009325 ENSLOCG00000009315 SPEGNB (ENSLOCG00000009304) spega (ENSLOCG00000009286) inha (ENSLOCG00000009276) gjc4b (ENSLOCG00000009261) stk11ip (ENSLOCG00000009252) slc4a3 (ENSLOCG00000009239) Osteoglossocephalai DUPLICATION Osteoglossocephalai DUPLICATION Osteoglossocephalai ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Clupeocephala ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Euteleosteomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Protacanthopterygii ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Salmoninae ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Salmoninae_a ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Salmo ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Atlantic salmon DUPLICATION Atlantic salmon MODERN SPECIES 17 ENSSSAG00000086144 ENSSSAG00000093415 ENSSSAG00000099444 ENSSSAG00000041238 ENSSSAG00000097596 ENSSSAG00000113095 ENSSSAG00000083408 ENSSSAG00000087915 bmpr2b (ENSSSAG00000122021) ENSSSAG00000103937 ENSSSAG00000094760 sumo3 (ENSSSAG00000041220) #22 ENSSSAG00000096864 ENSSSAG00000119572 ENSSSAG00000092405 ENSSSAG00000086430 ENSSSAG00000084688 ENSSSAG00000107570 ENSSSAG00000113315 ENSSSAG00000101504 ENSSSAG00000120995 ENSSSAG00000121545 abi2a (ENSSSAG00000117505) ENSSSAG00000041203 ENSSSAG00000099334 CTLA4 (ENSSSAG00000093109) ENSSSAG00000097375 Atlantic salmon MODERN SPECIES 14 nek4 (ENSSSAG00000078205) spcs1 (ENSSSAG00000087655) glt8d1 (ENSSSAG00000078213) gnl3 (ENSSSAG00000078239) ENSSSAG00000078259 ENSSSAG00000078273 ENSSSAG00000089968 phc2b (ENSSSAG00000078282) ENSSSAG00000078313 ENSSSAG00000078443 padi2 (ENSSSAG00000079199) ENSSSAG00000079312 ENSSSAG00000079325 ENSSSAG00000103215 ENSSSAG00000079335 ENSSSAG00000086662 #22 cd34 (ENSSSAG00000079346) ENSSSAG00000079487 ENSSSAG00000080689 ENSSSAG00000080735 yod1 (ENSSSAG00000111797) zgc:158258 (ENSSSAG00000094334) kif17 (ENSSSAG00000080862) hp1bp3 (ENSSSAG00000106347) EIF4G3 (ENSSSAG00000080942) ece1 (ENSSSAG00000081046) ppb (ENSSSAG00000081220) ENSSSAG00000081261 ENSSSAG00000085467 ENSSSAG00000121243 ephb2b (ENSSSAG00000073864) River trout MODERN SPECIES 16 spoplb (ENSSTUG00000010901) NXPH2 (ENSSTUG00000010889) ENSSTUG00000010879 ENSSTUG00000010874 hycc2 (ENSSTUG00000010632) xrcc5 (ENSSTUG00000010206) ENSSTUG00000010186 igf2bp2a (ENSSTUG00000010052) ENSSTUG00000010031 ENSSTUG00000006604 sumo3a (ENSSTUG00000006502) #22 ENSSTUG00000006477 bmpr2b (ENSSTUG00000006363) cbln6 (ENSSTUG00000006354) ENSSTUG00000006350 RAPH1 (ENSSTUG00000006337) ENSSTUG00000006325 ENSSTUG00000006300 ABCB6 (ENSSTUG00000005724) ENSSTUG00000005689 ENSSTUG00000005675 ENSSTUG00000005668 ENSSTUG00000005657 ENSSTUG00000005641 mnx2a (ENSSTUG00000005637) ENSSTUG00000005631 Acanthomorphata ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Euacanthomorphacea ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Percomorphaceae ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Percomorphaceae_B ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Ovalentaria ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Atherinomorphae ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Oryzias ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Oryzias_b ANCESTRAL SPECIES 12 ENSGT00950000183049.C.a.b ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.u.a #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a.e.b ENSGT00940000155095.i.a.e.a ENSGT00940000155095.i.a.f ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00530000063883 ENSGT00940000154800.k.a Indian medaka MODERN SPECIES acvr1l (ENSOMEG00000012435) otomp (ENSOMEG00000012488) ENSOMEG00000012518 hs6st1b (ENSOMEG00000001025) ENSOMEG00000012565 ENSOMEG00000012606 ENSOMEG00000012623 ENSOMEG00000012714 ola1 (ENSOMEG00000012796) ENSOMEG00000012826 ENSOMEG00000012852 pcnt (ENSOMEG00000013043) atg9a (ENSOMEG00000013216) ENSOMEG00000013326 ENSOMEG00000013356 #21 sumo3a (ENSOMEG00000013372) #22 TSPEAR (ENSOMEG00000000338) #24 ENSOMEG00000013489 fabp7a (ENSOMEG00000013438) ENSOMEG00000013513 fyna (ENSOMEG00000013551) marcksb (ENSOMEG00000000346) col10a1a (ENSOMEG00000013605) fhl5 (ENSOMEG00000013623) FUT9 (ENSOMEG00000013634) FUT9 (ENSOMEG00000013640) ENSOMEG00000013646 fut9a (ENSOMEG00000013654) manea (ENSOMEG00000013663) ppp1cb (ENSOMEG00000000348) ENSOMEG00000013709 Ovalentaria_B ANCESTRAL SPECIES 12 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000177394 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.a #22 ENSGT00950000182895.a.b.v.k #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241.r ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A Pomacentridae ANCESTRAL SPECIES 17 ENSGT00940000157608 ENSGT00940000177394 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913.q ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00950000182895.a.b.u.a #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241.q.b ENSGT00940000159241.q.a ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 Pomacentridae_A ANCESTRAL SPECIES 14 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913.q ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00950000182895.a.b.u.a #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241.q.b ENSGT00940000159241.q.a ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 Spiny chromis MODERN SPECIES 1563 ENSAPOG00000007314 #21 sumo3a (ENSAPOG00000007349) #22 FMNL2 (ENSAPOG00000007485) prpf40a (ENSAPOG00000007544) rprmb (ENSAPOG00000007585) GALNT13 (ENSAPOG00000007642) Amphiprion ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Orange clownfish MODERN SPECIES 9 ENSAPEG00000013891 d2hgdh (ENSAPEG00000013915) acvr1l (ENSAPEG00000013964) otomp (ENSAPEG00000013993) hs6st1b (ENSAPEG00000014035) uggt1 (ENSAPEG00000014074) ENSAPEG00000014249 ola1 (ENSAPEG00000014283) TRA2B (ENSAPEG00000014341) ENSAPEG00000014362 ENSAPEG00000014411 ENSAPEG00000014637 atg9a (ENSAPEG00000014643) ENSAPEG00000014709 ENSAPEG00000014846 #21 sumo3a (ENSAPEG00000014857) #22 TSPEAR (ENSAPEG00000014885) #24 ENSAPEG00000014934 fabp7a (ENSAPEG00000014966) ENSAPEG00000014978 fyna (ENSAPEG00000015022) marcksb (ENSAPEG00000015095) col10a1a (ENSAPEG00000015130) ENSAPEG00000015150 fhl5 (ENSAPEG00000015239) fut9a (ENSAPEG00000015587) manea (ENSAPEG00000015589) ppp1cb (ENSAPEG00000015594) ENSAPEG00000015618 ypel5 (ENSAPEG00000015650) lclat1 (ENSAPEG00000015662) Cichlidae ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Pseudocrenilabrinae ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Haplochromini ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Haplochromini_A ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Haplochromini_B ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Zebra mbuna MODERN SPECIES 1098 MARCHF4 (ENSMZEG00005007652) SMARCAL1 (ENSMZEG00005007660) ENSMZEG00005007691 nme9 (ENSMZEG00005007697) zgc:162707 (ENSMZEG00005007724) ehhadh (ENSMZEG00005007744) tmem41aa (ENSMZEG00005007760) igf2bp2a (ENSMZEG00005007777) tra2b (ENSMZEG00005007817) ENSMZEG00005007848 ENSMZEG00005007865 ANKZF1 (ENSMZEG00005007906) glb1l (ENSMZEG00005007880) ENSMZEG00005007928 ENSMZEG00005007958 #21 sumo3a (ENSMZEG00005007970) #22 FMNL2 (ENSMZEG00005008001) prpf40a (ENSMZEG00005008113) rprmb (ENSMZEG00005008152) GALNT13 (ENSMZEG00005008166) KCNJ3 (ENSMZEG00005008210) nr4a2a (ENSMZEG00005008220) ENSMZEG00005008236 GALNT5 (ENSMZEG00005008302) CYTIP (ENSMZEG00005008668) ACVR1C (ENSMZEG00005008690) ENSMZEG00005008721 ENSMZEG00005008772 upp2 (ENSMZEG00005008793) ENSMZEG00005008806 PKP4 (ENSMZEG00005008828) Lyretail cichlid MODERN SPECIES 303 SMARCAL1 (ENSNBRG00000016273) ENSNBRG00000016254 nme9 (ENSNBRG00000016220) zgc:162707 (ENSNBRG00000016203) ehhadh (ENSNBRG00000016194) tmem41aa (ENSNBRG00000016175) igf2bp2a (ENSNBRG00000016140) tra2b (ENSNBRG00000016092) ENSNBRG00000016058 ENSNBRG00000016037 ENSNBRG00000016024 ENSNBRG00000016017 glb1l (ENSNBRG00000015985) ENSNBRG00000015910 ENSNBRG00000015895 sumo3a (ENSNBRG00000015884) #22 FMNL2 (ENSNBRG00000015789) prpf40a (ENSNBRG00000015715) rprmb (ENSNBRG00000015702) GALNT13 (ENSNBRG00000015668) KCNJ3 (ENSNBRG00000015655) nr4a2a (ENSNBRG00000015630) ENSNBRG00000015589 GALNT5 (ENSNBRG00000015521) CYTIP (ENSNBRG00000015483) ACVR1C (ENSNBRG00000015465) ENSNBRG00000015421 ENSNBRG00000015405 upp2 (ENSNBRG00000015385) CCDC148 (ENSNBRG00000015355) ENSNBRG00000015341 Midas cichlid MODERN SPECIES 1312 MARCHF4 (ENSACIG00000001550) SMARCAL1 (ENSACIG00000001500) ENSACIG00000001490 nme9 (ENSACIG00000001452) zgc:162707 (ENSACIG00000001437) ehhadh (ENSACIG00000001368) tmem41aa (ENSACIG00000001348) igf2bp2a (ENSACIG00000001308) tra2b (ENSACIG00000001289) ENSACIG00000001261 ENSACIG00000001218 ANKZF1 (ENSACIG00000001142) glb1l (ENSACIG00000001086) ENSACIG00000000965 ENSACIG00000000950 sumo3a (ENSACIG00000000937) #22 FMNL2 (ENSACIG00000000871) prpf40a (ENSACIG00000000698) rprmb (ENSACIG00000000687) GALNT13 (ENSACIG00000000648) KCNJ3 (ENSACIG00000000634) nr4a2a (ENSACIG00000000618) ENSACIG00000000585 GALNT5 (ENSACIG00000000459) CYTIP (ENSACIG00000000423) ACVR1C (ENSACIG00000000392) ACVR1 (ENSACIG00000000364) ENSACIG00000000343 upp2 (ENSACIG00000000315) CCDC148 (ENSACIG00000000292) PKP4 (ENSACIG00000000218) Percomorphaceae_C ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Percomorphaceae_D ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Carangaria ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Carangaria_A ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Barramundi perch MODERN SPECIES 99 ENSLCAG00010015830 ENSLCAG00010015834 d2hgdh (ENSLCAG00010015841) acvr1l (ENSLCAG00010015849) otomp (ENSLCAG00010015857) hs6st1b (ENSLCAG00010015864) uggt1 (ENSLCAG00010015970) ENSLCAG00010016383 ola1 (ENSLCAG00010016395) TRA2B (ENSLCAG00010016418) ENSLCAG00010016424 zgc:112416 (ENSLCAG00010016440) atg9a (ENSLCAG00010016447) ENSLCAG00010016502 ENSLCAG00010016689 #21 sumo3a (ENSLCAG00010016693) #22 TSPEAR (ENSLCAG00010016705) #24 ENSLCAG00010016720 fabp7a (ENSLCAG00010016736) ENSLCAG00010016752 ENSLCAG00010016768 fyna (ENSLCAG00010016802) marcksb (ENSLCAG00010016960) col10a1a (ENSLCAG00010016962) ENSLCAG00010016964 fhl5 (ENSLCAG00010016967) fut9a (ENSLCAG00010016968) manea (ENSLCAG00010016970) ppp1cb (ENSLCAG00010016977) ypel5 (ENSLCAG00010017005) lclat1 (ENSLCAG00010017009) Anabantaria ANCESTRAL SPECIES 10 ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000011514 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.u.a #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT01090000260229 ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00940000154800.k.a ENSGT00950000182836.a Anabantoidei ANCESTRAL SPECIES 9 ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000011514 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.u.a #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT01090000260229 ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00940000154800.k.a ENSGT00950000182836.a Climbing perch MODERN SPECIES 13 ENSATEG00000009018 ENSATEG00000009066 d2hgdh (ENSATEG00000028489) acvr1l (ENSATEG00000009120) otomp (ENSATEG00000009157) ENSATEG00000009178 uggt1 (ENSATEG00000009227) ENSATEG00000009325 ENSATEG00000009394 ENSATEG00000009454 ENSATEG00000009470 ENSATEG00000009914 atg9a (ENSATEG00000009971) ENSATEG00000010059 ENSATEG00000010197 #21 sumo3a (ENSATEG00000019871) #22 ENSATEG00000010230 #24 ENSATEG00000010263 fabp7a (ENSATEG00000010300) ENSATEG00000010309 ENSATEG00000026366 fyna (ENSATEG00000010348) marcksb (ENSATEG00000010367) col10a1a (ENSATEG00000010374) ENSATEG00000010384 fhl5 (ENSATEG00000010395) fut9a (ENSATEG00000010415) manea (ENSATEG00000010469) ENSATEG00000010490 ENSATEG00000025350 ENSATEG00000010527 Zig-zag eel DUPLICATION Zig-zag eel MODERN SPECIES 14 ENSMAMG00000025616 ENSMAMG00000003424 d2hgdh (ENSMAMG00000003448) acvr1l (ENSMAMG00000003474) otomp (ENSMAMG00000003486) ENSMAMG00000003527 uggt1 (ENSMAMG00000003544) ENSMAMG00000003672 ENSMAMG00000003717 ENSMAMG00000003753 ENSMAMG00000003776 ENSMAMG00000004115 atg9a (ENSMAMG00000004137) ENSMAMG00000004167 ENSMAMG00000004297 #21 sumo3a (ENSMAMG00000004310) #22 ENSMAMG00000004336 #24 ENSMAMG00000004446 fabp7a (ENSMAMG00000004479) ENSMAMG00000026988 ENSMAMG00000005383 fyna (ENSMAMG00000005399) marcksb (ENSMAMG00000005439) col10a1a (ENSMAMG00000005445) ENSMAMG00000005451 fhl5 (ENSMAMG00000005467) fut9a (ENSMAMG00000005489) ENSMAMG00000005494 ENSMAMG00000005536 ENSMAMG00000005546 ENSMAMG00000026496 Zig-zag eel MODERN SPECIES 13 ENSMAMG00000000772 ENSMAMG00000000791 ENSMAMG00000000828 nme9 (ENSMAMG00000000849) zgc:162707 (ENSMAMG00000025518) ehhadh (ENSMAMG00000000910) tmem41aa (ENSMAMG00000000927) igf2bp2a (ENSMAMG00000000969) tra2b (ENSMAMG00000001051) ENSMAMG00000001075 ENSMAMG00000001094 ENSMAMG00000001160 glb1l (ENSMAMG00000001126) ENSMAMG00000001186 ENSMAMG00000001376 #21 ENSMAMG00000001425 #22 FMNL2 (ENSMAMG00000001863) prpf40a (ENSMAMG00000002017) RPRM (ENSMAMG00000002055) GALNT13 (ENSMAMG00000002060) KCNJ3 (ENSMAMG00000002093) ENSMAMG00000002101 nr4a2a (ENSMAMG00000002132) ENSMAMG00000002159 GALNT5 (ENSMAMG00000002211) ENSMAMG00000025404 CYTIP (ENSMAMG00000002452) ACVR1C (ENSMAMG00000002492) ENSMAMG00000002523 ENSMAMG00000002537 ENSMAMG00000025700 Otomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Otophysi ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Characiphysae ANCESTRAL SPECIES 32 ENSGT00940000164964.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00940000181146 ENSGT00940000161051.a.a.a.a.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.a #22 ENSGT00510000047718.d #24 ENSGT00950000183009.db.b ENSGT00940000154913 ENSGT00940000163412 ENSGT00940000157516 ENSGT00390000006618 ENSGT00390000010672 ENSGT00390000005923 ENSGT00940000158179.a ENSGT00940000156083 ENSGT00940000157563 ENSGT00730000111163 ENSGT00940000159160 ENSGT00550000075118 ENSGT00390000009001 Characiphysae_b ANCESTRAL SPECIES 205 ENSGT00940000164964.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00940000181146 ENSGT00940000161051.a.a.a.a.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.a #22 ENSGT00510000047718.d #24 ENSGT00950000183009.db.b ENSGT00940000154913 ENSGT00940000163412 ENSGT00940000157516 ENSGT00390000005923 Electric eel MODERN SPECIES 91 cops8 (ENSEEEG00000021481) ENSEEEG00000021479 ENSEEEG00000021474 RANBP2 (ENSEEEG00000021379) SLC5A7 (ENSEEEG00000021356) CLDN14 (ENSEEEG00000021355) ENSEEEG00000021351 ENSEEEG00000021252 ENSEEEG00000021234 ENSEEEG00000021231 ENSEEEG00000021232 glb1l (ENSEEEG00000021094) ENSEEEG00000021084 ENSEEEG00000021081 ENSEEEG00000021079 #21 ENSEEEG00000021058 #22 TSPEAR (ENSEEEG00000021055) #24 tra2b (ENSEEEG00000021051) ENSEEEG00000021049 igf2bp2a (ENSEEEG00000020633) tmem41aa (ENSEEEG00000020605) ehhadh (ENSEEEG00000020602) FAM171B (ENSEEEG00000020598) lrrc3 (ENSEEEG00000020597) pcbp3 (ENSEEEG00000020591) col18a1a (ENSEEEG00000020577) ENSEEEG00000020558 CTDSP1 (ENSEEEG00000020551) SPEGNB (ENSEEEG00000020549) ENSEEEG00000020548 ENSEEEG00000020543 Cyprinoidei ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.a #22 Zebrafish MODERN SPECIES 21 marchf7 (ENSDARG00000057772) FAM171B (ENSDARG00000096271) ENSDARG00000096375 zswim2 (ENSDARG00000075700) ENSDARG00000096384 CALCRL (ENSDARG00000011571) GULP1 (ENSDARG00000057833) ENSDARG00000024847 ENSDARG00000079945 ENSDARG00000073837 zgc:112416 (ENSDARG00000044549) pcnt (ENSDARG00000033012) atg9a (ENSDARG00000044551) ENSDARG00000074723 pttg1ipa (ENSDARG00000090156) sumo3a (ENSDARG00000028119) #22 ENSDARG00000016750 coq7 (ENSDARG00000062594) notum2 (ENSDARG00000088411) ccr7 (ENSDARG00000044561) cycsb (ENSDARG00000044562) ENSDARG00000096239 nfe2l2b (ENSDARG00000089697) mtx2 (ENSDARG00000029415) lnpk (ENSDARG00000006639) atp5mc3b (ENSDARG00000009447) chrna1 (ENSDARG00000009021) ENSDARG00000071084 GPR155 (ENSDARG00000071086) ola1 (ENSDARG00000044565) SP3 (ENSDARG00000007812) Osteoglossiformes ANCESTRAL SPECIES 86 ENSGT00940000155353.a.a.a ENSGT01030000234646.B.a.a.b.f ENSGT00940000164127.b ENSGT00940000156075.a.a.k ENSGT00940000163262.a ENSGT00940000154076.B.b ENSGT00390000000673.a.a ENSGT00940000162304.b ENSGT00730000111135 ENSGT00910000144296.b ENSGT00940000156851 ENSGT01030000234635.a.b.a.b.b.b ENSGT00950000182942.a.b ENSGT00940000164909.d ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.u.a #22 ENSGT00510000047718.c.a #24 ENSGT00980000199010 ENSGT00940000156449.d ENSGT00950000183046.a.a.gb ENSGT00390000005530.a.a.l ENSGT00390000013916 ENSGT00940000153534.A ENSGT00940000154319.c.b ENSGT00940000172395 ENSGT00940000158239.a.b.a ENSGT00940000159606 ENSGT00940000156444.e ENSGT00390000005159.l ENSGT00390000009001 ENSGT00940000156552.c.a.h P. kingsleyae MODERN SPECIES 8 PDK1 (ENSPKIG00000005371) ENSPKIG00000005245 RAPGEF4 (ENSPKIG00000005099) MAP3K20 (ENSPKIG00000004982) ENSPKIG00000004895 ENSPKIG00000004755 SP3 (ENSPKIG00000004665) OLA1 (ENSPKIG00000004546) sp9 (ENSPKIG00000004479) CIR1 (ENSPKIG00000004454) ENSPKIG00000004428 chrna1 (ENSPKIG00000004406) glb1l (ENSPKIG00000004321) ENSPKIG00000004202 ENSPKIG00000004144 #21 sumo3a (ENSPKIG00000004110) #22 ENSPKIG00000004085 TSPEAR (ENSPKIG00000004043) #24 ENSPKIG00000004005 BMPR2 (ENSPKIG00000003884) ENSPKIG00000003801 ical1 (ENSPKIG00000003716) CARF (ENSPKIG00000003659) nop58 (ENSPKIG00000003585) sumo1 (ENSPKIG00000003552) ENSPKIG00000003510 fzd7a (ENSPKIG00000003493) cdk15 (ENSPKIG00000003440) MPP4 (ENSPKIG00000003356) TMEM237 (ENSPKIG00000003302) ABI2 (ENSPKIG00000003196) Osteoglossocephalai ANCESTRAL SPECIES 56 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000162528 ENSGT00940000161051.a.a.a.a.a ENSGT00940000161051.a.a.a.a.b ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909 ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v #22 ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000158193 #23 ENSGT00510000047718.d #24 ENSGT00510000047718.c #24 ENSGT00940000157267 Clupeocephala ANCESTRAL SPECIES 3 ENSGT00940000157608 ENSGT00940000164537 ENSGT00940000158179.a ENSGT00390000010672 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000158193 #23 ENSGT00510000047718.d #24 ENSGT00980000199010 ENSGT00940000156449.b.b ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000164964.b ENSGT00940000156449.a ENSGT00950000183046.a.a.fb ENSGT00390000013916 ENSGT00940000158239.a.a ENSGT00940000155861.C.f ENSGT00940000156444.d ENSGT00390000005159.i ENSGT00940000156089.e.b Otomorpha ANCESTRAL SPECIES 516 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000158193 #23 ENSGT00510000047718.c #24 ENSGT00940000157267 Clupeiformes ANCESTRAL SPECIES 518 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00940000168354.d ENSGT00950000182895.a.b.u.b #22 ENSGT00940000158193 #23 ENSGT00510000047718.c #24 ENSGT00940000157267 Denticle herring MODERN SPECIES 6 ENSDCDG00000030685 ENSDCDG00000031874 ENSDCDG00000031931 ENSDCDG00000031933 aamp (ENSDCDG00000031946) rab21 (ENSDCDG00000032083) ENSDCDG00000032150 TRHDE (ENSDCDG00000032943) cpm (ENSDCDG00000032946) srgap1b (ENSDCDG00000032971) kics2 (ENSDCDG00000033648) ENSDCDG00000033651 TSPAN9 (ENSDCDG00000033702) dmtf1 (ENSDCDG00000033705) pttg1ipa (ENSDCDG00000033707) SUMO3 (ENSDCDG00000033709) #22 ube2g2 (ENSDCDG00000033712) #23 TSPEAR (ENSDCDG00000033717) #24 ENSDCDG00000033738 nabp1b (ENSDCDG00000033740) cavin2b (ENSDCDG00000033742) TMEFF2 (ENSDCDG00000033744) vps16 (ENSDCDG00000033751) rgn (ENSDCDG00000033756) zgc:112023 (ENSDCDG00000033760) ENSDCDG00000033765 Otophysi ANCESTRAL SPECIES 44 ENSGT00530000063836.a ENSGT00950000183184.a.a.b ENSGT00390000006826 ENSGT00940000159898 ENSGT00940000165235.a.a ENSGT00940000156186.l.a ENSGT00940000155675.p.b ENSGT00940000168325 ENSGT00950000183140.a.a ENSGT00940000155489.a ENSGT00390000011514 ENSGT00730000110871.a.a.a.b ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000165591.a ENSGT00390000014520.n ENSGT00940000165776 ENSGT01030000234667.a.a.a.a.b ENSGT00940000157883.a.b.f ENSGT00950000182892.a.a.b.e ENSGT00950000182919.C ENSGT00390000001859.f ENSGT00940000157981.a.a.a ENSGT00940000156851.d.c ENSGT00910000144296.d ENSGT00390000004153.d ENSGT00390000000673.a.b ENSGT00940000155099.k.b ENSGT00940000154076.B.b Cyprinoidei ANCESTRAL SPECIES 73 ENSGT00390000014839.b.g ENSGT00940000164909.e.b ENSGT00940000168354.d ENSGT00950000182895.a.b.u.b #22 ENSGT00940000165591.a ENSGT00390000014520.n ENSGT00940000165776 ENSGT01030000234667.a.a.a.a.b ENSGT00940000157883.a.b.f ENSGT00950000182892.a.a.b.e ENSGT00950000182919.C ENSGT00390000001859.f.b ENSGT00940000157981.a.a.a ENSGT00940000156851.d.c ENSGT00910000144296.d ENSGT00390000004153.d ENSGT00390000000673.a.b ENSGT00940000155099.k.b ENSGT00940000154076.B.b.j Zebrafish MODERN SPECIES 24 tmem237a (ENSDARG00000041735) MPP4 (ENSDARG00000058222) ALS2 (ENSDARG00000075111) fzd7a (ENSDARG00000060004) ENSDARG00000019950 fam117bb (ENSDARG00000009839) bmpr2b (ENSDARG00000020057) ENSDARG00000020834 ENSDARG00000058409 ENSDARG00000070011 ENSDARG00000095504 glb1l (ENSDARG00000029955) ENSDARG00000041904 ENSDARG00000074143 pttg1ipb (ENSDARG00000040039) sumo3b (ENSDARG00000035993) #22 TSPEAR (ENSDARG00000089235) #24 tra2b (ENSDARG00000002168) igf2bp2a (ENSDARG00000003421) tmem41aa (ENSDARG00000070028) ehhadh (ENSDARG00000070029) C9H3orf70 (ENSDARG00000061664) nup35 (ENSDARG00000012222) znf804a (ENSDARG00000027079) zc3h15 (ENSDARG00000015889) itgav (ENSDARG00000006314) si:dkey-69o16.5 (ENSDARG00000070057) umps (ENSDARG00000012215) cryba2b (ENSDARG00000041925) fev (ENSDARG00000009242) cdk5r2b (ENSDARG00000078671) Cyprininae ANCESTRAL SPECIES 23 ENSGT00940000155655.A.g ENSGT00940000157230.b.f ENSGT00940000155359.w.b.db ENSGT00530000063836.a.p ENSGT00950000183184.a.a.b.a ENSGT00940000165235.a.a ENSGT00940000156186.l.a.a.a ENSGT00940000168325.b ENSGT00950000183140.a.a.a ENSGT00940000155489.a.a ENSGT00390000011514 ENSGT00730000110871.a.a.a.b.f ENSGT00390000014839.b.h ENSGT00940000164909.e.b.b ENSGT00940000168354.d.a ENSGT00950000182895.a.b.u.b #22 ENSGT00940000165591.a.b ENSGT00390000014520.n.a ENSGT00940000165776.g ENSGT01030000234667.a.a.a.a.b.c ENSGT00940000157883.a.b.f.c.b ENSGT00950000182892.a.a.b.e.b ENSGT00950000182919.C.n ENSGT00390000001859.f.b.b.a ENSGT00940000157981.a.a.a.c.a ENSGT00940000156851.d.c.a ENSGT00940000155557.kc ENSGT00390000004153.d.j ENSGT00390000000673.a.b.e.a ENSGT00940000155099.k.b.c ENSGT00940000154076.B.b.j Cyprininae_a ANCESTRAL SPECIES 13 ENSGT00940000157230.b.e ENSGT00940000155359.w.b.eb ENSGT00530000063836.a.o ENSGT00950000183184.a.a.b.b ENSGT00390000006826.a ENSGT00940000159898.i ENSGT00940000156186.l.a.a.b ENSGT00940000168325.a ENSGT00950000183140.a.a.b ENSGT00940000155489.a.b ENSGT00940000174917 ENSGT00730000110871.a.a.a.b.e ENSGT00390000014839.b.g ENSGT00940000164909.e.b.a ENSGT00940000168354.d.b ENSGT00950000182895.a.b.u.b #22 ENSGT00940000165591.a.a ENSGT00390000014520.n.b ENSGT00940000165776.h ENSGT01030000234667.a.a.a.a.b.d ENSGT00940000157883.a.b.f.c.a ENSGT00950000182892.a.a.b.e.a ENSGT00950000182919.C.m ENSGT00390000001859.f.b.a ENSGT00940000157981.a.a.a.c.b ENSGT00940000156851.d.c.b ENSGT00910000144296.d ENSGT00390000004153.d.i ENSGT00390000000673.a.b.f ENSGT00390000000673.a.b.e.b ENSGT00940000155099.k.b.d Golden-line barbel DUPLICATION Golden-line barbel DUPLICATION Golden-line barbel MODERN SPECIES 33 ENSSGRG00000053994 ENSSGRG00000053991 pttg1ipa (ENSSGRG00000053990) ENSSGRG00000053965 #22 ENSSGRG00000053610 coq7 (ENSSGRG00000053577) notum2 (ENSSGRG00000053576) ccr7 (ENSSGRG00000053575) cycsb (ENSSGRG00000053567) mtx2 (ENSSGRG00000053529) lnpk (ENSSGRG00000053526) atp5mc3b (ENSSGRG00000053499) chrna1 (ENSSGRG00000053498) WIPF1 (ENSSGRG00000053497) GPR155 (ENSSGRG00000053435) ENSSGRG00000053433 SP3 (ENSSGRG00000053432) ENSSGRG00000053431 ENSSGRG00000053429 Golden-line barbel MODERN SPECIES 62 ENSSGRG00000025896 ENSSGRG00000025918 wdsub1 (ENSSGRG00000026505) ENSSGRG00000026512 MARCHF7 (ENSSGRG00000026608) FAM171B (ENSSGRG00000026611) zswim2 (ENSSGRG00000026614) CALCRL (ENSSGRG00000026622) ENSSGRG00000027498 ENSSGRG00000027499 ENSSGRG00000027502 pcnt (ENSSGRG00000027504) ATG9A (ENSSGRG00000027509) ENSSGRG00000027515 pttg1ipa (ENSSGRG00000027520) ENSSGRG00000027521 #22 ENSSGRG00000027600 coq7 (ENSSGRG00000028458) notum2 (ENSSGRG00000028459) ccr7 (ENSSGRG00000028460) cycsb (ENSSGRG00000028463) nfe2l2b (ENSSGRG00000028481) mtx2 (ENSSGRG00000028486) ENSSGRG00000028581 atp5mc3b (ENSSGRG00000028582) chrna1 (ENSSGRG00000028593) GPR155 (ENSSGRG00000028597) ENSSGRG00000028625 ENSSGRG00000028684 ENSSGRG00000028685 ENSSGRG00000028688 Golden-line barbel MODERN SPECIES 219 tmem237a (ENSSGRG00000054344) ENSSGRG00000054343 ALS2 (ENSSGRG00000054333) fzd7a (ENSSGRG00000054326) CARF (ENSSGRG00000054325) fam117bb (ENSSGRG00000054324) bmpr2b (ENSSGRG00000054319) ENSSGRG00000054316 ENSSGRG00000054302 ENSSGRG00000054279 ENSSGRG00000054273 ANKZF1 (ENSSGRG00000054272) glb1l (ENSSGRG00000054217) ENSSGRG00000054205 pttg1ipb (ENSSGRG00000054202) sumo3b (ENSSGRG00000054152) #22 ENSSGRG00000054150 #24 ENSSGRG00000054149 igf2bp2a (ENSSGRG00000053943) tmem41aa (ENSSGRG00000053938) ehhadh (ENSSGRG00000053937) zgc:162707 (ENSSGRG00000053936) Characiphysae ANCESTRAL SPECIES 18 ENSGT00940000155359.w.b.bb ENSGT00530000063836.a ENSGT00950000183184.a.a.b ENSGT00390000006826 ENSGT00940000165235.a.a ENSGT00940000156186.l.a ENSGT00940000155675.p.b ENSGT00940000168325 ENSGT00950000183140.a.a ENSGT00940000155489.a ENSGT00390000011514 ENSGT00730000110871.a.a.a.b ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000165591.a ENSGT00390000014520.n ENSGT00940000165776 ENSGT01030000234667.a.a.a.a.b ENSGT00940000157883.a.b.f ENSGT00950000182892.a.a.b.e ENSGT00950000182919.C ENSGT00390000001859.f ENSGT00940000157981.a.a.a ENSGT00940000156851.d.c ENSGT00910000144296.d ENSGT00390000004153.d ENSGT00390000000673.a.b ENSGT00940000155099.k.b ENSGT00940000154076.B.b Channel catfish MODERN SPECIES 3 march7 (ENSIPUG00000018025) fam171b (ENSIPUG00000018056) zswim2 (ENSIPUG00000018064) calcrl (ENSIPUG00000018077) nmnat1 (ENSIPUG00000018100) gulp1b (ENSIPUG00000018114) ENSIPUG00000018185 ENSIPUG00000018196 ENSIPUG00000018199 ENSIPUG00000018211 zgc:112416 (ENSIPUG00000018260) pcnt (ENSIPUG00000018294) atg9a (ENSIPUG00000018387) ENSIPUG00000018445 pttg1ipa (ENSIPUG00000018580) SUMO3 (ENSIPUG00000018584) #22 ENSIPUG00000018615 COQ7 (ENSIPUG00000018837) notum2 (ENSIPUG00000018885) CCR7 (ENSIPUG00000018909) CYC (ENSIPUG00000018915) mtx2 (ENSIPUG00000018936) lnpk (ENSIPUG00000018992) AT5G3 (ENSIPUG00000019033) chrna1 (ENSIPUG00000019058) WIPF1 (ENSIPUG00000019090) GPR155 (ENSIPUG00000019106) ola1 (ENSIPUG00000019139) ENSIPUG00000019202 ENSIPUG00000019218 ENSIPUG00000019272 Characiphysae_b ANCESTRAL SPECIES 127 ENSGT00940000155359.w.b.bb ENSGT00530000063836.a ENSGT00950000183184.a.a.b ENSGT00390000006826 ENSGT00940000165235.a.a ENSGT00940000156186.l.a ENSGT00940000155675.p.b ENSGT00940000168325 ENSGT00950000183140.a.a ENSGT00940000155489.a ENSGT00390000011514 ENSGT00730000110871.a.a.a.b ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000165591.a ENSGT00390000014520.n ENSGT00940000165776 ENSGT01030000234667.a.a.a.a.b ENSGT00940000157883.a.b.f ENSGT00950000182892.a.a.b.e ENSGT00950000182919.C ENSGT00390000001859.f ENSGT00940000157981.a.a.a ENSGT00940000156851.d.c ENSGT00910000144296.d ENSGT00390000004153.d ENSGT00390000000673.a.b ENSGT00940000155099.k.b ENSGT00940000154076.B.b Characoidei ANCESTRAL SPECIES 124 ENSGT00940000155359.w.b.bb ENSGT00530000063836.a ENSGT00950000183184.a.a.b ENSGT00390000006826 ENSGT00940000165235.a.a ENSGT00940000156186.l.a ENSGT00940000155675.p.b ENSGT00940000168325 ENSGT00950000183140.a.a ENSGT00940000155489.a ENSGT00390000011514 ENSGT00730000110871.a.a.a.b ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000165591.a ENSGT00390000014520.n ENSGT00940000165776 ENSGT01030000234667.a.a.a.a.b ENSGT00940000157883.a.b.f ENSGT00950000182892.a.a.b.e ENSGT00950000182919.C ENSGT00390000001859.f ENSGT00940000157981.a.a.a ENSGT00940000156851.d.c ENSGT00940000155557.kc ENSGT00390000004153.d.g ENSGT00390000000673.a.b ENSGT00940000155099.k.b ENSGT00940000154076.B.b Red-bellied piranha MODERN SPECIES 93 ENSPNAG00000003032 RBM26 (ENSPNAG00000003024) NBEAL1 (ENSPNAG00000013975) ENSPNAG00000002928 TRAK2 (ENSPNAG00000013732) ENSPNAG00000013725 SEMA5B (ENSPNAG00000002901) unc50 (ENSPNAG00000002873) slc25a12 (ENSPNAG00000002858) ENSPNAG00000002847 zgc:112416 (ENSPNAG00000013594) pcnt (ENSPNAG00000002811) atg9a (ENSPNAG00000002672) ENSPNAG00000013229 ENSPNAG00000013064 #21 sumo3b (ENSPNAG00000013056) #22 ENSPNAG00000013036 coq7 (ENSPNAG00000002452) notum2 (ENSPNAG00000005408) ccr7 (ENSPNAG00000002437) cycsb (ENSPNAG00000012874) nfe2l2b (ENSPNAG00000002430) mtx2 (ENSPNAG00000012847) lnpk (ENSPNAG00000012789) atp5mc3b (ENSPNAG00000002387) chrna1 (ENSPNAG00000002374) ENSPNAG00000012709 GPR155 (ENSPNAG00000012683) ola1 (ENSPNAG00000012638) ENSPNAG00000002316 ENSPNAG00000012566 Electric eel MODERN SPECIES 314 ENSEEEG00000021996 ENSEEEG00000021995 ENSEEEG00000021994 zswim2 (ENSEEEG00000021992) ENSEEEG00000021991 GULP1 (ENSEEEG00000021990) ENSEEEG00000021989 ENSEEEG00000021988 ENSEEEG00000021987 atg9a (ENSEEEG00000021984) ENSEEEG00000021983 ENSEEEG00000021981 ENSEEEG00000021978 #21 SUMO3 (ENSEEEG00000021954) #22 ENSEEEG00000021936 coq7 (ENSEEEG00000021928) notum2 (ENSEEEG00000021925) ccr7 (ENSEEEG00000021923) cycsb (ENSEEEG00000021918) ENSEEEG00000021917 mtx2 (ENSEEEG00000021916) lnpk (ENSEEEG00000021914) atp5mc3b (ENSEEEG00000021912) chrna1 (ENSEEEG00000021911) WIPF1 (ENSEEEG00000021910) GPR155 (ENSEEEG00000021909) ola1 (ENSEEEG00000021904) ENSEEEG00000021898 ENSEEEG00000021897 Euteleosteomorpha ANCESTRAL SPECIES 6 ENSGT00940000157608 ENSGT00940000164537 ENSGT00940000158179.a ENSGT00390000010672 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000158193 #23 ENSGT00510000047718.d #24 ENSGT00980000199010 ENSGT00940000156449.a ENSGT00950000183046.a.a.fb ENSGT00390000013916 ENSGT00940000154319 ENSGT00940000158239.a.b ENSGT00940000159606 ENSGT00940000155861.C.e ENSGT00940000156444.c ENSGT00390000005159.j ENSGT00500000044939 ENSGT00940000176171 ENSGT00940000156089.e.a Protacanthopterygii ANCESTRAL SPECIES 99 ENSGT00940000157608 ENSGT00940000164537 ENSGT00940000158179.a ENSGT00390000010672 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412.b ENSGT00940000154913.p.a ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000161051.a.a.a.a.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000158193 #23 ENSGT00510000047718.d #24 ENSGT00980000199010 ENSGT00940000156449.a ENSGT00950000183046.a.a.fb ENSGT00390000013916 ENSGT00940000158239.a.b.f ENSGT00940000155861.C.f ENSGT00940000156444.d ENSGT00390000005159.i ENSGT00940000156089.f ENSGT00940000156552.c.a ENSGT00530000063873.B ENSGT00940000159069 ENSGT00940000156160.b.b Northern pike MODERN SPECIES 19 ENSELUG00000010440 nme9 (ENSELUG00000010559) ENSELUG00000010491 ENSELUG00000029425 zgc:162707 (ENSELUG00000025175) ehhadh (ENSELUG00000010632) tmem41aa (ENSELUG00000010646) igf2bp2a (ENSELUG00000010676) tra2b (ENSELUG00000010705) ENSELUG00000010731 ENSELUG00000010749 ANKZF1 (ENSELUG00000010785) glb1l (ENSELUG00000010822) ENSELUG00000010966 ENSELUG00000011005 #21 sumo3b (ENSELUG00000011027) #22 ube2g2 (ENSELUG00000011061) #23 TSPEAR (ENSELUG00000011087) #24 ENSELUG00000034671 bmpr2b (ENSELUG00000000389) fam117bb (ENSELUG00000011120) ENSELUG00000011133 ENSELUG00000033217 ENSELUG00000029802 fzd7a (ENSELUG00000011210) ENSELUG00000011231 ENSELUG00000011283 ALS2 (ENSELUG00000011306) ENSELUG00000026273 ENSELUG00000027269 ENSELUG00000011387 Salmoninae ANCESTRAL SPECIES 304 ENSGT00390000015276 ENSGT00940000155682.g.a ENSGT00940000158179.b ENSGT00940000157608.c ENSGT00940000164537 ENSGT00940000158179.a ENSGT00390000010672 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000161051.a.a.a.a.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00950000182895.a.b.u.b #22 ENSGT00940000158193 #23 ENSGT00510000047718.d #24 ENSGT00940000156449.a.c ENSGT00950000183046.a.a.fb ENSGT00390000013916 ENSGT00940000154319.f ENSGT00940000158239.a.b.f ENSGT00940000155861.C.f ENSGT00940000156444.d ENSGT00390000005159.i ENSGT00940000156552.c.a.f Salmoninae_a ANCESTRAL SPECIES ENSGT00390000015276 ENSGT00940000155682.g.a ENSGT00940000158179.b ENSGT00940000157608.c ENSGT00940000164537 ENSGT00940000158179.a ENSGT00390000010672 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000161051.a.a.a.a.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a.n ENSGT00950000182895.a.b.u.b #22 ENSGT00940000158193 #23 ENSGT00510000047718.d #24 ENSGT00940000156449.a.c.b ENSGT00950000183046.a.a.fb ENSGT00390000013916 ENSGT00940000154319.f ENSGT00940000158239.a.b.f ENSGT00940000155861.C.f ENSGT00940000156444.d ENSGT00390000005159.i ENSGT00940000156552.c.a.f ENSGT00940000178309.b ENSGT00530000063873.B.h ENSGT00940000159069 ENSGT00950000183019.f.b.b.c Salmo ANCESTRAL SPECIES 10 ENSGT00940000158216 ENSGT00940000159292.l ENSGT00390000015276 ENSGT00940000155682.g.a ENSGT00940000158179.b ENSGT00940000157608.c ENSGT00940000164537 ENSGT00390000006618.j ENSGT00940000157516 ENSGT00940000163412.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000161051.a.a.a.a.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a.n ENSGT00950000182895.a.b.u.b #22 ENSGT00940000158193 #23 ENSGT00510000047718.d #24 ENSGT00940000156449.a.c.b ENSGT00950000183046.a.a.fb ENSGT00390000013916 ENSGT00940000154319.f ENSGT00940000158239.a.b.f ENSGT00940000155861.C.f ENSGT00940000156444.d ENSGT00390000005159.i ENSGT00940000156552.c.a.f ENSGT00530000063873.B.h ENSGT00940000159069 ENSGT00950000183019.f.b.b.c ENSGT00940000155126.s.b Atlantic salmon DUPLICATION Atlantic salmon MODERN SPECIES 22 ENSSSAG00000046452 trpa1a (ENSSSAG00000044167) dnjb6 (ENSSSAG00000044091) shhb (ENSSSAG00000101828) ENSSSAG00000044065 cnpy1 (ENSSSAG00000044032) en2b (ENSSSAG00000100691) paxip1 (ENSSSAG00000043728) ENSSSAG00000108854 ptf1a (ENSSSAG00000043684) dlgap1a (ENSSSAG00000042875) cahz (ENSSSAG00000116739) CDH18 (ENSSSAG00000042660) ENSSSAG00000042586 cdh6 (ENSSSAG00000037381) ENSSSAG00000094179 #22 zgc:56556 (ENSSSAG00000035430) mc4r (ENSSSAG00000035179) ENSSSAG00000035069 ENSSSAG00000031405 xkr4 (ENSSSAG00000031199) tmem68 (ENSSSAG00000031121) ENSSSAG00000031025 lyn (ENSSSAG00000015493) dcup (ENSSSAG00000010135) zswim5 (ENSSSAG00000009882) selenop2 (ENSSSAG00000009868) si:ch73-382f3.1 (ENSSSAG00000106680) toe1 (ENSSSAG00000080626) tmem53 (ENSSSAG00000080607) tesk2 (ENSSSAG00000080617) Atlantic salmon MODERN SPECIES 13 nme9 (ENSSSAG00000055739) zgc:162707 (ENSSSAG00000093489) ehhadh (ENSSSAG00000055724) tmem41aa (ENSSSAG00000116676) ENSSSAG00000111091 ENSSSAG00000107082 ENSSSAG00000005556 ENSSSAG00000052812 glb1l (ENSSSAG00000051577) ENSSSAG00000098086 ENSSSAG00000021713 ENSSSAG00000050303 ENSSSAG00000064688 ENSSSAG00000002802 ENSSSAG00000120441 SUMO3 (ENSSSAG00000084800) #22 ube2g2 (ENSSSAG00000051507) #23 TSPEAR (ENSSSAG00000050067) #24 ENSSSAG00000105259 ENSSSAG00000117001 ENSSSAG00000050202 ENSSSAG00000050171 ENSSSAG00000050144 ENSSSAG00000088870 ENSSSAG00000096274 ENSSSAG00000049766 ENSSSAG00000091966 ENSSSAG00000080914 ENSSSAG00000080894 ENSSSAG00000092198 ENSSSAG00000114673 Oncorhynchus ANCESTRAL SPECIES 170 ENSGT00940000164909.e.a.n ENSGT00950000182895.a.b.u.b #22 ENSGT00980000199010 ENSGT00940000156449.a.d ENSGT00970000197040 ENSGT00940000163520.A.a.a.b ENSGT00940000156089.f ENSGT00940000156552.c.a.e ENSGT00530000063873.B.g Rainbow trout DUPLICATION Rainbow trout MODERN SPECIES 21 ENSOMYG00000064435 ENSOMYG00000070267 ENSOMYG00000051139 ENSOMYG00000069255 ENSOMYG00000075218 xrcc5 (ENSOMYG00000001629) ENSOMYG00000070173 ENSOMYG00000059990 ENSOMYG00000077002 ENSOMYG00000069980 ENSOMYG00000062590 SUMO3 (ENSOMYG00000057887) #22 ENSOMYG00000001527 ENSOMYG00000063418 ENSOMYG00000076555 ENSOMYG00000015001 abi2a (ENSOMYG00000071875) ENSOMYG00000071606 ENSOMYG00000001378 ENSOMYG00000056154 ENSOMYG00000074984 ENSOMYG00000068449 ENSOMYG00000076231 ENSOMYG00000054031 ENSOMYG00000059150 ENSOMYG00000069527 ENSOMYG00000051460 Rainbow trout MODERN SPECIES 14 MARCHF4 (ENSOMYG00000037882) ENSOMYG00000037908 nme9 (ENSOMYG00000065544) zgc:162707 (ENSOMYG00000037937) ENSOMYG00000037959 tmem41aa (ENSOMYG00000037320) ENSOMYG00000076103 ENSOMYG00000037308 ENSOMYG00000056838 ENSOMYG00000054236 glb1l (ENSOMYG00000050634) ENSOMYG00000065556 ENSOMYG00000069159 ENSOMYG00000063985 ENSOMYG00000077747 SUMO3 (ENSOMYG00000037253) #22 ENSOMYG00000058894 #23 TSPEAR (ENSOMYG00000037235) #24 ENSOMYG00000074538 bmpr2b (ENSOMYG00000049256) ENSOMYG00000063219 ENSOMYG00000073277 fam117bb (ENSOMYG00000056573) ENSOMYG00000049726 ENSOMYG00000076869 ENSOMYG00000056834 ENSOMYG00000056170 ENSOMYG00000058730 sumo-1 (ENSOMYG00000025363) fzd7a (ENSOMYG00000026160) ALS2 (ENSOMYG00000070422) Oncorhynchus_a ANCESTRAL SPECIES 121 ENSGT00940000157608.c ENSGT00940000157563 ENSGT00940000154200.A.b.b ENSGT00940000160645.o.z ENSGT00940000156083.j ENSGT00940000158179.a ENSGT00390000010672 ENSGT00390000006618 ENSGT00940000157516.h ENSGT00940000163412.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000161051.a.a.a.a.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a.n ENSGT00950000182895.a.b.u.b #22 ENSGT00980000199010 ENSGT00940000156449.a.d ENSGT00940000163520.A.a.a.b ENSGT00940000156089.f ENSGT00940000156552.c.a.e ENSGT00530000063873.B.g ENSGT00940000160059.a.b.b.a ENSGT00940000166348 Chinook salmon MODERN SPECIES 244 sumo3b (ENSOTSG00005043280) #22 ube2g2 (ENSOTSG00005043287) #23 PSTK (ENSOTSG00005043289) IKZF5 (ENSOTSG00005043291) HMX3 (ENSOTSG00005043293) HMX2 (ENSOTSG00005043295) elocb (ENSOTSG00005043298) ube2wa (ENSOTSG00005043300) runx2b (ENSOTSG00005043321) Coho salmon DUPLICATION Coho salmon MODERN SPECIES 18 TMEM169 (ENSOKIG00005045376) COL6A2 (ENSOKIG00005045365) MARCHF4 (ENSOKIG00005045359) SMARCAL1 (ENSOKIG00005044589) nme9 (ENSOKIG00005044513) ENSOKIG00005044476 zgc:162707 (ENSOKIG00005044469) ehhadh (ENSOKIG00005044438) tmem41aa (ENSOKIG00005044428) ENSOKIG00005044419 ENSOKIG00005044414 ENSOKIG00005044402 glb1l (ENSOKIG00005042882) ENSOKIG00005042720 ENSOKIG00005041828 sumo3b (ENSOKIG00005041723) #22 ube2g2 (ENSOKIG00005041702) #23 TSPEAR (ENSOKIG00005041677) #24 ENSOKIG00005041664 bmpr2b (ENSOKIG00005041479) ENSOKIG00005041440 ENSOKIG00005041403 SUMO1 (ENSOKIG00005041379) ENSOKIG00005041343 fzd7a (ENSOKIG00005041315) ALS2 (ENSOKIG00005040413) MPP4 (ENSOKIG00005040094) tmem237a (ENSOKIG00005040010) RAPH1 (ENSOKIG00005039928) ENSOKIG00005039897 FER1L6 (ENSOKIG00005039679) Coho salmon MODERN SPECIES 11 ENSOKIG00005001090 zc3h15 (ENSOKIG00005001097) itgav (ENSOKIG00005001157) si:dkey-69o16.5 (ENSOKIG00005001266) ihha (ENSOKIG00005001272) ENSOKIG00005001279 BIN1 (ENSOKIG00005001312) TMEM198 (ENSOKIG00005001339) desma (ENSOKIG00005001348) ENSOKIG00005001361 ptprna (ENSOKIG00005001369) ENSOKIG00005001384 tuba8l5 (ENSOKIG00005001396) ENSOKIG00005001417 ENSOKIG00005001444 ENSOKIG00005001503 #22 ENSOKIG00005001509 ENSOKIG00005001511 BMPR2 (ENSOKIG00005001539) ENSOKIG00005001665 ENSOKIG00005001666 ENSOKIG00005001669 RAPH1 (ENSOKIG00005001687) CTLA4 (ENSOKIG00005001718) ENSOKIG00005001725 ABCB6 (ENSOKIG00005001749) mnx2a (ENSOKIG00005001823) ENSOKIG00005001828 ENSOKIG00005001842 ENSOKIG00005001848 ENSOKIG00005001852 Acanthomorphata ANCESTRAL SPECIES 5 ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00970000197261 ENSGT00940000170370 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000160160 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A ENSGT00940000155773.b Euacanthomorphacea ANCESTRAL SPECIES 15 ENSGT00940000155682.g.a ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241 ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000160160 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 Percomorphaceae ANCESTRAL SPECIES 34 ENSGT00940000155682.g.a ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241 ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000160160 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 Percomorphaceae_B ANCESTRAL SPECIES 17 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000177394 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241 ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A Ovalentaria ANCESTRAL SPECIES 14 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000177394 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241.r ENSGT00650000094711 ENSGT00940000159241.q.a ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 Ovalentaria_B ANCESTRAL SPECIES 18 ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000011514 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT00990000204856 ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00530000063883 ENSGT00940000154800.k.a Pomacentridae ANCESTRAL SPECIES 17 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000177394 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913.q ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00950000182895.a.b.u.a #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241.q.b ENSGT00940000159241.q.a ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a Pomacentridae_A ANCESTRAL SPECIES 14 ENSGT01030000235116 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913.q ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00950000182895.a.b.u.a #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241.q.b ENSGT00940000159241.q.a ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a Spiny chromis MODERN SPECIES 434 ENSAPOG00000023649 ola1 (ENSAPOG00000023705) TRA2B (ENSAPOG00000023727) ENSAPOG00000023764 pcnt (ENSAPOG00000000769) zgc:112416 (ENSAPOG00000003258) atg9a (ENSAPOG00000003356) ENSAPOG00000003499 ENSAPOG00000003531 #21 sumo3b (ENSAPOG00000003545) #22 TSPEAR (ENSAPOG00000003556) #24 ENSAPOG00000003564 fabp7a (ENSAPOG00000003576) ENSAPOG00000003598 ENSAPOG00000003620 fyna (ENSAPOG00000003674) marcksb (ENSAPOG00000003694) col10a1a (ENSAPOG00000003702) ENSAPOG00000003711 fhl5 (ENSAPOG00000003721) fut9a (ENSAPOG00000003732) manea (ENSAPOG00000003743) ppp1cb (ENSAPOG00000003782) ENSAPOG00000003815 ypel5 (ENSAPOG00000003833) Amphiprion ANCESTRAL SPECIES 8 ENSGT01030000235116 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913.q ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00940000159241.q.a ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A ENSGT00940000155773.b Clown anemonefish MODERN SPECIES 1354 gfod2 (ENSAOCG00000016861) thap11 (ENSAOCG00000016876) nrn1lb (ENSAOCG00000016907) SLC38A8 (ENSAOCG00000017020) cmtr2 (ENSAOCG00000017042) calb2b (ENSAOCG00000017310) ENSAOCG00000017362 ENSAOCG00000017371 #21 ENSAOCG00000017387 #22 FMNL2 (ENSAOCG00000017512) prpf40a (ENSAOCG00000017649) rprmb (ENSAOCG00000017681) GALNT13 (ENSAOCG00000017736) KCNJ3 (ENSAOCG00000017746) nr4a2a (ENSAOCG00000017758) ENSAOCG00000017767 GALNT5 (ENSAOCG00000017892) CYTIP (ENSAOCG00000017928) ACVR1C (ENSAOCG00000017979) Orange clownfish MODERN SPECIES 3 ENSAPEG00000015813 MARCHF4 (ENSAPEG00000015828) SMARCAL1 (ENSAPEG00000015861) nme9 (ENSAPEG00000015896) zgc:162707 (ENSAPEG00000015979) ehhadh (ENSAPEG00000015995) tmem41aa (ENSAPEG00000016010) igf2bp2a (ENSAPEG00000016037) tra2b (ENSAPEG00000016141) ENSAPEG00000016161 ENSAPEG00000016190 ENSAPEG00000016246 glb1l (ENSAPEG00000016270) ENSAPEG00000016354 ENSAPEG00000016514 #21 ENSAPEG00000016551 #22 FMNL2 (ENSAPEG00000016594) prpf40a (ENSAPEG00000016745) rprmb (ENSAPEG00000016840) GALNT13 (ENSAPEG00000016860) KCNJ3 (ENSAPEG00000016935) nr4a2a (ENSAPEG00000016964) ENSAPEG00000016984 ENSAPEG00000017009 CYTIP (ENSAPEG00000017018) ACVR1C (ENSAPEG00000017055) ENSAPEG00000017094 ENSAPEG00000017140 upp2 (ENSAPEG00000017167) ENSAPEG00000017203 PKP4 (ENSAPEG00000017310) Cichlidae ANCESTRAL SPECIES 22 ENSGT00390000012355.A.b ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT00990000204856 ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a.h ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00940000154800.k.a ENSGT00950000182836.a Midas cichlid MODERN SPECIES 231 ENSACIG00000017202 ENSACIG00000017088 d2hgdh (ENSACIG00000017057) acvr1l (ENSACIG00000016967) otomp (ENSACIG00000016937) hs6st1b (ENSACIG00000016921) uggt1 (ENSACIG00000016835) ENSACIG00000016803 ola1 (ENSACIG00000016766) TRA2B (ENSACIG00000016739) ENSACIG00000016713 pcnt (ENSACIG00000016414) ENSACIG00000016378 atg9a (ENSACIG00000016340) ENSACIG00000016252 sumo3b (ENSACIG00000016237) #22 TSPEAR (ENSACIG00000016211) #24 ENSACIG00000016148 fabp7a (ENSACIG00000015837) ENSACIG00000015805 fyna (ENSACIG00000015783) marcksb (ENSACIG00000015747) col10a1a (ENSACIG00000015731) ENSACIG00000015693 fhl5 (ENSACIG00000015671) fut9a (ENSACIG00000015654) manea (ENSACIG00000015639) ppp1cb (ENSACIG00000015612) ENSACIG00000015601 ypel5 (ENSACIG00000015593) lclat1 (ENSACIG00000015578) Pseudocrenilabrinae ANCESTRAL SPECIES 8 ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT01100000264078.a.a ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT00990000204856 ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a.h ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00940000154800.k.a ENSGT00950000182836.a Pseudocrenilabrinae_A ANCESTRAL SPECIES 6 ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT01100000264078.a.a ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT00990000204856 ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a.h ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00940000154800.k.a ENSGT00950000182836.a Lyretail cichlid MODERN SPECIES 346 ENSNBRG00000022579 ENSNBRG00000022594 acvr1l (ENSNBRG00000022614) otomp (ENSNBRG00000022622) ENSNBRG00000022635 hs6st1b (ENSNBRG00000022646) uggt1 (ENSNBRG00000022667) ENSNBRG00000022721 ola1 (ENSNBRG00000022738) TRA2B (ENSNBRG00000022760) ENSNBRG00000022774 pcnt (ENSNBRG00000022805) atg9a (ENSNBRG00000022936) ENSNBRG00000022997 ENSNBRG00000023039 #21 sumo3b (ENSNBRG00000023058) #22 TSPEAR (ENSNBRG00000023075) #24 ENSNBRG00000023113 fabp7a (ENSNBRG00000023141) ENSNBRG00000023148 ENSNBRG00000023158 ENSNBRG00000023163 fyna (ENSNBRG00000023178) marcksb (ENSNBRG00000023189) col10a1a (ENSNBRG00000023211) ENSNBRG00000023221 fhl5 (ENSNBRG00000023237) fut9a (ENSNBRG00000023295) fut9a (ENSNBRG00000023391) manea (ENSNBRG00000023401) ppp1cb (ENSNBRG00000023411) Haplochromini ANCESTRAL SPECIES 7 ENSGT00390000012355.A.b ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT00990000204856 ENSGT00940000158431.a.a.a.a.a.b.b.c.b ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a.h ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00940000154800.k.a Burton s mouthbrooder DUPLICATION Burton s mouthbrooder MODERN SPECIES 438 SSBP4 (ENSHBUG00000005735) ENSHBUG00000005755 ENSHBUG00000005799 acvr1l (ENSHBUG00000005813) otomp (ENSHBUG00000005856) hs6st1b (ENSHBUG00000005898) uggt1 (ENSHBUG00000005999) SP3 (ENSHBUG00000006036) ola1 (ENSHBUG00000006078) TRA2B (ENSHBUG00000006118) ENSHBUG00000006139 pcnt (ENSHBUG00000006340) atg9a (ENSHBUG00000006428) ENSHBUG00000006551 ENSHBUG00000006581 #21 ENSHBUG00000006596 #22 TSPEAR (ENSHBUG00000006725) #24 ENSHBUG00000006829 fabp7a (ENSHBUG00000006848) ENSHBUG00000006853 ENSHBUG00000006865 fyna (ENSHBUG00000006907) marcksb (ENSHBUG00000006933) col10a1a (ENSHBUG00000006937) fhl5 (ENSHBUG00000006967) ENSHBUG00000006983 fut9a (ENSHBUG00000007402) fut9a (ENSHBUG00000007442) manea (ENSHBUG00000007449) ppp1cb (ENSHBUG00000007479) ypel5 (ENSHBUG00000007493) Burton s mouthbrooder MODERN SPECIES 292 ENSHBUG00000002949 MARCHF4 (ENSHBUG00000000068) SMARCAL1 (ENSHBUG00000002973) nme9 (ENSHBUG00000003004) zgc:162707 (ENSHBUG00000003020) ehhadh (ENSHBUG00000003028) tmem41aa (ENSHBUG00000003047) igf2bp2a (ENSHBUG00000003126) tra2b (ENSHBUG00000003145) ENSHBUG00000003161 ENSHBUG00000003190 ANKZF1 (ENSHBUG00000003208) glb1l (ENSHBUG00000003243) ENSHBUG00000003332 ENSHBUG00000003346 #21 sumo3b (ENSHBUG00000003354) #22 FMNL2 (ENSHBUG00000003572) prpf40a (ENSHBUG00000003620) rprmb (ENSHBUG00000003639) GALNT13 (ENSHBUG00000003682) KCNJ3 (ENSHBUG00000003700) nr4a2a (ENSHBUG00000003713) GALNT5 (ENSHBUG00000003828) CYTIP (ENSHBUG00000003859) ACVR1C (ENSHBUG00000003896) ENSHBUG00000003930 upp2 (ENSHBUG00000003922) ENSHBUG00000004035 PKP4 (ENSHBUG00000004178) dap1b (ENSHBUG00000004199) ENSHBUG00000004409 Haplochromini_A ANCESTRAL SPECIES 7 ENSGT00390000012355.A.b ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT00990000204856 ENSGT00940000158431.a.a.a.a.a.b.b.c.b ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a.h ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00940000154800.k.a Haplochromini_B ANCESTRAL SPECIES 13 ENSGT00390000012355.A.b ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT00990000204856 ENSGT00940000158431.a.a.a.a.a.b.b.c.b ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a.h ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00940000154800.k.a Zebra mbuna MODERN SPECIES 1101 ENSMZEG00005000836 ENSMZEG00005000851 d2hgdh (ENSMZEG00005000872) acvr1l (ENSMZEG00005000913) otomp (ENSMZEG00005000963) hs6st1b (ENSMZEG00005000997) uggt1 (ENSMZEG00005001047) ENSMZEG00005001190 ola1 (ENSMZEG00005001203) TRA2B (ENSMZEG00005001232) ENSMZEG00005001241 pcnt (ENSMZEG00005001272) atg9a (ENSMZEG00005001449) ENSMZEG00005001497 ENSMZEG00005001609 #21 sumo3b (ENSMZEG00005001623) #22 TSPEAR (ENSMZEG00005001651) #24 ENSMZEG00005001723 fabp7a (ENSMZEG00005001820) ENSMZEG00005001830 ENSMZEG00005001839 ENSMZEG00005001857 fyna (ENSMZEG00005001875) marcksb (ENSMZEG00005001901) col10a1a (ENSMZEG00005001936) ENSMZEG00005001944 fhl5 (ENSMZEG00005001974) fut9a (ENSMZEG00005001980) fut9a (ENSMZEG00005001994) manea (ENSMZEG00005001998) ppp1cb (ENSMZEG00005002009) Eastern happy MODERN SPECIES 10 ENSACLG00000010684 ENSACLG00000010689 d2hgdh (ENSACLG00000010697) acvr1l (ENSACLG00000010712) otomp (ENSACLG00000010733) hs6st1b (ENSACLG00000010812) uggt1 (ENSACLG00000010862) ENSACLG00000011044 ola1 (ENSACLG00000011067) TRA2B (ENSACLG00000011095) ENSACLG00000011110 pcnt (ENSACLG00000011373) atg9a (ENSACLG00000011454) ENSACLG00000011479 ENSACLG00000011512 #21 sumo3b (ENSACLG00000011519) #22 TSPEAR (ENSACLG00000011526) #24 ENSACLG00000011534 fabp7a (ENSACLG00000011625) ENSACLG00000011640 ENSACLG00000011645 ENSACLG00000011656 fyna (ENSACLG00000011671) marcksb (ENSACLG00000011685) col10a1a (ENSACLG00000011735) ENSACLG00000011744 fhl5 (ENSACLG00000011881) fut9a (ENSACLG00000011904) fut9a (ENSACLG00000011960) manea (ENSACLG00000011971) ppp1cb (ENSACLG00000011991) P. nyererei DUPLICATION P. nyererei MODERN SPECIES 305 ENSPNYG00000014566 ENSPNYG00000014576 d2hgdh (ENSPNYG00000014600) acvr1l (ENSPNYG00000014634) otomp (ENSPNYG00000014659) hs6st1b (ENSPNYG00000014686) uggt1 (ENSPNYG00000014757) ENSPNYG00000014919 ola1 (ENSPNYG00000014943) TRA2B (ENSPNYG00000014955) ENSPNYG00000014980 pcnt (ENSPNYG00000015024) atg9a (ENSPNYG00000015233) ENSPNYG00000015305 ENSPNYG00000015393 #21 sumo3b (ENSPNYG00000015401) #22 TSPEAR (ENSPNYG00000015434) #24 ENSPNYG00000015549 fabp7a (ENSPNYG00000015683) ENSPNYG00000016064 ENSPNYG00000016076 fyna (ENSPNYG00000016098) marcksb (ENSPNYG00000016118) col10a1a (ENSPNYG00000016146) ENSPNYG00000016160 fhl5 (ENSPNYG00000016197) fut9a (ENSPNYG00000016223) manea (ENSPNYG00000016243) ppp1cb (ENSPNYG00000016253) ENSPNYG00000016290 ypel5 (ENSPNYG00000016313) P. nyererei MODERN SPECIES 304 MARCHF4 (ENSPNYG00000000999) SMARCAL1 (ENSPNYG00000001058) ENSPNYG00000001099 nme9 (ENSPNYG00000001110) zgc:162707 (ENSPNYG00000001153) ehhadh (ENSPNYG00000001157) ENSPNYG00000001166 igf2bp2a (ENSPNYG00000001187) tra2b (ENSPNYG00000001238) ENSPNYG00000001248 ENSPNYG00000001277 ANKZF1 (ENSPNYG00000001310) glb1l (ENSPNYG00000001327) ENSPNYG00000001380 ENSPNYG00000001489 #21 ENSPNYG00000001495 #22 FMNL2 (ENSPNYG00000001529) prpf40a (ENSPNYG00000001659) rprmb (ENSPNYG00000001860) GALNT13 (ENSPNYG00000001888) KCNJ3 (ENSPNYG00000001943) nr4a2a (ENSPNYG00000001957) GALNT5 (ENSPNYG00000001992) CYTIP (ENSPNYG00000002106) ACVR1C (ENSPNYG00000002117) ACVR1 (ENSPNYG00000002148) ENSPNYG00000002186 upp2 (ENSPNYG00000002209) CCDC148 (ENSPNYG00000002242) PKP4 (ENSPNYG00000002278) dap1b (ENSPNYG00000002343) Nile tilapia DUPLICATION Nile tilapia MODERN SPECIES 10 ENSONIG00000031220 ENSONIG00000001226 d2hgdh (ENSONIG00000001232) acvr1l (ENSONIG00000001235) otomp (ENSONIG00000001240) ENSONIG00000034367 hs6st1b (ENSONIG00000001241) uggt1 (ENSONIG00000001242) ENSONIG00000001262 ola1 (ENSONIG00000001265) TRA2B (ENSONIG00000001274) ENSONIG00000034409 ENSONIG00000039936 atg9a (ENSONIG00000001285) ENSONIG00000001298 ENSONIG00000032503 #22 TSPEAR (ENSONIG00000001315) #24 ENSONIG00000001318 fabp7a (ENSONIG00000001326) ENSONIG00000040058 ENSONIG00000030616 fyna (ENSONIG00000001335) marcksb (ENSONIG00000042894) col10a1a (ENSONIG00000001340) ENSONIG00000001342 fhl5 (ENSONIG00000001347) fut9a (ENSONIG00000040651) fut9a (ENSONIG00000031215) manea (ENSONIG00000001351) ppp1cb (ENSONIG00000001356) ypel5 (ENSONIG00000001358) Nile tilapia MODERN SPECIES 7 ENSONIG00000036866 MARCHF4 (ENSONIG00000009038) SMARCAL1 (ENSONIG00000009036) nme9 (ENSONIG00000009034) zgc:162707 (ENSONIG00000029797) ehhadh (ENSONIG00000036880) tmem41aa (ENSONIG00000040431) igf2bp2a (ENSONIG00000009029) tra2b (ENSONIG00000009025) ENSONIG00000009023 ENSONIG00000009020 ANKZF1 (ENSONIG00000009018) glb1l (ENSONIG00000009015) ENSONIG00000009002 pttg1ipb (ENSONIG00000008999) sumo3b (ENSONIG00000001312) #22 FMNL2 (ENSONIG00000008993) prpf40a (ENSONIG00000008986) rprmb (ENSONIG00000021106) GALNT13 (ENSONIG00000008980) KCNJ3 (ENSONIG00000040559) nr4a2a (ENSONIG00000008976) ENSONIG00000039674 GALNT5 (ENSONIG00000008975) CYTIP (ENSONIG00000008973) ACVR1C (ENSONIG00000008966) ENSONIG00000008955 ENSONIG00000042262 upp2 (ENSONIG00000008958) PKP4 (ENSONIG00000008949) dapl1 (ENSONIG00000035634) Atherinomorphae ANCESTRAL SPECIES 11 ENSGT00390000012355.A.b ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT01090000260229 ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a.f ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00530000063883 ENSGT00940000154800.k.a ENSGT00950000182836.a Cyprinodontiformes ANCESTRAL SPECIES 21 ENSGT00390000012355.A.b ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT01090000260229 ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a.f ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00530000063883 ENSGT00940000154800.k.a ENSGT00950000182836.a ENSGT00390000009189 Aplocheiloidei ANCESTRAL SPECIES 6 ENSGT00940000155682.g.a ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00940000159241.q.b ENSGT00940000159241.r ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT01030000235131 ENSGT00940000161094 ENSGT00940000153988.A ENSGT00940000155773.b Mangrove rivulus DUPLICATION Mangrove rivulus MODERN SPECIES 78 COL6A2 (ENSKMAG00000011962) MARCHF4 (ENSKMAG00000012001) SMARCAL1 (ENSKMAG00000012023) nme9 (ENSKMAG00000012056) zgc:162707 (ENSKMAG00000012092) ehhadh (ENSKMAG00000012099) tmem41aa (ENSKMAG00000012117) igf2bp2a (ENSKMAG00000012177) tra2b (ENSKMAG00000012273) ENSKMAG00000012295 ENSKMAG00000012311 ANKZF1 (ENSKMAG00000012399) glb1l (ENSKMAG00000012339) ENSKMAG00000012478 ENSKMAG00000012654 #21 ENSKMAG00000012668 #22 FMNL2 (ENSKMAG00000012719) prpf40a (ENSKMAG00000012973) rprmb (ENSKMAG00000013018) GALNT13 (ENSKMAG00000013059) KCNJ3 (ENSKMAG00000013136) nr4a2a (ENSKMAG00000013152) ENSKMAG00000013177 ENSKMAG00000013184 CYTIP (ENSKMAG00000013205) ACVR1C (ENSKMAG00000013222) ENSKMAG00000013267 ENSKMAG00000013309 upp2 (ENSKMAG00000013333) CCDC148 (ENSKMAG00000013353) PKP4 (ENSKMAG00000013437) Mangrove rivulus MODERN SPECIES 1 ENSKMAG00000012923 ELL (ENSKMAG00000012864) d2hgdh (ENSKMAG00000012828) acvr1l (ENSKMAG00000012798) otomp (ENSKMAG00000012763) hs6st1b (ENSKMAG00000012735) uggt1 (ENSKMAG00000012658) ENSKMAG00000012621 ola1 (ENSKMAG00000012576) TRA2B (ENSKMAG00000012538) pcnt (ENSKMAG00000012283) atg9a (ENSKMAG00000012147) ENSKMAG00000012112 ENSKMAG00000012048 ENSKMAG00000012027 #21 sumo3b (ENSKMAG00000012006) #22 TSPEAR (ENSKMAG00000011978) #24 ENSKMAG00000011865 fabp7a (ENSKMAG00000011821) fyna (ENSKMAG00000011800) marcksb (ENSKMAG00000011785) col10a1a (ENSKMAG00000011777) fhl5 (ENSKMAG00000011760) fut9a (ENSKMAG00000011748) fut9a (ENSKMAG00000011734) manea (ENSKMAG00000011704) ppp1cb (ENSKMAG00000011679) ypel5 (ENSKMAG00000011660) lclat1 (ENSKMAG00000011632) lbh (ENSKMAG00000011612) bmp4 (ENSKMAG00000011597) Cyprinodontoidei ANCESTRAL SPECIES 8 ENSGT00390000012355.A.b ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT01090000260229 ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a.f.d ENSGT00940000155095.i.a.f.c ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00530000063883 ENSGT00940000154800.k.a ENSGT00950000182836.a Poeciliinae ANCESTRAL SPECIES 8 ENSGT00390000012355.A.b ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n.f ENSGT00940000156713.n.e ENSGT01090000260229 ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a.f.d.c ENSGT00940000155095.i.a.f.c ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00530000063883 ENSGT00940000154800.k.a Platyfish MODERN SPECIES 10 SSBP4 (ENSXMAG00000025419) ENSXMAG00000010020 ENSXMAG00000009984 acvr1l (ENSXMAG00000024794) otomp (ENSXMAG00000009978) hs6st1b (ENSXMAG00000009977) uggt1 (ENSXMAG00000009880) ENSXMAG00000009872 ola1 (ENSXMAG00000009840) TRA2B (ENSXMAG00000009835) ENSXMAG00000009832 pcnt (ENSXMAG00000009826) atg9a (ENSXMAG00000009801) ENSXMAG00000009757 ENSXMAG00000009754 #21 sumo3b (ENSXMAG00000026869) #22 TSPEAR (ENSXMAG00000009750) #24 fabp7a (ENSXMAG00000009747) ENSXMAG00000009748 fabp7a (ENSXMAG00000009736) ENSXMAG00000021917 ENSXMAG00000009743 fyna (ENSXMAG00000009720) marcksb (ENSXMAG00000021623) col10a1a (ENSXMAG00000020162) fhl5 (ENSXMAG00000000710) fut9a (ENSXMAG00000000713) fut9a (ENSXMAG00000023977) fut9a (ENSXMAG00000029399) fut9a (ENSXMAG00000029184) manea (ENSXMAG00000009709) Poecilia ANCESTRAL SPECIES 10 ENSGT00390000012355.A.b ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n.f ENSGT00940000156713.n.e ENSGT01090000260229 ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a.f.d.c ENSGT00940000155095.i.a.f.d.d.a ENSGT00940000155095.i.a.f.c ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00530000063883 Guppy MODERN SPECIES 453 TMEM151B (ENSPREG00000005318) ENSPREG00000005334 utp25 (ENSPREG00000005340) ENSPREG00000005386 adprs (ENSPREG00000005535) ENSPREG00000005546 uggt1 (ENSPREG00000005619) ENSPREG00000005818 ola1 (ENSPREG00000005840) TRA2B (ENSPREG00000005879) ENSPREG00000005907 pcnt (ENSPREG00000005947) atg9a (ENSPREG00000006117) ENSPREG00000006160 ENSPREG00000006205 sumo3b (ENSPREG00000006212) #22 TSPEAR (ENSPREG00000006227) #24 ENSPREG00000006247 fabp7a (ENSPREG00000006283) fabp7a (ENSPREG00000006428) ENSPREG00000006643 fyna (ENSPREG00000006673) marcksb (ENSPREG00000006707) col10a1a (ENSPREG00000006734) fhl5 (ENSPREG00000006746) fut9a (ENSPREG00000006773) fut9a (ENSPREG00000006790) ENSPREG00000006832 manea (ENSPREG00000006846) ppp1cb (ENSPREG00000006862) ypel5 (ENSPREG00000006884) NAME_6 ANCESTRAL SPECIES 3 ENSGT00390000012355.A.b ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n.f ENSGT00940000156713.n.e ENSGT01090000260229 ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a.f.d.c ENSGT00940000155095.i.a.f.d.d.a ENSGT00940000155095.i.a.f.c ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00530000063883 Amazon molly DUPLICATION Amazon molly MODERN SPECIES 507 zgc:162707 (ENSPFOG00000007710) ehhadh (ENSPFOG00000007605) tmem41aa (ENSPFOG00000007558) igf2bp2a (ENSPFOG00000007221) tra2b (ENSPFOG00000007144) ENSPFOG00000007073 ENSPFOG00000007022 ANKZF1 (ENSPFOG00000006877) glb1l (ENSPFOG00000006508) ENSPFOG00000005639 ENSPFOG00000005608 #21 sumo3b (ENSPFOG00000022520) #22 FMNL2 (ENSPFOG00000005381) prpf40a (ENSPFOG00000004792) rprmb (ENSPFOG00000020712) GALNT13 (ENSPFOG00000004447) KCNJ3 (ENSPFOG00000004381) nr4a2a (ENSPFOG00000004317) ENSPFOG00000023115 GALNT5 (ENSPFOG00000004267) CYTIP (ENSPFOG00000004187) ACVR1C (ENSPFOG00000004103) ENSPFOG00000003858 ENSPFOG00000003842 upp2 (ENSPFOG00000003712) ENSPFOG00000003561 PKP4 (ENSPFOG00000024727) Amazon molly MODERN SPECIES 260 ENSPFOG00000016740 ENSPFOG00000016714 d2hgdh (ENSPFOG00000016660) acvr1l (ENSPFOG00000016625) otomp (ENSPFOG00000016598) hs6st1b (ENSPFOG00000016587) uggt1 (ENSPFOG00000016300) ENSPFOG00000016261 ola1 (ENSPFOG00000016213) TRA2B (ENSPFOG00000016208) ENSPFOG00000016205 pcnt (ENSPFOG00000016128) atg9a (ENSPFOG00000016076) ENSPFOG00000015993 ENSPFOG00000015983 #21 ENSPFOG00000015982 #22 TSPEAR (ENSPFOG00000015928) #24 ENSPFOG00000015786 fabp7a (ENSPFOG00000015765) fabp7a (ENSPFOG00000015760) ENSPFOG00000023764 fyna (ENSPFOG00000015722) marcksb (ENSPFOG00000015715) col10a1a (ENSPFOG00000015712) fhl5 (ENSPFOG00000015681) fhl5 (ENSPFOG00000015669) fut9a (ENSPFOG00000020422) fut9a (ENSPFOG00000020421) fut9a (ENSPFOG00000015664) manea (ENSPFOG00000015646) ppp1cb (ENSPFOG00000015626) Sailfin molly DUPLICATION Sailfin molly MODERN SPECIES 897 uggt1 (ENSPLAG00000016547) ENSPLAG00000016589 ola1 (ENSPLAG00000016640) TRA2B (ENSPLAG00000016709) ENSPLAG00000016723 pcnt (ENSPLAG00000016921) atg9a (ENSPLAG00000016977) ENSPLAG00000017000 ENSPLAG00000017027 ENSPLAG00000017040 #21 sumo3b (ENSPLAG00000017048) #22 TSPEAR (ENSPLAG00000017128) #24 ENSPLAG00000017142 fabp7a (ENSPLAG00000017148) fabp7a (ENSPLAG00000017152) Sailfin molly MODERN SPECIES 538 ENSPLAG00000014971 tra2b (ENSPLAG00000014979) ENSPLAG00000015005 ENSPLAG00000015066 ANKZF1 (ENSPLAG00000015082) glb1l (ENSPLAG00000015140) ENSPLAG00000015263 ENSPLAG00000015273 ENSPLAG00000015292 #22 FMNL2 (ENSPLAG00000015396) prpf40a (ENSPLAG00000015430) rprmb (ENSPLAG00000015449) GALNT13 (ENSPLAG00000015502) NAME_4 ANCESTRAL SPECIES 160 ENSGT00390000012355.A.b ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT01090000260229 ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a.f.d Mummichog MODERN SPECIES 2458 d2hgdh (ENSFHEG00000008746) acvr1l (ENSFHEG00000008759) otomp (ENSFHEG00000008795) hs6st1b (ENSFHEG00000008842) uggt1 (ENSFHEG00000008962) ENSFHEG00000008973 ola1 (ENSFHEG00000009030) TRA2B (ENSFHEG00000009235) ENSFHEG00000009260 ENSFHEG00000009269 pcnt (ENSFHEG00000009485) tbce (ENSFHEG00000000220) atg9a (ENSFHEG00000009644) ENSFHEG00000009764 ENSFHEG00000009781 #21 sumo3b (ENSFHEG00000009799) #22 TSPEAR (ENSFHEG00000009810) #24 ENSFHEG00000009827 fabp7a (ENSFHEG00000009837) ENSFHEG00000009852 ENSFHEG00000009869 fyna (ENSFHEG00000009938) marcksb (ENSFHEG00000009956) col10a1a (ENSFHEG00000009962) fhl5 (ENSFHEG00000009976) fut9a (ENSFHEG00000010159) Sheepshead minnow DUPLICATION Sheepshead minnow MODERN SPECIES 286 zgc:162707 (ENSCVAG00000004706) ehhadh (ENSCVAG00000004692) tmem41aa (ENSCVAG00000004681) igf2bp2a (ENSCVAG00000004656) tra2b (ENSCVAG00000004587) ENSCVAG00000000971 ENSCVAG00000004573 ANKZF1 (ENSCVAG00000004564) glb1l (ENSCVAG00000004531) ENSCVAG00000004519 ENSCVAG00000004505 ENSCVAG00000004445 #21 SUMO3 (ENSCVAG00000004438) #22 FMNL2 (ENSCVAG00000004421) prpf40a (ENSCVAG00000004275) rprmb (ENSCVAG00000004254) GALNT13 (ENSCVAG00000004241) KCNJ3 (ENSCVAG00000004197) nr4a2a (ENSCVAG00000004188) GALNT5 (ENSCVAG00000004167) CYTIP (ENSCVAG00000004002) ACVR1C (ENSCVAG00000003992) ENSCVAG00000003967 ENSCVAG00000003938 upp2 (ENSCVAG00000003929) ENSCVAG00000003922 PKP4 (ENSCVAG00000003890) Sheepshead minnow MODERN SPECIES 714 hs6st1b (ENSCVAG00000004175) uggt1 (ENSCVAG00000004143) ENSCVAG00000003995 ola1 (ENSCVAG00000003966) TRA2B (ENSCVAG00000003909) ENSCVAG00000003894 pcnt (ENSCVAG00000003848) atg9a (ENSCVAG00000003531) ENSCVAG00000003466 ENSCVAG00000003391 #21 ENSCVAG00000003382 #22 TSPEAR (ENSCVAG00000003372) #24 ENSCVAG00000003361 fabp7a (ENSCVAG00000003322) ENSCVAG00000003317 fyna (ENSCVAG00000003307) marcksb (ENSCVAG00000003267) col10a1a (ENSCVAG00000003260) fhl5 (ENSCVAG00000003254) Percomorphaceae_C ANCESTRAL SPECIES 13 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000177394 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241 ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A Eupercaria ANCESTRAL SPECIES 25 ENSGT00940000177394 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v.k.n #22 ENSGT00940000168354 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241 ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A Eupecaria_A ANCESTRAL SPECIES 24 ENSGT00940000177394 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v.k.n #22 ENSGT00940000168354 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241 ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A Ballan wrasse MODERN SPECIES 404 pttg1ipb (ENSLBEG00000020613) ENSLBEG00000020646 #22 FMNL2 (ENSLBEG00000020682) prpf40a (ENSLBEG00000020799) rprmb (ENSLBEG00000020930) GALNT13 (ENSLBEG00000020972) KCNJ3 (ENSLBEG00000021042) nr4a2a (ENSLBEG00000021057) GALNT5 (ENSLBEG00000021125) ENSLBEG00000021305 CYTIP (ENSLBEG00000021319) ACVR1C (ENSLBEG00000021355) ENSLBEG00000021415 ENSLBEG00000021470 upp2 (ENSLBEG00000021488) ENSLBEG00000021527 Eupecaria_B ANCESTRAL SPECIES ENSGT00950000182895.a.b.u.b #22 Eupecaria_C ANCESTRAL SPECIES 24 ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000161051.a.a.a.a.b ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v.k.n #22 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A ENSGT00940000155773.b Eupercaria_incertae_sedis ANCESTRAL SPECIES 24 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000161051.a.a.a.a.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v.k.n #22 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A ENSGT00940000155773.b Large yellow croaker MODERN SPECIES 490 nme9 (ENSLCRG00005009804) zgc:162707 (ENSLCRG00005009805) ehhadh (ENSLCRG00005009806) tmem41aa (ENSLCRG00005009808) igf2bp2a (ENSLCRG00005009811) ENSLCRG00005010177 tra2b (ENSLCRG00005010179) ENSLCRG00005010183 ENSLCRG00005010188 ANKZF1 (ENSLCRG00005010191) glb1l (ENSLCRG00005010230) ENSLCRG00005012252 ENSLCRG00005012717 #21 ENSLCRG00005012718 ##22 ENSLCRG00005012722 ENSLCRG00005012724 #22 FMNL2 (ENSLCRG00005012775) ENSLCRG00005016128 prpf40a (ENSLCRG00005016144) rprmb (ENSLCRG00005017705) GALNT13 (ENSLCRG00005017713) KCNJ3 (ENSLCRG00005017944) nr4a2a (ENSLCRG00005017945) ENSLCRG00005017946 ENSLCRG00005017947 ITGA4 (ENSLCRG00005017949) cerkl (ENSLCRG00005017953) neurod1 (ENSLCRG00005017954) ENSLCRG00005017955 RAPH1 (ENSLCRG00005017966) rif1 (ENSLCRG00005018150) Percomorphaceae_D ANCESTRAL SPECIES 12 ENSGT01030000235116 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241 ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A Carangaria ANCESTRAL SPECIES 12 ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00940000161051.a.a.a.a.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a.f ENSGT00940000164909.e.a.e ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241 ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A Carangaria_A ANCESTRAL SPECIES 11 ENSGT01030000235116 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000161051.a.a.a.a.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a.f ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241 ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A Barramundi perch MODERN SPECIES 142 MARCHF4 (ENSLCAG00010023784) SMARCAL1 (ENSLCAG00010023788) nme9 (ENSLCAG00010023799) zgc:162707 (ENSLCAG00010023808) ehhadh (ENSLCAG00010023810) tmem41aa (ENSLCAG00010023814) igf2bp2a (ENSLCAG00010023821) tra2b (ENSLCAG00010023836) ENSLCAG00010023840 ENSLCAG00010023844 ANKZF1 (ENSLCAG00010023848) ENSLCAG00010023852 glb1l (ENSLCAG00010023912) ENSLCAG00010024031 pttg1ipb (ENSLCAG00010024070) sumo3b (ENSLCAG00010024086) #22 FMNL2 (ENSLCAG00010024156) prpf40a (ENSLCAG00010024203) rprmb (ENSLCAG00010024312) GALNT13 (ENSLCAG00010024346) KCNJ3 (ENSLCAG00010024414) nr4a2a (ENSLCAG00010024428) ENSLCAG00010024433 GALNT5 (ENSLCAG00010024467) ENSLCAG00010024518 CYTIP (ENSLCAG00010024522) ACVR1C (ENSLCAG00010024528) ENSLCAG00010024537 ENSLCAG00010024542 upp2 (ENSLCAG00010024544) CCDC148 (ENSLCAG00010024546) Seriola ANCESTRAL SPECIES 6 ENSGT01030000235116 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000161051.a.a.a.a.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a.f ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241 ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A Yellowtail amberjack MODERN SPECIES 2388 MARCHF4 (ENSSLDG00000007291) SMARCAL1 (ENSSLDG00000007224) nme9 (ENSSLDG00000007187) zgc:162707 (ENSSLDG00000007170) ehhadh (ENSSLDG00000007146) tmem41aa (ENSSLDG00000007119) igf2bp2a (ENSSLDG00000007046) tra2b (ENSSLDG00000007005) ENSSLDG00000006947 ENSSLDG00000006914 ANKZF1 (ENSSLDG00000006877) glb1l (ENSSLDG00000006777) ENSSLDG00000006737 ENSSLDG00000006621 ENSSLDG00000006596 #21 sumo3b (ENSSLDG00000006583) #22 FMNL2 (ENSSLDG00000006527) prpf40a (ENSSLDG00000006462) rprmb (ENSSLDG00000006442) GALNT13 (ENSSLDG00000006372) KCNJ3 (ENSSLDG00000006337) nr4a2a (ENSSLDG00000006303) ENSSLDG00000006252 ENSSLDG00000006227 GALNT5 (ENSSLDG00000006129) CYTIP (ENSSLDG00000006085) ACVR1C (ENSSLDG00000006052) ENSSLDG00000006006 ENSSLDG00000005975 upp2 (ENSSLDG00000005944) ENSSLDG00000005917 Greater amberjack MODERN SPECIES 21 MARCHF4 (ENSSDUG00000017455) SMARCAL1 (ENSSDUG00000017470) nme9 (ENSSDUG00000017498) ENSSDUG00000017536 zgc:162707 (ENSSDUG00000017544) ehhadh (ENSSDUG00000017550) tmem41aa (ENSSDUG00000017558) igf2bp2a (ENSSDUG00000017581) tra2b (ENSSDUG00000017670) ENSSDUG00000017678 ENSSDUG00000017705 ANKZF1 (ENSSDUG00000017724) glb1l (ENSSDUG00000017744) ENSSDUG00000017812 ENSSDUG00000017892 #21 ENSSDUG00000017903 #22 FMNL2 (ENSSDUG00000017925) prpf40a (ENSSDUG00000018063) rprmb (ENSSDUG00000018139) GALNT13 (ENSSDUG00000018149) KCNJ3 (ENSSDUG00000018189) nr4a2a (ENSSDUG00000018206) ENSSDUG00000018225 GALNT5 (ENSSDUG00000018255) CYTIP (ENSSDUG00000018289) ACVR1C (ENSSDUG00000018316) ENSSDUG00000018358 ENSSDUG00000018404 upp2 (ENSSDUG00000018460) CCDC148 (ENSSDUG00000018485) PKP4 (ENSSDUG00000018522) Anabantaria ANCESTRAL SPECIES 14 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000161051.a.a.a.a.b ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241 ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000160160 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 Anabantoidei ANCESTRAL SPECIES 13 ENSGT00940000155682.g.a ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000161051.a.a.a.a.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000160160 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A Climbing perch MODERN SPECIES 12 MARCHF4 (ENSATEG00000020649) SMARCAL1 (ENSATEG00000020624) nme9 (ENSATEG00000020557) ENSATEG00000029040 zgc:162707 (ENSATEG00000025802) ehhadh (ENSATEG00000020518) tmem41aa (ENSATEG00000020502) igf2bp2a (ENSATEG00000020389) tra2b (ENSATEG00000020354) ENSATEG00000020337 ENSATEG00000020302 ENSATEG00000020278 glb1l (ENSATEG00000020221) ENSATEG00000020110 ENSATEG00000020076 #21 ENSATEG00000025684 #22 FMNL2 (ENSATEG00000019742) prpf40a (ENSATEG00000019682) RPRM (ENSATEG00000019661) GALNT13 (ENSATEG00000019632) KCNJ3 (ENSATEG00000025852) nr4a2a (ENSATEG00000019598) ENSATEG00000019568 GALNT5 (ENSATEG00000019155) CYTIP (ENSATEG00000019083) ACVR1C (ENSATEG00000019070) ENSATEG00000019010 ENSATEG00000018984 ENSATEG00000018973 UPP2 (ENSATEG00000018949) CCDC148 (ENSATEG00000018940) Siamese fighting fish DUPLICATION Siamese fighting fish MODERN SPECIES 12 ENSBSLG00000022810 d2hgdh (ENSBSLG00000022516) acvr1l (ENSBSLG00000022490) otomp (ENSBSLG00000022464) hs6st1b (ENSBSLG00000022354) uggt1 (ENSBSLG00000022072) ENSBSLG00000022019 ola1 (ENSBSLG00000021790) TRA2B (ENSBSLG00000021742) ENSBSLG00000021705 pcnt (ENSBSLG00000021205) zgc:112416 (ENSBSLG00000020378) atg9a (ENSBSLG00000019864) ENSBSLG00000019483 ENSBSLG00000019463 #21 ENSBSLG00000019412 #22 TSPEAR (ENSBSLG00000019301) #24 ENSBSLG00000019215 fabp7a (ENSBSLG00000019185) ENSBSLG00000018976 fyna (ENSBSLG00000017694) marcksb (ENSBSLG00000017635) col10a1a (ENSBSLG00000017628) ENSBSLG00000017605 fhl5 (ENSBSLG00000017572) fut9a (ENSBSLG00000017559) manea (ENSBSLG00000017553) ppp1cb (ENSBSLG00000017058) ypel5 (ENSBSLG00000024875) lclat1 (ENSBSLG00000024868) lbh (ENSBSLG00000024858) Siamese fighting fish MODERN SPECIES 11 COL6A2 (ENSBSLG00000007732) MARCHF4 (ENSBSLG00000007287) SMARCAL1 (ENSBSLG00000006782) nme9 (ENSBSLG00000006456) zgc:162707 (ENSBSLG00000006279) ehhadh (ENSBSLG00000005946) tmem41aa (ENSBSLG00000005941) igf2bp2a (ENSBSLG00000005124) tra2b (ENSBSLG00000004950) ENSBSLG00000004919 ENSBSLG00000026238 glb1l (ENSBSLG00000026206) ANKZF1 (ENSBSLG00000026199) ENSBSLG00000026166 ENSBSLG00000026160 #21 sumo3b (ENSBSLG00000026155) #22 FMNL2 (ENSBSLG00000026029) prpf40a (ENSBSLG00000025774) rprmb (ENSBSLG00000025760) GALNT13 (ENSBSLG00000025741) KCNJ3 (ENSBSLG00000025732) nr4a2a (ENSBSLG00000025713) ENSBSLG00000025701 GALNT5 (ENSBSLG00000025561) CYTIP (ENSBSLG00000025532) ACVR1C (ENSBSLG00000025513) ACVR1 (ENSBSLG00000025454) ENSBSLG00000025432 upp2 (ENSBSLG00000025417) CCDC148 (ENSBSLG00000025397) PKP4 (ENSBSLG00000024795) Pinecone sodierfish DUPLICATION Pinecone sodierfish MODERN SPECIES 13 MARCHF4 (ENSMMDG00005011767) SMARCAL1 (ENSMMDG00005011782) ENSMMDG00005012370 nme9 (ENSMMDG00005012373) zgc:162707 (ENSMMDG00005012376) ehhadh (ENSMMDG00005012377) tmem41aa (ENSMMDG00005012383) igf2bp2a (ENSMMDG00005012390) tra2b (ENSMMDG00005012404) ENSMMDG00005012405 ENSMMDG00005012414 ANKZF1 (ENSMMDG00005012419) glb1l (ENSMMDG00005012497) ENSMMDG00005015828 ENSMMDG00005015861 #21 sumo3b (ENSMMDG00005015867) #22 FMNL2 (ENSMMDG00005015888) prpf40a (ENSMMDG00005016028) rprmb (ENSMMDG00005018898) GALNT13 (ENSMMDG00005018908) KCNJ3 (ENSMMDG00005019236) nr4a2a (ENSMMDG00005019238) GPD2 (ENSMMDG00005019248) GALNT5 (ENSMMDG00005019585) ENSMMDG00005019589 CYTIP (ENSMMDG00005019593) ACVR1C (ENSMMDG00005019596) ENSMMDG00005019599 ENSMMDG00005019600 upp2 (ENSMMDG00005019606) CCDC148 (ENSMMDG00005019711) Pinecone sodierfish MODERN SPECIES 14 ENSMMDG00005023097 d2hgdh (ENSMMDG00005023110) acvr1l (ENSMMDG00005023119) otomp (ENSMMDG00005023121) hs6st1b (ENSMMDG00005023123) uggt1 (ENSMMDG00005023163) ENSMMDG00005023493 ola1 (ENSMMDG00005007174) TRA2B (ENSMMDG00005007194) ENSMMDG00005007197 ENSMMDG00005007208 zgc:112416 (ENSMMDG00005007217) atg9a (ENSMMDG00005007226) ENSMMDG00005007261 ENSMMDG00005007292 #21 ENSMMDG00005007298 #22 TSPEAR (ENSMMDG00005007303) #24 ENSMMDG00005007309 fabp7a (ENSMMDG00005007318) ENSMMDG00005007332 fyna (ENSMMDG00005007339) marcksb (ENSMMDG00005007788) col10a1a (ENSMMDG00005007791) ENSMMDG00005007792 fhl5 (ENSMMDG00005007795) fut9a (ENSMMDG00005007797) manea (ENSMMDG00005007799) ppp1cb (ENSMMDG00005007815) ENSMMDG00005008164 ypel5 (ENSMMDG00005008173) lclat1 (ENSMMDG00005008174) Osteoglossiformes ANCESTRAL SPECIES 79 ENSGT00940000155682.g.a ENSGT00940000162889.a ENSGT00940000158179 ENSGT00390000006618 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.eb ENSGT00940000155489.a ENSGT00390000011514 ENSGT00940000161051.a.a.a.a.b ENSGT00390000014839.b ENSGT00390000005911 ENSGT00940000164909.c ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v #22 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000158193 #23 ENSGT00510000047718.c.b #24 ENSGT00940000157267 ENSGT00940000156449.c ENSGT00950000183046.a.a.fb ENSGT00390000005530.a.a.k ENSGT00930000150950.b ENSGT00940000154319.c.a ENSGT00940000158239.a.b.b ENSGT00940000155861.C.e ENSGT00940000156444.f ENSGT00390000005159.k ENSGT00500000044939 ENSGT00940000156089 ENSGT00940000156552.c.a.g P. kingsleyae MODERN SPECIES 35 TMEM169 (ENSPKIG00000010060) COL6A2 (ENSPKIG00000010019) COL6A1 (ENSPKIG00000009956) marchf4l (ENSPKIG00000009933) zgc:162707 (ENSPKIG00000009919) tmem41aa (ENSPKIG00000009907) igf2bp2b (ENSPKIG00000009855) TRA2B (ENSPKIG00000009810) ENSPKIG00000009766 zgc:112416 (ENSPKIG00000009752) ENSPKIG00000009623 atg9a (ENSPKIG00000009492) ANKZF1 (ENSPKIG00000009427) ENSPKIG00000009236 ENSPKIG00000009145 #21 sumo3b (ENSPKIG00000009126) #22 ube2g2 (ENSPKIG00000009101) #23 TSPEAR (ENSPKIG00000009073) #24 ENSPKIG00000009015 BMPR2 (ENSPKIG00000008953) fam117bb (ENSPKIG00000008905) wdr12 (ENSPKIG00000008839) sumo1 (ENSPKIG00000008789) ENSPKIG00000008769 FZD7 (ENSPKIG00000008751) ENSPKIG00000008738 ALS2 (ENSPKIG00000008582) MPP4 (ENSPKIG00000008511) TMEM237 (ENSPKIG00000008472) cyp20a1 (ENSPKIG00000008410) ABI2 (ENSPKIG00000008314) Osteoglossocephalai ANCESTRAL SPECIES 56 ENSGT00940000164537 ENSGT00390000010672 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000162528 ENSGT00940000161051.a.a.a.a.a ENSGT00940000161051.a.a.a.a.b ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00390000014839.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909 ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v #22 ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000158193 #23 ENSGT00510000047718.d #24 ENSGT00510000047718.c #24 ENSGT00940000157267 Osteoglossiformes ANCESTRAL SPECIES 79 ENSGT00390000015276 ENSGT00940000155682.g.a ENSGT00940000162889.a ENSGT00940000158179 ENSGT00390000006618 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.eb ENSGT00940000155489.a ENSGT00390000011514 ENSGT00940000161051.a.a.a.a.b ENSGT00390000014839.b ENSGT00390000005911 ENSGT00940000164909.c ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v #22 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000158193 #23 ENSGT00510000047718.c.b #24 ENSGT00940000157267 ENSGT00940000156449.c ENSGT00950000183046.a.a.fb ENSGT00390000005530.a.a.k ENSGT00930000150950.b ENSGT00940000154319.c.a ENSGT00940000158239.a.b.b ENSGT00940000155861.C.e ENSGT00940000156444.f ENSGT00390000005159.k ENSGT00500000044939 ENSGT00940000156089 Asian bonytongue MODERN SPECIES 5 ENSSFOG00015024992 COL6A1 (ENSSFOG00015007912) ENSSFOG00015025509 marchf4l (ENSSFOG00015007863) ENSSFOG00015025008 zgc:162707 (ENSSFOG00015031853) tmem41aa (ENSSFOG00015007825) igf2bp2b (ENSSFOG00015007770) TRA2B (ENSSFOG00015007738) zgc:112416 (ENSSFOG00015007698) ENSSFOG00015007680 atg9a (ENSSFOG00015007618) ANKZF1 (ENSSFOG00015007560) ENSSFOG00015007347 ENSSFOG00015027566 #21 sumo3a (ENSSFOG00015007119) #22 ube2g2 (ENSSFOG00015026166) #23 TSPEAR (ENSSFOG00015007048) #24 ENSSFOG00015006907 BMPR2 (ENSSFOG00015006844) fam117bb (ENSSFOG00015032151) ICA1L (ENSSFOG00015030869) wdr12 (ENSSFOG00015006713) ENSSFOG00015027483 SUMO1 (ENSSFOG00015025642) FZD7 (ENSSFOG00015006669) ALS2 (ENSSFOG00015006570) MPP4 (ENSSFOG00015006525) TMEM237 (ENSSFOG00015006497) cyp20a1 (ENSSFOG00015006435) ABI2 (ENSSFOG00015006375) Clupeocephala ANCESTRAL SPECIES 433 ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00390000011514 ENSGT00730000110871.a.a.a.b ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v #22 Otomorpha ANCESTRAL SPECIES 24 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v #22 ENSGT00510000047718.d #24 ENSGT00980000199010 ENSGT00940000164964.b ENSGT00940000156449.a ENSGT00950000183046.a.a.fb ENSGT00390000013916 ENSGT00940000158239.a.b ENSGT00940000158239.a.a.c ENSGT00940000155861.C.f ENSGT00940000156444.d ENSGT00390000005159.i ENSGT00940000156089.f ENSGT00940000156552.c.a ENSGT00530000063873.B ENSGT00940000159069 Otophysi ANCESTRAL SPECIES 133 ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00940000181146 ENSGT00940000161051.a.a.a.a.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v #22 ENSGT00510000047718.d #24 ENSGT00950000183009.db.b ENSGT00940000154913 ENSGT00940000163412 ENSGT00940000157516 ENSGT00390000005923 ENSGT00940000160909.f.a ENSGT00390000015818 ENSGT00940000158361 ENSGT00390000017619 ENSGT00390000001856 ENSGT00940000160306.o.b ENSGT00940000161562 ENSGT00390000008812.a.a ENSGT00940000160299 Characiphysae ANCESTRAL SPECIES ENSGT00950000182895.a.b.v #22 Characiphysae_b ANCESTRAL SPECIES ENSGT00950000182895.a.b.v #22 Characoidei ANCESTRAL SPECIES ENSGT00950000182895.a.b.v #22 Mexicana tetra MODERN SPECIES 155 sumo3a (ENSAMXG00000037441) #22 ENSAMXG00000004837 coq7 (ENSAMXG00000004846) notum2 (ENSAMXG00000004857) ccr7 (ENSAMXG00000031087) cycsb (ENSAMXG00000041744) nfe2l2b (ENSAMXG00000035783) mtx2 (ENSAMXG00000004894) lnpk (ENSAMXG00000043426) atp5mc3b (ENSAMXG00000031866) chrna1 (ENSAMXG00000042936) ENSAMXG00000031617 ENSAMXG00000041604 GPR155 (ENSAMXG00000004910) ENSAMXG00000033114 ola1 (ENSAMXG00000004913) Cyprinoidei ANCESTRAL SPECIES 59 ENSGT00390000005159.i ENSGT00940000156444.d ENSGT00940000155861.C.f ENSGT00940000158239.a.b ENSGT00390000013916.g.b ENSGT00950000183046.a.a.fb ENSGT00940000156449.a ENSGT00940000164964.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00940000181146 ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v #22 ENSGT00510000047718.d #24 ENSGT00950000183009.db.b ENSGT00940000154913 ENSGT00940000163412 ENSGT00940000157516 ENSGT00390000005923 ENSGT00940000160909.f.a ENSGT00390000015818 ENSGT00940000158361 ENSGT00390000017619 ENSGT00390000001856 ENSGT00940000160306.o.b ENSGT00940000161562 ENSGT00390000008812.a.a ENSGT00940000160299 Cyprininae ANCESTRAL SPECIES 232 ENSGT00940000174369 ENSGT00940000156552.c.a.b ENSGT00940000156089.f.a ENSGT00940000156444.d.d ENSGT00940000155861.C.f.g ENSGT00860000133854 ENSGT00950000183046.a.a.fb.c.b ENSGT00940000156449.a.b ENSGT00940000161051.a.a.a.a.a.b ENSGT00940000154856.A.a.d.a ENSGT00950000182942.a.b.h ENSGT00390000005911.n ENSGT00950000182942.a.b.g.a ENSGT00940000164909.e.a.b ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v #22 ENSGT00510000047718.d.a #24 ENSGT00950000183009.db.b.d ENSGT00940000154913.bb.a ENSGT00940000163412.d ENSGT00940000157516.b ENSGT00390000006618.m.a ENSGT00390000005923.fb ENSGT00940000160909.f.a.a ENSGT00390000015818.j ENSGT00940000158361.l ENSGT01000000221414 ENSGT00940000160306.o.b.b ENSGT00940000161562.c ENSGT00390000008812.a.a.c ENSGT00940000160299.c Goldfish DUPLICATION Goldfish MODERN SPECIES 50 mmd (ENSCARG00000033280) ENSCARG00000033330 ubn2b (ENSCARG00000033359) trir (ENSCARG00000033422) HOOK2 (ENSCARG00000033609) junbb (ENSCARG00000036449) rtbdn (ENSCARG00000036456) MAST1 (ENSCARG00000022935) ATG4D (ENSCARG00000024672) ENSCARG00000024696 SPHK1 (ENSCARG00000024706) cygb1 (ENSCARG00000024802) ENSCARG00000024815 GGA3 (ENSCARG00000024855) NUP85 (ENSCARG00000025341) ENSCARG00000025661 #22 jpt1b (ENSCARG00000025675) ENSCARG00000025689 ENSCARG00000025694 MCOLN1 (ENSCARG00000025717) ENSCARG00000026312 ENSCARG00000026320 ENSCARG00000026327 ENSCARG00000026335 ubn2b (ENSCARG00000026351) trir (ENSCARG00000026472) HOOK2 (ENSCARG00000026534) ENSCARG00000027035 junbb (ENSCARG00000027041) rtbdn (ENSCARG00000027047) ENSCARG00000027061 Goldfish MODERN SPECIES 46 ENSCARG00000021653 wdsub1 (ENSCARG00000021539) ENSCARG00000017322 FAM171B (ENSCARG00000017096) ENSCARG00000015756 GULP1 (ENSCARG00000015713) ENSCARG00000015670 ENSCARG00000015690 ENSCARG00000015660 ENSCARG00000015646 zgc:112416 (ENSCARG00000015634) pcnt (ENSCARG00000015475) ATG9A (ENSCARG00000015429) ENSCARG00000014750 pttg1ipa (ENSCARG00000014714) ENSCARG00000014705 #22 ENSCARG00000014633 coq7 (ENSCARG00000014608) notum2 (ENSCARG00000014585) ccr7 (ENSCARG00000014577) cycsb (ENSCARG00000014575) nfe2l2b (ENSCARG00000014572) mtx2 (ENSCARG00000014514) lnpk (ENSCARG00000014454) atp5mc3b (ENSCARG00000014409) chrna1 (ENSCARG00000013628) ENSCARG00000013590 OLA1 (ENSCARG00000013532) ENSCARG00000013514 ENSCARG00000013504 ENSCARG00000011675 Goldfish MODERN SPECIES 27 ENSCARG00000012833 ENSCARG00000012792 RAPH1 (ENSCARG00000011566) abi2a (ENSCARG00000011394) ENSCARG00000011365 ENSCARG00000011349 ALS2 (ENSCARG00000011069) fzd7a (ENSCARG00000011035) ENSCARG00000011004 fam117bb (ENSCARG00000010989) bmpr2b (ENSCARG00000010952) ENSCARG00000010940 ENSCARG00000010930 ENSCARG00000010914 ENSCARG00000010706 ENSCARG00000010617 #22 TSPEAR (ENSCARG00000010578) #24 tra2b (ENSCARG00000010563) ENSCARG00000010554 igf2bp2a (ENSCARG00000008723) tmem41aa (ENSCARG00000008629) zgc:162707 (ENSCARG00000008624) nup35 (ENSCARG00000008446) znf804a (ENSCARG00000008433) ENSCARG00000008431 ENSCARG00000008429 zc3h15 (ENSCARG00000008382) itgav (ENSCARG00000007174) ENSCARG00000007040 umps (ENSCARG00000007022) cryba2b (ENSCARG00000007008) Goldfish DUPLICATION Goldfish MODERN SPECIES 49 tmem237a (ENSCARG00000058541) MPP4 (ENSCARG00000058403) ALS2 (ENSCARG00000058302) fzd7a (ENSCARG00000058275) CARF (ENSCARG00000058221) fam117bb (ENSCARG00000058201) bmpr2b (ENSCARG00000058042) ENSCARG00000057993 ENSCARG00000057935 ENSCARG00000057885 ENSCARG00000057849 ANKZF1 (ENSCARG00000057804) glb1l (ENSCARG00000056680) ENSCARG00000055613 ENSCARG00000055538 #21 ENSCARG00000055496 #22 TSPEAR (ENSCARG00000055474) #24 tra2b (ENSCARG00000055456) igf2bp2a (ENSCARG00000051497) tmem41aa (ENSCARG00000051194) ehhadh (ENSCARG00000051156) zgc:162707 (ENSCARG00000051136) ENSCARG00000051108 med14 (ENSCARG00000050826) grtp1b (ENSCARG00000050799) lamp1b (ENSCARG00000050787) cd247l (ENSCARG00000050780) pou2f1b (ENSCARG00000050768) tmtc4 (ENSCARG00000050347) crygm2d13 (ENSCARG00000050297) ENSCARG00000050226 Goldfish MODERN SPECIES 24 ENSCARG00000026825 wdsub1 (ENSCARG00000029251) ENSCARG00000029455 MARCHF7 (ENSCARG00000035270) FAM171B (ENSCARG00000035290) zswim2 (ENSCARG00000035294) CALCRL (ENSCARG00000035311) GULP1 (ENSCARG00000035354) ENSCARG00000035363 ENSCARG00000005837 ENSCARG00000005853 pcnt (ENSCARG00000005921) atg9a (ENSCARG00000006247) ENSCARG00000006674 pttg1ipa (ENSCARG00000011323) ENSCARG00000011330 #22 ENSCARG00000011374 coq7 (ENSCARG00000011627) ccr7 (ENSCARG00000011694) cycsb (ENSCARG00000011705) nfe2l2b (ENSCARG00000011714) mtx2 (ENSCARG00000011733) lnpk (ENSCARG00000011769) atp5mc3b (ENSCARG00000011794) chrna1 (ENSCARG00000011844) ENSCARG00000012343 ENSCARG00000012348 GPR155 (ENSCARG00000012365) ENSCARG00000012479 SP3 (ENSCARG00000012556) ENSCARG00000012561 Cyprininae_a ANCESTRAL SPECIES 210 ENSGT00940000156552.c.a.b ENSGT00940000156089.f.a ENSGT00940000156444.d.d ENSGT00940000155861.C.f.g ENSGT00860000133854 ENSGT00950000183046.a.a.fb.c.b ENSGT00940000156449.a.b ENSGT00940000161051.a.a.a.a.a.b ENSGT00940000154856.A.a.d.a ENSGT00940000181146.a ENSGT00390000005911.n ENSGT00950000182942.a.b.g.a.b ENSGT00950000182942.a.b.g.a.a ENSGT00940000164909.e.a.b ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v #22 ENSGT00510000047718.d.a #24 ENSGT00950000183009.db.b.d ENSGT00970000197261 ENSGT00940000154913.bb.a ENSGT00940000163412.d ENSGT00940000157516.b ENSGT00390000006618.m.a ENSGT00390000005923.fb ENSGT00940000160909.f.a.a ENSGT00390000015818.j ENSGT00940000158361.l ENSGT01000000221414 ENSGT00390000017619.a ENSGT00390000001856.f ENSGT00940000160306.o.b.a.a Golden-line barbel MODERN SPECIES 161 prkag3b (ENSSGRG00000035315) ENSSGRG00000035280 ENSSGRG00000035275 RAPH1 (ENSSGRG00000035192) abi2a (ENSSGRG00000034353) MPP4 (ENSSGRG00000034221) ALS2 (ENSSGRG00000034030) bmpr2b (ENSSGRG00000033981) ENSSGRG00000033621 ENSSGRG00000033455 ENSSGRG00000033449 ENSSGRG00000033447 glb1l (ENSSGRG00000033446) ENSSGRG00000033344 ENSSGRG00000033341 #21 ENSSGRG00000033279 #22 ENSSGRG00000033274 #24 TSPEAR (ENSSGRG00000033267) #24 tra2b (ENSSGRG00000033266) ENSSGRG00000033265 igf2bp2a (ENSSGRG00000033262) tmem41aa (ENSSGRG00000033261) ehhadh (ENSSGRG00000033260) zgc:162707 (ENSSGRG00000033258) nup35 (ENSSGRG00000033256) ENSSGRG00000033257 Common carp reference DUPLICATION Common carp reference MODERN SPECIES 10 ENSCCRG00000054143 glulb (ENSCCRG00000018622) pik3r6a (ENSCCRG00000033613) PIK3R6 (ENSCCRG00000033608) PIK3R5 (ENSCCRG00000033547) ENSCCRG00000073098 ntn1a (ENSCCRG00000080081) stx8 (ENSCCRG00000060142) ENSCCRG00000000387 cfap52 (ENSCCRG00000014221) ENSCCRG00000031121 grb2a (ENSCCRG00000076119) mif4gda (ENSCCRG00000069673) ENSCCRG00000015088 gga3a (ENSCCRG00000015157) ENSCCRG00000044215 #22 jpt1a (ENSCCRG00000082227) ENSCCRG00000069341 ENSCCRG00000060661 septin9b (ENSCCRG00000044759) ENSCCRG00000063208 rhbdl3 (ENSCCRG00000031119) znf207b (ENSCCRG00000022495) cd7al (ENSCCRG00000057203) rhot1b (ENSCCRG00000022542) tefm (ENSCCRG00000056201) atad5b (ENSCCRG00000022806) suz12b (ENSCCRG00000022847) utp6 (ENSCCRG00000023341) rab11fip4b (ENSCCRG00000068128) trim25 (ENSCCRG00000025552) Common carp reference MODERN SPECIES 41 ENSCCRG00000072640 ENSCCRG00000004178 abi2a (ENSCCRG00000003969) ENSCCRG00000004189 ENSCCRG00000029304 ENSCCRG00000073703 fam117bb (ENSCCRG00000078665) bmpr2b (ENSCCRG00000017905) ENSCCRG00000073722 ENSCCRG00000006872 ENSCCRG00000006883 ENSCCRG00000001290 glb1l (ENSCCRG00000007967) ENSCCRG00000005685 ENSCCRG00000075178 #21 ENSCCRG00000061289 #22 ENSCCRG00000005385 #24 tra2b (ENSCCRG00000005399) igf2bp2a (ENSCCRG00000082615) tmem41aa (ENSCCRG00000043770) zgc:162707 (ENSCCRG00000011845) znf804a (ENSCCRG00000011836) ENSCCRG00000057926 zc3h15 (ENSCCRG00000054441) itgav (ENSCCRG00000031791) si:dkey-69o16.5 (ENSCCRG00000054890) umps (ENSCCRG00000000292) cryba2b (ENSCCRG00000078291) fev (ENSCCRG00000062040) cdk5r2b (ENSCCRG00000062556) wnt10a (ENSCCRG00000011897) Common carp reference MODERN SPECIES 16 wdsub1 (ENSCCRG00000025177) ENSCCRG00000026304 MARCHF7 (ENSCCRG00000022917) FAM171B (ENSCCRG00000022922) zswim2 (ENSCCRG00000022927) CALCRL (ENSCCRG00000005532) GULP1 (ENSCCRG00000027127) ENSCCRG00000076943 ENSCCRG00000008347 ENSCCRG00000016466 ENSCCRG00000000184 pcnt (ENSCCRG00000000384) atg9a (ENSCCRG00000000503) ENSCCRG00000040506 pttg1ipa (ENSCCRG00000013616) ENSCCRG00000013601 #22 ENSCCRG00000057193 coq7 (ENSCCRG00000071693) notum2 (ENSCCRG00000002035) ccr7 (ENSCCRG00000002028) cycsb (ENSCCRG00000060152) nfe2l2b (ENSCCRG00000002018) mtx2 (ENSCCRG00000062543) ENSCCRG00000067586 lnpk (ENSCCRG00000051273) chrna1 (ENSCCRG00000080784) ENSCCRG00000064998 GPR155 (ENSCCRG00000051004) ENSCCRG00000051001 ENSCCRG00000050997 ENSCCRG00000082658 Clupeiformes ANCESTRAL SPECIES 164 ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v #22 ENSGT00510000047718.d #24 ENSGT00980000199010 ENSGT00940000156449.a ENSGT00950000183046.a.a.fb ENSGT00390000013916 ENSGT00940000158239.a.a.c ENSGT00940000155861.C.f ENSGT00940000156444.d ENSGT00390000005159.i ENSGT00940000156089.f ENSGT00940000156552.c.a ENSGT00940000174369 ENSGT00530000063873.B ENSGT00940000159069 ENSGT00950000183019.f.b.b.c Denticle herring MODERN SPECIES 19 ENSDCDG00000003126 ENSDCDG00000003111 ENSDCDG00000003090 ENSDCDG00000003048 ENSDCDG00000002973 ENSDCDG00000002913 ENSDCDG00000014771 ENSDCDG00000014768 ENSDCDG00000014763 ENSDCDG00000014757 ENSDCDG00000014690 ANKZF1 (ENSDCDG00000014662) ENSDCDG00000014295 ENSDCDG00000012767 ENSDCDG00000012725 #21 SUMO3 (ENSDCDG00000012626) #22 TSPEAR (ENSDCDG00000012600) #24 ENSDCDG00000012586 bmpr2b (ENSDCDG00000007782) fam117bb (ENSDCDG00000007713) ENSDCDG00000007700 SUMO1 (ENSDCDG00000007696) FZD7 (ENSDCDG00000007689) ALS2 (ENSDCDG00000007638) MPP4 (ENSDCDG00000007623) tmem237a (ENSDCDG00000007617) abi2a (ENSDCDG00000007413) RAPH1 (ENSDCDG00000005222) ENSDCDG00000005185 ENSDCDG00000005183 FER1L6 (ENSDCDG00000005115) Atlantic herring DUPLICATION Atlantic herring DUPLICATION Atlantic herring MODERN SPECIES 18 myh9a (ENSCHAG00000022996) PLPPR2 (ENSCHAG00000022887) ENSCHAG00000017807 pik3r6a (ENSCHAG00000017633) PIK3R6 (ENSCHAG00000017618) PIK3R5 (ENSCHAG00000017547) ntn1a (ENSCHAG00000017484) stx8 (ENSCHAG00000017465) ENSCHAG00000017333 CFAP52 (ENSCHAG00000017251) ENSCHAG00000017154 MCHR1 (ENSCHAG00000017115) ENSCHAG00000017096 mif4gda (ENSCHAG00000017014) gga3a (ENSCHAG00000016825) ENSCHAG00000016782 #22 jpt1a (ENSCHAG00000016774) ENSCHAG00000016748 ENSCHAG00000016720 ENSCHAG00000016698 ENSCHAG00000016668 ENSCHAG00000016636 septin9b (ENSCHAG00000015484) ENSCHAG00000015241 ccdc40 (ENSCHAG00000015079) CARD14 (ENSCHAG00000014984) rhbdl3 (ENSCHAG00000014902) ccdc40 (ENSCHAG00000014775) ENSCHAG00000014755 ENSCHAG00000014742 CBX4 (ENSCHAG00000014731) Atlantic herring MODERN SPECIES 11 ENSCHAG00000000152 ENSCHAG00000000157 dcbld2 (ENSCHAG00000000176) tmem30c (ENSCHAG00000000211) cmss1 (ENSCHAG00000000225) ENSCHAG00000000249 DOP1B (ENSCHAG00000000353) ENSCHAG00000000492 ENSCHAG00000000546 ENSCHAG00000000691 ENSCHAG00000000999 LRRC8C (ENSCHAG00000001029) ENSCHAG00000001064 glb1l (ENSCHAG00000001493) ENSCHAG00000006037 #21 ENSCHAG00000006121 #22 ENSCHAG00000006214 ENSCHAG00000006298 ENSCHAG00000006458 ENSCHAG00000006503 ENSCHAG00000006737 ENSCHAG00000006867 ENSCHAG00000006899 ENSCHAG00000006919 ENSCHAG00000006948 ENSCHAG00000006956 ENSCHAG00000006999 ENSCHAG00000007036 ENSCHAG00000007070 ENSCHAG00000007105 spryd7b (ENSCHAG00000007123) Atlantic herring MODERN SPECIES 13 cdk5r2a (ENSCHAG00000002014) cryba2a (ENSCHAG00000001996) KALRN (ENSCHAG00000001610) ENSCHAG00000001528 CCDC14 (ENSCHAG00000001479) iqcb1 (ENSCHAG00000001386) TBX19 (ENSCHAG00000001271) ENSCHAG00000001250 ENSCHAG00000001233 trpc7a (ENSCHAG00000000797) ENSCHAG00000000561 ENSCHAG00000023977 atg9a (ENSCHAG00000023956) ENSCHAG00000023451 pttg1ipa (ENSCHAG00000023421) sumo3a (ENSCHAG00000023394) #22 ube2g2 (ENSCHAG00000023377) #23 TSPEAR (ENSCHAG00000023372) #24 ENSCHAG00000023311 meig1 (ENSCHAG00000023306) tmem243b (ENSCHAG00000023300) dmtf1 (ENSCHAG00000023288) TSPAN9 (ENSCHAG00000023272) mical3b (ENSCHAG00000023196) svopl (ENSCHAG00000023176) parp12b (ENSCHAG00000023169) kics2 (ENSCHAG00000023165) srgap1b (ENSCHAG00000021290) avpr1ab (ENSCHAG00000020900) dennd6b (ENSCHAG00000020340) ankrd16 (ENSCHAG00000020318) Euteleosteomorpha DUPLICATION Euteleosteomorpha DUPLICATION Euteleosteomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.j.a #22 Protacanthopterygii ANCESTRAL SPECIES 27 ENSGT00980000198666 ENSGT00390000009178 ENSGT00940000172275 ENSGT00390000019377.b.e ENSGT00390000012496.a.c ENSGT00940000163999.a.c.b.b ENSGT00940000161095 ENSGT00940000163999.a.c.a.b ENSGT01090000260082.d.a.b.q.a ENSGT00940000155107.b.a ENSGT00940000155063.a.b ENSGT00440000033329.b.a.a.c ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.j.a #22 ENSGT00950000182895.a.b.v.k #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00950000183009.db.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183052.b.c.b.a.e.a Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.j.a.a #22 Salmoninae_a ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.j.a.a #22 Oncorhynchus ANCESTRAL SPECIES 70 ENSGT00390000012496.a.c.b.b.a ENSGT00940000164480.a.a.g.a.a.b ENSGT00390000009178.h ENSGT00940000163999.a.c.a.b.a.a.b ENSGT00940000163999.a.c.a.b.a.b.e.a ENSGT01090000260082.d.a.b.q.a.a ENSGT00940000155107.b.a.e ENSGT00940000155063.a.b.f ENSGT00440000033329.b.a.a.c.a ENSGT00390000014839.b.e ENSGT00940000164909.e.b.j ENSGT00950000182895.a.b.v.j.a.a #22 ENSGT00510000047718.c #24 ENSGT00940000157267.a ENSGT00390000011514 ENSGT00940000155489.a.d ENSGT00950000183009.db.a.b.a ENSGT00940000155099.k.b.e.a ENSGT00390000000673.a.b.c ENSGT00940000163513.d ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.a.b ENSGT00390000004600.b.a.h ENSGT00950000183071.a.a.b.c.a.b.a ENSGT00940000166763.d.a ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.a.a.a.b.b.d ENSGT00940000166078.c ENSGT00550000075086.d Oncorhynchus_a ANCESTRAL SPECIES 86 ENSGT00390000019377.b.e.d.a.b ENSGT00390000012496.a.c.b.b.a ENSGT00940000164480.a.a.g.a.a.b ENSGT00390000009178.h ENSGT00940000163999.a.c.a.b.a.a.b ENSGT00940000163999.a.c.a.b.a.b.e.a ENSGT00940000163999.a.c.a.b.a.b.f ENSGT01090000260082.d.a.b.q.a.a ENSGT00940000155107.b.a.e ENSGT00940000155063.a.b.f ENSGT00440000033329.b.a.a.c.a ENSGT00390000014839.b.f.b ENSGT00940000164909.e.b.i ENSGT00950000182895.a.b.v.j.a.a #22 ENSGT00510000047718.c #24 ENSGT00940000157267.a ENSGT00390000011514 ENSGT00940000155489.a.c.a ENSGT00950000183009.db.a.b.a ENSGT00940000155099.k.b.e.a ENSGT00390000000673.a.b.c ENSGT00940000163513.d ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.a.b ENSGT00390000004600.b.a.h ENSGT00950000183071.a.a.b.c.a.b.a ENSGT00940000166763.d.a ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.a.a.a.b.b.d ENSGT00940000166078.c.c ENSGT00550000075086.d Coho salmon MODERN SPECIES 7 ENSOKIG00005013239 ENSOKIG00005013258 tlr22 (ENSOKIG00005013441) ENSOKIG00005013447 ENSOKIG00005013454 ENSOKIG00005013460 ENSOKIG00005013465 ENSOKIG00005013499 ENSOKIG00005013915 ENSOKIG00005016118 ENSOKIG00005016124 ENSOKIG00005016200 ENSOKIG00005016937 ATG9A (ENSOKIG00005016974) ENSOKIG00005017083 SUMO3 (ENSOKIG00005017139) #22 TSPEAR (ENSOKIG00005017150) #24 ENSOKIG00005017173 zgc:112416 (ENSOKIG00005017214) ENSOKIG00005017302 TRA2B (ENSOKIG00005017348) ENSOKIG00005017445 ENSOKIG00005017465 ENSOKIG00005017581 ENSOKIG00005017591 ENSOKIG00005017601 ENSOKIG00005017619 UGGT1 (ENSOKIG00005017654) hs6st1b (ENSOKIG00005017860) otomp (ENSOKIG00005017882) ENSOKIG00005017898 Salmo ANCESTRAL SPECIES 41 ENSGT00940000153931.b.b.f.a.a ENSGT00390000013817.c ENSGT00940000172275 ENSGT00390000019377.b.e.d.b ENSGT00390000012496.a.c.b ENSGT00940000164480.a.a.g.a.b ENSGT00980000198666 ENSGT00390000009178.g ENSGT01090000260082.d.a.b.q.a.b ENSGT00940000155107.b.a.f ENSGT00940000155063.a.b.c ENSGT00440000033329.b.a.a.c.b ENSGT00390000014839.b.f.a ENSGT00940000164909.e.b.k ENSGT00390000004977.d.b.f #21 ENSGT00950000182895.a.b.v.j.a.a #22 ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.a.g.b.a ENSGT00540000073890.q.a ENSGT01060000250127 ENSGT00940000157267.b ENSGT00940000155489.a.c.b ENSGT00950000183009.db.a.a.b ENSGT00940000155099.k.b.e.b.b ENSGT00390000000673.a.b.d ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.a.b ENSGT00940000156207.b.c.a.a.b.a ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.a.a ENSGT00390000004600.b.a.g ENSGT00950000183071.a.a.b.c.a.b ENSGT00940000166763.d River trout MODERN SPECIES 32 abcc4 (ENSSTUG00000047308) ENSSTUG00000047234 ENSSTUG00000047226 ENSSTUG00000047139 ENSSTUG00000047123 ENSSTUG00000047116 ENSSTUG00000047113 ENSSTUG00000046743 ENSSTUG00000046228 ENSSTUG00000046182 ENSSTUG00000045384 ENSSTUG00000045341 atg9a (ENSSTUG00000045300) ENSSTUG00000044215 ENSSTUG00000044174 #21 ENSSTUG00000044153 #22 ENSSTUG00000043758 ENSSTUG00000043721 TRA2B (ENSSTUG00000043611) ENSSTUG00000043590 ENSSTUG00000043388 ENSSTUG00000043365 ENSSTUG00000043355 ENSSTUG00000043340 ENSSTUG00000043329 uggt1 (ENSSTUG00000042640) HS6ST1 (ENSSTUG00000042476) otomp (ENSSTUG00000042353) ENSSTUG00000042317 acvr1l (ENSSTUG00000042270) d2hgdh (ENSSTUG00000042238) Salmoninae ANCESTRAL SPECIES 495 ENSGT00440000033329.b.a.a.c.b ENSGT00390000014839.b.f ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.j.a.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267.a ENSGT00390000011514 ENSGT00940000155489.a.d ENSGT00950000183009.db.a.a.a ENSGT00940000155099.k.b.e.b.a ENSGT00390000000673.a.b.c ENSGT00940000157267.b ENSGT00730000110871.a.a.a.b ENSGT00940000155489.a.c ENSGT00950000183009.db.a.a.b ENSGT00940000155099.k.b.e.b.b ENSGT00390000000673.a.b.d ENSGT00950000183052.b.c.b.a.e.a ENSGT00940000156207.b.c.a.a.b.a Huchen MODERN SPECIES 358 ENSHHUG00000010227 ENSHHUG00000010219 #21 ENSHHUG00000010007 #22 ENSHHUG00000009995 #24 ENSHHUG00000009929 ENSHHUG00000009808 slc13a3 (ENSHHUG00000009750) mc3r (ENSHHUG00000009698) tcf15 (ENSHHUG00000009689) SRXN1 (ENSHHUG00000009684) scrt2 (ENSHHUG00000009674) slc52a3 (ENSHHUG00000009650) ENSHHUG00000009628 peds1 (ENSHHUG00000009605) cebpb (ENSHHUG00000009597) ptpn1 (ENSHHUG00000009570) KLHL12 (ENSHHUG00000009536) ENSHHUG00000009513 Salmoninae_a ANCESTRAL SPECIES 49 ENSGT00390000019377.b.e.c ENSGT00390000012496.a.c.b ENSGT00940000164480.a.a.g.a.a.b ENSGT00940000164480.a.a.g.a.a.a ENSGT00940000164246.C.d.b.b ENSGT00390000009178.g ENSGT01090000260082.d.a.b.q.a.b ENSGT00940000155107.b.a.f ENSGT00940000155063.a.b ENSGT00440000033329.b.a.a.c.b ENSGT00390000014839.b.f.a ENSGT00940000176997 ENSGT00390000014839.b.f.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.j.a.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267.a ENSGT00390000011514 ENSGT00730000110871.a.a.a.b ENSGT00940000155489.a.d ENSGT00950000183009.db.a.a.a ENSGT00940000155099.k.b.e.b.a ENSGT00390000000673.a.b.c ENSGT00940000163513.d ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.a.b ENSGT00390000004600.b.a.h ENSGT00950000183071.a.a.b.c.a.b ENSGT00940000166763.d ENSGT00940000166078.c ENSGT00550000075086.d Oncorhynchus ANCESTRAL SPECIES 49 ENSGT00390000019377.b.e.c ENSGT00390000019377.b.e.d.a.b ENSGT00390000012496.a.c.b.b.b ENSGT00940000164480.a.a.g.a.a.a ENSGT00940000164246.C.d.b.b ENSGT00980000198666 ENSGT00390000009178.g ENSGT01090000260082.d.a.b.q.a.b ENSGT00940000155107.b.a.f ENSGT00940000155063.a.b.e ENSGT00440000033329.b.a.a.c.b ENSGT00390000014839.b.f.a ENSGT00390000014839.b.f.b ENSGT00940000164909.e.b.i ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.j.a.b #22 ENSGT00940000157267.b ENSGT00730000110871.a.a.a.b ENSGT00940000155489.a.c.b ENSGT00950000183009.db.a.b.b ENSGT00940000155099.k.b.e.b.b ENSGT00390000000673.a.b.d ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.a.b ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.b ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.a.a ENSGT00390000004600.b.a.g ENSGT00950000183071.a.a.b.c.a.b.b ENSGT00940000166763.d.b ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.a.a.a.b.b.c ENSGT00940000166078.d ENSGT00550000075086.c Oncorhynchus_a ANCESTRAL SPECIES 6 ENSGT00390000013817.d ENSGT00940000158283 ENSGT00390000019377.b.e.c ENSGT00390000019377.b.e.d.a.a ENSGT00390000012496.a.c.b.b.b ENSGT00940000164480.a.a.g.b ENSGT00980000198666 ENSGT00390000009178.g ENSGT01090000260082.d.a.b.q.a.b ENSGT00940000155107.b.a.f ENSGT00940000155063.a.b.e ENSGT00440000033329.b.a.a.c.b ENSGT00390000014839.b.f.a ENSGT00940000176997 ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.j.a.b #22 ENSGT00940000157267.b ENSGT00730000110871.a.a.a.b ENSGT00940000155489.a.c.b ENSGT00950000183009.db.a.b.b ENSGT00940000155099.k.b.e.b.b ENSGT00390000000673.a.b.d ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.a.a ENSGT00390000004600.b.a.g ENSGT00950000183071.a.a.b.c.a.b.b ENSGT00940000166763.d.b ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.a.a.a.b.b.c ENSGT00940000166078.d ENSGT00550000075086.c ENSGT00940000156569.a.b.a.e ENSGT00940000160480.c.b.c Chinook salmon DUPLICATION Chinook salmon MODERN SPECIES 5 ENSOTSG00005035925 abcc4 (ENSOTSG00005027263) abcc4 (ENSOTSG00005026793) timmdc1 (ENSOTSG00005026791) poglut1 (ENSOTSG00005026614) ENSOTSG00005026612 VANGL1 (ENSOTSG00005026610) ENSOTSG00005026609 ENSOTSG00005026608 ENSOTSG00005026607 tlr22 (ENSOTSG00005026606) ENSOTSG00005023952 ENSOTSG00005023916 ENSOTSG00005022693 ENSOTSG00005022691 ENSOTSG00005022655 #22 ENSOTSG00005022654 #24 rassf6 (ENSOTSG00005022652) ENSOTSG00005022651 ENSOTSG00005022650 ENSOTSG00005022649 TRA2B (ENSOTSG00005022648) ENSOTSG00005022645 ENSOTSG00005022594 ENSOTSG00005022591 ENSOTSG00005022588 ENSOTSG00005022583 ENSOTSG00005022580 uggt1 (ENSOTSG00005022205) hs6st1b (ENSOTSG00005022195) otomp (ENSOTSG00005022194) Chinook salmon MODERN SPECIES 31 ENSOTSG00005007304 ENSOTSG00005007301 DBI (ENSOTSG00005007296) STEAP3 (ENSOTSG00005007293) ENSOTSG00005007292 scn1lab (ENSOTSG00005007291) ENSOTSG00005007290 ENSOTSG00005007288 ENSOTSG00005007287 B3GALT1 (ENSOTSG00005007286) ENSOTSG00005007254 ENSOTSG00005007248 ENSOTSG00005041199 ENSOTSG00005041197 ENSOTSG00005041196 #21 ENSOTSG00005041195 #22 ENSOTSG00005041194 pcnt (ENSOTSG00005041185) ENSOTSG00005041180 TRA2B (ENSOTSG00005041109) ENSOTSG00005041040 ENSOTSG00005041025 ENSOTSG00005041023 ENSOTSG00005041022 ENSOTSG00005041021 ENSOTSG00005041020 ENSOTSG00005041019 uggt1 (ENSOTSG00005040996) OXGR1 (ENSOTSG00005040994) ENSOTSG00005040993 dzip1 (ENSOTSG00005040992) Coho salmon MODERN SPECIES 25 ENSOKIG00005035989 POGLUT1 (ENSOKIG00005035758) ENSOKIG00005035436 VANGL1 (ENSOKIG00005035379) ENSOKIG00005035364 ENSOKIG00005035334 ENSOKIG00005034452 ENSOKIG00005033685 ENSOKIG00005033595 ENSOKIG00005031728 ENSOKIG00005031604 atg9a (ENSOKIG00005031492) ENSOKIG00005031464 ENSOKIG00005031163 ENSOKIG00005031101 #21 ENSOKIG00005031012 #22 ENSOKIG00005030481 ENSOKIG00005030068 TRA2B (ENSOKIG00005029943) ENSOKIG00005029825 ENSOKIG00005029647 ENSOKIG00005029627 ENSOKIG00005029607 ENSOKIG00005029596 ENSOKIG00005029574 uggt1 (ENSOKIG00005029368) HS6ST1 (ENSOKIG00005029331) otomp (ENSOKIG00005029296) ENSOKIG00005029264 acvr1l (ENSOKIG00005029179) d2hgdh (ENSOKIG00005029136) Salmo ANCESTRAL SPECIES 48 ENSGT00390000013817.d ENSGT00940000158283 ENSGT00390000019377.b.e.c ENSGT00390000012496.a.c.a.a ENSGT00940000164246.C.d.b.a ENSGT00390000009178.h ENSGT00940000163999.a.c.a.b.a.a.b ENSGT00940000163999.a.c.a.b.a.a.a ENSGT00940000163999.a.c.a.b.a.b ENSGT01090000260082.d.a.b.q.a.a ENSGT00940000155063.a.b.d ENSGT00440000033329.b.a.a.c.a ENSGT00390000014839.b.f.b.a ENSGT00940000164909.e.b.l ENSGT00390000004977.d.b.e #21 ENSGT00950000182895.a.b.v.j.a.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267.a ENSGT00390000011514 ENSGT00730000110871.a.a.a.b ENSGT00940000155489.a.d ENSGT00950000183009.db.a.a.a ENSGT00940000155099.k.b.e.b.a ENSGT00390000000673.a.b.c ENSGT00940000163513.d ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.a.b ENSGT00390000004600.b.a.h ENSGT00950000183071.a.a.b.c.a.a ENSGT00940000166763.c ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.a.a.a.b.b.a ENSGT00550000075086.d River trout MODERN SPECIES 36 poglut1 (ENSSTUG00000049946) ENSSTUG00000049952 VANGL1 (ENSSTUG00000049968) ENSSTUG00000049972 ENSSTUG00000049974 ENSSTUG00000049977 tlr22 (ENSSTUG00000049980) tlr22 (ENSSTUG00000049983) tlr22 (ENSSTUG00000049985) ENSSTUG00000049993 ENSSTUG00000050054 ENSSTUG00000050230 atg9a (ENSSTUG00000050237) ENSSTUG00000050258 ENSSTUG00000050304 #21 ENSSTUG00000050311 #22 TSPEAR (ENSSTUG00000050325) #24 ENSSTUG00000050347 zgc:112416 (ENSSTUG00000050353) ENSSTUG00000050361 TRA2B (ENSSTUG00000050364) ENSSTUG00000050370 ENSSTUG00000050379 ENSSTUG00000050390 ENSSTUG00000050394 ENSSTUG00000050395 uggt1 (ENSSTUG00000050440) HS6ST1 (ENSSTUG00000050637) otomp (ENSSTUG00000050639) ENSSTUG00000050641 acvr1l (ENSSTUG00000050643) Acanthomorphata ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.j.a #22 Euacanthomorphacea ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.j.a #22 Percomorphaceae ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.j.a #22 Tiger tail seahorse MODERN SPECIES 40 dhrs12 (ENSHCOG00000001796) ENSHCOG00000001804 lcp1 (ENSHCOG00000001817) cnot11 (ENSHCOG00000001826) ENSHCOG00000001864 tmem237a (ENSHCOG00000001896) ENSHCOG00000001920 klf7b (ENSHCOG00000001940) ENSHCOG00000001962 ccnyl1 (ENSHCOG00000001975) PLEKHM3 (ENSHCOG00000001992) DNAJC15 (ENSHCOG00000002001) ENSHCOG00000002008 ENSHCOG00000002029 ENSHCOG00000002045 #21 ENSHCOG00000002049 #22 FMNL2 (ENSHCOG00000002065) ENSHCOG00000002075 prpf40a (ENSHCOG00000002091) rprma (ENSHCOG00000002099) ENSHCOG00000002108 GALNT13 (ENSHCOG00000002117) KCNJ3 (ENSHCOG00000002127) ENSHCOG00000002132 Percomorphaceae_B ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.j.a #22 Percomorphaceae_C ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.j.a #22 Eupercaria ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.j.a #22 Eupecaria_A ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.j.a #22 Eupecaria_B ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.j.a #22 Perciformes ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.j.a #22 Cottioidei ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.j.a #22 Stickleback MODERN SPECIES 16 xrcc5 (ENSGACG00000006130) COL6A2 (ENSGACG00000006089) MARCHF4 (ENSGACG00000006082) SMARCAL1 (ENSGACG00000006073) nme9 (ENSGACG00000006066) zgc:162707 (ENSGACG00000006064) ehhadh (ENSGACG00000006057) tmem41aa (ENSGACG00000006043) igf2bp2a (ENSGACG00000005991) tra2b (ENSGACG00000005986) ENSGACG00000005978 ENSGACG00000005972 glb1l (ENSGACG00000005954) ENSGACG00000005949 ENSGACG00000005937 #21 ENSGACG00000005931 #22 FMNL2 (ENSGACG00000005914) prpf40a (ENSGACG00000005886) rprmb (ENSGACG00000005884) GALNT13 (ENSGACG00000005860) KCNJ3 (ENSGACG00000005851) nr4a2a (ENSGACG00000005831) ENSGACG00000005829 CYTIP (ENSGACG00000005824) ACVR1C (ENSGACG00000005819) ENSGACG00000005810 upp2 (ENSGACG00000005800) CCDC148 (ENSGACG00000005787) PKP4 (ENSGACG00000005780) dap1b (ENSGACG00000005778) TANC1 (ENSGACG00000005757) Cod MODERN SPECIES 18 tnfsf10 (ENSGMOG00000024676) MSL2 (ENSGMOG00000012945) ENSGMOG00000012930 STAG1 (ENSGMOG00000012908) ENSGMOG00000032856 ENSGMOG00000012899 ENSGMOG00000012865 ENSGMOG00000012859 ENSGMOG00000012852 ENSGMOG00000012840 ENSGMOG00000012833 ENSGMOG00000010836 atg9a (ENSGMOG00000010871) ENSGMOG00000010893 ENSGMOG00000011026 #21 ENSGMOG00000011034 #22 ENSGMOG00000011040 #24 ENSGMOG00000011053 fabp7a (ENSGMOG00000011090) fyna (ENSGMOG00000011103) marcksb (ENSGMOG00000033838) col10a1a (ENSGMOG00000011116) ENSGMOG00000011122 fhl5 (ENSGMOG00000011143) fut9a (ENSGMOG00000020540) manea (ENSGMOG00000011151) ENSGMOG00000011160 ENSGMOG00000011170 ENSGMOG00000011190 ENSGMOG00000011193 ENSGMOG00000033171 Euteleosteomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.j.b #22 Protacanthopterygii ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.j.b #22 Salmoninae ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.j.b #22 Huchen MODERN SPECIES 4428 ENSHHUG00000044530 ENSHHUG00000044536 ENSHHUG00000044539 ENSHHUG00000044561 #21 ENSHHUG00000044568 #22 TSPEAR (ENSHHUG00000044631) #24 ENSHHUG00000044638 zgc:112416 (ENSHHUG00000044669) Salmoninae_a ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.j.b #22 Salmo ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.j.b #22 Atlantic salmon MODERN SPECIES 7 ENSSSAG00000114461 ENSSSAG00000066492 ENSSSAG00000066499 ENSSSAG00000066645 ENSSSAG00000017255 ENSSSAG00000094502 ENSSSAG00000066641 ENSSSAG00000088381 ENSSSAG00000066649 ENSSSAG00000066692 ENSSSAG00000067494 ENSSSAG00000114816 ENSSSAG00000078382 ENSSSAG00000078456 ENSSSAG00000111098 #21 ENSSSAG00000078591 #22 ENSSSAG00000078597 #24 ENSSSAG00000078620 ENSSSAG00000078698 ENSSSAG00000072765 ENSSSAG00000083359 ENSSSAG00000078718 ENSSSAG00000078759 ENSSSAG00000078778 ENSSSAG00000078811 ENSSSAG00000092203 ENSSSAG00000116422 ENSSSAG00000078840 ENSSSAG00000079371 acvr1l (ENSSSAG00000079396) otomp (ENSSSAG00000103893) Acanthomorphata ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.j.b #22 Euacanthomorphacea ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.j.b #22 Percomorphaceae ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.j.b #22 Tiger tail seahorse MODERN SPECIES 204 golga5 (ENSHCOG00000019607) trip11 (ENSHCOG00000019787) fbln5 (ENSHCOG00000019807) TC2N (ENSHCOG00000019824) hs6st1b (ENSHCOG00000019856) uggt1 (ENSHCOG00000020008) ENSHCOG00000020037 ola1 (ENSHCOG00000020085) TRA2B (ENSHCOG00000020095) ENSHCOG00000020103 pcnt (ENSHCOG00000020359) atg9a (ENSHCOG00000020389) ENSHCOG00000020410 ENSHCOG00000020525 ENSHCOG00000020544 #21 ENSHCOG00000020554 #22 UTP14C (ENSHCOG00000020563) TSPEAR (ENSHCOG00000020571) #24 ENSHCOG00000020587 fabp7a (ENSHCOG00000020590) ENSHCOG00000020600 fyna (ENSHCOG00000020626) marcksb (ENSHCOG00000020632) col10a1a (ENSHCOG00000020633) fhl5 (ENSHCOG00000020655) fut9a (ENSHCOG00000020673) manea (ENSHCOG00000020684) ENSHCOG00000020697 ppp1cb (ENSHCOG00000020713) ENSHCOG00000020726 ypel5 (ENSHCOG00000020737) Euteleosteomorpha ANCESTRAL SPECIES 377 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00510000047718.c #24 ENSGT00940000157267 Protacanthopterygii ANCESTRAL SPECIES 27 ENSGT00390000009178 ENSGT00940000172275 ENSGT00390000019377.b.e ENSGT00390000012496.a.c ENSGT00940000163999.a.c.b.b ENSGT00940000161095 ENSGT00940000163999.a.c.a.b ENSGT01090000260082.d.a.b.q.a ENSGT00940000155107.b.a ENSGT00940000155063.a.b ENSGT00440000033329.b.a.a.c ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.j.a #22 ENSGT00950000182895.a.b.v.k #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00950000183009.db.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183052.b.c.b.a.e.a Northern pike MODERN SPECIES 21 SSBP4 (ENSELUG00000008998) ENSELUG00000009064 ENSELUG00000009037 poglut1 (ENSELUG00000009087) ENSELUG00000009144 VANGL1 (ENSELUG00000009195) ENSELUG00000009208 ENSELUG00000009243 tlr22 (ENSELUG00000009256) ENSELUG00000009290 ENSELUG00000009319 MAP4K4 (ENSELUG00000009520) ENSELUG00000009573 atg9a (ENSELUG00000009602) ENSELUG00000009709 #21 ENSELUG00000001518 #22 TSPEAR (ENSELUG00000009812) #24 ENSELUG00000009935 ENSELUG00000009974 ENSELUG00000010433 ENSELUG00000030506 TRA2B (ENSELUG00000010477) ENSELUG00000010520 ola1 (ENSELUG00000010548) ENSELUG00000010566 phospho2 (ENSELUG00000010608) SYAP1 (ENSELUG00000010637) txlng (ENSELUG00000010672) rbb4l (ENSELUG00000010738) ENSELUG00000026064 ZRSR2 (ENSELUG00000010776) Salmoninae ANCESTRAL SPECIES ENSGT00500000044930.e.b.b ENSGT00940000158812.j.b.a ENSGT00940000157651 ENSGT00530000063647.A.a ENSGT00940000153095.c.b ENSGT00390000006348 ENSGT00390000017606.a.b.h ENSGT00990000204633 ENSGT00390000017606.a.b.g ENSGT00940000164352.b.r ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333.b.a ENSGT00390000000204 ENSGT00950000182895.a.b.v.k #22 ENSGT00950000182895.b.b.h ##22 ENSGT00940000164904.b ENSGT01030000235004 ENSGT00940000157195.m ENSGT00940000157598.p ENSGT00940000157598.o.a ENSGT01030000235061 ENSGT00390000013973.B.g.a.a ENSGT00390000005481.s ENSGT00940000155641.g.a ENSGT00940000156498.g.a.d ENSGT00940000153469.a.a.k ENSGT00940000156051.c.a ENSGT01050000244879.a.b.e ENSGT00940000154396.b.a.a.a Huchen DUPLICATION Huchen MODERN SPECIES 7196 ENSHHUG00000015463 ENSHHUG00000015451 #22 Huchen MODERN SPECIES 1861 noxo1a (ENSHHUG00000007962) tbl3 (ENSHHUG00000007973) rps2 (ENSHHUG00000008107) ndufb10 (ENSHHUG00000008183) RPL3L (ENSHHUG00000008253) ENSHHUG00000008479 slc25a19 (ENSHHUG00000008498) MIF4GD (ENSHHUG00000008507) mrps7 (ENSHHUG00000008527) GGA3 (ENSHHUG00000008598) NUP85 (ENSHHUG00000009307) ENSHHUG00000009420 #22 ENSHHUG00000009432 ENSHHUG00000009448 ftr67 (ENSHHUG00000009462) Salmoninae_a ANCESTRAL SPECIES 52 ENSGT00940000153432.A.a.o.b ENSGT00390000014620.w.b ENSGT00940000157333.b.a ENSGT00390000000204 ENSGT00950000182895.a.b.v.k #22 ENSGT00940000164904.b ENSGT01030000235004 ENSGT00940000157195.m ENSGT00940000157598.p ENSGT00940000157598.o.a ENSGT01030000235061 ENSGT00390000013973.B.g.a.b ENSGT00390000005481.s ENSGT00940000155641.g.a ENSGT00940000156498.g.a.d ENSGT00940000153469.a.a.k ENSGT00940000156051.c.a ENSGT01050000244879.a.b.e ENSGT00940000154396.b.a.a.a.g.b.a ENSGT00940000155603.B Oncorhynchus DUPLICATION Oncorhynchus DUPLICATION Oncorhynchus ANCESTRAL SPECIES 44 ENSGT00940000158812.j.b.a ENSGT00940000157651.h ENSGT00940000157651.g.a ENSGT00530000063647.A.a ENSGT00940000153095.c.b ENSGT00390000006348 ENSGT00990000204633.a.a.a.a ENSGT00390000017606.a.b.h ENSGT00990000204633.a.a.a.b ENSGT00940000164352.b.r ENSGT00550000074902.p.b ENSGT00940000153432.A.a.o.b ENSGT00390000014620.w.b ENSGT00940000157333.b.a ENSGT00390000000204.q ENSGT00950000182895.a.b.v.k.c.a #22 ENSGT00940000164904.b ENSGT00990000213620 ENSGT01030000235004 ENSGT00940000157195.m.h ENSGT00940000157598.p ENSGT01030000235061 ENSGT00390000013973.B.g.a.b ENSGT00390000005481.s ENSGT00940000155641.g.a ENSGT00940000156498.g.a.d ENSGT00940000153469.a.a.k ENSGT00940000156051.c.a.e ENSGT01050000244879.a.b.e.k ENSGT00940000154396.b.a.a.a.g.b.a ENSGT00940000154396.b.a.a.a.g.b.b.a Rainbow trout DUPLICATION Rainbow trout MODERN SPECIES 3 noxo1a (ENSOMYG00000019561) ENSOMYG00000071972 tbl3 (ENSOMYG00000059941) ENSOMYG00000020018 RPS2 (ENSOMYG00000022358) nduba (ENSOMYG00000032689) ENSOMYG00000020073 RPL3L (ENSOMYG00000032714) ENSOMYG00000049384 SLC25A19 (ENSOMYG00000056213) MIF4GD (ENSOMYG00000072304) MRPS7 (ENSOMYG00000020138) GGA3 (ENSOMYG00000032939) NUP85 (ENSOMYG00000032032) jpt1b (ENSOMYG00000067278) sumo2 (ENSOMYG00000032420) #22 ENSOMYG00000055068 ENSOMYG00000017402 ENSOMYG00000034358 ENSOMYG00000063785 ENSOMYG00000061841 ENSOMYG00000051186 ENSOMYG00000077393 ENSOMYG00000054240 ENSOMYG00000011832 MOSMO (ENSOMYG00000011740) ENSOMYG00000050735 SDR42E2 (ENSOMYG00000058631) ENSOMYG00000011720 mfsd13al (ENSOMYG00000011712) kdelr2a (ENSOMYG00000011703) Rainbow trout MODERN SPECIES 4 drc3 (ENSOMYG00000019493) GID4 (ENSOMYG00000035001) noxo1a (ENSOMYG00000064359) tbl3 (ENSOMYG00000019722) ENSOMYG00000032632 RPS2 (ENSOMYG00000011211) nduba (ENSOMYG00000019620) RPL3L (ENSOMYG00000020051) ENSOMYG00000032725 ENSOMYG00000020101 SLC25A19 (ENSOMYG00000020121) MIF4GD (ENSOMYG00000032733) MRPS7 (ENSOMYG00000032763) ENSOMYG00000031890 NUP85 (ENSOMYG00000033670) sumo2 (ENSOMYG00000034243) #22 jpt1b (ENSOMYG00000032596) ENSOMYG00000034384 ENSOMYG00000046057 ENSOMYG00000025310 ENSOMYG00000034436 zgc:153240 (ENSOMYG00000034444) rhot1a (ENSOMYG00000034480) ENSOMYG00000034542 ENSOMYG00000034616 ENSOMYG00000034657 rfx1a (ENSOMYG00000034707) rln3a (ENSOMYG00000034796) ENSOMYG00000034824 ENSOMYG00000034914 ENSOMYG00000034947 Oncorhynchus_a ANCESTRAL SPECIES 434 ENSGT00940000157333.b.a ENSGT00390000000204.q ENSGT00950000182895.a.b.v.k.c.a #22 Coho salmon MODERN SPECIES 35 drc3 (ENSOKIG00005042724) GID4 (ENSOKIG00005042695) noxo1a (ENSOKIG00005042666) tbl3 (ENSOKIG00005040683) RNF151 (ENSOKIG00005040458) rps2 (ENSOKIG00005040373) ndufb10 (ENSOKIG00005040303) ENSOKIG00005040262 RPL3L (ENSOKIG00005040174) ENSOKIG00005040148 slc25a19 (ENSOKIG00005040130) mif4gda (ENSOKIG00005040099) mrps7 (ENSOKIG00005040051) GGA3 (ENSOKIG00005048124) NUP85 (ENSOKIG00005047755) ENSOKIG00005047662 #22 ENSOKIG00005047640 ENSOKIG00005047626 SEPTIN9 (ENSOKIG00005047513) ENSOKIG00005047483 ENSOKIG00005047474 ENSOKIG00005047464 TOM1L2 (ENSOKIG00005047460) srebf1 (ENSOKIG00005046541) ENSOKIG00005046462 nptx2a (ENSOKIG00005046452) bri3 (ENSOKIG00005046449) TECPR1 (ENSOKIG00005046406) lmtk2 (ENSOKIG00005046371) pvalb5 (ENSOKIG00005046360) pvalb1 (ENSOKIG00005046351) Oncorhynchus ANCESTRAL SPECIES 231 ENSGT00940000153432.A.a.p ENSGT00390000014620.x ENSGT00940000157333.b.b ENSGT00390000000204.r ENSGT00950000182895.a.b.v.k.c.b #22 Oncorhynchus_a ANCESTRAL SPECIES 355 ENSGT00390000000204.r ENSGT00950000182895.a.b.v.k.c.b #22 ENSGT00940000164904.b ENSGT01030000235004 ENSGT00940000157195.m.h Coho salmon MODERN SPECIES 269 GID4 (ENSOKIG00005042324) noxo1a (ENSOKIG00005042368) tbl3 (ENSOKIG00005042454) ENSOKIG00005043734 RNF151 (ENSOKIG00005043743) RPS2 (ENSOKIG00005043761) ENSOKIG00005043806 RPL3L (ENSOKIG00005043876) ENSOKIG00005043920 ENSOKIG00005043944 SLC25A19 (ENSOKIG00005043967) ENSOKIG00005043988 ENSOKIG00005044023 #22 ENSOKIG00005044128 ENSOKIG00005044153 Oncorhynchus ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.k.d #22 Oncorhynchus_a ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.k.d #22 Chinook salmon MODERN SPECIES 22 ENSOTSG00005001447 ENSOTSG00005001448 ENSOTSG00005001450 ENSOTSG00005001453 zgc:172295 (ENSOTSG00005001460) ENSOTSG00005001463 serpine3 (ENSOTSG00005001464) nup35 (ENSOTSG00005001467) ENSOTSG00005001469 fgf16 (ENSOTSG00005001473) fgf16 (ENSOTSG00005001475) ENSOTSG00005001476 mnx2a (ENSOTSG00005001478) ENSOTSG00005001481 ENSOTSG00005001483 ENSOTSG00005001489 #22 xrcc5 (ENSOTSG00005001555) Salmo ANCESTRAL SPECIES 161 ENSGT00940000159298.b ENSGT00500000044930.e.b.b ENSGT01100000263547.a.b.b.a.a.a.b.b ENSGT00940000158812.j.b.a.a ENSGT00940000157651.e ENSGT00940000153095.c.a ENSGT00390000006348.v ENSGT00990000204633.b ENSGT00390000017606.a.b.h ENSGT00940000164352.b.r.b ENSGT00550000074902.r ENSGT00940000153432.A.a.o.a ENSGT00390000014620.w.a ENSGT00940000157333.b.a.b ENSGT00390000000204.o ENSGT00950000182895.a.b.v.k #22 Atlantic salmon DUPLICATION Atlantic salmon MODERN SPECIES 23 senp3a (ENSSSAG00000054757) eif4a1b (ENSSSAG00000054709) sox19a (ENSSSAG00000054754) ENSSSAG00000109134 tm4sf21a (ENSSSAG00000054686) slc25a15b (ENSSSAG00000054680) RT31 (ENSSSAG00000054675) FOXO1 (ENSSSAG00000054669) ENSSSAG00000054662 ENSSSAG00000091608 usf1l (ENSSSAG00000054626) ENSSSAG00000090337 ENSSSAG00000095992 bco2b (ENSSSAG00000054162) ENSSSAG00000054131 ENSSSAG00000105818 #22 ENSSSAG00000054109 ENSSSAG00000054054 ENSSSAG00000082517 zgc:158412 (ENSSSAG00000054047) atf5a (ENSSSAG00000054038) ENSSSAG00000053993 arcn1a (ENSSSAG00000053935) hmbsa (ENSSSAG00000053897) c2cd2l (ENSSSAG00000053874) dpagt1 (ENSSSAG00000053857) hinfp (ENSSSAG00000053572) ENSSSAG00000107243 nherf4b (ENSSSAG00000046619) atp5l (ENSSSAG00000046603) ift22 (ENSSSAG00000046594) Atlantic salmon MODERN SPECIES 22 TOM1L2 (ENSSSAG00000099383) drc3 (ENSSSAG00000002514) noxo1a (ENSSSAG00000096517) tbl3 (ENSSSAG00000099710) ENSSSAG00000004268 ENSSSAG00000004292 NDUFB10 (ENSSSAG00000084668) rpl3l (ENSSSAG00000001684) ENSSSAG00000004459 ENSSSAG00000104494 SLC25A19 (ENSSSAG00000092872) MIF4GD (ENSSSAG00000086423) RT07 (ENSSSAG00000117307) GGA3 (ENSSSAG00000113978) NUP85 (ENSSSAG00000001381) SUMO2 (ENSSSAG00000005757) #22 ENSSSAG00000084392 ENSSSAG00000108256 ENSSSAG00000082746 ENSSSAG00000001037 ENSSSAG00000118062 ENSSSAG00000000948 ENSSSAG00000000943 zgc:153240 (ENSSSAG00000000925) ENSSSAG00000088970 rhot1a (ENSSSAG00000046570) ENSSSAG00000042346 ENSSSAG00000042368 ENSSSAG00000042417 rfx1 (ENSSSAG00000042502) ENSSSAG00000115094 Atlantic salmon MODERN SPECIES 2 ENSSSAG00000120691 ENSSSAG00000041629 ENSSSAG00000040195 ENSSSAG00000106260 ENSSSAG00000040133 ENSSSAG00000083596 ppp6c (ENSSSAG00000040088) SCAI (ENSSSAG00000119979) ARP5L (ENSSSAG00000039245) ENSSSAG00000071079 ENSSSAG00000081878 ENSSSAG00000088101 ENSSSAG00000089403 ENSSSAG00000071098 ENSSSAG00000071115 ENSSSAG00000094554 #22 ENSSSAG00000098254 ENSSSAG00000102591 ENSSSAG00000086537 ENSSSAG00000004178 ENSSSAG00000004200 ENSSSAG00000004245 ENSSSAG00000004269 ENSSSAG00000096678 ENSSSAG00000004379 ENSSSAG00000004840 ENSSSAG00000112659 ENSSSAG00000114426 ppiab (ENSSSAG00000006931) ENSSSAG00000006939 OGDH (ENSSSAG00000007455) Acanthomorphata ANCESTRAL SPECIES 63 ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000011514 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a ENSGT00390000016054.a ENSGT00940000154644.jb.b ENSGT00530000063883 ENSGT00940000154800.k.a ENSGT00950000182836.a Cod MODERN SPECIES 12 bbs5 (ENSGMOG00000002910) ENSGMOG00000002940 ENSGMOG00000003008 zgc:172182 (ENSGMOG00000003120) lrp2a (ENSGMOG00000003139) rdh1 (ENSGMOG00000027878) ENSGMOG00000003318 ENSGMOG00000034141 ENSGMOG00000019323 ENSGMOG00000019314 ENSGMOG00000025683 ENSGMOG00000019299 glb1l (ENSGMOG00000019292) ENSGMOG00000019287 ENSGMOG00000019283 ENSGMOG00000019278 #22 FMNL2 (ENSGMOG00000019257) prpf40a (ENSGMOG00000019237) RPRM (ENSGMOG00000020310) GALNT13 (ENSGMOG00000019228) KCNJ3 (ENSGMOG00000019224) ENSGMOG00000024637 nr4a2a (ENSGMOG00000019215) GALNT5 (ENSGMOG00000035612) ACVR1C (ENSGMOG00000019193) ENSGMOG00000019186 UPP2 (ENSGMOG00000019169) CCDC148 (ENSGMOG00000019161) PKP4 (ENSGMOG00000027464) ENSGMOG00000010353 TANC1 (ENSGMOG00000023034) Euacanthomorphacea ANCESTRAL SPECIES 11 ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000011514 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00530000063883 ENSGT00940000154800.k.a ENSGT00950000182836.a Percomorphaceae ANCESTRAL SPECIES 13 ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000011514 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00940000154800.k.a ENSGT00950000182836.a ENSGT00390000009189 Percomorphaceae_B ANCESTRAL SPECIES 11 ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000011514 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT01090000260229 ENSGT00990000204856 ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00940000154800.k.a Ovalentaria ANCESTRAL SPECIES 10 ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000011514 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT01090000260229 ENSGT00990000204856 ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00530000063883 Atherinomorphae ANCESTRAL SPECIES 13 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000177394 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00940000159241.r ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A ENSGT00940000155773.b Oryzias ANCESTRAL SPECIES 3 ENSGT00950000183049.C.a.b ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a.e.b ENSGT00940000155095.i.a.e.a ENSGT00940000155095.i.a.f ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00530000063883 ENSGT00940000154800.k.a Oryzias_a ANCESTRAL SPECIES 11 ENSGT00950000183049.C.a.b ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a.e.b ENSGT00940000155095.i.a.e.a ENSGT00940000155095.i.a.f ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00530000063883 ENSGT00940000154800.k.a Chinese medaka MODERN SPECIES 21 crlf1a (ENSOSIG00000004712) keap1a (ENSOSIG00000004741) ENSOSIG00000004828 ELL (ENSOSIG00000006770) d2hgdh (ENSOSIG00000006775) acvr1l (ENSOSIG00000006777) otomp (ENSOSIG00000006781) hs6st1b (ENSOSIG00000006785) uggt1 (ENSOSIG00000006789) ola1 (ENSOSIG00000006873) ENSOSIG00000006892 ENSOSIG00000006900 atg9a (ENSOSIG00000006904) ENSOSIG00000006912 ENSOSIG00000007230 #21 sumo3a (ENSOSIG00000007235) #22 TSPEAR (ENSOSIG00000007399) #24 ENSOSIG00000007401 fabp7a (ENSOSIG00000007402) ENSOSIG00000007407 fyna (ENSOSIG00000007417) marcksb (ENSOSIG00000008935) col10a1a (ENSOSIG00000008936) fhl5 (ENSOSIG00000008938) FUT9 (ENSOSIG00000008942) FUT9 (ENSOSIG00000008944) fut9a (ENSOSIG00000008945) manea (ENSOSIG00000008947) ppp1cb (ENSOSIG00000008961) ENSOSIG00000010978 ypel5 (ENSOSIG00000010979) Japanese Medaka HdrR MODERN SPECIES 14 d2hgdh (ENSORLG00000013844) otomp (ENSORLG00000013815) acvr1l (ENSORLG00000013834) ENSORLG00000027515 hs6st1b (ENSORLG00000013805) uggt1 (ENSORLG00000013749) ENSORLG00000013706 ola1 (ENSORLG00000013788) ENSORLG00000013780 ENSORLG00000013689 pcnt (ENSORLG00000013666) atg9a (ENSORLG00000013642) ENSORLG00000027840 ENSORLG00000013589 ENSORLG00000028257 #21 sumo3a (ENSORLG00000013523) #22 ENSORLG00000013516 #24 ENSORLG00000013504 fabp7a (ENSORLG00000013475) ENSORLG00000013462 fyna (ENSORLG00000013453) marcksb (ENSORLG00000013439) col10a1a (ENSORLG00000013436) fhl5 (ENSORLG00000013430) fut9c (ENSORLG00000013390) fut9b (ENSORLG00000013385) fut9a (ENSORLG00000013380) manea (ENSORLG00000013371) ppp1cb (ENSORLG00000013357) ENSORLG00000013346 ypel5 (ENSORLG00000013343) Cyprinodontiformes ANCESTRAL SPECIES 15 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000177394 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00940000159241.r ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT01030000235131 ENSGT00940000161094 ENSGT00940000153988.A ENSGT00940000155773.b Aplocheiloidei ANCESTRAL SPECIES 15 ENSGT00950000183049.C.a.b ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT01090000260229 ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a.f.b ENSGT00940000155095.i.a.f.a ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00940000154800.k.a ENSGT00950000182836.a ENSGT00390000009189 Turquoise killifish DUPLICATION Turquoise killifish MODERN SPECIES 1623 COL6A2 (ENSNFUG00015024962) DNAL1 (ENSNFUG00015024954) MARCH4 (ENSNFUG00015024950) SMARCAL1 (ENSNFUG00015024913) nme9 (ENSNFUG00015024888) zgc:162707 (ENSNFUG00015024880) ehhadh (ENSNFUG00015024876) TMEM41AA (ENSNFUG00015024872) IGF2BP2A (ENSNFUG00015024804) tra2b (ENSNFUG00015024781) ENSNFUG00015024694 ENSNFUG00015024684 ANKZF1 (ENSNFUG00015024679) ENSNFUG00015024604 ENSNFUG00015024585 #21 ENSNFUG00015024578 #22 ENSNFUG00015024573 FMNL2A (ENSNFUG00015024257) PRPF40A (ENSNFUG00015023839) RPRM (ENSNFUG00015023801) ENSNFUG00015023799 GALNT13 (ENSNFUG00015023778) KCNJ3 (ENSNFUG00015023774) NR4A2A (ENSNFUG00015023773) ENSNFUG00015023770 GALNT5 (ENSNFUG00015023768) CYTIP (ENSNFUG00015023764) ENSNFUG00015023761 ACVR1C (ENSNFUG00015023758) ACVR1 (ENSNFUG00015023751) ENSNFUG00015023749 Turquoise killifish MODERN SPECIES 1625 ISYNA1 (ENSNFUG00015020013) TPGS1 (ENSNFUG00015020029) CABZ01085657.1 (ENSNFUG00015020034) ENSNFUG00015020039 gna11b (ENSNFUG00015020047) ENSNFUG00015020083 PPAP2C (ENSNFUG00015020095) ENSNFUG00015020103 theg (ENSNFUG00015020107) SHDA (ENSNFUG00015020113) CCDC94 (ENSNFUG00015020119) CARTPT (ENSNFUG00015020120) MAP1S (ENSNFUG00015020125) ENSNFUG00015020141 ENSNFUG00015020211 #21 SUMO3B (ENSNFUG00015020217) #22 TSPEAR (ENSNFUG00015020224) #24 USP40 (ENSNFUG00015020236) FABP7A (ENSNFUG00015020247) ENSNFUG00015020256 ENSNFUG00015020269 fyna (ENSNFUG00015020380) MARCKSB (ENSNFUG00015022785) ENSNFUG00015022786 COL10A1 (ENSNFUG00015022787) fhl5 (ENSNFUG00015022788) fut9a (ENSNFUG00015022793) FUT9A (ENSNFUG00015022797) manea (ENSNFUG00015022810) ppp1cb (ENSNFUG00015022823) ENSNFUG00015022880 Cyprinodontoidei ANCESTRAL SPECIES 13 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000177394 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00940000159241.r ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT01030000235131 ENSGT00940000161094 ENSGT00940000153988.A ENSGT00940000155773.b Poeciliinae ANCESTRAL SPECIES 25 ENSGT01030000235116 ENSGT00940000158208.b ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000161051.a.a.a.a.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00940000159241.r ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT01030000235131 ENSGT00940000161094 ENSGT00940000153988.A ENSGT00940000155773.b Poecilia ANCESTRAL SPECIES 13 ENSGT01030000235116 ENSGT00940000158208.b ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000161051.a.a.a.a.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00940000159241.r ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT01030000235131 ENSGT00940000161094 ENSGT00940000153988.A ENSGT00940000168997 Guppy MODERN SPECIES 450 MARCHF9 (ENSPREG00000009664) SMARCAL1 (ENSPREG00000009591) ENSPREG00000009577 nme9 (ENSPREG00000009546) zgc:162707 (ENSPREG00000009511) ehhadh (ENSPREG00000009505) tmem41aa (ENSPREG00000009491) igf2bp2a (ENSPREG00000009440) tra2b (ENSPREG00000009405) ENSPREG00000009384 ENSPREG00000009375 ANKZF1 (ENSPREG00000009367) glb1l (ENSPREG00000009301) ENSPREG00000009173 ENSPREG00000009135 #21 ENSPREG00000008916 #22 FMNL2 (ENSPREG00000008811) prpf40a (ENSPREG00000008757) GALNT13 (ENSPREG00000008734) KCNJ3 (ENSPREG00000008714) nr4a2a (ENSPREG00000008698) GALNT5 (ENSPREG00000008540) CYTIP (ENSPREG00000008497) ACVR1C (ENSPREG00000008469) ENSPREG00000008402 ENSPREG00000008391 upp2 (ENSPREG00000008378) PKP4 (ENSPREG00000008285) dap1b (ENSPREG00000008260) TANC1 (ENSPREG00000008231) WDSUB1 (ENSPREG00000008209) NAME_4 ANCESTRAL SPECIES 32 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000177394 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00940000159241.r ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000160160 ENSGT00940000164733 ENSGT01030000235131 ENSGT00940000161094 ENSGT00940000153988.A Mummichog MODERN SPECIES 2402 ENSFHEG00000008422 MARCHF4 (ENSFHEG00000008402) SMARCAL1 (ENSFHEG00000008380) nme9 (ENSFHEG00000008367) zgc:162707 (ENSFHEG00000008323) ehhadh (ENSFHEG00000008315) tmem41aa (ENSFHEG00000008292) igf2bp2a (ENSFHEG00000008263) tra2b (ENSFHEG00000008203) ENSFHEG00000008189 ENSFHEG00000008172 ENSFHEG00000008104 glb1l (ENSFHEG00000008073) ENSFHEG00000007986 ENSFHEG00000007830 #21 ENSFHEG00000007817 #22 FMNL2 (ENSFHEG00000007764) prpf40a (ENSFHEG00000007602) rprmb (ENSFHEG00000007528) Ovalentaria_B ANCESTRAL SPECIES 12 ENSGT00940000157608 ENSGT00940000177394 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.u.a #22 ENSGT00950000182895.a.b.v.k #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241.r ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A ENSGT00940000178980 Cichlidae ANCESTRAL SPECIES 14 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000177394 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241.r ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000160160 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A Pseudocrenilabrinae ANCESTRAL SPECIES 15 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000177394 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241.r ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A ENSGT00940000155773.b Pseudocrenilabrinae_A ANCESTRAL SPECIES 14 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000177394 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241.r ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A ENSGT00940000155773.b Haplochromini ANCESTRAL SPECIES 19 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000177394 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241.r ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000160160 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A Haplochromini_A ANCESTRAL SPECIES 19 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000177394 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241.r ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000160160 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A Haplochromini_B ANCESTRAL SPECIES 17 ENSGT00950000183126.a.p.a.o.a ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241.r ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A ENSGT00940000155773.b Eastern happy MODERN SPECIES 7 ENSACLG00000016093 MARCHF4 (ENSACLG00000016071) SMARCAL1 (ENSACLG00000015990) nme9 (ENSACLG00000015875) zgc:162707 (ENSACLG00000015853) ehhadh (ENSACLG00000015819) tmem41aa (ENSACLG00000015796) igf2bp2a (ENSACLG00000015512) tra2b (ENSACLG00000015461) ENSACLG00000015432 ENSACLG00000015369 ANKZF1 (ENSACLG00000015301) glb1l (ENSACLG00000015236) ENSACLG00000015141 ENSACLG00000015115 #21 ENSACLG00000015103 #22 FMNL2 (ENSACLG00000014738) prpf40a (ENSACLG00000014480) rprmb (ENSACLG00000014467) GALNT13 (ENSACLG00000014387) KCNJ3 (ENSACLG00000014308) nr4a2a (ENSACLG00000014280) GALNT5 (ENSACLG00000014132) CYTIP (ENSACLG00000014105) ACVR1C (ENSACLG00000014045) ENSACLG00000013921 ENSACLG00000013824 upp2 (ENSACLG00000013866) CCDC148 (ENSACLG00000013790) PKP4 (ENSACLG00000013647) dap1b (ENSACLG00000013628) Pomacentridae ANCESTRAL SPECIES 19 ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000011514 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00530000063883 ENSGT00940000154800.k.a ENSGT00950000182836.a Bicolor damselfish MODERN SPECIES 319 hs6st1b (ENSSPAG00000021350) uggt1 (ENSSPAG00000021207) ENSSPAG00000021178 ola1 (ENSSPAG00000021138) TRA2B (ENSSPAG00000021124) ENSSPAG00000021114 pcnt (ENSSPAG00000020840) ENSSPAG00000020796 atg9a (ENSSPAG00000020756) ENSSPAG00000020738 ENSSPAG00000020682 ENSSPAG00000020659 #21 sumo3a (ENSSPAG00000020380) #22 TSPEAR (ENSSPAG00000020305) #24 ENSSPAG00000020265 fabp7a (ENSSPAG00000020252) ENSSPAG00000020243 fyna (ENSSPAG00000020207) marcksb (ENSSPAG00000020181) col10a1a (ENSSPAG00000020169) ENSSPAG00000020155 fhl5 (ENSSPAG00000020146) fut9a (ENSSPAG00000020129) manea (ENSSPAG00000020120) ppp1cb (ENSSPAG00000020109) ypel5 (ENSSPAG00000020098) lclat1 (ENSSPAG00000020081) lbh (ENSSPAG00000020068) Pomacentridae_A ANCESTRAL SPECIES 19 ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b.a ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000011514 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00530000063883 ENSGT00940000154800.k.a ENSGT00950000182836.a Amphiprion ANCESTRAL SPECIES 12 ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b.a ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000011514 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00530000063883 ENSGT00940000154800.k.a ENSGT00950000182836.a Clown anemonefish MODERN SPECIES 1261 hs6st1b (ENSAOCG00000019302) uggt1 (ENSAOCG00000019275) ENSAOCG00000002461 ENSAOCG00000019135 TRA2B (ENSAOCG00000019109) ENSAOCG00000019095 pcnt (ENSAOCG00000019038) zgc:112416 (ENSAOCG00000018529) atg9a (ENSAOCG00000018502) ENSAOCG00000018382 ENSAOCG00000018250 #21 ENSAOCG00000018240 #22 TSPEAR (ENSAOCG00000018213) #24 ENSAOCG00000018160 Percomorphaceae_C ANCESTRAL SPECIES 12 ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000011514 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT01090000260229 ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00940000154800.k.a ENSGT00950000182836.a Percomorphaceae_D ANCESTRAL SPECIES 10 ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000011514 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT01090000260229 ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00940000154800.k.a ENSGT00950000182836.a Carangaria ANCESTRAL SPECIES 10 ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000011514 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT01090000260229 ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00940000154800.k.a ENSGT00950000182836.a Carangaria_A ANCESTRAL SPECIES 4 ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000011514 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT01090000260229 ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b.d ENSGT00940000155095.i.a ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00940000154800.k.a ENSGT00950000182836.a Seriola ANCESTRAL SPECIES 3 ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000011514 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT01090000260229 ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b.d ENSGT00940000155095.i.a ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00940000154800.k.a ENSGT00950000182836.a Yellowtail amberjack MODERN SPECIES 2176 ENSSLDG00000022186 ENSSLDG00000022174 #21 ENSSLDG00000022167 #22 TSPEAR (ENSSLDG00000022148) #24 ENSSLDG00000022068 Greater amberjack MODERN SPECIES 62 ENSSDUG00000013474 d2hgdh (ENSSDUG00000013492) acvr1l (ENSSDUG00000013523) otomp (ENSSDUG00000013538) hs6st1b (ENSSDUG00000013575) uggt1 (ENSSDUG00000013603) ENSSDUG00000013686 ola1 (ENSSDUG00000013714) TRA2B (ENSSDUG00000013749) ENSSDUG00000013759 pcnt (ENSSDUG00000013810) zgc:112416 (ENSSDUG00000014069) atg9a (ENSSDUG00000014164) ENSSDUG00000014240 ENSSDUG00000014311 #21 ENSSDUG00000014318 #22 TSPEAR (ENSSDUG00000014330) #24 ENSSDUG00000014402 fabp7a (ENSSDUG00000014441) ENSSDUG00000014457 ENSSDUG00000014487 fyna (ENSSDUG00000014501) marcksb (ENSSDUG00000014545) col10a1a (ENSSDUG00000014571) ENSSDUG00000014576 fhl5 (ENSSDUG00000014607) fut9a (ENSSDUG00000014616) manea (ENSSDUG00000014623) ppp1cb (ENSSDUG00000014645) ypel5 (ENSSDUG00000014673) lclat1 (ENSSDUG00000014681) Pleuronectoidei ANCESTRAL SPECIES 5 ENSGT00390000012355.A.b ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT01090000260229 ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00940000154800.k.a ENSGT00950000182836.a Tongue sole DUPLICATION Tongue sole MODERN SPECIES 258 ENSCSEG00000007517 #22 Tongue sole MODERN SPECIES 7 IKZF2 (ENSCSEG00000011862) ERBB4 (ENSCSEG00000011796) zgc:162707 (ENSCSEG00000011776) ENSCSEG00000011771 ehhadh (ENSCSEG00000011754) tmem41aa (ENSCSEG00000011740) igf2bp2a (ENSCSEG00000011718) tra2b (ENSCSEG00000011697) ENSCSEG00000011680 ENSCSEG00000011670 glb1l (ENSCSEG00000011644) ANKZF1 (ENSCSEG00000011588) ENSCSEG00000011572 ENSCSEG00000011541 ENSCSEG00000011534 #21 ENSCSEG00000011529 #22 ENSCSEG00000011527 FMNL2 (ENSCSEG00000011354) prpf40a (ENSCSEG00000011307) rprmb (ENSCSEG00000011301) GALNT13 (ENSCSEG00000011271) KCNJ3 (ENSCSEG00000011259) nr4a2a (ENSCSEG00000011241) GALNT5 (ENSCSEG00000011146) ENSCSEG00000011130 CYTIP (ENSCSEG00000011121) ACVR1C (ENSCSEG00000011100) ENSCSEG00000011078 upp2 (ENSCSEG00000011054) CCDC148 (ENSCSEG00000011023) PKP4 (ENSCSEG00000010921) Tongue sole MODERN SPECIES ythdf2 (ENSCSEG00000002716) vgll2b (ENSCSEG00000002722) ctsl.1 (ENSCSEG00000002733) qkia (ENSCSEG00000002782) pacrg (ENSCSEG00000002791) PTAFR (ENSCSEG00000002801) kdm1a (ENSCSEG00000002808) tmem30b (ENSCSEG00000002873) TRA2B (ENSCSEG00000002877) ENSCSEG00000002888 pcnt (ENSCSEG00000002898) atg9a (ENSCSEG00000002938) mns1 (ENSCSEG00000002966) ENSCSEG00000002982 ENSCSEG00000003006 #21 SUMO3 (ENSCSEG00000003010) #22 TSPEAR (ENSCSEG00000003018) #24 ENSCSEG00000003038 fabp7a (ENSCSEG00000003055) ENSCSEG00000003061 fyna (ENSCSEG00000003064) marcksb (ENSCSEG00000003088) col10a1a (ENSCSEG00000003094) ENSCSEG00000003097 fhl5 (ENSCSEG00000003108) fut9a (ENSCSEG00000003166) manea (ENSCSEG00000003167) ppp1cb (ENSCSEG00000003172) ypel5 (ENSCSEG00000003183) lclat1 (ENSCSEG00000003184) lbh (ENSCSEG00000003194) Eupercaria DUPLICATION Eupercaria DUPLICATION Eupercaria ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.k.m.a #22 Tetraodontidae ANCESTRAL SPECIES ENSGT00940000155682.g.a ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000161051.a.a.a.a.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v.k.m.a #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241 ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00940000161094 ENSGT00940000153988.A ENSGT00940000155773.b Fugu MODERN SPECIES xrcc5 (ENSTRUG00000011292) COL6A2 (ENSTRUG00000010965) MARCHF4 (ENSTRUG00000010920) SMARCAL1 (ENSTRUG00000010701) nme9 (ENSTRUG00000010490) zgc:162707 (ENSTRUG00000027774) ehhadh (ENSTRUG00000010383) tmem41aa (ENSTRUG00000010355) igf2bp2a (ENSTRUG00000009908) ENSTRUG00000020345 fgc6ast2 (ENSTRUG00000009748) ANKZF1 (ENSTRUG00000009630) glb1l (ENSTRUG00000009251) ENSTRUG00000008967 ENSTRUG00000024914 #21 sumo3a (ENSTRUG00000025879) #22 FMNL2 (ENSTRUG00000008302) prpf40a (ENSTRUG00000007825) rprmb (ENSTRUG00000007817) GALNT13 (ENSTRUG00000007687) KCNJ3 (ENSTRUG00000007530) nr4a2a (ENSTRUG00000007433) GALNT5 (ENSTRUG00000007373) ENSTRUG00000024709 CYTIP (ENSTRUG00000007288) ACVR1C (ENSTRUG00000007134) ENSTRUG00000007007 upp2 (ENSTRUG00000006794) CCDC148 (ENSTRUG00000024154) PKP4 (ENSTRUG00000006426) dap1b (ENSTRUG00000020081) Tetraodon MODERN SPECIES 13 MARCHF4 (ENSTNIG00000016466) SMARCAL1 (ENSTNIG00000016467) nme9 (ENSTNIG00000016468) zgc:162707 (ENSTNIG00000016469) ehhadh (ENSTNIG00000016470) tmem41aa (ENSTNIG00000016471) igf2bp2a (ENSTNIG00000016472) tra2b (ENSTNIG00000000790) ENSTNIG00000016473 ENSTNIG00000016474 ANKZF1 (ENSTNIG00000016475) glb1l (ENSTNIG00000016476) ENSTNIG00000000645 ENSTNIG00000016477 ENSTNIG00000016478 #21 ENSTNIG00000016479 #22 FMNL2 (ENSTNIG00000016480) prpf40a (ENSTNIG00000016481) GALNT13 (ENSTNIG00000016482) KCNJ3 (ENSTNIG00000016483) nr4a2a (ENSTNIG00000016484) ENSTNIG00000016485 ENSTNIG00000016486 ENSTNIG00000001555 ENSTNIG00000016487 ACVR1C (ENSTNIG00000016488) ENSTNIG00000016489 upp2 (ENSTNIG00000016490) CCDC148 (ENSTNIG00000016491) PKP4 (ENSTNIG00000016492) dap1b (ENSTNIG00000001021) Eupecaria_A ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.k.m.a #22 Eupecaria_B ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.k.m.a #22 Perciformes ANCESTRAL SPECIES ENSGT00950000182895.a.b.v.k.m.a #22 Cottioidei ANCESTRAL SPECIES 14 ENSGT00940000155682.g.a ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000161051.a.a.a.a.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v.k.m.a #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00940000159241 ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00940000161094 ENSGT00940000153988.A ENSGT00940000155773.b ENSGT00940000154574.d Lumpfish MODERN SPECIES 13 MARCHF4 (ENSCLMG00005020098) SMARCAL1 (ENSCLMG00005020081) ENSCLMG00005020079 nme9 (ENSCLMG00005020077) zgc:162707 (ENSCLMG00005020075) ehhadh (ENSCLMG00005020073) tmem41aa (ENSCLMG00005020072) igf2bp2a (ENSCLMG00005020011) tra2b (ENSCLMG00005019973) ENSCLMG00005019965 ENSCLMG00005019962 ANKZF1 (ENSCLMG00005019959) glb1l (ENSCLMG00005019763) ENSCLMG00005019559 ENSCLMG00005019553 #21 ENSCLMG00005019551 #22 FMNL2 (ENSCLMG00005013134) prpf40a (ENSCLMG00005012563) rprmb (ENSCLMG00005012559) GALNT13 (ENSCLMG00005012289) KCNJ3 (ENSCLMG00005012288) nr4a2a (ENSCLMG00005012245) GALNT5 (ENSCLMG00005012243) ENSCLMG00005012242 CYTIP (ENSCLMG00005012240) ACVR1C (ENSCLMG00005012238) ENSCLMG00005012237 upp2 (ENSCLMG00005012225) CCDC148 (ENSCLMG00005012207) PKP4 (ENSCLMG00005009362) dap1b (ENSCLMG00005009337) Eupercaria ANCESTRAL SPECIES 9 ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000011514 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k.m.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT01090000260229 ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00940000154800.k.a ENSGT00950000182836.a Eupecaria_A ANCESTRAL SPECIES 10 ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000011514 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k.m.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT01090000260229 ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00940000154800.k.a ENSGT00950000182836.a Ballan wrasse MODERN SPECIES 473 hs6st1b (ENSLBEG00000018727) uggt1 (ENSLBEG00000018783) ENSLBEG00000018876 ola1 (ENSLBEG00000018929) TRA2B (ENSLBEG00000018978) ENSLBEG00000018995 pcnt (ENSLBEG00000019132) atg9a (ENSLBEG00000019551) ENSLBEG00000019614 ENSLBEG00000019731 #21 ENSLBEG00000019743 #22 TSPEAR (ENSLBEG00000019781) #24 ENSLBEG00000019893 fabp7a (ENSLBEG00000020029) Eupecaria_B ANCESTRAL SPECIES 11 ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000011514 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k.m.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT01090000260229 ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00940000154800.k.a ENSGT00950000182836.a Perciformes ANCESTRAL SPECIES 12 ENSGT00390000012355.A.b ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00390000011514 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k.m.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT01090000260229 ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00940000154800.k.a ENSGT00950000182836.a Cottioidei ANCESTRAL SPECIES 8 ENSGT00390000012355.A.b ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00390000011514 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k.m.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT01090000260229 ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00940000154800.k.a ENSGT00950000182836.a Lumpfish MODERN SPECIES 14 nsd2 (ENSCLMG00005005973) d2hgdh (ENSCLMG00005005926) acvr1l (ENSCLMG00005005907) otomp (ENSCLMG00005005903) ENSCLMG00005005902 hs6st1b (ENSCLMG00005005851) uggt1 (ENSCLMG00005005178) ENSCLMG00005005163 ola1 (ENSCLMG00005004853) TRA2B (ENSCLMG00005004845) ENSCLMG00005004839 ENSCLMG00005004838 atg9a (ENSCLMG00005004828) ENSCLMG00005003159 ENSCLMG00005003092 #21 ENSCLMG00005003024 #22 TSPEAR (ENSCLMG00005002993) #24 ENSCLMG00005002932 fabp7a (ENSCLMG00005002891) ENSCLMG00005002867 ENSCLMG00005002853 fyna (ENSCLMG00005002806) marcksb (ENSCLMG00005021741) col10a1a (ENSCLMG00005021740) ENSCLMG00005021738 fhl5 (ENSCLMG00005021737) fut9a (ENSCLMG00005021735) manea (ENSCLMG00005021734) ENSCLMG00005021600 ypel5 (ENSCLMG00005021592) lclat1 (ENSCLMG00005021591) Stickleback MODERN SPECIES 15 keap1a (ENSGACG00000009976) SSBP4 (ENSGACG00000009986) ENSGACG00000009994 ENSGACG00000009995 d2hgdh (ENSGACG00000010002) acvr1l (ENSGACG00000010017) otomp (ENSGACG00000010021) hs6st1b (ENSGACG00000010025) uggt1 (ENSGACG00000010029) ENSGACG00000010072 ola1 (ENSGACG00000010083) TRA2B (ENSGACG00000010109) ENSGACG00000010116 atg9a (ENSGACG00000010122) ENSGACG00000010131 #21 ENSGACG00000010136 #22 TSPEAR (ENSGACG00000010149) #24 ENSGACG00000010156 fabp7a (ENSGACG00000010166) fyna (ENSGACG00000010180) marcksb (ENSGACG00000010228) ENSGACG00000010231 col10a1a (ENSGACG00000010232) ENSGACG00000010236 fhl5 (ENSGACG00000010242) fut9a (ENSGACG00000010254) manea (ENSGACG00000010260) ppp1cb (ENSGACG00000010272) ENSGACG00000010331 ypel5 (ENSGACG00000010339) lclat1 (ENSGACG00000010345) Perciformes_a ANCESTRAL SPECIES 10 ENSGT00390000012355.A.b ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00390000011514 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k.m.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT01090000260229 ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00940000154800.k.a ENSGT00950000182836.a Channel bull blenny MODERN SPECIES 14 ENSCGOG00000024458 ENSCGOG00000024459 d2hgdh (ENSCGOG00000024464) acvr1l (ENSCGOG00000024483) otomp (ENSCGOG00000024508) hs6st1b (ENSCGOG00000024510) uggt1 (ENSCGOG00000024532) ENSCGOG00000024554 ola1 (ENSCGOG00000024558) TRA2B (ENSCGOG00000024584) ENSCGOG00000024585 ENSCGOG00000024592 atg9a (ENSCGOG00000024593) ENSCGOG00000024603 ENSCGOG00000024638 #21 ENSCGOG00000024639 #22 TSPEAR (ENSCGOG00000024640) #24 ENSCGOG00000024642 fabp7a (ENSCGOG00000024645) ENSCGOG00000024648 fyna (ENSCGOG00000024700) marcksb (ENSCGOG00000024730) col10a1a (ENSCGOG00000024731) ENSCGOG00000024732 fhl5 (ENSCGOG00000024733) fut9a (ENSCGOG00000024734) manea (ENSCGOG00000024735) ENSCGOG00000024736 ppp1cb (ENSCGOG00000024737) ypel5 (ENSCGOG00000024738) lclat1 (ENSCGOG00000024739) Pike perch MODERN SPECIES 24 ENSSLUG00000005431 d2hgdh (ENSSLUG00000005451) acvr1l (ENSSLUG00000005508) otomp (ENSSLUG00000005563) hs6st1b (ENSSLUG00000005585) uggt1 (ENSSLUG00000005775) ENSSLUG00000008173 ola1 (ENSSLUG00000008182) TRA2B (ENSSLUG00000008202) ENSSLUG00000008209 ENSSLUG00000008218 atg9a (ENSSLUG00000008244) ENSSLUG00000008287 ENSSLUG00000008296 ENSSLUG00000008321 #21 ENSSLUG00000008337 #22 TSPEAR (ENSSLUG00000008375) #24 ENSSLUG00000008403 fabp7a (ENSSLUG00000008420) ENSSLUG00000008440 ENSSLUG00000008526 fyna (ENSSLUG00000008646) cirbpa (ENSSLUG00000010554) ENSSLUG00000010562 marcksb (ENSSLUG00000010569) col10a1a (ENSSLUG00000010573) ENSSLUG00000010577 fhl5 (ENSSLUG00000010587) fut9a (ENSSLUG00000010591) manea (ENSSLUG00000010594) ppp1cb (ENSSLUG00000010635) Eupecaria_C ANCESTRAL SPECIES 8 ENSGT00940000155914.c.b.d ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000011514 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k.m.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT01090000260229 ENSGT00990000204856 ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00530000063883 Eupercaria_incertae_sedis ANCESTRAL SPECIES 16 ENSGT00940000155914.c.b.d ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000011514 ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k.m.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT01090000260229 ENSGT00990000204856 ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a ENSGT00390000016054.a ENSGT00940000154644.jb.b.f.b ENSGT00530000063883 Large yellow croaker MODERN SPECIES 495 ENSLCRG00005008482 ENSLCRG00005008484 d2hgdh (ENSLCRG00005008486) acvr1l (ENSLCRG00005008695) otomp (ENSLCRG00005008923) hs6st1b (ENSLCRG00005008924) uggt1 (ENSLCRG00005008936) ENSLCRG00005009067 ola1 (ENSLCRG00005009072) TRA2B (ENSLCRG00005009291) ENSLCRG00005009295 zgc:112416 (ENSLCRG00005009300) atg9a (ENSLCRG00005009303) ENSLCRG00005009335 ENSLCRG00005011487 #21 ENSLCRG00005011490 #22 TSPEAR (ENSLCRG00005011497) #24 ENSLCRG00005011511 fabp7a (ENSLCRG00005011544) ENSLCRG00005011563 ENSLCRG00005011585 ENSLCRG00005011588 ENSLCRG00005011589 fyna (ENSLCRG00005011621) marcksb (ENSLCRG00005014533) col10a1a (ENSLCRG00005014534) ENSLCRG00005014536 fhl5 (ENSLCRG00005014538) fut9a (ENSLCRG00005014540) manea (ENSLCRG00005014541) ppp1cb (ENSLCRG00005014543) Tetraodontidae ANCESTRAL SPECIES 3 ENSGT00950000183049.C.a.b ENSGT00940000155914.c.b ENSGT00550000075086 ENSGT00940000166078 ENSGT00940000166763 ENSGT00950000183071.a.a.b.c ENSGT00390000004600.b.a ENSGT00940000155099.k.b ENSGT00390000000673.a.b ENSGT00950000183009.db.a ENSGT00940000155489.a ENSGT00730000110871.a.a.a.b ENSGT00390000014839.b ENSGT00940000164909.e.b ENSGT00390000004977.d.b #21 ENSGT00950000182895.a.b.v.k.m.b #22 ENSGT00510000047718.c #24 ENSGT00940000157267 ENSGT00940000156713.n ENSGT01090000260229 ENSGT00940000164609.b ENSGT00940000155462.`b.a ENSGT00730000111419.b ENSGT00940000154317.a.b.a ENSGT00530000063596.A.j ENSGT00950000183028.a.a.b ENSGT00940000155095.i.a.i ENSGT00940000155095.i.a.j ENSGT00390000016054.a ENSGT00940000154644.jb.b.e ENSGT00530000063883 Tetraodon MODERN SPECIES 1 keap1a (ENSTNIG00000017201) SSBP4 (ENSTNIG00000017202) ENSTNIG00000017203 d2hgdh (ENSTNIG00000017204) acvr1l (ENSTNIG00000002260) otomp (ENSTNIG00000017205) hs6st1b (ENSTNIG00000017206) uggt1 (ENSTNIG00000017207) ENSTNIG00000017208 ola1 (ENSTNIG00000017209) TRA2B (ENSTNIG00000017210) ENSTNIG00000017211 atg9a (ENSTNIG00000001749) ENSTNIG00000017212 ENSTNIG00000017213 #21 ENSTNIG00000017214 #22 TSPEAR (ENSTNIG00000017215) #24 ENSTNIG00000017216 fabp7a (ENSTNIG00000017217) ENSTNIG00000017218 fyna (ENSTNIG00000017219) marcksb (ENSTNIG00000017220) fyna (ENSTNIG00000017221) marcksb (ENSTNIG00000000080) col10a1a (ENSTNIG00000017222) fhl5 (ENSTNIG00000017223) fut9a (ENSTNIG00000017224) fut9a (ENSTNIG00000017225) manea (ENSTNIG00000017227) ppp1cb (ENSTNIG00000017228) ENSTNIG00000017229 Eupercaria ANCESTRAL SPECIES 25 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000177394 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v.k.n #22 ENSGT00940000168354 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241 ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a Eupecaria_A ANCESTRAL SPECIES 24 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000177394 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v.k.n #22 ENSGT00940000168354 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241 ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a Eupecaria_B ANCESTRAL SPECIES 24 ENSGT00940000155682.g.a ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v.k.n #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241 ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A Eupecaria_C ANCESTRAL SPECIES 24 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000161051.a.a.a.a.b ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v.k.n #22 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A Eupercaria_incertae_sedis ANCESTRAL SPECIES 24 ENSGT00940000155682.g.a ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000161051.a.a.a.a.b ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v.k.n #22 ENSGT00950000182895.a.b.u.b #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A European seabass DUPLICATION European seabass MODERN SPECIES 5 ENSDLAG00005014466 ENSDLAG00005018228 ENSDLAG00005019485 MARCHF4 (ENSDLAG00005019516) SMARCAL1 (ENSDLAG00005019533) nme9 (ENSDLAG00005019963) ehhadh (ENSDLAG00005020031) tmem41aa (ENSDLAG00005027741) igf2bp2a (ENSDLAG00005020121) tra2b (ENSDLAG00005021470) ENSDLAG00005000115 ENSDLAG00005000133 ENSDLAG00005000283 ENSDLAG00005000671 ENSDLAG00005030476 #21 ENSDLAG00005030680 #22 ENSDLAG00005000917 PRPF40A (ENSDLAG00005001258) RPRM (ENSDLAG00005031449) GALNT13 (ENSDLAG00005003545) nr4a2a (ENSDLAG00005003924) ENSDLAG00005003961 GALNT5 (ENSDLAG00005004000) CYTIP (ENSDLAG00005004012) ACVR1C (ENSDLAG00005004029) ENSDLAG00005004101 ENSDLAG00005004188 UPP2 (ENSDLAG00005004214) CCDC148 (ENSDLAG00005033481) PKP4 (ENSDLAG00005004377) dap1b (ENSDLAG00005005030) European seabass MODERN SPECIES 2 keap1a (ENSDLAG00005009923) ENSDLAG00005033152 ENSDLAG00005009894 ENSDLAG00005009882 d2hgdh (ENSDLAG00005009591) acvr1l (ENSDLAG00005009489) otomp (ENSDLAG00005009478) ENSDLAG00005009425 uggt1 (ENSDLAG00005008037) ENSDLAG00005007955 ENSDLAG00005007837 ENSDLAG00005032411 ENSDLAG00005007783 atg9a (ENSDLAG00005007653) ENSDLAG00005007433 ENSDLAG00005029107 #22 ENSDLAG00005007352 #24 ENSDLAG00005007273 fabp7a (ENSDLAG00005027308) ENSDLAG00005032112 ENSDLAG00005030192 ENSDLAG00005007243 fyna (ENSDLAG00005004742) marcksb (ENSDLAG00005004646) col10a1a (ENSDLAG00005004562) ENSDLAG00005030031 ENSDLAG00005004516 fut9a (ENSDLAG00005033745) ENSDLAG00005004495 ppp1cb (ENSDLAG00005004325) ENSDLAG00005004177 Gilthead seabream DUPLICATION Gilthead seabream MODERN SPECIES 7 ENSSAUG00010027551 ENSSAUG00010027563 ENSSAUG00010027566 ENSSAUG00010027567 ENSSAUG00010001620 ENSSAUG00010001628 ENSSAUG00010001643 ENSSAUG00010001650 ENSSAUG00010001659 ENSSAUG00010001666 ENSSAUG00010001673 ENSSAUG00010001678 atg9a (ENSSAUG00010001736) ENSSAUG00010001859 ENSSAUG00010002213 #21 ENSSAUG00010002232 #22 TSPEAR (ENSSAUG00010002249) #24 ENSSAUG00010002258 fabp7a (ENSSAUG00010002273) ENSSAUG00010002286 ENSSAUG00010002307 ENSSAUG00010002308 fyna (ENSSAUG00010002435) marcksb (ENSSAUG00010007973) col10a1a (ENSSAUG00010007974) ENSSAUG00010007975 fhl5 (ENSSAUG00010007981) fut9a (ENSSAUG00010007988) manea (ENSSAUG00010007989) ppp1cb (ENSSAUG00010007999) ENSSAUG00010008373 Gilthead seabream MODERN SPECIES 23 ENSSAUG00010027394 MARCHF4 (ENSSAUG00010027393) SMARCAL1 (ENSSAUG00010027379) nme9 (ENSSAUG00010027377) zgc:162707 (ENSSAUG00010027376) ehhadh (ENSSAUG00010027375) tmem41aa (ENSSAUG00010027374) igf2bp2a (ENSSAUG00010027330) tra2b (ENSSAUG00010027319) ENSSAUG00010027315 ENSSAUG00010027313 ANKZF1 (ENSSAUG00010027309) glb1l (ENSSAUG00010027170) ENSSAUG00010026994 ENSSAUG00010026927 #21 sumo3a (ENSSAUG00010026924) #22 prpf40a (ENSSAUG00010026723) FMNL2 (ENSSAUG00010026687) rprmb (ENSSAUG00010026685) GALNT13 (ENSSAUG00010026683) KCNJ3 (ENSSAUG00010026682) nr4a2a (ENSSAUG00010026680) ENSSAUG00010026679 ENSSAUG00010026678 GALNT5 (ENSSAUG00010026677) CYTIP (ENSSAUG00010026676) ACVR1C (ENSSAUG00010026675) ENSSAUG00010026674 ENSSAUG00010026673 upp2 (ENSSAUG00010026672) CCDC148 (ENSSAUG00010026671) Perciformes ANCESTRAL SPECIES 23 ENSGT00940000155682.g.a ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v.k.n #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241 ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A Perciformes_a ANCESTRAL SPECIES 23 ENSGT00940000155682.g.a ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.b.v.k.n #22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00390000001718.a ENSGT00940000159241 ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A Pike perch MODERN SPECIES 1 MARCHF4 (ENSSLUG00000023443) SMARCAL1 (ENSSLUG00000023356) nme9 (ENSSLUG00000023329) ENSSLUG00000023325 zgc:162707 (ENSSLUG00000023322) ehhadh (ENSSLUG00000023319) tmem41aa (ENSSLUG00000023315) igf2bp2a (ENSSLUG00000023280) tra2b (ENSSLUG00000023261) ENSSLUG00000023250 ENSSLUG00000023243 ANKZF1 (ENSSLUG00000023223) glb1l (ENSSLUG00000022637) ENSSLUG00000021961 ENSSLUG00000021901 #21 ENSSLUG00000021895 #22 ENSSLUG00000021892 FMNL2 (ENSSLUG00000021788) prpf40a (ENSSLUG00000021650) rprmb (ENSSLUG00000021626) GALNT13 (ENSSLUG00000021561) KCNJ3 (ENSSLUG00000021544) nr4a2a (ENSSLUG00000021521) GALNT5 (ENSSLUG00000021514) ENSSLUG00000021511 CYTIP (ENSSLUG00000021507) ACVR1C (ENSSLUG00000021498) ENSSLUG00000021475 ENSSLUG00000021465 upp2 (ENSSLUG00000021462) CCDC148 (ENSSLUG00000021457) Channel bull blenny MODERN SPECIES 13 COL6A2 (ENSCGOG00000024729) MARCHF4 (ENSCGOG00000024728) SMARCAL1 (ENSCGOG00000024727) nme9 (ENSCGOG00000024726) zgc:162707 (ENSCGOG00000024725) ehhadh (ENSCGOG00000024724) tmem41aa (ENSCGOG00000024723) igf2bp2a (ENSCGOG00000024722) tra2b (ENSCGOG00000024721) ENSCGOG00000024720 ENSCGOG00000024719 ANKZF1 (ENSCGOG00000024717) glb1l (ENSCGOG00000024716) ENSCGOG00000024715 ENSCGOG00000024714 #21 sumo3a (ENSCGOG00000024713) #22 FMNL2 (ENSCGOG00000024699) prpf40a (ENSCGOG00000024649) rprmb (ENSCGOG00000024635) GALNT13 (ENSCGOG00000024600) KCNJ3 (ENSCGOG00000024583) nr4a2a (ENSCGOG00000024582) ENSCGOG00000024581 GALNT5 (ENSCGOG00000024568) ENSCGOG00000024567 CYTIP (ENSCGOG00000024565) ACVR1C (ENSCGOG00000024563) ENSCGOG00000024561 ENSCGOG00000024560 upp2 (ENSCGOG00000024556) CCDC148 (ENSCGOG00000024555) Elephant shark DUPLICATION Elephant shark MODERN SPECIES 1495 galk1 (ENSCMIG00000020054) xylt2 (ENSCMIG00000020059) ENSCMIG00000000186 mrpl27 (ENSCMIG00000000192) ENSCMIG00000000223 LRRC59 (ENSCMIG00000000241) acsf2 (ENSCMIG00000000326) CHAD (ENSCMIG00000000530) rsad1 (ENSCMIG00000000534) ENSCMIG00000000545 EPN3 (ENSCMIG00000000559) gga3a (ENSCMIG00000000593) nherf1a (ENSCMIG00000000675) NUP85 (ENSCMIG00000000752) ENSCMIG00000000885 sumo2 (ENSCMIG00000000894) #22 NT5C (ENSCMIG00000000904) mrps7 (ENSCMIG00000000910) ENSCMIG00000000918 ENSCMIG00000000925 ENSCMIG00000000932 llgl2 (ENSCMIG00000000979) GALR2 (ENSCMIG00000001021) srp68 (ENSCMIG00000001120) evpla (ENSCMIG00000001300) acox1 (ENSCMIG00000001444) pik3cg (ENSCMIG00000001819) ENSCMIG00000001874 FBF1 (ENSCMIG00000001887) mrpl38 (ENSCMIG00000001923) ENSCMIG00000001963 Elephant shark MODERN SPECIES 1616 SYT6 (ENSCMIG00000008747) ENSCMIG00000008754 DHRS4 (ENSCMIG00000008759) KCNJ14 (ENSCMIG00000008766) ENSCMIG00000008768 ENSCMIG00000008773 ENSCMIG00000008779 #22 mapk8ip3 (ENSCMIG00000008895) NME3 (ENSCMIG00000009215) rhbdl1 (ENSCMIG00000009217) stub1 (ENSCMIG00000009221) fbxl16 (ENSCMIG00000009223) ENSCMIG00000009224 CRAMP1 (ENSCMIG00000009227) wdr24 (ENSCMIG00000009228) galr2b (ENSCMIG00000009231) smim22 (ENSCMIG00000009233) rogdi (ENSCMIG00000009239) glyr1 (ENSCMIG00000009245) UBN1 (ENSCMIG00000009254) ppl (ENSCMIG00000009260) ENSCMIG00000009261 Gnathostomata ANCESTRAL SPECIES ENSGT00950000182895.a.a ##22 Euteleostomi DUPLICATION Euteleostomi DUPLICATION Euteleostomi DUPLICATION Euteleostomi ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a ##22 Sarcopterygii ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a ##22 Tetrapoda ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a ##22 Anura ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a ##22 Leishan spiny toad MODERN SPECIES DAB2 (ENSLLEG00000002254) ENSLLEG00000001996 ENSLLEG00000001740 FYB1 (ENSLLEG00000001548) ENSLLEG00000001509 RICTOR (ENSLLEG00000001324) ENSLLEG00000001272 ENSLLEG00000001253 ENSLLEG00000001190 ENSLLEG00000001161 LIFR (ENSLLEG00000001109) EGFLAM (ENSLLEG00000000879) GDNF (ENSLLEG00000000815) WDR70 (ENSLLEG00000000716) ENSLLEG00000000633 ENSLLEG00000000614 ##22 ENSLLEG00000000510 NIPBL (ENSLLEG00000000375) SLC1A3 (ENSLLEG00000000322) ENSLLEG00000000304 RANBP3L (ENSLLEG00000000237) NADK2 (ENSLLEG00000000199) SKP2 (ENSLLEG00000000176) LMBRD2 (ENSLLEG00000000074) ENSLLEG00000000030 ENSLLEG00000000027 ENSLLEG00000000006 Amniota DUPLICATION Amniota DUPLICATION Amniota ANCESTRAL SPECIES 14 ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Mammalia ANCESTRAL SPECIES 21 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Theria ANCESTRAL SPECIES 9 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Eutheria ANCESTRAL SPECIES 4 ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Boreoeutheria ANCESTRAL SPECIES 4 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Laurasiatheria ANCESTRAL SPECIES 4 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Laurasiatheria_a ANCESTRAL SPECIES 4 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 Artiodactyla ANCESTRAL SPECIES 4 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT01070000255137 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 Suina ANCESTRAL SPECIES ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT01070000255137 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.g ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Pig MODERN SPECIES 3 SAP30BP (ENSSSCG00000017205) RECQL5 (ENSSSCG00000023978) SMIM5 (ENSSSCG00000038844) MYO15B (ENSSSCG00000036248) LLGL2 (ENSSSCG00000033518) TSEN54 (ENSSSCG00000036852) CASKIN2 (ENSSSCG00000040578) TMEM94 (ENSSSCG00000034608) GRB2 (ENSSSCG00000017206) SLC25A19 (ENSSSCG00000017208) MIF4GD (ENSSSCG00000017209) MRPS7 (ENSSSCG00000035134) GGA3 (ENSSSCG00000017211) NUP85 (ENSSSCG00000017207) ENSSSCG00000055773 SUMO2 (ENSSSCG00000017212) ##22 JPT1 (ENSSSCG00000017213) NT5C (ENSSSCG00000028210) ENSSSCG00000017214 SLC16A5 (ENSSSCG00000017215) ENSSSCG00000017216 KCTD2 (ENSSSCG00000031958) ENSSSCG00000032166 MRPL58 (ENSSSCG00000034406) CDR2L (ENSSSCG00000017218) HID1 (ENSSSCG00000017219) OTOP3 (ENSSSCG00000017220) OTOP2 (ENSSSCG00000017222) USH1G (ENSSSCG00000017223) FADS6 (ENSSSCG00000017226) FDXR (ENSSSCG00000017227) Artiodactyla_a ANCESTRAL SPECIES 3 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b.i.a #22 ENSGT01070000255137 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 Camelidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a ##22 Arabian camel MODERN SPECIES 42 ENSCDRG00005012742 FZD8 (ENSCDRG00005012647) CCNY (ENSCDRG00005012559) MBD3L1 (ENSCDRG00005012272) ENSCDRG00005012234 ENSCDRG00005012043 ENSCDRG00005012020 ##22 EPC1 (ENSCDRG00005011777) Artiodactyla_b ANCESTRAL SPECIES 3 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b.i.a #22 ENSGT01070000255137 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 Pecora ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a ##22 Percora_a ANCESTRAL SPECIES 144 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 Bovidae ANCESTRAL SPECIES 136 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 Bovinae ANCESTRAL SPECIES ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b.i.a #22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00390000003582.p ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Bos ANCESTRAL SPECIES 175 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 Bos_a ANCESTRAL SPECIES 249 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 Domestic yak MODERN SPECIES 10 SMIM5 (ENSBGRG00000020864) RECQL5 (ENSBGRG00000020596) ENSBGRG00000019812 LLGL2 (ENSBGRG00000019559) TSEN54 (ENSBGRG00000019475) CASKIN2 (ENSBGRG00000019179) TMEM94 (ENSBGRG00000018413) ENSBGRG00000018365 ENSBGRG00000018158 SLC25A19 (ENSBGRG00000018059) ENSBGRG00000017780 MRPS7 (ENSBGRG00000017681) GGA3 (ENSBGRG00000017506) NUP85 (ENSBGRG00000017128) ENSBGRG00000017086 SUMO2 (ENSBGRG00000016934) ##22 ENSBGRG00000016769 NT5C (ENSBGRG00000016708) ARMC7 (ENSBGRG00000016610) SLC16A5 (ENSBGRG00000016504) ENSBGRG00000016260 ENSBGRG00000016167 ATP5PD (ENSBGRG00000016084) MRPL58 (ENSBGRG00000015894) CDR2L (ENSBGRG00000015762) HID1 (ENSBGRG00000015655) OTOP3 (ENSBGRG00000015480) USH1G (ENSBGRG00000015435) OTOP2 (ENSBGRG00000015390) FADS6 (ENSBGRG00000015295) FDXR (ENSBGRG00000014566) Cetacea ANCESTRAL SPECIES 5 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620.k ENSGT00940000157333 ENSGT00390000000204 ENSGT00940000164037 ENSGT00510000055459 ENSGT01070000255137 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 ENSGT00940000156964.C Blue whale MODERN SPECIES 12 SAP30BP (ENSBMSG00010016133) SMIM5 (ENSBMSG00010016103) RECQL5 (ENSBMSG00010016008) ENSBMSG00010015905 ENSBMSG00010015556 LLGL2 (ENSBMSG00010015305) TSEN54 (ENSBMSG00010015258) CASKIN2 (ENSBMSG00010015224) TMEM94 (ENSBMSG00010014655) GRB2 (ENSBMSG00010014451) SLC25A19 (ENSBMSG00010014383) MIF4GD (ENSBMSG00010020366) ENSBMSG00010020331 GGA3 (ENSBMSG00010020192) NUP85 (ENSBMSG00010020119) SUMO2 (ENSBMSG00010020089) ##22 JPT1 (ENSBMSG00010020067) NT5C (ENSBMSG00010020048) ARMC7 (ENSBMSG00010020032) SLC16A5 (ENSBMSG00010020006) KCTD2 (ENSBMSG00010019968) ENSBMSG00010019941 MRPL58 (ENSBMSG00010019919) CDR2L (ENSBMSG00010019899) HID1 (ENSBMSG00010019874) OTOP3 (ENSBMSG00010019826) ENSBMSG00010019807 USH1G (ENSBMSG00010019795) FADS6 (ENSBMSG00010019783) FDXR (ENSBMSG00010018277) GRIN2C (ENSBMSG00010018086) Odontoceti ANCESTRAL SPECIES 16 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620.k ENSGT00940000157333 ENSGT00390000000204 ENSGT00940000164037 ENSGT00510000055459 ENSGT01070000255137 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 ENSGT00940000156964.C Sperm whale MODERN SPECIES 5 SSTR2 (ENSPCTG00005007994) ENSPCTG00005007977 COG1 (ENSPCTG00005007919) FAM104A (ENSPCTG00005007866) C14H17orf80 (ENSPCTG00005007841) CPSF4L (ENSPCTG00005007825) CDC42EP4 (ENSPCTG00005007800) ENSPCTG00005007773 SDK2 (ENSPCTG00005007730) DNAI2 (ENSPCTG00005007655) TTYH2 (ENSPCTG00005007625) GPRC5C (ENSPCTG00005007518) ENSPCTG00005007497 ENSPCTG00005007479 ENSPCTG00005007424 SUMO2 (ENSPCTG00005007396) ##22 JPT1 (ENSPCTG00005007370) NT5C (ENSPCTG00005007343) ARMC7 (ENSPCTG00005007302) SLC16A5 (ENSPCTG00005007284) KCTD2 (ENSPCTG00005007167) ATP5PD (ENSPCTG00005007140) MRPL58 (ENSPCTG00005007093) ENSPCTG00005007068 TMEM94 (ENSPCTG00005006891) CASKIN2 (ENSPCTG00005006820) TSEN54 (ENSPCTG00005006735) LLGL2 (ENSPCTG00005006599) ENSPCTG00005006350 ENSPCTG00005006294 ITGB4 (ENSPCTG00005005947) Odontoceti_a ANCESTRAL SPECIES 14 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620.k ENSGT00940000157333 ENSGT00390000000204 ENSGT00940000164037 ENSGT00510000055459 ENSGT01070000255137 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 ENSGT00940000156964.C Odontoceti_b ANCESTRAL SPECIES 16 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620.k ENSGT00940000157333 ENSGT00390000000204 ENSGT01070000255137 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 ENSGT00940000156964.C Monodontidae ANCESTRAL SPECIES 16 ENSGT00940000153676.a.i ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620.k ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 ENSGT00940000156964.C Beluga whale MODERN SPECIES 51 ENSDLEG00000005847 PLA2G2C (ENSDLEG00000005841) UBXN10 (ENSDLEG00000005836) VWA5B1 (ENSDLEG00000005825) ENSDLEG00000005817 CAMK2N1 (ENSDLEG00000005810) MUL1 (ENSDLEG00000005800) FAM43B (ENSDLEG00000005795) ENSDLEG00000005792 CDA (ENSDLEG00000005787) PINK1 (ENSDLEG00000015592) DDOST (ENSDLEG00000015576) KIF17 (ENSDLEG00000015482) SH2D5 (ENSDLEG00000015455) HP1BP3 (ENSDLEG00000015438) ENSDLEG00000015424 ##22 EIF4G3 (ENSDLEG00000015184) ECE1 (ENSDLEG00000015064) ALPL (ENSDLEG00000015032) RAP1GAP (ENSDLEG00000014902) USP48 (ENSDLEG00000013908) ENSDLEG00000011698 ENSDLEG00000011504 ENSDLEG00000011489 CDC42 (ENSDLEG00000011472) WNT4 (ENSDLEG00000011446) ZBTB40 (ENSDLEG00000011404) EPHA8 (ENSDLEG00000011365) C1QA (ENSDLEG00000011355) C1QC (ENSDLEG00000011346) ENSDLEG00000011334 Narwhal DUPLICATION Narwhal MODERN SPECIES 304 PLA2G2D (ENSMMNG00015007745) ENSMMNG00015007730 UBXN10 (ENSMMNG00015007718) VWA5B1 (ENSMMNG00015007677) ENSMMNG00015007656 CAMK2N1 (ENSMMNG00015007646) MUL1 (ENSMMNG00015007626) FAM43B (ENSMMNG00015007615) ENSMMNG00015007603 ENSMMNG00015007586 PINK1 (ENSMMNG00015007553) DDOST (ENSMMNG00015007494) KIF17 (ENSMMNG00015007410) SH2D5 (ENSMMNG00015007281) HP1BP3 (ENSMMNG00015007229) ENSMMNG00015007187 ##22 EIF4G3 (ENSMMNG00015006855) ECE1 (ENSMMNG00015006670) ALPL (ENSMMNG00015006622) RAP1GAP (ENSMMNG00015006515) USP48 (ENSMMNG00015006380) LDLRAD2 (ENSMMNG00015006336) HSPG2 (ENSMMNG00015006166) ENSMMNG00015006079 ENSMMNG00015006068 CDC42 (ENSMMNG00015006043) WNT4 (ENSMMNG00015005944) ZBTB40 (ENSMMNG00015005888) EPHA8 (ENSMMNG00015005850) C1QA (ENSMMNG00015005824) C1QC (ENSMMNG00015005812) Narwhal MODERN SPECIES 316 GALK1 (ENSMMNG00015020470) ITGB4 (ENSMMNG00015020539) SAP30BP (ENSMMNG00015020693) ENSMMNG00015020714 RECQL5 (ENSMMNG00015020738) SMIM5 (ENSMMNG00015020801) LLGL2 (ENSMMNG00015020903) TSEN54 (ENSMMNG00015020938) CASKIN2 (ENSMMNG00015020986) TMEM94 (ENSMMNG00015021085) GRB2 (ENSMMNG00015021220) SLC25A19 (ENSMMNG00015021299) ENSMMNG00015021329 GGA3 (ENSMMNG00015021349) NUP85 (ENSMMNG00015021391) ENSMMNG00015021438 ##22 JPT1 (ENSMMNG00015021453) NT5C (ENSMMNG00015021462) ARMC7 (ENSMMNG00015021483) SLC16A5 (ENSMMNG00015021496) KCTD2 (ENSMMNG00015021510) ATP5PD (ENSMMNG00015021523) MRPL58 (ENSMMNG00015021535) CDR2L (ENSMMNG00015021542) HID1 (ENSMMNG00015021553) OTOP3 (ENSMMNG00015021562) OTOP2 (ENSMMNG00015021576) USH1G (ENSMMNG00015021586) FADS6 (ENSMMNG00015021599) FDXR (ENSMMNG00015021638) GRIN2C (ENSMMNG00015021672) Vaquita DUPLICATION Vaquita MODERN SPECIES PLA2G2D (ENSPSNG00000001700) PLA2G2F (ENSPSNG00000001720) UBXN10 (ENSPSNG00000001734) VWA5B1 (ENSPSNG00000001760) CAMK2N1 (ENSPSNG00000001799) MUL1 (ENSPSNG00000001815) ENSPSNG00000001835 FAM43B (ENSPSNG00000001846) CDA (ENSPSNG00000001858) PINK1 (ENSPSNG00000001874) DDOST (ENSPSNG00000001905) KIF17 (ENSPSNG00000001935) SH2D5 (ENSPSNG00000001967) HP1BP3 (ENSPSNG00000001989) EIF4G3 (ENSPSNG00000002080) ENSPSNG00000002247 ##22 ECE1 (ENSPSNG00000002321) ALPL (ENSPSNG00000002481) RAP1GAP (ENSPSNG00000002603) USP48 (ENSPSNG00000002817) HSPG2 (ENSPSNG00000002933) ENSPSNG00000003096 ENSPSNG00000003113 CDC42 (ENSPSNG00000003130) WNT4 (ENSPSNG00000003148) ZBTB40 (ENSPSNG00000003174) EPHA8 (ENSPSNG00000000007) C1QA (ENSPSNG00000000010) C1QC (ENSPSNG00000000012) ENSPSNG00000000015 C1QB (ENSPSNG00000000017) Vaquita MODERN SPECIES 12 SAP30BP (ENSPSNG00000017385) ENSPSNG00000017480 RECQL5 (ENSPSNG00000017584) SMIM5 (ENSPSNG00000017821) ENSPSNG00000017920 LLGL2 (ENSPSNG00000018735) TSEN54 (ENSPSNG00000019026) CASKIN2 (ENSPSNG00000019079) TMEM94 (ENSPSNG00000019220) GRB2 (ENSPSNG00000019721) ENSPSNG00000019796 ENSPSNG00000019911 GGA3 (ENSPSNG00000019955) NUP85 (ENSPSNG00000020041) ENSPSNG00000020122 ENSPSNG00000020161 ##22 JPT1 (ENSPSNG00000020201) NT5C (ENSPSNG00000020241) ARMC7 (ENSPSNG00000020280) SLC16A5 (ENSPSNG00000020319) KCTD2 (ENSPSNG00000020360) ENSPSNG00000020406 MRPL58 (ENSPSNG00000020448) CDR2L (ENSPSNG00000020478) HID1 (ENSPSNG00000020507) OTOP3 (ENSPSNG00000020558) ENSPSNG00000020650 USH1G (ENSPSNG00000020673) FADS6 (ENSPSNG00000020701) FDXR (ENSPSNG00000020806) GRIN2C (ENSPSNG00000021017) Laurasiatheria_b ANCESTRAL SPECIES 4 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Carnivora ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a ##22 Caniformia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a ##22 Canidae ANCESTRAL SPECIES 21 ENSGT00940000160523 ENSGT00940000157540.A.l ENSGT00940000156291 ENSGT00950000183112.a ENSGT00940000155888 ENSGT00960000191040 ENSGT00730000111392 ENSGT01030000234535.F.a ENSGT01080000257410.A.f ENSGT00950000182940.b.a.a ENSGT00940000154146.a ENSGT00950000182983.B.b ENSGT00940000160936 ENSGT00390000013415.a.b.q.b ENSGT00940000155645 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00390000015400 ENSGT00390000016068 ENSGT00390000005224 ENSGT00940000161660 ENSGT00940000160781 ENSGT00940000155971 ENSGT00940000159628 ENSGT00940000156049 ENSGT00950000182902.b.a ENSGT00940000160026 ENSGT00390000005855 ENSGT00390000000453 ENSGT00950000182844.b.b.b ENSGT00390000005222 ENSGT00940000159749 Red fox DUPLICATION Red fox MODERN SPECIES 1 MCTP2 (ENSVVUG00000013991) ENSVVUG00000013986 RGMA (ENSVVUG00000013983) ENSVVUG00000013557 ENSVVUG00000013191 ENSVVUG00000013171 ST8SIA2 (ENSVVUG00000013140) SLCO3A1 (ENSVVUG00000013095) SV2B (ENSVVUG00000013022) AKAP13 (ENSVVUG00000012249) KLHL25 (ENSVVUG00000012193) AGBL1 (ENSVVUG00000012159) ENSVVUG00000012112 NTRK3 (ENSVVUG00000012090) ENSVVUG00000012059 ##22 ENSVVUG00000012061 ##22 MRPL46 (ENSVVUG00000012054) MRPS11 (ENSVVUG00000012046) DET1 (ENSVVUG00000012036) AEN (ENSVVUG00000012020) ISG20 (ENSVVUG00000012013) ACAN (ENSVVUG00000011685) HAPLN3 (ENSVVUG00000011619) MFGE8 (ENSVVUG00000011607) ABHD2 (ENSVVUG00000011601) ENSVVUG00000011559 RLBP1 (ENSVVUG00000011554) FANCI (ENSVVUG00000011438) POLG (ENSVVUG00000011407) RHCG (ENSVVUG00000011374) TICRR (ENSVVUG00000011314) Red fox MODERN SPECIES 1 ENSVVUG00000014025 MCTP2 (ENSVVUG00000013991) ENSVVUG00000013986 RGMA (ENSVVUG00000013983) ENSVVUG00000013557 ENSVVUG00000013191 ENSVVUG00000013171 ST8SIA2 (ENSVVUG00000013140) SLCO3A1 (ENSVVUG00000013095) SV2B (ENSVVUG00000013022) AKAP13 (ENSVVUG00000012249) KLHL25 (ENSVVUG00000012193) AGBL1 (ENSVVUG00000012159) ENSVVUG00000012112 NTRK3 (ENSVVUG00000012090) ENSVVUG00000012059 ##22 ENSVVUG00000012061 ##22 MRPL46 (ENSVVUG00000012054) MRPS11 (ENSVVUG00000012046) DET1 (ENSVVUG00000012036) AEN (ENSVVUG00000012020) ISG20 (ENSVVUG00000012013) ACAN (ENSVVUG00000011685) HAPLN3 (ENSVVUG00000011619) MFGE8 (ENSVVUG00000011607) ABHD2 (ENSVVUG00000011601) ENSVVUG00000011559 RLBP1 (ENSVVUG00000011554) FANCI (ENSVVUG00000011438) POLG (ENSVVUG00000011407) RHCG (ENSVVUG00000011374) Canis_lupus ANCESTRAL SPECIES 23 ENSGT00940000153533.a.m.b.a ENSGT00940000156291 ENSGT00950000183112.a ENSGT00940000155888 ENSGT00960000191040 ENSGT00730000111392 ENSGT01030000234535.F.a ENSGT01080000257410.A.f ENSGT00950000182940.b.a.a ENSGT00390000006178.v ENSGT00940000154146.a ENSGT00950000182983.B.b ENSGT00940000160936 ENSGT00390000013415.a.b.q.b ENSGT00940000155645 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00390000015400 ENSGT00390000016068 ENSGT00390000005224 ENSGT00940000161660 ENSGT00940000160781 ENSGT00940000155971 ENSGT00940000159628 ENSGT00940000156049 ENSGT00950000182902.b.a ENSGT00940000160026 ENSGT00390000005855 ENSGT00390000000453 ENSGT00950000182844.b.b.b ENSGT00390000005222 ENSGT00940000159749 Dingo MODERN SPECIES 138 ENSCAFG00020019245 ENSCAFG00020019232 ENSCAFG00020019228 ENSCAFG00020019227 ENSCAFG00020019226 FAM174B (ENSCAFG00020019222) ST8SIA2 (ENSCAFG00020019198) SLCO3A1 (ENSCAFG00020019152) SV2B (ENSCAFG00020019115) ENSCAFG00020019097 AKAP13 (ENSCAFG00020019058) KLHL25 (ENSCAFG00020019009) AGBL1 (ENSCAFG00020018957) ENSCAFG00020018919 NTRK3 (ENSCAFG00020018900) ENSCAFG00020018875 ##22 MRPL46 (ENSCAFG00020018871) MRPS11 (ENSCAFG00020018868) DET1 (ENSCAFG00020018845) AEN (ENSCAFG00020018839) ISG20 (ENSCAFG00020018837) ACAN (ENSCAFG00020018766) HAPLN3 (ENSCAFG00020018752) MFGE8 (ENSCAFG00020018748) ABHD2 (ENSCAFG00020018746) RLBP1 (ENSCAFG00020018734) FANCI (ENSCAFG00020018514) POLG (ENSCAFG00020018479) RHCG (ENSCAFG00020018471) TICRR (ENSCAFG00020018451) KIF7 (ENSCAFG00020018353) Caniformia_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a ##22 Ursidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a ##22 Ursus ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a ##22 American black bear MODERN SPECIES 5328 ENSUAMG00000010036 ##22 Felidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a ##22 Panthera ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a ##22 Panthera_a ANCESTRAL SPECIES 34 ENSGT00950000183164.F ENSGT00950000182965.a.b.b.a ENSGT00390000001638 ENSGT00940000158789 ENSGT00390000006915.c.d ENSGT00940000160481 ENSGT00940000161604.a ENSGT00940000161713 ENSGT00440000033895 ENSGT00940000163297.d ENSGT00940000161342.g ENSGT00390000015789.c.b ENSGT01090000260076.b.a ENSGT00940000161533.C ENSGT00940000155589.p.a ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00390000005094 ENSGT00940000158347 ENSGT00940000159451 ENSGT00940000161952 ENSGT00940000160785 ENSGT00940000161221 ENSGT00530000063786.b ENSGT00940000162863 ENSGT00390000015219 ENSGT00950000183035.a.a ENSGT00950000182803.B.d.a.i.a ENSGT00940000156656 ENSGT00390000003197.i.b ENSGT00940000159460 ENSGT00940000161342.h lion MODERN SPECIES 88 TCEAL1 (ENSPLOG00000020453) MORF4L2 (ENSPLOG00000020448) TMEM31 (ENSPLOG00000020425) ENSPLOG00000020388 PLP1 (ENSPLOG00000020319) RAB9B (ENSPLOG00000020301) ENSPLOG00000020272 SLC25A53 (ENSPLOG00000020258) FAM199X (ENSPLOG00000020220) ENSPLOG00000020190 ENSPLOG00000020150 ENSPLOG00000020139 IL1RAPL2 (ENSPLOG00000020074) NRK (ENSPLOG00000019836) ENSPLOG00000019763 ENSPLOG00000019731 ##22 RADX (ENSPLOG00000019564) RNF128 (ENSPLOG00000019444) TBC1D8B (ENSPLOG00000019087) RIPPLY1 (ENSPLOG00000019020) CLDN2 (ENSPLOG00000018993) MORC4 (ENSPLOG00000018776) RBM41 (ENSPLOG00000018650) NUP62CL (ENSPLOG00000018562) DNAAF6 (ENSPLOG00000018507) FRMPD3 (ENSPLOG00000018264) ENSPLOG00000018191 TSC22D3 (ENSPLOG00000018050) MID2 (ENSPLOG00000017851) ENSPLOG00000017786 VSIG1 (ENSPLOG00000017528) leopard MODERN SPECIES 179 ENSPPRG00000017496 ENSPPRG00000018218 ENSPPRG00000018703 ##22 RADX (ENSPPRG00000019115) RNF128 (ENSPPRG00000019456) TBC1D8B (ENSPPRG00000019922) RIPPLY1 (ENSPPRG00000020097) CLDN2 (ENSPPRG00000010947) MORC4 (ENSPPRG00000020370) RBM41 (ENSPPRG00000021500) NUP62CL (ENSPPRG00000021569) DNAAF6 (ENSPPRG00000021937) ENSPPRG00000010952 FRMPD3 (ENSPPRG00000022116) ENSPPRG00000022459 TSC22D3 (ENSPPRG00000001159) NCBP2L (ENSPPRG00000010989) MID2 (ENSPPRG00000001211) Laurasiatheria_c ANCESTRAL SPECIES 3 ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Equus ANCESTRAL SPECIES ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Horse MODERN SPECIES 2 ITGB4 (ENSECAG00000010178) SAP30BP (ENSECAG00000025125) RECQL5 (ENSECAG00000007563) ENSECAG00000045093 MYO15B (ENSECAG00000021920) LLGL2 (ENSECAG00000008614) TSEN54 (ENSECAG00000004924) CASKIN2 (ENSECAG00000011921) TMEM94 (ENSECAG00000016214) GRB2 (ENSECAG00000010007) SLC25A19 (ENSECAG00000010421) MRPS7 (ENSECAG00000021867) MIF4GD (ENSECAG00000018586) GGA3 (ENSECAG00000004024) NUP85 (ENSECAG00000019159) ENSECAG00000030196 ##22 JPT1 (ENSECAG00000018943) ARMC7 (ENSECAG00000021003) ENSECAG00000056498 SLC16A5 (ENSECAG00000021415) ENSECAG00000008279 KCTD2 (ENSECAG00000009112) ATP5PD (ENSECAG00000009487) MRPL58 (ENSECAG00000060141) CDR2L (ENSECAG00000018760) HID1 (ENSECAG00000019664) OTOP3 (ENSECAG00000014485) OTOP2 (ENSECAG00000019575) USH1G (ENSECAG00000022788) FADS6 (ENSECAG00000047974) FDXR (ENSECAG00000009329) Chiroptera ANCESTRAL SPECIES 2 ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Microchiroptera ANCESTRAL SPECIES ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Greater horseshoe bat DUPLICATION Greater horseshoe bat MODERN SPECIES 11 MRPL47 (ENSRFEG00010021687) ACTL6A (ENSRFEG00010021704) GNB4 (ENSRFEG00010021722) MFN1 (ENSRFEG00010021730) ZNF639 (ENSRFEG00010021744) ENSRFEG00010021748 PIK3CA (ENSRFEG00010021761) ENSRFEG00010000122 ZMAT3 (ENSRFEG00010000131) KCNMB2 (ENSRFEG00010000136) TBL1XR1 (ENSRFEG00010000145) ENSRFEG00010000156 NAALADL2 (ENSRFEG00010000176) ENSRFEG00010000186 NLGN1 (ENSRFEG00010000199) ENSRFEG00010000208 ##22 SPATA16 (ENSRFEG00010000235) ENSRFEG00010000278 NCEH1 (ENSRFEG00010000317) TNFSF10 (ENSRFEG00010000343) GHSR (ENSRFEG00010000370) FNDC3B (ENSRFEG00010000387) TMEM212 (ENSRFEG00010000449) PLD1 (ENSRFEG00010000516) TNIK (ENSRFEG00010000693) SLC2A2 (ENSRFEG00010001037) EIF5A2 (ENSRFEG00010001071) ENSRFEG00010001102 SLC7A14 (ENSRFEG00010001129) CLDN11 (ENSRFEG00010001153) SKIL (ENSRFEG00010001192) Greater horseshoe bat MODERN SPECIES 13 ENSRFEG00010015848 SAP30BP (ENSRFEG00010015732) SMIM5 (ENSRFEG00010015623) RECQL5 (ENSRFEG00010015234) ENSRFEG00010013837 LLGL2 (ENSRFEG00010013729) TSEN54 (ENSRFEG00010013644) CASKIN2 (ENSRFEG00010013505) TMEM94 (ENSRFEG00010013061) GRB2 (ENSRFEG00010012913) SLC25A19 (ENSRFEG00010012851) MIF4GD (ENSRFEG00010012677) ENSRFEG00010012535 GGA3 (ENSRFEG00010012450) NUP85 (ENSRFEG00010012396) ENSRFEG00010012217 ##22 JPT1 (ENSRFEG00010012120) NT5C (ENSRFEG00010012013) ARMC7 (ENSRFEG00010011907) SLC16A5 (ENSRFEG00010011874) KCTD2 (ENSRFEG00010011745) ENSRFEG00010011680 MRPL58 (ENSRFEG00010011636) CDR2L (ENSRFEG00010011578) HID1 (ENSRFEG00010011519) OTOP3 (ENSRFEG00010011380) OTOP2 (ENSRFEG00010011192) USH1G (ENSRFEG00010011147) FADS6 (ENSRFEG00010011114) FDXR (ENSRFEG00010010488) GRIN2C (ENSRFEG00010010348) Euarchontoglires ANCESTRAL SPECIES 4 ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Euarchontoglires_A ANCESTRAL SPECIES 4 ENSGT00940000170136 ENSGT00940000165228 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Tree shrew MODERN SPECIES 10300 ENSTBEG00000005082 ##22 Glires ANCESTRAL SPECIES 3 ENSGT00940000170136 ENSGT00940000165228 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Rodentia DUPLICATION Rodentia DUPLICATION Rodentia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.a ##22 Rodentia_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.a ##22 Myomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.a ##22 Muroidea ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.a ##22 Muroidea_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.a ##22 Cricetidae ANCESTRAL SPECIES ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00940000167442 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a.i.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Cricetidae_B ANCESTRAL SPECIES ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a.i.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Prairie vole DUPLICATION Prairie vole MODERN SPECIES 354 Ccnyl1 (ENSMOCG00000016018) Fzd5 (ENSMOCG00000013581) Plekhm3 (ENSMOCG00000013149) ENSMOCG00000018497 Crygd (ENSMOCG00000018181) Crygc (ENSMOCG00000017760) ENSMOCG00000015565 ENSMOCG00000008599 IDH1 (ENSMOCG00000018153) Pikfyve (ENSMOCG00000014597) Pth2r (ENSMOCG00000006742) ENSMOCG00000016045 ENSMOCG00000014035 ENSMOCG00000022246 ENSMOCG00000017798 ENSMOCG00000006121 ##22 Unc80 (ENSMOCG00000014746) Rpe (ENSMOCG00000013941) Kansl1l (ENSMOCG00000020578) Acadl (ENSMOCG00000022401) Myl1 (ENSMOCG00000021319) Lancl1 (ENSMOCG00000017471) Cps1 (ENSMOCG00000009767) Erbb4 (ENSMOCG00000016854) Ikzf2 (ENSMOCG00000011868) ENSMOCG00000000249 Spag16 (ENSMOCG00000017743) Vwc2l (ENSMOCG00000007279) Bard1 (ENSMOCG00000017289) Abca12 (ENSMOCG00000014923) ENSMOCG00000003338 Prairie vole MODERN SPECIES 360 ENSMOCG00000006909 Ndp (ENSMOCG00000012480) Efhc2 (ENSMOCG00000021878) Fundc1 (ENSMOCG00000022023) Dusp21 (ENSMOCG00000003078) ENSMOCG00000023016 Kdm6a (ENSMOCG00000017535) Dipk2b (ENSMOCG00000000808) ENSMOCG00000001151 ENSMOCG00000010334 ENSMOCG00000020253 ENSMOCG00000010437 ##22 Chst7 (ENSMOCG00000008581) Slc9a7 (ENSMOCG00000023006) ENSMOCG00000018475 Rp2 (ENSMOCG00000016566) ENSMOCG00000013860 ENSMOCG00000008729 Jade3 (ENSMOCG00000019995) Rgn (ENSMOCG00000015014) ENSMOCG00000010653 Ndufb11 (ENSMOCG00000013805) Rbm10 (ENSMOCG00000022485) Uba1 (ENSMOCG00000016465) ENSMOCG00000005167 Gpr143 (ENSMOCG00000012839) Cldn34a (ENSMOCG00000006440) Northern American deer mouse MODERN SPECIES 21 Itgb4 (ENSPEMG00000013750) Sap30bp (ENSPEMG00000019248) Smim5 (ENSPEMG00000029199) Recql5 (ENSPEMG00000011938) ENSPEMG00000016324 Llgl2 (ENSPEMG00000008966) Tsen54 (ENSPEMG00000014857) Caskin2 (ENSPEMG00000007480) Tmem94 (ENSPEMG00000007436) Grb2 (ENSPEMG00000009134) Slc25a19 (ENSPEMG00000010997) Mif4gd (ENSPEMG00000012309) Mrps7 (ENSPEMG00000019065) Gga3 (ENSPEMG00000013193) Nup85 (ENSPEMG00000002271) ENSPEMG00000024615 ##22 Jpt1 (ENSPEMG00000018541) Nt5c (ENSPEMG00000018459) Armc7 (ENSPEMG00000015304) Slc16a5 (ENSPEMG00000012193) Trim80 (ENSPEMG00000007161) Kctd2 (ENSPEMG00000012276) ENSPEMG00000009579 Mrpl58 (ENSPEMG00000003138) Cdr2l (ENSPEMG00000027940) Hid1 (ENSPEMG00000011078) Otop3 (ENSPEMG00000012218) Otop2 (ENSPEMG00000014002) Ush1g (ENSPEMG00000016705) Fads6 (ENSPEMG00000012003) Fdxr (ENSPEMG00000007507) Lesser Egyptian jerboa MODERN SPECIES 102 Cnot1 (ENSJJAG00000000633) Slc38a7 (ENSJJAG00000021200) ENSJJAG00000022746 Got2 (ENSJJAG00000020469) ENSJJAG00000018972 ENSJJAG00000009504 #27 ENSJJAG00000001226 ENSJJAG00000014411 Cdh11 (ENSJJAG00000013192) ENSJJAG00000005625 ENSJJAG00000023995 Cdh5 (ENSJJAG00000018476) Bean1 (ENSJJAG00000011889) Tk2 (ENSJJAG00000010805) ENSJJAG00000000150 ENSJJAG00000014677 ##22 Cmtm3 (ENSJJAG00000020505) Cmtm4 (ENSJJAG00000019660) Dync1li2 (ENSJJAG00000014752) ENSJJAG00000004119 Terb1 (ENSJJAG00000021091) ENSJJAG00000013872 Nae1 (ENSJJAG00000020610) Car7 (ENSJJAG00000011532) Pdp2 (ENSJJAG00000014880) Cdh16 (ENSJJAG00000017353) Rrad (ENSJJAG00000022190) Ciao2b (ENSJJAG00000018405) ENSJJAG00000007124 ENSJJAG00000020315 ENSJJAG00000012198 Rodentia_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.a ##22 Sciuridae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.a ##22 Eurasian red squirrel MODERN SPECIES 156 NDP (ENSSVLG00005015288) EFHC2 (ENSSVLG00005015126) FUNDC1 (ENSSVLG00005015082) DUSP21 (ENSSVLG00005015061) ENSSVLG00005014404 DIPK2B (ENSSVLG00005014249) ENSSVLG00005014200 ENSSVLG00005014148 ENSSVLG00005014104 ENSSVLG00005014077 CHST7 (ENSSVLG00005014051) SLC9A7 (ENSSVLG00005013829) RP2 (ENSSVLG00005013470) JADE3 (ENSSVLG00005013403) RGN (ENSSVLG00005013231) ENSSVLG00005013138 ##22 NDUFB11 (ENSSVLG00005013046) RBM10 (ENSSVLG00005012934) UBA1 (ENSSVLG00005012610) CDK16 (ENSSVLG00005012153) USP11 (ENSSVLG00005011873) ENSSVLG00005011583 ZNF157 (ENSSVLG00005011477) ZNF41 (ENSSVLG00005011402) ENSSVLG00005011387 RBM39 (ENSSVLG00005011221) ARAF (ENSSVLG00005011146) TIMP1 (ENSSVLG00005011072) SYN1 (ENSSVLG00005011026) CFP (ENSSVLG00005010884) ELK1 (ENSSVLG00005010829) Marmotini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.a ##22 Marmotini_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.a ##22 Arctic ground squirrel MODERN SPECIES 265 RPL37A (ENSUPAG00010005317) SMARCAL1 (ENSUPAG00010005292) ENSUPAG00010005289 MARCHF4 (ENSUPAG00010005287) XRCC5 (ENSUPAG00010005275) TMEM169 (ENSUPAG00010005270) PECR (ENSUPAG00010005257) MREG (ENSUPAG00010005248) FN1 (ENSUPAG00010004397) ATIC (ENSUPAG00010004349) ABCA12 (ENSUPAG00010004294) ENSUPAG00010004290 ##22 BARD1 (ENSUPAG00010004260) VWC2L (ENSUPAG00010004248) ENSUPAG00010004229 Rodentia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.b ##22 Rodentia_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.b ##22 Myomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.b ##22 Muroidea ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.b ##22 Muroidea_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.b ##22 Cricetidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.b ##22 Cricetidae_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.b ##22 Northern American deer mouse MODERN SPECIES 15 Gal3st4 (ENSPEMG00000017373) Trappc14 (ENSPEMG00000016781) Lamtor4 (ENSPEMG00000016501) ENSPEMG00000026998 ENSPEMG00000025753 Mblac1 (ENSPEMG00000013519) Cnpy4 (ENSPEMG00000013299) Taf6 (ENSPEMG00000011578) Ap4m1 (ENSPEMG00000008418) Mcm7 (ENSPEMG00000004759) Cops6 (ENSPEMG00000000314) Zfp113 (ENSPEMG00000018945) Zscan21 (ENSPEMG00000018646) Zkscan1 (ENSPEMG00000029949) ENSPEMG00000026222 ENSPEMG00000030535 ##22 Azgp1 (ENSPEMG00000000368) Gjc3 (ENSPEMG00000014103) ENSPEMG00000027825 ENSPEMG00000027943 ENSPEMG00000025053 ENSPEMG00000014657 ENSPEMG00000024220 Or10ah1-ps1 (ENSPEMG00000004666) Rnf216 (ENSPEMG00000024259) Fscn1 (ENSPEMG00000024060) Actb (ENSPEMG00000012952) Fbxl18 (ENSPEMG00000009240) Tnrc18 (ENSPEMG00000010166) Slc29a4 (ENSPEMG00000013403) Wipi2 (ENSPEMG00000023584) Prairie vole MODERN SPECIES 354 ENSMOCG00000023037 ENSMOCG00000011127 Efna5 (ENSMOCG00000018750) ENSMOCG00000005450 ENSMOCG00000007368 Nudt12 (ENSMOCG00000005692) ENSMOCG00000015936 Macir (ENSMOCG00000018727) Ppip5k2 (ENSMOCG00000020966) Gin1 (ENSMOCG00000021884) Pam (ENSMOCG00000012283) ENSMOCG00000006301 ENSMOCG00000018358 Slco4c1 (ENSMOCG00000004368) ENSMOCG00000006288 ENSMOCG00000009291 ##22 St8sia4 (ENSMOCG00000013060) Fam174a (ENSMOCG00000015018) ENSMOCG00000003363 Pdcd1 (ENSMOCG00000014895) Neu4 (ENSMOCG00000016739) ENSMOCG00000007726 D2hgdh (ENSMOCG00000020154) Ing5 (ENSMOCG00000014178) ENSMOCG00000005204 Dtymk (ENSMOCG00000006228) Atg4b (ENSMOCG00000013012) ENSMOCG00000014492 Bok (ENSMOCG00000016270) #18 Stk25 (ENSMOCG00000017547) #17 Farp2 (ENSMOCG00000021782) #16 Murinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.b ##22 Mus ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.b ##22 Mus_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.b ##22 Mus_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.b ##22 Mus_C ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.b ##22 Steppe mouse DUPLICATION Steppe mouse MODERN SPECIES 2370 ENSMSIG00000016578 ENSMSIG00000016571 ENSMSIG00000016561 ENSMSIG00000016548 Scgb2b24 (ENSMSIG00000016507) Scgb1b24 (ENSMSIG00000016490) ENSMSIG00000016440 ENSMSIG00000016435 ENSMSIG00000016421 ENSMSIG00000016417 ##22 Scgb2b26 (ENSMSIG00000016386) Steppe mouse MODERN SPECIES 2764 Cfap418 (ENSMSIG00000015081) Plekhf2 (ENSMSIG00000015105) Ndufaf6 (ENSMSIG00000015127) ENSMSIG00000015158 ##22 Trp53inp1 (ENSMSIG00000015170) Ccne2 (ENSMSIG00000015176) Ints8 (ENSMSIG00000015213) Dpy19l4 (ENSMSIG00000015331) Esrp1 (ENSMSIG00000015467) Virma (ENSMSIG00000015653) Rad54b (ENSMSIG00000015787) ENSMSIG00000015872 Rodentia_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.b ##22 Hystricomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.b ##22 Hystricomorpha_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.b ##22 Hystricomorpha_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.b ##22 Degu MODERN SPECIES 56 ENSODEG00000006740 MACC1 (ENSODEG00000006372) ITGB8 (ENSODEG00000006123) ABCB5 (ENSODEG00000009297) SP8 (ENSODEG00000007393) SP4 (ENSODEG00000007953) DNAH11 (ENSODEG00000010213) CDCA7L (ENSODEG00000006644) RAPGEF5 (ENSODEG00000007375) HYCC1 (ENSODEG00000008398) KLHL7 (ENSODEG00000007276) GPNMB (ENSODEG00000007447) MALSU1 (ENSODEG00000008210) ENSODEG00000011195 TRA2A (ENSODEG00000008335) ENSODEG00000009301 ##22 CCDC126 (ENSODEG00000009592) ENSODEG00000009815 ENSODEG00000008091 STK31 (ENSODEG00000008172) ENSODEG00000009491 ENSODEG00000019686 ENSODEG00000019512 ENSODEG00000007836 NPY (ENSODEG00000008296) PALS2 (ENSODEG00000007676) ENSODEG00000007712 OSBPL3 (ENSODEG00000008161) ENSODEG00000007611 C7orf31 (ENSODEG00000008263) ENSODEG00000011380 Sciuridae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.b ##22 Marmotini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.b ##22 Marmotini_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.i.b ##22 Arctic ground squirrel MODERN SPECIES 535 ENSUPAG00010000599 ENSUPAG00010000633 ENSUPAG00010001697 ##22 AMER1 (ENSUPAG00010001703) ##29 ASB12 (ENSUPAG00010001705) MTMR8 (ENSUPAG00010001717) ENSUPAG00010001874 Rodentia ANCESTRAL SPECIES 4 ENSGT00390000007870 ENSGT00940000165228 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a.j ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Rodentia_A ANCESTRAL SPECIES 3 ENSGT00940000170136 ENSGT00940000157800 ENSGT00940000165228 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a.j ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Hystricomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.j ##22 Naked mole-rat female MODERN SPECIES 31 ENSHGLG00000032273 ENSHGLG00000049321 ENSHGLG00000045573 ENSHGLG00000001331 ENSHGLG00000001166 ENSHGLG00000040071 ENSHGLG00000044443 ENSHGLG00000000544 REPS2 (ENSHGLG00000002488) RBBP7 (ENSHGLG00000004020) TXLNG (ENSHGLG00000003178) SYAP1 (ENSHGLG00000001609) S100G (ENSHGLG00000042491) ENSHGLG00000008323 ENSHGLG00000038467 ENSHGLG00000000599 ##22 ENSHGLG00000033702 ENSHGLG00000046092 ENSHGLG00000046793 ENSHGLG00000003189 ENSHGLG00000046531 ENSHGLG00000002438 ZRSR2 (ENSHGLG00000003790) CA5B (ENSHGLG00000002904) CLTRN (ENSHGLG00000000704) ACE2 (ENSHGLG00000000490) BMX (ENSHGLG00000001385) PIR (ENSHGLG00000037625) VEGFD (ENSHGLG00000000833) PIGA (ENSHGLG00000001235) ASB11 (ENSHGLG00000000624) Sciuridae ANCESTRAL SPECIES 4 ENSGT00390000007870 ENSGT00940000157800 ENSGT00940000165228 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a.j ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Marmotini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.j ##22 Marmotini_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.j ##22 Squirrel MODERN SPECIES 241 GSE1 (ENSSTOG00000023594) ENSSTOG00000024743 KIAA0513 (ENSSTOG00000028748) ZDHHC7 (ENSSTOG00000002882) CRISPLD2 (ENSSTOG00000015829) USP10 (ENSSTOG00000015533) KLHL36 (ENSSTOG00000028793) COTL1 (ENSSTOG00000024619) ENSSTOG00000013915 ATP2C2 (ENSSTOG00000019541) KCNG4 (ENSSTOG00000024590) ADAD2 (ENSSTOG00000008305) DNAAF1 (ENSSTOG00000028624) HSDL1 (ENSSTOG00000020151) MBTPS1 (ENSSTOG00000008258) ENSSTOG00000034662 ##22 SLC38A8 (ENSSTOG00000008237) NECAB2 (ENSSTOG00000011331) OSGIN1 (ENSSTOG00000023978) ENSSTOG00000032786 ENSSTOG00000030876 CDH13 (ENSSTOG00000028955) Eurasian red squirrel DUPLICATION Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 156 SLC25A5 (ENSSVLG00005015540) STEEP1 (ENSSVLG00005015463) ENSSVLG00005015206 NKRF (ENSSVLG00005015133) SEPTIN6 (ENSSVLG00005015053) SOWAHD (ENSSVLG00005015012) ENSSVLG00005014976 UPF3B (ENSSVLG00005014902) RNF113A (ENSSVLG00005014872) NDUFA1 (ENSSVLG00005014840) ENSSVLG00005014815 ENSSVLG00005014769 ENSSVLG00005014730 NKAP (ENSSVLG00005014692) ENSSVLG00005014664 ENSSVLG00005014617 ##22 ZBTB33 (ENSSVLG00005014593) TMEM255A (ENSSVLG00005014430) ATP1B4 (ENSSVLG00005014140) ENSSVLG00005014061 LAMP2 (ENSSVLG00005013943) ENSSVLG00005013800 ENSSVLG00005013703 MCTS1 (ENSSVLG00005013371) ENSSVLG00005013289 ENSSVLG00005013222 ENSSVLG00005013100 ENSSVLG00005013039 GRIA3 (ENSSVLG00005012602) THOC2 (ENSSVLG00005012119) ENSSVLG00005012039 Eurasian red squirrel MODERN SPECIES 156 COL4A6 (ENSSVLG00005016702) COL4A5 (ENSSVLG00005016312) IRS4 (ENSSVLG00005016248) ENSSVLG00005016235 ENSSVLG00005016140 KCNE5 (ENSSVLG00005016121) ACSL4 (ENSSVLG00005016072) TMEM164 (ENSSVLG00005015957) AMMECR1 (ENSSVLG00005015876) RTL9 (ENSSVLG00005015811) CHRDL1 (ENSSVLG00005015623) PAK3 (ENSSVLG00005015386) CAPN6 (ENSSVLG00005015179) DCX (ENSSVLG00005015055) SERTM2 (ENSSVLG00005015020) ENSSVLG00005014968 ##22 ALG13 (ENSSVLG00005014257) ENSSVLG00005014045 ENSSVLG00005013966 TRPC5OS (ENSSVLG00005013928) TRPC5 (ENSSVLG00005013851) RTL4 (ENSSVLG00005013764) ENSSVLG00005013733 ENSSVLG00005013685 LHFPL1 (ENSSVLG00005013627) AMOT (ENSSVLG00005013525) ENSSVLG00005019330 ENSSVLG00005019275 ENSSVLG00005019228 ENSSVLG00005019177 ENSSVLG00005019126 Eurasian red squirrel MODERN SPECIES 12 ENSSVLG00005005683 SMIM5 (ENSSVLG00005005693) ENSSVLG00005005738 ENSSVLG00005005769 LLGL2 (ENSSVLG00005005886) TSEN54 (ENSSVLG00005005927) ENSSVLG00005005957 ENSSVLG00005005984 TMEM94 (ENSSVLG00005006023) GRB2 (ENSSVLG00005006170) SLC25A19 (ENSSVLG00005006227) MIF4GD (ENSSVLG00005006272) ENSSVLG00005006313 GGA3 (ENSSVLG00005006385) NUP85 (ENSSVLG00005006460) SUMO2 (ENSSVLG00005006535) ##22 JPT1 (ENSSVLG00005006588) NT5C (ENSSVLG00005006619) ENSSVLG00005006668 SLC16A5 (ENSSVLG00005006767) ENSSVLG00005006812 KCTD2 (ENSSVLG00005006860) ENSSVLG00005006875 MRPL58 (ENSSVLG00005006898) CDR2L (ENSSVLG00005006913) HID1 (ENSSVLG00005006937) OTOP3 (ENSSVLG00005006966) ENSSVLG00005007029 USH1G (ENSSVLG00005007045) FADS6 (ENSSVLG00005007069) FDXR (ENSSVLG00005007257) Rodentia_B ANCESTRAL SPECIES 1 ENSGT00390000007870 ENSGT00940000167442 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a.j ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Kangaroo rat DUPLICATION Kangaroo rat MODERN SPECIES 346 Fam20b (ENSDORG00000009526) Tor3a (ENSDORG00000009528) Abl2 (ENSDORG00000012502) ENSDORG00000026063 Soat1 (ENSDORG00000004639) ENSDORG00000004698 Nphs2 (ENSDORG00000004700) ENSDORG00000023519 Fam163a (ENSDORG00000029257) Tor1aip2 (ENSDORG00000003699) Tor1aip1 (ENSDORG00000024860) Cep350 (ENSDORG00000014486) Qsox1 (ENSDORG00000014430) Lhx4 (ENSDORG00000023280) Acbd6 (ENSDORG00000029784) ENSDORG00000026361 ##22 Xpr1 (ENSDORG00000001768) BC034090 (ENSDORG00000013926) Stx6 (ENSDORG00000003479) ENSDORG00000025443 Cacna1e (ENSDORG00000001636) ENSDORG00000028946 Glul (ENSDORG00000007158) Rgsl1 (ENSDORG00000005885) Rnasel (ENSDORG00000005886) Rgs16 (ENSDORG00000029890) Rgs8 (ENSDORG00000001314) Npl (ENSDORG00000007583) Dhx9 (ENSDORG00000012610) Shcbp1l (ENSDORG00000025921) Lamc1 (ENSDORG00000002195) Kangaroo rat MODERN SPECIES 326 Itgb4 (ENSDORG00000008126) Sap30bp (ENSDORG00000004092) Recql5 (ENSDORG00000004086) Smim6 (ENSDORG00000029816) Myo15b (ENSDORG00000004075) Llgl2 (ENSDORG00000004074) Tsen54 (ENSDORG00000004073) ENSDORG00000026597 Tmem94 (ENSDORG00000004069) Grb2 (ENSDORG00000005146) ENSDORG00000005145 Mif4gd (ENSDORG00000023600) Mrps7 (ENSDORG00000005144) ENSDORG00000024732 Nup85 (ENSDORG00000005137) ENSDORG00000027819 ##22 Jpt1 (ENSDORG00000010475) Nt5c (ENSDORG00000010472) Armc7 (ENSDORG00000024435) ENSDORG00000001932 Trim80 (ENSDORG00000029993) Kctd2 (ENSDORG00000030233) Atp5h (ENSDORG00000003319) Mrpl58 (ENSDORG00000006439) Cdr2l (ENSDORG00000026671) Hid1 (ENSDORG00000000537) Otop3 (ENSDORG00000000536) Otop2 (ENSDORG00000008742) Ush1g (ENSDORG00000008741) Fads6 (ENSDORG00000005322) ENSDORG00000005320 Myomorpha ANCESTRAL SPECIES ENSGT00390000007870 ENSGT00940000167442 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a.j ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Muroidea ANCESTRAL SPECIES ENSGT00390000007870 ENSGT00940000167442 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a.j ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Upper Galilee mountains blind mole rat MODERN SPECIES 758 Sap30bp (ENSNGAG00000020971) Recql5 (ENSNGAG00000003784) Smim5 (ENSNGAG00000024307) ENSNGAG00000011024 ENSNGAG00000017909 Llgl2 (ENSNGAG00000022098) Tsen54 (ENSNGAG00000015673) ENSNGAG00000011797 Tmem94 (ENSNGAG00000010270) Grb2 (ENSNGAG00000017171) Slc25a19 (ENSNGAG00000021538) Mif4gd (ENSNGAG00000024319) Mrps7 (ENSNGAG00000005053) ENSNGAG00000009793 Nup85 (ENSNGAG00000011000) ENSNGAG00000023558 ##22 Jpt1 (ENSNGAG00000020424) Nt5c (ENSNGAG00000020335) Armc7 (ENSNGAG00000022165) Slc16a5 (ENSNGAG00000023173) Kctd2 (ENSNGAG00000024227) Atp5h (ENSNGAG00000018801) Mrpl58 (ENSNGAG00000009226) Cdr2l (ENSNGAG00000011646) Hid1 (ENSNGAG00000021992) Otop3 (ENSNGAG00000022577) Otop2 (ENSNGAG00000003527) Ush1g (ENSNGAG00000017120) Fads6 (ENSNGAG00000017669) ENSNGAG00000019040 Grin2c (ENSNGAG00000021961) Muroidea_A ANCESTRAL SPECIES 1 ENSGT00390000007870 ENSGT00940000167442 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a.j ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Cricetidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.j ##22 Cricetidae_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.j ##22 Prairie vole MODERN SPECIES 87 Lrrc4 (ENSMOCG00000005637) Snd1 (ENSMOCG00000005040) Pax4 (ENSMOCG00000018632) Fscn3 (ENSMOCG00000005936) Arf5 (ENSMOCG00000022861) Gcc1 (ENSMOCG00000022632) ENSMOCG00000004985 ENSMOCG00000014942 Grm8 (ENSMOCG00000012255) ENSMOCG00000005667 ENSMOCG00000003837 Pot1a (ENSMOCG00000013730) Gpr37 (ENSMOCG00000004144) ENSMOCG00000000208 ENSMOCG00000020573 ENSMOCG00000004830 ##22 Tmem229a (ENSMOCG00000005436) Hyal5 (ENSMOCG00000005616) Spam1 (ENSMOCG00000019823) Hyal4 (ENSMOCG00000016868) Hyal6 (ENSMOCG00000011551) Wasl (ENSMOCG00000010725) Lmod2 (ENSMOCG00000002701) Asb15 (ENSMOCG00000020491) Ndufa5 (ENSMOCG00000007318) Iqub (ENSMOCG00000019365) Slc13a1 (ENSMOCG00000021479) Cadps2 (ENSMOCG00000022770) Fezf1 (ENSMOCG00000004729) Murinae ANCESTRAL SPECIES 6 ENSGT00390000007870 ENSGT00940000167442 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a.j ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00940000165377 Mus ANCESTRAL SPECIES 2 ENSGT00390000007870 ENSGT00940000167442 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a.j ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00940000165377 Mus_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.j ##22 Mus_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.j ##22 Mus_C ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a.j ##22 Steppe mouse MODERN SPECIES 1005 ENSMSIG00000000320 ##22 Shrew mouse MODERN SPECIES 5 Itgb4 (MGP_PahariEiJ_G0018553) Sap30bp (MGP_PahariEiJ_G0018552) Smim5 (MGP_PahariEiJ_G0018551) Recql5 (MGP_PahariEiJ_G0018550) MGP_PahariEiJ_G0018549 Llgl2 (MGP_PahariEiJ_G0018548) Tsen54 (MGP_PahariEiJ_G0018547) Caskin2 (MGP_PahariEiJ_G0018546) Tmem94 (MGP_PahariEiJ_G0018545) Grb2 (MGP_PahariEiJ_G0018544) Slc25a19 (MGP_PahariEiJ_G0018543) Mif4gd (MGP_PahariEiJ_G0018542) Mrps7 (MGP_PahariEiJ_G0018541) Gga3 (MGP_PahariEiJ_G0018540) MGP_PahariEiJ_G0018539 MGP_PahariEiJ_G0018538 ##22 Jpt1 (MGP_PahariEiJ_G0018537) Nt5c (MGP_PahariEiJ_G0018536) Armc7 (MGP_PahariEiJ_G0018535) Slc16a5 (MGP_PahariEiJ_G0018534) Trim80 (MGP_PahariEiJ_G0018533) MGP_PahariEiJ_G0018532 Atp5h (MGP_PahariEiJ_G0018531) Mrpl58 (MGP_PahariEiJ_G0018530) Cdr2l (MGP_PahariEiJ_G0018529) Hid1 (MGP_PahariEiJ_G0018528) Otop3 (MGP_PahariEiJ_G0018527) Ush1g (MGP_PahariEiJ_G0018526) Otop2 (MGP_PahariEiJ_G0018525) Fads6 (MGP_PahariEiJ_G0018524) Fdxr (MGP_PahariEiJ_G0018523) Primates ANCESTRAL SPECIES 3 ENSGT00940000157800 ENSGT00940000165228 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 Strepsirrhini ANCESTRAL SPECIES 4 ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 Lemuriformes ANCESTRAL SPECIES 2 ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 Mouse lemur MODERN SPECIES 7 ITGB4 (ENSMICG00000007555) SAP30BP (ENSMICG00000007548) RECQL5 (ENSMICG00000007529) SMIM5 (ENSMICG00000047767) MYO15B (ENSMICG00000043633) LLGL2 (ENSMICG00000007483) TSEN54 (ENSMICG00000044012) CASKIN2 (ENSMICG00000007455) TMEM94 (ENSMICG00000007421) GRB2 (ENSMICG00000007414) SLC25A19 (ENSMICG00000007405) MIF4GD (ENSMICG00000007607) MRPS7 (ENSMICG00000007599) GGA3 (ENSMICG00000007579) NUP85 (ENSMICG00000007562) SUMO2 (ENSMICG00000030533) ##22 ENSMICG00000027160 NT5C (ENSMICG00000017488) ARMC7 (ENSMICG00000043029) SLC16A5 (ENSMICG00000017486) KCTD2 (ENSMICG00000029951) ENSMICG00000041669 ATP5PD (ENSMICG00000017484) MRPL58 (ENSMICG00000010640) CDR2L (ENSMICG00000047561) HID1 (ENSMICG00000010626) OTOP3 (ENSMICG00000010616) OTOP2 (ENSMICG00000010603) USH1G (ENSMICG00000033341) FADS6 (ENSMICG00000047449) FDXR (ENSMICG00000010591) Haplorrhini ANCESTRAL SPECIES 6 ENSGT00940000157800 ENSGT00940000165228 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Simiiformes ANCESTRAL SPECIES 7 ENSGT00940000157800 ENSGT00940000165228 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00940000164172 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582.e.c ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b Catarrhini ANCESTRAL SPECIES 8 ENSGT00940000157800 ENSGT00940000165228 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00940000164172 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00910000147493 ENSGT00940000158336 ENSGT00390000003582.e.c ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b Hominoidea ANCESTRAL SPECIES 13 ENSGT00940000157800 ENSGT00940000165228 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00940000164172 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00910000147493 ENSGT00940000158336 ENSGT00390000003582.e.c.a ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Gibbon MODERN SPECIES 4 RECQL5 (ENSNLEG00000001129) SMIM6 (ENSNLEG00000030376) SMIM5 (ENSNLEG00000030736) ENSNLEG00000001105 LLGL2 (ENSNLEG00000001073) ENSNLEG00000001071 CASKIN2 (ENSNLEG00000000997) TMEM94 (ENSNLEG00000000882) GRB2 (ENSNLEG00000000865) ENSNLEG00000027839 SLC25A19 (ENSNLEG00000000813) MIF4GD (ENSNLEG00000000764) ENSNLEG00000035341 GGA3 (ENSNLEG00000000740) NUP85 (ENSNLEG00000000651) SUMO2 (ENSNLEG00000000635) ##22 JPT1 (ENSNLEG00000031174) NT5C (ENSNLEG00000000601) ARMC7 (ENSNLEG00000000591) SLC16A5 (ENSNLEG00000000580) ENSNLEG00000032027 ENSNLEG00000000549 ATP5PD (ENSNLEG00000000561) MRPL58 (ENSNLEG00000027867) ENSNLEG00000027721 HID1 (ENSNLEG00000000527) OTOP3 (ENSNLEG00000000526) OTOP2 (ENSNLEG00000000518) USH1G (ENSNLEG00000000511) ENSNLEG00000010577 FDXR (ENSNLEG00000010483) Hominidae ANCESTRAL SPECIES 16 ENSGT00940000165228 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000161656.r ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00910000147493 ENSGT00940000158336 ENSGT00390000003582.e.c.a ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b Homo/Pan/Gorilla group ANCESTRAL SPECIES 1 ENSGT00940000165228 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000161656.r ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00910000147493 ENSGT00940000158336 ENSGT00390000003582.e.c.a ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Homo/Pan group ANCESTRAL SPECIES 2 ENSGT00940000165228 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000161656.r ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00910000147493 ENSGT00940000158336 ENSGT00390000003582.e.c.a ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Human MODERN SPECIES 8 SAP30BP (ENSG00000161526) SMIM6 (ENSG00000259120) SMIM5 (ENSG00000204323) RECQL5 (ENSG00000108469) MYO15B (ENSG00000266714) LLGL2 (ENSG00000073350) TSEN54 (ENSG00000182173) CASKIN2 (ENSG00000177303) TMEM94 (ENSG00000177728) GRB2 (ENSG00000177885) SLC25A19 (ENSG00000125454) MIF4GD (ENSG00000125457) MRPS7 (ENSG00000125445) GGA3 (ENSG00000125447) NUP85 (ENSG00000125450) SUMO2 (ENSG00000188612) ##22 JPT1 (ENSG00000189159) NT5C (ENSG00000125458) ARMC7 (ENSG00000125449) SLC16A5 (ENSG00000170190) ATP5PD (ENSG00000167863) KCTD2 (ENSG00000180901) MRPL58 (ENSG00000167862) CDR2L (ENSG00000109089) HID1 (ENSG00000167861) OTOP3 (ENSG00000182938) OTOP2 (ENSG00000183034) USH1G (ENSG00000182040) FADS6 (ENSG00000172782) FDXR (ENSG00000161513) GRIN2C (ENSG00000161509) Gorilla DUPLICATION Gorilla MODERN SPECIES TIMM17A (ENSGGOG00000008415) RNPEP (ENSGGOG00000014172) ELF3 (ENSGGOG00000014183) GPR37L1 (ENSGGOG00000003800) ARL8A (ENSGGOG00000027790) ENSGGOG00000016520 LGR6 (ENSGGOG00000005825) ENSGGOG00000036307 ENSGGOG00000039199 PPP1R12B (ENSGGOG00000004481) ENSGGOG00000036878 SYT2 (ENSGGOG00000004495) ENSGGOG00000003073 ENSGGOG00000036303 ENSGGOG00000042860 ENSGGOG00000022374 ##22 RABIF (ENSGGOG00000003438) KLHL12 (ENSGGOG00000009159) ADIPOR1 (ENSGGOG00000005131) CYB5R1 (ENSGGOG00000005136) ENSGGOG00000039922 TMEM183A (ENSGGOG00000009834) PPFIA4 (ENSGGOG00000013912) MYOG (ENSGGOG00000002115) ADORA1 (ENSGGOG00000009895) MYBPH (ENSGGOG00000009899) CHI3L1 (ENSGGOG00000009912) CHIT1 (ENSGGOG00000011183) BTG2 (ENSGGOG00000001857) FMOD (ENSGGOG00000011874) ENSGGOG00000038088 Gorilla MODERN SPECIES 18 SAP30BP (ENSGGOG00000009499) RECQL5 (ENSGGOG00000009481) SMIM6 (ENSGGOG00000037869) SMIM5 (ENSGGOG00000009493) MYO15B (ENSGGOG00000009450) LLGL2 (ENSGGOG00000009428) TSEN54 (ENSGGOG00000009417) CASKIN2 (ENSGGOG00000009406) TMEM94 (ENSGGOG00000009391) GRB2 (ENSGGOG00000006122) SLC25A19 (ENSGGOG00000025764) MIF4GD (ENSGGOG00000028603) MRPS7 (ENSGGOG00000007640) GGA3 (ENSGGOG00000007634) NUP85 (ENSGGOG00000006439) ENSGGOG00000023769 ##22 ENSGGOG00000013996 NT5C (ENSGGOG00000004740) ARMC7 (ENSGGOG00000004736) SLC16A5 (ENSGGOG00000024914) KCTD2 (ENSGGOG00000013721) ATP5PD (ENSGGOG00000013716) MRPL58 (ENSGGOG00000012341) CDR2L (ENSGGOG00000012329) HID1 (ENSGGOG00000003327) OTOP3 (ENSGGOG00000003322) OTOP2 (ENSGGOG00000003317) USH1G (ENSGGOG00000003315) FADS6 (ENSGGOG00000003310) FDXR (ENSGGOG00000003306) GRIN2C (ENSGGOG00000003299) Cercopithecidae ANCESTRAL SPECIES 6 ENSGT00940000157800 ENSGT00940000165228 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00940000162422.c ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00910000147493 ENSGT00940000158336 ENSGT00390000003582.e.c ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b Cercopithecinae ANCESTRAL SPECIES 4 ENSGT00940000157800 ENSGT00940000165228 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00940000162422.c ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000158336.y ENSGT00390000003582.e.c.c.a ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Vervet Monkey MODERN SPECIES 7 RECQL5 (ENSCSAG00000004842) SMIM6 (ENSCSAG00000000540) SMIM5 (ENSCSAG00000004839) ENSCSAG00000004836 ENSCSAG00000004826 LLGL2 (ENSCSAG00000004819) TSEN54 (ENSCSAG00000004809) CASKIN2 (ENSCSAG00000004791) TMEM94 (ENSCSAG00000004752) GRB2 (ENSCSAG00000004740) SLC25A19 (ENSCSAG00000004737) MIF4GD (ENSCSAG00000004732) MRPS7 (ENSCSAG00000004729) GGA3 (ENSCSAG00000004725) NUP85 (ENSCSAG00000004716) SUMO2 (ENSCSAG00000004710) ##22 JPT1 (ENSCSAG00000004706) NT5C (ENSCSAG00000004700) ARMC7 (ENSCSAG00000004696) SLC16A5 (ENSCSAG00000004692) KCTD2 (ENSCSAG00000004686) ENSCSAG00000004661 MRPL58 (ENSCSAG00000004656) CDR2L (ENSCSAG00000004653) HID1 (ENSCSAG00000004649) OTOP3 (ENSCSAG00000004647) OTOP2 (ENSCSAG00000004631) USH1G (ENSCSAG00000004630) FDXR (ENSCSAG00000004628) GRIN2C (ENSCSAG00000004623) TMEM104 (ENSCSAG00000004619) Cercopithecinae_a ANCESTRAL SPECIES 4 ENSGT00390000007870 ENSGT00940000157800 ENSGT00940000165228 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000158336.y ENSGT00390000003582.e.c.c.a.b ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Cercopithecinae_b ANCESTRAL SPECIES 19 ENSGT00940000157800 ENSGT00940000165228 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b.j.a.b #22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000158336.y ENSGT00390000003582.e.c.c.a.b ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Cercopithecinae_d ANCESTRAL SPECIES 15 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT01100000263915.D ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b.j.a.b #22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000158336.y ENSGT00390000003582.e.c.c.a.b ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Sooty mangabey MODERN SPECIES 519 SAP30BP (ENSCATG00000040200) RECQL5 (ENSCATG00000029763) SMIM5 (ENSCATG00000040629) MYO15B (ENSCATG00000035616) LLGL2 (ENSCATG00000030748) TSEN54 (ENSCATG00000042877) CASKIN2 (ENSCATG00000042009) TMEM94 (ENSCATG00000039566) GRB2 (ENSCATG00000043959) ENSCATG00000033370 SLC25A19 (ENSCATG00000039036) MIF4GD (ENSCATG00000029614) MRPS7 (ENSCATG00000045102) GGA3 (ENSCATG00000043233) NUP85 (ENSCATG00000033341) SUMO2 (ENSCATG00000039593) ##22 ENSCATG00000037252 ENSCATG00000041230 NT5C (ENSCATG00000041466) ARMC7 (ENSCATG00000034881) SLC16A5 (ENSCATG00000041324) KCTD2 (ENSCATG00000035978) ATP5PD (ENSCATG00000044338) MRPL58 (ENSCATG00000039315) CDR2L (ENSCATG00000044717) HID1 (ENSCATG00000037404) OTOP3 (ENSCATG00000039817) OTOP2 (ENSCATG00000029892) USH1G (ENSCATG00000036418) FADS6 (ENSCATG00000031301) FDXR (ENSCATG00000045260) Macaca ANCESTRAL SPECIES 4 ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000158336.y ENSGT00390000003582.e.c.c.a.b ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Pig-tailed macaque DUPLICATION Pig-tailed macaque MODERN SPECIES 169 ENSMNEG00000036060 ENSMNEG00000008722 MEIG1 (ENSMNEG00000043263) DCLRE1C (ENSMNEG00000030932) ENSMNEG00000028382 HSPA14 (ENSMNEG00000033128) CDNF (ENSMNEG00000035877) FAM107B (ENSMNEG00000005393) FRMD4A (ENSMNEG00000028790) PRPF18 (ENSMNEG00000024679) ENSMNEG00000039551 SEPHS1 (ENSMNEG00000041342) PHYH (ENSMNEG00000003535) ENSMNEG00000031768 ##22 UCMA (ENSMNEG00000042078) MCM10 (ENSMNEG00000032426) ENSMNEG00000028929 OPTN (ENSMNEG00000042124) CCDC3 (ENSMNEG00000043714) ENSMNEG00000009115 CAMK1D (ENSMNEG00000040028) CDC123 (ENSMNEG00000033059) NUDT5 (ENSMNEG00000042385) SEC61A2 (ENSMNEG00000040329) DHTKD1 (ENSMNEG00000038335) ENSMNEG00000008062 ENSMNEG00000035275 PROSER2 (ENSMNEG00000044048) ECHDC3 (ENSMNEG00000038664) Pig-tailed macaque MODERN SPECIES 432 ITGB4 (ENSMNEG00000036570) SAP30BP (ENSMNEG00000032576) SMIM5 (ENSMNEG00000032209) RECQL5 (ENSMNEG00000040154) MYO15B (ENSMNEG00000025709) LLGL2 (ENSMNEG00000028345) TSEN54 (ENSMNEG00000029199) CASKIN2 (ENSMNEG00000027134) TMEM94 (ENSMNEG00000031672) GRB2 (ENSMNEG00000036872) SLC25A19 (ENSMNEG00000036328) MIF4GD (ENSMNEG00000022755) MRPS7 (ENSMNEG00000022424) GGA3 (ENSMNEG00000042786) NUP85 (ENSMNEG00000044484) SUMO2 (ENSMNEG00000038857) ##22 ENSMNEG00000027180 ENSMNEG00000045237 NT5C (ENSMNEG00000043250) ARMC7 (ENSMNEG00000029167) SLC16A5 (ENSMNEG00000032858) KCTD2 (ENSMNEG00000043783) ATP5PD (ENSMNEG00000040945) MRPL58 (ENSMNEG00000030999) CDR2L (ENSMNEG00000037186) HID1 (ENSMNEG00000042455) OTOP3 (ENSMNEG00000039783) OTOP2 (ENSMNEG00000043069) USH1G (ENSMNEG00000031817) FADS6 (ENSMNEG00000043491) FDXR (ENSMNEG00000038325) Platyrrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a ##22 Cebidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a ##22 Cebidae_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a ##22 Bolivian squirrel monkey DUPLICATION Bolivian squirrel monkey MODERN SPECIES 52 HECTD1 (ENSSBOG00000026436) AP4S1 (ENSSBOG00000026649) STRN3 (ENSSBOG00000023010) COCH (ENSSBOG00000011793) SCFD1 (ENSSBOG00000031363) G2E3 (ENSSBOG00000028363) PRKD1 (ENSSBOG00000035413) ENSSBOG00000034922 ENSSBOG00000009503 ENSSBOG00000029497 NOVA1 (ENSSBOG00000034029) ENSSBOG00000033503 STXBP6 (ENSSBOG00000022536) GZMB (ENSSBOG00000016642) GZMH (ENSSBOG00000026395) ENSSBOG00000019753 ##22 CTSG (ENSSBOG00000030717) CMA1 (ENSSBOG00000022372) SDR39U1 (ENSSBOG00000026778) KHNYN (ENSSBOG00000036159) CBLN3 (ENSSBOG00000036062) NYNRIN (ENSSBOG00000023644) NFATC4 (ENSSBOG00000027759) RIPK3 (ENSSBOG00000025521) ADCY4 (ENSSBOG00000035365) LTB4R2 (ENSSBOG00000015805) CIDEB (ENSSBOG00000036130) NOP9 (ENSSBOG00000033886) DHRS1 (ENSSBOG00000035073) RABGGTA (ENSSBOG00000024958) TGM1 (ENSSBOG00000035351) Bolivian squirrel monkey MODERN SPECIES 52 RPGRIP1 (ENSSBOG00000022970) ENSSBOG00000024757 ENSSBOG00000013901 TMEM253 (ENSSBOG00000033526) ZNF219 (ENSSBOG00000035585) ARHGEF40 (ENSSBOG00000023831) NDRG2 (ENSSBOG00000018409) RNASE8 (ENSSBOG00000035350) TPPP2 (ENSSBOG00000020635) SLC39A2 (ENSSBOG00000031319) METTL17 (ENSSBOG00000020679) ENSSBOG00000007632 RNASE4 (ENSSBOG00000033190) ENSSBOG00000034234 DAAM1 (ENSSBOG00000034447) ENSSBOG00000020505 ##22 L3HYPDH (ENSSBOG00000032716) GPR135 (ENSSBOG00000028057) JKAMP (ENSSBOG00000017743) CCDC175 (ENSSBOG00000031269) RTN1 (ENSSBOG00000024299) LRRC9 (ENSSBOG00000018868) PCNX4 (ENSSBOG00000019535) DHRS7 (ENSSBOG00000031180) PPM1A (ENSSBOG00000033152) C14orf39 (ENSSBOG00000031723) SIX6 (ENSSBOG00000033001) SIX1 (ENSSBOG00000021555) SIX4 (ENSSBOG00000034120) ENSSBOG00000020551 TRMT5 (ENSSBOG00000027786) Atlantogenata ANCESTRAL SPECIES 21 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Xenarthra ANCESTRAL SPECIES 4 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800.h ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 ENSGT00940000156964.C ENSGT00390000001244 ENSGT00390000012745 ENSGT00950000182849.B.c.b Armadillo DUPLICATION Armadillo MODERN SPECIES 2650 ENSDNOG00000048521 ENSDNOG00000049373 ENSDNOG00000048580 ##22 ENSDNOG00000015725 ENSDNOG00000049776 FER1L6 (ENSDNOG00000024981) FAM91A1 (ENSDNOG00000031614) ENSDNOG00000040404 ANXA13 (ENSDNOG00000012437) KLHL38 (ENSDNOG00000042298) FBXO32 (ENSDNOG00000012410) NTAQ1 (ENSDNOG00000041867) ENSDNOG00000039877 ATAD2 (ENSDNOG00000044383) Armadillo MODERN SPECIES 2093 SMIM6 (ENSDNOG00000045491) SMIM5 (ENSDNOG00000034543) ENSDNOG00000031337 ENSDNOG00000012811 LLGL2 (ENSDNOG00000016103) TSEN54 (ENSDNOG00000018452) CASKIN2 (ENSDNOG00000047838) TMEM94 (ENSDNOG00000018438) ENSDNOG00000012814 SLC25A19 (ENSDNOG00000043697) MIF4GD (ENSDNOG00000049606) MRPS7 (ENSDNOG00000033064) GGA3 (ENSDNOG00000018521) NUP85 (ENSDNOG00000018516) SUMO2 (ENSDNOG00000047599) ##22 JPT1 (ENSDNOG00000045713) NT5C (ENSDNOG00000018512) ARMC7 (ENSDNOG00000031804) SLC16A5 (ENSDNOG00000047126) ENSDNOG00000044728 ENSDNOG00000047118 ENSDNOG00000039702 ENSDNOG00000041869 MRPL58 (ENSDNOG00000013172) CDR2L (ENSDNOG00000045859) OTOP3 (ENSDNOG00000047116) OTOP2 (ENSDNOG00000033307) USH1G (ENSDNOG00000040120) FADS6 (ENSDNOG00000031037) FDXR (ENSDNOG00000046034) Afrotheria ANCESTRAL SPECIES 18 ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Afrotheria_a ANCESTRAL SPECIES 25 ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000174605 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Elephant DUPLICATION Elephant MODERN SPECIES 453 KDM6A (ENSLAFG00000014811) DUSP21 (ENSLAFG00000021812) FUNDC1 (ENSLAFG00000015232) EFHC2 (ENSLAFG00000013146) NDP (ENSLAFG00000007780) MAOB (ENSLAFG00000015027) MAOA (ENSLAFG00000000503) PPP1R2C (ENSLAFG00000004738) CASK (ENSLAFG00000006945) GPR82 (ENSLAFG00000006951) GPR34 (ENSLAFG00000006949) NYX (ENSLAFG00000015300) DDX3X (ENSLAFG00000017378) ENSLAFG00000017387 USP9X (ENSLAFG00000008552) ENSLAFG00000027634 ##22 MED14 (ENSLAFG00000012068) CXorf38 (ENSLAFG00000012064) MPC1L (ENSLAFG00000027876) ATP6AP2 (ENSLAFG00000017858) ENSLAFG00000030399 BCOR (ENSLAFG00000014446) MID1IP1 (ENSLAFG00000030491) TSPAN7 (ENSLAFG00000006016) OTC (ENSLAFG00000009919) ENSLAFG00000023163 SRPX (ENSLAFG00000002956) Elephant MODERN SPECIES 424 RECQL5 (ENSLAFG00000008491) SMIM5 (ENSLAFG00000025822) ENSLAFG00000028478 ENSLAFG00000008488 ENSLAFG00000008472 LLGL2 (ENSLAFG00000011663) TSEN54 (ENSLAFG00000011655) CASKIN2 (ENSLAFG00000002671) TMEM94 (ENSLAFG00000008667) GRB2 (ENSLAFG00000005924) SLC25A19 (ENSLAFG00000002874) ENSLAFG00000032680 MRPS7 (ENSLAFG00000002873) GGA3 (ENSLAFG00000002869) NUP85 (ENSLAFG00000002866) ENSLAFG00000025811 ##22 JPT1 (ENSLAFG00000011436) NT5C (ENSLAFG00000027313) ENSLAFG00000011434 SLC16A5 (ENSLAFG00000027329) ENSLAFG00000030560 KCTD2 (ENSLAFG00000000274) ATP5PD (ENSLAFG00000000273) MRPL58 (ENSLAFG00000000272) CDR2L (ENSLAFG00000028242) ENSLAFG00000031005 OTOP3 (ENSLAFG00000028210) OTOP2 (ENSLAFG00000025872) USH1G (ENSLAFG00000016103) FADS6 (ENSLAFG00000021460) ENSLAFG00000029183 Marsupialia ANCESTRAL SPECIES 13 ENSGT01100000263555.b ENSGT00390000007870.a ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.w ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Opossum MODERN SPECIES 1 ITGB4 (ENSMODG00000007605) ENSMODG00000007562 RECQL5 (ENSMODG00000007532) SMIM5 (ENSMODG00000048664) LLGL2 (ENSMODG00000007477) TSEN54 (ENSMODG00000007438) ENSMODG00000039897 ENSMODG00000007426 TMEM94 (ENSMODG00000007405) GRB2 (ENSMODG00000007342) SLC25A19 (ENSMODG00000007328) MIF4GD (ENSMODG00000007305) MRPS7 (ENSMODG00000007290) ENSMODG00000007282 NUP85 (ENSMODG00000007246) ENSMODG00000007222 ##22 JPT1 (ENSMODG00000049425) NT5C (ENSMODG00000007187) ENSMODG00000040351 SLC16A5 (ENSMODG00000007170) ENSMODG00000007158 KCTD2 (ENSMODG00000007146) ENSMODG00000042917 MRPL58 (ENSMODG00000037852) CDR2L (ENSMODG00000007121) HID1 (ENSMODG00000007110) ENSMODG00000041241 OTOP2 (ENSMODG00000007054) USH1G (ENSMODG00000007035) FADS6 (ENSMODG00000049018) FDXR (ENSMODG00000006942) Marsupialia_b ANCESTRAL SPECIES 16 ENSGT00390000007870.a ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b #22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.w ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Diprotodontia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a ##22 Diprotodontia_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.a ##22 koala MODERN SPECIES 110 ENSPCIG00000029158 RB1CC1 (ENSPCIG00000029159) ENSPCIG00000030880 NPBWR1 (ENSPCIG00000016798) OPRK1 (ENSPCIG00000011789) ATP6V1H (ENSPCIG00000011788) ENSPCIG00000011787 ENSPCIG00000011786 LYPLA1 (ENSPCIG00000011784) MRPL15 (ENSPCIG00000011783) ENSPCIG00000024928 ##22 ENSPCIG00000011782 ENSPCIG00000011781 ENSPCIG00000011774 TMEM68 (ENSPCIG00000016228) TGS1 (ENSPCIG00000016232) LYN (ENSPCIG00000016237) RPS20 (ENSPCIG00000011576) MOS (ENSPCIG00000011573) PLAG1 (ENSPCIG00000011571) CHCHD7 (ENSPCIG00000011568) SDR16C5 (ENSPCIG00000011567) PENK (ENSPCIG00000016638) BPNT2 (ENSPCIG00000013018) FAM110B (ENSPCIG00000013271) UBXN2B (ENSPCIG00000005156) Tasmanian devil MODERN SPECIES 3 ITGB4 (ENSSHAG00000017802) ENSSHAG00000017878 SMIM5 (ENSSHAG00000028583) RECQL5 (ENSSHAG00000017920) ENSSHAG00000017966 TSEN54 (ENSSHAG00000018127) LLGL2 (ENSSHAG00000018050) CASKIN2 (ENSSHAG00000018149) TMEM94 (ENSSHAG00000018166) GRB2 (ENSSHAG00000026665) SLC25A19 (ENSSHAG00000022591) MIF4GD (ENSSHAG00000018448) MRPS7 (ENSSHAG00000018455) GGA3 (ENSSHAG00000018474) NUP85 (ENSSHAG00000018482) ENSSHAG00000029507 ##22 JPT1 (ENSSHAG00000021719) NT5C (ENSSHAG00000030768) ENSSHAG00000020819 SLC16A5 (ENSSHAG00000015780) ENSSHAG00000018677 KCTD2 (ENSSHAG00000018698) ATP5PD (ENSSHAG00000018708) MRPL58 (ENSSHAG00000026523) CDR2L (ENSSHAG00000027149) HID1 (ENSSHAG00000018760) OTOP3 (ENSSHAG00000018772) OTOP2 (ENSSHAG00000018773) USH1G (ENSSHAG00000025760) FADS6 (ENSSHAG00000018799) FDXR (ENSSHAG00000018811) Sauria ANCESTRAL SPECIES 30 ENSGT00520000062027 ENSGT00940000157800 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Lepidosauria ANCESTRAL SPECIES 26 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Episquamata ANCESTRAL SPECIES 4 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Laterata ANCESTRAL SPECIES 1 ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000168469 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00940000165377 Argentine black and white tegu MODERN SPECIES 1 SAP30BP (ENSSMRG00000023186) RECQL5 (ENSSMRG00000023187) SMIM5 (ENSSMRG00000023188) ENSSMRG00000023189 LLGL2 (ENSSMRG00000023193) TSEN54 (ENSSMRG00000023194) ENSSMRG00000023195 CASKIN2 (ENSSMRG00000023196) TMEM94 (ENSSMRG00000023197) GRB2 (ENSSMRG00000023198) SLC25A19 (ENSSMRG00000023199) MIF4GD (ENSSMRG00000023200) MRPS7 (ENSSMRG00000023201) GGA3 (ENSSMRG00000023202) NUP85 (ENSSMRG00000023203) SUMO2 (ENSSMRG00000023204) ##22 JPT1 (ENSSMRG00000023205) NT5C (ENSSMRG00000023206) ENSSMRG00000023207 SLC16A5 (ENSSMRG00000023208) ENSSMRG00000023209 KCTD2 (ENSSMRG00000023210) ATP5PD (ENSSMRG00000023211) MRPL58 (ENSSMRG00000023212) CDR2L (ENSSMRG00000023213) HID1 (ENSSMRG00000023214) OTOP3 (ENSSMRG00000023215) OTOP2 (ENSSMRG00000023216) USH1G (ENSSMRG00000023217) FADS6 (ENSSMRG00000023219) ENSSMRG00000023220 Toxicofera ANCESTRAL SPECIES 3 ENSGT00940000157800 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Elapidae ANCESTRAL SPECIES 2 ENSGT00940000157800 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Indian cobra MODERN SPECIES 1 SAP30BP (ENSNNAG00000019172) RECQL5 (ENSNNAG00000019174) ENSNNAG00000019175 ENSNNAG00000019176 LLGL2 (ENSNNAG00000019178) TSEN54 (ENSNNAG00000019179) ENSNNAG00000019180 ENSNNAG00000019181 TMEM94 (ENSNNAG00000019184) GRB2 (ENSNNAG00000019185) SLC25A19 (ENSNNAG00000019186) MIF4GD (ENSNNAG00000019187) MRPS7 (ENSNNAG00000019188) GGA3 (ENSNNAG00000019189) NUP85 (ENSNNAG00000019190) SUMO2 (ENSNNAG00000019191) ##22 JPT1 (ENSNNAG00000019192) NT5C (ENSNNAG00000019193) ENSNNAG00000019194 SLC16A5 (ENSNNAG00000019195) ENSNNAG00000006833 ENSNNAG00000006841 ATP5PD (ENSNNAG00000006850) MRPL58 (ENSNNAG00000006860) CDR2L (ENSNNAG00000006868) HID1 (ENSNNAG00000006895) OTOP3 (ENSNNAG00000006914) OTOP2 (ENSNNAG00000006945) USH1G (ENSNNAG00000006983) FADS6 (ENSNNAG00000006997) FDXR (ENSNNAG00000007067) Elapidae_a ANCESTRAL SPECIES 18 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a.e ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Acanthophiinae ANCESTRAL SPECIES 18 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a.e ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Eastern brown snake MODERN SPECIES 17 ITGB4 (ENSPTXG00000002287) SAP30BP (ENSPTXG00000002286) ENSPTXG00000002284 RECQL5 (ENSPTXG00000002283) ENSPTXG00000002282 LLGL2 (ENSPTXG00000002281) TSEN54 (ENSPTXG00000002279) CASKIN2 (ENSPTXG00000002272) TMEM94 (ENSPTXG00000002265) GRB2 (ENSPTXG00000002258) SLC25A19 (ENSPTXG00000002255) ENSPTXG00000002253 MRPS7 (ENSPTXG00000002252) GGA3 (ENSPTXG00000001006) NUP85 (ENSPTXG00000000968) SUMO2 (ENSPTXG00000000963) ##22 JPT1 (ENSPTXG00000000960) NT5C (ENSPTXG00000000955) ENSPTXG00000000951 SLC16A5 (ENSPTXG00000000948) ENSPTXG00000000942 KCTD2 (ENSPTXG00000000938) ATP5PD (ENSPTXG00000000935) MRPL58 (ENSPTXG00000000932) CDR2L (ENSPTXG00000000930) HID1 (ENSPTXG00000000921) OTOP3 (ENSPTXG00000000913) OTOP2 (ENSPTXG00000000908) USH1G (ENSPTXG00000000906) FADS6 (ENSPTXG00000000903) FDXR (ENSPTXG00000000899) Archelosauria ANCESTRAL SPECIES 19 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Cryptodira ANCESTRAL SPECIES 21 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Chinese turtle MODERN SPECIES 2110 ENSPSIG00000005098 ENSPSIG00000004729 ENSPSIG00000004008 ENSPSIG00000000729 LLGL2 (ENSPSIG00000012845) TSEN54 (ENSPSIG00000012807) ENSPSIG00000000715 CASKIN2 (ENSPSIG00000011273) TMEM94 (ENSPSIG00000009656) GRB2 (ENSPSIG00000009206) SLC25A19 (ENSPSIG00000008607) MIF4GD (ENSPSIG00000008599) MRPS7 (ENSPSIG00000008421) GGA3 (ENSPSIG00000007599) NUP85 (ENSPSIG00000006537) SUMO2 (ENSPSIG00000006335) ##22 JPT1 (ENSPSIG00000006194) NT5C (ENSPSIG00000005991) ENSPSIG00000005920 SLC16A5 (ENSPSIG00000005592) ENSPSIG00000005375 KCTD2 (ENSPSIG00000005163) ATP5PD (ENSPSIG00000005018) ENSPSIG00000004861 ENSPSIG00000004838 MRPL58 (ENSPSIG00000004736) CDR2L (ENSPSIG00000004675) HID1 (ENSPSIG00000004631) OTOP3 (ENSPSIG00000004584) USH1G (ENSPSIG00000004578) FADS6 (ENSPSIG00000004472) Archosauria ANCESTRAL SPECIES 12 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Australian saltwater crocodile MODERN SPECIES 47 ENSCPRG00005004608 ENSCPRG00005004593 LLGL2 (ENSCPRG00005004571) TSEN54 (ENSCPRG00005004562) ENSCPRG00005004559 ENSCPRG00005004552 TMEM94 (ENSCPRG00005004119) GRB2 (ENSCPRG00005004058) SLC25A19 (ENSCPRG00005004003) MIF4GD (ENSCPRG00005003995) MRPS7 (ENSCPRG00005003989) GGA3 (ENSCPRG00005003715) NUP85 (ENSCPRG00005003356) ENSCPRG00005003329 ENSCPRG00005003326 SUMO2 (ENSCPRG00005003318) ##22 JPT1 (ENSCPRG00005003313) NT5C (ENSCPRG00005003308) ENSCPRG00005003293 SLC16A5 (ENSCPRG00005003289) ENSCPRG00005003273 KCTD2 (ENSCPRG00005003265) ATP5PD (ENSCPRG00005003260) ENSCPRG00005003257 MRPL58 (ENSCPRG00005003240) CDR2L (ENSCPRG00005003236) HID1 (ENSCPRG00005003227) OTOP3 (ENSCPRG00005003222) OTOP2 (ENSCPRG00005003217) USH1G (ENSCPRG00005003208) FADS6 (ENSCPRG00005003205) Aves ANCESTRAL SPECIES 17 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Neognathae ANCESTRAL SPECIES 17 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Galloanserae ANCESTRAL SPECIES 19 ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B.k.b ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 ENSGT00940000156964.C Phasianidae ANCESTRAL SPECIES 18 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638.s ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 ENSGT00940000156964.C Japanese quail MODERN SPECIES 9 LLGL2 (ENSCJPG00005000501) TSEN54 (ENSCJPG00005000459) MCHR1 (ENSCJPG00005000452) CASKIN2 (ENSCJPG00005000438) TMEM94 (ENSCJPG00005000082) GRB2 (ENSCJPG00005000047) SLC25A19 (ENSCJPG00005021562) MIF4GD (ENSCJPG00005021561) MRPS7 (ENSCJPG00005021560) ENSCJPG00005021559 GGA3 (ENSCJPG00005021558) NUP85 (ENSCJPG00005021557) SUMO2 (ENSCJPG00005021556) ##22 JPT1 (ENSCJPG00005021555) SLC16A5 (ENSCJPG00005021554) KCTD2 (ENSCJPG00005021553) ATP5PD (ENSCJPG00005021552) MRPL58 (ENSCJPG00005021551) CDR2L (ENSCJPG00005021550) HID1 (ENSCJPG00005021549) OTOP3 (ENSCJPG00005021548) OTOP2 (ENSCJPG00005021547) USH1G (ENSCJPG00005021546) FADS6 (ENSCJPG00005021545) FDXR (ENSCJPG00005021544) GRIN2C (ENSCJPG00005021542) TMEM104 (ENSCJPG00005021541) NAT9 (ENSCJPG00005021540) Anatidae ANCESTRAL SPECIES 18 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B.k.b ENSGT00930000151032.B.l ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00960000189697 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000167542 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 ENSGT00940000156964.C ENSGT00390000001244 Duck MODERN SPECIES 9 SMIM5 (ENSAPLG00000020078) RECQL5 (ENSAPLG00000011106) ENSAPLG00000010900 LLGL2 (ENSAPLG00000009521) TSEN54 (ENSAPLG00000009419) ENSAPLG00000001391 ENSAPLG00000028233 TMEM94 (ENSAPLG00000008675) ENSAPLG00000030191 GRB2 (ENSAPLG00000008555) SLC25A19 (ENSAPLG00000024769) MIF4GD (ENSAPLG00000025678) MRPS7 (ENSAPLG00000007763) GGA3 (ENSAPLG00000007358) NUP85 (ENSAPLG00000007065) SUMO2 (ENSAPLG00000006800) ##22 JPT1 (ENSAPLG00000017876) ENSAPLG00000006788 SLC16A5 (ENSAPLG00000006741) KCTD2 (ENSAPLG00000006279) ENSAPLG00000006404 ENSAPLG00000006285 CDR2L (ENSAPLG00000006222) HID1 (ENSAPLG00000005782) OTOP3 (ENSAPLG00000005532) OTOP2 (ENSAPLG00000005251) USH1G (ENSAPLG00000005245) FADS6 (ENSAPLG00000005172) FDXR (ENSAPLG00000004911) GRIN2C (ENSAPLG00000004598) TMEM104 (ENSAPLG00000004556) Pink-footed goose MODERN SPECIES 34 SMIM5 (ENSABRG00000017098) RECQL5 (ENSABRG00000017078) ENSABRG00000017025 LLGL2 (ENSABRG00000017009) TSEN54 (ENSABRG00000017003) ENSABRG00000016999 ENSABRG00000016995 TMEM94 (ENSABRG00000016787) ENSABRG00000016758 GRB2 (ENSABRG00000016750) SLC25A19 (ENSABRG00000016719) MIF4GD (ENSABRG00000016713) MRPS7 (ENSABRG00000016711) GGA3 (ENSABRG00000016391) NUP85 (ENSABRG00000015897) SUMO2 (ENSABRG00000015839) ##22 JPT1 (ENSABRG00000015835) ENSABRG00000015833 SLC16A5 (ENSABRG00000015801) KCTD2 (ENSABRG00000015786) ATP5PD (ENSABRG00000015782) ENSABRG00000015779 CDR2L (ENSABRG00000015777) HID1 (ENSABRG00000015738) OTOP3 (ENSABRG00000015731) OTOP2 (ENSABRG00000015707) USH1G (ENSABRG00000015700) FDXR (ENSABRG00000015691) GRIN2C (ENSABRG00000015675) NAT9 (ENSABRG00000015671) TMEM104 (ENSABRG00000015670) Neognathae_b ANCESTRAL SPECIES 19 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Neognathae_c ANCESTRAL SPECIES 23 ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574.t ENSGT00940000156964.C Golden eagle MODERN SPECIES 21 SAP30BP (ENSACCG00020001354) RECQL5 (ENSACCG00020001399) ENSACCG00020001444 ENSACCG00020001485 LLGL2 (ENSACCG00020001535) TSEN54 (ENSACCG00020001570) ENSACCG00020001593 CASKIN2 (ENSACCG00020001614) TMEM94 (ENSACCG00020001672) GRB2 (ENSACCG00020001714) SLC25A19 (ENSACCG00020001738) MIF4GD (ENSACCG00020001751) MRPS7 (ENSACCG00020001861) GGA3 (ENSACCG00020001943) NUP85 (ENSACCG00020001997) SUMO2 (ENSACCG00020002046) ##22 JPT1 (ENSACCG00020002065) NT5C (ENSACCG00020002079) ENSACCG00020002098 SLC16A5 (ENSACCG00020002115) KCTD2 (ENSACCG00020002140) ATP5PD (ENSACCG00020002160) MRPL58 (ENSACCG00020002179) CDR2L (ENSACCG00020002197) HID1 (ENSACCG00020002225) OTOP3 (ENSACCG00020002279) OTOP2 (ENSACCG00020002321) USH1G (ENSACCG00020002333) FADS6 (ENSACCG00020002345) FDXR (ENSACCG00020002370) GRIN2C (ENSACCG00020002405) Kakapo MODERN SPECIES 8 PMP22 (ENSSHBG00005013122) TEKT3 (ENSSHBG00005013132) ENSSHBG00005013142 ENSSHBG00005013153 ENSSHBG00005013161 ENSSHBG00005013172 ENSSHBG00005013183 ENSSHBG00005013193 TMEM94 (ENSSHBG00005013253) GRB2 (ENSSHBG00005014063) SLC25A19 (ENSSHBG00005014072) MIF4GD (ENSSHBG00005014092) MRPS7 (ENSSHBG00005014098) GGA3 (ENSSHBG00005014106) NUP85 (ENSSHBG00005014168) SUMO2 (ENSSHBG00005014869) ##22 JPT1 (ENSSHBG00005014882) NT5C (ENSSHBG00005014889) ENSSHBG00005014895 SLC16A5 (ENSSHBG00005014910) KCTD2 (ENSSHBG00005015013) ATP5PD (ENSSHBG00005015022) ENSSHBG00005015033 CDR2L (ENSSHBG00005015041) HID1 (ENSSHBG00005015049) OTOP3 (ENSSHBG00005015062) OTOP2 (ENSSHBG00005015077) USH1G (ENSSHBG00005015081) FADS6 (ENSSHBG00005015087) ENSSHBG00005015092 GRIN2C (ENSSHBG00005015100) Amniota ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b ##22 Sauria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b ##22 Lepidosauria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b ##22 Episquamata ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b ##22 Laterata ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b ##22 Common wall lizard MODERN SPECIES 13 PCCB (ENSPMRG00000013315) SLC35G2 (ENSPMRG00000014309) ENSPMRG00000014314 ENSPMRG00000014318 VPS8 (ENSPMRG00000014329) C3orf70 (ENSPMRG00000014356) EHHADH (ENSPMRG00000014360) MAP3K13 (ENSPMRG00000014374) ENSPMRG00000014381 SENP2 (ENSPMRG00000014389) IGF2BP2 (ENSPMRG00000014408) TRA2B (ENSPMRG00000014430) ETV5 (ENSPMRG00000014439) #19 DGKG (ENSPMRG00000014452) #20 ENSPMRG00000014489 #21 ENSPMRG00000014496 ##22 UBE2G2 (ENSPMRG00000014504) #23 TSPEAR (ENSPMRG00000014513) #24 LRRC3 (ENSPMRG00000014517) TRPM2 (ENSPMRG00000014525) #25 CFAP410 (ENSPMRG00000014567) PFKL (ENSPMRG00000014580) ENSPMRG00000014594 DNAJB11 (ENSPMRG00000014599) TBCCD1 (ENSPMRG00000014607) CRYGS (ENSPMRG00000014618) SOX14 (ENSPMRG00000014636) ENSPMRG00000014644 CLDN18 (ENSPMRG00000014647) ENSPMRG00000014656 A4GNT (ENSPMRG00000014668) Mammalia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b ##22 Platypus MODERN SPECIES 45 ITGB4 (ENSOANG00000015842) SAP30BP (ENSOANG00000015843) ENSOANG00000045029 RECQL5 (ENSOANG00000015844) ENSOANG00000038802 LLGL2 (ENSOANG00000005718) TSEN54 (ENSOANG00000044411) ENSOANG00000008331 TMEM94 (ENSOANG00000008329) GRB2 (ENSOANG00000008328) SLC25A19 (ENSOANG00000008326) MIF4GD (ENSOANG00000008325) MRPS7 (ENSOANG00000008324) ENSOANG00000045951 NUP85 (ENSOANG00000008323) ENSOANG00000008322 ##22 JPT1 (ENSOANG00000047948) ARMC7 (ENSOANG00000049997) SLC16A5 (ENSOANG00000013057) ENSOANG00000007027 ENSOANG00000007029 ATP5PD (ENSOANG00000048532) MRPL58 (ENSOANG00000007032) CDR2L (ENSOANG00000004375) HID1 (ENSOANG00000004376) OTOP3 (ENSOANG00000049800) ENSOANG00000050330 USH1G (ENSOANG00000051114) FADS6 (ENSOANG00000012588) FDXR (ENSOANG00000012587) GRIN2C (ENSOANG00000042773) Theria DUPLICATION Theria DUPLICATION Theria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 Eutheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 Atlantogenata ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 Xenarthra ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 Armadillo MODERN SPECIES 452 ENSDNOG00000019439 SERPINI2 (ENSDNOG00000008864) WDR49 (ENSDNOG00000008877) PDCD10 (ENSDNOG00000042230) SERPINI1 (ENSDNOG00000015382) ENSDNOG00000043604 ##22 ENSDNOG00000033323 GOLIM4 (ENSDNOG00000038929) ENSDNOG00000048881 ENSDNOG00000044922 ENSDNOG00000032078 MECOM (ENSDNOG00000007746) ENSDNOG00000017489 ENSDNOG00000043319 ACTRT3 (ENSDNOG00000045149) MYNN (ENSDNOG00000004681) LRRC34 (ENSDNOG00000017242) LRRIQ4 (ENSDNOG00000015942) LRRC31 (ENSDNOG00000015945) SAMD7 (ENSDNOG00000006359) SEC62 (ENSDNOG00000014081) Afrotheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 Tenrec DUPLICATION Tenrec MODERN SPECIES 18113 ENSETEG00000014448 ##22 Tenrec MODERN SPECIES 10007 ENSETEG00000003339 ##22 Boreoeutheria ANCESTRAL SPECIES 4 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 Laurasiatheria ANCESTRAL SPECIES 4 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 Laurasiatheria_a ANCESTRAL SPECIES 4 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 Laurasiatheria_b ANCESTRAL SPECIES 90 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 Carnivora DUPLICATION Carnivora DUPLICATION Carnivora ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.a ##22 Caniformia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.a ##22 Caniformia_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.a ##22 Ursidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.a ##22 Ursus DUPLICATION Ursus ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.a.a ##22 American black bear MODERN SPECIES 38 ENSUAMG00000023393 ##22 ENSUAMG00000023398 KIF3B (ENSUAMG00000023409) POFUT1 (ENSUAMG00000023413) PLAGL2 (ENSUAMG00000023415) ENSUAMG00000023418 ENSUAMG00000023435 HCK (ENSUAMG00000023464) CCM2L (ENSUAMG00000023471) XKR7 (ENSUAMG00000023476) PDRG1 (ENSUAMG00000023478) TTLL9 (ENSUAMG00000023481) DUSP15 (ENSUAMG00000023483) ENSUAMG00000023485 FOXS1 (ENSUAMG00000023486) MYLK2 (ENSUAMG00000023487) Polar bear MODERN SPECIES 253 CDK5RAP1 (ENSUMAG00000024117) BPIFB1 (ENSUMAG00000024143) BPIFA1 (ENSUMAG00000024148) BPIFA3 (ENSUMAG00000024153) ENSUMAG00000024157 ENSUMAG00000024158 BPIFB4 (ENSUMAG00000024159) BPIFB6 (ENSUMAG00000024161) BPIFB2 (ENSUMAG00000024164) EFCAB8 (ENSUMAG00000024168) MAPRE1 (ENSUMAG00000024172) DNMT3B (ENSUMAG00000024174) COMMD7 (ENSUMAG00000024175) NOL4L (ENSUMAG00000024177) ASXL1 (ENSUMAG00000024178) ENSUMAG00000024179 ##22 KIF3B (ENSUMAG00000024181) POFUT1 (ENSUMAG00000024182) PLAGL2 (ENSUMAG00000000104) TM9SF4 (ENSUMAG00000000164) HCK (ENSUMAG00000000236) ENSUMAG00000000652 ENSUMAG00000000677 PDRG1 (ENSUMAG00000000709) TTLL9 (ENSUMAG00000000716) DUSP15 (ENSUMAG00000000753) FOXS1 (ENSUMAG00000000768) MYLK2 (ENSUMAG00000000784) TPX2 (ENSUMAG00000000846) BCL2L1 (ENSUMAG00000000854) COX4I2 (ENSUMAG00000000857) Ursus ANCESTRAL SPECIES 1 ENSGT00950000182986.a.a ENSGT00530000063877.a ENSGT00390000003339 ENSGT00940000166325 ENSGT00390000008616 ENSGT00530000064329 ENSGT00530000064502 ENSGT00390000000604 ENSGT00900000143580 ENSGT00390000001502 ENSGT00980000201228 ENSGT00940000166155 ENSGT00510000050451 ENSGT00390000000279 ENSGT00730000111628 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.a.b ##22 ENSGT00940000162385 ENSGT00530000064308 ENSGT00940000160613 ENSGT00940000156478 ENSGT00940000161109 ENSGT00390000002407.c ENSGT01090000260003.a.b.b.a.a.b.b.a ENSGT00390000009842 ENSGT00940000161489 ENSGT00940000162811 ENSGT00940000163813 ENSGT00940000162011 ENSGT00940000159879 ENSGT00390000013253 ENSGT01070000253766.B American black bear MODERN SPECIES 39 ENSUAMG00000023518 ENSUAMG00000023517 ENSUAMG00000023516 DEFB121 (ENSUAMG00000023515) ENSUAMG00000023514 ##22 ENSUAMG00000023513 DEFB124 (ENSUAMG00000023509) REM1 (ENSUAMG00000023507) HM13 (ENSUAMG00000023505) ID1 (ENSUAMG00000023504) Polar bear MODERN SPECIES 253 TBC1D20 (ENSUMAG00000001098) RBCK1 (ENSUMAG00000001072) ENSUMAG00000001060 NRSN2 (ENSUMAG00000001043) C20orf96 (ENSUMAG00000001036) ENSUMAG00000001020 DEFB129 (ENSUMAG00000001002) DEFB128 (ENSUMAG00000000991) DEFB127 (ENSUMAG00000000983) ENSUMAG00000000977 ENSUMAG00000000969 DEFB116 (ENSUMAG00000000958) ENSUMAG00000000951 DEFB119 (ENSUMAG00000000946) DEFB121 (ENSUMAG00000000932) ENSUMAG00000000926 ##22 ENSUMAG00000000919 DEFB124 (ENSUMAG00000000903) REM1 (ENSUMAG00000000895) HM13 (ENSUMAG00000000881) ENSUMAG00000000861 COX4I2 (ENSUMAG00000000857) BCL2L1 (ENSUMAG00000000854) TPX2 (ENSUMAG00000000846) MYLK2 (ENSUMAG00000000784) FOXS1 (ENSUMAG00000000768) DUSP15 (ENSUMAG00000000753) TTLL9 (ENSUMAG00000000716) PDRG1 (ENSUMAG00000000709) ENSUMAG00000000677 ENSUMAG00000000652 Mustelinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.a ##22 American mink MODERN SPECIES 17 ENSNVIG00000019360 ENSNVIG00000019348 ENSNVIG00000019343 DEFB115 (ENSNVIG00000019328) DEFB116 (ENSNVIG00000019317) ENSNVIG00000019311 DEFB119 (ENSNVIG00000019304) ENSNVIG00000019298 ##22 DEFB123 (ENSNVIG00000019294) DEFB124 (ENSNVIG00000019288) REM1 (ENSNVIG00000019277) HM13 (ENSNVIG00000019208) ID1 (ENSNVIG00000019195) COX42 (ENSNVIG00000019169) BCL2L1 (ENSNVIG00000019155) TPX2 (ENSNVIG00000019117) MYLK2 (ENSNVIG00000019082) FOXS1 (ENSNVIG00000019066) ENSNVIG00000019059 DUSP15 (ENSNVIG00000019046) TTLL9 (ENSNVIG00000018959) PDRG1 (ENSNVIG00000018937) XKR7 (ENSNVIG00000018930) Canidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.a ##22 Red fox MODERN SPECIES 129 ENSVVUG00000013755 FAT4 (ENSVVUG00000013738) ANKRD50 (ENSVVUG00000013724) ENSVVUG00000013718 ##22 SPRY1 (ENSVVUG00000013710) ENSVVUG00000013703 SPATA5 (ENSVVUG00000013672) NUDT6 (ENSVVUG00000013652) FGF2 (ENSVVUG00000013637) BBS12 (ENSVVUG00000013634) ENSVVUG00000013632 IL21 (ENSVVUG00000013615) IL2 (ENSVVUG00000013605) ADAD1 (ENSVVUG00000013576) ENSVVUG00000013492 ENSVVUG00000013429 ENSVVUG00000013376 TRPC3 (ENSVVUG00000013359) BBS7 (ENSVVUG00000013344) Felidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.a ##22 Panthera ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.a ##22 Tiger MODERN SPECIES 441 ENSPTIG00000020787 ENSPTIG00000020777 ##22 RADX (ENSPTIG00000020763) RNF128 (ENSPTIG00000020750) TBC1D8B (ENSPTIG00000020598) RIPPLY1 (ENSPTIG00000020587) CLDN2 (ENSPTIG00000008384) MORC4 (ENSPTIG00000020497) Panthera_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.a ##22 leopard MODERN SPECIES 74 ZBTB14 (ENSPPRG00000003993) AKAIN1 (ENSPPRG00000004032) DLGAP1 (ENSPPRG00000004760) TGIF1 (ENSPPRG00000005045) ENSPPRG00000005105 MYL12B (ENSPPRG00000005198) MYL12A (ENSPPRG00000005441) MYOM1 (ENSPPRG00000007760) LPIN2 (ENSPPRG00000008144) EMILIN2 (ENSPPRG00000008241) SMCHD1 (ENSPPRG00000009812) NDC80 (ENSPPRG00000010568) METTL4 (ENSPPRG00000010770) ENSPPRG00000010967 ENSPPRG00000012063 ENSPPRG00000012194 ##22 ADCYAP1 (ENSPPRG00000012367) YES1 (ENSPPRG00000012940) ENOSF1 (ENSPPRG00000013866) TYMS (ENSPPRG00000014417) CLUL1 (ENSPPRG00000017090) CETN1 (ENSPPRG00000021178) ENSPPRG00000017959 COLEC12 (ENSPPRG00000019249) THOC1 (ENSPPRG00000023794) USP14 (ENSPPRG00000023046) ENSPPRG00000021544 ROCK1 (ENSPPRG00000000252) ENSPPRG00000021681 GREB1L (ENSPPRG00000002166) ESCO1 (ENSPPRG00000002300) Cat MODERN SPECIES 1 HGF (ENSFCAG00000008554) CACNA2D1 (ENSFCAG00000029914) PCLO (ENSFCAG00000002901) SEMA3E (ENSFCAG00000031520) SEMA3A (ENSFCAG00000028062) SEMA3D (ENSFCAG00000024803) ENSFCAG00000035713 GRM3 (ENSFCAG00000024012) ELAPOR2 (ENSFCAG00000007415) DMTF1 (ENSFCAG00000013756) TMEM243 (ENSFCAG00000042545) CROT (ENSFCAG00000031699) ABCB1 (ENSFCAG00000027959) ENSFCAG00000051901 RUNDC3B (ENSFCAG00000028861) ENSFCAG00000033132 ##22 SLC25A40 (ENSFCAG00000015123) DBF4 (ENSFCAG00000031040) ADAM22 (ENSFCAG00000025413) SRI (ENSFCAG00000026291) STEAP4 (ENSFCAG00000024344) ZNF804B (ENSFCAG00000008141) TEX47 (ENSFCAG00000041090) ENSFCAG00000048779 ENSFCAG00000028721 STEAP2 (ENSFCAG00000018754) CFAP69 (ENSFCAG00000018697) FAM237B (ENSFCAG00000042902) GTPBP10 (ENSFCAG00000019336) ENSFCAG00000037995 CLDN12 (ENSFCAG00000026768) Carnivora ANCESTRAL SPECIES 5 ENSGT00940000163662 ENSGT00940000157456 ENSGT00940000157949 ENSGT00940000169973 ENSGT01030000235076 ENSGT00940000156247 ENSGT00940000159709 ENSGT00390000013778 ENSGT00940000153648.b ENSGT00940000153404.b ENSGT00940000160197 ENSGT00860000135660 ENSGT00940000157221 ENSGT00390000000214.a.b ENSGT00390000015965 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.b ##22 ENSGT00970000193677 ENSGT01100000263563.c.b ENSGT00390000005197.a ENSGT00390000002398 ENSGT00940000159983 ENSGT00950000183177.a.a.b ENSGT00390000004612 ENSGT00390000012556 ENSGT00390000010434.a ENSGT00390000007332 ENSGT00940000157294 ENSGT00390000015958 ENSGT00940000162224 ENSGT00940000155800 ENSGT00900000143693 Caniformia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.b ##22 Caniformia_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.b ##22 Ursidae ANCESTRAL SPECIES 29 ENSGT00940000162884 ENSGT00940000163662 ENSGT00940000157456 ENSGT00940000157949 ENSGT00940000156247 ENSGT00940000159709 ENSGT00390000013778 ENSGT00940000153648.b ENSGT00940000153404.b ENSGT00940000160197 ENSGT00860000135660 ENSGT00940000157221 ENSGT00390000000214.a.b ENSGT00970000193677 ENSGT00390000015965 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.b ##22 ENSGT01100000263563.c.b ENSGT00390000005197.a ENSGT00390000002398 ENSGT00940000159983 ENSGT00950000183177.a.a.b ENSGT00390000004612 ENSGT00390000012556 ENSGT00390000010434.a ENSGT00390000007332 ENSGT00940000157294 ENSGT00390000015958 ENSGT00940000162224 ENSGT00940000155800 ENSGT00950000183137.b.a ENSGT00940000160460 Giant Panda MODERN SPECIES 2 TLR6 (ENSAMEG00000018483) TLR1 (ENSAMEG00000018486) TLR10 (ENSAMEG00000018488) KLF3 (ENSAMEG00000010056) TBC1D1 (ENSAMEG00000011195) PGM2 (ENSAMEG00000011214) RELL1 (ENSAMEG00000011264) C4orf19 (ENSAMEG00000011277) NWD2 (ENSAMEG00000024908) DTHD1 (ENSAMEG00000005528) ARAP2 (ENSAMEG00000005492) ENSAMEG00000029477 PCDH7 (ENSAMEG00000026428) STIM2 (ENSAMEG00000014649) TBC1D19 (ENSAMEG00000014677) ENSAMEG00000023854 ##22 CAR1 (ENSAMEG00000031321) CCKAR (ENSAMEG00000014732) RBPJ (ENSAMEG00000018082) SMIM20 (ENSAMEG00000018092) SEL1L3 (ENSAMEG00000018094) SLC34A2 (ENSAMEG00000018105) ANAPC4 (ENSAMEG00000018114) ZCCHC4 (ENSAMEG00000027841) PI4K2B (ENSAMEG00000014735) SEPSECS (ENSAMEG00000014700) LGI2 (ENSAMEG00000008417) CCDC149 (ENSAMEG00000008440) SOD3 (ENSAMEG00000023550) DHX15 (ENSAMEG00000010482) PPARGC1A (ENSAMEG00000010421) Felidae ANCESTRAL SPECIES 4 ENSGT00940000157456 ENSGT00940000157949 ENSGT01030000235076 ENSGT00940000156247 ENSGT00940000159709 ENSGT00390000013778 ENSGT00940000153648.b ENSGT00940000153404.b ENSGT00940000160197 ENSGT00390000007888.c.b.a ENSGT00390000016760.c.b ENSGT00860000135660 ENSGT00940000157221 ENSGT00390000000214.a.b ENSGT00390000015965 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.b ##22 ENSGT00970000193677 ENSGT01100000263563.c.b ENSGT00390000005197.a ENSGT00390000002398 ENSGT00940000159983 ENSGT00950000183177.a.a.b ENSGT00390000004612 ENSGT00390000012556 ENSGT00390000010434.a ENSGT00390000007332 ENSGT00940000157294 ENSGT00390000015958 ENSGT00940000162224 ENSGT00940000155800 ENSGT00900000143693 Cat MODERN SPECIES 235 TBC1D1 (ENSFCAG00000052530) PGM2 (ENSFCAG00000004734) RELL1 (ENSFCAG00000000032) CB1H4orf19 (ENSFCAG00000000031) ENSFCAG00000050369 NWD2 (ENSFCAG00000031252) DTHD1 (ENSFCAG00000014534) ARAP2 (ENSFCAG00000004726) ENSFCAG00000033885 ENSFCAG00000048265 ENSFCAG00000052913 ENSFCAG00000032725 PCDH7 (ENSFCAG00000014975) STIM2 (ENSFCAG00000025940) TBC1D19 (ENSFCAG00000029340) ENSFCAG00000028607 ##22 CAR1 (ENSFCAG00000049200) CCKAR (ENSFCAG00000007718) RBPJ (ENSFCAG00000030363) SMIM20 (ENSFCAG00000046718) SEL1L3 (ENSFCAG00000013720) SLC34A2 (ENSFCAG00000029965) ANAPC4 (ENSFCAG00000042946) ZCCHC4 (ENSFCAG00000023396) PI4K2B (ENSFCAG00000025109) SEPSECS (ENSFCAG00000023094) LGI2 (ENSFCAG00000032361) CCDC149 (ENSFCAG00000015383) SOD3 (ENSFCAG00000045310) DHX15 (ENSFCAG00000009234) ENSFCAG00000040987 Panthera ANCESTRAL SPECIES 5 ENSGT00940000157456 ENSGT00940000157949 ENSGT01030000235076 ENSGT00940000156247 ENSGT00940000159709 ENSGT00390000013778 ENSGT00940000153648.b ENSGT00940000153404.b ENSGT00940000160197 ENSGT00390000007888.c.b.a ENSGT00390000016760.c.b ENSGT00860000135660 ENSGT00940000157221 ENSGT00390000000214.a.b ENSGT00390000015965 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.b ##22 ENSGT00970000193677 ENSGT01100000263563.c.b ENSGT00390000005197.a ENSGT00390000002398 ENSGT00940000159983 ENSGT00950000183177.a.a.b ENSGT00390000004612 ENSGT00390000012556 ENSGT00390000010434.a ENSGT00390000007332 ENSGT00940000157294 ENSGT00390000015958 ENSGT00940000162224 ENSGT00940000155800 ENSGT00900000143693 Tiger MODERN SPECIES 349 STIM2 (ENSPTIG00000001265) TBC1D19 (ENSPTIG00000002885) ENSPTIG00000005280 ##22 CCKAR (ENSPTIG00000005490) RBPJ (ENSPTIG00000006126) ENSPTIG00000007083 SEL1L3 (ENSPTIG00000007261) SLC34A2 (ENSPTIG00000008160) ANAPC4 (ENSPTIG00000008519) ZCCHC4 (ENSPTIG00000008749) PI4K2B (ENSPTIG00000008971) SEPSECS (ENSPTIG00000009229) LGI2 (ENSPTIG00000009350) CCDC149 (ENSPTIG00000009661) DHX15 (ENSPTIG00000010037) Panthera_a ANCESTRAL SPECIES 2 ENSGT00940000157456 ENSGT00940000157949 ENSGT01030000235076 ENSGT00940000156247 ENSGT00940000159709 ENSGT00390000013778 ENSGT00940000153648.b ENSGT00940000153404.b ENSGT00940000160197 ENSGT00390000007888.c.b.a ENSGT00390000016760.c.b ENSGT00860000135660 ENSGT00940000157221 ENSGT00390000000214.a.b ENSGT00390000015965 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.b ##22 ENSGT00970000193677 ENSGT01100000263563.c.b ENSGT00390000005197.a ENSGT00390000002398 ENSGT00940000159983 ENSGT00950000183177.a.a.b ENSGT00390000004612 ENSGT00390000012556 ENSGT00390000010434.a ENSGT00390000007332 ENSGT00940000157294 ENSGT00390000015958 ENSGT00940000162224 ENSGT00940000155800 ENSGT00900000143693 lion MODERN SPECIES 4 ENSPLOG00000010896 SULT1E1 (ENSPLOG00000010948) CSN1S1 (ENSPLOG00000011114) CSN2 (ENSPLOG00000011567) ENSPLOG00000011702 DTHD1 (ENSPLOG00000011795) ARAP2 (ENSPLOG00000012184) ENSPLOG00000012384 ENSPLOG00000012421 ENSPLOG00000012458 ENSPLOG00000012476 ENSPLOG00000012507 PCDH7 (ENSPLOG00000012591) STIM2 (ENSPLOG00000012668) TBC1D19 (ENSPLOG00000012764) ENSPLOG00000012957 ##22 ENSPLOG00000013017 CCKAR (ENSPLOG00000013057) RBPJ (ENSPLOG00000013224) ENSPLOG00000013526 SEL1L3 (ENSPLOG00000013599) SLC34A2 (ENSPLOG00000013975) ANAPC4 (ENSPLOG00000014198) ZCCHC4 (ENSPLOG00000014263) PI4K2B (ENSPLOG00000014324) SEPSECS (ENSPLOG00000014441) LGI2 (ENSPLOG00000014551) CCDC149 (ENSPLOG00000014724) SOD3 (ENSPLOG00000015212) DHX15 (ENSPLOG00000015238) ENSPLOG00000015280 leopard MODERN SPECIES 25 ENSPPRG00000021125 PCDH7 (ENSPPRG00000001154) STIM2 (ENSPPRG00000000768) TBC1D19 (ENSPPRG00000023259) ENSPPRG00000023897 ##22 CCKAR (ENSPPRG00000024018) RBPJ (ENSPPRG00000024386) SMIM20 (ENSPPRG00000018812) SEL1L3 (ENSPPRG00000018369) ENSPPRG00000009004 SLC34A2 (ENSPPRG00000008628) ANAPC4 (ENSPPRG00000006664) ZCCHC4 (ENSPPRG00000006329) PI4K2B (ENSPPRG00000006151) SEPSECS (ENSPPRG00000005618) LGI2 (ENSPPRG00000005473) CCDC149 (ENSPPRG00000005074) SOD3 (ENSPPRG00000020880) DHX15 (ENSPPRG00000002164) ENSPPRG00000020851 Carnivora ANCESTRAL SPECIES 9 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.d ##22 ENSGT00940000164037 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.r ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b Caniformia ANCESTRAL SPECIES 116 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.d ##22 ENSGT00940000164037 Canidae ANCESTRAL SPECIES 142 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.d ##22 ENSGT00940000164037 Canis_lupus ANCESTRAL SPECIES 34 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00390000008902.i.a.a.b ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.d ##22 ENSGT00940000164037 ENSGT00950000182895.a.a.a.b.e.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.q.a.b.a.a.b.a ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b Dog DUPLICATION Dog MODERN SPECIES 37 GALK1 (ENSCAFG00845023788) ITGB4 (ENSCAFG00845024014) SAP30BP (ENSCAFG00845024576) RECQL5 (ENSCAFG00845024780) ENSCAFG00845025141 TMEM94 (ENSCAFG00845025478) LLGL2 (ENSCAFG00845026442) TSEN54 (ENSCAFG00845026641) CASKIN2 (ENSCAFG00845026763) GRB2 (ENSCAFG00845026938) SLC25A19 (ENSCAFG00845027026) MIF4GD (ENSCAFG00845027091) MRPS7 (ENSCAFG00845027208) GGA3 (ENSCAFG00845027326) NUP85 (ENSCAFG00845027481) SUMO2 (ENSCAFG00845027610) ##22 JPT1 (ENSCAFG00845027647) NT5C (ENSCAFG00845027674) ARMC7 (ENSCAFG00845027729) SLC16A5 (ENSCAFG00845027792) ENSCAFG00845027850 KCTD2 (ENSCAFG00845015878) ENSCAFG00845015965 MRPL58 (ENSCAFG00845016002) CDR2L (ENSCAFG00845016040) HID1 (ENSCAFG00845016103) OTOP3 (ENSCAFG00845016289) OTOP2 (ENSCAFG00845016358) USH1G (ENSCAFG00845016408) FADS6 (ENSCAFG00845016573) FDXR (ENSCAFG00845016734) Dog MODERN SPECIES 35 TATDN3 (ENSCAFG00845003857) ENSCAFG00845001121 FLVCR1 (ENSCAFG00845001151) ENSCAFG00845001182 VASH2 (ENSCAFG00845001231) ANGEL2 (ENSCAFG00845001293) RPS6KC1 (ENSCAFG00845001399) PROX1 (ENSCAFG00845001606) SMYD2 (ENSCAFG00845001630) ENSCAFG00845001638 PTPN14 (ENSCAFG00845001665) CENPF (ENSCAFG00845001752) ENSCAFG00845001892 ENSCAFG00845001932 ENSCAFG00845001949 ENSCAFG00845001973 ##22 ENSCAFG00845001988 ##22 ENSCAFG00845002008 TOR1AIP1 (ENSCAFG00845002082) CEP350 (ENSCAFG00845002165) ENSCAFG00845002252 QSOX1 (ENSCAFG00845002288) LHX4 (ENSCAFG00845002410) ACBD6 (ENSCAFG00845002431) ENSCAFG00845002447 XPR1 (ENSCAFG00845002485) KIAA1614 (ENSCAFG00845002551) STX6 (ENSCAFG00845002602) ENSCAFG00845002628 CACNA1E (ENSCAFG00845003292) ZNF648 (ENSCAFG00845003989) Felidae ANCESTRAL SPECIES 8 ENSGT00940000157800 ENSGT00940000165228 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.d ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.r ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Panthera ANCESTRAL SPECIES 22 ENSGT00940000157800 ENSGT00940000165228 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.d ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.r ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Panthera_a ANCESTRAL SPECIES 25 ENSGT00390000007870 ENSGT00940000157800 ENSGT00940000165228 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.d ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.r ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 leopard MODERN SPECIES 48 RECQL5 (ENSPPRG00000004541) ENSPPRG00000003260 SMIM6 (ENSPPRG00000016437) SMIM5 (ENSPPRG00000001878) ENSPPRG00000001524 LLGL2 (ENSPPRG00000011496) TSEN54 (ENSPPRG00000009162) CASKIN2 (ENSPPRG00000008893) TMEM94 (ENSPPRG00000007619) GRB2 (ENSPPRG00000004519) SLC25A19 (ENSPPRG00000003012) MIF4GD (ENSPPRG00000001215) ENSPPRG00000000887 GGA3 (ENSPPRG00000022738) NUP85 (ENSPPRG00000021452) ENSPPRG00000014496 ##22 JPT1 (ENSPPRG00000013327) NT5C (ENSPPRG00000012883) ARMC7 (ENSPPRG00000012248) SLC16A5 (ENSPPRG00000011645) ENSPPRG00000010089 KCTD2 (ENSPPRG00000009025) ENSPPRG00000008825 MRPL58 (ENSPPRG00000008418) CDR2L (ENSPPRG00000008334) HID1 (ENSPPRG00000007778) OTOP3 (ENSPPRG00000007252) OTOP2 (ENSPPRG00000006894) USH1G (ENSPPRG00000006502) FADS6 (ENSPPRG00000006356) FDXR (ENSPPRG00000005872) lion MODERN SPECIES 14 SAP30BP (ENSPLOG00000011693) RECQL5 (ENSPLOG00000011958) SMIM6 (ENSPLOG00000012155) SMIM5 (ENSPLOG00000012170) ENSPLOG00000012316 LLGL2 (ENSPLOG00000013411) TSEN54 (ENSPLOG00000013461) CASKIN2 (ENSPLOG00000013587) TMEM94 (ENSPLOG00000014091) GRB2 (ENSPLOG00000014679) SLC25A19 (ENSPLOG00000014750) MIF4GD (ENSPLOG00000014790) MRPS7 (ENSPLOG00000014877) GGA3 (ENSPLOG00000015013) NUP85 (ENSPLOG00000015286) ENSPLOG00000015388 ##22 JPT1 (ENSPLOG00000015457) NT5C (ENSPLOG00000015525) ARMC7 (ENSPLOG00000015589) SLC16A5 (ENSPLOG00000015688) ENSPLOG00000015711 KCTD2 (ENSPLOG00000015771) ATP5PD (ENSPLOG00000015809) MRPL58 (ENSPLOG00000015856) CDR2L (ENSPLOG00000015893) HID1 (ENSPLOG00000015951) OTOP3 (ENSPLOG00000016113) OTOP2 (ENSPLOG00000016193) USH1G (ENSPLOG00000016294) FADS6 (ENSPLOG00000016336) FDXR (ENSPLOG00000016486) Artiodactyla ANCESTRAL SPECIES 4 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT01070000255137 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Suina ANCESTRAL SPECIES ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT01070000255137 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.g ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b Chacoan peccary MODERN SPECIES 818 TMEM94 (ENSCWAG00000015340) GRB2 (ENSCWAG00000018528) SLC25A19 (ENSCWAG00000018601) MIF4GD (ENSCWAG00000018634) MRPS7 (ENSCWAG00000018675) GGA3 (ENSCWAG00000018725) NUP85 (ENSCWAG00000018811) ENSCWAG00000018958 ##22 JPT1 (ENSCWAG00000019005) NT5C (ENSCWAG00000019038) ARMC7 (ENSCWAG00000019072) SLC16A5 (ENSCWAG00000019117) ENSCWAG00000019154 KCTD2 (ENSCWAG00000019194) ATP5PD (ENSCWAG00000019219) MRPL58 (ENSCWAG00000019238) CDR2L (ENSCWAG00000019250) HID1 (ENSCWAG00000019279) OTOP3 (ENSCWAG00000019352) OTOP2 (ENSCWAG00000019447) USH1G (ENSCWAG00000019508) FADS6 (ENSCWAG00000019526) ENSCWAG00000019560 Artiodactyla_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 Artiodactyla_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 Pecora ANCESTRAL SPECIES 141 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 Yarkand deer DUPLICATION Yarkand deer MODERN SPECIES 28 SAP30BP (ENSCHYG00000000899) RECQL5 (ENSCHYG00000000984) SMIM5 (ENSCHYG00000001117) ENSCHYG00000001173 LLGL2 (ENSCHYG00000001311) TSEN54 (ENSCHYG00000001411) CASKIN2 (ENSCHYG00000001493) TMEM94 (ENSCHYG00000001778) GRB2 (ENSCHYG00000002255) SLC25A19 (ENSCHYG00000002296) MIF4GD (ENSCHYG00000002361) MRPS7 (ENSCHYG00000002429) GGA3 (ENSCHYG00000002497) NUP85 (ENSCHYG00000002671) ENSCHYG00000002708 ENSCHYG00000002733 ##22 ENSCHYG00000002774 ENSCHYG00000002843 ENSCHYG00000002868 SLC16A5 (ENSCHYG00000002899) ENSCHYG00000002928 ENSCHYG00000002952 ENSCHYG00000002965 MRPL58 (ENSCHYG00000002970) CDR2L (ENSCHYG00000002992) HID1 (ENSCHYG00000003028) OTOP3 (ENSCHYG00000003091) OTOP2 (ENSCHYG00000003102) USH1G (ENSCHYG00000003115) FADS6 (ENSCHYG00000003135) FDXR (ENSCHYG00000003189) Yarkand deer MODERN SPECIES 21 AK3 (ENSCHYG00000026564) CDC37L1 (ENSCHYG00000026576) SPATA6L (ENSCHYG00000026599) PLPP6 (ENSCHYG00000026621) SLC1A1 (ENSCHYG00000026638) GLIS3 (ENSCHYG00000026667) RFX3 (ENSCHYG00000026695) PUM3 (ENSCHYG00000026723) KCNV2 (ENSCHYG00000026745) VLDLR (ENSCHYG00000026763) ENSCHYG00000026782 SMARCA2 (ENSCHYG00000026820) DMRT2 (ENSCHYG00000026873) DMRT3 (ENSCHYG00000026880) DMRT1 (ENSCHYG00000014189) ENSCHYG00000014288 ##22 KANK1 (ENSCHYG00000014368) DOCK8 (ENSCHYG00000014734) ENSCHYG00000015376 ENSCHYG00000016258 PGM5 (ENSCHYG00000016305) ENSCHYG00000016626 TMEM252 (ENSCHYG00000016651) PABIR1 (ENSCHYG00000016706) PIP5K1B (ENSCHYG00000016753) ENSCHYG00000016971 FXN (ENSCHYG00000017028) TJP2 (ENSCHYG00000017274) ENTREP1 (ENSCHYG00000019624) APBA1 (ENSCHYG00000019877) PTAR1 (ENSCHYG00000020094) Percora_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 Bovidae ANCESTRAL SPECIES 2 ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.p ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Caprinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 Rambouillet Sheep MODERN SPECIES 2 ITGB4 (ENSOARG00020009797) SAP30BP (ENSOARG00020009689) SMIM5 (ENSOARG00020009636) RECQL5 (ENSOARG00020009478) ENSOARG00020007814 LLGL2 (ENSOARG00020007369) TSEN54 (ENSOARG00020007255) CASKIN2 (ENSOARG00020007127) TMEM94 (ENSOARG00020006269) GRB2 (ENSOARG00020006190) SLC25A19 (ENSOARG00020006160) MIF4GD (ENSOARG00020006079) MRPS7 (ENSOARG00020006002) GGA3 (ENSOARG00020005717) NUP85 (ENSOARG00020005621) ENSOARG00020005570 ##22 JPT1 (ENSOARG00020005519) NT5C (ENSOARG00020005491) ARMC7 (ENSOARG00020005463) SLC16A5 (ENSOARG00020005444) ENSOARG00020005411 KCTD2 (ENSOARG00020005376) ATP5PD (ENSOARG00020005322) MRPL58 (ENSOARG00020005301) CDR2L (ENSOARG00020005276) HID1 (ENSOARG00020005199) OTOP3 (ENSOARG00020005119) USH1G (ENSOARG00020005099) FADS6 (ENSOARG00020005088) FDXR (ENSOARG00020003916) GRIN2C (ENSOARG00020003755) Bovinae ANCESTRAL SPECIES ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b.i.a #22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00390000003582.p ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 ENSGT00940000156964.C American bison MODERN SPECIES 2284 ENSBBBG00000003873 ##22 ENSBBBG00000015561 Bos ANCESTRAL SPECIES 1 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00390000003582.p ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00390000004856.w.a.a.b.a ENSGT00950000182990.b ENSGT00390000013574 Bos_b ANCESTRAL SPECIES 21 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000164037 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 Hybrid Bos Indicus MODERN SPECIES 10 CASKIN2 (ENSBIXG00005030216) SAP30BP (ENSBIXG00005030247) RECQL5 (ENSBIXG00005030270) SMIM5 (ENSBIXG00005030288) LLGL2 (ENSBIXG00005030411) TSEN54 (ENSBIXG00005030427) TMEM94 (ENSBIXG00005030466) GRB2 (ENSBIXG00005030500) ENSBIXG00005030511 SLC25A19 (ENSBIXG00005030519) MIF4GD (ENSBIXG00005030536) MRPS7 (ENSBIXG00005030545) GGA3 (ENSBIXG00005030554) NUP85 (ENSBIXG00005030574) ENSBIXG00005030587 ENSBIXG00005030597 ##22 JPT1 (ENSBIXG00005030607) NT5C (ENSBIXG00005030622) ARMC7 (ENSBIXG00005030629) SLC16A5 (ENSBIXG00005030637) ENSBIXG00005030646 ENSBIXG00005030652 ATP5PD (ENSBIXG00005030661) MRPL58 (ENSBIXG00005030672) CDR2L (ENSBIXG00005030682) HID1 (ENSBIXG00005030692) OTOP3 (ENSBIXG00005030707) OTOP2 (ENSBIXG00005030710) USH1G (ENSBIXG00005030717) ENSBIXG00005030721 FADS6 (ENSBIXG00005030725) Bos_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 Wild yak MODERN SPECIES 857 ENSBMUG00000023167 ##22 ATP11C (ENSBMUG00000023327) MCF2 (ENSBMUG00000023450) F9 (ENSBMUG00000023498) ENSBMUG00000023528 ENSBMUG00000023554 ENSBMUG00000023564 ENSBMUG00000023576 Euarchontoglires ANCESTRAL SPECIES 4 ENSGT00940000165228 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 Primates ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 Haplorrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 Tarsier MODERN SPECIES 1436 ENSTSYG00000027459 ##22 Simiiformes ANCESTRAL SPECIES 7 ENSGT00940000165228 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00940000164172 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582.e.c ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Catarrhini ANCESTRAL SPECIES 14 ENSGT00940000157870 ENSGT00530000063548.A ENSGT00390000012635.a.a ENSGT00390000010355.q.a ENSGT00940000161751 ENSGT00940000161759 ENSGT00530000064263 ENSGT01030000234601.c.b.a ENSGT00390000013620 ENSGT00940000153372.A.e.a.a ENSGT00940000162425 ENSGT00390000007731 ENSGT00940000154632.q.b.b ENSGT00390000013339 ENSGT00940000157778 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00950000183003.a.a.a.a.a ENSGT00940000154259.l.c.b ENSGT00940000160196 ENSGT00940000154827 ENSGT00940000156423 ENSGT00530000064292 ENSGT00940000157298 ENSGT00940000162168 ENSGT00940000162130 ENSGT00940000159174 ENSGT00940000157548 ENSGT00940000155291 ENSGT00940000163834 ENSGT01000000214434.B.b.e.b ENSGT00940000156320 Cercopithecidae ANCESTRAL SPECIES 10 ENSGT00940000157870 ENSGT00530000063548.A ENSGT00390000012635.a.a ENSGT00390000010355.q.a.c ENSGT00940000161751 ENSGT00940000161759 ENSGT00530000064263 ENSGT01030000234601.c.b.a ENSGT00390000013620 ENSGT00940000153372.A.e.a.a ENSGT00940000162425 ENSGT00390000007731 ENSGT00940000154632.q.b.b ENSGT00390000013339 ENSGT00940000157778 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00950000183003.a.a.a.a.a ENSGT00940000154259.l.c.b ENSGT00940000160196 ENSGT00940000154827 ENSGT00940000156423 ENSGT00530000064292 ENSGT00940000157298 ENSGT00940000162168 ENSGT00940000162130 ENSGT00940000159174 ENSGT00940000157548 ENSGT00940000155291 ENSGT00940000163834 ENSGT01000000214434.B.b.e.b ENSGT00940000156320 Cercopithecinae ANCESTRAL SPECIES 14 ENSGT00940000157870 ENSGT00530000063548.A ENSGT00390000012635.a.a ENSGT00390000010355.q.a.c ENSGT00940000161751 ENSGT00940000161759 ENSGT00530000064263 ENSGT01030000234601.c.b.a ENSGT00390000013620 ENSGT00940000153372.A.e.a.a ENSGT00940000162425 ENSGT00390000007731 ENSGT00940000154632.q.b.b ENSGT00390000013339 ENSGT00940000157778 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00950000183003.a.a.a.a.a ENSGT00940000154259.l.c.b ENSGT00940000160196 ENSGT00940000154827 ENSGT00940000156423 ENSGT00530000064292 ENSGT00940000157298 ENSGT00940000162168 ENSGT00940000162130 ENSGT00940000159174 ENSGT00940000157548 ENSGT00940000155291 ENSGT00940000163834 ENSGT01000000214434.B.b.e.b ENSGT00940000156320 Cercopithecinae_a ANCESTRAL SPECIES 13 ENSGT00940000157870 ENSGT00530000063548.A ENSGT00390000012635.a.a ENSGT00390000010355.q.a.c ENSGT00940000161751 ENSGT00940000161759 ENSGT00530000064263 ENSGT01030000234601.c.b.a ENSGT00390000013620 ENSGT00940000153372.A.e.a.a ENSGT00940000162425 ENSGT00390000007731 ENSGT00940000154632.q.b.b ENSGT00390000013339 ENSGT00940000157778 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00950000183003.a.a.a.a.a ENSGT00940000154259.l.c.b ENSGT00940000160196 ENSGT00940000154827 ENSGT00940000156423 ENSGT00530000064292 ENSGT00940000157298 ENSGT00940000162168 ENSGT00940000162130 ENSGT00940000159174 ENSGT00940000157548 ENSGT00940000155291 ENSGT00940000163834 ENSGT01000000214434.B.b.e.b ENSGT00940000156320 Cercopithecinae_b ANCESTRAL SPECIES 6 ENSGT00940000157870 ENSGT00530000063548.A ENSGT00390000012635.a.a ENSGT00390000010355.q.a.c ENSGT00940000161751 ENSGT00940000161759 ENSGT00530000064263 ENSGT01030000234601.c.b.a ENSGT00390000013620 ENSGT00940000153372.A.e.a.a ENSGT00940000162425 ENSGT00390000007731 ENSGT00940000154632.q.b.b ENSGT00390000013339 ENSGT00940000157778 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00950000183003.a.a.a.a.a ENSGT00940000154259.l.c.b ENSGT00940000160196 ENSGT00940000154827 ENSGT00940000156423 ENSGT00530000064292 ENSGT00940000157298 ENSGT00940000162168 ENSGT00940000162130 ENSGT00940000159174 ENSGT00940000157548 ENSGT00940000155291 ENSGT00940000163834 ENSGT01000000214434.B.b.e.b ENSGT00940000156320 Cercopithecinae_d ANCESTRAL SPECIES 38 ENSGT00940000157870 ENSGT00530000063548.A ENSGT00390000012635.a.a ENSGT00390000010355.q.a.c ENSGT00940000161751 ENSGT00940000161759 ENSGT00530000064263 ENSGT01030000234601.c.b.a ENSGT00390000013620 ENSGT00940000153372.A.e.a.a ENSGT00940000162425 ENSGT00390000007731 ENSGT00940000154632.q.b.b ENSGT00390000013339 ENSGT00940000157778 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00950000183003.a.a.a.a.a ENSGT00940000154259.l.c.b ENSGT00940000160196 ENSGT00940000154827 ENSGT00940000156423 ENSGT00530000064292 ENSGT00940000157298 ENSGT00940000162168 ENSGT00940000162130 ENSGT00940000159174 ENSGT00940000157548 ENSGT00940000155291 ENSGT01000000214434.B.b.e.b ENSGT00940000156320 ENSGT01050000244891.A.j.b Drill MODERN SPECIES 1484 PPEF2 (ENSMLEG00000039448) NAAA (ENSMLEG00000041532) SDAD1 (ENSMLEG00000003306) ENSMLEG00000041829 CXCL9 (ENSMLEG00000034876) CXCL10 (ENSMLEG00000039958) CXCL11 (ENSMLEG00000043244) ART3 (ENSMLEG00000041797) NUP54 (ENSMLEG00000041798) SCARB2 (ENSMLEG00000038762) FAM47E (ENSMLEG00000037896) STBD1 (ENSMLEG00000034138) CCDC158 (ENSMLEG00000029903) ENSMLEG00000031918 SHROOM3 (ENSMLEG00000043380) ENSMLEG00000003215 ##22 SOWAHB (ENSMLEG00000027713) SEPTIN11 (ENSMLEG00000041438) ENSMLEG00000040458 CCNI (ENSMLEG00000035678) ENSMLEG00000013658 CCNG2 (ENSMLEG00000034874) CXCL13 (ENSMLEG00000042962) CNOT6L (ENSMLEG00000029198) MRPL1 (ENSMLEG00000030203) FRAS1 (ENSMLEG00000043062) ANXA3 (ENSMLEG00000042748) BMP2K (ENSMLEG00000034112) PAQR3 (ENSMLEG00000029581) ENSMLEG00000036976 GK2 (ENSMLEG00000019097) Sooty mangabey MODERN SPECIES 507 G3BP2 (ENSCATG00000025521) USO1 (ENSCATG00000034624) PPEF2 (ENSCATG00000038360) NAAA (ENSCATG00000034147) ENSCATG00000029565 ENSCATG00000029455 CXCL9 (ENSCATG00000038840) CXCL10 (ENSCATG00000035830) CXCL11 (ENSCATG00000034207) ART3 (ENSCATG00000045227) NUP54 (ENSCATG00000040936) SCARB2 (ENSCATG00000030974) FAM47E (ENSCATG00000042206) STBD1 (ENSCATG00000042702) CCDC158 (ENSCATG00000044186) ENSCATG00000029651 ##22 SHROOM3 (ENSCATG00000036610) SOWAHB (ENSCATG00000013510) ENSCATG00000011822 SEPTIN11 (ENSCATG00000027299) CCNI (ENSCATG00000039303) CCNG2 (ENSCATG00000031723) CXCL13 (ENSCATG00000041898) CNOT6L (ENSCATG00000029623) ENSCATG00000023355 FRAS1 (ENSCATG00000040368) ANXA3 (ENSCATG00000043647) BMP2K (ENSCATG00000034365) PAQR3 (ENSCATG00000041783) ENSCATG00000034500 GK2 (ENSCATG00000018607) Rhinopithecus ANCESTRAL SPECIES 44 ENSGT00940000157870 ENSGT00530000063548.A ENSGT00390000012635.a.a ENSGT00390000010355.q.a.c ENSGT00940000161751 ENSGT00940000161759 ENSGT00950000183198.c.a.b.b ENSGT00530000064263 ENSGT01030000234601.c.b.a ENSGT00390000013620 ENSGT00940000153372.A.e.a.a ENSGT00940000162425 ENSGT00390000007731 ENSGT00940000154632.q.b.b ENSGT00390000013339 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000157778 ENSGT00940000154259.l.c.b ENSGT00940000160196 ENSGT00940000154827 ENSGT00940000156423 ENSGT00530000064292 ENSGT00940000157298 ENSGT00940000162168 ENSGT00940000162130 ENSGT00940000159174 ENSGT00940000157548 ENSGT00940000155291 Black snub-nosed monkey MODERN SPECIES 547 PPEF2 (ENSRBIG00000044697) NAAA (ENSRBIG00000044696) ENSRBIG00000037088 ENSRBIG00000009408 CXCL9 (ENSRBIG00000028581) ENSRBIG00000036558 ENSRBIG00000016052 CXCL11 (ENSRBIG00000034782) ART3 (ENSRBIG00000031515) NUP54 (ENSRBIG00000010947) SCARB2 (ENSRBIG00000028203) FAM47E (ENSRBIG00000038417) STBD1 (ENSRBIG00000041441) ENSRBIG00000040524 CCDC158 (ENSRBIG00000044923) ENSRBIG00000032978 ##22 SHROOM3 (ENSRBIG00000030001) ENSRBIG00000040031 SEPTIN11 (ENSRBIG00000024343) CCNI (ENSRBIG00000043408) ENSRBIG00000040037 CCNG2 (ENSRBIG00000030318) CXCL13 (ENSRBIG00000034644) CNOT6L (ENSRBIG00000027644) MRPL1 (ENSRBIG00000040801) FRAS1 (ENSRBIG00000027344) ANXA3 (ENSRBIG00000012224) BMP2K (ENSRBIG00000043864) PAQR3 (ENSRBIG00000044432) ENSRBIG00000002758 NAA11 (ENSRBIG00000026628) Hominoidea ANCESTRAL SPECIES 10 ENSGT00940000157870 ENSGT00530000063548.A ENSGT00390000012635.a.a ENSGT00390000010355.q.a.a ENSGT00940000161751 ENSGT00940000161759 ENSGT00530000064263 ENSGT01030000234601.c.b.a ENSGT00390000013620 ENSGT00940000153372.A.e.a.a ENSGT00940000162425 ENSGT00390000007731 ENSGT00940000154632.q.b.b ENSGT00390000013339 ENSGT00940000157778 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 ENSGT00950000183003.a.a.a.a.a ENSGT00940000154259.l.c.b ENSGT00940000160196 ENSGT00940000154827 ENSGT00940000156423 ENSGT00530000064292 ENSGT00940000157298 ENSGT00940000162168 ENSGT00940000162130 ENSGT00940000159174 ENSGT00940000157548 ENSGT00940000155291 ENSGT00940000163834 ENSGT01000000214434.B.b.e.b Gibbon MODERN SPECIES 24 PPEF2 (ENSNLEG00000008021) NAAA (ENSNLEG00000008032) ENSNLEG00000008036 ENSNLEG00000027034 CXCL11 (ENSNLEG00000008037) ART3 (ENSNLEG00000008044) CXCL9 (ENSNLEG00000008060) CXCL10 (ENSNLEG00000008066) NUP54 (ENSNLEG00000008073) SCARB2 (ENSNLEG00000008090) FAM47E (ENSNLEG00000008096) STBD1 (ENSNLEG00000008103) CCDC158 (ENSNLEG00000008104) ENSNLEG00000031212 SHROOM3 (ENSNLEG00000008134) ENSNLEG00000028042 ##22 SOWAHB (ENSNLEG00000008144) SEPTIN11 (ENSNLEG00000032040) ENSNLEG00000035237 CCNI (ENSNLEG00000027989) ENSNLEG00000008165 CCNG2 (ENSNLEG00000008169) CXCL13 (ENSNLEG00000008184) CNOT6L (ENSNLEG00000028820) ENSNLEG00000008205 FRAS1 (ENSNLEG00000008239) ANXA3 (ENSNLEG00000008349) BMP2K (ENSNLEG00000008399) PAQR3 (ENSNLEG00000008420) ENSNLEG00000008443 ANTXR2 (ENSNLEG00000008447) Hominidae ANCESTRAL SPECIES 16 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000161656.r ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00910000147493 ENSGT00940000158336 ENSGT00390000003582.e.c.a ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Orangutan MODERN SPECIES 8 SAP30BP (ENSPPYG00000008633) SMIM5 (ENSPPYG00000037700) RECQL5 (ENSPPYG00000008632) ENSPPYG00000008631 LLGL2 (ENSPPYG00000008630) TSEN54 (ENSPPYG00000008629) CASKIN2 (ENSPPYG00000035280) TMEM94 (ENSPPYG00000008628) ENSPPYG00000008627 GRB2 (ENSPPYG00000008626) SLC25A19 (ENSPPYG00000008625) ENSPPYG00000008624 ENSPPYG00000008623 GGA3 (ENSPPYG00000008622) NUP85 (ENSPPYG00000008621) ENSPPYG00000029777 ##22 ENSPPYG00000036765 NT5C (ENSPPYG00000008619) SLC16A5 (ENSPPYG00000008617) ATP5PD (ENSPPYG00000008615) ENSPPYG00000041714 MRPL58 (ENSPPYG00000035745) CDR2L (ENSPPYG00000040162) HID1 (ENSPPYG00000008612) OTOP3 (ENSPPYG00000008611) OTOP2 (ENSPPYG00000008610) USH1G (ENSPPYG00000008609) FADS6 (ENSPPYG00000008608) FDXR (ENSPPYG00000008607) ENSPPYG00000008606 TMEM104 (ENSPPYG00000008605) Homo/Pan/Gorilla group ANCESTRAL SPECIES 119 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 Homo/Pan group ANCESTRAL SPECIES 125 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 Pan ANCESTRAL SPECIES 3 ENSGT00940000165228 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000161656.r ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00910000147493 ENSGT00940000158336 ENSGT00390000003582.e.c.a ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Chimpanzee MODERN SPECIES 8 SMIM6 (ENSPTRG00000043001) SMIM5 (ENSPTRG00000049227) RECQL5 (ENSPTRG00000009651) MYO15B (ENSPTRG00000049499) LLGL2 (ENSPTRG00000009647) TSEN54 (ENSPTRG00000009646) CASKIN2 (ENSPTRG00000009645) TMEM94 (ENSPTRG00000009643) ENSPTRG00000049244 GRB2 (ENSPTRG00000009642) SLC25A19 (ENSPTRG00000009641) MIF4GD (ENSPTRG00000009640) MRPS7 (ENSPTRG00000009639) GGA3 (ENSPTRG00000009638) NUP85 (ENSPTRG00000009637) SUMO2 (ENSPTRG00000042199) ##22 JPT1 (ENSPTRG00000024246) NT5C (ENSPTRG00000009632) ARMC7 (ENSPTRG00000009631) SLC16A5 (ENSPTRG00000009630) ENSPTRG00000042959 KCTD2 (ENSPTRG00000009629) ATP5PD (ENSPTRG00000009628) MRPL58 (ENSPTRG00000009627) CDR2L (ENSPTRG00000009626) HID1 (ENSPTRG00000009625) OTOP3 (ENSPTRG00000009624) OTOP2 (ENSPTRG00000009623) USH1G (ENSPTRG00000009622) FADS6 (ENSPTRG00000009621) FDXR (ENSPTRG00000009620) Gorilla MODERN SPECIES 17 USO1 (ENSGGOG00000024897) ENSGGOG00000006635 ENSGGOG00000014014 SDAD1 (ENSGGOG00000006441) ENSGGOG00000027929 CXCL9 (ENSGGOG00000004606) CXCL10 (ENSGGOG00000010573) CXCL11 (ENSGGOG00000038857) ART3 (ENSGGOG00000011577) NUP54 (ENSGGOG00000008376) SCARB2 (ENSGGOG00000008387) FAM47E (ENSGGOG00000009455) STBD1 (ENSGGOG00000010777) CCDC158 (ENSGGOG00000007500) SHROOM3 (ENSGGOG00000004907) ENSGGOG00000041687 ##22 ENSGGOG00000001400 SOWAHB (ENSGGOG00000007620) SEPTIN11 (ENSGGOG00000015115) ENSGGOG00000028429 CCNI (ENSGGOG00000003624) CCNG2 (ENSGGOG00000000063) CXCL13 (ENSGGOG00000014120) CNOT6L (ENSGGOG00000023412) MRPL1 (ENSGGOG00000001304) FRAS1 (ENSGGOG00000003170) ENSGGOG00000038764 ANXA3 (ENSGGOG00000010223) BMP2K (ENSGGOG00000023805) PAQR3 (ENSGGOG00000007996) NAA11 (ENSGGOG00000012948) Platyrrhini ANCESTRAL SPECIES 1 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00940000164172 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620.i.a ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b.k.w ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00390000000703.h ENSGT00940000158336 ENSGT00390000003582.e.c.f ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Cebidae ANCESTRAL SPECIES 25 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00940000164172 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620.i.a ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b.k.w ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00390000000703.h ENSGT00940000158336 ENSGT00390000003582.e.c.f ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Marmoset MODERN SPECIES 17 SAP30BP (ENSCJAG00000014157) SMIM6 (ENSCJAG00000052484) SMIM5 (ENSCJAG00000074395) RECQL5 (ENSCJAG00000014183) MYO15B (ENSCJAG00000014244) LLGL2 (ENSCJAG00000014252) TSEN54 (ENSCJAG00000014278) CASKIN2 (ENSCJAG00000014303) TMEM94 (ENSCJAG00000014327) GRB2 (ENSCJAG00000043335) ENSCJAG00000078500 SLC25A19 (ENSCJAG00000014414) ENSCJAG00000014458 GGA3 (ENSCJAG00000014468) ENSCJAG00000014508 ENSCJAG00000039213 ##22 ENSCJAG00000014553 NT5C (ENSCJAG00000014578) ARMC7 (ENSCJAG00000014590) SLC16A5 (ENSCJAG00000014598) KCTD2 (ENSCJAG00000014605) ENSCJAG00000014622 MRPL58 (ENSCJAG00000047013) CDR2L (ENSCJAG00000086649) HID1 (ENSCJAG00000014648) OTOP3 (ENSCJAG00000014679) OTOP2 (ENSCJAG00000014684) USH1G (ENSCJAG00000014706) FADS6 (ENSCJAG00000083099) FDXR (ENSCJAG00000014726) GRIN2C (ENSCJAG00000014754) Cebidae_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 Capuchin MODERN SPECIES 136 ENSCCAG00000024738 TMEM125 (ENSCCAG00000019712) C1orf210 (ENSCCAG00000029915) TIE1 (ENSCCAG00000019700) MPL (ENSCCAG00000032993) ENSCCAG00000033410 ELOVL1 (ENSCCAG00000027180) MED8 (ENSCCAG00000031645) SZT2 (ENSCCAG00000029453) HYI (ENSCCAG00000027585) ENSCCAG00000036988 PTPRF (ENSCCAG00000029349) KDM4A (ENSCCAG00000025432) TRARG1 (ENSCCAG00000033358) ENSCCAG00000034432 ENSCCAG00000027695 ##22 CRK (ENSCCAG00000032085) MYO1C (ENSCCAG00000034285) INPP5K (ENSCCAG00000030656) PITPNA (ENSCCAG00000028388) SLC43A2 (ENSCCAG00000037132) SCARF1 (ENSCCAG00000019308) RILP (ENSCCAG00000037172) ENSCCAG00000031983 TLCD2 (ENSCCAG00000026610) WDR81 (ENSCCAG00000021856) SERPINF2 (ENSCCAG00000037096) SERPINF1 (ENSCCAG00000030318) SMYD4 (ENSCCAG00000029544) RPA1 (ENSCCAG00000010981) RTN4RL1 (ENSCCAG00000027154) Euarchontoglires_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 Glires ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 Rodentia DUPLICATION Rodentia DUPLICATION Rodentia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.a ##22 Rodentia_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.a ##22 Myomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.a ##22 Muroidea ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.a ##22 Muroidea_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.a ##22 Cricetidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.a ##22 Cricetidae_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.a ##22 Northern American deer mouse MODERN SPECIES 475 Tlr8 (ENSPEMG00000001415) Tmsb4x (ENSPEMG00000004099) ENSPEMG00000029647 ENSPEMG00000030086 Egfl6 (ENSPEMG00000012250) Tceanc (ENSPEMG00000025764) ENSPEMG00000013920 ENSPEMG00000030200 ENSPEMG00000013968 ENSPEMG00000014145 Rab9 (ENSPEMG00000027764) Trappc2 (ENSPEMG00000016002) Ofd1 (ENSPEMG00000017896) Gpm6b (ENSPEMG00000000655) ENSPEMG00000024383 ENSPEMG00000009181 ##22 Glra2 (ENSPEMG00000010716) ENSPEMG00000012662 Fancb (ENSPEMG00000014927) Mospd2 (ENSPEMG00000016810) Asb9 (ENSPEMG00000012020) Asb11 (ENSPEMG00000004210) Piga (ENSPEMG00000029436) Vegfd (ENSPEMG00000012888) Pir (ENSPEMG00000014083) Bmx (ENSPEMG00000017739) Ace2 (ENSPEMG00000016498) Cltrn (ENSPEMG00000009108) Car5b (ENSPEMG00000014305) ENSPEMG00000026938 ENSPEMG00000018871 Rodentia DUPLICATION Rodentia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.a ##22 Rodentia_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.a ##22 Myomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.a ##22 Muroidea ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.a ##22 Muroidea_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.a ##22 Cricetidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.a ##22 Cricetidae_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.a ##22 Northern American deer mouse MODERN SPECIES 7 ENSPEMG00000029424 Mtfr2 (ENSPEMG00000017505) Pde7b (ENSPEMG00000013435) ENSPEMG00000010391 Ahi1 (ENSPEMG00000007907) Myb (ENSPEMG00000000233) ENSPEMG00000024833 Hbs1l (ENSPEMG00000014369) Aldh8a1 (ENSPEMG00000013721) 1700020N01Rik (ENSPEMG00000011791) Sgk1 (ENSPEMG00000009727) Slc2a12 (ENSPEMG00000006268) Tbpl1 (ENSPEMG00000004800) Tcf21 (ENSPEMG00000003503) ENSPEMG00000025529 ENSPEMG00000025804 ##22 Eya4 (ENSPEMG00000018298) Rps12 (ENSPEMG00000021483) Slc18b1 (ENSPEMG00000022014) ENSPEMG00000030044 Vnn3 (ENSPEMG00000022899) Vnn1 (ENSPEMG00000021340) Taar1 (ENSPEMG00000022856) Taar2 (ENSPEMG00000020995) Taar3 (ENSPEMG00000001193) Taar4 (ENSPEMG00000015066) Taar5 (ENSPEMG00000001325) Taar6 (ENSPEMG00000007048) ENSPEMG00000027399 ENSPEMG00000009617 ENSPEMG00000030926 Rodentia DUPLICATION Rodentia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.b.a ##22 Rodentia_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.b.a ##22 Myomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.b.a ##22 Lesser Egyptian jerboa MODERN SPECIES 88 Ccr5 (ENSJJAG00000006289) Ccr2 (ENSJJAG00000005584) ENSJJAG00000011651 Ccr3 (ENSJJAG00000001840) ENSJJAG00000001737 Xcr1 (ENSJJAG00000022911) Fyco1 (ENSJJAG00000013645) ENSJJAG00000021682 ENSJJAG00000019040 ##22 Sacm1l (ENSJJAG00000017166) Limd1 (ENSJJAG00000016311) Lars2 (ENSJJAG00000009780) ENSJJAG00000000644 Cdcp1 (ENSJJAG00000011733) Clec3b (ENSJJAG00000015771) Exosc7 (ENSJJAG00000010398) Kif15 (ENSJJAG00000009979) 1110059G10Rik (ENSJJAG00000018631) Zfp105 (ENSJJAG00000010322) Zfp445 (ENSJJAG00000020739) Tcaim (ENSJJAG00000011997) Topaz1 (ENSJJAG00000015611) ENSJJAG00000000195 Ano10 (ENSJJAG00000017171) Muroidea ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.b.a ##22 Muroidea_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.b.a ##22 Murinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.b.a ##22 Mus ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.b.a ##22 Mus_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.b.a ##22 Mus_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.b.a ##22 Mus_C ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.b.a ##22 Steppe mouse MODERN SPECIES 3378 ENSMSIG00000014963 Foxl2 (ENSMSIG00000014987) ENSMSIG00000014993 7420426K07Rik (ENSMSIG00000015012) ENSMSIG00000015018 Prr23a3 (ENSMSIG00000015032) Prr23a1 (ENSMSIG00000015037) Mrps22 (ENSMSIG00000015058) Copb2 (ENSMSIG00000015074) ENSMSIG00000015116 Rbp2 (ENSMSIG00000015122) ENSMSIG00000015144 Nmnat3 (ENSMSIG00000015178) Clstn2 (ENSMSIG00000015272) Trim42 (ENSMSIG00000015370) ENSMSIG00000015401 ##22 Slc25a36 (ENSMSIG00000015406) Spsb4 (ENSMSIG00000015457) ENSMSIG00000015465 Pxylp1 (ENSMSIG00000015485) ENSMSIG00000015549 ENSMSIG00000015553 ENSMSIG00000015558 Zbtb38 (ENSMSIG00000015564) Rasa2 (ENSMSIG00000015576) Gm28729 (ENSMSIG00000015659) ENSMSIG00000015688 Atp1b3 (ENSMSIG00000015722) Tfdp2 (ENSMSIG00000015771) ENSMSIG00000015907 Xrn1 (ENSMSIG00000016035) Rodentia_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.b.a ##22 Sciuridae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.b.a ##22 Marmotini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.b.a ##22 Marmotini_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.b.a ##22 Squirrel MODERN SPECIES 322 IPO4 (ENSSTOG00000002288) REC8 (ENSSTOG00000002276) IRF9 (ENSSTOG00000023450) RNF31 (ENSSTOG00000002265) PSME2 (ENSSTOG00000002258) EMC9 (ENSSTOG00000002254) PSME1 (ENSSTOG00000022843) FITM1 (ENSSTOG00000007610) DCAF11 (ENSSTOG00000007585) PCK2 (ENSSTOG00000007537) ENSSTOG00000031715 NRL (ENSSTOG00000021648) CPNE6 (ENSSTOG00000028109) CARMIL3 (ENSSTOG00000007478) ENSSTOG00000025076 ENSSTOG00000027560 ##22 ENSSTOG00000022507 JPH4 (ENSSTOG00000027222) AP1G2 (ENSSTOG00000002671) THTPA (ENSSTOG00000002232) ZFHX2 (ENSSTOG00000002657) NGDN (ENSSTOG00000002637) MYH7 (ENSSTOG00000002580) CMTM5 (ENSSTOG00000002567) IL25 (ENSSTOG00000002561) EFS (ENSSTOG00000002556) SLC22A17 (ENSSTOG00000020548) PABPN1 (ENSSTOG00000029847) BCL2L2 (ENSSTOG00000002538) PPP1R3E (ENSSTOG00000024321) ENSSTOG00000020653 Rodentia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.b.b ##22 Rodentia_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.b.b ##22 Myomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.b.b ##22 Lesser Egyptian jerboa MODERN SPECIES 152 Pcyox1 (ENSJJAG00000007670) Tia1 (ENSJJAG00000017978) C87436 (ENSJJAG00000010930) Pcbp1 (ENSJJAG00000000737) Mxd1 (ENSJJAG00000020658) ENSJJAG00000022319 Gmcl1 (ENSJJAG00000012468) Anxa4 (ENSJJAG00000000304) ENSJJAG00000013258 ENSJJAG00000016529 ENSJJAG00000019811 Zdhhc19 (ENSJJAG00000021317) Slc51a (ENSJJAG00000001267) Pcyt1a (ENSJJAG00000011542) Dynlt2b (ENSJJAG00000017402) ENSJJAG00000010941 ##22 Rodentia_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.b.b ##22 Sciuridae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.b.b ##22 Marmotini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.b.b ##22 Marmotini_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.g.b.b.b ##22 Squirrel MODERN SPECIES 219 ENSSTOG00000021638 GNAZ (ENSSTOG00000014033) ENSSTOG00000008429 RAB36 (ENSSTOG00000008444) BCR (ENSSTOG00000008468) SPECC1L (ENSSTOG00000000157) ADORA2A (ENSSTOG00000019368) UPB1 (ENSSTOG00000000161) GUCD1 (ENSSTOG00000000165) SNRPD3 (ENSSTOG00000025674) LRRC75B (ENSSTOG00000032043) ENSSTOG00000014350 GGT5 (ENSSTOG00000022400) ENSSTOG00000032130 ##22 SUSD2 (ENSSTOG00000011833) CABIN1 (ENSSTOG00000011791) ENSSTOG00000034559 ENSSTOG00000011785 ENSSTOG00000003054 GSTT4 (ENSSTOG00000006561) ENSSTOG00000012540 ENSSTOG00000033899 ENSSTOG00000031135 MIF (ENSSTOG00000027209) SLC2A11 (ENSSTOG00000020245) DERL3 (ENSSTOG00000012421) SMARCB1 (ENSSTOG00000012408) MMP11 (ENSSTOG00000008225) CHCHD10 (ENSSTOG00000008241) Rodentia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.h ##22 Rodentia_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.h ##22 Sciuridae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.h ##22 Eurasian red squirrel MODERN SPECIES 17 VPS29 (ENSSVLG00005007954) FAM216A (ENSSVLG00005008041) GPN3 (ENSSVLG00005008116) ARPC3 (ENSSVLG00005008246) ANAPC7 (ENSSVLG00005008278) ATP2A2 (ENSSVLG00005008413) IFT81 (ENSSVLG00005008463) P2RX7 (ENSSVLG00005008511) P2RX4 (ENSSVLG00005008556) CAMKK2 (ENSSVLG00005008761) ANAPC5 (ENSSVLG00005009481) ENSSVLG00005009653 KDM2B (ENSSVLG00005009851) ORAI1 (ENSSVLG00005010170) MORN3 (ENSSVLG00005010192) ENSSVLG00005010235 ##22 TMEM120B (ENSSVLG00005010266) RHOF (ENSSVLG00005010298) SETD1B (ENSSVLG00005010371) HPD (ENSSVLG00005010436) PSMD9 (ENSSVLG00005010555) CFAP251 (ENSSVLG00005010652) BCL7A (ENSSVLG00005010793) MLXIP (ENSSVLG00005010931) LRRC43 (ENSSVLG00005011010) B3GNT4 (ENSSVLG00005011290) DIABLO (ENSSVLG00005011329) ENSSVLG00005011490 VPS33A (ENSSVLG00005011526) CLIP1 (ENSSVLG00005011698) ENSSVLG00005012827 Hystricomorpha ANCESTRAL SPECIES 24 ENSGT00940000170136 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00940000167865 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.h ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Hystricomorpha_a ANCESTRAL SPECIES 19 ENSGT00940000170136 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00940000167865 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.h ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Hystricomorpha_b ANCESTRAL SPECIES 12 ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00940000167865 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.h ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 ENSGT00940000156964.C Long-tailed chinchilla MODERN SPECIES 260 LLGL2 (ENSCLAG00000003673) TSEN54 (ENSCLAG00000002924) CASKIN2 (ENSCLAG00000002735) TMEM94 (ENSCLAG00000007251) GRB2 (ENSCLAG00000002956) ENSCLAG00000002668 MIF4GD (ENSCLAG00000006875) MRPS7 (ENSCLAG00000006648) GGA3 (ENSCLAG00000005647) NUP85 (ENSCLAG00000005075) ENSCLAG00000006132 ##22 JPT1 (ENSCLAG00000004909) NT5C (ENSCLAG00000004605) ARMC7 (ENSCLAG00000004526) SLC16A5 (ENSCLAG00000004360) KCTD2 (ENSCLAG00000003380) ATP5PD (ENSCLAG00000002791) MRPL58 (ENSCLAG00000002475) CDR2L (ENSCLAG00000002405) HID1 (ENSCLAG00000002294) OTOP3 (ENSCLAG00000006891) OTOP2 (ENSCLAG00000004741) USH1G (ENSCLAG00000004705) FADS6 (ENSCLAG00000004663) FDXR (ENSCLAG00000004273) GRIN2C (ENSCLAG00000003739) Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 12 SAP30BP (ENSHGLG00000013084) RECQL5 (ENSHGLG00000013222) ENSHGLG00000033122 ENSHGLG00000033495 LLGL2 (ENSHGLG00000011075) TSEN54 (ENSHGLG00000007979) CASKIN2 (ENSHGLG00000005483) TMEM94 (ENSHGLG00000006986) GRB2 (ENSHGLG00000005883) SLC25A19 (ENSHGLG00000005191) ENSHGLG00000050052 ENSHGLG00000050152 ENSHGLG00000040381 GGA3 (ENSHGLG00000011759) NUP85 (ENSHGLG00000011048) ENSHGLG00000010205 ##22 JPT1 (ENSHGLG00000009406) ENSHGLG00000008666 NT5C (ENSHGLG00000008726) SLC16A5 (ENSHGLG00000014697) ENSHGLG00000043791 ATP5PD (ENSHGLG00000008113) KCTD2 (ENSHGLG00000047503) MRPL58 (ENSHGLG00000007782) ENSHGLG00000049861 CDR2L (ENSHGLG00000034294) HID1 (ENSHGLG00000006397) OTOP3 (ENSHGLG00000006064) OTOP2 (ENSHGLG00000005732) USH1G (ENSHGLG00000005374) FADS6 (ENSHGLG00000005008) Naked mole-rat female MODERN SPECIES 11 INO80 (ENSHGLG00000018136) CHAC1 (ENSHGLG00000015660) DLL4 (ENSHGLG00000016140) VPS18 (ENSHGLG00000013278) RHOV (ENSHGLG00000018172) SPINT1 (ENSHGLG00000018272) PPP1R14D (ENSHGLG00000019253) ZFYVE19 (ENSHGLG00000010892) DNAJC17 (ENSHGLG00000009889) C15orf62 (ENSHGLG00000033545) RMDN3 (ENSHGLG00000009309) RAD51 (ENSHGLG00000018242) KNL1 (ENSHGLG00000049106) RPUSD2 (ENSHGLG00000012765) CCDC32 (ENSHGLG00000014485) ENSHGLG00000033763 ##22 CHST14 (ENSHGLG00000033751) BAHD1 (ENSHGLG00000012213) ENSHGLG00000043056 IVD (ENSHGLG00000011679) KNSTRN (ENSHGLG00000040791) ENSHGLG00000048346 ENSHGLG00000037601 CCDC9B (ENSHGLG00000015538) INAFM2 (ENSHGLG00000045548) PLCB2 (ENSHGLG00000012879) ANKRD63 (ENSHGLG00000050228) PAK6 (ENSHGLG00000016154) BUB1B (ENSHGLG00000016499) BMF (ENSHGLG00000013882) SRP14 (ENSHGLG00000013126) Rodentia_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.h ##22 Myomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.h ##22 Muroidea ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.h ##22 Muroidea_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.h ##22 Cricetidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.h ##22 Cricetinae ANCESTRAL SPECIES ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800 ENSGT00940000167442 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.h ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Chinese hamster chok1gshd MODERN SPECIES 33 Sap30bp (ENSCGRG00001016528) Smim6 (ENSCGRG00001012751) ENSCGRG00001012081 Recql5 (ENSCGRG00001011255) Myo15b (ENSCGRG00001018601) Llgl2 (ENSCGRG00001024918) Tsen54 (ENSCGRG00001020029) Caskin2 (ENSCGRG00001006565) Tmem94 (ENSCGRG00001022237) Grb2 (ENSCGRG00001017474) Slc25a19 (ENSCGRG00001015218) Mif4gd (ENSCGRG00001021723) Mrps7 (ENSCGRG00001021002) Gga3 (ENSCGRG00001019142) Nup85 (ENSCGRG00001022632) SUMO2 (ENSCGRG00001016720) ##22 Jpt1 (ENSCGRG00001017995) Nt5c (ENSCGRG00001024594) Armc7 (ENSCGRG00001010217) ENSCGRG00001009598 Trim80 (ENSCGRG00001007074) Kctd2 (ENSCGRG00001024836) ENSCGRG00001008781 Mrpl58 (ENSCGRG00001023339) Cdr2l (ENSCGRG00001018770) Hid1 (ENSCGRG00001020197) Otop3 (ENSCGRG00001025042) Otop2 (ENSCGRG00001017423) Ush1g (ENSCGRG00001016256) Fads6 (ENSCGRG00001015532) ENSCGRG00001000667 Murinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.h ##22 Rat MODERN SPECIES 15 Aptx (ENSRNOG00000006582) ENSRNOG00000063142 Tmem215 (ENSRNOG00000042246) ENSRNOG00000064831 Ndufb6 (ENSRNOG00000024539) Smim27 (ENSRNOG00000069822) Topors (ENSRNOG00000006485) Rig1 (ENSRNOG00000006384) Aco1 (ENSRNOG00000005849) RGD1306195 (ENSRNOG00000031013) Lingo2 (ENSRNOG00000005634) RGD1359108 (ENSRNOG00000009478) Ifnk (ENSRNOG00000022990) Mob3b (ENSRNOG00000009453) Cga (ENSRNOG00000009269) ENSRNOG00000063545 ##22 Zfp292 (ENSRNOG00000031031) Smim8 (ENSRNOG00000023035) C5h6orf163 (ENSRNOG00000009178) Cfap206 (ENSRNOG00000009061) Slc35a1 (ENSRNOG00000008908) Rars2 (ENSRNOG00000008643) Orc3 (ENSRNOG00000008314) Akirin2 (ENSRNOG00000008288) AABR07047835.1 (ENSRNOG00000023101) Spaca1 (ENSRNOG00000008232) Cnr1 (ENSRNOG00000008223) Rngtt (ENSRNOG00000007867) Pnrc1 (ENSRNOG00000007793) Srsf12 (ENSRNOG00000069984) Pm20d2 (ENSRNOG00000007755) Mus ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.h ##22 Mus_A ANCESTRAL SPECIES 2 ENSGT00940000167442 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b.k.y.d ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.h ##22 ENSGT00940000162422.i.a ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e.n ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00940000165377 Mus_B ANCESTRAL SPECIES 2 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870.d ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.h ##22 ENSGT00940000162422.i.a ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e.n ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00940000165377 Mus_C ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a.h ##22 Steppe mouse MODERN SPECIES 2769 ENSMSIG00000017221 ENSMSIG00000017474 ##22 Mouse MODERN SPECIES 2 Sap30bp (ENSMUSG00000020755) Smim6 (ENSMUSG00000075420) Smim5 (ENSMUSG00000048442) Recql5 (ENSMUSG00000020752) Myo15b (ENSMUSG00000034427) Llgl2 (ENSMUSG00000020782) Tsen54 (ENSMUSG00000020781) Caskin2 (ENSMUSG00000034471) Tmem94 (ENSMUSG00000020747) Grb2 (ENSMUSG00000059923) Slc25a19 (ENSMUSG00000020744) Mif4gd (ENSMUSG00000020743) Mrps7 (ENSMUSG00000046756) Gga3 (ENSMUSG00000020740) Nup85 (ENSMUSG00000020739) Sumo2 (ENSMUSG00000020738) ##22 Jpt1 (ENSMUSG00000020737) Nt5c (ENSMUSG00000020736) Armc7 (ENSMUSG00000057219) Slc16a5 (ENSMUSG00000045775) Trim80 (ENSMUSG00000070332) Kctd2 (ENSMUSG00000016940) Atp5h (ENSMUSG00000034566) Mrpl58 (ENSMUSG00000018858) Cdr2l (ENSMUSG00000050910) Hid1 (ENSMUSG00000034586) Otop3 (ENSMUSG00000018862) Ush1g (ENSMUSG00000045288) Otop2 (ENSMUSG00000050201) Fads6 (ENSMUSG00000044788) Fdxr (ENSMUSG00000018861) Marsupialia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 Marsupialia_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 Diprotodontia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 Diprotodontia_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 Common wonbat MODERN SPECIES 1037 ITGB4 (ENSVURG00010011475) ENSVURG00010011557 RECQL5 (ENSVURG00010011571) SMIM5 (ENSVURG00010011608) ENSVURG00010011618 LLGL2 (ENSVURG00010011636) TSEN54 (ENSVURG00010011686) ENSVURG00010011710 TMEM94 (ENSVURG00010011727) GRB2 (ENSVURG00010011830) SLC25A19 (ENSVURG00010011865) MIF4GD (ENSVURG00010011874) MRPS7 (ENSVURG00010011908) GGA3 (ENSVURG00010011921) NUP85 (ENSVURG00010011954) ENSVURG00010011997 ##22 JPT1 (ENSVURG00010012011) NT5C (ENSVURG00010012024) ENSVURG00010012036 SLC16A5 (ENSVURG00010012048) ENSVURG00010012053 ENSVURG00010012062 ENSVURG00010012072 MRPL58 (ENSVURG00010012084) CDR2L (ENSVURG00010012094) HID1 (ENSVURG00010012102) ENSVURG00010012118 OTOP2 (ENSVURG00010012122) USH1G (ENSVURG00010012127) FADS6 (ENSVURG00010012129) FDXR (ENSVURG00010012140) Theria DUPLICATION Theria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a ##22 Eutheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a ##22 Boreoeutheria DUPLICATION Boreoeutheria DUPLICATION Boreoeutheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.a ##22 Euarchontoglires ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.a ##22 Primates ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.a ##22 Haplorrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.a ##22 Simiiformes ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.a ##22 Catarrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.a ##22 Cercopithecidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.a ##22 Cercopithecinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.a ##22 Cercopithecinae_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.a ##22 Cercopithecinae_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.a ##22 Olive baboon MODERN SPECIES 13 ENSPANG00000032958 ENSPANG00000046616 ENSPANG00000040313 ENSPANG00000039911 ADGRL3 (ENSPANG00000012150) ENSPANG00000045501 ENSPANG00000029695 ENSPANG00000044632 ENSPANG00000049706 TECRL (ENSPANG00000026371) ENSPANG00000043743 ENSPANG00000015098 ENSPANG00000045323 EPHA5 (ENSPANG00000026369) ENSPANG00000041040 ENSPANG00000015418 ##22 CENPC (ENSPANG00000013420) STAP1 (ENSPANG00000019724) UBA6 (ENSPANG00000018468) GNRHR (ENSPANG00000048494) TMPRSS11D (ENSPANG00000016170) TMPRSS11A (ENSPANG00000013421) TMPRSS11F (ENSPANG00000019727) TMPRSS11B (ENSPANG00000008261) YTHDC1 (ENSPANG00000021590) ENSPANG00000014319 TMPRSS11E (ENSPANG00000016826) UGT2B39 (ENSPANG00000030215) ENSPANG00000004166 UGT2A3 (ENSPANG00000031672) UGT2B42 (ENSPANG00000016827) Euarchontoglires_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.a ##22 Glires ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.a ##22 Rodentia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.a ##22 Rodentia_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.a ##22 Myomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.a ##22 Lesser Egyptian jerboa MODERN SPECIES 66 1110017D15Rik (ENSJJAG00000017096) Fam219a (ENSJJAG00000010095) ENSJJAG00000005743 Enho (ENSJJAG00000004696) Cntfr (ENSJJAG00000011937) Rpp25l (ENSJJAG00000008971) Dctn3 (ENSJJAG00000003095) Arid3c (ENSJJAG00000022167) Sigmar1 (ENSJJAG00000014555) Galt (ENSJJAG00000023869) ENSJJAG00000021304 ENSJJAG00000014932 ENSJJAG00000013492 Ccl19 (ENSJJAG00000017038) ENSJJAG00000023174 ENSJJAG00000019575 ##22 ENSJJAG00000013137 ENSJJAG00000014996 ENSJJAG00000008982 Phf24 (ENSJJAG00000020569) Dnajb5 (ENSJJAG00000017881) 1700022I11Rik (ENSJJAG00000017366) Vcp (ENSJJAG00000011279) Fancg (ENSJJAG00000001037) Pigo (ENSJJAG00000013319) Stoml2 (ENSJJAG00000000653) ENSJJAG00000004248 ENSJJAG00000020741 ENSJJAG00000019777 Atp8b5 (ENSJJAG00000014837) ENSJJAG00000002181 Laurasiatheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.a ##22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.a ##22 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.a ##22 Carnivora ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.a ##22 Felidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.a ##22 Panthera ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.a ##22 Panthera_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.a ##22 leopard MODERN SPECIES 8 CRYBG1 (ENSPPRG00000010238) ATG5 (ENSPPRG00000012874) PRDM1 (ENSPPRG00000011148) PREP (ENSPPRG00000013298) POPDC3 (ENSPPRG00000013616) BVES (ENSPPRG00000015358) LIN28B (ENSPPRG00000016158) HACE1 (ENSPPRG00000021923) ENSPPRG00000001508 ENSPPRG00000002223 GRIK2 (ENSPPRG00000007805) ENSPPRG00000009471 ASCC3 (ENSPPRG00000011358) SIM1 (ENSPPRG00000012016) MCHR2 (ENSPPRG00000012296) ENSPPRG00000013213 ##22 ENSPPRG00000013407 PRDM13 (ENSPPRG00000014466) CCNC (ENSPPRG00000021173) ENSPPRG00000022482 TSTD3 (ENSPPRG00000023365) USP45 (ENSPPRG00000000211) PNISR (ENSPPRG00000001237) COQ3 (ENSPPRG00000001796) FAXC (ENSPPRG00000002688) FBXL4 (ENSPPRG00000003955) ENSPPRG00000005436 MMS22L (ENSPPRG00000006961) KLHL32 (ENSPPRG00000008719) NDUFAF4 (ENSPPRG00000008944) GPR63 (ENSPPRG00000019835) Tiger MODERN SPECIES 211 ENSPTIG00000005916 ##22 ENSPTIG00000005296 CCNC (ENSPTIG00000019192) TSTD3 (ENSPTIG00000018302) USP45 (ENSPTIG00000016311) PNISR (ENSPTIG00000015159) COQ3 (ENSPTIG00000014871) FAXC (ENSPTIG00000014344) FBXL4 (ENSPTIG00000013804) ENSPTIG00000013287 MMS22L (ENSPTIG00000011552) KLHL32 (ENSPTIG00000008581) NDUFAF4 (ENSPTIG00000008338) GPR63 (ENSPTIG00000002988) FHL5 (ENSPTIG00000007683) UFL1 (ENSPTIG00000007297) Boreoeutheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.b ##22 Laurasiatheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.b ##22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.b ##22 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.b ##22 Carnivora ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.b ##22 Felidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.b ##22 Panthera ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.a.b ##22 Tiger MODERN SPECIES 353 SMIM5 (ENSPTIG00000020992) RECQL5 (ENSPTIG00000020601) ENSPTIG00000020332 ENSPTIG00000020188 ENSPTIG00000020097 ENSPTIG00000019340 TSEN54 (ENSPTIG00000019312) ENSPTIG00000019291 TMEM94 (ENSPTIG00000018810) GRB2 (ENSPTIG00000018194) SLC25A19 (ENSPTIG00000018082) MIF4GD (ENSPTIG00000017368) MRPS7 (ENSPTIG00000017217) GGA3 (ENSPTIG00000016689) NUP85 (ENSPTIG00000016127) ENSPTIG00000015602 ##22 JPT1 (ENSPTIG00000015314) ENSPTIG00000015295 ARMC7 (ENSPTIG00000015259) SLC16A5 (ENSPTIG00000015026) ENSPTIG00000014967 ATP5PD (ENSPTIG00000014910) MRPL58 (ENSPTIG00000014767) CDR2L (ENSPTIG00000014674) HID1 (ENSPTIG00000014334) OTOP3 (ENSPTIG00000014197) OTOP2 (ENSPTIG00000014148) FADS6 (ENSPTIG00000014073) FDXR (ENSPTIG00000013987) ENSPTIG00000013891 TMEM104 (ENSPTIG00000013816) Boreoeutheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Laurasiatheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Artiodactyla ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Artiodactyla_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Artiodactyla_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Pecora ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Percora_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Bovidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Bovinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Bos ANCESTRAL SPECIES 1 ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00390000003582.p ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00390000004856.w.a.a.b.a ENSGT00950000182990.b Bos_a ANCESTRAL SPECIES ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 Wild yak MODERN SPECIES 2179 SMIM5 (ENSBMUG00000009473) RECQL5 (ENSBMUG00000009453) ENSBMUG00000009426 ENSBMUG00000009401 LLGL2 (ENSBMUG00000009320) TSEN54 (ENSBMUG00000009235) CASKIN2 (ENSBMUG00000009108) TMEM94 (ENSBMUG00000008975) ENSBMUG00000008805 GRB2 (ENSBMUG00000008776) SLC25A19 (ENSBMUG00000008730) MIF4GD (ENSBMUG00000008707) MRPS7 (ENSBMUG00000008671) GGA3 (ENSBMUG00000008606) NUP85 (ENSBMUG00000008558) ENSBMUG00000008531 ##22 JPT1 (ENSBMUG00000008515) NT5C (ENSBMUG00000008501) ARMC7 (ENSBMUG00000008486) SLC16A5 (ENSBMUG00000008466) ENSBMUG00000008451 ENSBMUG00000008440 ENSBMUG00000008429 MRPL58 (ENSBMUG00000008386) CDR2L (ENSBMUG00000008369) HID1 (ENSBMUG00000008352) OTOP3 (ENSBMUG00000008326) OTOP2 (ENSBMUG00000008300) USH1G (ENSBMUG00000008257) FADS6 (ENSBMUG00000008245) FDXR (ENSBMUG00000008198) Caprinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Rambouillet Sheep MODERN SPECIES 205 MAGED1 (ENSOARG00020012029) ENSOARG00020012125 GSPT2 (ENSOARG00020012218) NUDT11 (ENSOARG00020012251) ENSOARG00020012280 NUDT10 (ENSOARG00020012367) BMP15 (ENSOARG00020012408) SHROOM4 (ENSOARG00020012479) ENSOARG00020012881 DGKK (ENSOARG00020012970) AKAP4 (ENSOARG00020013343) ENSOARG00020013454 CLCN5 (ENSOARG00020013496) USP27X (ENSOARG00020013745) ENSOARG00020013763 ENSOARG00020013820 ##22 ENSOARG00020013855 PPP1R3F (ENSOARG00020013933) FOXP3 (ENSOARG00020014024) CCDC22 (ENSOARG00020014199) CACNA1F (ENSOARG00020014375) SYP (ENSOARG00020015519) PRICKLE3 (ENSOARG00020015597) ENSOARG00020015731 MAGIX (ENSOARG00020015816) GPKOW (ENSOARG00020016283) ENSOARG00020016383 WDR45 (ENSOARG00020016450) PRAF2 (ENSOARG00020016835) CCDC120 (ENSOARG00020016906) TFE3 (ENSOARG00020017512) Laurasiatheria_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Carnivora ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Caniformia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Canidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Canis_lupus ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Dingo MODERN SPECIES 217 ENSCAFG00020005401 EIF2S3B (ENSCAFG00020005385) KLHL15 (ENSCAFG00020005384) CXorf58 (ENSCAFG00020005375) SAT1 (ENSCAFG00020005373) ACOT9 (ENSCAFG00020005354) PRDX4 (ENSCAFG00020005348) PTCHD1 (ENSCAFG00020005326) ENSCAFG00020005312 ENSCAFG00020005279 PHEX (ENSCAFG00020005217) ENSCAFG00020005174 MBTPS2 (ENSCAFG00020005119) SMPX (ENSCAFG00020005104) CNKSR2 (ENSCAFG00020004670) ENSCAFG00020004620 ##22 RPS6KA3 (ENSCAFG00020004599) EIF1AX (ENSCAFG00020004588) MAP7D2 (ENSCAFG00020004579) ENSCAFG00020004575 SH3KBP1 (ENSCAFG00020004559) MAP3K15 (ENSCAFG00020004533) PDHA1 (ENSCAFG00020004526) ADGRG2 (ENSCAFG00020004286) PHKA2 (ENSCAFG00020004228) PPEF1 (ENSCAFG00020004211) RS1 (ENSCAFG00020004187) ENSCAFG00020004181 CDKL5 (ENSCAFG00020004060) SCML2 (ENSCAFG00020004011) RAI2 (ENSCAFG00020004001) Red fox MODERN SPECIES 24 KLHL15 (ENSVVUG00000012733) CXorf58 (ENSVVUG00000012739) ENSVVUG00000012745 SAT1 (ENSVVUG00000012751) ACOT9 (ENSVVUG00000012758) PRDX4 (ENSVVUG00000012770) PTCHD1 (ENSVVUG00000012785) ENSVVUG00000012789 PHEX (ENSVVUG00000012831) ENSVVUG00000012939 MBTPS2 (ENSVVUG00000012954) SMPX (ENSVVUG00000012956) ENSVVUG00000012959 CNKSR2 (ENSVVUG00000012970) ENSVVUG00000012984 ENSVVUG00000012987 ##22 RPS6KA3 (ENSVVUG00000013013) EIF1AX (ENSVVUG00000013024) MAP7D2 (ENSVVUG00000013035) BCLAF3 (ENSVVUG00000013082) SH3KBP1 (ENSVVUG00000013144) ENSVVUG00000013205 ENSVVUG00000013215 MAP3K15 (ENSVVUG00000013244) PDHA1 (ENSVVUG00000013392) ADGRG2 (ENSVVUG00000013420) PPEF1 (ENSVVUG00000014157) ENSVVUG00000014199 CDKL5 (ENSVVUG00000014210) ENSVVUG00000014243 ENSVVUG00000014245 Caniformia_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Ursidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Giant Panda MODERN SPECIES MCM3AP (ENSAMEG00000001319) LSS (ENSAMEG00000001378) SPATC1L (ENSAMEG00000001442) FTCD (ENSAMEG00000001451) COL6A2 (ENSAMEG00000001501) COL6A1 (ENSAMEG00000001581) PCBP3 (ENSAMEG00000001697) SLC19A1 (ENSAMEG00000001754) COL18A1 (ENSAMEG00000001767) ENSAMEG00000001853 ENSAMEG00000025761 ADARB1 (ENSAMEG00000001885) ENSAMEG00000001918 ITGB2 (ENSAMEG00000001924) ENSAMEG00000025067 #21 ENSAMEG00000002071 ##22 ENSAMEG00000002073 #23 ENSAMEG00000028758 ENSAMEG00000031221 ENSAMEG00000028544 ENSAMEG00000029366 ENSAMEG00000031142 ENSAMEG00000025346 #24 TRPM2 (ENSAMEG00000010610) #25 CFAP410 (ENSAMEG00000010739) PFKL (ENSAMEG00000010751) AIRE (ENSAMEG00000010859) ENSAMEG00000010872 ENSAMEG00000010883 GATD3 (ENSAMEG00000010894) PWP2 (ENSAMEG00000010907) Euarchontoglires ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Euarchontoglires_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Glires ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Rodentia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Rodentia_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Myomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Muroidea ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Muroidea_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Murinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Mus ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Mus_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Mus_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Mus_C ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Steppe mouse MODERN SPECIES 1056 ENSMSIG00000002329 ##22 Cricetidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Cricetidae_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Northern American deer mouse MODERN SPECIES 1 Spp1 (ENSPEMG00000009651) Pkd2 (ENSPEMG00000010682) ENSPEMG00000026974 Thoc2l (ENSPEMG00000011125) ENSPEMG00000011871 ENSPEMG00000030651 ENSPEMG00000031325 ENSPEMG00000021964 Lrrc8b (ENSPEMG00000005562) Lrrc8c (ENSPEMG00000013757) Lrrc8d (ENSPEMG00000021996) Zfp326 (ENSPEMG00000018327) Barhl2 (ENSPEMG00000026467) Zfp644 (ENSPEMG00000014688) ENSPEMG00000024502 ENSPEMG00000030938 ##22 Hfm1 (ENSPEMG00000022852) Cdc7 (ENSPEMG00000022245) Tgfbr3 (ENSPEMG00000022511) Brdt (ENSPEMG00000022451) ENSPEMG00000029986 Ephx4 (ENSPEMG00000022572) Lpcat2b (ENSPEMG00000015365) ENSPEMG00000021654 Btbd8 (ENSPEMG00000014093) 1700028K03Rik (ENSPEMG00000021512) Glmn (ENSPEMG00000023068) Rpap2 (ENSPEMG00000022421) Gfi1 (ENSPEMG00000024396) Evi5 (ENSPEMG00000016471) Ube2d2b (ENSPEMG00000028655) Prairie vole MODERN SPECIES 16 Lipa (ENSMOCG00000018201) Ch25h (ENSMOCG00000010445) Fas (ENSMOCG00000000870) Acta2 (ENSMOCG00000022350) Stambpl1 (ENSMOCG00000003028) Ankrd22 (ENSMOCG00000022828) Lipm (ENSMOCG00000012585) Lipn (ENSMOCG00000021083) Lipk (ENSMOCG00000015423) Lipf (ENSMOCG00000013237) Rnls (ENSMOCG00000004956) ENSMOCG00000002723 ENSMOCG00000002138 Atad1 (ENSMOCG00000013771) Papss2 (ENSMOCG00000001274) ENSMOCG00000001064 ##22 Minpp1 (ENSMOCG00000003112) Sgms1 (ENSMOCG00000021620) Asah2 (ENSMOCG00000003980) A1cf (ENSMOCG00000021536) Cstf2t (ENSMOCG00000020428) Prkg1 (ENSMOCG00000008936) Dkk1 (ENSMOCG00000003507) ENSMOCG00000000632 Mbl2 (ENSMOCG00000022089) Gldc (ENSMOCG00000010831) Uhrf2 (ENSMOCG00000000695) Il33 (ENSMOCG00000012740) Ranbp6 (ENSMOCG00000010374) 9930021J03Rik (ENSMOCG00000020946) Mlana (ENSMOCG00000005161) Rodentia_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Hystricomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Naked mole-rat female MODERN SPECIES 4 ENSHGLG00000014910 PLCE1 (ENSHGLG00000013624) SLC35G1 (ENSHGLG00000014527) ENSHGLG00000032608 LGI1 (ENSHGLG00000034142) ENSHGLG00000036961 FRA10AC1 (ENSHGLG00000016660) PDE6C (ENSHGLG00000011305) RBP4 (ENSHGLG00000008358) FFAR4 (ENSHGLG00000007702) CEP55 (ENSHGLG00000006591) MYOF (ENSHGLG00000016065) ENSHGLG00000045003 CYP26A1 (ENSHGLG00000015940) CYP26C1 (ENSHGLG00000015899) ENSHGLG00000039738 ##22 ENSHGLG00000042956 EXOC6 (ENSHGLG00000012531) HHEX (ENSHGLG00000033111) KIF11 (ENSHGLG00000014395) IDE (ENSHGLG00000012665) MARCH5 (ENSHGLG00000044946) CPEB3 (ENSHGLG00000014022) BTAF1 (ENSHGLG00000010425) FGFBP3 (ENSHGLG00000046261) TNKS2 (ENSHGLG00000018423) PPP1R3C (ENSHGLG00000045942) ENSHGLG00000033981 HECTD2 (ENSHGLG00000013810) PCGF5 (ENSHGLG00000016348) ENSHGLG00000047830 Hystricomorpha_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Hystricomorpha_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Long-tailed chinchilla MODERN SPECIES 114 YBEY (ENSCLAG00000006892) MCM3AP (ENSCLAG00000013358) LSS (ENSCLAG00000011987) SPATC1L (ENSCLAG00000016436) FTCD (ENSCLAG00000014029) COL6A2 (ENSCLAG00000009215) COL6A1 (ENSCLAG00000004686) PCBP3 (ENSCLAG00000006667) SLC19A1 (ENSCLAG00000005746) COL18A1 (ENSCLAG00000009590) POFUT2 (ENSCLAG00000014869) ADARB1 (ENSCLAG00000010595) SLX9 (ENSCLAG00000015540) ITGB2 (ENSCLAG00000011530) PTTG1IP (ENSCLAG00000008686) #21 ENSCLAG00000006914 ##22 UBE2G2 (ENSCLAG00000006675) #23 ENSCLAG00000006283 ENSCLAG00000005933 ENSCLAG00000005246 ENSCLAG00000004501 ENSCLAG00000007645 ENSCLAG00000005431 TSPEAR (ENSCLAG00000006788) #24 PDXK (ENSCLAG00000004982) CSTB (ENSCLAG00000009970) RRP1 (ENSCLAG00000011639) AGPAT3 (ENSCLAG00000005641) TRAPPC10 (ENSCLAG00000004935) PWP2 (ENSCLAG00000009503) GATD3 (ENSCLAG00000006863) Degu DUPLICATION Degu MODERN SPECIES 557 ENSODEG00000018516 ##22 Degu MODERN SPECIES 89 ENSODEG00000009234 PRR7 (ENSODEG00000008439) ENSODEG00000007718 F12 (ENSODEG00000007843) PFN3 (ENSODEG00000019642) SLC34A1 (ENSODEG00000008984) RGS14 (ENSODEG00000008910) LMAN2 (ENSODEG00000008706) MXD3 (ENSODEG00000008997) ENSODEG00000008532 RAB24 (ENSODEG00000010425) NSD1 (ENSODEG00000008528) ENSODEG00000009111 FGFR4 (ENSODEG00000009549) ZNF346 (ENSODEG00000009676) ENSODEG00000008730 ##22 ENSODEG00000008782 HK3 (ENSODEG00000010441) UNC5A (ENSODEG00000011276) TSPAN17 (ENSODEG00000008692) EIF4E1B (ENSODEG00000009390) ENSODEG00000019694 SNCB (ENSODEG00000009803) GPRIN1 (ENSODEG00000010414) CDHR2 (ENSODEG00000008691) RNF44 (ENSODEG00000009421) ENSODEG00000009449 CLTB (ENSODEG00000008557) ENSODEG00000009305 NOP16 (ENSODEG00000009586) ARL10 (ENSODEG00000009842) Primates ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Strepsirrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Lemuriformes ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Mouse lemur MODERN SPECIES NFKBIZ (ENSMICG00000048907) NXPE3 (ENSMICG00000048875) CEP97 (ENSMICG00000049248) RPL24 (ENSMICG00000049277) ZBTB11 (ENSMICG00000049238) ENSMICG00000049084 SENP7 (ENSMICG00000049322) ENSMICG00000049138 IMPG2 (ENSMICG00000049387) ABI3BP (ENSMICG00000049175) TFG (ENSMICG00000049522) ADGRG7 (ENSMICG00000049327) ENSMICG00000049110 ENSMICG00000048831 ENSMICG00000049055 ENSMICG00000048985 ##22 LNP1 (ENSMICG00000049303) TOMM70 (ENSMICG00000049013) NIT2 (ENSMICG00000049078) ENSMICG00000049081 ENSMICG00000049197 CMSS1 (ENSMICG00000048977) FILIP1L (ENSMICG00000049406) COL8A1 (ENSMICG00000049100) DCBLD2 (ENSMICG00000049459) ST3GAL6 (ENSMICG00000048898) CPOX (ENSMICG00000049321) GPR15 (ENSMICG00000049066) CLDND1 (ENSMICG00000049358) OR5K3 (ENSMICG00000049496) ENSMICG00000049519 Haplorrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Tarsier MODERN SPECIES 5062 SLC19A1 (ENSTSYG00000033572) COL18A1 (ENSTSYG00000035694) POFUT2 (ENSTSYG00000005885) ADARB1 (ENSTSYG00000014318) FAM207A (ENSTSYG00000030177) ITGB2 (ENSTSYG00000013702) PTTG1IP (ENSTSYG00000004341) #21 ENSTSYG00000031915 ##22 UBE2G2 (ENSTSYG00000036218) #23 ENSTSYG00000034522 ENSTSYG00000019486 ENSTSYG00000035930 ENSTSYG00000037447 ENSTSYG00000035250 ENSTSYG00000033147 ENSTSYG00000030900 ENSTSYG00000030055 TSPEAR (ENSTSYG00000006727) #24 Simiiformes ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Platyrrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Mas night monkey MODERN SPECIES 1051 ENSANAG00000017175 ENSANAG00000026341 ENSANAG00000026542 ENSANAG00000020014 ENSANAG00000021854 ENSANAG00000021996 ENSANAG00000035423 ENSANAG00000024049 ENSANAG00000021180 ENSANAG00000024139 ENSANAG00000028031 ENSANAG00000023781 ##22 ENSANAG00000029494 ENSANAG00000022542 Catarrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Cercopithecidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Rhinopithecus ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Golden snub-nosed monkey MODERN SPECIES 1131 ENSRROG00000003868 ##22 Black snub-nosed monkey MODERN SPECIES 431 SORD (ENSRBIG00000032673) DUOX2 (ENSRBIG00000008925) DUOXA2 (ENSRBIG00000041760) DUOXA1 (ENSRBIG00000039914) DUOX1 (ENSRBIG00000032046) SHF (ENSRBIG00000042047) SLC28A2 (ENSRBIG00000009833) GATM (ENSRBIG00000044687) SPATA5L1 (ENSRBIG00000044670) ENSRBIG00000044664 SLC30A4 (ENSRBIG00000037551) ENSRBIG00000039148 BLOC1S6 (ENSRBIG00000030456) ENSRBIG00000029531 SQOR (ENSRBIG00000027944) ENSRBIG00000016675 ##22 ENSRBIG00000030189 SEMA6D (ENSRBIG00000044260) SLC24A5 (ENSRBIG00000035384) MYEF2 (ENSRBIG00000037503) CTXN2 (ENSRBIG00000027305) SLC12A1 (ENSRBIG00000032330) DUT (ENSRBIG00000022908) FBN1 (ENSRBIG00000044019) CEP152 (ENSRBIG00000028398) SHC4 (ENSRBIG00000031241) SECISBP2L (ENSRBIG00000030953) COPS2 (ENSRBIG00000039767) ENSRBIG00000033524 ENSRBIG00000029568 Cercopithecinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Cercopithecinae_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Macaca ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Macaca_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 Crab-eating macaque MODERN SPECIES 18 RDH10 (ENSMFAG00000031473) SBSPON (ENSMFAG00000046053) TERF1 (ENSMFAG00000000674) KCNB2 (ENSMFAG00000039161) TRPA1 (ENSMFAG00000045263) MSC (ENSMFAG00000049214) ENSMFAG00000057125 EYA1 (ENSMFAG00000030151) ENSMFAG00000062614 XKR9 (ENSMFAG00000040868) LACTB2 (ENSMFAG00000033253) TRAM1 (ENSMFAG00000002631) NCOA2 (ENSMFAG00000017985) ENSMFAG00000061020 PRDM14 (ENSMFAG00000044991) ENSMFAG00000053484 ##22 ENSMFAG00000063605 SLCO5A1 (ENSMFAG00000037298) SULF1 (ENSMFAG00000043436) C8orf34 (ENSMFAG00000045715) PREX2 (ENSMFAG00000031374) ENSMFAG00000062041 CPA6 (ENSMFAG00000039794) ARFGEF1 (ENSMFAG00000030778) CSPP1 (ENSMFAG00000046172) COPS5 (ENSMFAG00000037786) PPP1R42 (ENSMFAG00000001342) TCF24 (ENSMFAG00000038608) MCMDC2 (ENSMFAG00000046262) ENSMFAG00000060024 SGK3 (ENSMFAG00000037162) Cercopithecinae_b ANCESTRAL SPECIES 9 ENSGT00950000182878.b.a.c.a.a.b.j ENSGT00940000161199.a ENSGT00700000106212 ENSGT00390000008325.b.b ENSGT00940000155268.e ENSGT00940000161902.a.a ENSGT00940000156118 ENSGT00940000160438 ENSGT00950000182978.A.a.b.a ENSGT01090000260093.a ENSGT00390000001710 ENSGT00510000046470.a.a.a.d.a ENSGT00940000153288.a.a.h ENSGT00950000183021.a.a.b ENSGT00940000159454 ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 ENSGT01080000257410.B.a ENSGT00940000157544 ENSGT00390000005870 ENSGT00940000155894 ENSGT00940000159307 ENSGT00940000157108 ENSGT00390000015084.d ENSGT00550000074850.l ENSGT00910000146934 ENSGT00940000158260 ENSGT00940000162447 ENSGT00990000204339 ENSGT01090000260080.b.b ENSGT00940000153776.a.a ENSGT00390000009693.m.a Cercopithecinae_d ANCESTRAL SPECIES 31 ENSGT00950000182878.b.a.c.a.a.b.j ENSGT00940000161199.a ENSGT00700000106212 ENSGT00390000008325.b.b ENSGT00940000155268.e ENSGT00940000161902.a.a ENSGT00940000156118 ENSGT00940000160438 ENSGT00950000182978.A.a.b.a ENSGT01090000260093.a ENSGT00390000001710 ENSGT00510000046470.a.a.a.d.a ENSGT00940000153288.a.a.h ENSGT00950000183021.a.a.b ENSGT00940000159454 ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 ENSGT01080000257410.B.a ENSGT00940000157544 ENSGT00390000005870 ENSGT00940000155894 ENSGT00940000159307 ENSGT00940000157108 ENSGT00390000015084.d ENSGT00550000074850.l ENSGT00910000146934 ENSGT00940000158260 ENSGT00940000162447 ENSGT00990000204339 ENSGT01090000260080.b.b ENSGT00940000153776.a.a ENSGT00390000009693.m.a Sooty mangabey MODERN SPECIES 347 ENSCATG00000041442 ENSCATG00000038768 ZNF43 (ENSCATG00000015171) ENSCATG00000040544 ENSCATG00000037181 ENSCATG00000028186 ENSCATG00000018950 ZNF493 (ENSCATG00000021321) ENSCATG00000038735 ##22 ENSCATG00000042298 ENSCATG00000043096 ZNF708 (ENSCATG00000041053) ENSCATG00000037324 ENSCATG00000019608 ENSCATG00000040398 ENSCATG00000037230 ENSCATG00000038348 ENSCATG00000038194 ZNF682 (ENSCATG00000040224) ENSCATG00000039728 ZNF93 (ENSCATG00000042867) ENSCATG00000037145 ZNF14 (ENSCATG00000028572) ZNF101 (ENSCATG00000020203) Drill MODERN SPECIES 584 TRAM1 (ENSMLEG00000043709) ENSMLEG00000031623 NCOA2 (ENSMLEG00000034329) PRDM14 (ENSMLEG00000027772) ENSMLEG00000023557 ##22 ENSMLEG00000041678 ENSMLEG00000030182 SLCO5A1 (ENSMLEG00000036819) SULF1 (ENSMLEG00000036884) C8orf34 (ENSMLEG00000033292) PREX2 (ENSMLEG00000004343) CPA6 (ENSMLEG00000039764) ARFGEF1 (ENSMLEG00000043500) ENSMLEG00000035224 CSPP1 (ENSMLEG00000007846) ENSMLEG00000015396 ENSMLEG00000035973 ENSMLEG00000041065 PPP1R42 (ENSMLEG00000040981) TCF24 (ENSMLEG00000039858) Theria DUPLICATION Theria DUPLICATION Theria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Marsupialia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Marsupialia_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Diprotodontia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Diprotodontia_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 koala MODERN SPECIES 32 UAP1 (ENSPCIG00000021509) UHMK1 (ENSPCIG00000021507) ENSPCIG00000021505 ENSPCIG00000021501 SPATA46 (ENSPCIG00000021503) ENSPCIG00000033694 ATF6 (ENSPCIG00000016241) DUSP12 (ENSPCIG00000016253) FCRLB (ENSPCIG00000016255) ENSPCIG00000016259 ENSPCIG00000012170 ENSPCIG00000012174 ADGRL4 (ENSPCIG00000026590) ENSPCIG00000029745 ENSPCIG00000016330 ENSPCIG00000017625 ##22 ADGRL2 (ENSPCIG00000029600) ENSPCIG00000031116 TTLL7 (ENSPCIG00000006716) PRKACB (ENSPCIG00000013356) SAMD13 (ENSPCIG00000032677) ENSPCIG00000006699 ENSPCIG00000033404 DNASE2B (ENSPCIG00000006696) RPF1 (ENSPCIG00000006692) ENSPCIG00000006687 SPATA1 (ENSPCIG00000006684) CTBS (ENSPCIG00000006682) SSX2IP (ENSPCIG00000006678) LPAR3 (ENSPCIG00000006675) MCOLN2 (ENSPCIG00000006673) Common wonbat MODERN SPECIES 1067 ENSVURG00010017263 INPP5F (ENSVURG00010017282) MCMBP (ENSVURG00010017481) SEC23IP (ENSVURG00010017493) PLPP4 (ENSVURG00010017515) ENSVURG00010017529 WDR11 (ENSVURG00010017552) FGFR2 (ENSVURG00010017618) ATE1 (ENSVURG00010017712) ENSVURG00010017748 ENSVURG00010017780 BTBD16 (ENSVURG00010018157) ENSVURG00010018198 ##22 PLEKHA1 (ENSVURG00010018214) HTRA1 (ENSVURG00010018270) ENSVURG00010018555 ENSVURG00010018628 ENSVURG00010018656 ENSVURG00010018659 CUZD1 (ENSVURG00010018665) C10orf88 (ENSVURG00010018674) ENSVURG00010018686 IKZF5 (ENSVURG00010018688) ACADSB (ENSVURG00010018698) ENSVURG00010018711 GPR26 (ENSVURG00010018721) CPXM2 (ENSVURG00010018730) CHST15 (ENSVURG00010018756) Eutheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Boreoeutheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Laurasiatheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Carnivora ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Caniformia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Caniformia_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Mustelinae ANCESTRAL SPECIES 1 ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.r ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 American mink MODERN SPECIES 27 SAP30BP (ENSNVIG00000011161) SMIM5 (ENSNVIG00000011133) RECQL5 (ENSNVIG00000011059) ENSNVIG00000011041 ENSNVIG00000011005 LLGL2 (ENSNVIG00000010973) TSEN54 (ENSNVIG00000010933) CASKIN2 (ENSNVIG00000010892) TMEM94 (ENSNVIG00000010819) GRB2 (ENSNVIG00000010758) SLC25A19 (ENSNVIG00000010719) MIF4GD (ENSNVIG00000010666) MRPS7 (ENSNVIG00000010616) GGA3 (ENSNVIG00000010547) NUP85 (ENSNVIG00000010508) ENSNVIG00000010480 ##22 JPT1 (ENSNVIG00000010459) NT5C (ENSNVIG00000010431) ARMC7 (ENSNVIG00000010421) SLC16A5 (ENSNVIG00000010408) ENSNVIG00000010396 ENSNVIG00000010388 MRPL58 (ENSNVIG00000010363) CDR2L (ENSNVIG00000010352) HID1 (ENSNVIG00000010335) OTOP3 (ENSNVIG00000010322) OTOP2 (ENSNVIG00000010309) USH1G (ENSNVIG00000010298) FADS6 (ENSNVIG00000010285) FDXR (ENSNVIG00000010113) GRIN2C (ENSNVIG00000010035) Euarchontoglires ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Primates ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Haplorrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Simiiformes ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Catarrhini ANCESTRAL SPECIES 7 ENSGT00940000158396 ENSGT00940000157079.a ENSGT00940000159044 ENSGT00530000063113.C ENSGT00900000143489 ENSGT00390000014165.c.b ENSGT00940000156866 ENSGT00390000007125.b ENSGT00390000014412 ENSGT00940000158996 ENSGT00390000005989.a ENSGT00940000154979.s.a ENSGT00940000154998.a.a ENSGT00640000091672 ENSGT00390000000483.a.a ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 ENSGT00940000159824.c ENSGT00910000146891 ENSGT00940000155857 ENSGT01030000234641.b.a.b.a.b ENSGT00940000158761 ENSGT00950000182938.a ENSGT00940000158129 ENSGT00940000153451.a.a.b ENSGT00390000000537.f.a ENSGT00940000160017 ENSGT00390000003426 ENSGT00910000144291.g ENSGT00940000160186 ENSGT00940000157197 ENSGT00940000158553.b.b Cercopithecidae DUPLICATION Cercopithecidae ANCESTRAL SPECIES 5 ENSGT00940000158396 ENSGT00940000157079.a ENSGT00940000159044 ENSGT00530000063113.C ENSGT00390000014165.c.b.j ENSGT00940000156866 ENSGT00390000007125.b ENSGT00390000014412 ENSGT00940000158996 ENSGT00390000005989.a ENSGT00940000154979.s.a ENSGT00940000154998.a.a ENSGT00640000091672 ENSGT00390000000483.a.a ENSGT00910000147916 ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a.a ##22 ENSGT00940000159824.c ENSGT00910000146891 ENSGT00940000155857 ENSGT01030000234641.b.a.b.a.b ENSGT00940000158761 ENSGT00950000182938.a ENSGT00940000158129 ENSGT00940000153451.a.a.b ENSGT00390000000537.f.a ENSGT00940000160017 ENSGT00390000003426 ENSGT00910000144291.g ENSGT00940000160186 ENSGT00940000157197 ENSGT00940000158553.b.b Cercopithecinae ANCESTRAL SPECIES 233 ENSGT00910000147916 ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a.a ##22 Cercopithecinae_a ANCESTRAL SPECIES 9 ENSGT00940000158396 ENSGT00940000157079.a ENSGT00940000159044 ENSGT00530000063113.C ENSGT00390000014165.c.b.j ENSGT00940000156866 ENSGT00390000007125.b ENSGT00390000014412 ENSGT00940000158996 ENSGT00390000005989.a ENSGT00940000154979.s.a ENSGT00940000154998.a.a ENSGT00640000091672 ENSGT00390000000483.a.a ENSGT00910000147916 ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a.a ##22 ENSGT00940000154276.hb.b ENSGT00940000159824.c ENSGT00910000146891 ENSGT00940000155857 ENSGT01030000234641.b.a.b.a.b ENSGT00940000158761 ENSGT00950000182938.a ENSGT00940000158129 ENSGT00940000153451.a.a.b ENSGT00390000000537.f.a ENSGT00940000160017 ENSGT00390000003426 ENSGT00940000163830 ENSGT00910000144291.g ENSGT00940000160186 Macaca ANCESTRAL SPECIES 7 ENSGT00940000158396 ENSGT00940000157079.a ENSGT00940000159044 ENSGT00530000063113.C ENSGT00390000014165.c.b.i.b ENSGT00940000156866 ENSGT00390000007125.b ENSGT00390000014412 ENSGT00940000158996 ENSGT00390000005989.a ENSGT00940000154979.s.a ENSGT00940000154998.a.a ENSGT00640000091672 ENSGT00390000000483.a.a ENSGT00910000147916 ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a.a ##22 ENSGT00940000154276.hb.b ENSGT00940000159824.c ENSGT00910000146891 ENSGT00940000155857 ENSGT01030000234641.b.a.b.a.b ENSGT00940000158761 ENSGT00950000182938.a ENSGT00940000158129 ENSGT00940000153451.a.a.b ENSGT00390000000537.f.a ENSGT00940000160017 ENSGT00940000163830 ENSGT00910000144291.g ENSGT00940000160186 ENSGT00940000157197 Pig-tailed macaque MODERN SPECIES 566 SH3PXD2B (ENSMNEG00000036165) NEURL1B (ENSMNEG00000044968) DUSP1 (ENSMNEG00000043275) ERGIC1 (ENSMNEG00000031904) RPL26L1 (ENSMNEG00000029899) ATP6V0E1 (ENSMNEG00000036422) CREBRF (ENSMNEG00000032133) BNIP1 (ENSMNEG00000033003) NKX2-5 (ENSMNEG00000016498) STC2 (ENSMNEG00000032109) BOD1 (ENSMNEG00000038516) CPEB4 (ENSMNEG00000034689) C5orf47 (ENSMNEG00000036162) NSG2 (ENSMNEG00000030122) ENSMNEG00000018921 ENSMNEG00000038634 ##22 ENSMNEG00000030903 MSX2 (ENSMNEG00000036098) ENSMNEG00000040948 DRD1 (ENSMNEG00000011662) SFXN1 (ENSMNEG00000043255) HRH2 (ENSMNEG00000039778) CPLX2 (ENSMNEG00000017663) THOC3 (ENSMNEG00000043023) SIMC1 (ENSMNEG00000043696) KIAA1191 (ENSMNEG00000033669) ARL10 (ENSMNEG00000037218) ENSMNEG00000045451 HIGD2A (ENSMNEG00000036123) CLTB (ENSMNEG00000040074) FAF2 (ENSMNEG00000027577) Cercopithecinae_b ANCESTRAL SPECIES 4 ENSGT00940000158396 ENSGT00940000157079.a ENSGT00940000159044 ENSGT00530000063113.C ENSGT00390000014165.c.b.j ENSGT00940000156866 ENSGT00390000007125.b ENSGT00390000014412 ENSGT00940000158996 ENSGT00390000005989.a ENSGT00940000154979.s.a ENSGT00940000154998.a.a ENSGT00640000091672 ENSGT00390000000483.a.a ENSGT00910000147916 ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a.a ##22 ENSGT00940000154276.hb.b ENSGT00940000159824.c ENSGT00910000146891 ENSGT00940000155857 ENSGT01030000234641.b.a.b.a.b ENSGT00940000158761 ENSGT00950000182938.a ENSGT00940000158129 ENSGT00940000166141 ENSGT00940000166337 ENSGT00940000153451.a.a.b ENSGT00390000000537.f.a.a ENSGT00940000160017 ENSGT00390000003426 ENSGT00910000144291.g Cercopithecinae_d ANCESTRAL SPECIES 53 ENSGT00940000158396 ENSGT00940000157079.a ENSGT00940000159044 ENSGT00530000063113.C ENSGT00390000014165.c.b.j ENSGT00940000156866 ENSGT00390000007125.b ENSGT00390000014412 ENSGT00940000158996 ENSGT00390000005989.a ENSGT00940000154979.s.a.d ENSGT00940000154998.a.a ENSGT00640000091672 ENSGT00390000000483.a.a ENSGT00910000147916 ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a.a ##22 ENSGT00940000154276.hb.b ENSGT00940000159824.c ENSGT00910000146891 ENSGT00940000155857 ENSGT01030000234641.b.a.b.a.b ENSGT00940000158761 ENSGT00950000182938.a ENSGT00940000158129 ENSGT00940000166141 ENSGT00940000166337 ENSGT00940000153451.a.a.b ENSGT00390000000537.f.a.a ENSGT00940000160017 ENSGT00940000163830 ENSGT00910000144291.g Drill MODERN SPECIES 1033 CPEB4 (ENSMLEG00000029667) NSG2 (ENSMLEG00000040791) ENSMLEG00000027905 ENSMLEG00000036007 ENSMLEG00000042762 ##22 ENSMLEG00000041358 MSX2 (ENSMLEG00000034278) ENSMLEG00000023595 DRD1 (ENSMLEG00000028356) SFXN1 (ENSMLEG00000041398) HRH2 (ENSMLEG00000034345) CPLX2 (ENSMLEG00000037334) THOC3 (ENSMLEG00000002508) Rhinopithecus ANCESTRAL SPECIES 118 ENSGT00940000158396 ENSGT00940000157079.a ENSGT00940000159044 ENSGT00530000063113.C ENSGT00390000014165.c.b.i.a ENSGT00940000156866 ENSGT00390000007125.b ENSGT00390000014412 ENSGT00940000158996 ENSGT00390000005989.a ENSGT00940000154979.s.a ENSGT00940000154998.a.a ENSGT00640000091672 ENSGT00390000000483.a.a ENSGT00910000147916 ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a.a ##22 ENSGT00940000159824.c Golden snub-nosed monkey MODERN SPECIES 1733 UBTD2 (ENSRROG00000038688) SH3PXD2B (ENSRROG00000038290) NEURL1B (ENSRROG00000043630) DUSP1 (ENSRROG00000027680) ERGIC1 (ENSRROG00000031072) ENSRROG00000034464 ATP6V0E1 (ENSRROG00000035355) CREBRF (ENSRROG00000041689) BNIP1 (ENSRROG00000035092) NKX2-5 (ENSRROG00000043318) STC2 (ENSRROG00000030679) BOD1 (ENSRROG00000039526) CPEB4 (ENSRROG00000029196) NSG2 (ENSRROG00000032380) C5orf47 (ENSRROG00000008119) ENSRROG00000040238 ##22 MSX2 (ENSRROG00000036930) Black snub-nosed monkey MODERN SPECIES 2244 ENSRBIG00000027496 NSG2 (ENSRBIG00000011614) ENSRBIG00000034321 ENSRBIG00000035748 ##22 KLC1 (ENSRBIG00000040035) XRCC3 (ENSRBIG00000031535) ZFYVE21 (ENSRBIG00000032914) PPP1R13B (ENSRBIG00000044989) ATP5MJ (ENSRBIG00000039283) RD3L (ENSRBIG00000039742) TDRD9 (ENSRBIG00000040614) ASPG (ENSRBIG00000042436) KIF26A (ENSRBIG00000036050) C14orf180 (ENSRBIG00000028248) ENSRBIG00000032131 TMEM179 (ENSRBIG00000011297) ENSRBIG00000035515 ENSRBIG00000040515 ENSRBIG00000043900 Cercopithecidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a.b ##22 Rhinopithecus ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a.b ##22 Black snub-nosed monkey MODERN SPECIES 1015 BDP1 (ENSRBIG00000042329) SERF1B (ENSRBIG00000044524) ENSRBIG00000037052 NAIP (ENSRBIG00000035489) ENSRBIG00000043303 OCLN (ENSRBIG00000000772) MARVELD2 (ENSRBIG00000038179) RAD17 (ENSRBIG00000043552) ENSRBIG00000034939 CCDC125 (ENSRBIG00000011189) CDK7 (ENSRBIG00000029386) ENSRBIG00000004514 CENPH (ENSRBIG00000042490) CCNB1 (ENSRBIG00000031625) SLC30A5 (ENSRBIG00000039754) ENSRBIG00000030902 ##22 PIK3R1 (ENSRBIG00000007670) Hominoidea ANCESTRAL SPECIES 8 ENSGT00940000158396 ENSGT00940000157079.a ENSGT00940000159044 ENSGT00530000063113.C ENSGT00900000143489 ENSGT00390000014165.c.b ENSGT00940000156866 ENSGT00390000007125.b ENSGT00390000014412 ENSGT00940000158996 ENSGT00390000005989.a ENSGT00940000154979.s.a ENSGT00940000154998.a.a ENSGT00640000091672 ENSGT00390000000483.a.a ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 ENSGT00940000159824.c ENSGT00910000146891 ENSGT00940000155857 ENSGT01030000234641.b.a.b.a.b ENSGT00940000158761 ENSGT00950000182938.a ENSGT00940000158129 ENSGT00940000153451.a.a.b ENSGT00390000000537.f.a ENSGT00940000160017 ENSGT00390000003426 ENSGT00910000144291.g ENSGT00940000160186 ENSGT00940000157197 ENSGT00940000158553.b.b Hominidae ANCESTRAL SPECIES 7 ENSGT00940000155445.e.a.a ENSGT00940000159044 ENSGT00530000063113.C ENSGT00900000143489 ENSGT00390000014165.c.b ENSGT00390000017004.a.b.m.a.b ENSGT00940000156866 ENSGT00390000007125.b ENSGT00390000014412 ENSGT00940000158996 ENSGT00390000005989.a ENSGT00940000154979.s.a ENSGT00940000154998.a.a ENSGT00640000091672 ENSGT00390000000483.a.a ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 ENSGT00940000159824.c ENSGT00910000146891 ENSGT00940000155857 ENSGT01030000234641.b.a.b.a.b ENSGT00940000158761 ENSGT00950000182938.a ENSGT00940000158129 ENSGT00940000153451.a.a.b ENSGT00390000000537.f.a ENSGT00940000160017 ENSGT00390000003426 ENSGT00910000144291.g.a ENSGT00940000160186 ENSGT00940000157197 ENSGT00940000158553.b.b Orangutan MODERN SPECIES 18 NEURL1B (ENSPPYG00000016046) ENSPPYG00000016047 DUSP1 (ENSPPYG00000016048) ERGIC1 (ENSPPYG00000016049) RPL26L1 (ENSPPYG00000025929) ENSPPYG00000016051 ATP6V0E1 (ENSPPYG00000039284) CREBRF (ENSPPYG00000016053) BNIP1 (ENSPPYG00000016054) ENSPPYG00000039258 STC2 (ENSPPYG00000031955) ENSPPYG00000016057 ENSPPYG00000031520 C5orf47 (ENSPPYG00000016059) NSG2 (ENSPPYG00000016060) ENSPPYG00000038848 ##22 MSX2 (ENSPPYG00000016061) DRD1 (ENSPPYG00000016062) SFXN1 (ENSPPYG00000016063) HRH2 (ENSPPYG00000016150) CPLX2 (ENSPPYG00000016064) THOC3 (ENSPPYG00000016066) B4GALT7 (ENSPPYG00000038147) TMED9 (ENSPPYG00000033004) FAM193B (ENSPPYG00000016098) DDX41 (ENSPPYG00000016097) DOK3 (ENSPPYG00000016096) PDLIM7 (ENSPPYG00000016095) DBN1 (ENSPPYG00000016094) PRR7 (ENSPPYG00000016093) GRK6 (ENSPPYG00000016092) Euarchontoglires_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Glires ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Rodentia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Rodentia_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Myomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Muroidea ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Muroidea_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Cricetidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Cricetidae_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Prairie vole MODERN SPECIES Tnfsf10 (ENSMOCG00000001683) Nceh1 (ENSMOCG00000021848) Ect2 (ENSMOCG00000016900) Spata16 (ENSMOCG00000014167) Nlgn1 (ENSMOCG00000006420) Tbl1xr1 (ENSMOCG00000022629) ENSMOCG00000006252 ENSMOCG00000007296 Cpb1 (ENSMOCG00000020527) Cpa3 (ENSMOCG00000020637) Gyg (ENSMOCG00000013677) Hltf (ENSMOCG00000019747) Hps3 (ENSMOCG00000010766) Cp (ENSMOCG00000016138) ENSMOCG00000019158 ENSMOCG00000017600 ##22 Lamb1 (ENSMOCG00000014282) Dld (ENSMOCG00000021009) Slc26a3 (ENSMOCG00000019595) Cbll1 (ENSMOCG00000016689) Slc26a4 (ENSMOCG00000022260) Bcap29 (ENSMOCG00000002261) Dus4l (ENSMOCG00000019344) ENSMOCG00000005050 Gpr22 (ENSMOCG00000002304) ENSMOCG00000000934 Cog5 (ENSMOCG00000009102) Hbp1 (ENSMOCG00000019227) Prkar2b (ENSMOCG00000013480) Pik3cg (ENSMOCG00000007687) Nampt (ENSMOCG00000007931) Rodentia_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Hystricomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Naked mole-rat female MODERN SPECIES 26 GK2 (ENSHGLG00000004055) ENSHGLG00000040025 NAA11 (ENSHGLG00000004240) ENSHGLG00000004308 ENSHGLG00000004648 ANXA3 (ENSHGLG00000005040) ENSHGLG00000005415 ENSHGLG00000049854 ENSHGLG00000013760 ENSHGLG00000045804 ENSHGLG00000008980 ENSHGLG00000013357 ENSHGLG00000015705 BMPR1B (ENSHGLG00000008496) ENSHGLG00000035615 ENSHGLG00000033607 ##22 ENSHGLG00000006128 ENSHGLG00000032448 ENSHGLG00000048563 HPGDS (ENSHGLG00000039097) ENSHGLG00000005070 ENSHGLG00000037196 ENSHGLG00000033791 ENSHGLG00000020623 GRID2 (ENSHGLG00000004059) ENSHGLG00000037793 ENSHGLG00000048185 ENSHGLG00000037139 CCSER1 (ENSHGLG00000003812) ENSHGLG00000003688 MMRN1 (ENSHGLG00000003604) Hystricomorpha_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Hystricomorpha_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.a ##22 Degu MODERN SPECIES 144 BRWD3 (ENSODEG00000003272) SH3BGRL (ENSODEG00000003326) ENSODEG00000003422 ENSODEG00000003430 POU3F4 (ENSODEG00000019055) RPS6KA6 (ENSODEG00000003590) HDX (ENSODEG00000000832) ENSODEG00000000866 APOOL (ENSODEG00000000970) ENSODEG00000000990 ENSODEG00000001004 ZNF711 (ENSODEG00000001046) POF1B (ENSODEG00000001140) ENSODEG00000001180 CHM (ENSODEG00000001208) ENSODEG00000018560 ##22 DACH2 (ENSODEG00000000554) ENSODEG00000000657 ENSODEG00000000679 KLHL4 (ENSODEG00000000734) ENSODEG00000000810 ENSODEG00000000827 ENSODEG00000000850 ENSODEG00000000697 Theria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.b ##22 Eutheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.b ##22 Boreoeutheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.b ##22 Euarchontoglires ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.b ##22 Primates ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.b ##22 Haplorrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.b ##22 Simiiformes ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.b ##22 Catarrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.b ##22 Cercopithecidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.b ##22 Cercopithecinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.b ##22 Cercopithecinae_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.b ##22 Cercopithecinae_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.b ##22 Cercopithecinae_d ANCESTRAL SPECIES 100 ENSGT00390000012336 ENSGT00550000074781 ENSGT00940000160291 ENSGT00390000008240.n ENSGT00390000008240.m ENSGT00940000161792 ENSGT00940000159452 ENSGT00390000011613 ENSGT00940000160700 ENSGT00390000009277 ENSGT00940000157545 ENSGT00510000047812 ENSGT00910000147356 ENSGT00390000019406 ENSGT00940000164915.a ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.b ##22 ENSGT00940000159303 ENSGT01030000234532.A.b ENSGT00940000157397 ENSGT00940000154412.B.b ENSGT00940000158030 ENSGT00390000018390.jc ENSGT00950000183158.D.b.f ENSGT00950000182870.b ENSGT00950000182870.a.b.l ENSGT00490000043356.a ENSGT00530000063301.a.b ENSGT00950000183187.A ENSGT00940000157722.d ENSGT00940000159843.h ENSGT00940000162699 Sooty mangabey MODERN SPECIES 130 SORD (ENSCATG00000040485) ENSCATG00000013184 DUOX2 (ENSCATG00000039528) DUOXA2 (ENSCATG00000035189) DUOXA1 (ENSCATG00000044890) DUOX1 (ENSCATG00000038120) SHF (ENSCATG00000035533) GATM (ENSCATG00000011938) SPATA5L1 (ENSCATG00000033763) ENSCATG00000037581 SLC30A4 (ENSCATG00000031840) BLOC1S6 (ENSCATG00000040072) ENSCATG00000005595 SQOR (ENSCATG00000036772) ENSCATG00000021652 ENSCATG00000038489 ##22 SEMA6D (ENSCATG00000039652) SLC24A5 (ENSCATG00000041136) MYEF2 (ENSCATG00000039268) CTXN2 (ENSCATG00000019704) SLC12A1 (ENSCATG00000041847) ENSCATG00000038736 FBN1 (ENSCATG00000019781) CEP152 (ENSCATG00000014580) SHC4 (ENSCATG00000039953) SECISBP2L (ENSCATG00000033967) COPS2 (ENSCATG00000029862) GALK2 (ENSCATG00000034152) FAM227B (ENSCATG00000029979) ENSCATG00000039047 FGF7 (ENSCATG00000043126) Drill MODERN SPECIES 1658 ENSMLEG00000028147 ENSMLEG00000030863 ##22 Macaca ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.b ##22 Pig-tailed macaque MODERN SPECIES 306 PAICS (ENSMNEG00000044037) ENSMNEG00000038065 ARL9 (ENSMNEG00000042244) THEGL (ENSMNEG00000029009) HOPX (ENSMNEG00000037886) SPINK2 (ENSMNEG00000034333) REST (ENSMNEG00000040064) NOA1 (ENSMNEG00000033975) POLR2B (ENSMNEG00000041844) IGFBP7 (ENSMNEG00000045498) ENSMNEG00000003539 ADGRL3 (ENSMNEG00000030419) ENSMNEG00000027169 TECRL (ENSMNEG00000039810) EPHA5 (ENSMNEG00000013078) ENSMNEG00000015557 ##22 CENPC (ENSMNEG00000038222) STAP1 (ENSMNEG00000028890) UBA6 (ENSMNEG00000031168) GNRHR (ENSMNEG00000044818) TMPRSS11D (ENSMNEG00000035627) TMPRSS11A (ENSMNEG00000042431) TMPRSS11F (ENSMNEG00000005324) TMPRSS11B (ENSMNEG00000034439) ENSMNEG00000033805 YTHDC1 (ENSMNEG00000033751) ENSMNEG00000034123 TMPRSS11E (ENSMNEG00000038930) ENSMNEG00000044705 ENSMNEG00000036366 ENSMNEG00000033562 Euarchontoglires_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.b ##22 Glires ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.b ##22 Rodentia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.b ##22 Rodentia_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.b ##22 Hystricomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.b ##22 Naked mole-rat female MODERN SPECIES 13 LRRCC1 (ENSHGLG00000007603) ENSHGLG00000005836 ENSHGLG00000049225 CA13 (ENSHGLG00000010003) ENSHGLG00000043682 CA1 (ENSHGLG00000008038) CA3 (ENSHGLG00000034708) CA2 (ENSHGLG00000005638) ENSHGLG00000002610 PSKH2 (ENSHGLG00000005049) ATP6V0D2 (ENSHGLG00000014042) SLC7A13 (ENSHGLG00000013058) ENSHGLG00000021351 ENSHGLG00000016454 RMDN1 (ENSHGLG00000018375) ENSHGLG00000021216 ##22 ENSHGLG00000016017 CNGB3 (ENSHGLG00000018352) ENSHGLG00000015426 ENSHGLG00000030768 ENSHGLG00000010724 ENSHGLG00000032446 ENSHGLG00000034863 ENSHGLG00000046598 RIPK2 (ENSHGLG00000009528) ENSHGLG00000050184 OSGIN2 (ENSHGLG00000039904) NBN (ENSHGLG00000009487) ENSHGLG00000007466 CALB1 (ENSHGLG00000046879) ENSHGLG00000050098 Marsupialia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.b ##22 Marsupialia_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.b ##22 Diprotodontia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.b ##22 Diprotodontia_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.a.b ##22 Common wonbat DUPLICATION Common wonbat MODERN SPECIES 670 ENSVURG00010012457 ENSVURG00010012464 ##22 Common wonbat MODERN SPECIES 671 ENSVURG00010012471 ENSVURG00010012487 ##22 Theria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Marsupialia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Opossum MODERN SPECIES 5 EMP2 (ENSMODG00000038065) ENSMODG00000044837 ENSMODG00000005286 GRIN2A (ENSMODG00000005363) ENSMODG00000039411 HAPSTR1 (ENSMODG00000005378) USP7 (ENSMODG00000005702) ENSMODG00000042650 ENSMODG00000049451 ENSMODG00000005737 TMEM186 (ENSMODG00000005744) ABAT (ENSMODG00000005781) METTL22 (ENSMODG00000005792) TMEM114 (ENSMODG00000005797) ENSMODG00000027367 ENSMODG00000024767 ##22 RBFOX1 (ENSMODG00000005826) ENSMODG00000005839 ENSMODG00000005853 ENSMODG00000005862 NAGPA (ENSMODG00000005871) C16orf89 (ENSMODG00000005894) ENSMODG00000005925 SEC14L5 (ENSMODG00000005977) PPL (ENSMODG00000006040) UBN1 (ENSMODG00000006072) GLYR1 (ENSMODG00000006140) ROGDI (ENSMODG00000006182) SMIM22 (ENSMODG00000050809) SEPTIN12 (ENSMODG00000006197) ENSMODG00000006211 Eutheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Atlantogenata ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Afrotheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Tenrec MODERN SPECIES 15020 ENSETEG00000014984 ##22 Boreoeutheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Laurasiatheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Laurasiatheria_c ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Chiroptera ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Microchiroptera ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Microbat DUPLICATION Microbat MODERN SPECIES 999 ENSMLUG00000011641 RHOBTB1 (ENSMLUG00000011650) TMEM26 (ENSMLUG00000005446) ENSMLUG00000028502 ENSMLUG00000013443 ARID5B (ENSMLUG00000013447) RTKN2 (ENSMLUG00000013452) ZNF365 (ENSMLUG00000013458) ADO (ENSMLUG00000001506) NRBF2 (ENSMLUG00000001657) JMJD1C (ENSMLUG00000025318) REEP3 (ENSMLUG00000012958) ENSMLUG00000025764 ENSMLUG00000005829 ENSMLUG00000011867 ENSMLUG00000008149 ##22 LRRTM3 (ENSMLUG00000011887) ENSMLUG00000025662 ENSMLUG00000012846 ENSMLUG00000024093 ENSMLUG00000023509 DNAJC12 (ENSMLUG00000007162) SIRT1 (ENSMLUG00000004285) HERC4 (ENSMLUG00000004291) MYPN (ENSMLUG00000012496) PBLD (ENSMLUG00000000140) HNRNPH3 (ENSMLUG00000000143) RUFY2 (ENSMLUG00000000150) ENSMLUG00000015224 Microbat MODERN SPECIES 964 FER1L6 (ENSMLUG00000006536) TMEM65 (ENSMLUG00000003750) TRMT12 (ENSMLUG00000003753) RNF139 (ENSMLUG00000026526) TATDN1 (ENSMLUG00000003759) NDUFB9 (ENSMLUG00000003765) MTSS1 (ENSMLUG00000003769) ZNF572 (ENSMLUG00000000608) SQLE (ENSMLUG00000000613) WASHC5 (ENSMLUG00000000620) NSMCE2 (ENSMLUG00000000640) TRIB1 (ENSMLUG00000013820) SNAI2 (ENSMLUG00000001086) CLXN (ENSMLUG00000007204) ENSMLUG00000006521 ENSMLUG00000029259 ##22 ENSMLUG00000002057 ENSMLUG00000030428 ENSMLUG00000029773 MCM4 (ENSMLUG00000004327) ENSMLUG00000028414 PRKDC (ENSMLUG00000000718) ENSMLUG00000002485 PKIA (ENSMLUG00000026688) ZC2HC1A (ENSMLUG00000002353) IL7 (ENSMLUG00000002361) ENSMLUG00000026615 STMN2 (ENSMLUG00000015618) HEY1 (ENSMLUG00000009035) MRPS28 (ENSMLUG00000015175) TPD52 (ENSMLUG00000015181) Greater horseshoe bat MODERN SPECIES 13 RFFL (ENSRFEG00010020407) LIG3 (ENSRFEG00010020352) ZNF830 (ENSRFEG00010020329) CCT6B (ENSRFEG00010020082) TMEM132E (ENSRFEG00010019902) CCL8 (ENSRFEG00010019872) CCL2 (ENSRFEG00010019809) ENSRFEG00010019773 ASIC2 (ENSRFEG00010019642) SPACA3 (ENSRFEG00010019589) TMEM98 (ENSRFEG00010019564) ENSRFEG00010019534 MYO1D (ENSRFEG00010019451) CDK5R1 (ENSRFEG00010019423) PSMD11 (ENSRFEG00010019338) ENSRFEG00010019307 ##22 ZNF207 (ENSRFEG00010019158) ENSRFEG00010019127 C17orf75 (ENSRFEG00010019104) RHBDL3 (ENSRFEG00010019014) RHOT1 (ENSRFEG00010018815) RNF135 (ENSRFEG00010018686) ADAP2 (ENSRFEG00010018637) TEFM (ENSRFEG00010018619) ATAD5 (ENSRFEG00010018233) CRLF3 (ENSRFEG00010018133) SUZ12 (ENSRFEG00010018041) UTP6 (ENSRFEG00010017972) COPRS (ENSRFEG00010017903) ENSRFEG00010017847 ENSRFEG00010017808 Carnivora ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Caniformia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Canidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Red fox MODERN SPECIES 153 RNF150 (ENSVVUG00000021359) TBC1D9 (ENSVVUG00000021364) UCP1 (ENSVVUG00000021376) ELMOD2 (ENSVVUG00000021382) MGAT4D (ENSVVUG00000021390) CLGN (ENSVVUG00000021399) ENSVVUG00000021420 ENSVVUG00000021428 MGST2 (ENSVVUG00000021431) SETD7 (ENSVVUG00000021437) RAB33B (ENSVVUG00000021440) NAA15 (ENSVVUG00000021442) ENSVVUG00000021447 ELF2 (ENSVVUG00000021452) NOCT (ENSVVUG00000021461) ENSVVUG00000021476 ##22 ENSVVUG00000021478 ENSVVUG00000021484 SLC7A11 (ENSVVUG00000021487) ENSVVUG00000021488 PCDH18 (ENSVVUG00000021489) Caniformia_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Mustelinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 American mink MODERN SPECIES 112 RASGRF2 (ENSNVIG00000000915) ENSNVIG00000000947 MSH3 (ENSNVIG00000000962) ENSNVIG00000001739 AN34B (ENSNVIG00000001804) F151B (ENSNVIG00000001809) ZFYVE16 (ENSNVIG00000001838) SPZ1 (ENSNVIG00000001867) SERINC5 (ENSNVIG00000001875) THBS4 (ENSNVIG00000001935) MTX3 (ENSNVIG00000002002) CMYA5 (ENSNVIG00000002033) TENT2 (ENSNVIG00000002064) HOMER1 (ENSNVIG00000002206) JMY (ENSNVIG00000002287) ENSNVIG00000002323 ##22 BHMT (ENSNVIG00000002335) DMGDH (ENSNVIG00000002369) ARSB (ENSNVIG00000002402) LHPL2 (ENSNVIG00000002454) SCAMP1 (ENSNVIG00000002476) AP3B1 (ENSNVIG00000002504) ENSNVIG00000002585 TBCA (ENSNVIG00000002606) OTP (ENSNVIG00000002637) WDR41 (ENSNVIG00000002651) ENSNVIG00000002723 ZBED3 (ENSNVIG00000002773) AGGF1 (ENSNVIG00000002783) CRHBP (ENSNVIG00000002829) F2RL1 (ENSNVIG00000002854) Euarchontoglires ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Euarchontoglires_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Tree shrew MODERN SPECIES 6947 ENSTBEG00000012787 ##22 Glires ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Lagomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Rabbit MODERN SPECIES 8 DUOX1 (ENSOCUG00000014307) ENSOCUG00000014332 SLC28A2 (ENSOCUG00000014340) GATM (ENSOCUG00000014352) SPATA5L1 (ENSOCUG00000011209) ENSOCUG00000029216 ENSOCUG00000037926 SLC30A4 (ENSOCUG00000013313) ENSOCUG00000030326 BLOC1S6 (ENSOCUG00000017351) SQOR (ENSOCUG00000014347) ENSOCUG00000030558 ENSOCUG00000032462 ENSOCUG00000035692 SEMA6D (ENSOCUG00000007901) ENSOCUG00000021707 ##22 ENSOCUG00000031757 SLC24A5 (ENSOCUG00000013038) MYEF2 (ENSOCUG00000013043) CTXN2 (ENSOCUG00000026367) SLC12A1 (ENSOCUG00000016508) ENSOCUG00000003862 FBN1 (ENSOCUG00000003866) CEP152 (ENSOCUG00000006424) EID1 (ENSOCUG00000025492) SHC4 (ENSOCUG00000006438) SECISBP2L (ENSOCUG00000006443) COPS2 (ENSOCUG00000006455) ENSOCUG00000036138 GALK2 (ENSOCUG00000006461) FGF7 (ENSOCUG00000006713) Rodentia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Rodentia_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Hystricomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Naked mole-rat female MODERN SPECIES 27 ENSHGLG00000043660 ENSHGLG00000011335 ENSHGLG00000039177 ELP6 (ENSHGLG00000049720) CSPG5 (ENSHGLG00000016793) SMARCC1 (ENSHGLG00000013300) ENSHGLG00000042510 DHX30 (ENSHGLG00000012643) MAP4 (ENSHGLG00000039957) ENSHGLG00000037757 ENSHGLG00000012040 CDC25A (ENSHGLG00000011750) ENSHGLG00000011422 ENSHGLG00000037308 ENSHGLG00000042646 ENSHGLG00000049353 ##22 ENSHGLG00000016738 ENSHGLG00000032671 ENSHGLG00000016720 ENSHGLG00000016779 ENSHGLG00000046654 ENSHGLG00000014640 ENSHGLG00000016655 ENSHGLG00000016757 ENSHGLG00000042633 ENSHGLG00000016744 #32 ENSHGLG00000019330 #33 MAP6D1 (ENSHGLG00000033592) #34 PARL (ENSHGLG00000017341) #35 ABCC5 (ENSHGLG00000017333) ENSHGLG00000042584 Sciuridae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Marmotini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Marmotini_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Arctic ground squirrel MODERN SPECIES 3 GTDC1 (ENSUPAG00010004826) ZEB2 (ENSUPAG00010004644) ENSUPAG00010004608 ACVR2A (ENSUPAG00010004582) ORC4 (ENSUPAG00010004557) MBD5 (ENSUPAG00010004537) ENSUPAG00010004533 ENSUPAG00010004532 EPC2 (ENSUPAG00010004529) KIF5C (ENSUPAG00010004496) LYPD6B (ENSUPAG00010004479) LYPD6 (ENSUPAG00010004464) MMADHC (ENSUPAG00010004432) RND3 (ENSUPAG00010004413) ENSUPAG00010004396 ENSUPAG00010004388 ##22 RBM43 (ENSUPAG00010004382) NMI (ENSUPAG00010004358) TNFAIP6 (ENSUPAG00010004346) RIF1 (ENSUPAG00010002377) NEB (ENSUPAG00010001764) ENSUPAG00010001737 CACNB4 (ENSUPAG00010001584) ENSUPAG00010001568 STAM2 (ENSUPAG00010001468) FMNL2 (ENSUPAG00010000658) PRPF40A (ENSUPAG00010000254) ARL6IP6 (ENSUPAG00010000239) Rodentia_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Myomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Lesser Egyptian jerboa MODERN SPECIES 56 Sap30bp (ENSJJAG00000009591) Smim5 (ENSJJAG00000009604) Recql5 (ENSJJAG00000012288) ENSJJAG00000012122 ENSJJAG00000009471 Llgl2 (ENSJJAG00000011867) Tsen54 (ENSJJAG00000007365) ENSJJAG00000008389 Tmem94 (ENSJJAG00000009897) Grb2 (ENSJJAG00000010996) Slc25a19 (ENSJJAG00000008643) Mif4gd (ENSJJAG00000023204) Mrps7 (ENSJJAG00000012105) Gga3 (ENSJJAG00000010123) Nup85 (ENSJJAG00000000528) ENSJJAG00000023085 ##22 Jpt1 (ENSJJAG00000014345) Nt5c (ENSJJAG00000022567) Armc7 (ENSJJAG00000011046) Slc16a5 (ENSJJAG00000022921) Trim80 (ENSJJAG00000010267) Kctd2 (ENSJJAG00000021590) ENSJJAG00000003793 Mrpl58 (ENSJJAG00000000722) Cdr2l (ENSJJAG00000003753) Hid1 (ENSJJAG00000012842) Otop3 (ENSJJAG00000003163) Otop2 (ENSJJAG00000019228) Ush1g (ENSJJAG00000018705) Fads6 (ENSJJAG00000009020) ENSJJAG00000022983 Muroidea ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Upper Galilee mountains blind mole rat MODERN SPECIES 1011 ENSNGAG00000000663 Cers6 (ENSNGAG00000000371) Nostrin (ENSNGAG00000020161) Spc25 (ENSNGAG00000019235) G6pc2 (ENSNGAG00000018312) Abcb11 (ENSNGAG00000014534) Dhrs9 (ENSNGAG00000011696) Lrp2 (ENSNGAG00000011151) ENSNGAG00000015265 ##22 Bbs5 (ENSNGAG00000014871) Klhl41 (ENSNGAG00000014053) Fastkd1 (ENSNGAG00000013543) Ppig (ENSNGAG00000012335) Ccdc173 (ENSNGAG00000011382) Phospho2 (ENSNGAG00000010570) Klhl23 (ENSNGAG00000013310) ENSNGAG00000012920 ENSNGAG00000012423 Ubr3 (ENSNGAG00000013182) Muroidea_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Cricetidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Cricetinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Chinese hamster chok1gshd MODERN SPECIES 92 Camk4 (ENSCGRG00001023370) Wdr36 (ENSCGRG00001012983) Tslp (ENSCGRG00001021100) ENSCGRG00001017223 Gypc (ENSCGRG00001018165) Tex51 (ENSCGRG00001013935) Bin1 (ENSCGRG00001011144) ENSCGRG00001014011 Ercc3 (ENSCGRG00001009426) Map3k2 (ENSCGRG00001024310) ENSCGRG00001015467 Iws1 (ENSCGRG00001009366) Myo7b (ENSCGRG00001013761) Gpr17 (ENSCGRG00001003113) Lims2 (ENSCGRG00001024065) ENSCGRG00001000872 ##22 Sft2d3 (ENSCGRG00001018784) Wdr33 (ENSCGRG00001018500) Polr2d (ENSCGRG00001013608) Ammecr1l (ENSCGRG00001015916) Sap130 (ENSCGRG00001007656) ENSCGRG00001010765 ENSCGRG00001009399 Slc25a46 (ENSCGRG00001020573) Syt4 (ENSCGRG00001014925) Rit2 (ENSCGRG00001005747) Pik3c3 (ENSCGRG00001012349) ENSCGRG00001023989 ENSCGRG00001018958 ENSCGRG00001014391 Celf4 (ENSCGRG00001018085) Golden Hamster MODERN SPECIES 637 Sap30bp (ENSMAUG00000021680) Recql5 (ENSMAUG00000017594) Smim6 (ENSMAUG00000012003) ENSMAUG00000017715 ENSMAUG00000014909 Llgl2 (ENSMAUG00000015309) Tsen54 (ENSMAUG00000016838) ENSMAUG00000015366 Tmem94 (ENSMAUG00000018154) Grb2 (ENSMAUG00000016953) ENSMAUG00000018531 Mif4gd (ENSMAUG00000021885) Mrps7 (ENSMAUG00000015115) ENSMAUG00000015579 Nup85 (ENSMAUG00000020536) ENSMAUG00000017838 ##22 Jpt1 (ENSMAUG00000019815) Nt5c (ENSMAUG00000015203) Armc7 (ENSMAUG00000016796) Slc16a5 (ENSMAUG00000016968) Mrpl58 (ENSMAUG00000014528) Cdr2l (ENSMAUG00000017561) Hid1 (ENSMAUG00000020775) ENSMAUG00000016870 Otop2 (ENSMAUG00000015917) Ush1g (ENSMAUG00000016857) Fads6 (ENSMAUG00000018235) ENSMAUG00000019201 Grin2c (ENSMAUG00000019504) Tmem104 (ENSMAUG00000019547) Nat9 (ENSMAUG00000020329) Primates ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Haplorrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Tarsier MODERN SPECIES 4089 HAS2 (ENSTSYG00000032214) ENSTSYG00000028500 ##22 Simiiformes ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Catarrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Hominoidea ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Hominidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Homo/Pan/Gorilla group ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Homo/Pan group ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Pan ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Bonobo MODERN SPECIES 8 SMIM6 (ENSPPAG00000006693) SMIM5 (ENSPPAG00000035228) RECQL5 (ENSPPAG00000034423) MYO15B (ENSPPAG00000025068) LLGL2 (ENSPPAG00000028840) TSEN54 (ENSPPAG00000043519) CASKIN2 (ENSPPAG00000033859) TMEM94 (ENSPPAG00000043879) ENSPPAG00000000113 GRB2 (ENSPPAG00000028137) SLC25A19 (ENSPPAG00000036265) MIF4GD (ENSPPAG00000019610) MRPS7 (ENSPPAG00000022323) GGA3 (ENSPPAG00000029395) NUP85 (ENSPPAG00000017632) ENSPPAG00000028083 ##22 ENSPPAG00000029399 ENSPPAG00000032713 ARMC7 (ENSPPAG00000043980) SLC16A5 (ENSPPAG00000030400) ENSPPAG00000040939 ENSPPAG00000037086 ATP5PD (ENSPPAG00000036543) MRPL58 (ENSPPAG00000032239) CDR2L (ENSPPAG00000040824) HID1 (ENSPPAG00000043929) OTOP3 (ENSPPAG00000030267) OTOP2 (ENSPPAG00000043489) USH1G (ENSPPAG00000039316) FADS6 (ENSPPAG00000030189) FDXR (ENSPPAG00000036540) Cercopithecidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Rhinopithecus ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Black snub-nosed monkey MODERN SPECIES 651 SEMA3C (ENSRBIG00000038000) CD36 (ENSRBIG00000028862) GNAT3 (ENSRBIG00000029649) GNAI1 (ENSRBIG00000031401) ENSRBIG00000021799 ##22 ENSRBIG00000041960 ENSRBIG00000020561 MAGI2 (ENSRBIG00000022243) PHTF2 (ENSRBIG00000041715) TMEM60 (ENSRBIG00000004732) RSBN1L (ENSRBIG00000040399) ENSRBIG00000006205 PTPN12 (ENSRBIG00000032459) ENSRBIG00000007326 ATG4A (ENSRBIG00000037493) ENSRBIG00000032784 ENSRBIG00000022951 Platyrrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Cebidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Cebidae_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.a.b.b.b ##22 Capuchin MODERN SPECIES 83 HNRNPC (ENSCCAG00000025125) TMEM253 (ENSCCAG00000030528) ZNF219 (ENSCCAG00000033414) ARHGEF40 (ENSCCAG00000032878) NDRG2 (ENSCCAG00000028069) TPPP2 (ENSCCAG00000037921) SLC39A2 (ENSCCAG00000028665) METTL17 (ENSCCAG00000035947) ENSCCAG00000008336 DAAM1 (ENSCCAG00000020704) ENSCCAG00000033210 ##22 L3HYPDH (ENSCCAG00000016249) JKAMP (ENSCCAG00000034168) CCDC175 (ENSCCAG00000029109) RTN1 (ENSCCAG00000029137) LRRC9 (ENSCCAG00000027847) PCNX4 (ENSCCAG00000031427) DHRS7 (ENSCCAG00000025684) PPM1A (ENSCCAG00000023707) C14orf39 (ENSCCAG00000033742) SIX6 (ENSCCAG00000034242) SIX1 (ENSCCAG00000021734) SIX4 (ENSCCAG00000022445) MNAT1 (ENSCCAG00000034022) TRMT5 (ENSCCAG00000037835) SLC38A6 (ENSCCAG00000035278) Theria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.b ##22 Eutheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.b ##22 Boreoeutheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.b ##22 Laurasiatheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.b ##22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.b ##22 Artiodactyla ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.b ##22 Artiodactyla_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.b ##22 Artiodactyla_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.b ##22 Pecora ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.b ##22 Percora_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.b ##22 Bovidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.b ##22 Bovinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.b ##22 Bos ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.b ##22 Bos_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.a.b.b ##22 Domestic yak MODERN SPECIES 69 ENSBGRG00000012610 ENSBGRG00000012647 SLITRK2 (ENSBGRG00000012655) ENSBGRG00000012673 ENSBGRG00000012699 SLITRK4 (ENSBGRG00000012800) ENSBGRG00000012828 ENSBGRG00000012864 ENSBGRG00000012915 LDOC1 (ENSBGRG00000012930) ENSBGRG00000013037 SOX3 (ENSBGRG00000013074) ENSBGRG00000013322 ENSBGRG00000013335 ENSBGRG00000013390 ENSBGRG00000013454 ##22 ATP11C (ENSBGRG00000013594) MCF2 (ENSBGRG00000016309) F9 (ENSBGRG00000017397) FGF13 (ENSBGRG00000017651) ENSBGRG00000017892 ENSBGRG00000017943 ENSBGRG00000017990 ENSBGRG00000018033 ZIC3 (ENSBGRG00000018094) ENSBGRG00000018234 GPR101 (ENSBGRG00000018481) RBMXL1 (ENSBGRG00000018516) ARHGEF6 (ENSBGRG00000018751) CD40LG (ENSBGRG00000019129) ENSBGRG00000019321 Amniota ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Mammalia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Theria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Eutheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Boreoeutheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Laurasiatheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Artiodactyla ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Artiodactyla_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Artiodactyla_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Cetacea ANCESTRAL SPECIES 20 ENSGT00390000017860.a.b ENSGT00530000063872.B ENSGT00940000171241.b ENSGT00940000155756 ENSGT00940000159395 ENSGT00390000010065 ENSGT00390000015700.a ENSGT00940000161074.a ENSGT00950000183159.b ENSGT00940000154925.g ENSGT00390000018369 ENSGT00940000158486 ENSGT00940000158108 ENSGT00950000183087.A.b.b.i.b ENSGT00940000156711 ENSGT00950000182895.a.a.a.a.a.b ##22 ENSGT00950000182994.B.a.b.e.a.a ENSGT00390000015293 ENSGT00530000063106.C ENSGT00390000013790 ENSGT00390000005954.u ENSGT00390000001134.a.a ENSGT00940000160425 ENSGT00940000155079.b ENSGT00940000156743 ENSGT01030000238532 ENSGT00940000155487 ENSGT00940000157767 ENSGT00900000143708 ENSGT00940000156894 ENSGT00940000155454 Odontoceti ANCESTRAL SPECIES 21 ENSGT00390000017860.a.b ENSGT00530000063872.B ENSGT00940000171241.b ENSGT00940000155756 ENSGT00940000159395 ENSGT00390000010065 ENSGT00390000015700.a ENSGT00940000161074.a ENSGT00950000183159.b ENSGT00940000154925.g ENSGT00390000018369 ENSGT00940000158486 ENSGT00940000158108 ENSGT00950000183087.A.b.b.i.b ENSGT00940000156711 ENSGT00950000182895.a.a.a.a.a.b ##22 ENSGT00950000182994.B.a.b.e.a.a ENSGT00390000015293 ENSGT00530000063106.C ENSGT00390000013790 ENSGT00390000005954.u ENSGT00390000001134.a.a ENSGT00940000160425 ENSGT00940000155079.b ENSGT00940000156743 ENSGT01030000238532 ENSGT00940000155487 ENSGT00940000157767 ENSGT00900000143708 ENSGT00390000001374.a ENSGT00390000011725.d.d Sperm whale DUPLICATION Sperm whale DUPLICATION Sperm whale MODERN SPECIES 8 PDCD5 (ENSPCTG00005016856) DPY19L3 (ENSPCTG00005017005) ZNF507 (ENSPCTG00005017138) ENSPCTG00005017174 TSHZ3 (ENSPCTG00005017204) ZNF536 (ENSPCTG00005017245) URI1 (ENSPCTG00005017313) ENSPCTG00005017597 CCNE1 (ENSPCTG00005017668) C17H19orf12 (ENSPCTG00005017766) PLEKHF1 (ENSPCTG00005017836) POP4 (ENSPCTG00005017854) VSTM2B (ENSPCTG00005017910) ENSPCTG00005017977 ENSPCTG00005018104 ENSPCTG00005018116 ##22 SHCBP1 (ENSPCTG00005018139) MYLK3 (ENSPCTG00005018229) ORC6 (ENSPCTG00005018581) C16orf87 (ENSPCTG00005018678) GPT2 (ENSPCTG00005018753) DNAJA2 (ENSPCTG00005018810) ENSPCTG00005008968 ENSPCTG00005009015 ITFG1 (ENSPCTG00005009263) PHKB (ENSPCTG00005009489) ENSPCTG00005009613 ENSPCTG00005009733 LONP2 (ENSPCTG00005009803) SIAH1 (ENSPCTG00005009946) N4BP1 (ENSPCTG00005009990) Sperm whale MODERN SPECIES 4 ENSPCTG00005011406 MYCBP2 (ENSPCTG00005010000) FBXL3 (ENSPCTG00005009923) CLN5 (ENSPCTG00005009824) ACOD1 (ENSPCTG00005009721) KCTD12 (ENSPCTG00005009703) ENSPCTG00005009672 ENSPCTG00005009634 LMO7 (ENSPCTG00005008737) UCHL3 (ENSPCTG00005008650) COMMD6 (ENSPCTG00005008603) TBC1D4 (ENSPCTG00005008106) KLF12 (ENSPCTG00005008057) ENSPCTG00005008037 KLF5 (ENSPCTG00005008002) ENSPCTG00005007978 ##22 ENSPCTG00005007954 PIBF1 (ENSPCTG00005007892) DIS3 (ENSPCTG00005007725) BORA (ENSPCTG00005007642) ENSPCTG00005007621 ENSPCTG00005007587 DACH1 (ENSPCTG00005007043) ENSPCTG00005006965 KLHL1 (ENSPCTG00005006854) ENSPCTG00005006815 ENSPCTG00005006787 PCDH9 (ENSPCTG00005006709) ENSPCTG00005006677 ENSPCTG00005006666 PCDH20 (ENSPCTG00005006653) Sperm whale MODERN SPECIES 19 IFNAR1 (ENSPCTG00005003415) IFNAR2 (ENSPCTG00005003398) ENSPCTG00005003381 OLIG1 (ENSPCTG00005003370) OLIG2 (ENSPCTG00005003364) C8H21orf62 (ENSPCTG00005003354) PAXBP1 (ENSPCTG00005003338) SYNJ1 (ENSPCTG00005003044) CFAP298 (ENSPCTG00005002934) EVA1C (ENSPCTG00005002920) ENSPCTG00005002863 MIS18A (ENSPCTG00005002827) HUNK (ENSPCTG00005002812) SCAF4 (ENSPCTG00005002739) SOD1 (ENSPCTG00005002658) ENSPCTG00005002649 ##22 ENSPCTG00005002633 TIAM1 (ENSPCTG00005002554) KRTAP8-1 (ENSPCTG00005002493) ENSPCTG00005002481 ENSPCTG00005002470 KRTAP21-1 (ENSPCTG00005002461) KRTAP19-7 (ENSPCTG00005002417) KRTAP19-6 (ENSPCTG00005002408) ENSPCTG00005002396 KRTAP19-5 (ENSPCTG00005002391) KRTAP19-2 (ENSPCTG00005002385) KRTAP15-1 (ENSPCTG00005002379) ENSPCTG00005002334 ENSPCTG00005002325 ENSPCTG00005002320 Odontoceti_a ANCESTRAL SPECIES 30 ENSGT00390000017860.a.b ENSGT00530000063872.B ENSGT00940000171241.b ENSGT00940000155756 ENSGT00940000159395 ENSGT00390000010065 ENSGT00390000015700.a ENSGT00940000161074.a ENSGT00950000183159.b ENSGT00940000154925.g ENSGT00390000018369 ENSGT00940000158486 ENSGT00940000158108 ENSGT00950000183087.A.b.b.i.b ENSGT00940000156711 ENSGT00950000182895.a.a.a.a.a.b ##22 ENSGT00950000182994.B.a.b.e.a.a ENSGT00390000015293 ENSGT00530000063106.C ENSGT00390000013790 ENSGT00390000005954.u ENSGT00390000001134.a.a Odontoceti_b DUPLICATION Odontoceti_b ANCESTRAL SPECIES 47 ENSGT00950000182895.a.a.a.a.a.b.c ##22 ENSGT00950000182994.B.a.b.e.a.a Monodontidae ANCESTRAL SPECIES 15 ENSGT00530000063872.B ENSGT00940000171241.b ENSGT00940000155756 ENSGT00940000159395 ENSGT00390000010065 ENSGT00390000015700.a ENSGT00940000161074.a ENSGT00890000139406.a.e.a ENSGT00950000183159.b ENSGT00940000154925.g ENSGT00390000018369 ENSGT00940000158486 ENSGT00940000158108 ENSGT00940000156711 ENSGT00390000015293 ENSGT00950000182895.a.a.a.a.a.b.c ##22 ENSGT00950000182994.B.a.b.e.a.a ENSGT00530000063106.C ENSGT00390000013790 ENSGT00390000005954.u ENSGT00390000001134.a.a ENSGT00940000155079.b ENSGT00940000160425 ENSGT00940000162770.d.b.b ENSGT00940000156743 ENSGT00390000012818.o.a.a.a.a.d ENSGT00940000155487 ENSGT00940000157767 ENSGT00900000143708 ENSGT00940000156894 ENSGT00940000155454 Narwhal MODERN SPECIES 315 MYCBP2 (ENSMMNG00015016992) ENSMMNG00015017650 FBXL3 (ENSMMNG00015017674) CLN5 (ENSMMNG00015017691) ACOD1 (ENSMMNG00015017722) KCTD12 (ENSMMNG00015017797) ENSMMNG00015017817 LMO7 (ENSMMNG00015018041) ENSMMNG00015018642 COMMD6 (ENSMMNG00015018693) TBC1D4 (ENSMMNG00015018825) KLF12 (ENSMMNG00015019076) ENSMMNG00015019092 KLF5 (ENSMMNG00015019110) PIBF1 (ENSMMNG00015019151) ENSMMNG00015019250 ##22 ENSMMNG00015019284 DIS3 (ENSMMNG00015019346) BORA (ENSMMNG00015019468) ENSMMNG00015019529 DACH1 (ENSMMNG00015019593) ENSMMNG00015019804 ENSMMNG00015019820 ENSMMNG00015019835 ENSMMNG00015019859 ENSMMNG00015019903 PCDH9 (ENSMMNG00015019935) ENSMMNG00015019971 ENSMMNG00015019990 KLHL1 (ENSMMNG00015020052) PCDH20 (ENSMMNG00015020105) Beluga whale MODERN SPECIES 31 SLAIN1 (ENSDLEG00000005784) SCEL (ENSDLEG00000005850) MYCBP2 (ENSDLEG00000006276) ENSDLEG00000011497 FBXL3 (ENSDLEG00000011515) CLN5 (ENSDLEG00000011542) ENSDLEG00000011570 ENSDLEG00000011579 ENSDLEG00000011583 LMO7 (ENSDLEG00000011610) ENSDLEG00000011694 TBC1D4 (ENSDLEG00000011785) KLF12 (ENSDLEG00000012532) KLF5 (ENSDLEG00000012550) PIBF1 (ENSDLEG00000012557) ENSDLEG00000012602 ##22 ENSDLEG00000012614 DIS3 (ENSDLEG00000012632) BORA (ENSDLEG00000012671) MZT1 (ENSDLEG00000012717) DACH1 (ENSDLEG00000012731) Vaquita MODERN SPECIES 9 EDNRB (ENSPSNG00000018047) SLAIN1 (ENSPSNG00000017838) SCEL (ENSPSNG00000017634) ENSPSNG00000017556 MYCBP2 (ENSPSNG00000015938) FBXL3 (ENSPSNG00000015814) CLN5 (ENSPSNG00000015682) ACOD1 (ENSPSNG00000015547) KCTD12 (ENSPSNG00000015501) LMO7 (ENSPSNG00000014621) ENSPSNG00000014378 TBC1D4 (ENSPSNG00000013331) KLF12 (ENSPSNG00000013166) ENSPSNG00000013114 KLF5 (ENSPSNG00000013052) ENSPSNG00000012991 ##22 ENSPSNG00000012931 PIBF1 (ENSPSNG00000012877) DIS3 (ENSPSNG00000012802) BORA (ENSPSNG00000012652) ENSPSNG00000012582 DACH1 (ENSPSNG00000012131) ENSPSNG00000011916 ENSPSNG00000019494 ENSPSNG00000019482 PCDH9 (ENSPSNG00000019382) KLHL1 (ENSPSNG00000019122) ENSPSNG00000019056 ENSPSNG00000019031 ENSPSNG00000019011 PCDH20 (ENSPSNG00000018984) Odontoceti_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b.d ##22 Vaquita MODERN SPECIES 15 IL10RB (ENSPSNG00000001403) IFNAR2 (ENSPSNG00000001381) OLIG1 (ENSPSNG00000001364) OLIG2 (ENSPSNG00000001353) C21orf62 (ENSPSNG00000001342) PAXBP1 (ENSPSNG00000001317) SYNJ1 (ENSPSNG00000000790) CFAP298 (ENSPSNG00000000434) ENSPSNG00000000372 URB1 (ENSPSNG00000000249) MRAP (ENSPSNG00000000204) MIS18A (ENSPSNG00000000189) HUNK (ENSPSNG00000000164) SCAF4 (ENSPSNG00000019142) SOD1 (ENSPSNG00000019088) ENSPSNG00000019049 ##22 TIAM1 (ENSPSNG00000018566) KRTAP8-1 (ENSPSNG00000018427) ENSPSNG00000018395 ENSPSNG00000018375 ENSPSNG00000018356 KRTAP19-7 (ENSPSNG00000018343) KRTAP19-6 (ENSPSNG00000018325) ENSPSNG00000018295 KRTAP19-2 (ENSPSNG00000018192) KRTAP15-1 (ENSPSNG00000018174) ENSPSNG00000018158 ENSPSNG00000017997 ENSPSNG00000017975 ENSPSNG00000017921 CLDN8 (ENSPSNG00000017906) Blue whale MODERN SPECIES 9 SLAIN1 (ENSBMSG00010018187) SCEL (ENSBMSG00010018108) ENSBMSG00010018068 ENSBMSG00010018045 FBXL3 (ENSBMSG00010018021) CLN5 (ENSBMSG00010018004) ACOD1 (ENSBMSG00010017966) KCTD12 (ENSBMSG00010017947) LMO7 (ENSBMSG00010017756) ENSBMSG00010017635 COMMD6 (ENSBMSG00010017594) TBC1D4 (ENSBMSG00010017194) KLF12 (ENSBMSG00010017107) ENSBMSG00010017083 KLF5 (ENSBMSG00010017047) ENSBMSG00010017030 ##22 ENSBMSG00010017003 PIBF1 (ENSBMSG00010016967) ENSBMSG00010016935 DIS3 (ENSBMSG00010016842) BORA (ENSBMSG00010016734) ENSBMSG00010016680 ENSBMSG00010016658 DACH1 (ENSBMSG00010016614) KLHL1 (ENSBMSG00010016532) ENSBMSG00010016473 PCDH9 (ENSBMSG00010016410) ENSBMSG00010016327 ENSBMSG00010016311 MAP9 (ENSBMSG00010016232) NPY2R (ENSBMSG00010016212) Pecora ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Percora_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Bovidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Caprinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Goat MODERN SPECIES 16 KCTD1 (ENSCHIG00000013103) AQP4 (ENSCHIG00000010124) CHST9 (ENSCHIG00000021685) ENSCHIG00000003085 CDH2 (ENSCHIG00000018662) ENSCHIG00000007130 DSC3 (ENSCHIG00000021926) DSC2 (ENSCHIG00000020827) DSC1 (ENSCHIG00000006661) DSG1 (ENSCHIG00000019924) DSG4 (ENSCHIG00000024819) DSG3 (ENSCHIG00000021842) DSG2 (ENSCHIG00000016271) TTR (ENSCHIG00000009995) B4GALT6 (ENSCHIG00000000421) ENSCHIG00000018964 ##22 TRAPPC8 (ENSCHIG00000010164) RNF125 (ENSCHIG00000010114) RNF138 (ENSCHIG00000000469) MEP1B (ENSCHIG00000000423) GAREM1 (ENSCHIG00000000390) KLHL14 (ENSCHIG00000000359) ENSCHIG00000000323 ENSCHIG00000000291 ASXL3 (ENSCHIG00000000206) NOL4 (ENSCHIG00000000136) ENSCHIG00000009565 ENSCHIG00000021743 DTNA (ENSCHIG00000013831) ENSCHIG00000019330 MAPRE2 (ENSCHIG00000000350) Siberian musk deer MODERN SPECIES 134 AQP4 (ENSMMSG00000013736) CHST9 (ENSMMSG00000013757) ENSMMSG00000013798 CDH2 (ENSMMSG00000013812) ENSMMSG00000013827 DSC3 (ENSMMSG00000013852) DSC2 (ENSMMSG00000013889) DSC1 (ENSMMSG00000014056) DSG1 (ENSMMSG00000014105) DSG4 (ENSMMSG00000014133) DSG3 (ENSMMSG00000014240) DSG2 (ENSMMSG00000014273) TTR (ENSMMSG00000014292) B4GALT6 (ENSMMSG00000014329) TRAPPC8 (ENSMMSG00000014450) ENSMMSG00000014484 ##22 Euarchontoglires ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Primates ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Haplorrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Simiiformes ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Catarrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Hominoidea ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Hominidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Homo/Pan/Gorilla group ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Gorilla DUPLICATION Gorilla MODERN SPECIES 18 SLC35B1 (ENSGGOG00000004776) FAM117A (ENSGGOG00000004783) KAT7 (ENSGGOG00000007469) TAC4 (ENSGGOG00000007479) ENSGGOG00000042625 DLX4 (ENSGGOG00000014992) DLX3 (ENSGGOG00000014997) ITGA3 (ENSGGOG00000013558) PDK2 (ENSGGOG00000015583) SAMD14 (ENSGGOG00000015586) PPP1R9B (ENSGGOG00000042350) ENSGGOG00000013204 SGCA (ENSGGOG00000013199) COL1A1 (ENSGGOG00000013208) ENSGGOG00000039430 ##22 ENSGGOG00000041481 ##22 TMEM92 (ENSGGOG00000025886) XYLT2 (ENSGGOG00000011942) MRPL27 (ENSGGOG00000011954) EME1 (ENSGGOG00000011302) LRRC59 (ENSGGOG00000006310) CHAD (ENSGGOG00000006518) ACSF2 (ENSGGOG00000006513) RSAD1 (ENSGGOG00000006524) MYCBPAP (ENSGGOG00000003367) EPN3 (ENSGGOG00000003374) SPATA20 (ENSGGOG00000003379) CACNA1G (ENSGGOG00000003386) ABCC3 (ENSGGOG00000003404) ANKRD40 (ENSGGOG00000027851) LUC7L3 (ENSGGOG00000024399) Gorilla MODERN SPECIES 18 ENSGGOG00000009295 SLC35B1 (ENSGGOG00000004776) FAM117A (ENSGGOG00000004783) KAT7 (ENSGGOG00000007469) TAC4 (ENSGGOG00000007479) ENSGGOG00000042625 DLX4 (ENSGGOG00000014992) DLX3 (ENSGGOG00000014997) ITGA3 (ENSGGOG00000013558) PDK2 (ENSGGOG00000015583) SAMD14 (ENSGGOG00000015586) PPP1R9B (ENSGGOG00000042350) ENSGGOG00000013204 SGCA (ENSGGOG00000013199) COL1A1 (ENSGGOG00000013208) ENSGGOG00000039430 ##22 ENSGGOG00000041481 ##22 TMEM92 (ENSGGOG00000025886) XYLT2 (ENSGGOG00000011942) MRPL27 (ENSGGOG00000011954) EME1 (ENSGGOG00000011302) LRRC59 (ENSGGOG00000006310) CHAD (ENSGGOG00000006518) ACSF2 (ENSGGOG00000006513) RSAD1 (ENSGGOG00000006524) MYCBPAP (ENSGGOG00000003367) EPN3 (ENSGGOG00000003374) SPATA20 (ENSGGOG00000003379) CACNA1G (ENSGGOG00000003386) ABCC3 (ENSGGOG00000003404) ANKRD40 (ENSGGOG00000027851) Euarchontoglires_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Glires ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Rodentia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Rodentia_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Myomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Muroidea ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Muroidea_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Cricetidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Cricetidae_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Northern American deer mouse MODERN SPECIES 13 Ybey (ENSPEMG00000000492) Mcm3ap (ENSPEMG00000014754) Lss (ENSPEMG00000024002) Spatc1l (ENSPEMG00000015524) Ftcd (ENSPEMG00000011905) Col6a2 (ENSPEMG00000023614) Col6a1 (ENSPEMG00000011883) Pcbp3 (ENSPEMG00000000587) Slc19a1 (ENSPEMG00000019847) Col18a1 (ENSPEMG00000019720) Pofut2 (ENSPEMG00000021691) Adarb1 (ENSPEMG00000022360) Fam207a (ENSPEMG00000029013) Itgb2 (ENSPEMG00000023793) Pttg1ip (ENSPEMG00000022833) #21 ENSPEMG00000029963 ##22 ENSPEMG00000022514 Ube2g2 (ENSPEMG00000027627) #23 ENSPEMG00000022026 ENSPEMG00000007691 ENSPEMG00000026871 ENSPEMG00000029694 ENSPEMG00000021662 ENSPEMG00000023368 Tspear (ENSPEMG00000016261) #24 Lrrc3 (ENSPEMG00000030505) Trpm2 (ENSPEMG00000012456) #25 Cfap410 (ENSPEMG00000022711) Pfkl (ENSPEMG00000022772) Aire (ENSPEMG00000022217) Dnmt3l (ENSPEMG00000009203) Atlantogenata ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Xenarthra ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.a.b ##22 Armadillo MODERN SPECIES 1109 FBLN2 (ENSDNOG00000040368) ENSDNOG00000033945 ##22 HDAC11 (ENSDNOG00000018976) Euteleostomi ANCESTRAL SPECIES 391 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000159292 ENSGT00940000153335.a.a ENSGT00940000155792 ENSGT00470000042284 ENSGT00940000160342 ENSGT00940000162599 Sarcopterygii ANCESTRAL SPECIES 625 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b Tetrapoda ANCESTRAL SPECIES 43 ENSGT00390000007870 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00940000158025.b ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 ENSGT00940000156964.C Anura ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Leishan spiny toad MODERN SPECIES ANAPC4 (ENSLLEG00000002614) ENSLLEG00000002565 ENSLLEG00000002525 SEL1L3 (ENSLLEG00000002464) SMIM20 (ENSLLEG00000002447) ENSLLEG00000002439 RBPJ (ENSLLEG00000002191) CCKAR (ENSLLEG00000002111) TBC1D19 (ENSLLEG00000001951) ENSLLEG00000001885 ENSLLEG00000001875 ENSLLEG00000001870 STIM2 (ENSLLEG00000001772) ENSLLEG00000001744 ENSLLEG00000001733 SUMO4 (ENSLLEG00000001722) ##22 PCDH7 (ENSLLEG00000001706) ENSLLEG00000001692 ENSLLEG00000001685 ENSLLEG00000001675 ENSLLEG00000001663 ENSLLEG00000001653 ENSLLEG00000001642 ARAP2 (ENSLLEG00000001523) DTHD1 (ENSLLEG00000001477) ENSLLEG00000001456 NWD2 (ENSLLEG00000001408) ENSLLEG00000001385 RELL1 (ENSLLEG00000001341) ENSLLEG00000001319 ENSLLEG00000001306 Amniota ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Mammalia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Theria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Marsupialia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Marsupialia_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Diprotodontia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Diprotodontia_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Common wonbat DUPLICATION Common wonbat MODERN SPECIES 581 MRPS11 (ENSVURG00010007495) MRPL46 (ENSVURG00010007499) NTRK3 (ENSVURG00010007552) ENSVURG00010007638 ENSVURG00010007660 AGBL1 (ENSVURG00010007705) ENSVURG00010007764 KLHL25 (ENSVURG00010007790) AKAP13 (ENSVURG00010007848) ENSVURG00010008106 SV2B (ENSVURG00010008124) SLCO3A1 (ENSVURG00010008152) ENSVURG00010008170 ST8SIA2 (ENSVURG00010008194) FAM174B (ENSVURG00010008202) ENSVURG00010008206 ##22 ENSVURG00010008243 CHD2 (ENSVURG00010008249) RGMA (ENSVURG00010008284) ENSVURG00010008330 MCTP2 (ENSVURG00010008372) ENSVURG00010008422 NR2F2 (ENSVURG00010008510) ARRDC4 (ENSVURG00010008567) ENSVURG00010008616 ENSVURG00010008635 IGF1R (ENSVURG00010008673) ENSVURG00010008695 ENSVURG00010008708 TTC23 (ENSVURG00010008723) ENSVURG00010008734 Common wonbat DUPLICATION Common wonbat DUPLICATION Common wonbat DUPLICATION Common wonbat MODERN SPECIES 199 ENSVURG00010019810 ##22 Common wonbat MODERN SPECIES 45 ENSVURG00010003595 ##22 Common wonbat MODERN SPECIES 182 ENSVURG00010019002 ##22 Common wonbat MODERN SPECIES 1208 ENSVURG00010018184 ##22 Common wonbat MODERN SPECIES 329 ST8SIA6 (ENSVURG00010023156) VIM (ENSVURG00010023151) TRDMT1 (ENSVURG00010023147) CUBN (ENSVURG00010023102) RSU1 (ENSVURG00010023079) C1QL3 (ENSVURG00010023075) MINDY3 (ENSVURG00010023070) ITGA8 (ENSVURG00010023059) FAM171A1 (ENSVURG00010023047) RPP38 (ENSVURG00010023042) NMT2 (ENSVURG00010023015) ENSVURG00010023003 CROT (ENSVURG00010022991) ABCB1 (ENSVURG00010022915) RUNDC3B (ENSVURG00010022885) ENSVURG00010022879 ##22 SLC25A40 (ENSVURG00010022874) ENSVURG00010022870 ENSVURG00010022866 ENSVURG00010022864 ADAM22 (ENSVURG00010022803) SRI (ENSVURG00010022789) STEAP4 (ENSVURG00010022786) TEX47 (ENSVURG00010022782) ENSVURG00010022771 STEAP2 (ENSVURG00010022766) CFAP69 (ENSVURG00010022759) FAM237B (ENSVURG00010022755) GTPBP10 (ENSVURG00010022747) CLDN12 (ENSVURG00010022740) ENSVURG00010022737 Common wonbat MODERN SPECIES 1043 ENSVURG00010005796 ENSVURG00010005927 ENSVURG00010005939 MFAP4 (ENSVURG00010005955) MAPK7 (ENSVURG00010005968) ENSVURG00010005995 B9D1 (ENSVURG00010006008) EPN2 (ENSVURG00010006060) ENSVURG00010006089 SLC5A10 (ENSVURG00010006136) FAM83G (ENSVURG00010006169) PRPSAP2 (ENSVURG00010006180) ENSVURG00010006225 CNTNAP4 (ENSVURG00010006392) ENSVURG00010008401 ENSVURG00010008426 ##22 LRRC2 (ENSVURG00010008461) ENSVURG00010008474 PRXL2C (ENSVURG00010008497) ENSVURG00010008524 HABP4 (ENSVURG00010008580) ZNF367 (ENSVURG00010008593) SLC35D2 (ENSVURG00010008615) HSD17B3 (ENSVURG00010008649) ENSVURG00010008678 PTCH1 (ENSVURG00010008737) ENSVURG00010008849 AOPEP (ENSVURG00010008898) ENSVURG00010008944 ENSVURG00010008957 ENSVURG00010009003 koala DUPLICATION koala MODERN SPECIES 70 TBXAS1 (ENSPCIG00000036732) HIPK2 (ENSPCIG00000023035) CLEC2L (ENSPCIG00000034555) ENSPCIG00000023028 ENSPCIG00000034509 FMC1 (ENSPCIG00000020085) UBN2 (ENSPCIG00000024850) TTC26 (ENSPCIG00000019467) ENSPCIG00000021649 ENSPCIG00000021651 KIAA1549 (ENSPCIG00000021658) ATP6V0A4 (ENSPCIG00000021675) SVOPL (ENSPCIG00000021679) TRIM24 (ENSPCIG00000021685) AKR1D1 (ENSPCIG00000021895) ENSPCIG00000035150 ##22 CREB3L2 (ENSPCIG00000021896) ENSPCIG00000017897 ENSPCIG00000032206 PTN (ENSPCIG00000017862) CHRM2 (ENSPCIG00000017859) ENSPCIG00000017857 MTPN (ENSPCIG00000017854) FAM180A (ENSPCIG00000029611) SLC13A4 (ENSPCIG00000029613) koala MODERN SPECIES 86 ENSPCIG00000001111 ##22 JRKL (ENSPCIG00000001127) CCDC82 (ENSPCIG00000001133) ENSPCIG00000001152 MTMR2 (ENSPCIG00000001170) CEP57 (ENSPCIG00000035948) FAM76B (ENSPCIG00000001260) SESN3 (ENSPCIG00000001309) ENDOD1 (ENSPCIG00000001331) CWC15 (ENSPCIG00000001348) AMOTL1 (ENSPCIG00000001368) PIWIL4 (ENSPCIG00000030600) ENSPCIG00000030597 C11orf97 (ENSPCIG00000034457) ANKRD49 (ENSPCIG00000009610) MRE11 (ENSPCIG00000009614) Eutheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Atlantogenata ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Xenarthra ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Armadillo DUPLICATION Armadillo MODERN SPECIES 2424 DYDC2 (ENSDNOG00000042509) DYDC1 (ENSDNOG00000016410) MAT1A (ENSDNOG00000003326) ENSDNOG00000004771 ENSDNOG00000036947 SFTPD (ENSDNOG00000005030) ENSDNOG00000034049 ENSDNOG00000037754 ENSDNOG00000039258 ENSDNOG00000038646 ENSDNOG00000037235 ENSDNOG00000033746 ENSDNOG00000031432 ##22 ENSDNOG00000038438 ENSDNOG00000041460 ENSDNOG00000031713 ENSDNOG00000041218 ENSDNOG00000046498 ENSDNOG00000040745 Armadillo MODERN SPECIES 3601 ENSDNOG00000049400 ENSDNOG00000043563 ##22 Armadillo MODERN SPECIES 1229 ISCA2 (ENSDNOG00000034125) LTBP2 (ENSDNOG00000016211) AREL1 (ENSDNOG00000003340) YLPM1 (ENSDNOG00000039154) PROX2 (ENSDNOG00000005528) DLST (ENSDNOG00000033083) RPS6KL1 (ENSDNOG00000045055) PGF (ENSDNOG00000042336) EIF2B2 (ENSDNOG00000032838) MLH3 (ENSDNOG00000048962) ENSDNOG00000047029 ZC2HC1C (ENSDNOG00000046626) NEK9 (ENSDNOG00000001965) TMED10 (ENSDNOG00000019851) FOS (ENSDNOG00000031516) ENSDNOG00000038922 ##22 JDP2 (ENSDNOG00000033141) BATF (ENSDNOG00000047121) FLVCR2 (ENSDNOG00000034014) ERG28 (ENSDNOG00000017697) ENSDNOG00000004904 TGFB3 (ENSDNOG00000004915) IFT43 (ENSDNOG00000043800) Afrotheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Tenrec MODERN SPECIES 7542 ENSETEG00000010256 ##22 Afrotheria_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Elephant MODERN SPECIES 301 PJVK (ENSLAFG00000016082) FKBP7 (ENSLAFG00000016244) PLEKHA3 (ENSLAFG00000006385) ENSLAFG00000016250 ENSLAFG00000030749 ENSLAFG00000016368 SESTD1 (ENSLAFG00000010863) ENSLAFG00000029425 ZNF385B (ENSLAFG00000016135) CWC22 (ENSLAFG00000014802) UBE2E3 (ENSLAFG00000007452) ITGA4 (ENSLAFG00000000610) ENSLAFG00000027079 CERKL (ENSLAFG00000031356) NEUROD1 (ENSLAFG00000000612) SUMO4 (ENSLAFG00000029061) ##22 ITPRID2 (ENSLAFG00000006221) PPP1R1C (ENSLAFG00000006229) PDE1A (ENSLAFG00000013038) DNAJC10 (ENSLAFG00000007093) FRZB (ENSLAFG00000030213) NCKAP1 (ENSLAFG00000005981) DUSP19 (ENSLAFG00000008594) NUP35 (ENSLAFG00000008155) ENSLAFG00000027122 ZNF804A (ENSLAFG00000006588) ENSLAFG00000000124 ENSLAFG00000016861 ENSLAFG00000028848 ENSLAFG00000001563 ITGAV (ENSLAFG00000004362) Boreoeutheria ANCESTRAL SPECIES 4 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 Euarchontoglires DUPLICATION Euarchontoglires DUPLICATION Euarchontoglires ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.a ##22 Euarchontoglires_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.a ##22 Glires ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.a ##22 Lagomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.a ##22 Rabbit MODERN SPECIES 14 TRAPPC9 (ENSOCUG00000008622) KCNK9 (ENSOCUG00000013532) ENSOCUG00000008699 FAM135B (ENSOCUG00000004004) ENSOCUG00000032971 ##22 ENSOCUG00000035921 KHDRBS3 (ENSOCUG00000000743) ENSOCUG00000034283 ZFAT (ENSOCUG00000017015) ENSOCUG00000035655 ENSOCUG00000030362 ENSOCUG00000031605 ENSOCUG00000000157 NDRG1 (ENSOCUG00000016394) CCN4 (ENSOCUG00000016390) SLA (ENSOCUG00000017684) ENSOCUG00000002999 ENSOCUG00000034085 PHF20L1 (ENSOCUG00000009768) TMEM71 (ENSOCUG00000009761) Rodentia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.a ##22 Rodentia_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.a ##22 Myomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.a ##22 Lesser Egyptian jerboa MODERN SPECIES 124 E330021D16Rik (ENSJJAG00000013240) Usp9x (ENSJJAG00000023449) Ddx3x (ENSJJAG00000019645) Nyx (ENSJJAG00000020005) Cask (ENSJJAG00000022808) Gpr34 (ENSJJAG00000013331) ENSJJAG00000010094 ENSJJAG00000010651 ENSJJAG00000010745 ENSJJAG00000010951 Maoa (ENSJJAG00000011331) Maob (ENSJJAG00000012262) Ndp (ENSJJAG00000013001) Efhc2 (ENSJJAG00000013365) ENSJJAG00000013961 ENSJJAG00000013443 ##22 Kdm6a (ENSJJAG00000016122) Dipk2b (ENSJJAG00000009786) ENSJJAG00000009800 ENSJJAG00000010953 ENSJJAG00000011130 Chst7 (ENSJJAG00000013054) ENSJJAG00000012232 Primates ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.a ##22 Haplorrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.a ##22 Simiiformes ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.a ##22 Catarrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.a ##22 Hominoidea ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.a ##22 Gibbon DUPLICATION Gibbon MODERN SPECIES 449 SLC25A43 (ENSNLEG00000028599) PGRMC1 (ENSNLEG00000014842) KIAA1210 (ENSNLEG00000014834) ENSNLEG00000034815 ENSNLEG00000014827 ENSNLEG00000030944 ENSNLEG00000033569 IL13RA1 (ENSNLEG00000014814) DOCK11 (ENSNLEG00000014789) WDR44 (ENSNLEG00000014755) KLHL13 (ENSNLEG00000014736) ENSNLEG00000034861 ENSNLEG00000014732 SLC6A14 (ENSNLEG00000014716) AGTR2 (ENSNLEG00000032737) ENSNLEG00000028901 ##22 PLS3 (ENSNLEG00000014671) ENSNLEG00000033339 ENSNLEG00000028889 LRCH2 (ENSNLEG00000014656) IL13RA2 (ENSNLEG00000014640) ENSNLEG00000033896 HTR2C (ENSNLEG00000030638) ENSNLEG00000027151 AMOT (ENSNLEG00000014625) LHFPL1 (ENSNLEG00000014619) RTL4 (ENSNLEG00000014618) TRPC5 (ENSNLEG00000014606) ALG13 (ENSNLEG00000014546) ENSNLEG00000028689 SERTM2 (ENSNLEG00000030840) Gibbon MODERN SPECIES 4 HEATR6 (ENSNLEG00000008764) ENSNLEG00000033290 ITGA3 (ENSNLEG00000008858) PDK2 (ENSNLEG00000008902) ENSNLEG00000008926 PPP1R9B (ENSNLEG00000008937) SGCA (ENSNLEG00000008950) ENSNLEG00000008990 COL1A1 (ENSNLEG00000008996) ENSNLEG00000018650 ##22 TMEM92 (ENSNLEG00000009007) XYLT2 (ENSNLEG00000009017) MRPL27 (ENSNLEG00000009044) EME1 (ENSNLEG00000009053) LRRC59 (ENSNLEG00000027978) ENSNLEG00000026991 ENSNLEG00000018247 ENSNLEG00000029848 MYCBPAP (ENSNLEG00000007738) ENSNLEG00000007742 SPATA20 (ENSNLEG00000007743) CACNA1G (ENSNLEG00000007757) ENSNLEG00000027641 ENSNLEG00000007870 ANKRD40 (ENSNLEG00000027193) Euarchontoglires DUPLICATION Euarchontoglires ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.b.a ##22 Euarchontoglires_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.b.a ##22 Glires ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.b.a ##22 Lagomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.b.a ##22 Rabbit MODERN SPECIES 7 OPTN (ENSOCUG00000006794) CCDC3 (ENSOCUG00000002994) ENSOCUG00000011909 CAMK1D (ENSOCUG00000011626) CDC123 (ENSOCUG00000009316) ENSOCUG00000009308 SEC61A2 (ENSOCUG00000009305) DHTKD1 (ENSOCUG00000009296) UPF2 (ENSOCUG00000006230) PROSER2 (ENSOCUG00000006225) ECHDC3 (ENSOCUG00000009149) USP6NL (ENSOCUG00000007066) ENSOCUG00000031347 CELF2 (ENSOCUG00000004961) ENSOCUG00000007168 ENSOCUG00000027930 ##22 GATA3 (ENSOCUG00000017821) TAF3 (ENSOCUG00000027324) ATP5F1C (ENSOCUG00000004642) KIN (ENSOCUG00000004637) ITIH2 (ENSOCUG00000004620) ENSOCUG00000036255 ITIH5 (ENSOCUG00000016945) SFMBT2 (ENSOCUG00000013281) PRKCQ (ENSOCUG00000009863) ENSOCUG00000014318 ENSOCUG00000023468 ENSOCUG00000008228 ENSOCUG00000022121 ENSOCUG00000024479 MPP7 (ENSOCUG00000014344) Primates ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.b.a ##22 Haplorrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.b.a ##22 Simiiformes ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.b.a ##22 Catarrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.b.a ##22 Cercopithecidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.b.a ##22 Cercopithecinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.b.a ##22 Cercopithecinae_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.b.a ##22 Cercopithecinae_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.b.a ##22 Cercopithecinae_d ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.b.a ##22 Drill MODERN SPECIES 1282 ENSMLEG00000024981 ##22 Euarchontoglires ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.b.b ##22 Euarchontoglires_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.b.b ##22 Glires ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.j.b.b ##22 Lagomorpha ANCESTRAL SPECIES 90 ENSGT00390000007870 ENSGT00940000157800 ENSGT00940000165228 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b.j.b.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00950000182990.b ENSGT00390000013574 ENSGT00940000156964.C Rabbit MODERN SPECIES 578 ITGB4 (ENSOCUG00000014951) SAP30BP (ENSOCUG00000016220) RECQL5 (ENSOCUG00000016202) SMIM6 (ENSOCUG00000036696) ENSOCUG00000030919 ENSOCUG00000016181 LLGL2 (ENSOCUG00000022899) TSEN54 (ENSOCUG00000009875) ENSOCUG00000011862 TMEM94 (ENSOCUG00000005331) GRB2 (ENSOCUG00000006469) ENSOCUG00000017928 ENSOCUG00000006603 GGA3 (ENSOCUG00000006657) NUP85 (ENSOCUG00000006648) ENSOCUG00000028195 ##22 JPT1 (ENSOCUG00000002950) NT5C (ENSOCUG00000024974) SLC16A5 (ENSOCUG00000016231) ENSOCUG00000027777 ENSOCUG00000027682 ENSOCUG00000015537 MRPL58 (ENSOCUG00000000800) CDR2L (ENSOCUG00000000794) Euarchontoglires ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k ##22 Primates ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k ##22 Strepsirrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k ##22 Bushbaby MODERN SPECIES 237 ENSOGAG00000032343 ENSOGAG00000014680 NECTIN3 (ENSOGAG00000008891) ENSOGAG00000025233 CD96 (ENSOGAG00000008892) ZBED2 (ENSOGAG00000034292) PLCXD2 (ENSOGAG00000029065) PHLDB2 (ENSOGAG00000008896) ABHD10 (ENSOGAG00000008902) TAGLN3 (ENSOGAG00000008904) TMPRSS7 (ENSOGAG00000000110) C3orf52 (ENSOGAG00000000111) GCSAM (ENSOGAG00000012539) SLC9C1 (ENSOGAG00000000113) CD200 (ENSOGAG00000000114) ENSOGAG00000026479 ##22 BTLA (ENSOGAG00000014110) ATG3 (ENSOGAG00000014113) SLC35A5 (ENSOGAG00000014119) CCDC80 (ENSOGAG00000014121) ENSOGAG00000014124 ENSOGAG00000026509 GTPBP8 (ENSOGAG00000002997) NEPRO (ENSOGAG00000003001) BOC (ENSOGAG00000011767) ENSOGAG00000011774 ENSOGAG00000011776 SPICE1 (ENSOGAG00000011166) SIDT1 (ENSOGAG00000011173) USF3 (ENSOGAG00000032665) ENSOGAG00000011197 Lemuriformes ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k ##22 Lemuriformes_a ANCESTRAL SPECIES 18 ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b.k ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 Coquerels sifaka MODERN SPECIES 862 LEMD3 (ENSPCOG00000025387) WIF1 (ENSPCOG00000016842) TBC1D30 (ENSPCOG00000025525) GNS (ENSPCOG00000016347) RASSF3 (ENSPCOG00000014715) TBK1 (ENSPCOG00000020253) XPOT (ENSPCOG00000028383) C12orf56 (ENSPCOG00000023353) KICS2 (ENSPCOG00000014498) SRGAP1 (ENSPCOG00000022103) RXYLT1 (ENSPCOG00000028035) AVPR1A (ENSPCOG00000013252) PPM1H (ENSPCOG00000015943) MON2 (ENSPCOG00000025766) USP15 (ENSPCOG00000017465) ENSPCOG00000027584 ##22 ENSPCOG00000022346 ENSPCOG00000028199 ENSPCOG00000013959 ENSPCOG00000027882 ENSPCOG00000027137 LRIG3 (ENSPCOG00000015743) ENSPCOG00000016419 Greater bamboo lemur DUPLICATION Greater bamboo lemur MODERN SPECIES 248 GGA3 (ENSPSMG00000001702) NUP85 (ENSPSMG00000001484) ENSPSMG00000001441 ##22 ENSPSMG00000001394 ENSPSMG00000001366 NT5C (ENSPSMG00000001360) ARMC7 (ENSPSMG00000001335) SLC16A5 (ENSPSMG00000001284) ENSPSMG00000001263 KCTD2 (ENSPSMG00000001249) ENSPSMG00000001233 MRPL58 (ENSPSMG00000001196) CDR2L (ENSPSMG00000001185) HID1 (ENSPSMG00000001166) OTOP3 (ENSPSMG00000001104) OTOP2 (ENSPSMG00000001056) USH1G (ENSPSMG00000001050) FADS6 (ENSPSMG00000001046) Greater bamboo lemur DUPLICATION Greater bamboo lemur MODERN SPECIES 1802 ENSPSMG00000001010 ##22 Greater bamboo lemur MODERN SPECIES 241 C7orf57 (ENSPSMG00000022056) SUN3 (ENSPSMG00000022042) HUS1 (ENSPSMG00000022024) PKD1L1 (ENSPSMG00000022013) TNS3 (ENSPSMG00000021992) IGFBP3 (ENSPSMG00000021888) IGFBP1 (ENSPSMG00000021863) CCDC201 (ENSPSMG00000021845) ADCY1 (ENSPSMG00000021834) ENSPSMG00000021820 ##22 RAMP3 (ENSPSMG00000021814) ENSPSMG00000021808 TBRG4 (ENSPSMG00000021781) ENSPSMG00000021743 CCM2 (ENSPSMG00000021677) MYO1G (ENSPSMG00000021537) ENSPSMG00000021520 PURB (ENSPSMG00000021514) H2AZ2 (ENSPSMG00000021505) ENSPSMG00000021440 ZMIZ2 (ENSPSMG00000021326) OGDH (ENSPSMG00000020942) TMED4 (ENSPSMG00000020530) DDX56 (ENSPSMG00000020497) NPC1L1 (ENSPSMG00000020447) Greater bamboo lemur MODERN SPECIES 133 DUSP26 (ENSPSMG00000008715) RNF122 (ENSPSMG00000008703) TTI2 (ENSPSMG00000008685) MAK16 (ENSPSMG00000008646) FUT10 (ENSPSMG00000008612) NRG1 (ENSPSMG00000008358) ENSPSMG00000008043 ##22 WRN (ENSPSMG00000008034) PURG (ENSPSMG00000008013) TEX15 (ENSPSMG00000008001) PPP2CB (ENSPSMG00000007966) UBXN8 (ENSPSMG00000007928) GSR (ENSPSMG00000007837) SMIM18 (ENSPSMG00000007631) GTF2E2 (ENSPSMG00000007626) ENSPSMG00000007595 RBPMS (ENSPSMG00000007578) Mouse lemur DUPLICATION Mouse lemur MODERN SPECIES 4 SNAP47 (ENSMICG00000029011) JMJD4 (ENSMICG00000036474) ENSMICG00000042765 ATP12A (ENSMICG00000007697) RNF17 (ENSMICG00000010364) CENPJ (ENSMICG00000010400) PARP4 (ENSMICG00000028028) MPHOSPH8 (ENSMICG00000014677) PSPC1 (ENSMICG00000013970) ZMYM5 (ENSMICG00000012322) ZMYM2 (ENSMICG00000002834) GJA3 (ENSMICG00000029524) GJB2 (ENSMICG00000002850) GJB6 (ENSMICG00000004508) CRYL1 (ENSMICG00000037380) ENSMICG00000042919 ##22 ENSMICG00000006396 IFT88 (ENSMICG00000004618) IL17D (ENSMICG00000004631) EEF1AKMT1 (ENSMICG00000004634) XPO4 (ENSMICG00000004636) LATS2 (ENSMICG00000033886) SAP18 (ENSMICG00000046836) ENSMICG00000042277 SKA3 (ENSMICG00000031401) ZDHHC20 (ENSMICG00000003725) MICU2 (ENSMICG00000006910) FGF9 (ENSMICG00000029695) GPR12 (ENSMICG00000045060) WASF3 (ENSMICG00000027798) CDK8 (ENSMICG00000012312) Mouse lemur MODERN SPECIES 30 OSR1 (ENSMICG00000004493) ENSMICG00000041804 WDR35 (ENSMICG00000037969) MATN3 (ENSMICG00000032185) LAPTM4A (ENSMICG00000031395) SDC1 (ENSMICG00000041634) PUM2 (ENSMICG00000011647) RHOB (ENSMICG00000029771) HS1BP3 (ENSMICG00000027064) GDF7 (ENSMICG00000044629) LDAH (ENSMICG00000011319) APOB (ENSMICG00000011331) TDRD15 (ENSMICG00000026358) KLHL29 (ENSMICG00000032037) ATAD2B (ENSMICG00000003489) ENSMICG00000030239 ##22 ENSMICG00000043253 ENSMICG00000001508 MFSD2B (ENSMICG00000027625) WDCP (ENSMICG00000001526) FKBP1B (ENSMICG00000028839) SF3B6 (ENSMICG00000032874) TP53I3 (ENSMICG00000001537) PFN4 (ENSMICG00000001541) FAM228B (ENSMICG00000032483) FAM228A (ENSMICG00000001546) ITSN2 (ENSMICG00000001552) NCOA1 (ENSMICG00000037585) PTRHD1 (ENSMICG00000001578) CENPO (ENSMICG00000001580) ADCY3 (ENSMICG00000001584) Haplorrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k ##22 Tarsier DUPLICATION Tarsier DUPLICATION Tarsier DUPLICATION Tarsier MODERN SPECIES 2964 ENSTSYG00000034622 ##22 UBR7 (ENSTSYG00000009478) GON7 (ENSTSYG00000009476) Tarsier MODERN SPECIES 6012 ENSTSYG00000032030 ##22 Tarsier MODERN SPECIES 2112 ENSTSYG00000033809 ##22 Tarsier MODERN SPECIES 7015 ZBTB33 (ENSTSYG00000000245) TMEM255A (ENSTSYG00000000246) ENSTSYG00000036840 ##22 ATP1B4 (ENSTSYG00000011536) LAMP2 (ENSTSYG00000012618) CUL4B (ENSTSYG00000002338) ENSTSYG00000027569 MCTS1 (ENSTSYG00000001440) C1GALT1C1 (ENSTSYG00000001441) Simiiformes ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k ##22 Catarrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k ##22 Hominoidea ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k ##22 Gibbon MODERN SPECIES 23 SIRT5 (ENSNLEG00000000843) NOL7 (ENSNLEG00000000883) RANBP9 (ENSNLEG00000000899) MCUR1 (ENSNLEG00000033914) RNF182 (ENSNLEG00000000920) CD83 (ENSNLEG00000000924) ENSNLEG00000030335 JARID2 (ENSNLEG00000000943) DTNBP1 (ENSNLEG00000031419) MYLIP (ENSNLEG00000001019) GMPR (ENSNLEG00000001043) ATXN1 (ENSNLEG00000001064) STMND1 (ENSNLEG00000001072) RBM24 (ENSNLEG00000001075) CAP2 (ENSNLEG00000001079) ENSNLEG00000030044 ##22 FAM8A1 (ENSNLEG00000001130) NUP153 (ENSNLEG00000001141) KIF13A (ENSNLEG00000001201) ENSNLEG00000034312 NHLRC1 (ENSNLEG00000018685) TPMT (ENSNLEG00000035563) KDM1B (ENSNLEG00000001591) ENSNLEG00000001663 ENSNLEG00000033342 ENSNLEG00000032974 RNF144B (ENSNLEG00000001700) MBOAT1 (ENSNLEG00000001717) E2F3 (ENSNLEG00000033231) ENSNLEG00000030332 CDKAL1 (ENSNLEG00000001768) Hominidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k ##22 Orangutan DUPLICATION Orangutan DUPLICATION Orangutan DUPLICATION Orangutan MODERN SPECIES 20 DNAJC2 (ENSPPYG00000017882) PSMC2 (ENSPPYG00000017883) SLC26A5 (ENSPPYG00000017884) RELN (ENSPPYG00000017885) ORC5 (ENSPPYG00000017886) LHFPL3 (ENSPPYG00000017887) KMT2E (ENSPPYG00000017888) SRPK2 (ENSPPYG00000017889) ENSPPYG00000040945 PUS7 (ENSPPYG00000017891) RINT1 (ENSPPYG00000017892) ENSPPYG00000017893 ATXN7L1 (ENSPPYG00000018291) CDHR3 (ENSPPYG00000018293) SYPL1 (ENSPPYG00000041789) ENSPPYG00000040630 ##22 ENSPPYG00000018285 ENSPPYG00000030217 NAMPT (ENSPPYG00000018270) CCDC71L (ENSPPYG00000017895) PIK3CG (ENSPPYG00000017896) PRKAR2B (ENSPPYG00000017897) HBP1 (ENSPPYG00000017898) COG5 (ENSPPYG00000017899) GPR22 (ENSPPYG00000017900) DUS4L (ENSPPYG00000017901) BCAP29 (ENSPPYG00000032287) SLC26A4 (ENSPPYG00000017903) CBLL1 (ENSPPYG00000017904) SLC26A3 (ENSPPYG00000017905) DLD (ENSPPYG00000017906) Orangutan MODERN SPECIES CEP170 (ENSPPYG00000000063) PLD5 (ENSPPYG00000000064) MAP1LC3C (ENSPPYG00000010665) ENSPPYG00000037133 BECN2 (ENSPPYG00000000066) EXO1 (ENSPPYG00000000067) WDR64 (ENSPPYG00000000068) OPN3 (ENSPPYG00000000069) KMO (ENSPPYG00000000070) FH (ENSPPYG00000000071) RGS7 (ENSPPYG00000000072) GREM2 (ENSPPYG00000000073) ENSPPYG00000032558 CHRM3 (ENSPPYG00000000076) ENSPPYG00000040859 ENSPPYG00000031844 ##22 ENSPPYG00000041772 ZP4 (ENSPPYG00000000078) RYR2 (ENSPPYG00000000079) MT1HL1 (ENSPPYG00000000080) MTR (ENSPPYG00000000083) ACTN2 (ENSPPYG00000000084) HEATR1 (ENSPPYG00000000085) ENSPPYG00000038440 ENSPPYG00000000087 ENSPPYG00000031231 EDARADD (ENSPPYG00000041338) ERO1B (ENSPPYG00000000089) GPR137B (ENSPPYG00000000090) NID1 (ENSPPYG00000000091) LYST (ENSPPYG00000000092) Orangutan MODERN SPECIES 20 TAS2R3 (ENSPPYG00000018069) TAS2R4 (ENSPPYG00000035803) TAS2R5 (ENSPPYG00000018267) PRSS37 (ENSPPYG00000018071) CLEC5A (ENSPPYG00000018072) ENSPPYG00000018074 MGAM2 (ENSPPYG00000018075) PRSS58 (ENSPPYG00000018076) ENSPPYG00000040295 ENSPPYG00000030426 ENSPPYG00000038450 ENSPPYG00000030363 ENSPPYG00000037063 ENSPPYG00000037561 ENSPPYG00000038711 ENSPPYG00000018142 ##22 ENSPPYG00000035555 ENSPPYG00000018080 ENSPPYG00000018082 TRBV7-3 (ENSPPYG00000040004) TRBV9 (ENSPPYG00000039736) ENSPPYG00000038513 ENSPPYG00000018089 ENSPPYG00000033532 ENSPPYG00000031459 TRBV5-5 (ENSPPYG00000034567) ENSPPYG00000030080 ENSPPYG00000036601 ENSPPYG00000018244 ENSPPYG00000031744 TRBV11-3 (ENSPPYG00000033318) Orangutan DUPLICATION Orangutan MODERN SPECIES 173 ENSPPYG00000041501 ##22 Orangutan MODERN SPECIES 20 GPR37 (ENSPPYG00000017963) ENSPPYG00000037399 POT1 (ENSPPYG00000017964) GRM8 (ENSPPYG00000017966) ZNF800 (ENSPPYG00000017967) GCC1 (ENSPPYG00000017968) ARF5 (ENSPPYG00000017969) FSCN3 (ENSPPYG00000017970) PAX4 (ENSPPYG00000017971) SND1 (ENSPPYG00000017972) LRRC4 (ENSPPYG00000017973) LEP (ENSPPYG00000017974) RBM28 (ENSPPYG00000017975) PRRT4 (ENSPPYG00000039151) IMPDH1 (ENSPPYG00000017976) ENSPPYG00000037429 ##22 ENSPPYG00000033487 ENSPPYG00000035564 GARIN1A (ENSPPYG00000017980) GARIN1B (ENSPPYG00000017981) CALU (ENSPPYG00000017982) OPN1SW (ENSPPYG00000017983) CCDC136 (ENSPPYG00000017984) FLNC (ENSPPYG00000017985) ATP6V1F (ENSPPYG00000017986) ATP6V1FNB (ENSPPYG00000031385) KCP (ENSPPYG00000017988) IRF5 (ENSPPYG00000017989) TNPO3 (ENSPPYG00000017990) TSPAN33 (ENSPPYG00000017992) SMO (ENSPPYG00000017993) Homo/Pan/Gorilla group ANCESTRAL SPECIES 4 ENSGT00950000182962.b.b ENSGT01060000248564.b.a.a.b ENSGT00550000074943 ENSGT00740000115564 ENSGT00940000159373 ENSGT00940000159117 ENSGT00390000009166 ENSGT00940000159634 ENSGT00530000063929.a.a ENSGT00940000163170 ENSGT00530000063695.b.a.a ENSGT00950000183168.B.b ENSGT00510000046986.n.a.a.b ENSGT00390000000663 ENSGT00390000005306.v ENSGT00950000182895.a.a.a.a.b.k ##22 ENSGT00940000159826 ENSGT00390000013227.a.a ENSGT00940000153609.b ENSGT00940000156693 ENSGT00390000012341 ENSGT00390000017606.a.a.i.a.b.a.b.a.a.b ENSGT00390000001965 ENSGT00940000157463 ENSGT00940000154164.c ENSGT00940000153498.B.b ENSGT00390000010827 ENSGT00390000009366.c.a ENSGT00390000018829.y.b ENSGT00550000074866.i ENSGT00880000138028.b.b.a Homo/Pan group ANCESTRAL SPECIES 5 ENSGT00950000182962.b.b ENSGT01060000248564.b.a.a.b ENSGT00550000074943 ENSGT00740000115564 ENSGT00940000159373 ENSGT00940000159117 ENSGT00390000009166 ENSGT00940000159634 ENSGT00530000063929.a.a ENSGT00940000163170 ENSGT00530000063695.b.a.a ENSGT00950000183168.B.b ENSGT00510000046986.n.a.a.b ENSGT00390000000663 ENSGT00390000005306.v ENSGT00950000182895.a.a.a.a.b.k ##22 ENSGT00940000159826 ENSGT00390000013227.a.a ENSGT00940000153609.b ENSGT00940000156693 ENSGT00390000012341 ENSGT00390000017606.a.a.i.a.b.a.b.a.a.b ENSGT00390000001965 ENSGT00940000157463 ENSGT00940000154164.c ENSGT00940000153498.B.b ENSGT00390000010827 ENSGT00390000009366.c.a ENSGT00390000018829.y.b ENSGT00550000074866.i ENSGT00880000138028.b.b.a Human MODERN SPECIES 18 PLAGL1 (ENSG00000118495) SF3B5 (ENSG00000169976) STX11 (ENSG00000135604) UTRN (ENSG00000152818) EPM2A (ENSG00000112425) FBXO30 (ENSG00000118496) SHPRH (ENSG00000146414) GRM1 (ENSG00000152822) RAB32 (ENSG00000118508) ADGB (ENSG00000118492) STXBP5 (ENSG00000164506) SAMD5 (ENSG00000203727) SASH1 (ENSG00000111961) UST (ENSG00000111962) TAB2 (ENSG00000055208) SUMO4 (ENSG00000177688) ##22 ZC3H12D (ENSG00000178199) PPIL4 (ENSG00000131013) GINM1 (ENSG00000055211) KATNA1 (ENSG00000186625) LATS1 (ENSG00000131023) NUP43 (ENSG00000120253) PCMT1 (ENSG00000120265) LRP11 (ENSG00000120256) RAET1E (ENSG00000164520) RAET1G (ENSG00000203722) ULBP2 (ENSG00000131015) ULBP1 (ENSG00000111981) RAET1L (ENSG00000155918) ULBP3 (ENSG00000131019) PPP1R14C (ENSG00000198729) Pan ANCESTRAL SPECIES 5 ENSGT00950000182962.b.b ENSGT01060000248564.b.a.a.b ENSGT00550000074943 ENSGT00740000115564 ENSGT00940000159373 ENSGT00940000159117 ENSGT00390000009166 ENSGT00940000159634 ENSGT00530000063929.a.a ENSGT00940000163170 ENSGT00530000063695.b.a.a ENSGT00950000183168.B.b ENSGT00510000046986.n.a.a.b ENSGT00390000000663 ENSGT00390000005306.v ENSGT00950000182895.a.a.a.a.b.k ##22 ENSGT00940000159826 ENSGT00390000013227.a.a ENSGT00940000153609.b ENSGT00940000156693 ENSGT00390000012341 ENSGT00390000017606.a.a.i.a.b.a.b.a.a.b ENSGT00390000001965 ENSGT00940000157463 ENSGT00940000154164.c ENSGT00940000153498.B.b ENSGT00390000010827 ENSGT00390000009366.c.a ENSGT00940000167536 ENSGT00550000074866.i ENSGT00880000138028.b.b.a Bonobo DUPLICATION Bonobo MODERN SPECIES 19 CDC40 (ENSPPAG00000042663) WASF1 (ENSPPAG00000004961) FIG4 (ENSPPAG00000016262) AK9 (ENSPPAG00000043771) ZBTB24 (ENSPPAG00000005762) MICAL1 (ENSPPAG00000040546) SMPD2 (ENSPPAG00000031363) PPIL6 (ENSPPAG00000043241) CD164 (ENSPPAG00000036863) ENSPPAG00000021752 CEP57L1 (ENSPPAG00000042916) SESN1 (ENSPPAG00000041767) ENSPPAG00000011766 ARMC2 (ENSPPAG00000029392) ENSPPAG00000031267 ENSPPAG00000037969 ##22 ENSPPAG00000000536 AFG1L (ENSPPAG00000019727) SNX3 (ENSPPAG00000032382) NR2E1 (ENSPPAG00000038954) OSTM1 (ENSPPAG00000043416) ENSPPAG00000033502 SEC63 (ENSPPAG00000011744) SCML4 (ENSPPAG00000020145) SOBP (ENSPPAG00000037988) PDSS2 (ENSPPAG00000035956) BEND3 (ENSPPAG00000039227) MTRES1 (ENSPPAG00000032445) ENSPPAG00000028244 QRSL1 (ENSPPAG00000030790) RTN4IP1 (ENSPPAG00000031639) Bonobo MODERN SPECIES 19 ENSPPAG00000041758 PPP1R11 (ENSPPAG00000042995) POLR1H (ENSPPAG00000034397) ENSPPAG00000007839 ENSPPAG00000033792 ENSPPAG00000004281 ENSPPAG00000000657 Papa-A (ENSPPAG00000033438) HLA-G (ENSPPAG00000031248) ENSPPAG00000038818 ENSPPAG00000027713 ENSPPAG00000038821 HLA-F (ENSPPAG00000028356) ZFP57 (ENSPPAG00000026274) MOG (ENSPPAG00000021798) ENSPPAG00000037261 ##22 GABBR1 (ENSPPAG00000042582) ENSPPAG00000007853 ENSPPAG00000027124 UBD (ENSPPAG00000005180) ENSPPAG00000038862 MAS1L (ENSPPAG00000027381) OR2H1 (ENSPPAG00000010612) OR10C1 (ENSPPAG00000022808) ENSPPAG00000018245 ENSPPAG00000017906 ENSPPAG00000017644 OR12D3 (ENSPPAG00000026156) OR5V1 (ENSPPAG00000017324) ENSPPAG00000039963 OR14J1 (ENSPPAG00000011799) Chimpanzee DUPLICATION Chimpanzee DUPLICATION Chimpanzee MODERN SPECIES 597 ENSPTRG00000042824 ##22 ENSPTRG00000046523 ENSPTRG00000045367 ENSPTRG00000043891 ZNF713 (ENSPTRG00000019202) ENSPTRG00000043904 ENSPTRG00000050260 ENSPTRG00000052383 ENSPTRG00000042789 ENSPTRG00000047861 ENSPTRG00000050759 ENSPTRG00000048122 ENSPTRG00000049416 ENSPTRG00000047487 Chimpanzee MODERN SPECIES 20 GRB10 (ENSPTRG00000019191) ENSPTRG00000052827 COBL (ENSPTRG00000019192) ENSPTRG00000043909 POM121L12 (ENSPTRG00000041196) ENSPTRG00000051306 VSTM2A (ENSPTRG00000019194) SEC61G (ENSPTRG00000019195) ENSPTRG00000052582 EGFR (ENSPTRG00000019196) ENSPTRG00000045734 LANCL2 (ENSPTRG00000019197) VOPP1 (ENSPTRG00000019198) ENSPTRG00000049014 ENSPTRG00000046629 ENSPTRG00000050669 ##22 ENSPTRG00000045887 SEPTIN14 (ENSPTRG00000019200) ENSPTRG00000052525 ENSPTRG00000042855 MRPS17 (ENSPTRG00000019203) NIPSNAP2 (ENSPTRG00000019204) PSPH (ENSPTRG00000019205) CCT6A (ENSPTRG00000019206) SUMF2 (ENSPTRG00000019207) PHKG1 (ENSPTRG00000019208) CHCHD2 (ENSPTRG00000019209) ENSPTRG00000051239 ENSPTRG00000046749 ENSPTRG00000049234 ENSPTRG00000043348 Chimpanzee MODERN SPECIES 972 KIAA1210 (ENSPTRG00000022219) CT47C1 (ENSPTRG00000040870) LONRF3 (ENSPTRG00000022217) ENSPTRG00000000263 ZCCHC12 (ENSPTRG00000022215) IL13RA1 (ENSPTRG00000022214) DOCK11 (ENSPTRG00000022212) ENSPTRG00000052513 KLHL13 (ENSPTRG00000044070) ENSPTRG00000017238 ENSPTRG00000051003 CT83 (ENSPTRG00000028214) SLC6A14 (ENSPTRG00000022208) AGTR2 (ENSPTRG00000052314) ENSPTRG00000043128 ENSPTRG00000040819 ##22 ENSPTRG00000043395 PLS3 (ENSPTRG00000022205) ENSPTRG00000049789 ENSPTRG00000044154 RBMXL3 (ENSPTRG00000028217) LRCH2 (ENSPTRG00000022201) IL13RA2 (ENSPTRG00000022200) ENSPTRG00000052825 HTR2C (ENSPTRG00000022199) ENSPTRG00000049885 AMOT (ENSPTRG00000022197) LHFPL1 (ENSPTRG00000022195) RTL4 (ENSPTRG00000052718) ENSPTRG00000050241 TRPC5OS (ENSPTRG00000045594) Chimpanzee MODERN SPECIES 19 WASF1 (ENSPTRG00000018494) GPR6 (ENSPTRG00000018493) FIG4 (ENSPTRG00000018492) AK9 (ENSPTRG00000018489) ZBTB24 (ENSPTRG00000018487) MICAL1 (ENSPTRG00000018486) SMPD2 (ENSPTRG00000018484) PPIL6 (ENSPTRG00000018483) CD164 (ENSPTRG00000018482) ENSPTRG00000046150 CEP57L1 (ENSPTRG00000018480) SESN1 (ENSPTRG00000018479) ENSPTRG00000045969 ARMC2 (ENSPTRG00000018477) ENSPTRG00000052234 ENSPTRG00000045358 ##22 FOXO3 (ENSPTRG00000018476) AFG1L (ENSPTRG00000018474) SNX3 (ENSPTRG00000018473) NR2E1 (ENSPTRG00000018472) OSTM1 (ENSPTRG00000018471) ENSPTRG00000049504 SEC63 (ENSPTRG00000018470) SCML4 (ENSPTRG00000018469) SOBP (ENSPTRG00000018467) PDSS2 (ENSPTRG00000018466) BEND3 (ENSPTRG00000018465) MTRES1 (ENSPTRG00000018464) ENSPTRG00000042685 QRSL1 (ENSPTRG00000018462) RTN4IP1 (ENSPTRG00000018461) Chimpanzee MODERN SPECIES 19 PPP1R11 (ENSPTRG00000042828) POLR1H (ENSPTRG00000017914) ENSPTRG00000046166 ENSPTRG00000051450 ENSPTRG00000046552 ENSPTRG00000017913 ENSPTRG00000017912 PATR-H (ENSPTRG00000017906) PATR-G (ENSPTRG00000017908) ENSPTRG00000043460 ENSPTRG00000046279 ENSPTRG00000034414 PATR-F (ENSPTRG00000017910) ZFP57 (ENSPTRG00000017904) MOG (ENSPTRG00000017903) ENSPTRG00000050826 ##22 GABBR1 (ENSPTRG00000049937) ENSPTRG00000051925 ENSPTRG00000049294 UBD (ENSPTRG00000017901) ENSPTRG00000050839 OR2H1 (ENSPTRG00000051419) OR10C1 (ENSPTRG00000017895) OR11A1 (ENSPTRG00000034080) ENSPTRG00000017893 ENSPTRG00000044200 OR12D3 (ENSPTRG00000047098) OR5V1 (ENSPTRG00000029785) ENSPTRG00000043896 OR14J1 (ENSPTRG00000017891) ENSPTRG00000047825 Gorilla DUPLICATION Gorilla MODERN SPECIES 19 TRIM10 (ENSGGOG00000016366) TRIM40 (ENSGGOG00000004900) TRIM31 (ENSGGOG00000015219) RNF39 (ENSGGOG00000027860) PPP1R11 (ENSGGOG00000026830) POLR1H (ENSGGOG00000026358) ENSGGOG00000043114 ENSGGOG00000038876 ENSGGOG00000039717 ENSGGOG00000005772 HLA-G (ENSGGOG00000008012) ENSGGOG00000037193 ENSGGOG00000041980 ZFP57 (ENSGGOG00000016915) MOG (ENSGGOG00000016910) ENSGGOG00000043299 ##22 GABBR1 (ENSGGOG00000004472) ENSGGOG00000001168 ENSGGOG00000044199 UBD (ENSGGOG00000008729) ENSGGOG00000041540 OR2H1 (ENSGGOG00000036921) ENSGGOG00000023956 ENSGGOG00000008752 OR12D3 (ENSGGOG00000027890) OR5V1 (ENSGGOG00000007846) ENSGGOG00000023765 OR14J1 (ENSGGOG00000024507) ENSGGOG00000026870 OR2J2 (ENSGGOG00000036189) OR2J3 (ENSGGOG00000036403) Gorilla MODERN SPECIES 19 WASF1 (ENSGGOG00000007331) GPR6 (ENSGGOG00000013815) FIG4 (ENSGGOG00000015662) AK9 (ENSGGOG00000022458) ZBTB24 (ENSGGOG00000000430) MICAL1 (ENSGGOG00000003401) SMPD2 (ENSGGOG00000003394) PPIL6 (ENSGGOG00000039681) CD164 (ENSGGOG00000003383) ENSGGOG00000022034 CEP57L1 (ENSGGOG00000014982) SESN1 (ENSGGOG00000008196) ENSGGOG00000024963 ARMC2 (ENSGGOG00000008179) ENSGGOG00000043953 ENSGGOG00000040628 ##22 ENSGGOG00000003517 AFG1L (ENSGGOG00000004244) SNX3 (ENSGGOG00000043438) NR2E1 (ENSGGOG00000038410) ENSGGOG00000041051 OSTM1 (ENSGGOG00000009031) ENSGGOG00000026319 SEC63 (ENSGGOG00000002560) SCML4 (ENSGGOG00000006782) SOBP (ENSGGOG00000015284) PDSS2 (ENSGGOG00000040827) BEND3 (ENSGGOG00000005456) MTRES1 (ENSGGOG00000006113) QRSL1 (ENSGGOG00000008261) RTN4IP1 (ENSGGOG00000008254) Cercopithecidae ANCESTRAL SPECIES 4 ENSGT00530000063583.b ENSGT00950000182962.b.b ENSGT01060000248564.b.a.a.b ENSGT00550000074943 ENSGT00740000115564 ENSGT00940000159373 ENSGT00940000159117 ENSGT00390000009166 ENSGT00940000159634 ENSGT00530000063929.a.a ENSGT00940000163170 ENSGT00530000063695.b ENSGT00950000183168.B.b ENSGT00390000000663 ENSGT00390000005306.v ENSGT00950000182895.a.a.a.a.b.k ##22 ENSGT00940000159826 ENSGT00390000013227.a.a ENSGT00940000153609.b ENSGT00940000156693 ENSGT00390000012341 ENSGT00390000001965 ENSGT00940000157463 ENSGT00910000147202 ENSGT00940000154164.c ENSGT00940000153498.B.b ENSGT00390000010827 ENSGT00390000009366.c.a ENSGT00390000018829.z ENSGT00550000074866.i ENSGT00880000138028.b.b Cercopithecinae ANCESTRAL SPECIES 6 ENSGT00530000063583.b ENSGT00950000182962.b.b ENSGT01060000248564.b.a.a.b ENSGT00550000074943 ENSGT00740000115564 ENSGT00940000159373 ENSGT00940000159117 ENSGT00390000009166 ENSGT00940000159634 ENSGT00530000063929.a.a ENSGT00940000163170 ENSGT00530000063695.b ENSGT00950000183168.B.b ENSGT00390000000663 ENSGT00390000005306.v ENSGT00950000182895.a.a.a.a.b.k ##22 ENSGT00940000159826 ENSGT00390000013227.a.a ENSGT00940000153609.b ENSGT00940000156693 ENSGT00390000012341 ENSGT00390000001965 ENSGT00940000157463 ENSGT00940000154164.c ENSGT00940000153498.B.b ENSGT00390000010827 ENSGT00390000009366.c.a.a ENSGT00390000018829.z ENSGT00550000074866.i ENSGT00880000138028.b.b ENSGT00940000155695 Cercopithecinae_a ANCESTRAL SPECIES 6 ENSGT00530000063583.b ENSGT00950000182962.b.b ENSGT01060000248564.b.a.a.b ENSGT00550000074943 ENSGT00740000115564 ENSGT00940000159373 ENSGT00940000159117 ENSGT00390000009166 ENSGT00940000159634 ENSGT00530000063929.a.a ENSGT00940000163170 ENSGT00530000063695.b ENSGT00950000183168.B.b ENSGT00390000000663 ENSGT00390000005306.v ENSGT00950000182895.a.a.a.a.b.k ##22 ENSGT00940000159826 ENSGT00390000013227.a.a ENSGT00940000153609.b ENSGT00940000156693 ENSGT00390000012341 ENSGT00940000153052.c.b.b.b.g.a.b ENSGT00390000004172 ENSGT00940000157993 ENSGT00530000063558.B ENSGT00390000011877 ENSGT00390000013931.a.b.b.ab ENSGT00390000013931.a.b.b.`b.a ENSGT01030000234626.B.w.a ENSGT00550000074878.`b.a.a.a ENSGT00390000006394 Cercopithecinae_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k ##22 Cercopithecinae_d ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k ##22 Sooty mangabey MODERN SPECIES 590 DDO (ENSCATG00000040509) METTL24 (ENSCATG00000037845) CDC40 (ENSCATG00000040070) WASF1 (ENSCATG00000029269) FIG4 (ENSCATG00000027130) AK9 (ENSCATG00000037888) ZBTB24 (ENSCATG00000039996) MICAL1 (ENSCATG00000032923) SMPD2 (ENSCATG00000015266) PPIL6 (ENSCATG00000042720) CD164 (ENSCATG00000038139) ENSCATG00000036188 CEP57L1 (ENSCATG00000029658) SESN1 (ENSCATG00000025577) ARMC2 (ENSCATG00000039753) ENSCATG00000039457 ##22 ENSCATG00000039123 AFG1L (ENSCATG00000009873) SNX3 (ENSCATG00000029122) NR2E1 (ENSCATG00000040877) OSTM1 (ENSCATG00000039725) ENSCATG00000038882 RSPH3 (ENSCATG00000037174) TAGAP (ENSCATG00000031180) FNDC1 (ENSCATG00000041959) SOD2 (ENSCATG00000041741) ENSCATG00000018577 ENSCATG00000032080 ENSCATG00000029973 ENSCATG00000040449 MRPL18 (ENSCATG00000039405) Rhinopithecus ANCESTRAL SPECIES 242 ENSGT00390000017837.b ENSGT00390000007526 ENSGT00940000161184 ENSGT00390000015518.g.a ENSGT00390000013550 ENSGT00940000157779 ENSGT00940000156788.c ENSGT00940000156380 ENSGT00390000007160.a.b ENSGT00390000011228.b.b ENSGT01020000230354.A.b ENSGT00390000015073 ENSGT00940000162606 ENSGT00390000000950.c.b.d.a.c ENSGT00390000001775.B ENSGT00950000182895.a.a.a.a.b.k ##22 ENSGT00390000011492 ENSGT00390000007134 ENSGT00390000014092.k.b ENSGT00530000063808.b Black snub-nosed monkey DUPLICATION Black snub-nosed monkey MODERN SPECIES 779 ENSRBIG00000016270 ##22 Black snub-nosed monkey MODERN SPECIES 67 OLAH (ENSRBIG00000039599) MEIG1 (ENSRBIG00000044905) DCLRE1C (ENSRBIG00000005533) ENSRBIG00000039063 HSPA14 (ENSRBIG00000019354) CDNF (ENSRBIG00000044339) FAM107B (ENSRBIG00000032052) ENSRBIG00000034991 ENSRBIG00000034183 FRMD4A (ENSRBIG00000039383) ENSRBIG00000036340 PRPF18 (ENSRBIG00000028028) ENSRBIG00000031985 ENSRBIG00000038357 PHYH (ENSRBIG00000037289) ENSRBIG00000027095 ##22 UCMA (ENSRBIG00000040839) MCM10 (ENSRBIG00000040349) OPTN (ENSRBIG00000040193) Golden snub-nosed monkey DUPLICATION Golden snub-nosed monkey MODERN SPECIES 3059 ENSRROG00000031339 ##22 Golden snub-nosed monkey MODERN SPECIES 1256 ENSRROG00000030876 ACBD7 (ENSRROG00000041805) OLAH (ENSRROG00000029983) MEIG1 (ENSRROG00000038951) DCLRE1C (ENSRROG00000008623) SUV39H2 (ENSRROG00000039345) HSPA14 (ENSRROG00000042394) CDNF (ENSRROG00000042124) FAM107B (ENSRROG00000037647) FRMD4A (ENSRROG00000040019) PRPF18 (ENSRROG00000040695) ENSRROG00000040519 ENSRROG00000033681 PHYH (ENSRROG00000041595) ENSRROG00000044159 ##22 UCMA (ENSRROG00000016628) MCM10 (ENSRROG00000045757) ENSRROG00000002106 OPTN (ENSRROG00000042736) Platyrrhini DUPLICATION Platyrrhini DUPLICATION Platyrrhini ANCESTRAL SPECIES 5 ENSGT00940000157250 ENSGT00940000154521.A ENSGT00940000157318 ENSGT00390000005589.a.a ENSGT01030000234563.b.a.a ENSGT00940000164031 ENSGT00950000183067.a.a ENSGT00950000182850.a.b.a.a ENSGT00530000063812.A ENSGT00940000159570 ENSGT00940000159423 ENSGT00390000000645 ENSGT00950000183001.b ENSGT00940000156391 ENSGT00940000162580 ENSGT00950000182895.a.a.a.a.b.k.v.a ##22 ENSGT00940000161707.b ENSGT00390000004855 ENSGT00390000015386 ENSGT00940000159778 ENSGT00940000159741 ENSGT00390000002245 ENSGT00390000015863 ENSGT00940000160151 ENSGT00390000017459 ENSGT00830000128422.a ENSGT00940000158581 ENSGT00390000002216 ENSGT00510000046908.a.b ENSGT00390000000973.a.b ENSGT00390000010318.w Cebidae ANCESTRAL SPECIES 4 ENSGT00940000157250 ENSGT00940000154521.A ENSGT00940000157318 ENSGT00390000005589.a.a ENSGT01030000234563.b.a.a ENSGT00940000164031 ENSGT00950000183067.a.a ENSGT00950000182850.a.b.a.a ENSGT00530000063812.A ENSGT00940000159570 ENSGT00940000159423 ENSGT00390000000645 ENSGT00950000183001.b ENSGT00940000156391 ENSGT00940000162580 ENSGT00950000182895.a.a.a.a.b.k.v.a ##22 ENSGT00940000161707.b ENSGT00390000004855 ENSGT00390000015386 ENSGT00940000159778 ENSGT00940000159741 ENSGT00390000002245 ENSGT00390000015863 ENSGT00940000160151 ENSGT00390000017459 ENSGT00830000128422.a ENSGT00940000158581 ENSGT00390000002216 ENSGT00510000046908.a.b ENSGT00390000000973.a.b ENSGT00390000010318.w Cebidae_a ANCESTRAL SPECIES 171 ENSGT00940000162580 ENSGT00950000182895.a.a.a.a.b.k.v.a ##22 ENSGT00940000161707.b Bolivian squirrel monkey MODERN SPECIES 108 MRFAP1L1 (ENSSBOG00000033309) KIAA0232 (ENSSBOG00000026766) TBC1D14 (ENSSBOG00000029945) TADA2B (ENSSBOG00000033366) GRPEL1 (ENSSBOG00000023402) ENSSBOG00000029303 SORCS2 (ENSSBOG00000027153) AFAP1 (ENSSBOG00000027624) ABLIM2 (ENSSBOG00000018472) SH3TC1 (ENSSBOG00000025058) HTRA3 (ENSSBOG00000019152) ACOX3 (ENSSBOG00000022268) TRMT44 (ENSSBOG00000025156) GPR78 (ENSSBOG00000036138) CPZ (ENSSBOG00000023106) ENSSBOG00000026148 ##22 LRPAP1 (ENSSBOG00000025745) DOK7 (ENSSBOG00000034734) HGFAC (ENSSBOG00000025765) ENSSBOG00000029708 RGS12 (ENSSBOG00000001879) MSANTD1 (ENSSBOG00000032002) HTT (ENSSBOG00000001468) GRK4 (ENSSBOG00000034886) NOP14 (ENSSBOG00000034906) ENSSBOG00000030513 ADD1 (ENSSBOG00000032628) SH3BP2 (ENSSBOG00000004638) ENSSBOG00000028277 FAM193A (ENSSBOG00000035392) RNF4 (ENSSBOG00000031127) Capuchin MODERN SPECIES 117 KIAA0232 (ENSCCAG00000023673) TBC1D14 (ENSCCAG00000019475) TADA2B (ENSCCAG00000027900) GRPEL1 (ENSCCAG00000036101) SORCS2 (ENSCCAG00000021696) AFAP1 (ENSCCAG00000028544) ABLIM2 (ENSCCAG00000025531) SH3TC1 (ENSCCAG00000027117) HTRA3 (ENSCCAG00000036961) ACOX3 (ENSCCAG00000026216) TRMT44 (ENSCCAG00000018176) GPR78 (ENSCCAG00000023119) CPZ (ENSCCAG00000037917) ENSCCAG00000031132 HMX1 (ENSCCAG00000029215) ENSCCAG00000035547 ##22 ADRA2C (ENSCCAG00000033349) ZFYVE28 (ENSCCAG00000019800) MXD4 (ENSCCAG00000026915) HAUS3 (ENSCCAG00000037575) POLN (ENSCCAG00000026095) NAT8L (ENSCCAG00000033445) C4orf48 (ENSCCAG00000016052) NELFA (ENSCCAG00000025280) NSD2 (ENSCCAG00000036562) LETM1 (ENSCCAG00000022623) FGFR3 (ENSCCAG00000029787) TACC3 (ENSCCAG00000037097) TMEM129 (ENSCCAG00000021775) SLBP (ENSCCAG00000026134) FAM53A (ENSCCAG00000005420) Mas night monkey MODERN SPECIES 668 GPR78 (ENSANAG00000033684) CPZ (ENSANAG00000035632) HMX1 (ENSANAG00000004745) ENSANAG00000021870 ##22 ADRA2C (ENSANAG00000029681) Platyrrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.v.b ##22 Mas night monkey MODERN SPECIES 1281 SFN (ENSANAG00000016141) ENSANAG00000020454 ENSANAG00000019689 ENSANAG00000026846 GPN2 (ENSANAG00000035449) GPATCH3 (ENSANAG00000035944) NR0B2 (ENSANAG00000021024) NUDC (ENSANAG00000028557) KDF1 (ENSANAG00000027498) ENSANAG00000021922 TRNP1 (ENSANAG00000032266) TENT5B (ENSANAG00000028081) ENSANAG00000016046 SLC9A1 (ENSANAG00000028650) WDTC1 (ENSANAG00000025177) ENSANAG00000023312 ##22 TMEM222 (ENSANAG00000029313) SYTL1 (ENSANAG00000028160) MAP3K6 (ENSANAG00000027054) FCN3 (ENSANAG00000030001) CD164L2 (ENSANAG00000024020) GPR3 (ENSANAG00000016515) WASF2 (ENSANAG00000029609) AHDC1 (ENSANAG00000026196) FGR (ENSANAG00000033090) IFI6 (ENSANAG00000034223) FAM76A (ENSANAG00000034741) STX12 (ENSANAG00000034764) PPP1R8 (ENSANAG00000011047) THEMIS2 (ENSANAG00000032929) ENSANAG00000033411 Platyrrhini ANCESTRAL SPECIES 1 ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00940000164172 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620.i.a ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b.k.w ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00390000000703.h ENSGT00940000158336 ENSGT00390000003582.e.c.f ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Mas night monkey MODERN SPECIES 507 ITGB4 (ENSANAG00000024973) SAP30BP (ENSANAG00000036594) SMIM5 (ENSANAG00000036296) RECQL5 (ENSANAG00000026587) MYO15B (ENSANAG00000034867) LLGL2 (ENSANAG00000033885) TSEN54 (ENSANAG00000024061) CASKIN2 (ENSANAG00000035496) TMEM94 (ENSANAG00000038484) GRB2 (ENSANAG00000020705) SLC25A19 (ENSANAG00000031249) MIF4GD (ENSANAG00000027991) ENSANAG00000033690 GGA3 (ENSANAG00000027011) NUP85 (ENSANAG00000032152) ENSANAG00000034423 ##22 ENSANAG00000033280 NT5C (ENSANAG00000027951) SLC16A5 (ENSANAG00000032783) ENSANAG00000025299 ENSANAG00000012527 ENSANAG00000033243 MRPL58 (ENSANAG00000023857) ENSANAG00000002046 CDR2L (ENSANAG00000032903) HID1 (ENSANAG00000031278) OTOP3 (ENSANAG00000021341) OTOP2 (ENSANAG00000031819) USH1G (ENSANAG00000027670) FADS6 (ENSANAG00000036721) FDXR (ENSANAG00000029258) Cebidae ANCESTRAL SPECIES 25 ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00940000164172 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620.i.a ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b.k.w ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00390000000703.h ENSGT00940000158336 ENSGT00390000003582.e.c.f ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Marmoset MODERN SPECIES 4 ESCO2 (ENSCJAG00000015416) PBK (ENSCJAG00000015448) SCARA5 (ENSCJAG00000015467) NUGGC (ENSCJAG00000015456) ELP3 (ENSCJAG00000015478) PNOC (ENSCJAG00000015535) ZNF395 (ENSCJAG00000015540) FBXO16 (ENSCJAG00000015578) FZD3 (ENSCJAG00000015561) ENSCJAG00000085398 ENSCJAG00000079344 EXTL3 (ENSCJAG00000015598) ENSCJAG00000083098 INTS9 (ENSCJAG00000015614) HMBOX1 (ENSCJAG00000015654) ENSCJAG00000014551 ##22 KIF13B (ENSCJAG00000015694) ENSCJAG00000073616 ENSCJAG00000084199 ENSCJAG00000069286 MSRA (ENSCJAG00000015731) PRSS51 (ENSCJAG00000004206) PRSS55 (ENSCJAG00000004193) RP1L1 (ENSCJAG00000082129) C8orf74 (ENSCJAG00000004183) SOX7 (ENSCJAG00000047277) MTMR9 (ENSCJAG00000039182) ENSCJAG00000045521 FAM167A (ENSCJAG00000062421) ENSCJAG00000041309 BLK (ENSCJAG00000004076) Cebidae_a DUPLICATION Cebidae_a ANCESTRAL SPECIES 17 ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00940000164172 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620.i.a ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b.k.w.a ##22 ENSGT00940000164037 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00390000000703.h ENSGT00940000158336 ENSGT00390000003582.e.c.f ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Bolivian squirrel monkey DUPLICATION Bolivian squirrel monkey DUPLICATION Bolivian squirrel monkey MODERN SPECIES 44 ENSSBOG00000032883 DYNC1I1 (ENSSBOG00000033850) SLC25A13 (ENSSBOG00000035203) ENSSBOG00000035070 ENSSBOG00000031330 ENSSBOG00000034946 ENSSBOG00000033289 DLX6 (ENSSBOG00000020606) ENSSBOG00000026742 DLX5 (ENSSBOG00000032115) SDHAF3 (ENSSBOG00000031188) TAC1 (ENSSBOG00000031415) ASNS (ENSSBOG00000031816) ENSSBOG00000019705 C1GALT1 (ENSSBOG00000026512) ENSSBOG00000032452 ##22 COL28A1 (ENSSBOG00000035682) MIOS (ENSSBOG00000017338) ENSSBOG00000027188 RPA3 (ENSSBOG00000019538) UMAD1 (ENSSBOG00000029436) GLCCI1 (ENSSBOG00000032440) ICA1 (ENSSBOG00000031664) NXPH1 (ENSSBOG00000033774) ENSSBOG00000015022 ENSSBOG00000019517 PHF14 (ENSSBOG00000033689) ENSSBOG00000027959 THSD7A (ENSSBOG00000022829) ARID1A (ENSSBOG00000021791) PIGV (ENSSBOG00000031404) Bolivian squirrel monkey MODERN SPECIES 42 ENSSBOG00000023208 KATNAL1 (ENSSBOG00000009792) ENSSBOG00000020013 UBL3 (ENSSBOG00000009211) ENSSBOG00000028866 SLC7A1 (ENSSBOG00000020061) MTUS2 (ENSSBOG00000026505) ENSSBOG00000019071 SLC46A3 (ENSSBOG00000025396) POMP (ENSSBOG00000032229) FLT1 (ENSSBOG00000015766) ENSSBOG00000020899 PAN3 (ENSSBOG00000020298) ENSSBOG00000032374 FLT3 (ENSSBOG00000026666) ENSSBOG00000020835 ##22 ENSSBOG00000027743 CDX2 (ENSSBOG00000031573) PDX1 (ENSSBOG00000031436) GSX1 (ENSSBOG00000026103) ENSSBOG00000015416 ENSSBOG00000028482 ENSSBOG00000014497 LNX2 (ENSSBOG00000025148) MTIF3 (ENSSBOG00000030469) GTF3A (ENSSBOG00000002098) RASL11A (ENSSBOG00000025363) ENSSBOG00000031441 ENSSBOG00000023626 GPR12 (ENSSBOG00000015914) WASF3 (ENSSBOG00000025202) Bolivian squirrel monkey MODERN SPECIES 88 SAP30BP (ENSSBOG00000035245) RECQL5 (ENSSBOG00000033729) SMIM5 (ENSSBOG00000023506) MYO15B (ENSSBOG00000002740) LLGL2 (ENSSBOG00000035846) TSEN54 (ENSSBOG00000013543) CASKIN2 (ENSSBOG00000036195) TMEM94 (ENSSBOG00000026775) GRB2 (ENSSBOG00000033650) ENSSBOG00000033666 SLC25A19 (ENSSBOG00000024728) MIF4GD (ENSSBOG00000031820) MRPS7 (ENSSBOG00000030197) GGA3 (ENSSBOG00000029597) NUP85 (ENSSBOG00000024111) ENSSBOG00000026814 ##22 ENSSBOG00000035167 NT5C (ENSSBOG00000034545) ARMC7 (ENSSBOG00000000199) SLC16A5 (ENSSBOG00000025391) KCTD2 (ENSSBOG00000031518) ENSSBOG00000035533 MRPL58 (ENSSBOG00000036182) CDR2L (ENSSBOG00000019047) HID1 (ENSSBOG00000035074) OTOP3 (ENSSBOG00000021091) OTOP2 (ENSSBOG00000023685) USH1G (ENSSBOG00000028888) FADS6 (ENSSBOG00000008437) FDXR (ENSSBOG00000027964) GRIN2C (ENSSBOG00000029004) Cebidae_a DUPLICATION Cebidae_a ANCESTRAL SPECIES 21 ENSGT01100000267099 ENSGT00940000157870 ENSGT00530000063548.A ENSGT00390000012635.a.a ENSGT00390000010355.q.a ENSGT00940000161751 ENSGT00940000161759 ENSGT00530000064263 ENSGT01030000234601.c.b.a ENSGT00390000013620 ENSGT00940000153372.A.e.a.a ENSGT00940000162425 ENSGT00390000007731 ENSGT00390000013339 ENSGT00940000153402.d ENSGT00950000182895.a.a.a.a.b.k.w.b.a ##22 ENSGT00940000157778 ENSGT00910000147465 ENSGT00940000160196 ENSGT00940000154827 ENSGT00940000156423 ENSGT00940000153294.m.a.c.b.p ENSGT00530000064194 ENSGT00940000153294.m.a.c.a.e.b ENSGT00530000064292 ENSGT00940000157298 ENSGT00940000163699 ENSGT00940000162130 ENSGT00940000159174 ENSGT00950000183120.e.b.a.b ENSGT00940000157548 Capuchin MODERN SPECIES 536 PPEF2 (ENSCCAG00000027912) NAAA (ENSCCAG00000021356) ENSCCAG00000021489 SDAD1 (ENSCCAG00000033903) CXCL9 (ENSCCAG00000024472) CXCL10 (ENSCCAG00000029689) CXCL11 (ENSCCAG00000024245) ART3 (ENSCCAG00000019239) NUP54 (ENSCCAG00000037093) SCARB2 (ENSCCAG00000025609) FAM47E (ENSCCAG00000032649) STBD1 (ENSCCAG00000008849) CCDC158 (ENSCCAG00000034839) ENSCCAG00000033320 ENSCCAG00000023170 ENSCCAG00000027241 ##22 SHROOM3 (ENSCCAG00000023135) ENSCCAG00000032013 SEPTIN11 (ENSCCAG00000022420) CCNI (ENSCCAG00000031183) ENSCCAG00000017680 CCNG2 (ENSCCAG00000024298) Bolivian squirrel monkey MODERN SPECIES 51 STBD1 (ENSSBOG00000030295) CCDC158 (ENSSBOG00000033721) ENSSBOG00000021934 ENSSBOG00000033914 ##22 SHROOM3 (ENSSBOG00000018112) SEPTIN11 (ENSSBOG00000020488) ENSSBOG00000025539 CCNI (ENSSBOG00000035507) ENSSBOG00000035303 ENSSBOG00000017033 CCNG2 (ENSSBOG00000020531) ENSSBOG00000020872 ENSSBOG00000020463 ENSSBOG00000034318 CXCL13 (ENSSBOG00000027580) CNOT6L (ENSSBOG00000028521) ENSSBOG00000005784 ENSSBOG00000020474 FRAS1 (ENSSBOG00000034612) Cebidae_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.w.b.b ##22 Capuchin MODERN SPECIES 646 ENSCCAG00000026423 ##22 ENSCCAG00000019949 SMURF2 (ENSCCAG00000026224) CEP95 (ENSCCAG00000028848) DDX5 (ENSCCAG00000037932) POLG2 (ENSCCAG00000025697) MILR1 (ENSCCAG00000020692) PECAM1 (ENSCCAG00000020075) TEX2 (ENSCCAG00000021956) ERN1 (ENSCCAG00000034845) ICAM2 (ENSCCAG00000029456) PRR29 (ENSCCAG00000022228) SCN4A (ENSCCAG00000030050) ENSCCAG00000020048 ENSCCAG00000024776 Euarchontoglires_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k ##22 Tree shrew MODERN SPECIES 5459 ENSTBEG00000016800 ##22 ENSTBEG00000016902 ENSTBEG00000017310 Glires ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k ##22 Lagomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k ##22 Rabbit MODERN SPECIES MTMR2 (ENSOCUG00000014568) MAML2 (ENSOCUG00000010820) CCDC82 (ENSOCUG00000007312) JRKL (ENSOCUG00000024211) ENSOCUG00000026047 ENSOCUG00000032795 ENSOCUG00000033547 ENSOCUG00000037475 ENSOCUG00000036924 CNTN5 (ENSOCUG00000015047) ENSOCUG00000007222 ENSOCUG00000037422 ARHGAP42 (ENSOCUG00000006927) PGR (ENSOCUG00000014693) TRPC6 (ENSOCUG00000017832) ENSOCUG00000024698 ##22 ENSOCUG00000026522 ANGPTL5 (ENSOCUG00000029200) CEP126 (ENSOCUG00000000342) ENSOCUG00000035862 ENSOCUG00000034665 ENSOCUG00000033152 CFAP300 (ENSOCUG00000006104) ENSOCUG00000038245 YAP1 (ENSOCUG00000025834) ENSOCUG00000034499 BIRC3 (ENSOCUG00000010109) BIRC2 (ENSOCUG00000013890) ENSOCUG00000006165 MMP7 (ENSOCUG00000015329) MMP20 (ENSOCUG00000002930) Rodentia DUPLICATION Rodentia DUPLICATION Rodentia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.x.a ##22 Rodentia_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.x.a ##22 Kangaroo rat DUPLICATION Kangaroo rat MODERN SPECIES 324 ENSDORG00000024689 Ube2e3 (ENSDORG00000029942) Itga4 (ENSDORG00000002412) ENSDORG00000002419 Neurod1 (ENSDORG00000023645) Itprid2 (ENSDORG00000011182) Ppp1r1c (ENSDORG00000014390) Pde1a (ENSDORG00000000875) Dnajc10 (ENSDORG00000004387) Frzb (ENSDORG00000002556) Nckap1 (ENSDORG00000008061) Dusp19 (ENSDORG00000015309) Nup35 (ENSDORG00000010458) Zfp804a (ENSDORG00000011876) Fsip2 (ENSDORG00000027688) ENSDORG00000028289 ##22 ENSDORG00000011664 Itgav (ENSDORG00000002530) Fam171b (ENSDORG00000024639) Zswim2 (ENSDORG00000008944) Calcrl (ENSDORG00000015372) Tfpi (ENSDORG00000009087) ENSDORG00000026421 Gulp1 (ENSDORG00000016486) Col3a1 (ENSDORG00000012004) Col5a2 (ENSDORG00000012008) ENSDORG00000023285 Wdr75 (ENSDORG00000011408) Slc40a1 (ENSDORG00000009713) ENSDORG00000025752 Ankar (ENSDORG00000000331) Kangaroo rat MODERN SPECIES 653 ENSDORG00000025764 ##22 Rodentia_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.x.a ##22 Hystricomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.x.a ##22 Hystricomorpha_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.x.a ##22 Hystricomorpha_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.x.a ##22 Long-tailed chinchilla MODERN SPECIES 126 TXN (ENSCLAG00000012680) C9orf152 (ENSCLAG00000013271) PALM2AKAP2 (ENSCLAG00000012201) ENSCLAG00000013097 PTPN3 (ENSCLAG00000014274) EPB41L4B (ENSCLAG00000013753) FRRS1L (ENSCLAG00000011370) TMEM245 (ENSCLAG00000016549) CTNNAL1 (ENSCLAG00000012596) ABITRAM (ENSCLAG00000014447) ELP1 (ENSCLAG00000015454) ACTL7A (ENSCLAG00000010320) ACTL7B (ENSCLAG00000017861) KLF4 (ENSCLAG00000010034) RAD23B (ENSCLAG00000010897) ENSCLAG00000011424 ##22 ZNF462 (ENSCLAG00000016925) TMEM38B (ENSCLAG00000014738) TAL2 (ENSCLAG00000012271) FKTN (ENSCLAG00000010039) FSD1L (ENSCLAG00000010824) SLC44A1 (ENSCLAG00000015036) ABCA1 (ENSCLAG00000015148) ENSCLAG00000012516 ENSCLAG00000013135 OR13D1 (ENSCLAG00000017813) ENSCLAG00000018070 OR13F1 (ENSCLAG00000017722) SMC2 (ENSCLAG00000010498) GRIN3A (ENSCLAG00000009983) ENSCLAG00000012103 Rodentia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.x.b ##22 Rodentia_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.x.b ##22 Hystricomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.x.b ##22 Naked mole-rat female DUPLICATION Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 22 ENSHGLG00000035939 ENSHGLG00000004553 ENSHGLG00000004699 ENSHGLG00000005496 ENSHGLG00000032785 ENSHGLG00000043622 ENSHGLG00000048169 ENSHGLG00000041709 GALNT13 (ENSHGLG00000008663) RPRM (ENSHGLG00000020667) ENSHGLG00000034456 ENSHGLG00000041977 ENSHGLG00000041758 ARL6IP6 (ENSHGLG00000047268) ENSHGLG00000036357 ENSHGLG00000047580 ##22 ENSHGLG00000037717 ENSHGLG00000049887 ENSHGLG00000005180 ENSHGLG00000014840 #26 ENSHGLG00000015684 FAM168B (ENSHGLG00000049252) #27 ENSHGLG00000032060 ENSHGLG00000012881 #28 AMER3 (ENSHGLG00000034065) #29 ENSHGLG00000046018 ENSHGLG00000007928 ENSHGLG00000043426 PTPN18 (ENSHGLG00000005084) ENSHGLG00000017709 ENSHGLG00000042115 Naked mole-rat female MODERN SPECIES 15 ENSHGLG00000018743 KIF22 (ENSHGLG00000006818) ZG16 (ENSHGLG00000036562) ENSHGLG00000039629 QPRT (ENSHGLG00000040784) SPN (ENSHGLG00000043525) CD2BP2 (ENSHGLG00000040276) ENSHGLG00000006622 MYL11 (ENSHGLG00000008497) ZNF48 (ENSHGLG00000036120) ZNF771 (ENSHGLG00000013901) DCTPP1 (ENSHGLG00000033248) ENSHGLG00000044740 ENSHGLG00000010958 ENSHGLG00000032613 ENSHGLG00000039517 ##22 ITGAL (ENSHGLG00000012206) ZNF768 (ENSHGLG00000010373) ENSHGLG00000042110 ZNF688 (ENSHGLG00000048281) ENSHGLG00000044995 ZNF689 (ENSHGLG00000009540) PRR14 (ENSHGLG00000010831) FBRS (ENSHGLG00000013553) SRCAP (ENSHGLG00000009981) ENSHGLG00000011528 ENSHGLG00000039509 CFAP119 (ENSHGLG00000012110) RNF40 (ENSHGLG00000009552) ZNF629 (ENSHGLG00000035627) ENSHGLG00000012095 Naked mole-rat female MODERN SPECIES 14 ENSHGLG00000042791 ENSHGLG00000015021 ENSHGLG00000016807 ENSHGLG00000044728 ZNF451 (ENSHGLG00000018721) ENSHGLG00000018722 RAB23 (ENSHGLG00000013030) ENSHGLG00000033625 ENSHGLG00000045680 PRIM2 (ENSHGLG00000017861) ENSHGLG00000021239 ENSHGLG00000037395 ENSHGLG00000048730 ENSHGLG00000021044 ENSHGLG00000045903 ENSHGLG00000021048 ##22 ENSHGLG00000037111 ENSHGLG00000017228 ENSHGLG00000015997 ENSHGLG00000033577 ENSHGLG00000018022 ENSHGLG00000040164 ENSHGLG00000035645 ENSHGLG00000049770 ENSHGLG00000033828 Rodentia_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.x.b ##22 Kangaroo rat DUPLICATION Kangaroo rat MODERN SPECIES 365 ENSDORG00000023527 Slc1a2 (ENSDORG00000014749) ENSDORG00000014748 Pdhx (ENSDORG00000006342) Apip (ENSDORG00000006346) Ehf (ENSDORG00000007642) Elf5 (ENSDORG00000029279) Cat (ENSDORG00000007636) Abtb2 (ENSDORG00000006572) Nat10 (ENSDORG00000006567) Caprin1 (ENSDORG00000006566) Lmo2 (ENSDORG00000010406) Fbxo3 (ENSDORG00000008866) ENSDORG00000026857 A930018P22Rik (ENSDORG00000008868) ENSDORG00000024985 ##22 D430041D05Rik (ENSDORG00000012272) Hipk3 (ENSDORG00000008654) Cstf3 (ENSDORG00000005898) Tcp11l1 (ENSDORG00000005896) Depdc7 (ENSDORG00000006010) Qser1 (ENSDORG00000011190) Prrg4 (ENSDORG00000011188) Ccdc73 (ENSDORG00000004144) ENSDORG00000004141 Wt1 (ENSDORG00000013725) Them7 (ENSDORG00000029154) Rcn1 (ENSDORG00000006013) ENSDORG00000025302 Pax6 (ENSDORG00000000254) Elp4 (ENSDORG00000000252) Kangaroo rat MODERN SPECIES 332 Otor (ENSDORG00000003951) Snrpb2 (ENSDORG00000027524) Kif16b (ENSDORG00000005792) Macrod2 (ENSDORG00000016317) ENSDORG00000024068 Flrt3 (ENSDORG00000009346) Sel1l2 (ENSDORG00000016316) Ndufaf5 (ENSDORG00000016314) Esf1 (ENSDORG00000016313) Tasp1 (ENSDORG00000011134) Ism1 (ENSDORG00000030172) Sptlc3 (ENSDORG00000010161) Btbd3 (ENSDORG00000005643) ENSDORG00000027494 ##22 ENSDORG00000028911 Jag1 (ENSDORG00000005289) Mkks (ENSDORG00000003525) Snap25 (ENSDORG00000000926) Ankef1 (ENSDORG00000010467) ENSDORG00000025342 ENSDORG00000024804 Lamp5 (ENSDORG00000015284) Plcb4 (ENSDORG00000015276) Plcb1 (ENSDORG00000007949) ENSDORG00000024865 Hao1 (ENSDORG00000011791) ENSDORG00000023360 Bmp2 (ENSDORG00000010717) Fermt1 (ENSDORG00000004087) Rodentia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y ##22 Rodentia_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y ##22 Hystricomorpha DUPLICATION Hystricomorpha DUPLICATION Hystricomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.a.a ##22 Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 11 ENSHGLG00000038797 ENSHGLG00000047775 RPS29 (ENSHGLG00000033323) ENSHGLG00000013547 ENSHGLG00000035140 MGAT2 (ENSHGLG00000020857) ENSHGLG00000010009 ENSHGLG00000032032 POLE2 (ENSHGLG00000015308) KLHDC1 (ENSHGLG00000014487) KLHDC2 (ENSHGLG00000014323) NEMF (ENSHGLG00000014110) ARF6 (ENSHGLG00000040454) ENSHGLG00000012671 METTL21D (ENSHGLG00000011833) ENSHGLG00000044017 ##22 SOS2 (ENSHGLG00000011807) L2HGDH (ENSHGLG00000010171) DMAC2L (ENSHGLG00000042464) CDKL1 (ENSHGLG00000042701) ENSHGLG00000007162 MAP4K5 (ENSHGLG00000011509) ATL1 (ENSHGLG00000017094) ENSHGLG00000014486 ENSHGLG00000039372 NIN (ENSHGLG00000010798) ABHD12B (ENSHGLG00000017092) PYGL (ENSHGLG00000011923) TRIM9 (ENSHGLG00000011753) TMX1 (ENSHGLG00000012700) ENSHGLG00000046758 Naked mole-rat female MODERN SPECIES 7 ENSHGLG00000050232 ENSHGLG00000000456 ENSHGLG00000020198 ENSHGLG00000000603 ALOX5 (ENSHGLG00000000545) MARCHF8 (ENSHGLG00000032576) ENSHGLG00000034580 ENSHGLG00000037312 ENSHGLG00000020003 ENSHGLG00000042445 ENSHGLG00000036532 ENSHGLG00000040895 ENSHGLG00000039819 ENSHGLG00000036796 ENSHGLG00000005172 ENSHGLG00000020126 ##22 ENSHGLG00000047629 GLUD1 (ENSHGLG00000006984) FAM25C (ENSHGLG00000044226) SNCG (ENSHGLG00000007942) ENSHGLG00000008259 ENSHGLG00000004727 ENSHGLG00000039539 ENSHGLG00000001658 ENSHGLG00000001532 LRRC18 (ENSHGLG00000001458) WDFY4 (ENSHGLG00000001195) VSTM4 (ENSHGLG00000001022) FAM170B (ENSHGLG00000045738) C10orf71 (ENSHGLG00000020256) DRGX (ENSHGLG00000033413) Hystricomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.a.b ##22 Naked mole-rat female MODERN SPECIES RNGTT (ENSHGLG00000001236) ENSHGLG00000015644 PNRC1 (ENSHGLG00000046639) SRSF12 (ENSHGLG00000040221) ENSHGLG00000041782 PM20D2 (ENSHGLG00000001085) GABRR1 (ENSHGLG00000001027) ENSHGLG00000032006 GABRR2 (ENSHGLG00000003533) UBE2J1 (ENSHGLG00000048368) RRAGD (ENSHGLG00000003346) ANKRD6 (ENSHGLG00000002709) ENSHGLG00000003248 ENSHGLG00000002586 MDN1 (ENSHGLG00000001674) ENSHGLG00000038671 ##22 ENSHGLG00000050644 ENSHGLG00000001206 ENSHGLG00000001026 ENSHGLG00000038632 ENSHGLG00000045458 ENSHGLG00000013158 ENSHGLG00000020995 ENSHGLG00000011705 ENSHGLG00000001408 MANEA (ENSHGLG00000000715) ENSHGLG00000036171 ENSHGLG00000003809 ENSHGLG00000046415 FUT9 (ENSHGLG00000043577) ENSHGLG00000019575 Hystricomorpha_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.a.b ##22 Hystricomorpha_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.a.b ##22 Degu MODERN SPECIES 195 ENSODEG00000001472 ENSODEG00000001490 OC90 (ENSODEG00000000471) HHLA1 (ENSODEG00000000496) KCNQ3 (ENSODEG00000000541) ENSODEG00000000570 ENSODEG00000000588 TG (ENSODEG00000000627) SLA (ENSODEG00000000727) CCN4 (ENSODEG00000000809) NDRG1 (ENSODEG00000000856) ST3GAL1 (ENSODEG00000000971) ENSODEG00000018742 ZFAT (ENSODEG00000000357) KHDRBS3 (ENSODEG00000000682) ENSODEG00000018657 ##22 Hystricomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.b ##22 Naked mole-rat female MODERN SPECIES 23 ENSHGLG00000033167 ENSHGLG00000008927 ENSHGLG00000019124 ENSHGLG00000014739 ENSHGLG00000013824 INSYN2B (ENSHGLG00000014358) ENSHGLG00000034286 FOXI1 (ENSHGLG00000014218) C5orf58 (ENSHGLG00000046006) LCP2 (ENSHGLG00000014106) KCNIP1 (ENSHGLG00000013570) GABRP (ENSHGLG00000033733) ENSHGLG00000035784 RANBP17 (ENSHGLG00000014605) TLX3 (ENSHGLG00000014254) ENSHGLG00000015459 ##22 NPM1 (ENSHGLG00000013669) FGF18 (ENSHGLG00000049396) ENSHGLG00000040705 SMIM23 (ENSHGLG00000009367) ENSHGLG00000032517 FBXW11 (ENSHGLG00000010874) ENSHGLG00000048340 STK10 (ENSHGLG00000007426) EFCAB9 (ENSHGLG00000006358) UBTD2 (ENSHGLG00000044520) SH3PXD2B (ENSHGLG00000009542) NEURL1B (ENSHGLG00000039883) DUSP1 (ENSHGLG00000012633) ERGIC1 (ENSHGLG00000050911) ENSHGLG00000017100 Hystricomorpha_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.b ##22 Hystricomorpha_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.b ##22 Degu DUPLICATION Degu DUPLICATION Degu MODERN SPECIES 163 SLC25A30 (ENSODEG00000005522) COG3 (ENSODEG00000006373) CBY2 (ENSODEG00000007190) SIAH3 (ENSODEG00000006861) ZC3H13 (ENSODEG00000005178) CPB2 (ENSODEG00000005426) ENSODEG00000007562 AKAP11 (ENSODEG00000006558) DGKH (ENSODEG00000006365) ENSODEG00000006776 ENSODEG00000019318 ENSODEG00000019364 ENSODEG00000005696 VWA8 (ENSODEG00000006290) RGCC (ENSODEG00000005723) ENSODEG00000006513 ##22 MTRF1 (ENSODEG00000005782) KBTBD7 (ENSODEG00000019293) ENSODEG00000004948 WBP4 (ENSODEG00000005811) ENSODEG00000005378 ELF1 (ENSODEG00000005272) ENSODEG00000005242 ENSODEG00000005825 Degu MODERN SPECIES 51 ENSODEG00000017380 CUZD1 (ENSODEG00000017550) C10orf88 (ENSODEG00000017572) PSTK (ENSODEG00000017417) ENSODEG00000017599 ACADSB (ENSODEG00000017347) HMX3 (ENSODEG00000017303) HMX2 (ENSODEG00000017125) ENSODEG00000017376 ENSODEG00000020472 GPR26 (ENSODEG00000017488) CPXM2 (ENSODEG00000017290) CHST15 (ENSODEG00000017382) ENSODEG00000017605 ENSODEG00000017421 ENSODEG00000017371 ##22 NKX1-2 (ENSODEG00000017123) LHPP (ENSODEG00000017592) FAM53B (ENSODEG00000017219) EEF1AKMT2 (ENSODEG00000017201) ENSODEG00000020434 ENSODEG00000017504 ZRANB1 (ENSODEG00000017463) ENSODEG00000017299 ENSODEG00000020429 EDRF1 (ENSODEG00000017549) ENSODEG00000017340 ENSODEG00000017669 BCCIP (ENSODEG00000017275) DHX32 (ENSODEG00000017305) ENSODEG00000020420 Degu MODERN SPECIES 237 NDST3 (ENSODEG00000009516) PRSS12 (ENSODEG00000011205) ENSODEG00000010268 ##22 ENSODEG00000008761 SEC24D (ENSODEG00000009782) ENSODEG00000009862 SYNPO2 (ENSODEG00000008964) MYOZ2 (ENSODEG00000010060) C4orf3 (ENSODEG00000009429) ENSODEG00000009751 FABP2 (ENSODEG00000009356) PDE5A (ENSODEG00000009775) ENSODEG00000009724 ENSODEG00000009337 MAD2L1 (ENSODEG00000008659) PRDM5 (ENSODEG00000009133) NDNF (ENSODEG00000008963) ENSODEG00000009181 Long-tailed chinchilla DUPLICATION Long-tailed chinchilla MODERN SPECIES 109 ABHD3 (ENSCLAG00000009009) SNRPD1 (ENSCLAG00000008691) ESCO1 (ENSCLAG00000007066) GREB1L (ENSCLAG00000009372) ROCK1 (ENSCLAG00000012548) USP14 (ENSCLAG00000008514) THOC1 (ENSCLAG00000009117) COLEC12 (ENSCLAG00000008952) CETN1 (ENSCLAG00000017717) CLUL1 (ENSCLAG00000011935) TYMS (ENSCLAG00000011426) ENOSF1 (ENSCLAG00000008600) YES1 (ENSCLAG00000007748) ADCYAP1 (ENSCLAG00000007209) ENSCLAG00000007052 ENSCLAG00000011958 ##22 METTL4 (ENSCLAG00000011739) NDC80 (ENSCLAG00000011120) SMCHD1 (ENSCLAG00000008351) EMILIN2 (ENSCLAG00000007221) LPIN2 (ENSCLAG00000016431) MYOM1 (ENSCLAG00000009876) MYL12A (ENSCLAG00000011666) MYL12B (ENSCLAG00000008854) TGIF1 (ENSCLAG00000008448) DLGAP1 (ENSCLAG00000007165) AKAIN1 (ENSCLAG00000012253) ZBTB14 (ENSCLAG00000015733) EPB41L3 (ENSCLAG00000009191) ARHGAP28 (ENSCLAG00000009327) LAMA1 (ENSCLAG00000016313) Long-tailed chinchilla DUPLICATION Long-tailed chinchilla MODERN SPECIES 167 EIF3B (ENSCLAG00000006140) ZNF12 (ENSCLAG00000007714) ZNF316 (ENSCLAG00000004965) ZNF853 (ENSCLAG00000005585) INTS15 (ENSCLAG00000005799) ZDHHC4 (ENSCLAG00000005882) GRID2IP (ENSCLAG00000004690) KDELR2 (ENSCLAG00000008164) DAGLB (ENSCLAG00000010405) ENSCLAG00000014915 RAC1 (ENSCLAG00000009375) ENSCLAG00000006763 ENSCLAG00000007013 ENSCLAG00000007268 USP42 (ENSCLAG00000004585) ENSCLAG00000006764 ##22 EIF2AK1 (ENSCLAG00000007600) ANKRD61 (ENSCLAG00000008441) AIMP2 (ENSCLAG00000009734) ENSCLAG00000009853 ENSCLAG00000004477 ENSCLAG00000006812 ENSCLAG00000007617 LMTK2 (ENSCLAG00000005806) BHLHA15 (ENSCLAG00000006581) TECPR1 (ENSCLAG00000006941) BRI3 (ENSCLAG00000012095) BAIAP2L1 (ENSCLAG00000013528) NPTX2 (ENSCLAG00000013930) TMEM130 (ENSCLAG00000006489) TRRAP (ENSCLAG00000007110) Long-tailed chinchilla MODERN SPECIES 253 ENSCLAG00000002514 ENSCLAG00000002603 ##22 ENSCLAG00000002730 ENSCLAG00000002130 ZNF25 (ENSCLAG00000002272) ENSCLAG00000002314 ZNF248 (ENSCLAG00000002382) BMS1 (ENSCLAG00000002446) RET (ENSCLAG00000001797) CSGALNACT2 (ENSCLAG00000002183) RASGEF1A (ENSCLAG00000003940) FXYD4 (ENSCLAG00000004317) HNRNPF (ENSCLAG00000005161) ENSCLAG00000005207 ZNF32 (ENSCLAG00000005299) CXCL12 (ENSCLAG00000005470) ENSCLAG00000005514 Guinea pig DUPLICATION Guinea pig MODERN SPECIES 76 ENSCPOG00000038826 ##22 JPT1 (ENSCPOG00000037777) ARMC7 (ENSCPOG00000035442) NT5C (ENSCPOG00000035857) SLC16A5 (ENSCPOG00000004024) ENSCPOG00000024202 KCTD2 (ENSCPOG00000026646) ATP5PD (ENSCPOG00000033373) MRPL58 (ENSCPOG00000033171) CDR2L (ENSCPOG00000033907) HID1 (ENSCPOG00000003963) OTOP3 (ENSCPOG00000040627) OTOP2 (ENSCPOG00000019663) USH1G (ENSCPOG00000005734) FADS6 (ENSCPOG00000024052) FDXR (ENSCPOG00000025246) Guinea pig DUPLICATION Guinea pig MODERN SPECIES 190 EVPL (ENSCPOG00000011545) SRP68 (ENSCPOG00000009121) EXOC7 (ENSCPOG00000005424) FOXJ1 (ENSCPOG00000035134) RNF157 (ENSCPOG00000000794) UBALD2 (ENSCPOG00000038214) ENSCPOG00000005032 PRPSAP1 (ENSCPOG00000004639) SPHK1 (ENSCPOG00000012191) UBE2O (ENSCPOG00000012196) AANAT (ENSCPOG00000038827) RHBDF2 (ENSCPOG00000009889) CYGB (ENSCPOG00000035923) PRCD (ENSCPOG00000031923) ST6GALNAC2 (ENSCPOG00000027529) ENSCPOG00000032161 ##22 Guinea pig MODERN SPECIES 371 ENSCPOG00000031380 ##22 Guinea pig MODERN SPECIES 67 ENSCPOG00000036767 ADM (ENSCPOG00000030696) AMPD3 (ENSCPOG00000007799) RNF141 (ENSCPOG00000037000) LYVE1 (ENSCPOG00000030456) IRAG1 (ENSCPOG00000022784) CTR9 (ENSCPOG00000009018) EIF4G2 (ENSCPOG00000009036) ZBED5 (ENSCPOG00000031247) GALNT18 (ENSCPOG00000006859) USP47 (ENSCPOG00000006461) DKK3 (ENSCPOG00000006479) MICAL2 (ENSCPOG00000003493) ENSCPOG00000003851 PARVA (ENSCPOG00000003322) ENSCPOG00000032772 ##22 TEAD1 (ENSCPOG00000001830) RASSF10 (ENSCPOG00000003185) BMAL1 (ENSCPOG00000008795) ENSCPOG00000024984 PTH (ENSCPOG00000003894) ENSCPOG00000002654 SPON1 (ENSCPOG00000001095) RRAS2 (ENSCPOG00000033943) COPB1 (ENSCPOG00000015221) PSMA1 (ENSCPOG00000015226) PDE3B (ENSCPOG00000014511) CYP2R1 (ENSCPOG00000015305) ENSCPOG00000009939 ENSCPOG00000034508 INSC (ENSCPOG00000009748) Sciuridae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y ##22 Marmotini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y ##22 Alpin marmot MODERN SPECIES 65 KLHL6 (ENSMMMG00000006081) #31 ENSMMMG00000006096 KLHL24 (ENSMMMG00000006106) #32 YEATS2 (ENSMMMG00000006116) #33 MAP6D1 (ENSMMMG00000006183) #34 PARL (ENSMMMG00000006194) #35 ENSMMMG00000006241 ##22 ENSMMMG00000006246 ABCC5 (ENSMMMG00000006275) EIF2B5 (ENSMMMG00000006358) DVL3 (ENSMMMG00000006390) AP2M1 (ENSMMMG00000006465) ABCF3 (ENSMMMG00000006539) VWA5B2 (ENSMMMG00000006578) ALG3 (ENSMMMG00000006608) EEF1AKMT4 (ENSMMMG00000006671) ECE2 (ENSMMMG00000006677) PSMD2 (ENSMMMG00000006803) EIF4G1 (ENSMMMG00000006821) FAM131A (ENSMMMG00000007631) CLCN2 (ENSMMMG00000007660) POLR2H (ENSMMMG00000007825) Marmotini_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y ##22 Arctic ground squirrel MODERN SPECIES 67 KLHL6 (ENSUPAG00010003958) #31 ENSUPAG00010003949 KLHL24 (ENSUPAG00010003926) #32 ENSUPAG00010003918 YEATS2 (ENSUPAG00010003780) #33 MAP6D1 (ENSUPAG00010003771) #34 ENSUPAG00010003758 ##22 PARL (ENSUPAG00010003727) #35 ENSUPAG00010003684 ABCC5 (ENSUPAG00010003605) EIF2B5 (ENSUPAG00010003579) DVL3 (ENSUPAG00010003477) ENSUPAG00010003469 ABCF3 (ENSUPAG00010003427) VWA5B2 (ENSUPAG00010003400) ALG3 (ENSUPAG00010003339) EEF1AKMT4 (ENSUPAG00010003328) CAMK2N2 (ENSUPAG00010003323) ECE2 (ENSUPAG00010003253) PSMD2 (ENSUPAG00010003228) EIF4G1 (ENSUPAG00010002903) FAM131A (ENSUPAG00010002887) Squirrel MODERN SPECIES 145 TAFA2 (ENSSTOG00000033207) USP15 (ENSSTOG00000028998) MON2 (ENSSTOG00000001356) PPM1H (ENSSTOG00000001377) AVPR1A (ENSSTOG00000026613) ENSSTOG00000023231 ENSSTOG00000005600 ENSSTOG00000029685 ##22 RXYLT1 (ENSSTOG00000004493) SRGAP1 (ENSSTOG00000004509) KICS2 (ENSSTOG00000004546) C12orf56 (ENSSTOG00000027823) XPOT (ENSSTOG00000021805) TBK1 (ENSSTOG00000008299) RASSF3 (ENSSTOG00000013961) GNS (ENSSTOG00000013964) TBC1D30 (ENSSTOG00000013976) ENSSTOG00000022313 WIF1 (ENSSTOG00000028030) LEMD3 (ENSSTOG00000013995) MSRB3 (ENSSTOG00000014011) ENSSTOG00000034254 HMGA2 (ENSSTOG00000026964) Rodentia_B DUPLICATION Rodentia_B DUPLICATION Rodentia_B DUPLICATION Rodentia_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.c.a.a ##22 Myomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.c.a.a ##22 Muroidea ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.c.a.a ##22 Muroidea_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.c.a.a ##22 Murinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.c.a.a ##22 Mus ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.c.a.a ##22 Mus_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.c.a.a ##22 Mus_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.c.a.a ##22 Mus_C ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.c.a.a ##22 Steppe mouse MODERN SPECIES 3065 Kcnn2 (ENSMSIG00000024271) ENSMSIG00000024257 ##22 Ythdc2 (ENSMSIG00000024215) Mcc (ENSMSIG00000024099) Dcp2 (ENSMSIG00000024069) Myot (ENSMSIG00000024044) Npy6r (ENSMSIG00000024040) ENSMSIG00000024032 Spink11 (ENSMSIG00000024013) Spinkl (ENSMSIG00000024003) Gm10267 (ENSMSIG00000023996) Gm37797 (ENSMSIG00000023990) Spink12 (ENSMSIG00000023981) Spink6 (ENSMSIG00000023972) Spink14 (ENSMSIG00000023957) Spink5 (ENSMSIG00000023899) Gm94 (ENSMSIG00000023887) Rodentia_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.c.a.b ##22 Kangaroo rat MODERN SPECIES 327 ENSDORG00000001088 Klb (ENSDORG00000005905) Rfc1 (ENSDORG00000010527) Wdr19 (ENSDORG00000010525) Klhl5 (ENSDORG00000010524) ENSDORG00000010522 Fam114a1 (ENSDORG00000010517) Klf3 (ENSDORG00000023213) Tbc1d1 (ENSDORG00000010269) Pgm2 (ENSDORG00000027647) Rell1 (ENSDORG00000008354) 0610040J01Rik (ENSDORG00000011992) Nwd2 (ENSDORG00000023758) Dthd1 (ENSDORG00000001578) Arap2 (ENSDORG00000008160) ENSDORG00000028110 ##22 Pcdh7 (ENSDORG00000029117) ENSDORG00000008260 ENSDORG00000028755 Stim2 (ENSDORG00000016610) Tbc1d19 (ENSDORG00000013790) Cckar (ENSDORG00000006353) Rbpj (ENSDORG00000006352) Smim20 (ENSDORG00000028531) Sel1l3 (ENSDORG00000011773) Slc34a2 (ENSDORG00000016105) ENSDORG00000025086 ENSDORG00000012901 Pi4k2b (ENSDORG00000000491) Sepsecs (ENSDORG00000012655) Lgi2 (ENSDORG00000005632) Myomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.c.a.b ##22 Muroidea ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.c.a.b ##22 Muroidea_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.c.a.b ##22 Murinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.c.a.b ##22 Mus ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.c.a.b ##22 Mus_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.c.a.b ##22 Mus_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.c.a.b ##22 Mus_C ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.c.a.b ##22 Steppe mouse DUPLICATION Steppe mouse MODERN SPECIES 1998 ENSMSIG00000002978 ENSMSIG00000003001 ENSMSIG00000003022 ##22 Steppe mouse MODERN SPECIES 3157 Or1j10 (ENSMSIG00000001528) ENSMSIG00000001510 ##22 Or1j11 (ENSMSIG00000001495) Or1j12 (ENSMSIG00000001487) Or1j13 (ENSMSIG00000001476) Or1j14 (ENSMSIG00000001466) Or1j17 (ENSMSIG00000001457) Or1j18 (ENSMSIG00000001448) Or1j19 (ENSMSIG00000001441) Or1j21 (ENSMSIG00000001432) Or1j1 (ENSMSIG00000001425) Or1j4 (ENSMSIG00000001405) Or1n1 (ENSMSIG00000001397) Or1n1b (ENSMSIG00000001363) Or1n2 (ENSMSIG00000001355) Or1l8 (ENSMSIG00000001344) Or1ak2 (ENSMSIG00000001333) Rat MODERN SPECIES 15 ENSRNOG00000063427 ENSRNOG00000064844 Pcmtd1 (ENSRNOG00000005730) AABR07046956.1 (ENSRNOG00000040219) St18 (ENSRNOG00000006200) Alkal1 (ENSRNOG00000048703) Rb1cc1 (ENSRNOG00000006833) Npbwr1 (ENSRNOG00000007640) Oprk1 (ENSRNOG00000007647) Atp6v1h (ENSRNOG00000030862) Rgs20 (ENSRNOG00000008100) Tcea1 (ENSRNOG00000022323) Lypla1 (ENSRNOG00000008320) Mrpl15 (ENSRNOG00000008566) Sox17 (ENSRNOG00000027357) Sumo4 (ENSRNOG00000069967) ##22 ENSRNOG00000065942 Rp1 (ENSRNOG00000008807) Cyld-ps1 (ENSRNOG00000008861) Xkr4 (ENSRNOG00000027276) Tmem68 (ENSRNOG00000008872) Tgs1 (ENSRNOG00000008156) Lyn (ENSRNOG00000008180) Rps20-ps10 (ENSRNOG00000008555) Mos (ENSRNOG00000008567) LOC100364265 (ENSRNOG00000012088) Plag1 (ENSRNOG00000008846) Chchd7 (ENSRNOG00000031769) Sdr16c5 (ENSRNOG00000008871) Sdr16c6 (ENSRNOG00000040151) Sdr16c6 (ENSRNOG00000067216) Cricetidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.c.a.b ##22 Cricetinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.c.a.b ##22 Chinese hamster chok1gshd MODERN SPECIES 121 ENSCGRG00001012550 ENSCGRG00001001579 ENSCGRG00001009002 ENSCGRG00001009098 ENSCGRG00001012324 ENSCGRG00001009981 ENSCGRG00001007419 Defb1 (ENSCGRG00001004865) ENSCGRG00001016206 ENSCGRG00001023090 Xkr5 (ENSCGRG00001023928) Agpat5 (ENSCGRG00001018734) Angpt2 (ENSCGRG00001023150) Mcph1 (ENSCGRG00001003438) Csmd1 (ENSCGRG00001000546) ENSCGRG00001007648 ##22 Myom2 (ENSCGRG00001017603) Kbtbd11 (ENSCGRG00001010506) Arhgef10 (ENSCGRG00001004556) Cln8 (ENSCGRG00001005528) Dlgap2 (ENSCGRG00001024911) ENSCGRG00001015988 Erich1 (ENSCGRG00001014658) Tdrp (ENSCGRG00001009331) Fbxo25 (ENSCGRG00001022186) Coprs (ENSCGRG00001021740) Champ1 (ENSCGRG00001010456) Upf3a (ENSCGRG00001017387) Cdc16 (ENSCGRG00001006545) ENSCGRG00001000063 Rasa3 (ENSCGRG00001018123) Rodentia_B DUPLICATION Rodentia_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.c.b.a ##22 Kangaroo rat MODERN SPECIES 330 Rab27a (ENSDORG00000029758) Pigb (ENSDORG00000004237) Ccpg1 (ENSDORG00000028418) Pierce2 (ENSDORG00000029919) Dnaaf4 (ENSDORG00000012067) Pygo1 (ENSDORG00000028210) Prtg (ENSDORG00000012398) Nedd4 (ENSDORG00000008857) Rfx7 (ENSDORG00000024632) ENSDORG00000004539 Mns1 (ENSDORG00000004541) Zfp280d (ENSDORG00000010891) Tcf12 (ENSDORG00000007054) Cgnl1 (ENSDORG00000026162) Myzap (ENSDORG00000015312) ENSDORG00000026281 ##22 Aldh1a2 (ENSDORG00000011893) Aqp9 (ENSDORG00000007593) Adam10 (ENSDORG00000007459) Mindy2 (ENSDORG00000007461) Sltm (ENSDORG00000007463) Rnf111 (ENSDORG00000006942) Ccnb2 (ENSDORG00000006944) Myo1e (ENSDORG00000008506) ENSDORG00000008945 Gcnt3 (ENSDORG00000005165) Gtf2a2 (ENSDORG00000007867) Bnip2 (ENSDORG00000009318) ENSDORG00000029842 Foxb1 (ENSDORG00000027835) ENSDORG00000024092 Myomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.c.b.a ##22 Lesser Egyptian jerboa MODERN SPECIES 173 Brwd3 (ENSJJAG00000022949) ENSJJAG00000021895 ENSJJAG00000022040 Pou3f4 (ENSJJAG00000012452) ENSJJAG00000022322 ENSJJAG00000022439 ENSJJAG00000022602 ##22 Rps6ka6 (ENSJJAG00000023727) Hdx (ENSJJAG00000004610) 4933403O08Rik (ENSJJAG00000005323) Apool (ENSJJAG00000007396) ENSJJAG00000009900 Zfp711 (ENSJJAG00000010450) Pof1b (ENSJJAG00000010917) Chm (ENSJJAG00000012459) Dach2 (ENSJJAG00000014515) ENSJJAG00000000038 Klhl4 (ENSJJAG00000000299) Rodentia_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.c.b.b ##22 Kangaroo rat MODERN SPECIES 42 ENSDORG00000024625 ##22 Rodentia_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.d ##22 Myomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.d ##22 Lesser Egyptian jerboa DUPLICATION Lesser Egyptian jerboa MODERN SPECIES 67 Ndst4 (ENSJJAG00000014513) ENSJJAG00000021020 ENSJJAG00000001081 ENSJJAG00000009441 Tram1l1 (ENSJJAG00000020762) Ndst3 (ENSJJAG00000002218) Prss12 (ENSJJAG00000012007) Mettl14 (ENSJJAG00000010557) Sec24d (ENSJJAG00000009995) Synpo2 (ENSJJAG00000012840) Myoz2 (ENSJJAG00000017680) ENSJJAG00000019057 1810037I17Rik (ENSJJAG00000014222) Fabp2 (ENSJJAG00000016393) Pde5a (ENSJJAG00000018246) ENSJJAG00000014666 ##22 Mad2l1 (ENSJJAG00000019335) Prdm5 (ENSJJAG00000011464) Ndnf (ENSJJAG00000023194) ENSJJAG00000000554 Qrfprl (ENSJJAG00000017977) Hpgds (ENSJJAG00000020796) Smarcad1 (ENSJJAG00000022342) ENSJJAG00000023468 Atoh1 (ENSJJAG00000001013) Grid2 (ENSJJAG00000010736) ENSJJAG00000011795 ENSJJAG00000012600 Ppp1r3a (ENSJJAG00000014929) ENSJJAG00000016852 Mdfic (ENSJJAG00000012683) Lesser Egyptian jerboa MODERN SPECIES 244 ENSJJAG00000011622 ENSJJAG00000000447 ##22 Muroidea ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.d ##22 Muroidea_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.d ##22 Cricetidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.d ##22 Cricetinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.d ##22 Chinese hamster chok1gshd MODERN SPECIES 188 ENSCGRG00001000890 Zeb2 (ENSCGRG00001003812) ENSCGRG00001006690 Gtdc1 (ENSCGRG00001014426) ENSCGRG00001008381 Arhgap15 (ENSCGRG00001011371) Kynu (ENSCGRG00001005556) ENSCGRG00001012428 ENSCGRG00001009004 ENSCGRG00001024491 Nxph2 (ENSCGRG00001024840) Spopl (ENSCGRG00001010346) ENSCGRG00001008614 ENSCGRG00001024843 ENSCGRG00001001542 ENSCGRG00001009248 ##22 Tbpl2 (ENSCGRG00001015310) ENSCGRG00001015320 Il36a (ENSCGRG00001005772) ENSCGRG00001008839 Il36b (ENSCGRG00001008679) Il36rn (ENSCGRG00001010036) Il1f10 (ENSCGRG00001003880) Il1rn (ENSCGRG00001005108) Psd4 (ENSCGRG00001010714) Pax8 (ENSCGRG00001017508) Cacna1b (ENSCGRG00001018788) Ehmt1 (ENSCGRG00001002035) Arrdc1 (ENSCGRG00001003052) Zmynd19 (ENSCGRG00001007529) Dph7 (ENSCGRG00001002276) Cricetidae_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.d ##22 Northern American deer mouse MODERN SPECIES 2 Arpc5 (ENSPEMG00000025109) Apobec4 (ENSPEMG00000019164) Rgl1 (ENSPEMG00000002595) Colgalt2 (ENSPEMG00000010278) Tsen15 (ENSPEMG00000012921) 1700025G04Rik (ENSPEMG00000014343) Edem3 (ENSPEMG00000020193) Niban1 (ENSPEMG00000027997) Rnf2 (ENSPEMG00000020255) ENSPEMG00000026908 Trmt1l (ENSPEMG00000000031) Swt1 (ENSPEMG00000008208) Ivns1abp (ENSPEMG00000012016) ENSPEMG00000029537 Hmcn1 (ENSPEMG00000028632) ENSPEMG00000030031 ##22 ENSPEMG00000000081 Tpr (ENSPEMG00000020078) Odr4 (ENSPEMG00000003414) Pdc (ENSPEMG00000009431) Ptgs2 (ENSPEMG00000010420) Pla2g4a (ENSPEMG00000013171) Brinp3 (ENSPEMG00000011927) ENSPEMG00000025536 Rgs18 (ENSPEMG00000023775) Rgs21 (ENSPEMG00000012866) Rgs1 (ENSPEMG00000012482) Rgs13 (ENSPEMG00000011301) Rgs2 (ENSPEMG00000008350) Uchl5 (ENSPEMG00000002439) Ro60 (ENSPEMG00000001419) Prairie vole DUPLICATION Prairie vole MODERN SPECIES Cox16 (ENSMOCG00000004091) Synj2bp (ENSMOCG00000017570) Med6 (ENSMOCG00000022028) Ttc9 (ENSMOCG00000018568) Map3k9 (ENSMOCG00000008905) Pcnx (ENSMOCG00000016626) ENSMOCG00000022199 Sipa1l1 (ENSMOCG00000020326) Rgs6 (ENSMOCG00000005512) Dpf3 (ENSMOCG00000003784) Dcaf4 (ENSMOCG00000015020) Zfyve1 (ENSMOCG00000022979) Rbm25 (ENSMOCG00000001935) ENSMOCG00000005921 Psen1 (ENSMOCG00000009775) ENSMOCG00000005015 ##22 Papln (ENSMOCG00000001461) Numb (ENSMOCG00000022280) Riox1 (ENSMOCG00000007570) Heatr4 (ENSMOCG00000015139) ENSMOCG00000005730 ENSMOCG00000021013 ENSMOCG00000005600 Acot4 (ENSMOCG00000013343) ENSMOCG00000018416 Acot5 (ENSMOCG00000000977) Acot6 (ENSMOCG00000004025) Dnal1 (ENSMOCG00000022267) Pnma1 (ENSMOCG00000006996) Mideas (ENSMOCG00000019740) Ptgr2 (ENSMOCG00000010724) Prairie vole MODERN SPECIES 218 Nme8 (ENSMOCG00000014677) Sfrp4 (ENSMOCG00000000953) Epdr1 (ENSMOCG00000004358) ENSMOCG00000011601 ##22 Stard3nl (ENSMOCG00000016111) ENSMOCG00000017132 ENSMOCG00000000589 Prairie vole MODERN SPECIES 10 ENSMOCG00000020523 Syt1 (ENSMOCG00000012503) Pawr (ENSMOCG00000019570) Ppp1r12a (ENSMOCG00000018418) Otogl (ENSMOCG00000018409) Ptprq (ENSMOCG00000017842) Myf6 (ENSMOCG00000015833) Myf5 (ENSMOCG00000017847) Lin7a (ENSMOCG00000021369) Acss3 (ENSMOCG00000012086) Ppfia2 (ENSMOCG00000007873) Ccdc59 (ENSMOCG00000006690) Mettl25 (ENSMOCG00000018000) Tmtc2 (ENSMOCG00000012479) ENSMOCG00000016887 ENSMOCG00000010194 ##22 Slc6a15 (ENSMOCG00000002838) ENSMOCG00000019991 Alx1 (ENSMOCG00000007046) Rassf9 (ENSMOCG00000010972) Nts (ENSMOCG00000000690) Mgat4c (ENSMOCG00000012409) 1700017N19Rik (ENSMOCG00000017688) 4930430F08Rik (ENSMOCG00000021234) Cep290 (ENSMOCG00000010037) Tmtc3 (ENSMOCG00000007538) Kitl (ENSMOCG00000018911) ENSMOCG00000003349 Dusp6 (ENSMOCG00000011753) Poc1b (ENSMOCG00000015822) Atp2b1 (ENSMOCG00000012513) Murinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.d ##22 Rat MODERN SPECIES 2 Fetub (ENSRNOG00000001806) Ahsg (ENSRNOG00000038370) Dnajb11 (ENSRNOG00000001803) Tbccd1 (ENSRNOG00000026458) Crygs (ENSRNOG00000038355) Dgkg (ENSRNOG00000001796) #20 Etv5 (ENSRNOG00000001785) #19 RGD1559972 (ENSRNOG00000031273) Tra2b (ENSRNOG00000001783) AABR07034641.1 (ENSRNOG00000033115) Igf2bp2 (ENSRNOG00000025946) Senp2 (ENSRNOG00000001773) Liph (ENSRNOG00000047894) Tmem41a (ENSRNOG00000046283) Map3k13 (ENSRNOG00000025423) LOC120095693 (ENSRNOG00000039674) ##22 Ehhadh (ENSRNOG00000001770) C11h3orf70 (ENSRNOG00000063811) Vps8 (ENSRNOG00000001764) Ephb3 (ENSRNOG00000031801) RGD1560559 (ENSRNOG00000025031) RGD1563956 (ENSRNOG00000025014) Chrd (ENSRNOG00000001750) Thpol1 (ENSRNOG00000046850) Polr2h (ENSRNOG00000001748) Clcn2 (ENSRNOG00000001742) Fam131a (ENSRNOG00000063031) Eif4g1 (ENSRNOG00000001738) Psmd2 (ENSRNOG00000001719) Ece2 (ENSRNOG00000001715) Eef1akmt4 (ENSRNOG00000029529) Mus ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.d ##22 Mus_A ANCESTRAL SPECIES 2 ENSGT00390000007870.d ENSGT00940000167442 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b.k.y.d ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.h ##22 ENSGT00940000162422.i.a ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e.n ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Ryukyu mouse MODERN SPECIES 2 Sap30bp (MGP_CAROLIEiJ_G0017423) Smim6 (MGP_CAROLIEiJ_G0017422) Smim5 (MGP_CAROLIEiJ_G0017421) Recql5 (MGP_CAROLIEiJ_G0017420) Myo15b (MGP_CAROLIEiJ_G0017419) Llgl2 (MGP_CAROLIEiJ_G0017418) Tsen54 (MGP_CAROLIEiJ_G0017417) Caskin2 (MGP_CAROLIEiJ_G0017416) MGP_CAROLIEiJ_G0017415 Grb2 (MGP_CAROLIEiJ_G0017414) Slc25a19 (MGP_CAROLIEiJ_G0017413) Mif4gd (MGP_CAROLIEiJ_G0017412) Mrps7 (MGP_CAROLIEiJ_G0017411) Gga3 (MGP_CAROLIEiJ_G0017410) Nup85 (MGP_CAROLIEiJ_G0017409) MGP_CAROLIEiJ_G0017408 ##22 Jpt1 (MGP_CAROLIEiJ_G0017407) Nt5c (MGP_CAROLIEiJ_G0017406) Armc7 (MGP_CAROLIEiJ_G0017405) Slc16a5 (MGP_CAROLIEiJ_G0017404) Trim80 (MGP_CAROLIEiJ_G0017403) MGP_CAROLIEiJ_G0017402 Atp5h (MGP_CAROLIEiJ_G0017401) Mrpl58 (MGP_CAROLIEiJ_G0017400) Cdr2l (MGP_CAROLIEiJ_G0017399) Hid1 (MGP_CAROLIEiJ_G0017398) Otop3 (MGP_CAROLIEiJ_G0017397) Ush1g (MGP_CAROLIEiJ_G0017396) Otop2 (MGP_CAROLIEiJ_G0017395) Fads6 (MGP_CAROLIEiJ_G0017394) Fdxr (MGP_CAROLIEiJ_G0017393) Mus_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.d ##22 Mus_C ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b.k.y.d ##22 spretus MODERN SPECIES 2 Sap30bp (MGP_SPRETEiJ_G0018268) Smim6 (MGP_SPRETEiJ_G0018267) Smim5 (MGP_SPRETEiJ_G0018266) Recql5 (MGP_SPRETEiJ_G0018265) Myo15b (MGP_SPRETEiJ_G0018264) Llgl2 (MGP_SPRETEiJ_G0018263) Tsen54 (MGP_SPRETEiJ_G0018262) Caskin2 (MGP_SPRETEiJ_G0018261) Tmem94 (MGP_SPRETEiJ_G0018260) Grb2 (MGP_SPRETEiJ_G0018259) Slc25a19 (MGP_SPRETEiJ_G0018258) Mif4gd (MGP_SPRETEiJ_G0018257) Mrps7 (MGP_SPRETEiJ_G0018256) Gga3 (MGP_SPRETEiJ_G0018255) Nup85 (MGP_SPRETEiJ_G0018254) MGP_SPRETEiJ_G0018253 ##22 Jpt1 (MGP_SPRETEiJ_G0018252) Nt5c (MGP_SPRETEiJ_G0018251) Armc7 (MGP_SPRETEiJ_G0018250) Slc16a5 (MGP_SPRETEiJ_G0018249) Trim80 (MGP_SPRETEiJ_G0018248) Kctd2 (MGP_SPRETEiJ_G0018247) Atp5h (MGP_SPRETEiJ_G0018246) Mrpl58 (MGP_SPRETEiJ_G0018245) Cdr2l (MGP_SPRETEiJ_G0018244) Hid1 (MGP_SPRETEiJ_G0018243) Otop3 (MGP_SPRETEiJ_G0018242) Ush1g (MGP_SPRETEiJ_G0018241) Otop2 (MGP_SPRETEiJ_G0018240) Fads6 (MGP_SPRETEiJ_G0018239) Fdxr (MGP_SPRETEiJ_G0018238) Steppe mouse DUPLICATION Steppe mouse MODERN SPECIES 3047 Zfp503 (ENSMSIG00000006660) ENSMSIG00000006674 Comtd1 (ENSMSIG00000006683) Vdac2 (ENSMSIG00000006727) ENSMSIG00000006774 ##22 Samd8 (ENSMSIG00000006788) Dusp13 (ENSMSIG00000006837) Dusp29 (ENSMSIG00000006937) Kat6b (ENSMSIG00000006970) Adk (ENSMSIG00000007123) ENSMSIG00000007196 Vcl (ENSMSIG00000007244) Plau (ENSMSIG00000007288) Camk2g (ENSMSIG00000007318) Ndst2 (ENSMSIG00000007806) Zswim8 (ENSMSIG00000007856) Chchd1 (ENSMSIG00000008020) Fut11 (ENSMSIG00000008049) Sec24c (ENSMSIG00000008066) Synpo2l (ENSMSIG00000008191) Steppe mouse MODERN SPECIES 2339 ENSMSIG00000006638 ENSMSIG00000006632 ##22 Smc2 (ENSMSIG00000006534) Upper Galilee mountains blind mole rat DUPLICATION Upper Galilee mountains blind mole rat DUPLICATION Upper Galilee mountains blind mole rat DUPLICATION Upper Galilee mountains blind mole rat MODERN SPECIES 953 Kras (ENSNGAG00000000727) Etfrf1 (ENSNGAG00000007031) Casc1 (ENSNGAG00000011257) Irag2 (ENSNGAG00000000802) Bcat1 (ENSNGAG00000000419) Sox5 (ENSNGAG00000000919) ENSNGAG00000014146 ##22 Etnk1 (ENSNGAG00000015742) C2cd5 (ENSNGAG00000015602) St8sia1 (ENSNGAG00000018969) Sult6b2 (ENSNGAG00000009596) Cmas (ENSNGAG00000013819) ENSNGAG00000016209 Upper Galilee mountains blind mole rat MODERN SPECIES 1377 Uimc1 (ENSNGAG00000018390) Hk3 (ENSNGAG00000018889) Unc5a (ENSNGAG00000020477) Tspan17 (ENSNGAG00000017466) ENSNGAG00000012821 Sncb (ENSNGAG00000013695) Gprin1 (ENSNGAG00000014070) Cdhr2 (ENSNGAG00000017573) Rnf44 (ENSNGAG00000013720) Faf2 (ENSNGAG00000019765) ENSNGAG00000019059 ##22 Cltb (ENSNGAG00000004247) Higd2a (ENSNGAG00000017723) Nop16 (ENSNGAG00000018045) Arl10 (ENSNGAG00000005101) 4833439L19Rik (ENSNGAG00000014894) ENSNGAG00000016790 ENSNGAG00000010934 Cplx2 (ENSNGAG00000012588) Hrh2 (ENSNGAG00000018742) Sfxn1 (ENSNGAG00000000768) Drd1 (ENSNGAG00000001196) ENSNGAG00000010559 Msx2 (ENSNGAG00000016909) Sptlc1 (ENSNGAG00000017674) Ror2 (ENSNGAG00000011169) Upper Galilee mountains blind mole rat MODERN SPECIES 699 Shisa4 (ENSNGAG00000014499) Ipo9 (ENSNGAG00000014956) Nav1 (ENSNGAG00000024038) Csrp1 (ENSNGAG00000019381) Phlda3 (ENSNGAG00000022425) Tnni1 (ENSNGAG00000023756) Lad1 (ENSNGAG00000024290) Tnnt2 (ENSNGAG00000021109) Pkp1 (ENSNGAG00000001435) Tmem9 (ENSNGAG00000017087) Cacna1s (ENSNGAG00000011324) Kif21b (ENSNGAG00000023527) Mroh3 (ENSNGAG00000024074) ENSNGAG00000014587 Gpr25 (ENSNGAG00000001594) ENSNGAG00000022050 ##22 Camsap2 (ENSNGAG00000024043) Ddx59 (ENSNGAG00000021782) ENSNGAG00000014777 Zfp281 (ENSNGAG00000020911) ENSNGAG00000024180 ENSNGAG00000014002 ENSNGAG00000002284 Ptprc (ENSNGAG00000022894) Atp6v1g3 (ENSNGAG00000019512) Nek7 (ENSNGAG00000023611) Lhx9 (ENSNGAG00000022990) 2310009B15Rik (ENSNGAG00000018229) Dennd1b (ENSNGAG00000023239) Crb1 (ENSNGAG00000022118) Upper Galilee mountains blind mole rat MODERN SPECIES 1253 Copb2 (ENSNGAG00000000348) Mrps22 (ENSNGAG00000007515) ENSNGAG00000012953 ENSNGAG00000015683 ENSNGAG00000018896 ENSNGAG00000021113 ENSNGAG00000021323 ENSNGAG00000017847 Pik3cb (ENSNGAG00000001348) ENSNGAG00000015582 ##22 Laurasiatheria ANCESTRAL SPECIES 4 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 Eulipotyphla ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Common shrew MODERN SPECIES 10821 ENSSARG00000005720 ##22 Laurasiatheria_a ANCESTRAL SPECIES 4 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Artiodactyla ANCESTRAL SPECIES 4 ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT01070000255137 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 Suina ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Pig MODERN SPECIES 16 POLR2B (ENSSSCG00000022955) NOA1 (ENSSSCG00000025792) ENSSSCG00000058108 ENSSSCG00000036736 ENSSSCG00000023357 ENSSSCG00000038107 ENSSSCG00000008898 ENSSSCG00000032353 ENSSSCG00000008899 SRP72 (ENSSSCG00000008900) PAICS (ENSSSCG00000008901) PPAT (ENSSSCG00000008902) AASDH (ENSSSCG00000027403) CRACD (ENSSSCG00000008903) CEP135 (ENSSSCG00000022283) ENSSSCG00000027301 ##22 EXOC1 (ENSSSCG00000023269) EXOC1L (ENSSSCG00000022882) NMU (ENSSSCG00000027954) PDCL2 (ENSSSCG00000008908) CLOCK (ENSSSCG00000008909) TMEM165 (ENSSSCG00000032234) ENSSSCG00000035975 ENSSSCG00000050228 ENSSSCG00000041016 ENSSSCG00000035142 ENSSSCG00000043807 ENSSSCG00000031750 SMIM31 (ENSSSCG00000038890) ENSSSCG00000033699 ENSSSCG00000054836 Artiodactyla_a ANCESTRAL SPECIES 3 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b.i.a #22 ENSGT01070000255137 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Artiodactyla_b ANCESTRAL SPECIES 3 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b.i.a #22 ENSGT01070000255137 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Cetacea ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Odontoceti ANCESTRAL SPECIES 20 ENSGT00940000155187.B ENSGT00390000015984 ENSGT00940000158117 ENSGT00940000159194 ENSGT00390000002661.b ENSGT00390000011922 ENSGT00530000063880.b ENSGT01100000263484.B.b.b ENSGT00390000007776.c ENSGT00390000011748.f.a.a.a ENSGT00940000157594 ENSGT00390000004040.l ENSGT00520000055634.a ENSGT00940000165982 ENSGT00940000159740 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000155549.b ENSGT00950000185438 ENSGT00940000157893 ENSGT00730000111042 ENSGT00940000153117.A ENSGT00940000154655.a ENSGT00390000007815 ENSGT00940000160706 ENSGT00390000010887.a ENSGT00940000155321 ENSGT00910000148652 ENSGT00390000008161.a.b ENSGT00940000155167.b.b ENSGT00940000159374 ENSGT00940000159514 Sperm whale MODERN SPECIES 6 ABRA (ENSPCTG00005018806) ANGPT1 (ENSPCTG00005018675) RSPO2 (ENSPCTG00005018512) EIF3E (ENSPCTG00005018472) EMC2 (ENSPCTG00005018353) TMEM74 (ENSPCTG00005018327) ENSPCTG00005018284 KCNV1 (ENSPCTG00005018241) ENSPCTG00005018190 SYBU (ENSPCTG00005017886) EBAG9 (ENSPCTG00005017808) PKHD1L1 (ENSPCTG00005017025) ENY2 (ENSPCTG00005016880) ENSPCTG00005016799 TRHR (ENSPCTG00005016758) ENSPCTG00005016715 ##22 CSMD3 (ENSPCTG00005014261) ENSPCTG00005014104 TRPS1 (ENSPCTG00005013931) EIF3H (ENSPCTG00005013684) UTP23 (ENSPCTG00005013642) RAD21 (ENSPCTG00005013451) AARD (ENSPCTG00005013378) SLC30A8 (ENSPCTG00005013149) MED30 (ENSPCTG00005013078) ENSPCTG00005013026 ENSPCTG00005012974 EXT1 (ENSPCTG00005012850) ENSPCTG00005012813 SAMD12 (ENSPCTG00005012788) TNFRSF11B (ENSPCTG00005012744) Odontoceti_a ANCESTRAL SPECIES 17 ENSGT00940000155187.B ENSGT00390000015984 ENSGT00940000158117 ENSGT00940000159194 ENSGT00390000002661.b ENSGT00390000011922 ENSGT00530000063880.b ENSGT01100000263484.B.b.b ENSGT00390000007776.c ENSGT00390000011748.f.a.a.a ENSGT00940000157594 ENSGT00390000004040.l ENSGT00520000055634.a ENSGT00940000165982 ENSGT00940000159740 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000155549.b ENSGT00950000185438 ENSGT00940000157893 ENSGT00730000111042 ENSGT00940000153117.A ENSGT00940000154655.a ENSGT00390000007815 ENSGT00940000160706 ENSGT00390000010887.a ENSGT00940000155321 ENSGT00910000148652 ENSGT00390000008161.a.b ENSGT00940000155167.b.b ENSGT00940000159374 ENSGT00940000159514.e Odontoceti_b ANCESTRAL SPECIES 19 ENSGT00390000015984 ENSGT00940000158117 ENSGT00390000012084.x ENSGT00940000159194 ENSGT00390000002661.b ENSGT00390000011922 ENSGT00530000063880.b ENSGT01100000263484.B.b.b ENSGT00390000007776.c ENSGT00390000011748.f.a.a.a ENSGT00940000157594 ENSGT00390000004040.l ENSGT00520000055634.a ENSGT00940000165982 ENSGT00940000159740 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000155549.b ENSGT00950000185438 ENSGT00940000157893 ENSGT00730000111042 ENSGT00940000153117.A ENSGT00940000154655.a ENSGT00390000007815 ENSGT00940000160706 ENSGT00390000010887.a ENSGT00940000155321 ENSGT00910000148652 ENSGT00390000008161.a.b ENSGT00940000155167.b.b ENSGT00940000159374 ENSGT00940000159514.e Monodontidae ANCESTRAL SPECIES 20 ENSGT00940000155187.B ENSGT00390000015984 ENSGT00940000158117 ENSGT00390000012084.x ENSGT00940000159194 ENSGT00390000002661.b ENSGT00390000011922 ENSGT00530000063880.b ENSGT01100000263484.B.b.b ENSGT00390000007776.c ENSGT00390000011748.f.a.a.a ENSGT00940000157594 ENSGT00390000004040.l ENSGT00520000055634.a ENSGT00940000159740 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000155549.b ENSGT00950000185438 ENSGT00940000157893 ENSGT00730000111042 ENSGT00940000153117.A ENSGT00940000154655.a ENSGT00390000007815 ENSGT00940000160706 ENSGT00390000010887.a ENSGT00940000155321 ENSGT00910000148652 ENSGT00390000008161.a.b ENSGT00940000155167.b.b ENSGT00940000159374 ENSGT00940000159514.e Narwhal MODERN SPECIES 300 OXR1 (ENSMMNG00015011674) ABRA (ENSMMNG00015011560) ANGPT1 (ENSMMNG00015011529) ENSMMNG00015011513 RSPO2 (ENSMMNG00015011490) EIF3E (ENSMMNG00015011463) EMC2 (ENSMMNG00015011417) TMEM74 (ENSMMNG00015011354) TRHR (ENSMMNG00015011345) NUDCD1 (ENSMMNG00015011320) ENSMMNG00015011298 PKHD1L1 (ENSMMNG00015011184) ENSMMNG00015011122 SYBU (ENSMMNG00015011046) KCNV1 (ENSMMNG00015011005) ENSMMNG00015010996 ##22 CSMD3 (ENSMMNG00015010683) ENSMMNG00015010545 TRPS1 (ENSMMNG00015010519) EIF3H (ENSMMNG00015010471) UTP23 (ENSMMNG00015010441) RAD21 (ENSMMNG00015010412) AARD (ENSMMNG00015010400) SLC30A8 (ENSMMNG00015010374) MED30 (ENSMMNG00015010355) ENSMMNG00015010341 EXT1 (ENSMMNG00015010321) ENSMMNG00015010297 SAMD12 (ENSMMNG00015010283) TNFRSF11B (ENSMMNG00015010272) COLEC10 (ENSMMNG00015010262) Beluga whale DUPLICATION Beluga whale MODERN SPECIES 44 MAP4K5 (ENSDLEG00000009907) CDKL1 (ENSDLEG00000009991) ATP5S (ENSDLEG00000010048) L2HGDH (ENSDLEG00000010068) SOS2 (ENSDLEG00000010181) VCPKMT (ENSDLEG00000010678) ENSDLEG00000010695 NEMF (ENSDLEG00000010733) KLHDC2 (ENSDLEG00000010929) KLHDC1 (ENSDLEG00000010967) ENSDLEG00000010993 DNAAF2 (ENSDLEG00000011002) MGAT2 (ENSDLEG00000011008) RPL36AL (ENSDLEG00000011016) LRR1 (ENSDLEG00000011024) SUMO4 (ENSDLEG00000011037) ##22 ENSDLEG00000011056 RCHY1 (ENSDLEG00000011086) MDGA2 (ENSDLEG00000011093) ENSDLEG00000011136 RPL10L (ENSDLEG00000011152) ENSDLEG00000011165 MIS18BP1 (ENSDLEG00000011193) FANCM (ENSDLEG00000011267) FKBP3 (ENSDLEG00000011337) PRPF39 (ENSDLEG00000011359) TOGARAM1 (ENSDLEG00000011465) KLHL28 (ENSDLEG00000011522) CUNH14orf28 (ENSDLEG00000011535) ENSDLEG00000011547 ENSDLEG00000011553 Beluga whale MODERN SPECIES 55 CSMD3 (ENSDLEG00000009010) ENSDLEG00000009504 ##22 TRPS1 (ENSDLEG00000009523) EIF3H (ENSDLEG00000009556) UTP23 (ENSDLEG00000009608) RAD21 (ENSDLEG00000009626) AARD (ENSDLEG00000009719) SLC30A8 (ENSDLEG00000009731) MED30 (ENSDLEG00000009745) EXT1 (ENSDLEG00000009759) ENSDLEG00000009819 SAMD12 (ENSDLEG00000009828) ENSDLEG00000009857 COLEC10 (ENSDLEG00000009888) TNFRSF11B (ENSDLEG00000009932) MAL2 (ENSDLEG00000009959) NOV (ENSDLEG00000009992) Vaquita DUPLICATION Vaquita MODERN SPECIES 12 DYNLL2 (ENSPSNG00000014740) OR4D2 (ENSPSNG00000014791) EPX (ENSPSNG00000014828) MKS1 (ENSPSNG00000015027) LPO (ENSPSNG00000015320) MPO (ENSPSNG00000015693) TSPOAP1 (ENSPSNG00000015927) SUPT4H1 (ENSPSNG00000016618) RNF43 (ENSPSNG00000016739) HSF5 (ENSPSNG00000016971) MTMR4 (ENSPSNG00000017089) SEPTIN4 (ENSPSNG00000017836) TEX14 (ENSPSNG00000018249) RAD51C (ENSPSNG00000019147) PPM1E (ENSPSNG00000019275) ENSPSNG00000019408 ##22 ENSPSNG00000019458 TRIM37 (ENSPSNG00000019523) ENSPSNG00000013102 PRR11 (ENSPSNG00000013196) SMG8 (ENSPSNG00000013328) GDPD1 (ENSPSNG00000013487) YPEL2 (ENSPSNG00000014008) DHX40 (ENSPSNG00000014096) CLTC (ENSPSNG00000014273) PTRH2 (ENSPSNG00000014462) VMP1 (ENSPSNG00000014510) TUBD1 (ENSPSNG00000014682) RPS6KB1 (ENSPSNG00000014972) RNFT1 (ENSPSNG00000015132) MED13 (ENSPSNG00000015192) Vaquita MODERN SPECIES 8 ANGPT1 (ENSPSNG00000021892) ENSPSNG00000004814 RSPO2 (ENSPSNG00000004950) EIF3E (ENSPSNG00000005084) EMC2 (ENSPSNG00000005113) TMEM74 (ENSPSNG00000005140) TRHR (ENSPSNG00000005157) NUDCD1 (ENSPSNG00000005185) ENSPSNG00000005225 PKHD1L1 (ENSPSNG00000005324) ENSPSNG00000005584 SYBU (ENSPSNG00000005652) ENSPSNG00000005769 KCNV1 (ENSPSNG00000005798) CSMD3 (ENSPSNG00000006105) ENSPSNG00000007003 ##22 TRPS1 (ENSPSNG00000007084) EIF3H (ENSPSNG00000007183) UTP23 (ENSPSNG00000007276) RAD21 (ENSPSNG00000007330) AARD (ENSPSNG00000007427) SLC30A8 (ENSPSNG00000007461) MED30 (ENSPSNG00000007574) EXT1 (ENSPSNG00000007631) SAMD12 (ENSPSNG00000007740) TNFRSF11B (ENSPSNG00000007923) COLEC10 (ENSPSNG00000007960) MAL2 (ENSPSNG00000008002) CCN3 (ENSPSNG00000008043) ENPP2 (ENSPSNG00000008163) TAF2 (ENSPSNG00000008838) Blue whale DUPLICATION Blue whale MODERN SPECIES 6 RSL1D1 (ENSBMSG00010022020) GSPT1 (ENSBMSG00010022028) TNFRSF17 (ENSBMSG00010022032) ENSBMSG00010022035 ENSBMSG00010022039 SNX29 (ENSBMSG00010022044) CPPED1 (ENSBMSG00010022051) SHISA9 (ENSBMSG00010022053) ENSBMSG00010022060 ERCC4 (ENSBMSG00010022062) MRTFB (ENSBMSG00010022066) ENSBMSG00010022074 PARN (ENSBMSG00010022087) BFAR (ENSBMSG00010022095) PLA2G10 (ENSBMSG00010013013) SUMO4 (ENSBMSG00010013022) ##22 RRN3 (ENSBMSG00010013042) NTAN1 (ENSBMSG00010013068) PDXDC1 (ENSBMSG00010013120) MPV17L (ENSBMSG00010013157) BMERB1 (ENSBMSG00010013191) ENSBMSG00010013235 MARF1 (ENSBMSG00010013280) ENSBMSG00010013331 NDE1 (ENSBMSG00010013367) MYH11 (ENSBMSG00010013542) CEP20 (ENSBMSG00010013807) ABCC1 (ENSBMSG00010013856) ABCC6 (ENSBMSG00010013979) ENSBMSG00010014232 XYLT1 (ENSBMSG00010014393) Blue whale MODERN SPECIES 8 ENSBMSG00010013717 ENSBMSG00010013702 ENSBMSG00010013695 RSPO2 (ENSBMSG00010013675) EIF3E (ENSBMSG00010013655) ENSBMSG00010013650 EMC2 (ENSBMSG00010013639) TMEM74 (ENSBMSG00010013628) TRHR (ENSBMSG00010013619) ENSBMSG00010013606 ENSBMSG00010013592 PKHD1L1 (ENSBMSG00010013505) ENSBMSG00010013440 SYBU (ENSBMSG00010013336) KCNV1 (ENSBMSG00010013282) ENSBMSG00010013266 ##22 ENSBMSG00010013249 CSMD3 (ENSBMSG00010013044) ENSBMSG00010012938 TRPS1 (ENSBMSG00010012894) EIF3H (ENSBMSG00010012850) UTP23 (ENSBMSG00010012823) RAD21 (ENSBMSG00010012772) AARD (ENSBMSG00010012752) SLC30A8 (ENSBMSG00010012732) MED30 (ENSBMSG00010012718) ENSBMSG00010012705 EXT1 (ENSBMSG00010012696) ENSBMSG00010012685 ENSBMSG00010012678 SAMD12 (ENSBMSG00010012660) Pecora ANCESTRAL SPECIES 1 ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.p ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Yarkand deer DUPLICATION Yarkand deer MODERN SPECIES 1070 ENSCHYG00000009765 ##22 Yarkand deer MODERN SPECIES 8 SLC39A8 (ENSCHYG00000007051) NFKB1 (ENSCHYG00000006749) MANBA (ENSCHYG00000026722) ENSCHYG00000026677 CISD2 (ENSCHYG00000026649) SLC9B1 (ENSCHYG00000026616) SLC9B2 (ENSCHYG00000026582) BDH2 (ENSCHYG00000026562) CENPE (ENSCHYG00000026499) ENSCHYG00000026451 ENSCHYG00000026448 TACR3 (ENSCHYG00000026435) ENSCHYG00000026424 CXXC4 (ENSCHYG00000026410) TET2 (ENSCHYG00000026386) ENSCHYG00000026368 ##22 PPA2 (ENSCHYG00000026198) ENSCHYG00000026162 ENSCHYG00000026139 INTS12 (ENSCHYG00000026129) ENSCHYG00000026120 ENSCHYG00000026020 ENSCHYG00000025992 ENSCHYG00000025950 ENSCHYG00000025921 ENSCHYG00000025908 ENSCHYG00000025878 ENSCHYG00000025869 ENSCHYG00000025860 ENSCHYG00000025833 ENSCHYG00000025703 Percora_a ANCESTRAL SPECIES 2 ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.p ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Siberian musk deer MODERN SPECIES 1210 SAP30BP (ENSMMSG00000024161) RECQL5 (ENSMMSG00000024167) SMIM6 (ENSMMSG00000024174) SMIM5 (ENSMMSG00000012703) ENSMMSG00000012749 LLGL2 (ENSMMSG00000013031) TSEN54 (ENSMMSG00000013144) CASKIN2 (ENSMMSG00000013186) TMEM94 (ENSMMSG00000013252) GRB2 (ENSMMSG00000013432) SLC25A19 (ENSMMSG00000013488) ENSMMSG00000013512 MRPS7 (ENSMMSG00000013525) GGA3 (ENSMMSG00000013547) NUP85 (ENSMMSG00000013605) SUMO4 (ENSMMSG00000013687) ##22 JPT1 (ENSMMSG00000013709) NT5C (ENSMMSG00000013730) ARMC7 (ENSMMSG00000013739) SLC16A5 (ENSMMSG00000013758) ENSMMSG00000013779 ENSMMSG00000013811 ENSMMSG00000013840 MRPL58 (ENSMMSG00000013874) CDR2L (ENSMMSG00000013888) HID1 (ENSMMSG00000013913) OTOP3 (ENSMMSG00000013930) OTOP2 (ENSMMSG00000013987) USH1G (ENSMMSG00000014031) FADS6 (ENSMMSG00000014042) FDXR (ENSMMSG00000014081) Bovidae ANCESTRAL SPECIES 2 ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.p ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Bovinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 American bison MODERN SPECIES 3356 RNF141 (ENSBBBG00000002328) AMPD3 (ENSBBBG00000008321) ADM (ENSBBBG00000012338) SBF2 (ENSBBBG00000012358) SWAP70 (ENSBBBG00000012379) WEE1 (ENSBBBG00000002362) ENSBBBG00000002366 ZNF143 (ENSBBBG00000002398) IPO7 (ENSBBBG00000012558) TMEM41B (ENSBBBG00000012588) ENSBBBG00000012634 DENND5A (ENSBBBG00000012689) SCUBE2 (ENSBBBG00000002468) NRIP3 (ENSBBBG00000012793) TMEM9B (ENSBBBG00000012801) ENSBBBG00000006938 ##22 ASCL3 (ENSBBBG00000012810) C11orf16 (ENSBBBG00000001788) AKIP1 (ENSBBBG00000012833) DENND2B (ENSBBBG00000002580) ENSBBBG00000013022 TRIM66 (ENSBBBG00000013158) STK33 (ENSBBBG00000013196) LMO1 (ENSBBBG00000013211) RIC3 (ENSBBBG00000008112) TUB (ENSBBBG00000002683) ENSBBBG00000013323 ENSBBBG00000013328 ENSBBBG00000013352 ENSBBBG00000013355 ENSBBBG00000013357 Bos ANCESTRAL SPECIES 1 ENSGT01100000263555.b ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.b.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00390000003582.p ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00390000004856.w.a.a.b.a Bos_b ANCESTRAL SPECIES 21 ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000164037 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 Hybrid Bos Indicus MODERN SPECIES 315 ENSBIXG00005027138 ENSBIXG00005027125 ENSBIXG00005005606 ENSBIXG00005027055 SLITRK4 (ENSBIXG00005004638) ENSBIXG00005026979 ENSBIXG00005004614 LDOC1 (ENSBIXG00005004606) SOX3 (ENSBIXG00005026889) ENSBIXG00005026868 ENSBIXG00005026853 ENSBIXG00005026834 ENSBIXG00005026821 ENSBIXG00005026810 ENSBIXG00005026784 SUMO4 (ENSBIXG00005026775) ##22 ENSBIXG00005026769 ATP11C (ENSBIXG00005026660) F9 (ENSBIXG00005004413) ENSBIXG00005025791 ENSBIXG00005006530 ENSBIXG00005025744 ZIC3 (ENSBIXG00005025705) GPR101 (ENSBIXG00005004378) ENSBIXG00005004367 RBMXL1 (ENSBIXG00005025602) ARHGEF6 (ENSBIXG00005025485) CD40LG (ENSBIXG00005025295) VGLL1 (ENSBIXG00005004296) ENSBIXG00005025237 BRS3 (ENSBIXG00005025192) Cow DUPLICATION Cow MODERN SPECIES 10 SAP30BP (ENSBTAG00000011717) RECQL5 (ENSBTAG00000011715) SMIM6 (ENSBTAG00000047510) SMIM5 (ENSBTAG00000010758) ENSBTAG00000011713 LLGL2 (ENSBTAG00000020067) TSEN54 (ENSBTAG00000000824) CASKIN2 (ENSBTAG00000007220) TMEM94 (ENSBTAG00000007217) GRB2 (ENSBTAG00000004736) SLC25A19 (ENSBTAG00000000202) MIF4GD (ENSBTAG00000030168) MRPS7 (ENSBTAG00000016133) GGA3 (ENSBTAG00000016128) NUP85 (ENSBTAG00000016126) SUMO2 (ENSBTAG00000030169) ##22 JPT1 (ENSBTAG00000030170) NT5C (ENSBTAG00000011527) ARMC7 (ENSBTAG00000014799) SLC16A5 (ENSBTAG00000001110) ENSBTAG00000026645 KCTD2 (ENSBTAG00000021231) ATP5PD (ENSBTAG00000021227) MRPL58 (ENSBTAG00000003303) CDR2L (ENSBTAG00000039466) HID1 (ENSBTAG00000010809) OTOP3 (ENSBTAG00000040111) OTOP2 (ENSBTAG00000021257) USH1G (ENSBTAG00000017252) ENSBTAG00000017248 FADS6 (ENSBTAG00000017242) Cow DUPLICATION Cow MODERN SPECIES 174 ENSBTAG00000051652 ENSBTAG00000054414 ENSBTAG00000052553 SOX3 (ENSBTAG00000049481) ENSBTAG00000014397 CXHXorf66 (ENSBTAG00000049080) ENSBTAG00000049553 ENSBTAG00000048333 ENSBTAG00000051112 ENSBTAG00000050922 ##22 ENSBTAG00000054134 ENSBTAG00000049774 F9 (ENSBTAG00000004003) ENSBTAG00000052373 FGF13 (ENSBTAG00000020194) MAGEA11 (ENSBTAG00000018323) ZIC3 (ENSBTAG00000021413) TM9SF5 (ENSBTAG00000054951) RBMX (ENSBTAG00000013308) ENSBTAG00000054684 CD40LG (ENSBTAG00000051078) VGLL1 (ENSBTAG00000001880) HTATSF1 (ENSBTAG00000055212) ENSBTAG00000054559 ENSBTAG00000051318 Cow MODERN SPECIES 177 ENSBTAG00000018311 AFF2 (ENSBTAG00000020750) FMR1NB (ENSBTAG00000034045) FMR1 (ENSBTAG00000012552) ENSBTAG00000045773 ENSBTAG00000016940 SLITRK2 (ENSBTAG00000039377) MGC148328 (ENSBTAG00000045940) ENSBTAG00000019009 ENSBTAG00000000997 SLITRK4 (ENSBTAG00000011780) ENSBTAG00000049311 ENSBTAG00000052701 ENSBTAG00000036144 ENSBTAG00000047819 ENSBTAG00000047089 ##22 ENSBTAG00000051471 ATP11C (ENSBTAG00000016484) MCF2 (ENSBTAG00000004007) ENSBTAG00000019221 ENSBTAG00000051480 GPR101 (ENSBTAG00000039388) ARHGEF6 (ENSBTAG00000017850) CD40LG (ENSBTAG00000017843) ENSBTAG00000054942 BRS3 (ENSBTAG00000005616) MAP7D3 (ENSBTAG00000014170) ENSBTAG00000054899 ENSBTAG00000052733 ENSBTAG00000045569 ENSBTAG00000049183 Caprinae ANCESTRAL SPECIES 1 ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.p ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Rambouillet Sheep MODERN SPECIES 19 INHBC (ENSOARG00020001401) INHBE (ENSOARG00020001392) GLI1 (ENSOARG00020001339) ARHGAP9 (ENSOARG00020001310) MARS1 (ENSOARG00020001285) DDIT3 (ENSOARG00020001256) MBD6 (ENSOARG00020001220) DCTN2 (ENSOARG00020001160) ENSOARG00020001125 KIF5A (ENSOARG00020001004) PIP4K2C (ENSOARG00020000907) DTX3 (ENSOARG00020000880) ARHGEF25 (ENSOARG00020000777) ENSOARG00020000696 B4GALNT1 (ENSOARG00020000620) ENSOARG00020000589 ##22 OS9 (ENSOARG00020000439) AGAP2 (ENSOARG00020000269) TSPAN31 (ENSOARG00020000196) CDK4 (ENSOARG00020000149) MARCHF9 (ENSOARG00020000135) CYP27B1 (ENSOARG00020000126) METTL1 (ENSOARG00020000098) EEF1AKMT3 (ENSOARG00020019841) TSFM (ENSOARG00020019779) AVIL (ENSOARG00020019683) CTDSP2 (ENSOARG00020019613) ATP23 (ENSOARG00020019439) LRIG3 (ENSOARG00020019130) ENSOARG00020019093 SLC16A7 (ENSOARG00020018995) Goat DUPLICATION Goat MODERN SPECIES 10 SAP30BP (ENSCHIG00000021087) RECQL5 (ENSCHIG00000009742) SMIM5 (ENSCHIG00000025984) ENSCHIG00000026451 ENSCHIG00000019066 LLGL2 (ENSCHIG00000013481) TSEN54 (ENSCHIG00000019908) CASKIN2 (ENSCHIG00000021700) TMEM94 (ENSCHIG00000013867) GRB2 (ENSCHIG00000016061) SLC25A19 (ENSCHIG00000004195) MIF4GD (ENSCHIG00000006682) MRPS7 (ENSCHIG00000026974) GGA3 (ENSCHIG00000002911) NUP85 (ENSCHIG00000017756) ENSCHIG00000026491 ##22 JPT1 (ENSCHIG00000021173) NT5C (ENSCHIG00000024811) ARMC7 (ENSCHIG00000025430) SLC16A5 (ENSCHIG00000018298) ENSCHIG00000023179 ENSCHIG00000011777 ENSCHIG00000026001 MRPL58 (ENSCHIG00000018213) CDR2L (ENSCHIG00000025728) HID1 (ENSCHIG00000012292) OTOP3 (ENSCHIG00000021265) OTOP2 (ENSCHIG00000013313) USH1G (ENSCHIG00000010692) FADS6 (ENSCHIG00000018568) FDXR (ENSCHIG00000016362) Goat MODERN SPECIES 6 ENSCHIG00000024106 ENSCHIG00000019517 ENSCHIG00000009634 ENSCHIG00000009687 ENSCHIG00000009321 ENSCHIG00000023570 ENSCHIG00000011985 ENSCHIG00000004750 ENSCHIG00000003235 ENSCHIG00000013497 ENSCHIG00000007971 ENSCHIG00000015116 ENSCHIG00000000581 ENSCHIG00000015759 ENSCHIG00000021618 ENSCHIG00000017985 ##22 TRIM34 (ENSCHIG00000020830) OR52B4 (ENSCHIG00000010040) TRIM6 (ENSCHIG00000015317) ENSCHIG00000010458 ENSCHIG00000001385 ENSCHIG00000020519 ENSCHIG00000008792 ENSCHIG00000013271 ENSCHIG00000017169 UBQLN3 (ENSCHIG00000025920) ENSCHIG00000016112 ENSCHIG00000010439 ENSCHIG00000004915 ENSCHIG00000010185 ENSCHIG00000010294 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Carnivora ANCESTRAL SPECIES 9 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.d ##22 ENSGT00940000164037 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.r ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Caniformia ANCESTRAL SPECIES 6 ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.r ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Caniformia_b ANCESTRAL SPECIES 20 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b.i.a #22 ENSGT00940000164037 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.r ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Ursidae ANCESTRAL SPECIES 19 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.b.i.a #22 ENSGT00940000164037 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.r ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Ursus ANCESTRAL SPECIES 2 ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00390000008294.e.b.a.b ENSGT00940000158336 ENSGT00390000003582.r ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b American black bear MODERN SPECIES 464 SLC25A19 (ENSUAMG00000010523) MIF4GD (ENSUAMG00000010522) MRPS7 (ENSUAMG00000010519) GGA3 (ENSUAMG00000010516) NUP85 (ENSUAMG00000010511) ENSUAMG00000010509 ##22 JPT1 (ENSUAMG00000010508) NT5C (ENSUAMG00000010506) ARMC7 (ENSUAMG00000010504) SLC16A5 (ENSUAMG00000010501) ENSUAMG00000010494 ENSUAMG00000010492 KCTD2 (ENSUAMG00000010485) ENSUAMG00000010479 MRPL58 (ENSUAMG00000010472) CDR2L (ENSUAMG00000010466) HID1 (ENSUAMG00000010460) OTOP3 (ENSUAMG00000010454) OTOP2 (ENSUAMG00000010449) USH1G (ENSUAMG00000010445) FADS6 (ENSUAMG00000010440) Mustelinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 American mink DUPLICATION American mink MODERN SPECIES 15 CSN7B (ENSNVIG00000003245) PDE6D (ENSNVIG00000003209) ENSNVIG00000003158 ENSNVIG00000003140 NMUR1 (ENSNVIG00000003127) NCL (ENSNVIG00000003097) B3GNT7 (ENSNVIG00000003085) ARMC9 (ENSNVIG00000002959) 5HT2B (ENSNVIG00000002938) PSMD1 (ENSNVIG00000002690) ENSNVIG00000002636 GPR55 (ENSNVIG00000002627) ITM2C (ENSNVIG00000002550) CAB39 (ENSNVIG00000002502) LY10L (ENSNVIG00000002492) SUMO4 (ENSNVIG00000002469) ##22 ENSNVIG00000002445 SP140 (ENSNVIG00000002397) ENSNVIG00000002378 ENSNVIG00000002361 ENSNVIG00000002349 SLC16A14 (ENSNVIG00000002343) FBXO36 (ENSNVIG00000002314) TRIP12 (ENSNVIG00000001860) ENSNVIG00000001826 DNER (ENSNVIG00000001800) PID1 (ENSNVIG00000001767) ENSNVIG00000001741 SPHKAP (ENSNVIG00000001650) WDR69 (ENSNVIG00000001577) CCL20 (ENSNVIG00000001564) American mink MODERN SPECIES 21 HSPA4 (ENSNVIG00000017054) ZCCHC10 (ENSNVIG00000017298) AFF4 (ENSNVIG00000017333) ENSNVIG00000017358 LEAP2 (ENSNVIG00000017370) ENSNVIG00000017379 GDF9 (ENSNVIG00000017386) SHROOM1 (ENSNVIG00000017407) SOWAHA (ENSNVIG00000017442) SEPTIN8 (ENSNVIG00000017457) KIF3A (ENSNVIG00000017484) ENSNVIG00000017632 ENSNVIG00000017641 IL13 (ENSNVIG00000017686) RAD50 (ENSNVIG00000017706) ENSNVIG00000017878 ##22 IL5 (ENSNVIG00000017886) IRF1 (ENSNVIG00000017899) SLC22A5 (ENSNVIG00000017983) SLC22A4 (ENSNVIG00000018011) PDLI4 (ENSNVIG00000018031) P4HA2 (ENSNVIG00000018082) CSF2 (ENSNVIG00000018231) ACSL6 (ENSNVIG00000018275) MEIKIN (ENSNVIG00000018458) FNIP1 (ENSNVIG00000018484) RAPGEF6 (ENSNVIG00000018626) C42S2 (ENSNVIG00000019069) LYRM7 (ENSNVIG00000019099) HINT1 (ENSNVIG00000019105) CHSY3 (ENSNVIG00000019120) Canidae ANCESTRAL SPECIES 28 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00390000008902.i.a.a.b ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.q.a.b.a.a.b.a ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Canis_lupus ANCESTRAL SPECIES 35 ENSGT00730000111351 ENSGT00390000017146.b ENSGT01030000235093 ENSGT00950000182950.B ENSGT00940000164099.a.a ENSGT00940000157953 ENSGT00940000161271 ENSGT00940000160889 ENSGT00940000159927 ENSGT01030000234579.B.b ENSGT00940000154652 ENSGT00390000001394 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000157453 ENSGT00940000154927 ENSGT00950000182899.B.a ENSGT00940000156905.p ENSGT00390000001101 ENSGT00940000157694 ENSGT00940000154474.A ENSGT00940000157874 ENSGT00940000157849 ENSGT00940000157872 ENSGT00390000018090 ENSGT00640000092035 ENSGT00940000162479 ENSGT00510000049560 ENSGT00940000155360.B Dingo MODERN SPECIES 337 CHAMP1 (ENSCAFG00020014265) UPF3A (ENSCAFG00020014268) CDC16 (ENSCAFG00020014295) ENSCAFG00020014305 RASA3 (ENSCAFG00020014345) GAS6 (ENSCAFG00020015941) ENSCAFG00020015947 GRK1 (ENSCAFG00020015959) ATP4B (ENSCAFG00020015967) TFDP1 (ENSCAFG00020015970) TMCO3 (ENSCAFG00020015979) ENSCAFG00020015988 ##22 DCUN1D2 (ENSCAFG00020015991) ENSCAFG00020016026 GRTP1 (ENSCAFG00020016030) LAMP1 (ENSCAFG00020016036) CUL4A (ENSCAFG00020016099) PCID2 (ENSCAFG00020019522) F10 (ENSCAFG00020019535) F7 (ENSCAFG00020019593) MCF2L (ENSCAFG00020019596) ATP11A (ENSCAFG00020019648) TUBGCP3 (ENSCAFG00020020036) ENSCAFG00020020143 SOX1 (ENSCAFG00020020144) TEX29 (ENSCAFG00020020147) ARHGEF7 (ENSCAFG00020020152) Red fox DUPLICATION Red fox DUPLICATION Red fox MODERN SPECIES 73 CHAMP1 (ENSVVUG00000013534) UPF3A (ENSVVUG00000013538) ENSVVUG00000013551 CDC16 (ENSVVUG00000013555) ENSVVUG00000013568 RASA3 (ENSVVUG00000013569) ENSVVUG00000013577 GAS6 (ENSVVUG00000013580) ENSVVUG00000013582 CEBPG (ENSVVUG00000013584) GRK1 (ENSVVUG00000013586) ATP4B (ENSVVUG00000013595) TFDP1 (ENSVVUG00000013603) TMCO3 (ENSVVUG00000013609) ENSVVUG00000013630 ##22 DCUN1D2 (ENSVVUG00000013633) ENSVVUG00000013658 GRTP1 (ENSVVUG00000013662) LAMP1 (ENSVVUG00000013673) CUL4A (ENSVVUG00000013815) PCID2 (ENSVVUG00000019740) F10 (ENSVVUG00000019750) F7 (ENSVVUG00000019755) MCF2L (ENSVVUG00000019769) ATP11A (ENSVVUG00000019821) TUBGCP3 (ENSVVUG00000019837) ENSVVUG00000019845 ENSVVUG00000019850 ENSVVUG00000019866 ENSVVUG00000019887 Red fox MODERN SPECIES 149 WWC2 (ENSVVUG00000013243) ENSVVUG00000013237 CDKN2AIP (ENSVVUG00000013201) ING2 (ENSVVUG00000013195) RWDD4 (ENSVVUG00000013184) TRAPPC11 (ENSVVUG00000013132) STOX2 (ENSVVUG00000013098) ENSVVUG00000013067 ENPP6 (ENSVVUG00000013058) IRF2 (ENSVVUG00000013048) ENSVVUG00000013039 CASP3 (ENSVVUG00000013027) PRIMPOL (ENSVVUG00000013012) CENPU (ENSVVUG00000013000) ACSL1 (ENSVVUG00000012948) ENSVVUG00000012943 ##22 HELT (ENSVVUG00000012937) SLC25A4 (ENSVVUG00000012924) CFAP97 (ENSVVUG00000012919) SNX25 (ENSVVUG00000012863) LRP2BP (ENSVVUG00000012854) ENSVVUG00000012851 UFSP2 (ENSVVUG00000012849) CUNH4orf47 (ENSVVUG00000012844) ENSVVUG00000012827 PDLIM3 (ENSVVUG00000012815) SORBS2 (ENSVVUG00000012709) TLR3 (ENSVVUG00000012689) FAM149A (ENSVVUG00000012658) CYP4V2 (ENSVVUG00000012645) KLKB1 (ENSVVUG00000012628) Red fox MODERN SPECIES 31 SMIM5 (ENSVVUG00000011531) RECQL5 (ENSVVUG00000011515) ENSVVUG00000011506 ENSVVUG00000011461 LLGL2 (ENSVVUG00000011427) TSEN54 (ENSVVUG00000011411) CASKIN2 (ENSVVUG00000011393) TMEM94 (ENSVVUG00000011343) GRB2 (ENSVVUG00000011327) SLC25A19 (ENSVVUG00000011319) MIF4GD (ENSVVUG00000011277) MRPS7 (ENSVVUG00000011263) ENSVVUG00000011258 GGA3 (ENSVVUG00000011246) NUP85 (ENSVVUG00000011209) ENSVVUG00000011196 ##22 JPT1 (ENSVVUG00000011193) ENSVVUG00000011190 ARMC7 (ENSVVUG00000011185) SLC16A5 (ENSVVUG00000011176) ENSVVUG00000011168 KCTD2 (ENSVVUG00000011143) ENSVVUG00000011131 MRPL58 (ENSVVUG00000011117) CDR2L (ENSVVUG00000011113) HID1 (ENSVVUG00000010365) OTOP3 (ENSVVUG00000010290) OTOP2 (ENSVVUG00000010261) USH1G (ENSVVUG00000010254) FADS6 (ENSVVUG00000010242) FDXR (ENSVVUG00000010222) Laurasiatheria_c ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Equus ANCESTRAL SPECIES ENSGT00390000007870 ENSGT00520000062027 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Donkey MODERN SPECIES 4 SAP30BP (ENSEASG00005000720) ENSEASG00005028558 RECQL5 (ENSEASG00005000704) ENSEASG00005034246 ENSEASG00005000595 LLGL2 (ENSEASG00005000586) TSEN54 (ENSEASG00005000579) CASKIN2 (ENSEASG00005000573) TMEM94 (ENSEASG00005000559) GRB2 (ENSEASG00005000553) SLC25A19 (ENSEASG00005000534) MIF4GD (ENSEASG00005000487) MRPS7 (ENSEASG00005000432) GGA3 (ENSEASG00005000420) NUP85 (ENSEASG00005000412) ENSEASG00005000369 ##22 JPT1 (ENSEASG00005032104) ENSEASG00005024224 ARMC7 (ENSEASG00005000330) SLC16A5 (ENSEASG00005000328) ENSEASG00005000316 KCTD2 (ENSEASG00005024620) ATP5PD (ENSEASG00005000278) MRPL58 (ENSEASG00005000272) CDR2L (ENSEASG00005029126) HID1 (ENSEASG00005000266) OTOP3 (ENSEASG00005000074) OTOP2 (ENSEASG00005000016) USH1G (ENSEASG00005019186) FADS6 (ENSEASG00005019181) FDXR (ENSEASG00005019174) Chiroptera ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Microchiroptera ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Microbat MODERN SPECIES 1052 PIF1 (ENSMLUG00000025361) PLEKHO2 (ENSMLUG00000016390) ENSMLUG00000029215 ANKDD1A (ENSMLUG00000016394) SPG21 (ENSMLUG00000016404) MTFMT (ENSMLUG00000016414) SLC51B (ENSMLUG00000016432) RASL12 (ENSMLUG00000016438) KBTBD13 (ENSMLUG00000029350) PDCD7 (ENSMLUG00000030414) CLPX (ENSMLUG00000008769) CILP (ENSMLUG00000008793) ENSMLUG00000008817 ENSMLUG00000008591 ENSMLUG00000028492 ENSMLUG00000028574 ##22 IGDCC3 (ENSMLUG00000000621) IGDCC4 (ENSMLUG00000000632) DPP8 (ENSMLUG00000009434) ENSMLUG00000015087 INTS14 (ENSMLUG00000015095) SLC24A1 (ENSMLUG00000015104) DENND4A (ENSMLUG00000015110) ENSMLUG00000008820 MEGF11 (ENSMLUG00000008226) ENSMLUG00000022949 MAP2K1 (ENSMLUG00000011790) SNAPC5 (ENSMLUG00000011803) ENSMLUG00000011809 ZWILCH (ENSMLUG00000011819) LCTL (ENSMLUG00000011849) Sauria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Lepidosauria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Episquamata ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Toxicofera ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Elapidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Elapidae_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Acanthophiinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Mainland tiger snake MODERN SPECIES 19 RECQL5 (ENSNSUG00000014174) ENSNSUG00000014173 LLGL2 (ENSNSUG00000014142) TSEN54 (ENSNSUG00000014141) MCHR1 (ENSNSUG00000014140) ENSNSUG00000014139 ENSNSUG00000014138 TMEM94 (ENSNSUG00000014137) ENSNSUG00000014136 GRB2 (ENSNSUG00000014135) SLC25A19 (ENSNSUG00000014134) ENSNSUG00000014133 MRPS7 (ENSNSUG00000014132) ENSNSUG00000014131 ENSNSUG00000014130 SUMO4 (ENSNSUG00000014129) ##22 JPT1 (ENSNSUG00000014128) NT5C (ENSNSUG00000014127) ENSNSUG00000014126 SLC16A5 (ENSNSUG00000014125) ENSNSUG00000014124 NUP85 (ENSNSUG00000013476) ENSNSUG00000013473 ATP5PD (ENSNSUG00000013472) MRPL58 (ENSNSUG00000013470) CDR2L (ENSNSUG00000013469) HID1 (ENSNSUG00000013441) OTOP3 (ENSNSUG00000013440) OTOP2 (ENSNSUG00000013438) USH1G (ENSNSUG00000013415) FADS6 (ENSNSUG00000013414) Archelosauria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Cryptodira ANCESTRAL SPECIES 21 ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 Testudinoidea ANCESTRAL SPECIES 14 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582.`b.a ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Testudinidae ANCESTRAL SPECIES 18 ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582.`b.a ENSGT00390000003582.`b.b ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Goode s thornscrub tortoise MODERN SPECIES 6 SAP30BP (ENSGEVG00005018740) RECQL5 (ENSGEVG00005018858) SMIM5 (ENSGEVG00005018909) ENSGEVG00005018948 LLGL2 (ENSGEVG00005019084) TSEN54 (ENSGEVG00005019163) ENSGEVG00005019177 ENSGEVG00005019182 TMEM94 (ENSGEVG00005019206) GRB2 (ENSGEVG00005019279) SLC25A19 (ENSGEVG00005019291) MRPS7 (ENSGEVG00005019299) MIF4GD (ENSGEVG00005019312) GGA3 (ENSGEVG00005019325) NUP85 (ENSGEVG00005019343) SUMO4 (ENSGEVG00005019367) ##22 JPT1 (ENSGEVG00005019388) NT5C (ENSGEVG00005019398) ENSGEVG00005019408 SLC16A5 (ENSGEVG00005019415) ENSGEVG00005019450 KCTD2 (ENSGEVG00005019482) ATP5PD (ENSGEVG00005019496) MRPL58 (ENSGEVG00005019506) CDR2L (ENSGEVG00005019514) HID1 (ENSGEVG00005019525) OTOP3 (ENSGEVG00005019543) OTOP2 (ENSGEVG00005019569) USH1G (ENSGEVG00005019586) FADS6 (ENSGEVG00005019596) ENSGEVG00005019644 Abingdon island giant tortoise MODERN SPECIES 1719 SAP30BP (ENSCABG00000009689) RECQL5 (ENSCABG00000009692) SMIM5 (ENSCABG00000009698) ENSCABG00000009699 LLGL2 (ENSCABG00000009723) TSEN54 (ENSCABG00000010152) ENSCABG00000010157 ENSCABG00000010158 TMEM94 (ENSCABG00000010165) GRB2 (ENSCABG00000010719) SLC25A19 (ENSCABG00000010720) MIF4GD (ENSCABG00000010722) MRPS7 (ENSCABG00000010723) GGA3 (ENSCABG00000010726) NUP85 (ENSCABG00000010728) SUMO4 (ENSCABG00000010731) ##22 JPT1 (ENSCABG00000010734) NT5C (ENSCABG00000010736) ENSCABG00000010744 SLC16A5 (ENSCABG00000010748) ENSCABG00000010749 KCTD2 (ENSCABG00000010752) ENSCABG00000010753 ENSCABG00000010755 Archosauria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Aves ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Neognathae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Neognathae_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Passeriformes ANCESTRAL SPECIES 9 ENSGT00940000156474 ENSGT00940000153241.B #7 ENSGT01050000244976.b.b.b.a.a.b #8 ENSGT00940000160730 #9 ENSGT00460000041648 #10 ENSGT00940000159035 #11 ENSGT00940000162473 #12 ENSGT00900000141059 #14 ENSGT00940000155098 #15 ENSGT00940000158642 #16 ENSGT00940000153476.a #17 ENSGT01090000260100.B #18 ENSGT00940000160680 #19 ENSGT00940000156768 #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00940000158447 ENSGT00990000204467 ENSGT00530000063000.a.b.b ENSGT00940000154030.a.a ENSGT00940000158159 ENSGT00550000075086 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT01030000234590.A.a.a ENSGT00390000018687 ENSGT00940000153680.a Great tit MODERN SPECIES 29 ENSPMJG00000016503 ENSPMJG00000016504 #21 ENSPMJG00000016505 DGKG (ENSPMJG00000016506) #20 ETV5 (ENSPMJG00000016507) #19 BOK (ENSPMJG00000016508) #18 STK25 (ENSPMJG00000016509) #17 FARP2 (ENSPMJG00000016510) #16 CLSTN2 (ENSPMJG00000016511) NMNAT3 (ENSPMJG00000016512) RBP1 (ENSPMJG00000016513) RBP2 (ENSPMJG00000016514) COPB2 (ENSPMJG00000016515) MRPS22 (ENSPMJG00000016516) PIK3CB (ENSPMJG00000016518) ENSPMJG00000016519 ##22 UBE2G2 (ENSPMJG00000016520) #23 TSPEAR (ENSPMJG00000016521) #24 LRRC3 (ENSPMJG00000016522) TRPM2 (ENSPMJG00000016523) #25 THAP4 (ENSPMJG00000016524) ENSPMJG00000016525 ATG4B (ENSPMJG00000016526) DTYMK (ENSPMJG00000016527) ING5 (ENSPMJG00000016528) D2HGDH (ENSPMJG00000016529) GAL3ST2 (ENSPMJG00000016530) NEU4 (ENSPMJG00000016531) TM4SF19 (ENSPMJG00000016532) UBXN7 (ENSPMJG00000016533) RNF168 (ENSPMJG00000016534) Passeriformes_d ANCESTRAL SPECIES 10 ENSGT00940000156474 ENSGT00940000153241.B #7 ENSGT01050000244976.b.b.b.a.a.b #8 ENSGT00940000160730 #9 ENSGT00460000041648 #10 ENSGT00940000159035 #11 ENSGT00940000162473 #12 ENSGT00900000141059 #14 ENSGT00940000155098 #15 ENSGT00940000158642 #16 ENSGT00940000153476.a #17 ENSGT01090000260100.B #18 ENSGT00940000160680 #19 ENSGT00940000156768 #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00940000158447 ENSGT00530000063000.a.b.b ENSGT00940000154030.a.a ENSGT00940000158159 ENSGT00550000075086 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT01030000234590.A.a.a ENSGT00390000018687 ENSGT00940000153680.a ENSGT00390000011073 Passeriformes_g ANCESTRAL SPECIES 11 ENSGT00940000156474 ENSGT00940000153241.B #7 ENSGT01050000244976.b.b.b.a.a.b #8 ENSGT00940000160730 #9 ENSGT00460000041648 #10 ENSGT00940000159035 #11 ENSGT00940000162473 #12 ENSGT00900000141059 #14 ENSGT00940000155098 #15 ENSGT00940000158642 #16 ENSGT00940000153476.a #17 ENSGT01090000260100.B #18 ENSGT00940000160680 #19 ENSGT00940000156768 #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00940000158447 ENSGT00530000063000.a.b.b ENSGT00940000154030.a.a ENSGT00940000158159 ENSGT00550000075086 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT01030000234590.A.a.a ENSGT00390000018687 ENSGT00940000153680.a ENSGT00390000011073 Passeroidea ANCESTRAL SPECIES 13 ENSGT00940000156474 ENSGT00940000153241.B #7 ENSGT01050000244976.b.b.b.a.a.b #8 ENSGT00940000160730 #9 ENSGT00460000041648 #10 ENSGT00940000159035 #11 ENSGT00940000162473 #12 ENSGT00900000141059 #14 ENSGT00940000155098 #15 ENSGT00940000158642 #16 ENSGT00940000153476.a #17 ENSGT01090000260100.B #18 ENSGT00940000160680 #19 ENSGT00940000156768 #20 ENSGT00390000004977 #21 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000158193 #23 ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00940000158447 ENSGT00530000063000.a.b.b ENSGT00940000154030.a.a ENSGT00940000158159 ENSGT00550000075086 ENSGT00950000182923.B.a ENSGT00950000182944.B.a ENSGT01030000234590.A.a.a ENSGT00390000018687 ENSGT00940000153680.a ENSGT00390000011073 Common canary MODERN SPECIES 10 KLHL6 (ENSSCAG00000008863) #31 ENSSCAG00000008857 #30 AMER3 (ENSSCAG00000008855) #29 ENSSCAG00000008847 #28 FAM168B (ENSSCAG00000008842) #27 PLEKHB2 (ENSSCAG00000008839) #26 ENSSCAG00000008827 HS6ST1 (ENSSCAG00000008824) UGGT1 (ENSSCAG00000008787) SAP130 (ENSSCAG00000008766) AMMECR1L (ENSSCAG00000008762) POLR2D (ENSSCAG00000008758) WDR33 (ENSSCAG00000008715) ENSSCAG00000008687 ENSSCAG00000008683 ENSSCAG00000008679 ##22 UBE2G2 (ENSSCAG00000008635) #23 TSPEAR (ENSSCAG00000008617) #24 LRRC3 (ENSSCAG00000008609) TRPM2 (ENSSCAG00000008370) #25 ENSSCAG00000008302 THAP4 (ENSSCAG00000008294) ATG4B (ENSSCAG00000008031) DTYMK (ENSSCAG00000008012) ING5 (ENSSCAG00000008000) D2HGDH (ENSSCAG00000007988) GAL3ST2 (ENSSCAG00000007984) NEU4 (ENSSCAG00000007982) TM4SF19 (ENSSCAG00000007980) UBXN7 (ENSSCAG00000007974) RNF168 (ENSSCAG00000007972) Zebra finch MODERN SPECIES 31 KIF1A (ENSTGUG00000006326) AGXT (ENSTGUG00000006313) #7 MAB21L4 (ENSTGUG00000006305) #8 SNED1 (ENSTGUG00000006290) #9 MTERF4 (ENSTGUG00000029144) #10 PASK (ENSTGUG00000006279) #11 PPP1R7 (ENSTGUG00000006266) #12 HDLBP (ENSTGUG00000006189) #14 SEPTIN2 (ENSTGUG00000006160) #15 FARP2 (ENSTGUG00000006134) #16 STK25 (ENSTGUG00000006107) #17 BOK (ENSTGUG00000006098) #18 ETV5 (ENSTGUG00000006059) #19 DGKG (ENSTGUG00000006053) #20 ENSTGUG00000006048 #21 ENSTGUG00000025998 ##22 UBE2G2 (ENSTGUG00000018863) #23 TSPEAR (ENSTGUG00000006025) #24 LRRC3 (ENSTGUG00000006022) TRPM2 (ENSTGUG00000005963) #25 THAP4 (ENSTGUG00000005955) ATG4B (ENSTGUG00000005940) DTYMK (ENSTGUG00000005937) ING5 (ENSTGUG00000005928) D2HGDH (ENSTGUG00000005907) GAL3ST2 (ENSTGUG00000005898) NEU4 (ENSTGUG00000019131) TM4SF19 (ENSTGUG00000005895) UBXN7 (ENSTGUG00000005882) RNF168 (ENSTGUG00000005879) WDR53 (ENSTGUG00000020679) Medium ground finch MODERN SPECIES 83 ILKAP (ENSGFOG00000014165) KIF1A (ENSGFOG00000001286) AGXT (ENSGFOG00000000240) #7 MAB21L4 (ENSGFOG00000000231) #8 SNED1 (ENSGFOG00000000128) #9 PASK (ENSGFOG00000000087) #11 ENSGFOG00000000076 #12 HDLBP (ENSGFOG00000000071) #14 SEPTIN2 (ENSGFOG00000000062) #15 FARP2 (ENSGFOG00000000057) #16 STK25 (ENSGFOG00000000044) #17 BOK (ENSGFOG00000014160) #18 ETV5 (ENSGFOG00000014156) #19 DGKG (ENSGFOG00000014148) #20 ENSGFOG00000014145 #21 ENSGFOG00000014135 ##22 UBE2G2 (ENSGFOG00000014133) #23 TSPEAR (ENSGFOG00000014131) #24 TRPM2 (ENSGFOG00000014119) #25 THAP4 (ENSGFOG00000014109) ATG4B (ENSGFOG00000014102) DTYMK (ENSGFOG00000014094) ING5 (ENSGFOG00000014091) D2HGDH (ENSGFOG00000014089) GAL3ST2 (ENSGFOG00000014088) NEU4 (ENSGFOG00000014086) TM4SF19 (ENSGFOG00000014084) UBXN7 (ENSGFOG00000014083) RNF168 (ENSGFOG00000014080) WDR53 (ENSGFOG00000014079) FBXO45 (ENSGFOG00000014077) Actinopterygii ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Reedfish MODERN SPECIES 16 skia (ENSECRG00000006388) prkcz (ENSECRG00000006433) ENSECRG00000006445 ENSECRG00000006454 ENSECRG00000006461 GABRD (ENSECRG00000006467) ENSECRG00000006487 SLC35E2B (ENSECRG00000006499) ENSECRG00000006514 nadka (ENSECRG00000006520) ENSECRG00000006533 ENSECRG00000006545 CALML6 (ENSECRG00000006551) ENSECRG00000006609 ENSECRG00000006776 #21 ENSECRG00000006792 ##22 ube2g2 (ENSECRG00000006804) #23 TSPEAR (ENSECRG00000006827) #24 lrrc3 (ENSECRG00000006848) PFKL (ENSECRG00000006863) ENSECRG00000006874 USP40 (ENSECRG00000006897) ENSECRG00000006954 ENSECRG00000006982 dnajb11 (ENSECRG00000007004) tbccd1 (ENSECRG00000007033) crygs1 (ENSECRG00000007047) lcmt2 (ENSECRG00000007062) rab5b (ENSECRG00000007076) dbr1 (ENSECRG00000007101) ENSECRG00000007163 Neopterygii ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Osteoglossocephalai ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Osteoglossiformes ANCESTRAL SPECIES 41 ENSGT00940000165172.a ENSGT00530000064086.s ENSGT00940000155632.o ENSGT00550000075117.m.b ENSGT00940000155858.e ENSGT00940000155159.C.db ENSGT00440000038745.a.a.b ENSGT00530000063599.A ENSGT00530000063753.A.b ENSGT00940000158772.b ENSGT00940000154272.B.b ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a.g ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00950000182895.b.a.b ##22 ENSGT00940000164904.b ENSGT00540000073890.t ENSGT00940000157195.p ENSGT00940000157598.h.b ENSGT01030000235061.j ENSGT00730000111057.b ENSGT00390000005481 ENSGT00940000155641.g.a ENSGT00940000156498.g.a ENSGT00390000012364.a P. kingsleyae MODERN SPECIES 113 ntn1b (ENSPKIG00000023692) ENSPKIG00000023645 MCHR1 (ENSPKIG00000023612) GRB2 (ENSPKIG00000023597) slc25a19 (ENSPKIG00000023578) MIF4GD (ENSPKIG00000023565) NUP85 (ENSPKIG00000023507) ENSPKIG00000023479 ##22 jpt1b (ENSPKIG00000023468) ENSPKIG00000023437 SEPTIN9 (ENSPKIG00000023386) ENSPKIG00000023326 ENSPKIG00000023304 lclat1 (ENSPKIG00000023290) LBH (ENSPKIG00000023285) MDGA1 (ENSPKIG00000023231) zfand3 (ENSPKIG00000023185) btbd9 (ENSPKIG00000023142) glo1 (ENSPKIG00000023106) zgc:112001 (ENSPKIG00000023079) eprs1 (ENSPKIG00000023015) trmt61b (ENSPKIG00000022965) wdr43 (ENSPKIG00000022935) Clupeocephala ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Otomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Otophysi ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Cyprinoidei ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Cyprininae ANCESTRAL SPECIES 1153 ENSGT00940000157333.b.c ENSGT00390000000204.l.b ENSGT00950000182895.a.a.a.a.b ##22 Cyprininae_a ANCESTRAL SPECIES 310 ENSGT00390000012267.i ENSGT00940000160152 ENSGT00940000161195.a.a.c ENSGT00950000183144.B.bb ENSGT00940000163472.i.a.b.b.a.a.b.b.b.a.a.a.b.b.b ENSGT00940000157700.d.w ENSGT00530000063000.a.a.b.i.a ENSGT00950000182923.A.`b.a ENSGT00940000153578.A.e.b ENSGT00940000157864.a.b.a ENSGT00720000108861 ENSGT00940000155004.t.d ENSGT00390000013973.A.a.c.a.g.a.a.a ENSGT00940000157333.b.c ENSGT00390000000204.l.b ENSGT00950000182895.a.a.a.a.b ##22 Golden-line barbel MODERN SPECIES 1368 ENSSGRG00000017867 ENSSGRG00000017866 cygb1 (ENSSGRG00000017864) ENSSGRG00000017849 GGA3 (ENSSGRG00000017166) NUP85 (ENSSGRG00000016708) ENSSGRG00000016697 ##22 ENSSGRG00000016696 ENSSGRG00000016625 ENSSGRG00000016622 ENSSGRG00000016621 Euteleosteomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Protacanthopterygii ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Salmoninae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Salmoninae_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Salmo ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Atlantic salmon MODERN SPECIES 3 myh9a (ENSSSAG00000057247) slc25a38b (ENSSSAG00000113344) rpsa (ENSSSAG00000071292) ubn2a (ENSSSAG00000071311) ENSSSAG00000101624 ENSSSAG00000075362 PIK3R5 (ENSSSAG00000075389) ntn1a (ENSSSAG00000088846) stx8 (ENSSSAG00000075414) ENSSSAG00000099580 cfap52 (ENSSSAG00000075420) usp43a (ENSSSAG00000075430) ENSSSAG00000075448 grb2a (ENSSSAG00000111573) gga3a (ENSSSAG00000075472) ENSSSAG00000065582 ##22 jpt1a (ENSSSAG00000076171) ENSSSAG00000110018 ENSSSAG00000076184 septin9b (ENSSSAG00000076192) ENSSSAG00000091574 ENSSSAG00000076210 ENSSSAG00000086258 ZNF207 (ENSSSAG00000076235) ENSSSAG00000083659 rhot1b (ENSSSAG00000076267) ENSSSAG00000007919 ADAP2 (ENSSSAG00000076610) tefm (ENSSSAG00000076655) atad5b (ENSSSAG00000076659) suz12b (ENSSSAG00000005828) Acanthomorphata ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Euacanthomorphacea ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Pinecone sodierfish MODERN SPECIES 22 lmtk2 (ENSMMDG00005010302) pvalb5 (ENSMMDG00005010299) pvalb1 (ENSMMDG00005010298) pvalb4 (ENSMMDG00005010280) pvalb8 (ENSMMDG00005010277) aimp2 (ENSMMDG00005010275) ENSMMDG00005010274 cacng4b (ENSMMDG00005010273) CACNG1 (ENSMMDG00005010271) PITPNC1 (ENSMMDG00005010266) slc25a19 (ENSMMDG00005010265) mif4gda (ENSMMDG00005010263) mrps7 (ENSMMDG00005010262) GGA3 (ENSMMDG00005007472) NUP85 (ENSMMDG00005007021) ENSMMDG00005007004 ##22 jpt1b (ENSMMDG00005007001) ENSMMDG00005006999 ENSMMDG00005006996 septin9a (ENSMMDG00005006031) TNRC6C (ENSMMDG00005005790) ENSMMDG00005005755 ENSMMDG00005005744 znf207a (ENSMMDG00005005689) zgc:153240 (ENSMMDG00005005682) rhot1a (ENSMMDG00005000761) ENSMMDG00005000644 ENSMMDG00005000632 ENSMMDG00005000626 KHSRP (ENSMMDG00005000383) rfx1a (ENSMMDG00005000302) Percomorphaceae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Percomorphaceae_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Percomorphaceae_C ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Eupercaria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Eupecaria_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Eupecaria_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Eupecaria_C ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Eupercaria_incertae_sedis ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.a.b ##22 Large yellow croaker MODERN SPECIES 490 ENSLCRG00005017955 neurod1 (ENSLCRG00005017954) cerkl (ENSLCRG00005017953) ITGA4 (ENSLCRG00005017949) ENSLCRG00005017947 ENSLCRG00005017946 nr4a2a (ENSLCRG00005017945) KCNJ3 (ENSLCRG00005017944) GALNT13 (ENSLCRG00005017713) rprmb (ENSLCRG00005017705) prpf40a (ENSLCRG00005016144) ENSLCRG00005016128 FMNL2 (ENSLCRG00005012775) ENSLCRG00005012724 #22 ENSLCRG00005012722 ENSLCRG00005012718 ##22 ENSLCRG00005012717 #21 ENSLCRG00005012252 glb1l (ENSLCRG00005010230) ANKZF1 (ENSLCRG00005010191) ENSLCRG00005010188 ENSLCRG00005010183 tra2b (ENSLCRG00005010179) ENSLCRG00005010177 igf2bp2a (ENSLCRG00005009811) tmem41aa (ENSLCRG00005009808) ehhadh (ENSLCRG00005009806) zgc:162707 (ENSLCRG00005009805) nme9 (ENSLCRG00005009804) SMARCAL1 (ENSLCRG00005009591) COL6A2 (ENSLCRG00005009580) Euteleostomi ANCESTRAL SPECIES 527 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 Sarcopterygii ANCESTRAL SPECIES 968 ENSGT00390000004977 #21 ENSGT00950000182895.a.a.a.b ##22 Tetrapoda ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 Anura ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 Frog MODERN SPECIES 9 ENSXETG00000048710 map3k13 (ENSXETG00000032171) tmem41a (ENSXETG00000033905) ehhadh (ENSXETG00000031689) ENSXETG00000046098 c3orf70 (ENSXETG00000018612) vps8 (ENSXETG00000018613) ENSXETG00000049041 rpe (ENSXETG00000018617) dbr1 (ENSXETG00000027491) lrrc3 (ENSXETG00000044736) tspear (ENSXETG00000018624) #24 ENSXETG00000047418 ENSXETG00000049261 ube2g2 (ENSXETG00000018628) #23 sumo3 (ENSXETG00000027487) ##22 pttg1ip.1 (ENSXETG00000013285) #21 ENSXETG00000041619 itgb2 (ENSXETG00000018634) slx9 (ENSXETG00000018690) adarb1 (ENSXETG00000018692) pofut2 (ENSXETG00000018700) stat5b (ENSXETG00000001624) unc80 (ENSXETG00000023691) ENSXETG00000048787 ENSXETG00000045863 ENSXETG00000036906 adprh (ENSXETG00000001078) armc8 (ENSXETG00000001081) rab5d (ENSXETG00000001082) nme9 (ENSXETG00000001083) Amniota ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 Sauria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 Lepidosauria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 Episquamata ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 Toxicofera ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 Elapidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 Elapidae_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 Blue-lipped sea krait MODERN SPECIES 10378 ENSLLTG00000013883 ENSLLTG00000013890 ##22 Indian cobra MODERN SPECIES 3 MSL2 (ENSNNAG00000016055) STAG1 (ENSNNAG00000016070) PCCB (ENSNNAG00000016185) SLC35G2 (ENSNNAG00000016229) C3orf70 (ENSNNAG00000016233) EHHADH (ENSNNAG00000016242) MAP3K13 (ENSNNAG00000016254) ENSNNAG00000016269 SENP2 (ENSNNAG00000016282) IGF2BP2 (ENSNNAG00000016326) TRA2B (ENSNNAG00000016353) ETV5 (ENSNNAG00000016358) #19 ENSNNAG00000007567 #20 ENSNNAG00000007948 #20 ENSNNAG00000007992 #21 ENSNNAG00000008023 ##22 UBE2G2 (ENSNNAG00000008034) #23 TSPEAR (ENSNNAG00000008080) #24 LRRC3 (ENSNNAG00000008212) TRPM2 (ENSNNAG00000008307) #25 CFAP410 (ENSNNAG00000009469) PFKL (ENSNNAG00000009506) ENSNNAG00000009575 DNAJB11 (ENSNNAG00000009592) TBCCD1 (ENSNNAG00000009623) CRYGS (ENSNNAG00000009639) SOX14 (ENSNNAG00000009676) CLDN18 (ENSNNAG00000009692) ENSNNAG00000009734 A4GNT (ENSNNAG00000009808) EPHB1 (ENSNNAG00000009873) Archelosauria ANCESTRAL SPECIES 19 ENSGT00940000170136 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 Cryptodira ANCESTRAL SPECIES 21 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 Testudinoidea ANCESTRAL SPECIES 14 ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582.`b.a ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b Emydidae ANCESTRAL SPECIES 17 ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582.`b.a ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b painted turtle MODERN SPECIES 2409 SAP30BP (ENSCPBG00000028059) RECQL5 (ENSCPBG00000028060) SMIM5 (ENSCPBG00000028063) ENSCPBG00000028064 LLGL2 (ENSCPBG00000028068) TSEN54 (ENSCPBG00000028071) ENSCPBG00000028077 CASKIN2 (ENSCPBG00000028080) TMEM94 (ENSCPBG00000028092) GRB2 (ENSCPBG00000028101) SLC25A19 (ENSCPBG00000028103) MIF4GD (ENSCPBG00000028104) MRPS7 (ENSCPBG00000028105) GGA3 (ENSCPBG00000028108) NUP85 (ENSCPBG00000028114) ENSCPBG00000028117 ##22 ENSCPBG00000028119 ##22 JPT1 (ENSCPBG00000028120) NT5C (ENSCPBG00000028121) ENSCPBG00000028122 SLC16A5 (ENSCPBG00000028124) ENSCPBG00000028129 KCTD2 (ENSCPBG00000028133) ENSCPBG00000028136 ENSCPBG00000028137 ENSCPBG00000028140 MRPL58 (ENSCPBG00000028141) CDR2L (ENSCPBG00000028143) HID1 (ENSCPBG00000028144) OTOP3 (ENSCPBG00000028148) OTOP2 (ENSCPBG00000028150) Archosauria ANCESTRAL SPECIES 12 ENSGT00520000062027 ENSGT00940000157800 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 Aves ANCESTRAL SPECIES 17 ENSGT00520000062027 ENSGT00940000157800 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 Neognathae ANCESTRAL SPECIES 17 ENSGT00520000062027 ENSGT00940000157800 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b Neognathae_b ANCESTRAL SPECIES 19 ENSGT00520000062027 ENSGT00940000157800 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b Passeriformes ANCESTRAL SPECIES 17 ENSGT00940000157800 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158025.b ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.b #22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b Passeriformes_d ANCESTRAL SPECIES 17 ENSGT00390000007870.g.a ENSGT00940000157800 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.b #22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b Passeriformes_g ANCESTRAL SPECIES 20 ENSGT00520000062027 ENSGT00390000007870.g.a ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Passeroidea ANCESTRAL SPECIES 19 ENSGT00390000007870.h ENSGT00520000062027 ENSGT00390000007870.g.a ENSGT00940000157800 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000168469 ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b Zebra finch MODERN SPECIES 9 ITGB4 (ENSTGUG00000008343) ENSTGUG00000008426 RECQL5 (ENSTGUG00000008444) ENSTGUG00000008485 ENSTGUG00000008499 LLGL2 (ENSTGUG00000008523) TSEN54 (ENSTGUG00000008548) MCHR1 (ENSTGUG00000026892) CASKIN2 (ENSTGUG00000026779) TMEM94 (ENSTGUG00000008583) GRB2 (ENSTGUG00000008612) SLC25A19 (ENSTGUG00000018437) GGA3 (ENSTGUG00000008660) MRPS7 (ENSTGUG00000008655) NUP85 (ENSTGUG00000008703) ENSTGUG00000008727 ##22 JPT1 (ENSTGUG00000008735) ENSTGUG00000008742 SLC16A5 (ENSTGUG00000008745) ENSTGUG00000019539 ATP5PD (ENSTGUG00000025005) ENSTGUG00000008780 MRPL58 (ENSTGUG00000008783) CDR2L (ENSTGUG00000008790) HID1 (ENSTGUG00000008799) OTOP3 (ENSTGUG00000021952) USH1G (ENSTGUG00000018358) OTOP2 (ENSTGUG00000008818) FADS6 (ENSTGUG00000008836) GRIN2C (ENSTGUG00000008858) TMEM104 (ENSTGUG00000025589) Common canary MODERN SPECIES 27 SAP30BP (ENSSCAG00000001577) SMIM5 (ENSSCAG00000001569) RECQL5 (ENSSCAG00000001555) ENSSCAG00000001437 LLGL2 (ENSSCAG00000001376) TSEN54 (ENSSCAG00000001355) MCHR1 (ENSSCAG00000001349) ENSSCAG00000001325 TMEM94 (ENSSCAG00000000994) GRB2 (ENSSCAG00000000906) SLC25A19 (ENSSCAG00000000899) MIF4GD (ENSSCAG00000000886) MRPS7 (ENSSCAG00000000881) GGA3 (ENSSCAG00000000827) NUP85 (ENSSCAG00000000676) ENSSCAG00000000631 ##22 ENSSCAG00000000624 ##22 JPT1 (ENSSCAG00000000609) NT5C (ENSSCAG00000000603) ENSSCAG00000000595 SLC16A5 (ENSSCAG00000000589) KCTD2 (ENSSCAG00000000581) ATP5PD (ENSSCAG00000000575) MRPL58 (ENSSCAG00000000571) CDR2L (ENSSCAG00000000566) HID1 (ENSSCAG00000000556) OTOP3 (ENSSCAG00000000551) OTOP2 (ENSSCAG00000000544) USH1G (ENSSCAG00000000538) FADS6 (ENSSCAG00000000509) ENSSCAG00000000501 Mammalia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 Theria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 Marsupialia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 Marsupialia_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 Diprotodontia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 Diprotodontia_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 Common wonbat DUPLICATION Common wonbat DUPLICATION Common wonbat MODERN SPECIES 1018 ENSVURG00010021893 ENSVURG00010021888 ENSVURG00010021884 ENSVURG00010021840 ENSVURG00010021820 ENSVURG00010021811 CCDC148 (ENSVURG00010021806) ENSVURG00010021798 ENSVURG00010021789 ENSVURG00010021779 ENSVURG00010021773 ENSVURG00010021762 ENSVURG00010021748 ENSVURG00010021743 ENSVURG00010021736 ENSVURG00010021731 ##22 PLA2R1 (ENSVURG00010021721) ITGB6 (ENSVURG00010021713) RBMS1 (ENSVURG00010021700) TANK (ENSVURG00010021681) PSMD14 (ENSVURG00010021673) TBR1 (ENSVURG00010021666) ENSVURG00010021664 SLC4A10 (ENSVURG00010021610) DPP4 (ENSVURG00010021580) GCG (ENSVURG00010021569) FAP (ENSVURG00010021563) IFIH1 (ENSVURG00010021532) GCA (ENSVURG00010021519) KCNH7 (ENSVURG00010021492) FIGN (ENSVURG00010021488) Common wonbat MODERN SPECIES 1018 ENSVURG00010015850 ENSVURG00010015786 ENSVURG00010015774 ENSVURG00010015768 ENSVURG00010015714 ENSVURG00010015688 ENSVURG00010015137 ENSVURG00010015002 ENSVURG00010014961 ENSVURG00010014943 ENSVURG00010014928 ENSVURG00010004356 ENSVURG00010003796 ENSVURG00010003780 ENSVURG00010003645 ENSVURG00010003629 ##22 Common wonbat MODERN SPECIES 695 ENSVURG00010023861 ABCC4 (ENSVURG00010023864) SOX21 (ENSVURG00010023875) GPR180 (ENSVURG00010023877) DCT (ENSVURG00010023878) GPC6 (ENSVURG00010023883) ENSVURG00010023888 ENSVURG00010023899 ENSVURG00010023901 ENSVURG00010023902 SLITRK5 (ENSVURG00010023907) ENSVURG00010023908 ENSVURG00010023910 ENSVURG00010023911 SLITRK6 (ENSVURG00010023913) ENSVURG00010023917 ##22 ENSVURG00010023918 ENSVURG00010023919 SLITRK1 (ENSVURG00010023921) koala DUPLICATION koala DUPLICATION koala MODERN SPECIES 230 LRRC59 (ENSPCIG00000030228) ACSF2 (ENSPCIG00000030219) CHAD (ENSPCIG00000030226) RSAD1 (ENSPCIG00000030214) MYCBPAP (ENSPCIG00000030210) EPN3 (ENSPCIG00000030206) SPATA20 (ENSPCIG00000030204) ENSPCIG00000032449 CACNA1G (ENSPCIG00000030193) ENSPCIG00000030174 ANKRD40 (ENSPCIG00000012374) LUC7L3 (ENSPCIG00000012372) ENSPCIG00000030170 WFIKKN2 (ENSPCIG00000030168) TOB1 (ENSPCIG00000030166) ENSPCIG00000013674 ##22 SPAG9 (ENSPCIG00000022781) NME1 (ENSPCIG00000000603) NME2 (ENSPCIG00000031073) MBTD1 (ENSPCIG00000000651) UTP18 (ENSPCIG00000000695) ENSPCIG00000032327 CA10 (ENSPCIG00000000719) koala MODERN SPECIES 353 ENSPCIG00000006092 ENSPCIG00000006087 ENSPCIG00000006086 ENSPCIG00000006084 ENSPCIG00000006083 ENSPCIG00000032045 ENSPCIG00000006079 ENSPCIG00000006051 ENSPCIG00000006043 ENSPCIG00000033811 ENSPCIG00000019505 ENSPCIG00000007448 ENSPCIG00000014790 ##22 ENSPCIG00000033183 ENSPCIG00000007447 ENSPCIG00000008406 ENSPCIG00000033010 ENSPCIG00000019757 ENSPCIG00000019584 ENSPCIG00000034018 ENSPCIG00000001981 ENSPCIG00000032994 ENSPCIG00000007424 ENSPCIG00000008508 ENSPCIG00000005124 ENSPCIG00000034899 ENSPCIG00000034522 ENSPCIG00000034572 koala MODERN SPECIES 72 ENSPCIG00000031044 FBXL4 (ENSPCIG00000000383) FAXC (ENSPCIG00000000444) COQ3 (ENSPCIG00000000455) PNISR (ENSPCIG00000000469) USP45 (ENSPCIG00000000483) ENSPCIG00000000500 CCNC (ENSPCIG00000000512) ENSPCIG00000032972 MCHR2 (ENSPCIG00000031129) SIM1 (ENSPCIG00000013858) ASCC3 (ENSPCIG00000017288) ENSPCIG00000017283 GRIK2 (ENSPCIG00000017046) ENSPCIG00000033340 ENSPCIG00000012549 ##22 HACE1 (ENSPCIG00000014252) LIN28B (ENSPCIG00000019464) Eutheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 Atlantogenata ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 Xenarthra ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 Sloth MODERN SPECIES 6746 ENSCHOG00000010239 ##22 Boreoeutheria DUPLICATION Boreoeutheria DUPLICATION Boreoeutheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.a ##22 Laurasiatheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.a ##22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.a ##22 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.a ##22 Carnivora ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.a ##22 Caniformia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.a ##22 Canidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.a ##22 Canis_lupus ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.a ##22 Dingo DUPLICATION Dingo MODERN SPECIES 370 ENSCAFG00020008110 ENSCAFG00020008127 ENSCAFG00020008140 ENSCAFG00020008167 ENSCAFG00020008198 LMBRD1 (ENSCAFG00020008206) ENSCAFG00020008319 FAM135A (ENSCAFG00020008381) SDHAF4 (ENSCAFG00020009223) ENSCAFG00020009226 SMAP1 (ENSCAFG00020009239) ENSCAFG00020009243 ##22 ENSCAFG00020009249 OGFRL1 (ENSCAFG00020009281) RIMS1 (ENSCAFG00020009359) KCNQ5 (ENSCAFG00020009938) ENSCAFG00020010018 ENSCAFG00020010020 OOEP (ENSCAFG00020010023) ENSCAFG00020010029 CGAS (ENSCAFG00020010035) MTO1 (ENSCAFG00020010043) SLC17A5 (ENSCAFG00020010051) CD109 (ENSCAFG00020010059) ENSCAFG00020010371 COL12A1 (ENSCAFG00020010384) ENSCAFG00020010663 Dingo MODERN SPECIES 271 BATF3 (ENSCAFG00020013939) ENSCAFG00020013943 TATDN3 (ENSCAFG00020013945) SPATA45 (ENSCAFG00020013949) FLVCR1 (ENSCAFG00020013952) VASH2 (ENSCAFG00020013980) ANGEL2 (ENSCAFG00020013985) RPS6KC1 (ENSCAFG00020014029) ENSCAFG00020014356 ENSCAFG00020014358 SMYD2 (ENSCAFG00020014364) PTPN14 (ENSCAFG00020014374) ENSCAFG00020014420 ENSCAFG00020014427 KCNK2 (ENSCAFG00020014440) ENSCAFG00020014457 ##22 TOR1AIP2 (ENSCAFG00020014460) ENSCAFG00020014461 TOR1AIP1 (ENSCAFG00020014463) ENSCAFG00020014465 CEP350 (ENSCAFG00020014473) QSOX1 (ENSCAFG00020014546) LHX4 (ENSCAFG00020014557) ACBD6 (ENSCAFG00020014559) ENSCAFG00020014563 XPR1 (ENSCAFG00020014566) KIAA1614 (ENSCAFG00020014576) ENSCAFG00020014582 ENSCAFG00020014585 IER5 (ENSCAFG00020014586) CACNA1E (ENSCAFG00020014625) Artiodactyla ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.a ##22 Artiodactyla_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.a ##22 Camelidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.a ##22 Arabian camel MODERN SPECIES 30 ENSCDRG00005013199 ENSCDRG00005013038 ENSCDRG00005013005 TLR4 (ENSCDRG00005012955) BRINP1 (ENSCDRG00005012875) CDK5RAP2 (ENSCDRG00005012283) MEGF9 (ENSCDRG00005012191) FBXW2 (ENSCDRG00005012142) B3GALT9 (ENSCDRG00005012109) PSMD5 (ENSCDRG00005012041) ENSCDRG00005011996 PHF19 (ENSCDRG00005011924) TRAF1 (ENSCDRG00005011825) C5 (ENSCDRG00005011738) ENSCDRG00005011689 ENSCDRG00005011667 ##22 CNTRL (ENSCDRG00005010958) RAB14 (ENSCDRG00005010819) GSN (ENSCDRG00005010665) STOM (ENSCDRG00005010606) ENSCDRG00005010541 ENSCDRG00005010501 ENSCDRG00005010363 DAB2IP (ENSCDRG00005010118) TTLL11 (ENSCDRG00005009896) NDUFA8 (ENSCDRG00005009831) MORN5 (ENSCDRG00005009722) LHX6 (ENSCDRG00005009193) RBM18 (ENSCDRG00005009114) MRRF (ENSCDRG00005008841) PTGS1 (ENSCDRG00005008480) Boreoeutheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.b ##22 Laurasiatheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.b ##22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.b ##22 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.b ##22 Carnivora ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.b ##22 Caniformia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.b ##22 Canidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.b ##22 Canis_lupus ANCESTRAL SPECIES 34 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000181148 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00390000008902.i.a.a.b ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.b.a.a.d ##22 ENSGT00940000164037 ENSGT00950000182895.a.a.a.b.e.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.q.a.b.a.a.b.a ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Dingo MODERN SPECIES 68 SMIM5 (ENSCAFG00020000833) RECQL5 (ENSCAFG00020000819) ENSCAFG00020000371 LLGL2 (ENSCAFG00020000323) TSEN54 (ENSCAFG00020000312) CASKIN2 (ENSCAFG00020000304) TMEM94 (ENSCAFG00020000293) ENSCAFG00020000272 GRB2 (ENSCAFG00020000264) SLC25A19 (ENSCAFG00020000256) MIF4GD (ENSCAFG00020000237) MRPS7 (ENSCAFG00020000224) ENSCAFG00020000214 GGA3 (ENSCAFG00020000185) NUP85 (ENSCAFG00020000147) ENSCAFG00020021913 ##22 JPT1 (ENSCAFG00020021912) NT5C (ENSCAFG00020021907) ARMC7 (ENSCAFG00020021902) SLC16A5 (ENSCAFG00020021901) ENSCAFG00020021896 KCTD2 (ENSCAFG00020021893) ENSCAFG00020021891 MRPL58 (ENSCAFG00020021889) CDR2L (ENSCAFG00020021886) HID1 (ENSCAFG00020021881) OTOP3 (ENSCAFG00020021873) OTOP2 (ENSCAFG00020021866) USH1G (ENSCAFG00020021864) FADS6 (ENSCAFG00020021860) FDXR (ENSCAFG00020021859) Euarchontoglires ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.b ##22 Primates ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.b ##22 Haplorrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.b ##22 Simiiformes ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.b ##22 Catarrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.b ##22 Cercopithecidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.b ##22 Cercopithecinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.b ##22 Vervet Monkey MODERN SPECIES 26 SRP72 (ENSCSAG00000005079) ARL9 (ENSCSAG00000005100) THEGL (ENSCSAG00000005107) HOPX (ENSCSAG00000005112) ENSCSAG00000005117 REST (ENSCSAG00000005119) POLR2B (ENSCSAG00000005130) ENSCSAG00000000426 IGFBP7 (ENSCSAG00000005138) ENSCSAG00000005140 ADGRL3 (ENSCSAG00000005151) TECRL (ENSCSAG00000005163) EPHA5 (ENSCSAG00000005186) ENSCSAG00000000427 ENSCSAG00000000428 ENSCSAG00000005197 ##22 CENPC (ENSCSAG00000005202) STAP1 (ENSCSAG00000005207) UBA6 (ENSCSAG00000005213) GNRHR (ENSCSAG00000005216) TMPRSS11D (ENSCSAG00000005222) TMPRSS11A (ENSCSAG00000005227) TMPRSS11F (ENSCSAG00000005238) ENSCSAG00000000429 TMPRSS11B (ENSCSAG00000005243) YTHDC1 (ENSCSAG00000005252) TMPRSS11E (ENSCSAG00000005260) ENSCSAG00000005264 ENSCSAG00000005268 ENSCSAG00000005272 Hominoidea ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.b ##22 Hominidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.b ##22 Homo/Pan/Gorilla group ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.e.b ##22 Gorilla DUPLICATION Gorilla MODERN SPECIES 18 ENSGGOG00000036288 NGFR (ENSGGOG00000008434) ENSGGOG00000037188 PHB (ENSGGOG00000028002) ZNF652 (ENSGGOG00000010288) PHOSPHO1 (ENSGGOG00000001957) ABI3 (ENSGGOG00000001954) ENSGGOG00000001953 B4GALNT2 (ENSGGOG00000008204) IGF2BP1 (ENSGGOG00000008872) GIP (ENSGGOG00000013847) SNF8 (ENSGGOG00000025290) ENSGGOG00000041818 ENSGGOG00000041027 ATP5MC1 (ENSGGOG00000001626) ENSGGOG00000040493 ##22 CALCOCO2 (ENSGGOG00000005537) TTLL6 (ENSGGOG00000001947) HOXB13 (ENSGGOG00000001945) ENSGGOG00000042122 PRAC1 (ENSGGOG00000027105) ENSGGOG00000036688 HOXB8 (ENSGGOG00000039810) HOXB7 (ENSGGOG00000002637) HOXB6 (ENSGGOG00000002634) HOXB5 (ENSGGOG00000023582) HOXB3 (ENSGGOG00000012838) HOXB2 (ENSGGOG00000009910) HOXB1 (ENSGGOG00000009904) SKAP1 (ENSGGOG00000012624) ENSGGOG00000025896 Gorilla MODERN SPECIES 523 KIAA1210 (ENSGGOG00000025414) CT47C1 (ENSGGOG00000016359) LONRF3 (ENSGGOG00000013667) ENSGGOG00000000535 ZCCHC12 (ENSGGOG00000044194) IL13RA1 (ENSGGOG00000014651) ENSGGOG00000037465 DOCK11 (ENSGGOG00000014811) WDR44 (ENSGGOG00000003190) KLHL13 (ENSGGOG00000025384) ENSGGOG00000043839 CT83 (ENSGGOG00000027593) SLC6A14 (ENSGGOG00000010824) AGTR2 (ENSGGOG00000041235) ENSGGOG00000039348 ENSGGOG00000026147 ##22 ENSGGOG00000043307 PLS3 (ENSGGOG00000008810) ENSGGOG00000028364 RBMXL3 (ENSGGOG00000027260) LRCH2 (ENSGGOG00000001918) IL13RA2 (ENSGGOG00000012153) HTR2C (ENSGGOG00000043401) AMOT (ENSGGOG00000011142) LHFPL1 (ENSGGOG00000010356) TRPC5OS (ENSGGOG00000040904) TRPC5 (ENSGGOG00000015892) ALG13 (ENSGGOG00000010402) ENSGGOG00000037011 SERTM2 (ENSGGOG00000036792) DCX (ENSGGOG00000038714) Boreoeutheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Laurasiatheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Laurasiatheria_c ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Chiroptera ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Microchiroptera ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Microbat MODERN SPECIES 1010 ARF5 (ENSMLUG00000017122) GCC1 (ENSMLUG00000017118) ENSMLUG00000023252 ZNF800 (ENSMLUG00000011636) GRM8 (ENSMLUG00000011612) POT1 (ENSMLUG00000001872) SPAM1 (ENSMLUG00000012742) HYAL4 (ENSMLUG00000022537) ENSMLUG00000024052 WASL (ENSMLUG00000014937) LMOD2 (ENSMLUG00000014932) ASB15 (ENSMLUG00000014924) IQUB (ENSMLUG00000001027) SLC13A1 (ENSMLUG00000001020) TAS2R16 (ENSMLUG00000014220) ENSMLUG00000024279 ##22 ENSMLUG00000026399 RNF148 (ENSMLUG00000030104) RNF133 (ENSMLUG00000005094) CADPS2 (ENSMLUG00000005076) FEZF1 (ENSMLUG00000005067) ENSMLUG00000004562 AASS (ENSMLUG00000015957) PTPRZ1 (ENSMLUG00000013471) Equus ANCESTRAL SPECIES 5 ENSGT01060000248592.B ENSGT01060000248592.E ENSGT00940000158290 ENSGT00940000161405 ENSGT00940000155975.j ENSGT01030000234621.A ENSGT00950000182897.B.a.a ENSGT01030000234621.B ENSGT00940000160283 ENSGT01030000234571.a.a ENSGT00940000156903 ENSGT00390000003715 ENSGT00940000156745 ENSGT01080000259939 ENSGT00940000157185 ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00390000004493 ENSGT00940000154019.a ENSGT00390000006591 ENSGT00940000160473 Horse MODERN SPECIES 7 AADAC (ENSECAG00000024051) ENSECAG00000027989 ENSECAG00000042933 SUCNR1 (ENSECAG00000024345) MBNL1 (ENSECAG00000024349) P2RY1 (ENSECAG00000001845) RAP2B (ENSECAG00000024986) ARHGEF26 (ENSECAG00000025019) ENSECAG00000023848 DHX36 (ENSECAG00000025100) GPR149 (ENSECAG00000009123) ENSECAG00000054272 MME (ENSECAG00000009138) ENSECAG00000039581 PLCH1 (ENSECAG00000016623) ENSECAG00000001897 ##22 C3orf33 (ENSECAG00000053423) SLC33A1 (ENSECAG00000022461) GMPS (ENSECAG00000023269) ENSECAG00000024575 Donkey MODERN SPECIES 13 ENSEASG00005020765 AADACL2 (ENSEASG00005020769) ENSEASG00005020751 ENSEASG00005035766 AADAC (ENSEASG00005025316) SUCNR1 (ENSEASG00005025304) MBNL1 (ENSEASG00005020731) P2RY1 (ENSEASG00005025565) RAP2B (ENSEASG00005034390) ARHGEF26 (ENSEASG00005020696) DHX36 (ENSEASG00005020682) GPR149 (ENSEASG00005020678) MME (ENSEASG00005022266) ENSEASG00005038568 PLCH1 (ENSEASG00005022484) ENSEASG00005022500 ##22 C3orf33 (ENSEASG00005022502) SLC33A1 (ENSEASG00005022505) ENSEASG00005022509 ENSEASG00005022521 ENSEASG00005012008 ECT2L (ENSEASG00005012001) CCDC28A (ENSEASG00005011995) ENSEASG00005037446 ENSEASG00005028125 HEBP2 (ENSEASG00005034494) SMIM28 (ENSEASG00005028436) ARFGEF3 (ENSEASG00005011767) ENSEASG00005034498 TNFAIP3 (ENSEASG00005011724) OLIG3 (ENSEASG00005011723) Carnivora ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Felidae ANCESTRAL SPECIES 89 ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00940000164037 Panthera ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Panthera_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 lion MODERN SPECIES 169 ENSPLOG00000020276 #21 ENSPLOG00000020318 ##22 UBE2G2 (ENSPLOG00000015255) #23 ENSPLOG00000015358 ENSPLOG00000015424 ENSPLOG00000015873 Tiger MODERN SPECIES 307 PCBP3 (ENSPTIG00000012038) POFUT2 (ENSPTIG00000011476) ADARB1 (ENSPTIG00000007673) ENSPTIG00000007408 ITGB2 (ENSPTIG00000021415) ENSPTIG00000021258 #21 ENSPTIG00000020555 ##22 UBE2G2 (ENSPTIG00000020440) #23 ENSPTIG00000020358 ENSPTIG00000020241 TSPEAR (ENSPTIG00000018683) #24 TRPM2 (ENSPTIG00000012361) #25 PFKL (ENSPTIG00000011121) DNMT3L (ENSPTIG00000009725) ICOSLG (ENSPTIG00000008688) GATD3 (ENSPTIG00000008371) PWP2 (ENSPTIG00000020872) TRAPPC10 (ENSPTIG00000020068) RRP1 (ENSPTIG00000019473) CSTB (ENSPTIG00000019016) PDXK (ENSPTIG00000018587) RRP1B (ENSPTIG00000016894) Cat DUPLICATION Cat MODERN SPECIES 252 RAB9B (ENSFCAG00000000424) H2BW2 (ENSFCAG00000003808) ENSFCAG00000044466 SLC25A53 (ENSFCAG00000031124) ENSFCAG00000046918 FAM199X (ENSFCAG00000042435) ENSFCAG00000007095 IL1RAPL2 (ENSFCAG00000044125) ENSFCAG00000042177 ENSFCAG00000024474 NRK (ENSFCAG00000031086) SERPINA7 (ENSFCAG00000002394) ENSFCAG00000048690 ENSFCAG00000046901 ENSFCAG00000034223 ENSFCAG00000029017 ##22 RADX (ENSFCAG00000022088) TBC1D8B (ENSFCAG00000022098) RIPPLY1 (ENSFCAG00000037438) CLDN2 (ENSFCAG00000014644) MORC4 (ENSFCAG00000005925) RBM41 (ENSFCAG00000001982) ENSFCAG00000001984 DNAAF6 (ENSFCAG00000027609) ENSFCAG00000034129 FRMPD3 (ENSFCAG00000024792) PRPS1 (ENSFCAG00000012286) TSC22D3 (ENSFCAG00000022573) ENSFCAG00000051141 MID2 (ENSFCAG00000000671) ENSFCAG00000053112 Cat MODERN SPECIES 245 ENSFCAG00000051160 SMIM6 (ENSFCAG00000044791) SMIM5 (ENSFCAG00000029987) RECQL5 (ENSFCAG00000005751) MYO15B (ENSFCAG00000005749) LLGL2 (ENSFCAG00000005747) TSEN54 (ENSFCAG00000023712) CASKIN2 (ENSFCAG00000005745) TMEM94 (ENSFCAG00000005744) GRB2 (ENSFCAG00000022474) SLC25A19 (ENSFCAG00000014520) MIF4GD (ENSFCAG00000014518) MRPS7 (ENSFCAG00000034153) GGA3 (ENSFCAG00000014514) NUP85 (ENSFCAG00000014513) ENSFCAG00000002945 ##22 JPT1 (ENSFCAG00000014512) NT5C (ENSFCAG00000033451) ARMC7 (ENSFCAG00000029665) SLC16A5 (ENSFCAG00000014507) ENSFCAG00000028970 KCTD2 (ENSFCAG00000022004) ATP5PD (ENSFCAG00000022888) MRPL58 (ENSFCAG00000035293) CDR2L (ENSFCAG00000030551) HID1 (ENSFCAG00000026702) OTOP3 (ENSFCAG00000000988) USH1G (ENSFCAG00000025730) OTOP2 (ENSFCAG00000014892) FADS6 (ENSFCAG00000030063) FDXR (ENSFCAG00000007529) Caniformia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Caniformia_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Ursidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Ursus ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 American black bear MODERN SPECIES 979 SLX9 (ENSUAMG00000026114) ITGB2 (ENSUAMG00000026115) ENSUAMG00000026490 #21 ENSUAMG00000026491 ##22 UBE2G2 (ENSUAMG00000026492) #23 Canidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Red fox MODERN SPECIES 209 YBEY (ENSVVUG00000022948) MCM3AP (ENSVVUG00000022975) LSS (ENSVVUG00000023711) SPATC1L (ENSVVUG00000023836) FTCD (ENSVVUG00000023843) COL6A2 (ENSVVUG00000023847) ENSVVUG00000023855 PCBP3 (ENSVVUG00000023862) SLC19A1 (ENSVVUG00000023875) POFUT2 (ENSVVUG00000023908) ADARB1 (ENSVVUG00000023911) ENSVVUG00000023915 ENSVVUG00000023917 ENSVVUG00000023920 PTTG1IP (ENSVVUG00000023922) #21 ENSVVUG00000023925 ##22 UBE2G2 (ENSVVUG00000023926) #23 TSPEAR (ENSVVUG00000023929) #24 ENSVVUG00000023932 ENSVVUG00000023934 ENSVVUG00000023938 ENSVVUG00000023950 ENSVVUG00000023954 ENSVVUG00000023958 ENSVVUG00000023974 ENSVVUG00000023984 ENSVVUG00000024023 LRRC3 (ENSVVUG00000024026) ENSVVUG00000024028 #25 ENSVVUG00000024038 #25 CFAP410 (ENSVVUG00000024040) Canis_lupus ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Dog MODERN SPECIES 35 ENSCAFG00845001121 FLVCR1 (ENSCAFG00845001151) ENSCAFG00845001182 VASH2 (ENSCAFG00845001231) ANGEL2 (ENSCAFG00845001293) RPS6KC1 (ENSCAFG00845001399) PROX1 (ENSCAFG00845001606) SMYD2 (ENSCAFG00845001630) ENSCAFG00845001638 PTPN14 (ENSCAFG00845001665) CENPF (ENSCAFG00845001752) ENSCAFG00845001892 ENSCAFG00845001932 ENSCAFG00845001949 ENSCAFG00845001973 ##22 ENSCAFG00845001988 ##22 ENSCAFG00845002008 TOR1AIP1 (ENSCAFG00845002082) CEP350 (ENSCAFG00845002165) ENSCAFG00845002252 QSOX1 (ENSCAFG00845002288) LHX4 (ENSCAFG00845002410) ACBD6 (ENSCAFG00845002431) ENSCAFG00845002447 XPR1 (ENSCAFG00845002485) KIAA1614 (ENSCAFG00845002551) STX6 (ENSCAFG00845002602) ENSCAFG00845002628 CACNA1E (ENSCAFG00845003292) ZNF648 (ENSCAFG00845003989) GLUL (ENSCAFG00845004011) Dingo DUPLICATION Dingo MODERN SPECIES 63 YBEY (ENSCAFG00020019514) MCM3AP (ENSCAFG00020019509) LSS (ENSCAFG00020019508) SPATC1L (ENSCAFG00020019504) FTCD (ENSCAFG00020019496) COL6A2 (ENSCAFG00020019491) ENSCAFG00020019481 ENSCAFG00020019472 SLC19A1 (ENSCAFG00020019465) ENSCAFG00020019463 POFUT2 (ENSCAFG00020019455) ADARB1 (ENSCAFG00020019446) SLX9 (ENSCAFG00020019440) ITGB2 (ENSCAFG00020019439) PTTG1IP (ENSCAFG00020019438) #21 ENSCAFG00020019434 ##22 UBE2G2 (ENSCAFG00020019431) #23 ENSCAFG00020019428 ENSCAFG00020019403 ENSCAFG00020019392 ENSCAFG00020019389 ENSCAFG00020019386 ENSCAFG00020019341 ENSCAFG00020019310 ENSCAFG00020019303 ENSCAFG00020019289 TSPEAR (ENSCAFG00020019277) #24 LRRC3 (ENSCAFG00020019276) TRPM2 (ENSCAFG00020019262) #25 CFAP410 (ENSCAFG00020019259) PFKL (ENSCAFG00020019252) Dingo MODERN SPECIES 73 WWC2 (ENSCAFG00020002263) ENSCAFG00020002247 ENSCAFG00020002243 CDKN2AIP (ENSCAFG00020002238) ING2 (ENSCAFG00020002237) ENSCAFG00020002212 TRAPPC11 (ENSCAFG00020001993) STOX2 (ENSCAFG00020001963) ENPP6 (ENSCAFG00020001941) IRF2 (ENSCAFG00020001931) CASP3 (ENSCAFG00020001926) PRIMPOL (ENSCAFG00020001918) CENPU (ENSCAFG00020001909) ACSL1 (ENSCAFG00020001881) ENSCAFG00020001873 ENSCAFG00020001869 ##22 HELT (ENSCAFG00020001861) SLC25A4 (ENSCAFG00020001854) CFAP97 (ENSCAFG00020001848) SNX25 (ENSCAFG00020001133) LRP2BP (ENSCAFG00020001025) ANKRD37 (ENSCAFG00020001012) UFSP2 (ENSCAFG00020000992) C4orf47 (ENSCAFG00020000984) ENSCAFG00020000959 PDLIM3 (ENSCAFG00020000952) ENSCAFG00020000924 TLR3 (ENSCAFG00020000542) ENSCAFG00020000507 CYP4V2 (ENSCAFG00020000502) KLKB1 (ENSCAFG00020000492) Artiodactyla ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Artiodactyla_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Camelidae ANCESTRAL SPECIES ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000163601 ENSGT00940000162768.B ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00940000158193 #23 ENSGT00940000163441.f.a.b.c.a.a ENSGT00940000163441.f.a.a.b ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 ENSGT00940000161590 ENSGT00390000003706.a.a ENSGT00550000074981 ENSGT00390000003873 ENSGT00950000182836.b.b.b.a Arabian camel MODERN SPECIES ENSCDRG00005000062 MCM3AP (ENSCDRG00005021907) LSS (ENSCDRG00005021905) SPATC1L (ENSCDRG00005021904) FTCD (ENSCDRG00005021903) COL6A2 (ENSCDRG00005021902) ENSCDRG00005021895 ENSCDRG00005021894 ENSCDRG00005021892 ENSCDRG00005021890 ENSCDRG00005021889 ADARB1 (ENSCDRG00005021888) SLX9 (ENSCDRG00005021887) ITGB2 (ENSCDRG00005021886) PTTG1IP (ENSCDRG00005021882) #21 ENSCDRG00005021881 ##22 UBE2G2 (ENSCDRG00005021880) #23 ENSCDRG00005021878 ENSCDRG00005021877 TSPEAR (ENSCDRG00005021875) #24 LRRC3 (ENSCDRG00005021874) TRPM2 (ENSCDRG00005021872) #25 CFAP410 (ENSCDRG00005021870) PFKL (ENSCDRG00005015587) AIRE (ENSCDRG00005014671) DNMT3L (ENSCDRG00005014446) ENSCDRG00005014322 GATD3 (ENSCDRG00005013830) PWP2 (ENSCDRG00005013718) TRAPPC10 (ENSCDRG00005013577) AGPAT3 (ENSCDRG00005013408) Artiodactyla_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Pecora ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Yarkand deer MODERN SPECIES 10 MCM3AP (ENSCHYG00000018660) LSS (ENSCHYG00000018157) SPATC1L (ENSCHYG00000018089) FTCD (ENSCHYG00000017995) COL6A2 (ENSCHYG00000016288) COL6A1 (ENSCHYG00000015735) ENSCHYG00000015578 PCBP3 (ENSCHYG00000015231) SLC19A1 (ENSCHYG00000014939) ENSCHYG00000013809 POFUT2 (ENSCHYG00000013580) ADARB1 (ENSCHYG00000013492) SLX9 (ENSCHYG00000013417) ITGB2 (ENSCHYG00000013305) ENSCHYG00000013199 #21 ENSCHYG00000013089 ##22 UBE2G2 (ENSCHYG00000013008) #23 ENSCHYG00000012823 ENSCHYG00000012777 ENSCHYG00000012757 ENSCHYG00000012743 ENSCHYG00000012727 ENSCHYG00000012689 TSPEAR (ENSCHYG00000012613) #24 LRRC3 (ENSCHYG00000012591) TRPM2 (ENSCHYG00000012131) #25 ENSCHYG00000012006 PFKL (ENSCHYG00000011737) ENSCHYG00000011682 AIRE (ENSCHYG00000011590) DNMT3L (ENSCHYG00000011454) Percora_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Siberian musk deer MODERN SPECIES 1185 LSS (ENSMMSG00000013009) SPATC1L (ENSMMSG00000012984) FTCD (ENSMMSG00000012880) COL6A2 (ENSMMSG00000013324) ENSMMSG00000013286 ENSMMSG00000013267 PCBP3 (ENSMMSG00000013149) SLC19A1 (ENSMMSG00000013111) COL18A1 (ENSMMSG00000013041) POFUT2 (ENSMMSG00000012988) ADARB1 (ENSMMSG00000012958) ENSMMSG00000012948 SLX9 (ENSMMSG00000012926) ITGB2 (ENSMMSG00000012884) PTTG1IP (ENSMMSG00000012844) #21 ENSMMSG00000012808 ##22 UBE2G2 (ENSMMSG00000012781) #23 ENSMMSG00000012769 ENSMMSG00000012755 ENSMMSG00000012739 ENSMMSG00000012713 ENSMMSG00000012695 ENSMMSG00000012659 ENSMMSG00000012645 TSPEAR (ENSMMSG00000012606) #24 LRRC3 (ENSMMSG00000012592) TRPM2 (ENSMMSG00000012263) #25 CFAP410 (ENSMMSG00000012203) PFKL (ENSMMSG00000012144) AIRE (ENSMMSG00000012088) ENSMMSG00000012064 Bovidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Caprinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Rambouillet Sheep MODERN SPECIES SPATC1L (ENSOARG00020008907) FTCD (ENSOARG00020008875) COL6A2 (ENSOARG00020008627) ENSOARG00020008540 ENSOARG00020008499 PCBP3 (ENSOARG00020007496) ENSOARG00020007438 SLC19A1 (ENSOARG00020007403) COL18A1 (ENSOARG00020007293) POFUT2 (ENSOARG00020007231) ADARB1 (ENSOARG00020007192) SLX9 (ENSOARG00020007156) ITGB2 (ENSOARG00020007059) ENSOARG00020007039 PTTG1IP (ENSOARG00020006978) #21 ENSOARG00020006904 ##22 UBE2G2 (ENSOARG00020006852) #23 ENSOARG00020006827 ENSOARG00020006779 ENSOARG00020006757 ENSOARG00020006738 ENSOARG00020006710 ENSOARG00020006689 ENSOARG00020006650 ENSOARG00020006492 ENSOARG00020006471 ENSOARG00020015156 TSPEAR (ENSOARG00020015029) #24 LRRC3 (ENSOARG00020014996) TRPM2 (ENSOARG00020014481) #25 ENSOARG00020014423 Bovinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Bos ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Bos_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Hybrid Bos Indicus MODERN SPECIES YBEY (ENSBIXG00005018157) MCM3AP (ENSBIXG00005018185) LSS (ENSBIXG00005018442) SPATC1L (ENSBIXG00005018481) FTCD (ENSBIXG00005018494) COL6A2 (ENSBIXG00005006450) ENSBIXG00005018619 PCBP3 (ENSBIXG00005018711) SLC19A1 (ENSBIXG00005018773) COL18A1 (ENSBIXG00005018920) POFUT2 (ENSBIXG00005019083) ADARB1 (ENSBIXG00005019197) SLX9 (ENSBIXG00005019260) ITGB2 (ENSBIXG00005019335) PTTG1IP (ENSBIXG00005019381) #21 ENSBIXG00005019400 ##22 UBE2G2 (ENSBIXG00005019436) #23 ENSBIXG00005019459 ENSBIXG00005019473 ENSBIXG00005019480 ENSBIXG00005006032 ENSBIXG00005019504 ENSBIXG00005019524 ENSBIXG00005019546 TSPEAR (ENSBIXG00005006878) #24 LRRC3 (ENSBIXG00005019626) TRPM2 (ENSBIXG00005003229) #25 CFAP410 (ENSBIXG00005019772) PFKL (ENSBIXG00005000029) ENSBIXG00005019827 AIRE (ENSBIXG00005019950) Bos_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Wild yak MODERN SPECIES 691 WEE1 (ENSBMUG00000003354) ENSBMUG00000003309 ZNF143 (ENSBMUG00000003242) IPO7 (ENSBMUG00000003035) ENSBMUG00000003002 TMEM41B (ENSBMUG00000002989) ENSBMUG00000002935 DENND5A (ENSBMUG00000002903) SCUBE2 (ENSBMUG00000002783) NRIP3 (ENSBMUG00000002476) TMEM9B (ENSBMUG00000002442) ENSBMUG00000002400 ##22 ASCL3 (ENSBMUG00000002383) C11orf16 (ENSBMUG00000002370) AKIP1 (ENSBMUG00000002324) DENND2B (ENSBMUG00000002008) RPL27A (ENSBMUG00000001637) TRIM66 (ENSBMUG00000001528) Domestic yak MODERN SPECIES ENSBGRG00000001586 MCM3AP (ENSBGRG00000001560) LSS (ENSBGRG00000001100) SPATC1L (ENSBGRG00000001038) FTCD (ENSBGRG00000000949) COL6A2 (ENSBGRG00000000863) COL6A1 (ENSBGRG00000000813) PCBP3 (ENSBGRG00000000669) ENSBGRG00000000644 SLC19A1 (ENSBGRG00000000631) POFUT2 (ENSBGRG00000000326) ADARB1 (ENSBGRG00000000280) SLX9 (ENSBGRG00000000257) ITGB2 (ENSBGRG00000000208) PTTG1IP (ENSBGRG00000000193) #21 ENSBGRG00000000186 ##22 UBE2G2 (ENSBGRG00000000181) #23 ENSBGRG00000000176 ENSBGRG00000000167 ENSBGRG00000023648 ENSBGRG00000023634 ENSBGRG00000023608 ENSBGRG00000023571 ENSBGRG00000023556 ENSBGRG00000023540 TSPEAR (ENSBGRG00000023436) #24 LRRC3 (ENSBGRG00000023411) TRPM2 (ENSBGRG00000023076) #25 CFAP410 (ENSBGRG00000023037) PFKL (ENSBGRG00000022853) ENSBGRG00000022818 American bison DUPLICATION American bison MODERN SPECIES 673 ENSBBBG00000017031 ##22 American bison MODERN SPECIES 2975 MCM3AP (ENSBBBG00000015748) LSS (ENSBBBG00000002644) SPATC1L (ENSBBBG00000015631) FTCD (ENSBBBG00000015621) COL6A2 (ENSBBBG00000015610) COL6A1 (ENSBBBG00000015494) PCBP3 (ENSBBBG00000015403) SLC19A1 (ENSBBBG00000001312) ENSBBBG00000001319 ENSBBBG00000001334 ENSBBBG00000001345 ADARB1 (ENSBBBG00000001357) SLX9 (ENSBBBG00000003802) ITGB2 (ENSBBBG00000003799) PTTG1IP (ENSBBBG00000015164) #21 ENSBBBG00000015161 ##22 UBE2G2 (ENSBBBG00000002782) #23 TSPEAR (ENSBBBG00000015153) #24 ENSBBBG00000008155 ENSBBBG00000015117 ENSBBBG00000015104 ENSBBBG00000003745 ENSBBBG00000015083 ENSBBBG00000015080 ENSBBBG00000015061 ENSBBBG00000015056 ENSBBBG00000015050 LRRC3 (ENSBBBG00000003736) TRPM2 (ENSBBBG00000015032) #25 CFAP410 (ENSBBBG00000000830) PFKL (ENSBBBG00000000844) Cetacea ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Odontoceti ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Sperm whale MODERN SPECIES 2 MAP4K5 (ENSPCTG00005012914) CDKL1 (ENSPCTG00005012442) DMAC2L (ENSPCTG00005011981) L2HGDH (ENSPCTG00005011546) SOS2 (ENSPCTG00005011239) VCPKMT (ENSPCTG00005010868) ENSPCTG00005010574 NEMF (ENSPCTG00005009974) KLHDC2 (ENSPCTG00005009495) KLHDC1 (ENSPCTG00005009005) POLE2 (ENSPCTG00005008659) DNAAF2 (ENSPCTG00005008238) MGAT2 (ENSPCTG00005008112) RPL36AL (ENSPCTG00005008036) LRR1 (ENSPCTG00005007870) ENSPCTG00005007750 ##22 RPS29 (ENSPCTG00005007460) ENSPCTG00005007124 MDGA2 (ENSPCTG00005006405) RPL10L (ENSPCTG00005006129) ENSPCTG00005006004 MIS18BP1 (ENSPCTG00005005248) FANCM (ENSPCTG00005002676) FKBP3 (ENSPCTG00005001685) PRPF39 (ENSPCTG00005014054) TOGARAM1 (ENSPCTG00005013510) KLHL28 (ENSPCTG00005013374) C11H14orf28 (ENSPCTG00005013271) ENSPCTG00005013201 ENSPCTG00005013146 ENSPCTG00005013112 Odontoceti_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Odontoceti_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Monodontidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Beluga whale MODERN SPECIES 111 DIP2A (ENSDLEG00000018787) YBEY (ENSDLEG00000020063) MCM3AP (ENSDLEG00000020070) LSS (ENSDLEG00000020129) SPATC1L (ENSDLEG00000020661) FTCD (ENSDLEG00000020687) ENSDLEG00000020776 ENSDLEG00000020780 SLC19A1 (ENSDLEG00000020790) COL18A1 (ENSDLEG00000020803) POFUT2 (ENSDLEG00000020860) ADARB1 (ENSDLEG00000020872) ENSDLEG00000020878 ITGB2 (ENSDLEG00000020885) PTTG1IP (ENSDLEG00000020895) #21 ENSDLEG00000020900 ##22 UBE2G2 (ENSDLEG00000020904) #23 TSPEAR (ENSDLEG00000020913) #24 LRRC3 (ENSDLEG00000020917) TRPM2 (ENSDLEG00000020923) #25 CUNH21orf2 (ENSDLEG00000020939) PFKL (ENSDLEG00000020945) AIRE (ENSDLEG00000020961) ENSDLEG00000020995 ICOSLG (ENSDLEG00000020998) GATD3 (ENSDLEG00000021000) PWP2 (ENSDLEG00000021005) TRAPPC10 (ENSDLEG00000021015) AGPAT3 (ENSDLEG00000021021) RRP1 (ENSDLEG00000021024) CSTB (ENSDLEG00000021029) Euarchontoglires ANCESTRAL SPECIES 4 ENSGT00940000157800 ENSGT00940000165228 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00950000182895.a.a.a.a.a.a.b.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 Primates ANCESTRAL SPECIES 3 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Strepsirrhini ANCESTRAL SPECIES 4 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Lemuriformes ANCESTRAL SPECIES 2 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Lemuriformes_a ANCESTRAL SPECIES 18 ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b.k ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000162951 ENSGT00940000158336 ENSGT00390000003582.e ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Coquerels sifaka MODERN SPECIES 892 ITGB4 (ENSPCOG00000025620) SAP30BP (ENSPCOG00000018378) SMIM5 (ENSPCOG00000005213) RECQL5 (ENSPCOG00000000050) ENSPCOG00000026940 LLGL2 (ENSPCOG00000020994) TSEN54 (ENSPCOG00000027880) CASKIN2 (ENSPCOG00000013857) TMEM94 (ENSPCOG00000023796) GRB2 (ENSPCOG00000020735) SLC25A19 (ENSPCOG00000028872) MIF4GD (ENSPCOG00000026945) MRPS7 (ENSPCOG00000014568) GGA3 (ENSPCOG00000028689) NUP85 (ENSPCOG00000005578) ENSPCOG00000022134 ##22 JPT1 (ENSPCOG00000023060) NT5C (ENSPCOG00000024576) ARMC7 (ENSPCOG00000019976) SLC16A5 (ENSPCOG00000019335) KCTD2 (ENSPCOG00000021087) ATP5PD (ENSPCOG00000014206) MRPL58 (ENSPCOG00000004300) CDR2L (ENSPCOG00000024572) HID1 (ENSPCOG00000014276) OTOP3 (ENSPCOG00000027823) OTOP2 (ENSPCOG00000017153) USH1G (ENSPCOG00000019505) FADS6 (ENSPCOG00000001565) FDXR (ENSPCOG00000022687) GRIN2C (ENSPCOG00000026141) Mouse lemur DUPLICATION Mouse lemur MODERN SPECIES 169 GEMIN8 (ENSMICG00000015984) ENSMICG00000043857 GLRA2 (ENSMICG00000015578) ENSMICG00000046220 FANCB (ENSMICG00000038518) MOSPD2 (ENSMICG00000004964) ASB9 (ENSMICG00000003161) ASB11 (ENSMICG00000003169) PIGA (ENSMICG00000003170) VEGFD (ENSMICG00000003176) PIR (ENSMICG00000003180) BMX (ENSMICG00000003184) ACE2 (ENSMICG00000003198) ENSMICG00000034241 CLTRN (ENSMICG00000003210) ENSMICG00000003502 ##22 CA5B (ENSMICG00000047453) ZRSR2 (ENSMICG00000003211) ENSMICG00000037538 GRPR (ENSMICG00000026422) ENSMICG00000012169 ENSMICG00000043954 CTPS2 (ENSMICG00000010839) S100G (ENSMICG00000034068) SYAP1 (ENSMICG00000000435) TXLNG (ENSMICG00000000438) RBBP7 (ENSMICG00000000440) REPS2 (ENSMICG00000003790) NHS (ENSMICG00000036975) ENSMICG00000027086 SCML2 (ENSMICG00000027531) Mouse lemur MODERN SPECIES 27 THY1 (ENSMICG00000045672) NECTIN1 (ENSMICG00000014993) TRIM29 (ENSMICG00000011088) OAF (ENSMICG00000011133) POU2F3 (ENSMICG00000011142) TLCD5 (ENSMICG00000011149) ARHGEF12 (ENSMICG00000011152) GRIK4 (ENSMICG00000011188) TBCEL (ENSMICG00000011213) SC5D (ENSMICG00000011243) SORL1 (ENSMICG00000011249) ENSMICG00000038669 ENSMICG00000046767 UBASH3B (ENSMICG00000004676) CRTAM (ENSMICG00000004685) ENSMICG00000033241 ##22 JHY (ENSMICG00000004695) BSX (ENSMICG00000004697) ENSMICG00000004702 CLMP (ENSMICG00000046908) ENSMICG00000029826 GRAMD1B (ENSMICG00000007638) SCN3B (ENSMICG00000032256) ZNF202 (ENSMICG00000007659) ENSMICG00000030155 TMEM225 (ENSMICG00000011007) ENSMICG00000046181 ENSMICG00000042956 OR8D2 (ENSMICG00000001098) ENSMICG00000009900 ENSMICG00000042736 Haplorrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Tarsier MODERN SPECIES 7047 SLC9A3 (ENSTSYG00000028108) EXOC3 (ENSTSYG00000000566) ENSTSYG00000031347 ENSTSYG00000034610 ##22 ENSTSYG00000026596 PDCD6 (ENSTSYG00000026254) SDHA (ENSTSYG00000010659) CCDC127 (ENSTSYG00000027393) LRRC14B (ENSTSYG00000032568) PLEKHG4B (ENSTSYG00000006038) Simiiformes ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Platyrrhini ANCESTRAL SPECIES 26 ENSGT00940000159556 ENSGT00530000063834.e.a ENSGT00950000183111.b.a ENSGT00950000182909.b.a.a.h ENSGT00950000182909.b.a.b ENSGT00390000000568 ENSGT00940000158138 ENSGT00940000153229.A.a.b ENSGT01030000234624.b.a.a ENSGT01030000234624.b.a.b.a.a ENSGT01030000234624.b.a.b.b ENSGT01030000234624.b.a.b.a.b ENSGT01030000234624.a.b ENSGT01030000234624.a.a.a ENSGT01030000234624.a.a.b ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00940000154875.l ENSGT00940000155981 ENSGT00940000154281.m.b.a.b.b ENSGT00940000160563 ENSGT00940000156037.a ENSGT00940000156453.a.d ENSGT00390000011620.a.a.a.c ENSGT00940000160354 ENSGT00940000156352 ENSGT00940000159287 ENSGT00940000162118 ENSGT00390000017571 ENSGT00940000155295 ENSGT00390000000444 ENSGT00950000182917.b Mas night monkey MODERN SPECIES 426 SIGLEC15 (ENSANAG00000020739) EPG5 (ENSANAG00000028542) PSTPIP2 (ENSANAG00000033626) ENSANAG00000026020 ENSANAG00000036960 ATP5F1A (ENSANAG00000020684) ENSANAG00000034812 C18orf25 (ENSANAG00000015359) RNF165 (ENSANAG00000032671) LOXHD1 (ENSANAG00000026289) ST8SIA5 (ENSANAG00000020554) PIAS2 (ENSANAG00000036127) ENSANAG00000027601 KATNAL2 (ENSANAG00000030359) HDHD2 (ENSANAG00000036024) ENSANAG00000023759 ##22 IER3IP1 (ENSANAG00000023921) SKOR2 (ENSANAG00000030804) ENSANAG00000030706 SMAD2 (ENSANAG00000031458) ZBTB7C (ENSANAG00000033116) CTIF (ENSANAG00000024925) SMAD7 (ENSANAG00000028079) DYM (ENSANAG00000029190) ENSANAG00000032933 ENSANAG00000038237 LIPG (ENSANAG00000020805) ACAA2 (ENSANAG00000033683) MYO5B (ENSANAG00000027712) CFAP53 (ENSANAG00000038121) MBD1 (ENSANAG00000036253) Cebidae ANCESTRAL SPECIES 28 ENSGT00940000159556 ENSGT00530000063834.e.a ENSGT00950000183111.b.a ENSGT00950000182909.b.a.a.g ENSGT00950000182909.b.a.b ENSGT00390000000568 ENSGT00940000158138 ENSGT00940000153229.A.a.b ENSGT01030000234624.b.a.a ENSGT01030000234624.b.a.b.a.a ENSGT01030000234624.b.a.b.b ENSGT01030000234624.b.a.b.a.b ENSGT01030000234624.a.b ENSGT01030000234624.a.a.a ENSGT01030000234624.a.a.b ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00940000154875.l ENSGT00940000155981 ENSGT00940000160563 ENSGT00940000156037.a ENSGT00940000156453.a.d ENSGT00390000011620.a.a.a.c ENSGT00940000160354 ENSGT00940000156352 ENSGT00940000159287 ENSGT00940000162118 ENSGT00390000017571 ENSGT00940000155295 ENSGT00390000000444 ENSGT00950000182917.b ENSGT01000000215939 Marmoset MODERN SPECIES FGD3 (ENSCJAG00000020520) ENSCJAG00000000423 ENSCJAG00000069734 ZNF782 (ENSCJAG00000005372) ENSCJAG00000055940 ENSCJAG00000080940 HSD17B3 (ENSCJAG00000008899) ENSCJAG00000055424 ERCC6L2 (ENSCJAG00000043554) PTCH1 (ENSCJAG00000021318) FANCC (ENSCJAG00000021324) AOPEP (ENSCJAG00000021327) FBP1 (ENSCJAG00000041493) FBP2 (ENSCJAG00000021334) ENSCJAG00000075286 ENSCJAG00000076862 ##22 ENSCJAG00000067353 CTSV (ENSCJAG00000046004) ENSCJAG00000064535 ENSCJAG00000047796 SLC35D2 (ENSCJAG00000012556) ENSCJAG00000040778 HABP4 (ENSCJAG00000012589) ENSCJAG00000012598 ENSCJAG00000061833 PRXL2C (ENSCJAG00000076685) ZNF484 (ENSCJAG00000005536) ENSCJAG00000084670 GAS1 (ENSCJAG00000062210) ENSCJAG00000074564 DAPK1 (ENSCJAG00000005569) Cebidae_a ANCESTRAL SPECIES 29 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b.s ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00940000158193 #23 ENSGT00940000158579.l.b.b.a.a.b ENSGT00940000158579.l.b.b.b ENSGT00940000158579.l.b.b.a.a.a ENSGT00510000047718 #24 ENSGT00940000158579.l.b.b.a.b ENSGT00940000163845.c ENSGT00940000163258.i.b ENSGT00940000158579.l.a ENSGT00940000158579.k ENSGT00940000156404 #25 ENSGT00390000018807 ENSGT00940000159292 ENSGT00940000161104 ENSGT00940000162228 Capuchin DUPLICATION Capuchin MODERN SPECIES 534 ENSCCAG00000019627 PLS3 (ENSCCAG00000025264) ENSCCAG00000026741 LRCH2 (ENSCCAG00000027902) IL13RA2 (ENSCCAG00000026227) HTR2C (ENSCCAG00000033885) ENSCCAG00000024001 ##22 Capuchin MODERN SPECIES 269 ENSCCAG00000035740 ENSCCAG00000027832 ##22 RASEF (ENSCCAG00000031624) ENSCCAG00000028546 ENSCCAG00000027734 TLE1 (ENSCCAG00000030133) Capuchin DUPLICATION Capuchin MODERN SPECIES 93 ITGB4 (ENSCCAG00000020437) GALK1 (ENSCCAG00000032984) SAP30BP (ENSCCAG00000022487) SMIM5 (ENSCCAG00000021103) RECQL5 (ENSCCAG00000031546) ENSCCAG00000033438 LLGL2 (ENSCCAG00000023729) TSEN54 (ENSCCAG00000036624) CASKIN2 (ENSCCAG00000027765) TMEM94 (ENSCCAG00000033322) GRB2 (ENSCCAG00000031864) SLC25A19 (ENSCCAG00000020105) ENSCCAG00000025391 GGA3 (ENSCCAG00000027478) NUP85 (ENSCCAG00000030795) ENSCCAG00000030945 ##22 ENSCCAG00000036238 NT5C (ENSCCAG00000030649) ARMC7 (ENSCCAG00000029487) SLC16A5 (ENSCCAG00000025587) ENSCCAG00000035201 KCTD2 (ENSCCAG00000020324) ENSCCAG00000027800 MRPL58 (ENSCCAG00000035029) CDR2L (ENSCCAG00000017202) HID1 (ENSCCAG00000025392) OTOP3 (ENSCCAG00000027653) OTOP2 (ENSCCAG00000013860) USH1G (ENSCCAG00000029990) FADS6 (ENSCCAG00000035913) FDXR (ENSCCAG00000031085) Capuchin MODERN SPECIES 112 YBEY (ENSCCAG00000035845) MCM3AP (ENSCCAG00000032869) LSS (ENSCCAG00000022848) SPATC1L (ENSCCAG00000030470) FTCD (ENSCCAG00000009041) COL6A2 (ENSCCAG00000027356) COL6A1 (ENSCCAG00000028601) PCBP3 (ENSCCAG00000024561) SLC19A1 (ENSCCAG00000026323) COL18A1 (ENSCCAG00000036606) POFUT2 (ENSCCAG00000020926) ADARB1 (ENSCCAG00000029934) SLX9 (ENSCCAG00000036236) ITGB2 (ENSCCAG00000001137) PTTG1IP (ENSCCAG00000030590) #21 ENSCCAG00000024614 ##22 UBE2G2 (ENSCCAG00000035488) #23 TSPEAR (ENSCCAG00000034859) #24 ENSCCAG00000013274 KRTAP10-12 (ENSCCAG00000021834) KRTAP10-9 (ENSCCAG00000027895) ENSCCAG00000021982 ENSCCAG00000035894 KRTAP10-8 (ENSCCAG00000035912) ENSCCAG00000019747 ENSCCAG00000024183 ENSCCAG00000032996 ENSCCAG00000027045 ENSCCAG00000012157 ENSCCAG00000031995 ENSCCAG00000022693 Capuchin MODERN SPECIES 12 TRAPPC8 (ENSCCAG00000034187) B4GALT6 (ENSCCAG00000029865) TTR (ENSCCAG00000029921) DSG2 (ENSCCAG00000027262) DSG3 (ENSCCAG00000020345) DSG4 (ENSCCAG00000022744) DSG1 (ENSCCAG00000035455) DSC1 (ENSCCAG00000016167) DSC2 (ENSCCAG00000034283) DSC3 (ENSCCAG00000037410) ENSCCAG00000031616 ##22 ENSCCAG00000028020 ENSCCAG00000021923 ENSCCAG00000037382 ENSCCAG00000035350 CDH2 (ENSCCAG00000021037) CHST9 (ENSCCAG00000020066) ENSCCAG00000018909 AQP4 (ENSCCAG00000021505) ENSCCAG00000018132 KCTD1 (ENSCCAG00000033186) ENSCCAG00000005936 ENSCCAG00000037563 TAF4B (ENSCCAG00000033480) PSMA8 (ENSCCAG00000035292) SS18 (ENSCCAG00000021245) Catarrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Cercopithecidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Rhinopithecus ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Black snub-nosed monkey MODERN SPECIES 768 SAP30BP (ENSRBIG00000044227) SMIM6 (ENSRBIG00000017485) SMIM5 (ENSRBIG00000029445) RECQL5 (ENSRBIG00000008500) MYO15B (ENSRBIG00000039818) LLGL2 (ENSRBIG00000027549) TSEN54 (ENSRBIG00000043040) CASKIN2 (ENSRBIG00000042182) TMEM94 (ENSRBIG00000035664) GRB2 (ENSRBIG00000032249) ENSRBIG00000033257 MIF4GD (ENSRBIG00000027917) MRPS7 (ENSRBIG00000030896) GGA3 (ENSRBIG00000031580) NUP85 (ENSRBIG00000006462) ENSRBIG00000033752 ##22 ENSRBIG00000005629 NT5C (ENSRBIG00000043512) SLC16A5 (ENSRBIG00000008707) ENSRBIG00000034486 KCTD2 (ENSRBIG00000042437) ATP5PD (ENSRBIG00000027826) MRPL58 (ENSRBIG00000033109) CDR2L (ENSRBIG00000027442) HID1 (ENSRBIG00000038520) OTOP3 (ENSRBIG00000042004) OTOP2 (ENSRBIG00000038053) USH1G (ENSRBIG00000028411) FDXR (ENSRBIG00000011648) GRIN2C (ENSRBIG00000032178) TMEM104 (ENSRBIG00000036798) Cercopithecinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Cercopithecinae_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Macaca ANCESTRAL SPECIES 4 ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000164037 ENSGT00510000055459 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000159666 ENSGT00940000158336.y ENSGT00390000003582.e.c.c.a.b ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Macaca_a ANCESTRAL SPECIES 4 ENSGT00950000183187.B ENSGT01100000263555.b ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000157333 ENSGT00390000014620 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00390000011596.b ENSGT00940000162633 ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000158336.y ENSGT00390000003582.e.c.c.a.b ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00390000013574 ENSGT00940000156964.C ENSGT00390000001244 Rhesus MODERN SPECIES 7 SAP30BP (ENSMMUG00000021636) SMIM5 (ENSMMUG00000063604) RECQL5 (ENSMMUG00000021635) ENSMMUG00000064684 ENSMMUG00000013436 LLGL2 (ENSMMUG00000001228) TSEN54 (ENSMMUG00000022123) CASKIN2 (ENSMMUG00000022121) TMEM94 (ENSMMUG00000022120) ENSMMUG00000058142 GRB2 (ENSMMUG00000004756) SLC25A19 (ENSMMUG00000018031) MRPS7 (ENSMMUG00000063156) GGA3 (ENSMMUG00000018021) NUP85 (ENSMMUG00000018018) JPT1 (ENSMMUG00000046429) ##22 NT5C (ENSMMUG00000029832) ARMC7 (ENSMMUG00000029833) ENSMMUG00000051312 SLC16A5 (ENSMMUG00000041001) KCTD2 (ENSMMUG00000011648) ATP5PD (ENSMMUG00000011647) ENSMMUG00000011644 CDR2L (ENSMMUG00000063153) HID1 (ENSMMUG00000023406) OTOP3 (ENSMMUG00000023405) OTOP2 (ENSMMUG00000053983) USH1G (ENSMMUG00000054593) FDXR (ENSMMUG00000015648) GRIN2C (ENSMMUG00000005744) TMEM104 (ENSMMUG00000005739) Crab-eating macaque MODERN SPECIES 7 SAP30BP (ENSMFAG00000000434) SMIM5 (ENSMFAG00000034483) RECQL5 (ENSMFAG00000044550) ENSMFAG00000039726 LLGL2 (ENSMFAG00000001433) TSEN54 (ENSMFAG00000000712) CASKIN2 (ENSMFAG00000037054) TMEM94 (ENSMFAG00000003142) ENSMFAG00000059418 ENSMFAG00000048713 GRB2 (ENSMFAG00000000037) SLC25A19 (ENSMFAG00000030383) MRPS7 (ENSMFAG00000042971) GGA3 (ENSMFAG00000000928) NUP85 (ENSMFAG00000041786) ENSMFAG00000035607 ##22 NT5C (ENSMFAG00000030011) ENSMFAG00000033876 SLC16A5 (ENSMFAG00000000622) KCTD2 (ENSMFAG00000040581) ENSMFAG00000033691 ENSMFAG00000023313 CDR2L (ENSMFAG00000041166) HID1 (ENSMFAG00000032179) OTOP3 (ENSMFAG00000003251) OTOP2 (ENSMFAG00000045008) USH1G (ENSMFAG00000033616) FDXR (ENSMFAG00000045117) GRIN2C (ENSMFAG00000045163) TMEM104 (ENSMFAG00000043806) NAT9 (ENSMFAG00000044362) Pig-tailed macaque DUPLICATION Pig-tailed macaque MODERN SPECIES 587 RPL7 (ENSMNEG00000038792) C8orf89 (ENSMNEG00000029412) ENSMNEG00000034240 SBSPON (ENSMNEG00000041568) TERF1 (ENSMNEG00000034508) KCNB2 (ENSMNEG00000040964) TRPA1 (ENSMNEG00000044007) MSC (ENSMNEG00000027061) EYA1 (ENSMNEG00000018219) XKR9 (ENSMNEG00000026803) LACTB2 (ENSMNEG00000043741) TRAM1 (ENSMNEG00000035823) ENSMNEG00000028731 NCOA2 (ENSMNEG00000034881) PRDM14 (ENSMNEG00000037314) ENSMNEG00000034587 ##22 ENSMNEG00000038709 ENSMNEG00000042647 SLCO5A1 (ENSMNEG00000033659) SULF1 (ENSMNEG00000036446) Pig-tailed macaque MODERN SPECIES 503 YBEY (ENSMNEG00000039114) MCM3AP (ENSMNEG00000029780) LSS (ENSMNEG00000044250) SPATC1L (ENSMNEG00000028822) FTCD (ENSMNEG00000045053) COL6A2 (ENSMNEG00000035628) COL6A1 (ENSMNEG00000043587) PCBP3 (ENSMNEG00000035551) SLC19A1 (ENSMNEG00000029970) COL18A1 (ENSMNEG00000032048) POFUT2 (ENSMNEG00000041753) ADARB1 (ENSMNEG00000031543) SLX9 (ENSMNEG00000044629) ITGB2 (ENSMNEG00000031016) PTTG1IP (ENSMNEG00000030046) #21 ENSMNEG00000045199 ##22 UBE2G2 (ENSMNEG00000028583) #23 TSPEAR (ENSMNEG00000045469) #24 ENSMNEG00000028794 ENSMNEG00000009948 ENSMNEG00000043238 KRTAP10-9 (ENSMNEG00000036736) KRTAP10-10 (ENSMNEG00000043599) KRTAP10-8 (ENSMNEG00000038464) KRTAP10-7 (ENSMNEG00000016816) ENSMNEG00000037098 ENSMNEG00000036953 ENSMNEG00000030729 ENSMNEG00000033060 ENSMNEG00000040527 LRRC3 (ENSMNEG00000021603) Cercopithecinae_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Olive baboon DUPLICATION Olive baboon MODERN SPECIES 14 YBEY (ENSPANG00000024224) MCM3AP (ENSPANG00000024225) LSS (ENSPANG00000019152) SPATC1L (ENSPANG00000017098) FTCD (ENSPANG00000008270) COL6A2 (ENSPANG00000024175) ENSPANG00000048117 ENSPANG00000022692 PCBP3 (ENSPANG00000023631) SLC19A1 (ENSPANG00000017097) POFUT2 (ENSPANG00000023630) ADARB1 (ENSPANG00000020871) SLX9 (ENSPANG00000021083) ITGB2 (ENSPANG00000023629) PTTG1IP (ENSPANG00000005642) #21 ENSPANG00000031359 ##22 UBE2G2 (ENSPANG00000032157) #23 ENSPANG00000040535 ENSPANG00000042415 ENSPANG00000048933 ENSPANG00000047848 KRTAP10-8 (ENSPANG00000045294) KRTAP10-4 (ENSPANG00000006270) ENSPANG00000049222 ENSPANG00000049989 ENSPANG00000041020 TSPEAR (ENSPANG00000006409) #24 LRRC3 (ENSPANG00000001292) TRPM2 (ENSPANG00000009403) #25 CFAP410 (ENSPANG00000008157) PFKL (ENSPANG00000009402) Olive baboon MODERN SPECIES 421 ENSPANG00000020191 ##22 Cercopithecinae_d ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Sooty mangabey DUPLICATION Sooty mangabey MODERN SPECIES 597 SH3PXD2B (ENSCATG00000043516) NEURL1B (ENSCATG00000038257) DUSP1 (ENSCATG00000027456) ERGIC1 (ENSCATG00000041026) RPL26L1 (ENSCATG00000029601) ATP6V0E1 (ENSCATG00000036579) CREBRF (ENSCATG00000040516) BNIP1 (ENSCATG00000043162) NKX2-5 (ENSCATG00000031410) STC2 (ENSCATG00000030924) ENSCATG00000005639 CPEB4 (ENSCATG00000014550) C5orf47 (ENSCATG00000012564) NSG2 (ENSCATG00000029990) ENSCATG00000011643 ENSCATG00000040643 ##22 ENSCATG00000040728 MSX2 (ENSCATG00000022593) ENSCATG00000009773 DRD1 (ENSCATG00000006084) SFXN1 (ENSCATG00000030378) HRH2 (ENSCATG00000045358) CPLX2 (ENSCATG00000044259) THOC3 (ENSCATG00000029038) ENSCATG00000010623 ENSCATG00000042378 SIMC1 (ENSCATG00000038199) ENSCATG00000039161 ARL10 (ENSCATG00000012151) ENSCATG00000035739 HIGD2A (ENSCATG00000025158) Sooty mangabey MODERN SPECIES 444 ENSCATG00000020353 ENSCATG00000042513 ENSCATG00000040456 SLITRK1 (ENSCATG00000019541) ENSCATG00000037856 ##22 SLITRK6 (ENSCATG00000016872) ENSCATG00000009414 ENSCATG00000016144 SLITRK5 (ENSCATG00000016689) GPC5 (ENSCATG00000035480) ENSCATG00000028732 GPC6 (ENSCATG00000033812) DCT (ENSCATG00000015377) TGDS (ENSCATG00000033793) GPR180 (ENSCATG00000043062) ENSCATG00000009550 SOX21 (ENSCATG00000007563) ABCC4 (ENSCATG00000040794) CLDN10 (ENSCATG00000016865) DZIP1 (ENSCATG00000038545) Sooty mangabey MODERN SPECIES 465 YBEY (ENSCATG00000035660) MCM3AP (ENSCATG00000039155) LSS (ENSCATG00000038397) SPATC1L (ENSCATG00000037303) FTCD (ENSCATG00000041690) COL6A2 (ENSCATG00000041547) COL6A1 (ENSCATG00000040431) PCBP3 (ENSCATG00000038419) SLC19A1 (ENSCATG00000036905) COL18A1 (ENSCATG00000038222) POFUT2 (ENSCATG00000034952) ADARB1 (ENSCATG00000029876) SLX9 (ENSCATG00000019293) ITGB2 (ENSCATG00000039608) PTTG1IP (ENSCATG00000033867) #21 ENSCATG00000041498 ##22 UBE2G2 (ENSCATG00000012779) #23 ENSCATG00000044136 ENSCATG00000042131 ENSCATG00000040752 ENSCATG00000013543 KRTAP10-8 (ENSCATG00000040413) KRTAP10-7 (ENSCATG00000040066) ENSCATG00000041123 ENSCATG00000036226 ENSCATG00000041080 ENSCATG00000041458 TSPEAR (ENSCATG00000034984) #24 LRRC3 (ENSCATG00000017064) TRPM2 (ENSCATG00000034197) #25 CFAP410 (ENSCATG00000040484) Hominoidea ANCESTRAL SPECIES 26 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b.s ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT00390000018577 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.b.j.b #22 ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00940000158193 #23 ENSGT00940000158579.l.a ENSGT00940000163258.i.a.a ENSGT00940000163527.c.a ENSGT00940000163527.d ENSGT00960000187213 ENSGT00940000165026 ENSGT00940000164049.b.a ENSGT00940000163258.i.b ENSGT00940000158579.l.b.a ENSGT00940000163845.d ENSGT00940000158579.l.b.b.a ENSGT00940000163845.c ENSGT00940000163258.i.a.b ENSGT00940000158579.l.b.b.b Hominidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Homo/Pan/Gorilla group ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Gorilla MODERN SPECIES 12 MCM3AP (ENSGGOG00000015716) LSS (ENSGGOG00000015701) SPATC1L (ENSGGOG00000012943) FTCD (ENSGGOG00000002869) COL6A2 (ENSGGOG00000003661) COL6A1 (ENSGGOG00000001462) PCBP3 (ENSGGOG00000003683) SLC19A1 (ENSGGOG00000011734) ENSGGOG00000011704 POFUT2 (ENSGGOG00000015065) ADARB1 (ENSGGOG00000013244) ENSGGOG00000014482 ENSGGOG00000014477 ITGB2 (ENSGGOG00000014457) PTTG1IP (ENSGGOG00000002077) #21 ENSGGOG00000022636 ##22 UBE2G2 (ENSGGOG00000038153) #23 KRTAP10-12 (ENSGGOG00000012454) ENSGGOG00000036857 ENSGGOG00000038357 KRTAP10-8 (ENSGGOG00000007320) ENSGGOG00000038975 KRTAP10-5 (ENSGGOG00000010557) KRTAP10-7 (ENSGGOG00000044027) ENSGGOG00000040198 ENSGGOG00000039833 TSPEAR (ENSGGOG00000002047) #24 LRRC3 (ENSGGOG00000008435) TRPM2 (ENSGGOG00000008410) #25 ENSGGOG00000005702 PFKL (ENSGGOG00000005687) Homo/Pan group ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Pan ANCESTRAL SPECIES 27 ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b.s ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709.e.a.a ENSGT00390000018577 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00940000158193 #23 ENSGT00940000163258.i.a.a ENSGT00940000163527.c.a ENSGT00940000163527.d ENSGT00940000165026.b ENSGT00940000164049.b.a ENSGT00940000163258.i.b ENSGT00940000158579.l.b.a.c ENSGT00940000163845.d ENSGT00940000158579.l.b.b.a.c ENSGT00940000163845.c ENSGT00940000158579.l.a ENSGT00510000047718 #24 ENSGT00940000154360.A.b ENSGT00940000156404 #25 Chimpanzee MODERN SPECIES 12 MCM3AP (ENSPTRG00000014019) LSS (ENSPTRG00000014017) SPATC1L (ENSPTRG00000014016) ENSPTRG00000047921 ENSPTRG00000049395 COL6A2 (ENSPTRG00000014014) PCBP3 (ENSPTRG00000014010) SLC19A1 (ENSPTRG00000031409) COL18A1 (ENSPTRG00000014005) POFUT2 (ENSPTRG00000014001) ADARB1 (ENSPTRG00000013997) SLX9 (ENSPTRG00000013995) ENSPTRG00000013994 ITGB2 (ENSPTRG00000013993) PTTG1IP (ENSPTRG00000013992) #21 ENSPTRG00000052033 ##22 UBE2G2 (ENSPTRG00000013990) #23 ENSPTRG00000040577 ENSPTRG00000023178 KRTAP12-1 (ENSPTRG00000031411) KRTAP12-3 (ENSPTRG00000013986) KRTAP10-11 (ENSPTRG00000039751) ENSPTRG00000047089 ENSPTRG00000050735 KRTAP10-8 (ENSPTRG00000051377) ENSPTRG00000023728 ENSPTRG00000013983 KRTAP10-5 (ENSPTRG00000031415) ENSPTRG00000046656 KRTAP10-2 (ENSPTRG00000013982) TSPEAR (ENSPTRG00000013980) #24 Bonobo DUPLICATION Bonobo MODERN SPECIES 16 ENSPPAG00000027782 CCDC66 (ENSPPAG00000008779) TASOR (ENSPPAG00000036318) ARHGEF3 (ENSPPAG00000038344) SPATA12 (ENSPPAG00000015691) IL17RD (ENSPPAG00000012861) ENSPPAG00000023824 HESX1 (ENSPPAG00000027736) APPL1 (ENSPPAG00000037799) ASB14 (ENSPPAG00000040684) DNAH12 (ENSPPAG00000033592) PDE12 (ENSPPAG00000034712) ARF4 (ENSPPAG00000036638) DENND6A (ENSPPAG00000032750) SLMAP (ENSPPAG00000038504) ENSPPAG00000027261 ##22 FLNB (ENSPPAG00000030465) DNASE1L3 (ENSPPAG00000042704) ABHD6 (ENSPPAG00000039614) RPP14 (ENSPPAG00000041153) HTD2 (ENSPPAG00000036591) PXK (ENSPPAG00000027245) PDHB (ENSPPAG00000028933) KCTD6 (ENSPPAG00000031362) ACOX2 (ENSPPAG00000029182) FAM107A (ENSPPAG00000043565) FAM3D (ENSPPAG00000033729) CFAP20DC (ENSPPAG00000037900) ENSPPAG00000004830 ENSPPAG00000037040 ENSPPAG00000034829 Bonobo MODERN SPECIES 12 MCM3AP (ENSPPAG00000025048) LSS (ENSPPAG00000035048) SPATC1L (ENSPPAG00000034632) FTCD (ENSPPAG00000032812) COL6A2 (ENSPPAG00000029776) COL6A1 (ENSPPAG00000027819) PCBP3 (ENSPPAG00000021940) SLC19A1 (ENSPPAG00000027716) ENSPPAG00000014049 POFUT2 (ENSPPAG00000035189) ADARB1 (ENSPPAG00000027139) ENSPPAG00000034875 ENSPPAG00000034706 ITGB2 (ENSPPAG00000033785) PTTG1IP (ENSPPAG00000032064) #21 ENSPPAG00000031634 ##22 UBE2G2 (ENSPPAG00000031274) #23 ENSPPAG00000030769 KRTAP12-1 (ENSPPAG00000030724) KRTAP12-3 (ENSPPAG00000032261) KRTAP10-11 (ENSPPAG00000032384) KRTAP10-9 (ENSPPAG00000030369) ENSPPAG00000030230 ENSPPAG00000029990 ENSPPAG00000029414 TSPEAR (ENSPPAG00000027981) #24 LRRC3 (ENSPPAG00000006087) TRPM2 (ENSPPAG00000036474) #25 ENSPPAG00000033399 PFKL (ENSPPAG00000028154) AIRE (ENSPPAG00000018145) Gibbon DUPLICATION Gibbon DUPLICATION Gibbon MODERN SPECIES 11 UBTD2 (ENSNLEG00000000381) SH3PXD2B (ENSNLEG00000000384) ENSNLEG00000000392 DUSP1 (ENSNLEG00000035887) ENSNLEG00000033458 ERGIC1 (ENSNLEG00000000407) ENSNLEG00000030031 ENSNLEG00000000442 BNIP1 (ENSNLEG00000000453) NKX2-5 (ENSNLEG00000000457) STC2 (ENSNLEG00000000463) BOD1 (ENSNLEG00000000476) CPEB4 (ENSNLEG00000000487) C5orf47 (ENSNLEG00000027778) NSG2 (ENSNLEG00000000522) ENSNLEG00000033959 ##22 MSX2 (ENSNLEG00000000548) ENSNLEG00000030116 DRD1 (ENSNLEG00000032546) SFXN1 (ENSNLEG00000000555) HRH2 (ENSNLEG00000000579) CPLX2 (ENSNLEG00000000585) THOC3 (ENSNLEG00000000593) SIMC1 (ENSNLEG00000012464) KIAA1191 (ENSNLEG00000030905) ENSNLEG00000012489 ENSNLEG00000012490 HIGD2A (ENSNLEG00000012501) CLTB (ENSNLEG00000012503) FAF2 (ENSNLEG00000012504) RNF44 (ENSNLEG00000012516) Gibbon MODERN SPECIES 7 ENSNLEG00000026926 ENSNLEG00000029677 ENSNLEG00000033578 TBX20 (ENSNLEG00000001606) DPY19L2 (ENSNLEG00000015504) DPY19L1 (ENSNLEG00000015491) NPSR1 (ENSNLEG00000015478) BMPER (ENSNLEG00000015455) ENSNLEG00000032278 BBS9 (ENSNLEG00000015425) ENSNLEG00000028717 RP9 (ENSNLEG00000015421) ENSNLEG00000035208 NT5C3A (ENSNLEG00000015415) FKBP9 (ENSNLEG00000015401) ENSNLEG00000035994 ##22 KBTBD2 (ENSNLEG00000012407) AVL9 (ENSNLEG00000015273) LSM5 (ENSNLEG00000015268) ENSNLEG00000033028 PDE1C (ENSNLEG00000015246) ITPRID1 (ENSNLEG00000015233) NEUROD6 (ENSNLEG00000015231) ADCYAP1R1 (ENSNLEG00000030573) GHRHR (ENSNLEG00000015214) AQP1 (ENSNLEG00000035862) MINDY4 (ENSNLEG00000015188) INMT (ENSNLEG00000015185) CRHR2 (ENSNLEG00000015171) GARS1 (ENSNLEG00000015152) GGCT (ENSNLEG00000015148) Gibbon MODERN SPECIES 17 ENSNLEG00000031884 MCM3AP (ENSNLEG00000002880) LSS (ENSNLEG00000002728) SPATC1L (ENSNLEG00000002707) ENSNLEG00000002699 COL6A2 (ENSNLEG00000002670) ENSNLEG00000002651 PCBP3 (ENSNLEG00000002639) ENSNLEG00000002591 ENSNLEG00000002577 ADARB1 (ENSNLEG00000002514) SLX9 (ENSNLEG00000002488) ENSNLEG00000002454 ITGB2 (ENSNLEG00000002418) PTTG1IP (ENSNLEG00000002398) #21 ENSNLEG00000030138 ##22 UBE2G2 (ENSNLEG00000002335) #23 ENSNLEG00000032236 ENSNLEG00000031883 KRTAP12-1 (ENSNLEG00000002334) ENSNLEG00000035625 ENSNLEG00000002313 ENSNLEG00000032715 KRTAP10-5 (ENSNLEG00000026989) ENSNLEG00000027551 KRTAP10-3 (ENSNLEG00000026713) KRTAP10-2 (ENSNLEG00000027209) TSPEAR (ENSNLEG00000002263) #24 ENSNLEG00000002224 #25 ENSNLEG00000002219 PFKL (ENSNLEG00000002171) Euarchontoglires_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Glires ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Lagomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Rabbit MODERN SPECIES 18 ENSOCUG00000024602 CMKLR2 (ENSOCUG00000012384) NDUFS1 (ENSOCUG00000012368) ENSOCUG00000009848 INO80D (ENSOCUG00000014786) NRP2 (ENSOCUG00000007978) PARD3B (ENSOCUG00000007959) ICOS (ENSOCUG00000001858) CTLA4 (ENSOCUG00000017274) ENSOCUG00000030918 CD28 (ENSOCUG00000016134) ENSOCUG00000016722 ENSOCUG00000008062 CYP20A1 (ENSOCUG00000008054) NBEAL1 (ENSOCUG00000008716) ENSOCUG00000027134 ##22 CARF (ENSOCUG00000005335) WDR12 (ENSOCUG00000002961) ENSOCUG00000010497 ENSOCUG00000030693 ENSOCUG00000006347 BMPR2 (ENSOCUG00000001971) NOP58 (ENSOCUG00000003631) ENSOCUG00000037823 KIAA2012 (ENSOCUG00000003626) ENSOCUG00000016611 FZD7 (ENSOCUG00000011457) CDK15 (ENSOCUG00000007737) ALS2 (ENSOCUG00000012488) MPP4 (ENSOCUG00000012470) TMEM237 (ENSOCUG00000012462) Rodentia ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Rodentia_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Myomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Muroidea ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Upper Galilee mountains blind mole rat MODERN SPECIES 231 ENSNGAG00000016709 ##22 Muroidea_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Cricetidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Cricetinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Chinese hamster chok1gshd MODERN SPECIES 112 Brd7 (ENSCGRG00001003449) Nkd1 (ENSCGRG00001011787) Snx20 (ENSCGRG00001020312) Nod2 (ENSCGRG00001011531) Cyld (ENSCGRG00001000533) ENSCGRG00001019423 ENSCGRG00001023314 Tox3 (ENSCGRG00001021816) ENSCGRG00001001946 ENSCGRG00001010471 Gm19935 (ENSCGRG00001012263) ENSCGRG00001012667 Chd9 (ENSCGRG00001016150) Rbl2 (ENSCGRG00001012793) ENSCGRG00001024361 ENSCGRG00001013457 ##22 Rpgrip1l (ENSCGRG00001020196) Fto (ENSCGRG00001013545) Irx3 (ENSCGRG00001022254) Irx5 (ENSCGRG00001019317) ENSCGRG00001021640 Irx6 (ENSCGRG00001005135) Mmp2 (ENSCGRG00001020567) Lpcat2 (ENSCGRG00001018067) Slc6a2 (ENSCGRG00001015472) Ces1a (ENSCGRG00001017007) ENSCGRG00001013949 ENSCGRG00001017957 Ces1d (ENSCGRG00001025029) Ces1e (ENSCGRG00001019039) ENSCGRG00001020924 Cricetidae_B ANCESTRAL SPECIES 15 ENSGT00940000159556 ENSGT00530000063834.e.a ENSGT00950000183111.b.a ENSGT00950000182909.b.a.a.f ENSGT00950000182909.b.a.b ENSGT00390000000568 ENSGT00940000158138 ENSGT00940000153229.A.a.b ENSGT01030000234624.b.a.a ENSGT01030000234624.b.a.b.a.a ENSGT01030000234624.b.a.b.b ENSGT01030000234624.b.a.b.a.b ENSGT01030000234624.a.b ENSGT01030000234624.a.a.a ENSGT01030000234624.a.a.b ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00940000155981 ENSGT00940000160563 ENSGT00940000156037.a ENSGT00940000156453.a ENSGT00390000011620.a.a.a ENSGT00940000160354 ENSGT00940000156352 ENSGT00940000159287 ENSGT00940000162118 ENSGT00390000017571 ENSGT00940000155295 ENSGT00390000000444 ENSGT00950000182917.b ENSGT00940000155638 ENSGT00940000153902.a Northern American deer mouse DUPLICATION Northern American deer mouse MODERN SPECIES 10 Mep1b (ENSPEMG00000014222) ENSPEMG00000030520 Rnf138 (ENSPEMG00000015941) Rnf125 (ENSPEMG00000011406) ENSPEMG00000026384 Trappc8 (ENSPEMG00000010916) B4galt6 (ENSPEMG00000011754) Ttr (ENSPEMG00000024235) Dsg2 (ENSPEMG00000011444) ENSPEMG00000023683 Dsg4 (ENSPEMG00000016266) ENSPEMG00000009841 Dsc1 (ENSPEMG00000023922) ENSPEMG00000026147 Dsc3 (ENSPEMG00000023539) ENSPEMG00000030174 ##22 Cdh2 (ENSPEMG00000018458) Chst9 (ENSPEMG00000006948) Aqp4 (ENSPEMG00000029003) ENSPEMG00000018321 Taf4b (ENSPEMG00000019174) Psma8 (ENSPEMG00000008949) Ss18 (ENSPEMG00000014583) Zfp521 (ENSPEMG00000001995) Hrh4 (ENSPEMG00000014230) Impact (ENSPEMG00000029969) Osbpl1a (ENSPEMG00000014841) ENSPEMG00000025747 Ttc39c (ENSPEMG00000007592) ENSPEMG00000016767 ENSPEMG00000030013 Northern American deer mouse MODERN SPECIES 22 Gm11100 (ENSPEMG00000031200) Thoc7 (ENSPEMG00000000620) Atxn7 (ENSPEMG00000003214) Psmd6 (ENSPEMG00000007867) Or2t6 (ENSPEMG00000014010) Or2t1 (ENSPEMG00000014201) Or2t35 (ENSPEMG00000030359) Slc4a7 (ENSPEMG00000020169) Nek10 (ENSPEMG00000002287) ENSPEMG00000027561 Lrrc3b (ENSPEMG00000007539) Oxsm (ENSPEMG00000007951) Ngly1 (ENSPEMG00000009786) Top2b (ENSPEMG00000010015) Rarb (ENSPEMG00000011795) ENSPEMG00000026685 ##22 Thrb (ENSPEMG00000013006) Nr1d2 (ENSPEMG00000014504) Rpl15 (ENSPEMG00000015540) Nkiras1 (ENSPEMG00000015836) Ube2e1 (ENSPEMG00000016554) Ube2e2 (ENSPEMG00000018980) ENSPEMG00000030952 ENSPEMG00000026001 ENSPEMG00000029844 ENSPEMG00000029653 ENSPEMG00000012583 Sftpd (ENSPEMG00000010320) Mbl1 (ENSPEMG00000017415) Sftpa1 (ENSPEMG00000027926) Mat1a (ENSPEMG00000008918) Rodentia_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Hystricomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Hystricomorpha_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Hystricomorpha_b ANCESTRAL SPECIES 34 ENSGT00950000183170.b.b ENSGT00940000156322 ENSGT00390000011570 ENSGT00520000055666.b ENSGT00390000005581.a ENSGT00940000155682 ENSGT00940000162889 ENSGT00940000162185 ENSGT00950000183022.b ENSGT00940000158212.B ENSGT00390000007989 ENSGT00940000155992 ENSGT00390000015709 ENSGT01090000259987.a.a.a ENSGT00390000004977 #21 ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00940000158193 #23 ENSGT00940000155183 ENSGT00510000047718 #24 ENSGT00390000003874 ENSGT00940000154826 ENSGT00390000011821.b ENSGT00950000182836.b.b.b.a ENSGT00390000003873 ENSGT00550000074981 ENSGT00390000003706.a.a ENSGT00940000161590 ENSGT00940000162228 ENSGT00940000161104 ENSGT00940000159292 ENSGT00390000018807 Long-tailed chinchilla MODERN SPECIES 119 MMP12 (ENSCLAG00000014288) MMP13 (ENSCLAG00000011293) DCUN1D5 (ENSCLAG00000010606) DYNC2H1 (ENSCLAG00000014268) PDGFD (ENSCLAG00000013637) DDI1 (ENSCLAG00000014263) ENSCLAG00000015891 ENSCLAG00000012832 ENSCLAG00000015719 GRIA4 (ENSCLAG00000012261) MSANTD4 (ENSCLAG00000016121) KBTBD3 (ENSCLAG00000014468) AASDHPPT (ENSCLAG00000015434) GUCY1A2 (ENSCLAG00000017060) CWF19L2 (ENSCLAG00000013844) ENSCLAG00000015715 ##22 ENSCLAG00000011087 ELMOD1 (ENSCLAG00000011927) ENSCLAG00000011651 SLC35F2 (ENSCLAG00000016324) RAB39A (ENSCLAG00000013833) CUL5 (ENSCLAG00000012699) ACAT1 (ENSCLAG00000013807) NPAT (ENSCLAG00000014595) ATM (ENSCLAG00000011868) C11orf65 (ENSCLAG00000011009) POGLUT3 (ENSCLAG00000013476) EXPH5 (ENSCLAG00000014388) DDX10 (ENSCLAG00000013463) C11orf87 (ENSCLAG00000015145) ZC3H12C (ENSCLAG00000012577) Degu DUPLICATION Degu MODERN SPECIES 100 ENSODEG00000002705 ENSODEG00000018931 ENSODEG00000018888 UBE2E2 (ENSODEG00000002776) ENSODEG00000002817 UBE2E1 (ENSODEG00000002839) NKIRAS1 (ENSODEG00000002859) ENSODEG00000002871 NR1D2 (ENSODEG00000002903) ENSODEG00000002947 THRB (ENSODEG00000002741) ENSODEG00000018882 RARB (ENSODEG00000002769) TOP2B (ENSODEG00000002867) ENSODEG00000003058 ENSODEG00000018912 ##22 NGLY1 (ENSODEG00000003087) OXSM (ENSODEG00000003134) LRRC3B (ENSODEG00000003166) NEK10 (ENSODEG00000003264) SLC4A7 (ENSODEG00000003429) EOMES (ENSODEG00000003480) AZI2 (ENSODEG00000003523) RBMS3 (ENSODEG00000003651) ENSODEG00000003736 TGFBR2 (ENSODEG00000003763) GADL1 (ENSODEG00000003807) STT3B (ENSODEG00000003894) OSBPL10 (ENSODEG00000003996) ENSODEG00000005650 GPD1L (ENSODEG00000005683) Degu MODERN SPECIES 62 SYT10 (ENSODEG00000017446) ENSODEG00000017594 ENSODEG00000020455 CPNE8 (ENSODEG00000017711) ENSODEG00000017452 ##22 KIF21A (ENSODEG00000017431) ENSODEG00000017459 ENSODEG00000017520 ASCC2 (ENSODEG00000017546) ENSODEG00000017651 ZMAT5 (ENSODEG00000017389) CABP7 (ENSODEG00000017415) NF2 (ENSODEG00000017517) ENSODEG00000017494 NIPSNAP1 (ENSODEG00000017189) ENSODEG00000017650 NEFH (ENSODEG00000017433) AP1B1 (ENSODEG00000017338) RASL10A (ENSODEG00000017393) GAS2L1 (ENSODEG00000017194) Degu MODERN SPECIES 86 YBEY (ENSODEG00000014950) MCM3AP (ENSODEG00000013662) LSS (ENSODEG00000014728) SPATC1L (ENSODEG00000013418) FTCD (ENSODEG00000013308) COL6A2 (ENSODEG00000013531) ENSODEG00000020105 ENSODEG00000013981 PCBP3 (ENSODEG00000012873) ENSODEG00000013398 ENSODEG00000020203 POFUT2 (ENSODEG00000013451) ADARB1 (ENSODEG00000014508) ITGB2 (ENSODEG00000013569) PTTG1IP (ENSODEG00000013537) #21 ENSODEG00000013838 ##22 ENSODEG00000014012 #23 ENSODEG00000013439 TSPEAR (ENSODEG00000013818) #24 PDXK (ENSODEG00000013386) AGPAT3 (ENSODEG00000012787) ENSODEG00000013648 PWP2 (ENSODEG00000013073) ENSODEG00000013954 PFKL (ENSODEG00000014418) CFAP410 (ENSODEG00000012840) TRPM2 (ENSODEG00000013043) #25 LRRC3 (ENSODEG00000020091) DSCAM (ENSODEG00000012858) BACE2 (ENSODEG00000013570) ENSODEG00000014232 Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 11 FRMD6 (ENSHGLG00000013454) GNG2 (ENSHGLG00000037657) ENSHGLG00000011931 NID2 (ENSHGLG00000012453) PTGDR (ENSHGLG00000011361) PTGER2 (ENSHGLG00000040443) TXNDC16 (ENSHGLG00000010925) ENSHGLG00000050455 GPR137C (ENSHGLG00000014860) ERO1A (ENSHGLG00000009956) PSMC6 (ENSHGLG00000012892) STYX (ENSHGLG00000009818) ENSHGLG00000014618 FERMT2 (ENSHGLG00000018139) DDHD1 (ENSHGLG00000019227) ENSHGLG00000050992 ##22 ENSHGLG00000011189 ENSHGLG00000033872 BMP4 (ENSHGLG00000010274) CDKN3 (ENSHGLG00000014824) ENSHGLG00000014302 GMFB (ENSHGLG00000038303) ENSHGLG00000045893 CGRRF1 (ENSHGLG00000032731) SAMD4A (ENSHGLG00000016968) GCH1 (ENSHGLG00000040496) ENSHGLG00000017026 WDHD1 (ENSHGLG00000015105) SOCS4 (ENSHGLG00000041390) MAPK1IP1L (ENSHGLG00000017663) LGALS3 (ENSHGLG00000019099) Naked mole-rat female MODERN SPECIES 9 OSBPL1A (ENSHGLG00000005475) ENSHGLG00000007031 ENSHGLG00000033917 TTC39C (ENSHGLG00000004150) LAMA3 (ENSHGLG00000007164) ENSHGLG00000047717 ANKRD29 (ENSHGLG00000003687) NPC1 (ENSHGLG00000004320) RMC1 (ENSHGLG00000009136) RIOK3 (ENSHGLG00000003885) TMEM241 (ENSHGLG00000005745) CABLES1 (ENSHGLG00000008124) RBBP8 (ENSHGLG00000007546) ENSHGLG00000044837 ENSHGLG00000002995 ENSHGLG00000011109 ##22 ENSHGLG00000003667 MIB1 (ENSHGLG00000003897) ABHD3 (ENSHGLG00000004626) ENSHGLG00000006069 SNRPD1 (ENSHGLG00000007152) ESCO1 (ENSHGLG00000011303) GREB1L (ENSHGLG00000017223) ENSHGLG00000003509 ENSHGLG00000040346 USP14 (ENSHGLG00000006110) THOC1 (ENSHGLG00000003712) COLEC12 (ENSHGLG00000004045) CETN1 (ENSHGLG00000050145) CLUL1 (ENSHGLG00000007174) TYMS (ENSHGLG00000003556) Sciuridae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b.f ##22 Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 12 KRT32 (ENSSVLG00005001680) KRT35 (ENSSVLG00005001626) KRT36 (ENSSVLG00005001573) KRT13 (ENSSVLG00005001499) KRT15 (ENSSVLG00005001448) KRT19 (ENSSVLG00005001412) ENSSVLG00005001389 KRT14 (ENSSVLG00005001357) KRT16 (ENSSVLG00005001321) KRT17 (ENSSVLG00005001282) ENSSVLG00005001226 EIF1 (ENSSVLG00005001188) GAST (ENSSVLG00005001171) ENSSVLG00005001138 HAP1 (ENSSVLG00005001065) ENSSVLG00005001022 ##22 ENSSVLG00005001006 JUP (ENSSVLG00005000914) P3H4 (ENSSVLG00005000841) FKBP10 (ENSSVLG00005000785) NT5C3B (ENSSVLG00005000754) KLHL10 (ENSSVLG00005000723) KLHL11 (ENSSVLG00005000699) ACLY (ENSSVLG00005000630) ODAD4 (ENSSVLG00005000556) CNP (ENSSVLG00005000524) ENSSVLG00005000498 ENSSVLG00005000476 C17orf113 (ENSSVLG00005000459) ZNF385C (ENSSVLG00005000419) DHX58 (ENSSVLG00005000354) Eurasian red squirrel MODERN SPECIES 18 HELQ (ENSSVLG00005019975) ENSSVLG00005019766 ABRAXAS1 (ENSSVLG00005019610) GPAT3 (ENSSVLG00005019557) ENSSVLG00005019498 NKX6-1 (ENSSVLG00005019440) CDS1 (ENSSVLG00005019388) WDFY3 (ENSSVLG00005019113) ARHGAP24 (ENSSVLG00005018879) MAPK10 (ENSSVLG00005018125) PTPN13 (ENSSVLG00005016102) SLC10A6 (ENSSVLG00005015893) C4orf36 (ENSSVLG00005015848) AFF1 (ENSSVLG00005015438) ENSSVLG00005015156 ENSSVLG00005015085 ##22 HSD17B13 (ENSSVLG00005014916) HSD17B11 (ENSSVLG00005014755) NUDT9 (ENSSVLG00005014673) SPARCL1 (ENSSVLG00005014496) DSPP (ENSSVLG00005014439) DMP1 (ENSSVLG00005014323) IBSP (ENSSVLG00005014230) MEPE (ENSSVLG00005014128) SPP1 (ENSSVLG00005013941) PKD2 (ENSSVLG00005013606) ENSSVLG00005013446 ENSSVLG00005013226 PPM1K (ENSSVLG00005013073) ENSSVLG00005012923 ENSSVLG00005012281 Marmotini ANCESTRAL SPECIES 42 ENSGT00940000163207 ENSGT00940000161686 ENSGT00940000161116 ENSGT00940000158003 ENSGT00390000004428.a.l.a.a.b ENSGT00390000005396 ENSGT00950000182894.A.b.b ENSGT00950000182696.B.a ENSGT00940000162568 ENSGT00940000153771.A ENSGT00940000162249 ENSGT00730000111191 ENSGT00940000157296 ENSGT00950000182979.a.b.b.b.a.c ENSGT00940000154744 ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00940000161617 ENSGT00940000159717 ENSGT00940000156854 ENSGT00940000154322.C ENSGT00940000164189 ENSGT00390000009386 ENSGT00390000014667 ENSGT00390000004323.b ENSGT00940000161575 ENSGT00940000154760.c.b ENSGT00940000154760.c.a ENSGT00940000163646 ENSGT00940000161785 ENSGT01030000235289 ENSGT00940000162543 Alpin marmot DUPLICATION Alpin marmot MODERN SPECIES 28 ENSMMMG00000005283 ENSMMMG00000005246 EMP2 (ENSMMMG00000005241) TEKT5 (ENSMMMG00000005229) NUBP1 (ENSMMMG00000005209) CIITA (ENSMMMG00000005034) DEXI (ENSMMMG00000005023) ENSMMMG00000004962 ENSMMMG00000004957 ENSMMMG00000004942 ENSMMMG00000004925 TXNDC11 (ENSMMMG00000004517) ZC3H7A (ENSMMMG00000004470) ENSMMMG00000004459 RSL1D1 (ENSMMMG00000004233) ENSMMMG00000004216 ##22 GSPT1 (ENSMMMG00000003932) Alpin marmot MODERN SPECIES 22 WASL (ENSMMMG00000015176) ENSMMMG00000015187 HYAL4 (ENSMMMG00000015235) SPAM1 (ENSMMMG00000015253) GPR37 (ENSMMMG00000015396) POT1 (ENSMMMG00000015400) GRM8 (ENSMMMG00000015527) ZNF800 (ENSMMMG00000015549) GCC1 (ENSMMMG00000015571) ARF5 (ENSMMMG00000015574) FSCN3 (ENSMMMG00000015585) PAX4 (ENSMMMG00000015595) ENSMMMG00000015616 SND1 (ENSMMMG00000015627) LRRC4 (ENSMMMG00000015704) ENSMMMG00000015714 ##22 LEP (ENSMMMG00000015724) RBM28 (ENSMMMG00000015736) PRRT4 (ENSMMMG00000015777) IMPDH1 (ENSMMMG00000015789) HILPDA (ENSMMMG00000015877) GARIN1A (ENSMMMG00000015879) GARIN1B (ENSMMMG00000015890) CALU (ENSMMMG00000015910) OPN1SW (ENSMMMG00000015924) CCDC136 (ENSMMMG00000015944) FLNC (ENSMMMG00000016242) ATP6V1F (ENSMMMG00000016346) ATP6V1FNB (ENSMMMG00000016351) LAMB4 (ENSMMMG00000016384) LAMB1 (ENSMMMG00000016413) Alpin marmot MODERN SPECIES 11 FBXO7 (ENSMMMG00000016939) BPIFC (ENSMMMG00000016944) RTCB (ENSMMMG00000016958) PRDM4 (ENSMMMG00000016969) PWP1 (ENSMMMG00000016996) ABTB3 (ENSMMMG00000017014) CRY1 (ENSMMMG00000017030) MTERF2 (ENSMMMG00000017043) TMEM263 (ENSMMMG00000017048) RIC8B (ENSMMMG00000017060) RFX4 (ENSMMMG00000017077) ENSMMMG00000017101 POLR3B (ENSMMMG00000017120) ENSMMMG00000017137 TCP11L2 (ENSMMMG00000017141) ENSMMMG00000017150 ##22 CKAP4 (ENSMMMG00000017154) NUAK1 (ENSMMMG00000017169) C12orf75 (ENSMMMG00000017181) APPL2 (ENSMMMG00000017187) WASHC4 (ENSMMMG00000017204) ALDH1L2 (ENSMMMG00000017239) NOPCHAP1 (ENSMMMG00000017266) SLC41A2 (ENSMMMG00000017275) CHST11 (ENSMMMG00000017290) TXNRD1 (ENSMMMG00000017295) ENSMMMG00000017345 NFYB (ENSMMMG00000017353) HCFC2 (ENSMMMG00000017365) GLT8D2 (ENSMMMG00000017374) TDG (ENSMMMG00000017385) Alpin marmot MODERN SPECIES 92 ELAC2 (ENSMMMG00000021323) ENSMMMG00000021322 ARHGAP44 (ENSMMMG00000021291) MYOCD (ENSMMMG00000021238) MAP2K4 (ENSMMMG00000021233) ENSMMMG00000021228 ##22 ZNF18 (ENSMMMG00000021202) DNAH9 (ENSMMMG00000021155) SHISA6 (ENSMMMG00000021148) PIRT (ENSMMMG00000021135) TMEM238L (ENSMMMG00000021132) TMEM220 (ENSMMMG00000021107) ADPRM (ENSMMMG00000021104) SCO1 (ENSMMMG00000021099) MYH3 (ENSMMMG00000021036) ENSMMMG00000020953 MYH1 (ENSMMMG00000020859) ENSMMMG00000020796 MYH8 (ENSMMMG00000020759) MYH13 (ENSMMMG00000020714) ENSMMMG00000020649 Marmotini_b ANCESTRAL SPECIES 35 ENSGT00940000163207 ENSGT00940000161686 ENSGT00940000161116 ENSGT00940000158003 ENSGT00390000004428.a.l.a.a.b ENSGT00390000005396 ENSGT00950000182894.A.b.b ENSGT00950000182696.B.a ENSGT00940000162568 ENSGT00940000153771.A ENSGT00940000162249 ENSGT00730000111191 ENSGT00940000157296 ENSGT00950000182979.a.b.b.b.a.c ENSGT00940000154744 ENSGT00950000182895.a.a.a.b.f ##22 ENSGT00940000161617 ENSGT00940000159717 ENSGT00940000156854 ENSGT00940000154322.C ENSGT00940000164189 ENSGT00390000009386 ENSGT00390000014667 ENSGT00390000004323.b ENSGT00940000161575 ENSGT00940000154760.c.b ENSGT00940000154760.c.a ENSGT00940000163646 ENSGT00940000161785 ENSGT01030000235289 ENSGT00940000162543 Arctic ground squirrel DUPLICATION Arctic ground squirrel MODERN SPECIES 77 HS3ST3A1 (ENSUPAG00010017967) ELAC2 (ENSUPAG00010017878) ARHGAP44 (ENSUPAG00010017782) MYOCD (ENSUPAG00010017746) MAP2K4 (ENSUPAG00010017714) ENSUPAG00010017710 ##22 ZNF18 (ENSUPAG00010017682) DNAH9 (ENSUPAG00010017605) SHISA6 (ENSUPAG00010017596) PIRT (ENSUPAG00010017589) TMEM238L (ENSUPAG00010017586) TMEM220 (ENSUPAG00010017577) ADPRM (ENSUPAG00010017566) SCO1 (ENSUPAG00010017558) MYH3 (ENSUPAG00010017537) ENSUPAG00010017464 MYH1 (ENSUPAG00010017334) ENSUPAG00010017274 MYH8 (ENSUPAG00010017234) ENSUPAG00010017227 MYH13 (ENSUPAG00010017113) Arctic ground squirrel MODERN SPECIES 543 ENSUPAG00010004770 ENSUPAG00010004753 GNAZ (ENSUPAG00010004743) RSPH14 (ENSUPAG00010004716) RAB36 (ENSUPAG00010004696) BCR (ENSUPAG00010004667) SPECC1L (ENSUPAG00010004655) ADORA2A (ENSUPAG00010004649) UPB1 (ENSUPAG00010004637) GUCD1 (ENSUPAG00010004627) SNRPD3 (ENSUPAG00010004612) LRRC75B (ENSUPAG00010004607) ENSUPAG00010004577 ENSUPAG00010004571 ##22 GGT5 (ENSUPAG00010004553) SUSD2 (ENSUPAG00010004527) CABIN1 (ENSUPAG00010004283) ENSUPAG00010004270 ENSUPAG00010004262 ENSUPAG00010004256 ENSUPAG00010004232 GSTT4 (ENSUPAG00010004224) Arctic ground squirrel MODERN SPECIES 308 ENSUPAG00010024003 SMIM5 (ENSUPAG00010024002) RECQL5 (ENSUPAG00010024001) ENSUPAG00010024000 ENSUPAG00010023999 LLGL2 (ENSUPAG00010023996) TSEN54 (ENSUPAG00010023995) CASKIN2 (ENSUPAG00010023994) TMEM94 (ENSUPAG00010023993) GRB2 (ENSUPAG00010023992) SLC25A19 (ENSUPAG00010023991) MIF4GD (ENSUPAG00010023990) MRPS7 (ENSUPAG00010023989) GGA3 (ENSUPAG00010023988) NUP85 (ENSUPAG00010023987) ENSUPAG00010023986 ##22 JPT1 (ENSUPAG00010023985) NT5C (ENSUPAG00010023984) ARMC7 (ENSUPAG00010023983) SLC16A5 (ENSUPAG00010023982) ENSUPAG00010023980 KCTD2 (ENSUPAG00010023979) ATP5PD (ENSUPAG00010023978) MRPL58 (ENSUPAG00010023977) CDR2L (ENSUPAG00010023976) HID1 (ENSUPAG00010023975) OTOP3 (ENSUPAG00010023974) OTOP2 (ENSUPAG00010023973) USH1G (ENSUPAG00010023972) FADS6 (ENSUPAG00010023971) FDXR (ENSUPAG00010023970) Actinopterygii ANCESTRAL SPECIES 52 ENSGT00940000178527 ENSGT00530000063753.B ENSGT00940000153882.a.b.a ENSGT00940000153882.a.a ENSGT00390000007779 ENSGT00410000025739.c.b ENSGT00940000157016 ENSGT00940000158772 ENSGT00940000154272.B ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 Reedfish MODERN SPECIES 5 mfsd6l (ENSECRG00000021117) PIK3R6 (ENSECRG00000021132) PIK3R5 (ENSECRG00000021169) ntn1b (ENSECRG00000021225) stx8 (ENSECRG00000021237) ENSECRG00000021260 cfap52 (ENSECRG00000021309) usp43a (ENSECRG00000021374) ENSECRG00000021402 grb2b (ENSECRG00000021416) slc25a19 (ENSECRG00000021437) mif4gda (ENSECRG00000021455) mrps7 (ENSECRG00000021468) gga3a (ENSECRG00000021484) NUP85 (ENSECRG00000014739) ENSECRG00000014800 ##22 ENSECRG00000014829 ENSECRG00000014882 cox11 (ENSECRG00000014913) STXBP4 (ENSECRG00000014963) hlfb (ENSECRG00000015074) mmd (ENSECRG00000015110) TMEM100 (ENSECRG00000015149) pctp (ENSECRG00000015219) ENSECRG00000015266 nog3 (ENSECRG00000015342) si:dkey-31g6.6 (ENSECRG00000015368) dgke (ENSECRG00000015406) ENSECRG00000015489 trim25 (ENSECRG00000015761) scpep1 (ENSECRG00000015803) Neopterygii ANCESTRAL SPECIES 6 ENSGT00530000063753.A ENSGT00940000178527 ENSGT00530000063753.B ENSGT00940000153882.a.b.a ENSGT00390000007779 ENSGT00410000025739.c.b ENSGT00940000157016 ENSGT00940000158772 ENSGT00940000154272.B ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.b ##22 ENSGT00940000164904 ENSGT00540000073890 ENSGT00390000013965 ENSGT00940000157195 ENSGT00940000157598 ENSGT00530000069385 ENSGT00740000117013 ENSGT00940000153470.a.b.b ENSGT00940000155386 ENSGT00390000011880 ENSGT01060000248591.a.a.b ENSGT00640000091541 Osteoglossocephalai ANCESTRAL SPECIES 26 ENSGT00530000063753.B ENSGT00940000153882.a.b.a ENSGT00940000158772.b ENSGT00940000154272.B.b ENSGT00940000155738 ENSGT00390000007779 ENSGT00410000025739.c.b ENSGT00940000157016 ENSGT00940000158772.a ENSGT00940000154272.B.a ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.a ENSGT00540000073890 ENSGT00940000157195 ENSGT00940000157598 ENSGT01030000235061 ENSGT00390000013973.B.g.a ENSGT00730000111057 ENSGT00390000005481 ENSGT00940000158838 ENSGT00940000155641.g.b ENSGT00940000164538 ENSGT00940000156498.g.b ENSGT00390000010581 ENSGT00940000153469.a.a.l ENSGT00940000155641.g.a Osteoglossiformes ANCESTRAL SPECIES 70 ENSGT00550000075117.m.a ENSGT00950000183099 ENSGT00390000000159 ENSGT00940000155858.f ENSGT00940000155159.C.cb ENSGT00440000038745.a.a.a ENSGT00530000063753.A.a ENSGT00530000063753.B ENSGT00940000153882.a.b.a ENSGT00390000007779 ENSGT00940000157016 ENSGT00940000158772.a ENSGT00940000153432.A.a.h ENSGT00390000014620 ENSGT00940000157333 ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.a ENSGT00540000073890.s ENSGT00940000157195.o ENSGT00940000157598.h.a ENSGT01030000235061.i ENSGT00730000111057.a ENSGT00940000158838 ENSGT00940000155641.h ENSGT01030000234583.a.b.b.f ENSGT00940000156498.g.b ENSGT00390000010581 ENSGT00940000153469.a.a.k ENSGT00940000153469.a.b ENSGT00390000012364.b ENSGT00390000016493 P. kingsleyae MODERN SPECIES 45 rpsa (ENSPKIG00000006794) ttc26 (ENSPKIG00000006719) ubn2a (ENSPKIG00000006635) MYH10 (ENSPKIG00000006467) pik3r6a (ENSPKIG00000006377) PIK3R6 (ENSPKIG00000006340) PIK3R5 (ENSPKIG00000006271) ENSPKIG00000006232 stx8 (ENSPKIG00000006210) cfap52 (ENSPKIG00000006146) usp43a (ENSPKIG00000006048) ENSPKIG00000006001 MIF4GD (ENSPKIG00000005974) mrps7 (ENSPKIG00000005942) gga3a (ENSPKIG00000005886) ENSPKIG00000005712 ##22 jpt1a (ENSPKIG00000005629) ENSPKIG00000005598 ENSPKIG00000005569 SEPTIN9 (ENSPKIG00000005519) TNRC6C (ENSPKIG00000005428) cd7al (ENSPKIG00000005388) ZNF207 (ENSPKIG00000005356) rhbdl3 (ENSPKIG00000005296) RHOT1 (ENSPKIG00000005229) ENSPKIG00000005202 ADAP2 (ENSPKIG00000005159) tefm (ENSPKIG00000005125) ATAD5 (ENSPKIG00000004953) crlf3 (ENSPKIG00000004843) suz12b (ENSPKIG00000004739) Clupeocephala ANCESTRAL SPECIES 173 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333.b ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.b ENSGT00390000013965 ENSGT00940000157195.m ENSGT00940000157598 ENSGT01030000235061 ENSGT00390000013973.B.g.a ENSGT00730000111057.c ENSGT00390000005481 ENSGT00940000155641.g.a ENSGT00940000156498.g.a ENSGT00940000153469.a.a.k ENSGT00940000153469.a.b ENSGT00390000012364.a ENSGT00440000033742.a.b.d ENSGT00390000004832 Euteleosteomorpha ANCESTRAL SPECIES 18 ENSGT00440000038745.a.a.a ENSGT00530000063753.A.a ENSGT00940000178527 ENSGT00530000063753.B.c ENSGT00440000038745.a.a.b ENSGT00530000063599.A ENSGT00530000063753.A.b ENSGT00530000063753.B.d ENSGT00940000153882.a.b.a ENSGT00390000007779 ENSGT00410000025739.c.b ENSGT00940000157016 ENSGT00940000158772.a ENSGT00940000154272.B.a ENSGT00940000157333.a ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.a ENSGT00540000073890 ENSGT00940000157195.n ENSGT00940000167317 ENSGT00530000069385 ENSGT00730000111057.d ENSGT00940000158838 ENSGT00940000155641.g.b ENSGT00940000164538 ENSGT00940000156498.g.b ENSGT00390000010581 ENSGT00940000153469.a.a.l ENSGT00390000012364.b ENSGT00390000016493 ENSGT00980000203447 Protacanthopterygii ANCESTRAL SPECIES 76 ENSGT00440000038745.a.a.a ENSGT00530000063753.B.c ENSGT00530000063753.A.a ENSGT00390000007779 ENSGT00410000025739.c.b ENSGT00940000157016 ENSGT00940000158772.a ENSGT00940000154272.B.a ENSGT00940000157333.a ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.a ENSGT00540000073890 ENSGT00940000157195.n ENSGT00940000167317 ENSGT00530000069385 ENSGT00730000111057.d ENSGT00940000158838 ENSGT00940000155641.g.b ENSGT00940000164538 ENSGT00940000156498.g.b ENSGT00390000010581 ENSGT00940000153469.a.a.l ENSGT00390000012364.b ENSGT00390000016493 ENSGT00440000033742.a.b.c Northern pike MODERN SPECIES 8 rpsa (ENSELUG00000034180) ttc26 (ENSELUG00000005781) ubn2a (ENSELUG00000005853) ENSELUG00000005911 pik3r6a (ENSELUG00000005950) PIK3R6 (ENSELUG00000005993) PIK3R5 (ENSELUG00000006043) ntn1a (ENSELUG00000006083) stx8 (ENSELUG00000006104) ENSELUG00000006124 cfap52 (ENSELUG00000006165) usp43a (ENSELUG00000000196) MCHR1 (ENSELUG00000006206) grb2a (ENSELUG00000006226) gga3a (ENSELUG00000006269) ENSELUG00000006289 ##22 jpt1a (ENSELUG00000031046) ENSELUG00000006345 ENSELUG00000006478 ADAP2 (ENSELUG00000006554) tefm (ENSELUG00000006522) atad5b (ENSELUG00000029348) suz12b (ENSELUG00000006584) utp6 (ENSELUG00000006618) rab11fip4b (ENSELUG00000006705) ENSELUG00000006729 DDX39A (ENSELUG00000006779) EVI5L (ENSELUG00000006910) ENSELUG00000030302 ENSELUG00000006948 ENSELUG00000032480 Salmoninae ANCESTRAL SPECIES 1434 ENSGT00940000157333.b.b ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.a.h Salmoninae_a ANCESTRAL SPECIES 82 ENSGT00550000075117.m.a.a ENSGT00950000183099.b.b ENSGT00940000155858.f.c.b ENSGT00940000155159.C.bd.b ENSGT00440000038745.a.a.a.b ENSGT00530000063753.A.a.d ENSGT00530000063753.B.c.f ENSGT00940000153882.a.b.a.a.b ENSGT00390000007779.f ENSGT00410000025739.c.b.i ENSGT00940000157016.e.b ENSGT00940000158772.a.a ENSGT00940000154272.B.a.f ENSGT00940000155738.k.a ENSGT00940000157333.a.j ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.a.g.a ENSGT00540000073890.q.b ENSGT00540000073890.r ENSGT00940000157195.n.e ENSGT00940000167317.c.a ENSGT00530000069385.d.a ENSGT00730000111057.d.c ENSGT00940000158838.b ENSGT00940000155641.g.b.e ENSGT00940000164538.d.c.a ENSGT00940000156498.g.b.d ENSGT00390000010581.b ENSGT00940000153469.a.a.l ENSGT00390000012364.b.d ENSGT00390000016493.k Salmo ANCESTRAL SPECIES 41 ENSGT00390000013817.c ENSGT00940000172275 ENSGT00390000019377.b.e.d.b ENSGT00390000012496.a.c.b ENSGT00940000164480.a.a.g.a.b ENSGT00980000198666 ENSGT00390000009178.g ENSGT01090000260082.d.a.b.q.a.b ENSGT00940000155107.b.a.f ENSGT00940000155063.a.b.c ENSGT00440000033329.b.a.a.c.b ENSGT00390000014839.b.f.a ENSGT00940000164909.e.b.k ENSGT00390000004977.d.b.f #21 ENSGT00950000182895.a.b.v.j.a.a #22 ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.a.g.b.a ENSGT00540000073890.q.a ENSGT01060000250127 ENSGT00940000157267.b ENSGT00940000155489.a.c.b ENSGT00950000183009.db.a.a.b ENSGT00940000155099.k.b.e.b.b ENSGT00390000000673.a.b.d ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.a.b ENSGT00940000156207.b.c.a.a.b.a ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.a.a ENSGT00390000004600.b.a.g ENSGT00950000183071.a.a.b.c.a.b ENSGT00940000166763.d ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.a.a.a.b.b.b Atlantic salmon MODERN SPECIES 8 ENSSSAG00000091740 ENSSSAG00000005996 ENSSSAG00000006024 ENSSSAG00000006094 ENSSSAG00000066489 ENSSSAG00000088817 ENSSSAG00000006277 ENSSSAG00000006327 ENSSSAG00000006617 ENSSSAG00000007990 ENSSSAG00000008597 ENSSSAG00000078373 ENSSSAG00000072544 ENSSSAG00000072552 ENSSSAG00000072622 ENSSSAG00000072718 ##22 ENSSSAG00000072729 ENSSSAG00000072814 ENSSSAG00000072819 ENSSSAG00000072836 ENSSSAG00000101873 ENSSSAG00000121488 ENSSSAG00000119394 ENSSSAG00000072947 ENSSSAG00000072938 uggt1 (ENSSSAG00000072953) ENSSSAG00000073029 otomp (ENSSSAG00000073035) ENSSSAG00000073038 acvr1l (ENSSSAG00000073041) ENSSSAG00000096061 River trout DUPLICATION River trout MODERN SPECIES 31 rpsa (ENSSTUG00000045701) ttc26 (ENSSTUG00000045803) ubn2a (ENSSTUG00000045949) ENSSTUG00000046006 ENSSTUG00000046318 ENSSTUG00000046328 PIK3R6 (ENSSTUG00000046343) PIK3R5 (ENSSTUG00000046374) ntn1a (ENSSTUG00000046413) stx8 (ENSSTUG00000046505) ENSSTUG00000046518 CFAP52 (ENSSTUG00000046531) usp43a (ENSSTUG00000046569) grb2a (ENSSTUG00000046592) gga3a (ENSSTUG00000046624) ENSSTUG00000046706 ##22 jpt1a (ENSSTUG00000046757) ENSSTUG00000046764 ENSSTUG00000046769 septin9b (ENSSTUG00000046786) ENSSTUG00000046904 ENSSTUG00000047145 ZNF207 (ENSSTUG00000047149) rhot1b (ENSSTUG00000047225) ENSSTUG00000048355 ENSSTUG00000048379 tefm (ENSSTUG00000048438) suz12b (ENSSTUG00000048514) utp6 (ENSSTUG00000048980) rab11fip4b (ENSSTUG00000049020) ENSSTUG00000049061 River trout MODERN SPECIES 5 ENSSTUG00000002189 ENSSTUG00000001852 ENSSTUG00000001836 PIK3R6 (ENSSTUG00000001814) PIK3R5 (ENSSTUG00000001761) ENSSTUG00000018354 ntn1a (ENSSTUG00000018314) ENSSTUG00000018303 stx8 (ENSSTUG00000018268) ENSSTUG00000018250 CFAP52 (ENSSTUG00000018247) usp43a (ENSSTUG00000018230) MCHR1 (ENSSTUG00000018225) grb2a (ENSSTUG00000018218) gga3a (ENSSTUG00000017819) ENSSTUG00000017730 ##22 ENSSTUG00000017725 jpt1a (ENSSTUG00000017706) ENSSTUG00000017695 ENSSTUG00000017684 septin9b (ENSSTUG00000017371) ENSSTUG00000017348 ENSSTUG00000017204 ENSSTUG00000017186 znf207b (ENSSTUG00000017156) rhbdl3 (ENSSTUG00000017111) rhot1b (ENSSTUG00000015885) ENSSTUG00000015847 ADAP2 (ENSSTUG00000015811) tefm (ENSSTUG00000015800) ENSSTUG00000015774 Oncorhynchus ANCESTRAL SPECIES 1 ENSGT00950000183099.b.b ENSGT00390000000159.j.d ENSGT00940000155858.f.c.b ENSGT00940000155159.C.bd.b ENSGT00440000038745.a.a.a.b ENSGT00530000063753.A.a.d ENSGT00530000063753.B.c.f ENSGT00940000153882.a.b.a.a.b ENSGT00390000007779.f ENSGT00410000025739.c.b.i ENSGT00940000157016.e.b ENSGT00940000158772.a.a ENSGT00940000154272.B.a.f ENSGT00940000155738.k.a ENSGT00940000157333.a.j ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.a.g.a ENSGT00540000073890.q.b ENSGT00540000073890.r ENSGT00940000157195.n.e ENSGT00940000167317.c.a ENSGT00730000111057.d.c ENSGT00940000158838.b ENSGT00940000155641.g.b.e ENSGT00940000164538.d.c.a ENSGT00940000156498.g.b.d ENSGT00390000010581.b ENSGT00940000153469.a.a.l ENSGT00390000012364.b.d ENSGT00390000016493.k ENSGT00440000033742.a.b.c.b Oncorhynchus_a ANCESTRAL SPECIES 51 ENSGT00950000183099.b.b ENSGT00390000000159.j.d ENSGT00940000155858.f.d ENSGT00940000155159.C.bd.b ENSGT00440000038745.a.a.a.b ENSGT00530000063753.A.a.d ENSGT00530000063753.B.c.f ENSGT00940000153882.a.b.a.a.b ENSGT00390000007779.f ENSGT00410000025739.c.b.i ENSGT00940000157016.e.b ENSGT00940000158772.a.a ENSGT00940000154272.B.a.f ENSGT00940000155738.k.a ENSGT00940000157333.a.j ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.a.g.a ENSGT00540000073890.q.b ENSGT00540000073890.r ENSGT00940000157195.n.e ENSGT00940000167317.c.a ENSGT00730000111057.d.c ENSGT00940000158838.b ENSGT00940000155641.g.b.e ENSGT00940000164538.d.c.a ENSGT00940000156498.g.b.d ENSGT00390000010581.b ENSGT00940000153469.a.a.l ENSGT00390000012364.b.d ENSGT00390000016493.k ENSGT00440000033742.a.b.c.b Coho salmon MODERN SPECIES slc25a38b (ENSOKIG00005017763) ttc26 (ENSOKIG00005017325) ubn2a (ENSOKIG00005017238) ENSOKIG00005004655 ENSOKIG00005003758 PIK3R6 (ENSOKIG00005003744) PIK3R5 (ENSOKIG00005003615) ntn1a (ENSOKIG00005003576) stx8 (ENSOKIG00005003553) ENSOKIG00005003543 cfap52 (ENSOKIG00005003492) usp43a (ENSOKIG00005003464) MCHR1 (ENSOKIG00005003456) grb2a (ENSOKIG00005003445) gga3a (ENSOKIG00005003304) ENSOKIG00005003250 ##22 jpt1a (ENSOKIG00005003233) ENSOKIG00005003224 ENSOKIG00005003219 ENSOKIG00005003213 septin9b (ENSOKIG00005003011) ENSOKIG00005002930 ENSOKIG00005002907 znf207b (ENSOKIG00005002881) rhbdl3 (ENSOKIG00005002846) rhot1b (ENSOKIG00005002821) ENSOKIG00005002816 ENSOKIG00005002813 ENSOKIG00005002809 ADAP2 (ENSOKIG00005002786) tefm (ENSOKIG00005002774) Chinook salmon DUPLICATION Chinook salmon MODERN SPECIES 19 trir (ENSOTSG00005013560) HOOK2 (ENSOTSG00005013561) ENSOTSG00005013708 junbb (ENSOTSG00005013709) ENSOTSG00005013710 rtbdn (ENSOTSG00005013711) MAST1 (ENSOTSG00005013712) ATG4D (ENSOTSG00005014555) ENSOTSG00005014556 ENSOTSG00005014557 ENSOTSG00005014558 slc25a19 (ENSOTSG00005014559) MIF4GD (ENSOTSG00005014564) mrps7 (ENSOTSG00005014567) GGA3 (ENSOTSG00005014572) ENSOTSG00005014782 ##22 ENSOTSG00005014783 ##22 srebf1 (ENSOTSG00005014784) TOM1L2 (ENSOTSG00005014787) drc3 (ENSOTSG00005014802) GID4 (ENSOTSG00005014804) noxo1a (ENSOTSG00005014805) tbl3 (ENSOTSG00005014807) RNF151 (ENSOTSG00005016365) rps2 (ENSOTSG00005016375) RPL3L (ENSOTSG00005016377) ndufb10 (ENSOTSG00005016383) ndufb10 (ENSOTSG00005016385) ENSOTSG00005016386 ENSOTSG00005016388 ENSOTSG00005016389 Chinook salmon DUPLICATION Chinook salmon MODERN SPECIES 11 ttc26 (ENSOTSG00005022317) ubn2a (ENSOTSG00005022370) ENSOTSG00005022373 ENSOTSG00005023035 ENSOTSG00005023036 PIK3R5 (ENSOTSG00005023037) ntn1a (ENSOTSG00005023521) stx8 (ENSOTSG00005023536) ENSOTSG00005023538 ENSOTSG00005023539 cfap52 (ENSOTSG00005023540) usp43a (ENSOTSG00005023541) MCHR1 (ENSOTSG00005023543) grb2a (ENSOTSG00005023545) gga3a (ENSOTSG00005023547) ENSOTSG00005024659 ##22 jpt1a (ENSOTSG00005024675) ENSOTSG00005024676 ENSOTSG00005024677 ENSOTSG00005024678 septin9b (ENSOTSG00005024686) ENSOTSG00005024710 znf207b (ENSOTSG00005024711) rhbdl3 (ENSOTSG00005024713) rhot1b (ENSOTSG00005024714) ENSOTSG00005025168 ADAP2 (ENSOTSG00005025170) tefm (ENSOTSG00005025171) ENSOTSG00005025172 utp6 (ENSOTSG00005025176) rab11fip4b (ENSOTSG00005026912) Chinook salmon MODERN SPECIES 25 rpsa (ENSOTSG00005013922) ttc26 (ENSOTSG00005013937) ubn2a (ENSOTSG00005013940) ENSOTSG00005013952 ENSOTSG00005019658 ENSOTSG00005019659 PIK3R6 (ENSOTSG00005019660) PIK3R5 (ENSOTSG00005019661) ntn1a (ENSOTSG00005019662) stx8 (ENSOTSG00005019663) ENSOTSG00005019665 cfap52 (ENSOTSG00005019690) MCHR1 (ENSOTSG00005019726) grb2a (ENSOTSG00005019729) gga3a (ENSOTSG00005019737) ENSOTSG00005022388 ##22 jpt1a (ENSOTSG00005022390) ENSOTSG00005022392 ENSOTSG00005022395 ENSOTSG00005022399 ENSOTSG00005022437 ZNF207 (ENSOTSG00005022440) rhbdl3 (ENSOTSG00005022445) rhot1b (ENSOTSG00005022460) ENSOTSG00005022607 ENSOTSG00005022608 tefm (ENSOTSG00005022611) suz12b (ENSOTSG00005022615) utp6 (ENSOTSG00005023247) rab11fip4b (ENSOTSG00005023910) ENSOTSG00005024360 Rainbow trout DUPLICATION Rainbow trout DUPLICATION Rainbow trout MODERN SPECIES 9 ENSOMYG00000016525 ENSOMYG00000016209 ENSOMYG00000016168 ENSOMYG00000016165 ENSOMYG00000016163 ENSOMYG00000057949 ENSOMYG00000054440 ENSOMYG00000075427 ENSOMYG00000049322 ENSOMYG00000016156 ENSOMYG00000015966 ENSOMYG00000032300 ENSOMYG00000032093 ENSOMYG00000032074 ENSOMYG00000032031 ENSOMYG00000031982 ##22 ENSOMYG00000031943 #24 ENSOMYG00000031847 ENSOMYG00000031785 ENSOMYG00000031683 ENSOMYG00000031530 ENSOMYG00000031443 ENSOMYG00000031318 ENSOMYG00000031275 ENSOMYG00000031259 ENSOMYG00000031247 uggt1 (ENSOMYG00000030624) ENSOMYG00000053703 ENSOMYG00000030085 otomp (ENSOMYG00000030021) acvr1l (ENSOMYG00000029939) Rainbow trout MODERN SPECIES 28 ENSOMYG00000068793 ENSOMYG00000035916 ENSOMYG00000035252 ENSOMYG00000035142 ENSOMYG00000057623 ENSOMYG00000035136 ENSOMYG00000033385 ENSOMYG00000031214 ENSOMYG00000030884 ENSOMYG00000030736 ENSOMYG00000030561 ENSOMYG00000030271 ENSOMYG00000055704 ENSOMYG00000077588 ENSOMYG00000030155 #21 ENSOMYG00000030120 ##22 ENSOMYG00000029816 ENSOMYG00000007792 ENSOMYG00000007737 ENSOMYG00000007652 OLA1 (ENSOMYG00000007476) ENSOMYG00000056207 ENSOMYG00000007103 uggt1 (ENSOMYG00000006857) ENSOMYG00000054008 ENSOMYG00000073951 otomp (ENSOMYG00000006550) ENSOMYG00000006485 acvr1l (ENSOMYG00000006432) d2hgdh (ENSOMYG00000006336) ENSOMYG00000006146 Rainbow trout MODERN SPECIES 8 rpsa (ENSOMYG00000043879) ttc26 (ENSOMYG00000043952) ubn2a (ENSOMYG00000044095) ENSOMYG00000044229 ENSOMYG00000045822 PIK3R6 (ENSOMYG00000045828) PIK3R5 (ENSOMYG00000045841) ntn1a (ENSOMYG00000045858) stx8 (ENSOMYG00000045864) ENSOMYG00000045873 cfap52 (ENSOMYG00000045879) usp43a (ENSOMYG00000045885) ENSOMYG00000076222 grb2a (ENSOMYG00000045892) gga3a (ENSOMYG00000045917) ENSOMYG00000046027 ##22 hn1 (ENSOMYG00000046035) ENSOMYG00000061204 ENSOMYG00000057320 ENSOMYG00000046050 septin9b (ENSOMYG00000059396) ENSOMYG00000046088 ZNF207 (ENSOMYG00000046126) ENSOMYG00000046132 rhot1b (ENSOMYG00000046138) ENSOMYG00000046150 ADAP2 (ENSOMYG00000046156) tefm (ENSOMYG00000046177) atad5b (ENSOMYG00000046186) suz12b (ENSOMYG00000046196) utp6 (ENSOMYG00000046210) Acanthomorphata ANCESTRAL SPECIES 2 ENSGT00940000167161 ENSGT00940000163144.a.b ENSGT00940000163144.a.a.b ENSGT00940000163861.a ENSGT00390000015826 ENSGT00530000064692.A ENSGT01050000244893.c.b.b.b ENSGT00390000007786.a.b ENSGT00940000163128.a ENSGT00940000175870 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333.b ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.b ENSGT01030000235004 ENSGT00940000157195.m ENSGT00940000157598 ENSGT00390000013973.B.g.a ENSGT00730000111057.c ENSGT00390000005481 ENSGT00940000155641.g.a ENSGT00940000156498.g.a ENSGT00940000153469.a.a.k ENSGT00940000156051.c.a ENSGT01050000244879.a.b.e ENSGT00940000154396.b.a.a.a ENSGT00940000155603.B ENSGT00940000156708.a.b Euacanthomorphacea ANCESTRAL SPECIES 5 ENSGT00940000158475 ENSGT00940000167161 ENSGT00940000163144.a.b ENSGT00940000163144.a.a.b ENSGT00940000163861.a ENSGT00390000015826 ENSGT00530000064692.A ENSGT01050000244893.c.b.b.b ENSGT00390000007786.a.b ENSGT00940000160720.b.b ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333.b ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.b ENSGT01030000235004 ENSGT00940000157195.m ENSGT00940000157598 ENSGT01030000234567.B.a.b.a.b.a ENSGT01030000234567.B.a.b.b ENSGT00390000013973.B.g.a ENSGT00730000111057.c ENSGT00390000005481 ENSGT00940000155641.g.a ENSGT00940000156498.g.a ENSGT00940000153469.a.a.k ENSGT00940000162556.E.a ENSGT00940000162556.E.b.a ENSGT00940000156051.c.a Percomorphaceae ANCESTRAL SPECIES 3 ENSGT00940000158475 ENSGT00940000167161 ENSGT00940000163144.a.b ENSGT00940000163144.a.a.b ENSGT00940000163861.a ENSGT00390000015826 ENSGT00530000064692.A ENSGT01050000244893.c.b.b.b ENSGT00390000007786.a.b ENSGT00940000160720.b.b ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333.b ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.b ENSGT01030000235004 ENSGT00940000157195.m ENSGT00730000111690.A.a.b ENSGT00940000157598 ENSGT01030000234567.B.a.b.a.b.a ENSGT01030000234567.B.a.b.b ENSGT00390000013973.B.g.a ENSGT00730000111057.c ENSGT00390000005481 ENSGT00940000155641.g.a ENSGT00940000156498.g.a ENSGT00940000153469.a.a.k ENSGT00940000162556.E.a ENSGT00940000162556.E.b.a Percomorphaceae_B ANCESTRAL SPECIES 2 ENSGT00940000163144.a.b ENSGT00940000163144.a.a.b ENSGT00940000163861.a ENSGT00390000015826 ENSGT00530000064692.A ENSGT01050000244893.c.b.b.b ENSGT00390000007786.a.b ENSGT00940000161847.b.a.e.a.b.d ENSGT00950000183127.c.b.d.a.a.b ENSGT00940000160720.b.b ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333.b ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.b ENSGT01030000235004 ENSGT00730000111690.A.a.b ENSGT00730000111690.A.a.a ENSGT00940000157195.m ENSGT00940000157598 ENSGT01030000237991 ENSGT01030000234567.B.a.b.a.b.a ENSGT01030000234567.B.a.b.b ENSGT00390000013973.B.g.a ENSGT00730000111057.c ENSGT00390000005481 ENSGT00940000155641.g.a ENSGT00940000156498.g.a ENSGT00940000153469.a.a.k Percomorphaceae_C ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 Percomorphaceae_D ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 Carangaria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 Pleuronectoidei ANCESTRAL SPECIES 9 ENSGT00940000158179.b ENSGT00940000157608 ENSGT00940000164537 ENSGT00390000006618 ENSGT00940000157516 ENSGT00940000163412 ENSGT00940000154913 ENSGT00950000183009.db.b ENSGT00940000161051.a.a.a.a.a ENSGT00940000154856.A.a.d ENSGT00390000005911 ENSGT00950000182942.a.b ENSGT00940000164909.e.a.f ENSGT00940000164909.e.a.e ENSGT00390000004977.d.a #21 ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000155515.a.b.b ENSGT00930000150980.a ENSGT00390000010523.c.b ENSGT00940000158904 ENSGT01080000257365.b.a.a.b.a ENSGT00950000183038.a.b.b.b.q ENSGT00940000159241 ENSGT00650000094711 ENSGT00530000063734.a ENSGT00940000158842 ENSGT00940000164733 ENSGT00390000014376.c.a ENSGT00940000161094 ENSGT00940000153988.A ENSGT00940000155773.b Turbot MODERN SPECIES 5 xrcc5 (ENSSMAG00000010286) ENSSMAG00000010326 MARCHF4 (ENSSMAG00000010382) SMARCAL1 (ENSSMAG00000010427) nme9 (ENSSMAG00000010453) zgc:162707 (ENSSMAG00000010513) ehhadh (ENSSMAG00000010530) tmem41aa (ENSSMAG00000010541) igf2bp2a (ENSSMAG00000010576) tra2b (ENSSMAG00000010614) ENSSMAG00000010627 ENSSMAG00000010640 glb1l (ENSSMAG00000010689) ENSSMAG00000010739 ENSSMAG00000010851 #21 ENSSMAG00000010862 ##22 FMNL2 (ENSSMAG00000011027) prpf40a (ENSSMAG00000011226) RPRM (ENSSMAG00000011302) GALNT13 (ENSSMAG00000011337) KCNJ3 (ENSSMAG00000011386) nr4a2a (ENSSMAG00000011394) GALNT5 (ENSSMAG00000011431) CYTIP (ENSSMAG00000011461) ACVR1C (ENSSMAG00000011491) ENSSMAG00000011522 ENSSMAG00000011547 UPP2 (ENSSMAG00000011565) CCDC148 (ENSSMAG00000011580) PKP4 (ENSSMAG00000011630) dap1b (ENSSMAG00000026711) Eupercaria ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 Eupecaria_A ANCESTRAL SPECIES 5 ENSGT00940000163144.a.a.b ENSGT00940000163861.a ENSGT00390000015826 ENSGT00530000064692.A ENSGT01050000244893.c.b.b.b ENSGT00390000007786.a.b ENSGT00940000161847.b.a.e.a.b.d ENSGT00950000183127.c.b.d.a.a.b ENSGT00940000163128.a ENSGT00940000160720.b.b ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333.b ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.b ENSGT01030000235004 ENSGT00730000111690.A.a.b ENSGT00730000111690.A.a.a ENSGT00940000157195.m ENSGT00940000157598 ENSGT01030000234567.B.a.b.a.b.a ENSGT01030000234567.B.a.b.b ENSGT00390000013973.B.g.a ENSGT00730000111057.c ENSGT00390000005481 ENSGT00940000155641.g.a ENSGT00940000156498.g.a ENSGT00940000153469.a.a.k ENSGT00940000162556.D.b.b Eupecaria_B ANCESTRAL SPECIES ENSGT00940000163144.a.b ENSGT00940000163144.a.a.b ENSGT00940000163861.a ENSGT00390000015826 ENSGT00530000064692.A ENSGT01050000244893.c.b.b.b ENSGT00390000007786.a.b ENSGT00940000161847.b.a.e.a.b.d ENSGT00950000183127.c.b.d.a.a.b ENSGT00940000160720.b.b ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333.b ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.b ENSGT01030000235004 ENSGT00730000111690.A.a.b ENSGT00730000111690.A.a.a ENSGT00940000157195.m ENSGT00940000157598 ENSGT01030000234567.B.a.b.a.b.a ENSGT01030000234567.B.a.b.b ENSGT00390000013973.B.g.a ENSGT00730000111057.c ENSGT00390000005481 ENSGT00940000155641.g.a ENSGT00940000156498.g.a ENSGT00940000153469.a.a.k ENSGT00940000162556.D.b.b Perciformes ANCESTRAL SPECIES 1 ENSGT00940000163144.a.b ENSGT00940000163144.a.a.b ENSGT00940000163861.a ENSGT00390000015826 ENSGT00530000064692.A ENSGT01050000244893.c.b.b.b ENSGT00390000007786.a.b ENSGT00940000161847.b.a.e.a.b.d ENSGT00950000183127.c.b.d.a.a.b ENSGT00940000160720.b.b ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333.b ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.b ENSGT01030000235004 ENSGT00730000111690.A.a.a.f ENSGT00940000157195.m ENSGT00730000111690.A.a.a.e.b ENSGT00940000157598 ENSGT01030000234567.B.a.b.a.b.a ENSGT01030000234567.B.a.b.b ENSGT00730000111057.c ENSGT00390000005481 ENSGT00940000155641.g.a ENSGT00940000156498.g.a ENSGT00940000153469.a.a.k ENSGT00940000156051.c.a ENSGT01050000244879.a.b.e Perciformes_a ANCESTRAL SPECIES 1 ENSGT00940000163144.a.b ENSGT00940000163144.a.a.b ENSGT00940000163861.a ENSGT00390000015826 ENSGT00530000064692.A ENSGT01050000244893.c.b.b.b ENSGT00390000007786.a.b ENSGT00940000161847.b.a.e.a.b.d ENSGT00950000183127.c.b.d.a.a.b ENSGT00940000160720.b.b ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333.b ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.b ENSGT01030000235004 ENSGT00730000111690.A.a.a.f ENSGT00940000157195.m ENSGT00730000111690.A.a.a.e.b ENSGT00940000157598 ENSGT01030000234567.B.a.b.a.b.a ENSGT01030000234567.B.a.b.b ENSGT00730000111057.c ENSGT00390000005481 ENSGT00940000155641.g.a ENSGT00940000156498.g.a ENSGT00940000153469.a.a.k ENSGT00940000156051.c.a ENSGT01050000244879.a.b.e Channel bull blenny MODERN SPECIES 22 pvalb5 (ENSCGOG00000011016) pvalb4 (ENSCGOG00000011020) pvalb8 (ENSCGOG00000011026) aimp2 (ENSCGOG00000011032) ENSCGOG00000011035 cacng4b (ENSCGOG00000011037) CACNG1 (ENSCGOG00000011040) ENSCGOG00000011044 ENSCGOG00000011048 PITPNC1 (ENSCGOG00000011050) slc25a19 (ENSCGOG00000011067) mif4gda (ENSCGOG00000011070) mrps7 (ENSCGOG00000011073) GGA3 (ENSCGOG00000011087) NUP85 (ENSCGOG00000011671) ENSCGOG00000011814 ##22 jpt1b (ENSCGOG00000011824) ENSCGOG00000011825 septin9a (ENSCGOG00000011832) ENSCGOG00000011913 ENSCGOG00000003851 ENSCGOG00000003869 ENSCGOG00000003889 ENSCGOG00000003898 ENSCGOG00000003904 TNRC6C (ENSCGOG00000003917) ENSCGOG00000004007 ENSCGOG00000004380 ENSCGOG00000004383 ENSCGOG00000004399 ENSCGOG00000004409 Ovalentaria ANCESTRAL SPECIES ENSGT00740000117013.a ENSGT00940000163566.a.b.a.a ENSGT00950000182803.A.a.b.k.a ENSGT00440000038745.a.a.a ENSGT00530000063753.A.a ENSGT00940000178527 ENSGT00530000063753.B.c ENSGT00940000153882.a.a ENSGT00390000007779 ENSGT00410000025739.c.b ENSGT00940000156207.b.c.b ENSGT00940000157016 ENSGT00940000158772.a ENSGT00940000154272.B.a ENSGT00940000157333.a ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.a ENSGT00540000073890 ENSGT00540000073399 ENSGT00940000157195.n ENSGT00940000167317 ENSGT00530000069385 ENSGT00730000111057.d ENSGT00940000158838 ENSGT00940000155641.g.b ENSGT00940000156498.g.b ENSGT00390000010581 ENSGT00940000153469.a.a.l ENSGT00390000012364.b ENSGT00390000016493 ENSGT00980000203447 Ovalentaria_B ANCESTRAL SPECIES ENSGT00940000163144.a.b ENSGT00940000163144.a.a.b ENSGT00940000163861.a ENSGT00390000015826 ENSGT00530000064692.A ENSGT01050000244893.c.b.b.b ENSGT00390000007786.a.b ENSGT00940000161847.b.a.e.a.b.d ENSGT00950000183127.c.b.d.a.a.b ENSGT00940000160720.b.b ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333.b ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.b ENSGT01030000235004 ENSGT00730000111690.A.a.a.b ENSGT00730000111690.A.a.a.a.a ENSGT00940000157195.m ENSGT00730000111690.A.a.b ENSGT00730000111690.A.a.a.a.b ENSGT00940000157598 ENSGT01030000234567.B.a.b.a.b.a ENSGT01030000234567.B.a.b.b ENSGT00390000013973.B.g.a ENSGT00730000111057.c ENSGT00390000005481 ENSGT00940000155641.g.a ENSGT00940000156498.g.a Pomacentridae ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 Bicolor damselfish MODERN SPECIES 1597 ENSSPAG00000009307 tra2b (ENSSPAG00000009321) ENSSPAG00000009333 ENSSPAG00000009356 ANKZF1 (ENSSPAG00000009390) glb1l (ENSSPAG00000009412) ENSSPAG00000009449 ENSSPAG00000009530 #21 ENSSPAG00000009549 ##22 FMNL2 (ENSSPAG00000009684) Cichlidae ANCESTRAL SPECIES 16 ENSGT00940000163144.a.a.b ENSGT00940000163861.a ENSGT00390000015826 ENSGT00530000064692.A ENSGT01050000244893.c.b.b.b ENSGT00390000007786.a.b ENSGT00940000161847.b.a.e.a.b.d.f ENSGT00940000161847.b.a.e.a.b.d.e ENSGT00950000183127.c.b.d.a.a.b ENSGT00940000160720.b.b ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333.b ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.b ENSGT01030000235004 ENSGT00730000111690.A.a.b ENSGT00730000111690.A.a.a.a.b ENSGT00730000111690.A.a.a.a.a.b ENSGT00940000157195.m ENSGT00940000157598 ENSGT01030000234567.B.a.b.a.b.a ENSGT01030000234567.B.a.b.b ENSGT00390000013973.B.g.a ENSGT00730000111057.c ENSGT00390000005481 ENSGT00940000155641.g.a ENSGT00940000156498.g.a ENSGT00940000153469.a.a.k Midas cichlid MODERN SPECIES 1179 DDX39A (ENSACIG00000007948) ENSACIG00000008008 MGAT5B (ENSACIG00000008175) ENSACIG00000008211 prpsap1 (ENSACIG00000008222) pik3r6a (ENSACIG00000008249) PIK3R5 (ENSACIG00000008265) ENSACIG00000008373 ENSACIG00000008400 ENSACIG00000008420 ENSACIG00000008474 cfap52 (ENSACIG00000008493) usp43a (ENSACIG00000008562) MCHR1 (ENSACIG00000008598) ENSACIG00000008617 ENSACIG00000008658 ##22 jpt1a (ENSACIG00000008808) ENSACIG00000008823 Pseudocrenilabrinae ANCESTRAL SPECIES 1 ENSGT00940000163144.a.a.b ENSGT00940000163861.a ENSGT00390000015826 ENSGT00530000064692.A ENSGT01050000244893.c.b.b.b ENSGT00390000007786.a.b ENSGT00940000161847.b.a.e.a.b.d.f ENSGT00940000161847.b.a.e.a.b.d.e ENSGT00950000183127.c.b.d.a.a.b ENSGT00940000160720.b.b ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333.b ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.b ENSGT01030000235004 ENSGT00730000111690.A.a.b ENSGT00730000111690.A.a.a.a.b.a.b ENSGT00730000111690.A.a.a.a.a.b ENSGT00940000157195.m ENSGT00940000157598 ENSGT01030000234567.B.a.b.a.b.a ENSGT00730000111690.A.a.a.a.b.b.b ENSGT00730000111690.A.a.a.a.b.a.a ENSGT00390000013973.B.g.a ENSGT00730000111057.c ENSGT00390000005481 ENSGT00940000155641.g.a ENSGT00940000156498.g.a Nile tilapia MODERN SPECIES 18 MGAT5B (ENSONIG00000018172) ENSONIG00000042417 PRPSAP1 (ENSONIG00000018166) pik3r6a (ENSONIG00000018164) ENSONIG00000018161 ENSONIG00000040679 PIK3R5 (ENSONIG00000018156) ENSONIG00000018154 stx8 (ENSONIG00000018150) ENSONIG00000018147 ENSONIG00000037781 ENSONIG00000018141 MCHR1 (ENSONIG00000018140) gga3a (ENSONIG00000018133) ENSONIG00000031471 ##22 ENSONIG00000041797 ##22 jpt1a (ENSONIG00000030696) ENSONIG00000038898 ENSONIG00000028693 ENSONIG00000041271 septin9b (ENSONIG00000018125) ENSONIG00000018123 ENSONIG00000031668 znf207b (ENSONIG00000018117) rhbdl3 (ENSONIG00000018113) rhot1b (ENSONIG00000018110) ADAP2 (ENSONIG00000018106) tefm (ENSONIG00000042983) atad5b (ENSONIG00000018102) suz12b (ENSONIG00000018096) utp6 (ENSONIG00000018090) Pseudocrenilabrinae_A ANCESTRAL SPECIES 12 ENSGT00940000163144.a.b ENSGT00940000163144.a.a.b ENSGT00940000163861.a ENSGT00390000015826 ENSGT00530000064692.A ENSGT01050000244893.c.b.b.b ENSGT00390000007786.a.b ENSGT00940000161847.b.a.e.a.b.d.f ENSGT00950000183127.c.b.d.a.a.b.h ENSGT00940000160720.b.b ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333.b ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.b ENSGT01030000235004 ENSGT00730000111690.A.a.a.a.a.a ENSGT00730000111690.A.a.a.a.a.b ENSGT00940000157195.m ENSGT00730000111690.A.a.b ENSGT00730000111690.A.a.a.a.b.a.b ENSGT00940000157598 ENSGT01030000234567.B.a.b.a.b.a ENSGT00730000111690.A.a.a.a.b.b.a.b.b.b ENSGT00730000111690.A.a.a.a.b.b.a.b.a ENSGT00730000111690.A.a.a.a.b.b.b ENSGT00730000111690.A.a.a.a.b.a.a ENSGT00390000013973.B.g.a ENSGT00730000111057.c Haplochromini ANCESTRAL SPECIES 12 ENSGT00940000163144.a.a.b ENSGT00940000163861.a ENSGT00390000015826 ENSGT00530000064692.A ENSGT01050000244893.c.b.b.b ENSGT00390000007786.a.b ENSGT00940000178935 ENSGT00940000161847.b.a.e.a.b.d.f ENSGT00950000183127.c.b.d.a.a.b.h ENSGT00940000160720.b.b ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333.b ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.b ENSGT01030000235004 ENSGT00730000111690.A.a.a.a.a.a ENSGT00730000111690.A.a.a.a.a.b ENSGT00940000157195.m ENSGT00730000111690.A.a.b ENSGT00730000111690.A.a.a.a.b.a.b ENSGT00940000157598.k ENSGT01030000234567.B.a.b.a.b.a ENSGT00730000111690.A.a.a.a.b.b.a.b.b.b ENSGT00730000111690.A.a.a.a.b.b.a.b.a ENSGT00730000111690.A.a.a.a.b.b.b ENSGT00730000111690.A.a.a.a.b.a.a ENSGT00730000111690.A.a.a.a.b.b.a.a.a ENSGT00390000013973.B.g.a Haplochromini_A ANCESTRAL SPECIES 14 ENSGT00940000167161 ENSGT00940000163144.a.b ENSGT00940000163144.a.a.b ENSGT00940000163861.a ENSGT00390000015826 ENSGT00530000064692.A ENSGT01050000244893.c.b.b.b ENSGT00390000007786.a.b ENSGT00940000178935 ENSGT00940000160720.b.b ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333.b ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.b ENSGT01030000235004 ENSGT00730000111690.A.a.a.a.a.a ENSGT00730000111690.A.a.a.a.a.b ENSGT00940000157195.m ENSGT00730000111690.A.a.b ENSGT00730000111690.A.a.a.a.b.a.b ENSGT00940000157598.k ENSGT01030000234567.B.a.b.a.b.a ENSGT00730000111690.A.a.a.a.b.b.a.b.b.b ENSGT00730000111690.A.a.a.a.b.b.a.b.a ENSGT00730000111690.A.a.a.a.b.b.b ENSGT00730000111690.A.a.a.a.b.a.a ENSGT00730000111690.A.a.a.a.b.b.a.a.a ENSGT00390000013973.B.g.a P. nyererei MODERN SPECIES 354 pvalb5 (ENSPNYG00000016555) pvalb1 (ENSPNYG00000015408) pvalb4 (ENSPNYG00000015133) pvalb8 (ENSPNYG00000015081) aimp2 (ENSPNYG00000015064) ENSPNYG00000015040 cacng4b (ENSPNYG00000015027) CACNG1 (ENSPNYG00000015006) ENSPNYG00000015000 ENSPNYG00000014975 slc25a19 (ENSPNYG00000014951) mif4gda (ENSPNYG00000014934) mrps7 (ENSPNYG00000014800) ENSPNYG00000014743 NUP85 (ENSPNYG00000014689) ENSPNYG00000014660 ##22 jpt1b (ENSPNYG00000014647) ENSPNYG00000014632 ENSPNYG00000014621 ENSPNYG00000014614 ENSPNYG00000014599 septin9a (ENSPNYG00000014571) TNRC6C (ENSPNYG00000014477) ENSPNYG00000014414 ENSPNYG00000014403 ENSPNYG00000014385 ENSPNYG00000014369 ENSPNYG00000014346 znf207a (ENSPNYG00000014312) zgc:153240 (ENSPNYG00000014279) ENSPNYG00000014263 Haplochromini_B ANCESTRAL SPECIES 33 ENSGT00940000167161 ENSGT00940000163144.a.b ENSGT00940000163144.a.a.b ENSGT00940000163861.a ENSGT00390000015826 ENSGT00530000064692.A ENSGT01050000244893.c.b.b.b ENSGT00390000007786.a.b ENSGT00940000178935 ENSGT00940000160720.b.b ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333.b ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.b ENSGT01030000235004 ENSGT00730000111690.A.a.a.a.a.a ENSGT00730000111690.A.a.a.a.a.b ENSGT00940000157195.m ENSGT00730000111690.A.a.b ENSGT00730000111690.A.a.a.a.b.a.b ENSGT00940000157598.k ENSGT01030000234567.B.a.b.a.b.a ENSGT00730000111690.A.a.a.a.b.b.a.b.b.b ENSGT00730000111690.A.a.a.a.b.b.a.b.a ENSGT00730000111690.A.a.a.a.b.b.b ENSGT00730000111690.A.a.a.a.b.a.a ENSGT00730000111690.A.a.a.a.b.b.a.a.a ENSGT00390000013973.B.g.a Zebra mbuna MODERN SPECIES 1107 pvalb1 (ENSMZEG00005013122) pvalb4 (ENSMZEG00005013109) pvalb8 (ENSMZEG00005013094) aimp2 (ENSMZEG00005013087) cacng4b (ENSMZEG00005013081) CACNG1 (ENSMZEG00005013077) ENSMZEG00005013074 ENSMZEG00005013063 slc25a19 (ENSMZEG00005013042) mif4gda (ENSMZEG00005013033) mrps7 (ENSMZEG00005013021) GGA3 (ENSMZEG00005012988) ENSMZEG00005012972 ENSMZEG00005012964 ##22 NUP85 (ENSMZEG00005012951) ENSMZEG00005012945 ##22 jpt1b (ENSMZEG00005012937) ENSMZEG00005012925 ENSMZEG00005012921 ENSMZEG00005012915 ENSMZEG00005012909 ENSMZEG00005012898 septin9a (ENSMZEG00005012865) ENSMZEG00005012839 ENSMZEG00005012828 ENSMZEG00005012823 ENSMZEG00005012818 ENSMZEG00005012810 ENSMZEG00005012699 ENSMZEG00005012667 NACC1 (ENSMZEG00005012639) Burton s mouthbrooder MODERN SPECIES 339 pvalb4 (ENSHBUG00000011464) pvalb8 (ENSHBUG00000011458) aimp2 (ENSHBUG00000011451) ENSHBUG00000000309 cacng4b (ENSHBUG00000011442) CACNG1 (ENSHBUG00000011416) ENSHBUG00000011395 ENSHBUG00000011377 ENSHBUG00000011253 PITPNC1 (ENSHBUG00000011243) slc25a19 (ENSHBUG00000011202) mif4gda (ENSHBUG00000001126) mrps7 (ENSHBUG00000011147) GGA3 (ENSHBUG00000011129) NUP85 (ENSHBUG00000011052) ENSHBUG00000010987 ##22 jpt1b (ENSHBUG00000010960) ENSHBUG00000010931 septin9a (ENSHBUG00000010906) ENSHBUG00000010864 ENSHBUG00000010855 TNRC6C (ENSHBUG00000010846) Atherinomorphae ANCESTRAL SPECIES 20 ENSGT00740000117013.a ENSGT00940000163566.a.b.a.a ENSGT00950000182803.A.a.b.k.a ENSGT00440000038745.a.a.a ENSGT00940000178527 ENSGT00530000063753.A.a ENSGT00530000063753.B.c ENSGT00940000153882.a.a ENSGT00390000007779 ENSGT00410000025739.c.b ENSGT00940000156207.b.c.b ENSGT00940000157016 ENSGT00940000158772.a ENSGT00940000154272.B.a ENSGT00940000157333.a ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.a ENSGT00540000073890 ENSGT00940000157195.n ENSGT00940000167317 ENSGT00530000069385 ENSGT00730000111057.d ENSGT00940000158838 ENSGT00940000155641.g.b ENSGT00940000156498.g.b ENSGT00390000010581 ENSGT00940000153469.a.a.l ENSGT00390000012364.b ENSGT00390000016493 ENSGT00440000033742.a.b.c ENSGT00940000170963 Cyprinodontiformes ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 Cyprinodontoidei ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 NAME_4 ANCESTRAL SPECIES ENSGT00950000182895.a.a.a.b ##22 Sheepshead minnow MODERN SPECIES 1808 ENSCVAG00000008556 ##22 ENSCVAG00000008560 ENSCVAG00000008566 Oryzias ANCESTRAL SPECIES 15 ENSGT00940000165311.b ENSGT00550000074953 ENSGT01020000230360.c.b.a.a.a.a.b.a.a.b.b.f ENSGT00950000183089.c.a.k.a.fb ENSGT00990000203553.c.b.b ENSGT00440000038745.a.a.a ENSGT00530000063753.A.a ENSGT00530000063753.B.c ENSGT00940000153882.a.a ENSGT00390000007779 ENSGT00410000025739.c.b ENSGT00940000157016 ENSGT00940000158772.a ENSGT00940000154272.B.a ENSGT00940000157333.a ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.a ENSGT00540000073890 ENSGT00940000157195.n ENSGT00940000167317 ENSGT00730000111057.d ENSGT00940000158838 ENSGT00940000155641.g.b ENSGT00940000156498.g.b ENSGT00390000010581 ENSGT00940000153469.a.a.l ENSGT00390000012364.b ENSGT00390000016493 ENSGT00440000033742.a.b.c ENSGT00940000154739.A ENSGT00940000166223.b.a Oryzias_b ANCESTRAL SPECIES 29 ENSGT00440000038745.a.a.a ENSGT00530000063753.A.a ENSGT00530000063753.B.c ENSGT00940000153882.a.a ENSGT00390000007779 ENSGT00410000025739.c.b ENSGT00940000157016 ENSGT00940000158772.a ENSGT00940000154272.B.a ENSGT00940000157333.a ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.a ENSGT00540000073890 ENSGT00940000157195.n ENSGT00940000167317 ENSGT00730000111057.d ENSGT00940000158838 ENSGT00940000155641.g.b ENSGT00940000156498.g.b ENSGT00390000010581 ENSGT00940000153469.a.a.l ENSGT00390000012364.b ENSGT00390000016493 ENSGT00440000033742.a.b.c ENSGT00940000154739.A ENSGT00940000166223.b.a Javanese ricefish DUPLICATION Javanese ricefish MODERN SPECIES 14 ENSOJAG00000017528 ENSOJAG00000018438 d2hgdh (ENSOJAG00000018465) acvr1l (ENSOJAG00000018629) otomp (ENSOJAG00000018670) ENSOJAG00000018673 hs6st1b (ENSOJAG00000018694) uggt1 (ENSOJAG00000018799) ENSOJAG00000020238 ola1 (ENSOJAG00000020246) ENSOJAG00000020271 ENSOJAG00000020281 atg9a (ENSOJAG00000020353) ENSOJAG00000020499 ENSOJAG00000020911 #21 ENSOJAG00000020917 ##22 TSPEAR (ENSOJAG00000020927) #24 fabp7a (ENSOJAG00000020941) fyna (ENSOJAG00000021085) marcksb (ENSOJAG00000022130) col10a1a (ENSOJAG00000022137) fhl5 (ENSOJAG00000022144) FUT9 (ENSOJAG00000022150) FUT9 (ENSOJAG00000022166) fut9a (ENSOJAG00000022171) manea (ENSOJAG00000022177) ppp1cb (ENSOJAG00000022192) ENSOJAG00000022226 ypel5 (ENSOJAG00000022232) lclat1 (ENSOJAG00000022239) lbh (ENSOJAG00000022244) Javanese ricefish MODERN SPECIES ENSOJAG00000008505 ENSOJAG00000008466 ENSOJAG00000008458 ENSOJAG00000008440 ENSOJAG00000008421 pik3r6a (ENSOJAG00000008381) PIK3R6 (ENSOJAG00000008366) PIK3R5 (ENSOJAG00000007977) ENSOJAG00000007897 stx8 (ENSOJAG00000007877) ENSOJAG00000007861 cfap52 (ENSOJAG00000007481) usp43a (ENSOJAG00000007309) MCHR1 (ENSOJAG00000007256) gga3a (ENSOJAG00000007034) ENSOJAG00000006946 ##22 jpt1a (ENSOJAG00000006923) ENSOJAG00000006904 septin9b (ENSOJAG00000006510) ENSOJAG00000006216 znf207b (ENSOJAG00000006165) rhbdl3 (ENSOJAG00000006096) rhot1b (ENSOJAG00000004165) ADAP2 (ENSOJAG00000003709) tefm (ENSOJAG00000003672) ENSOJAG00000003629 suz12b (ENSOJAG00000022167) utp6 (ENSOJAG00000022106) rab11fip4b (ENSOJAG00000022062) ENSOJAG00000022052 ENSOJAG00000022047 Otomorpha ANCESTRAL SPECIES 630 ENSGT00940000157333.b ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.b Otophysi ANCESTRAL SPECIES 464 ENSGT00940000157333.b ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.b Cyprinoidei ANCESTRAL SPECIES 117 ENSGT00530000063753.A.a ENSGT00390000007779 ENSGT00410000025739.c.b ENSGT00940000157016 ENSGT00940000158772.a ENSGT00940000154272.B.a ENSGT00940000153432.A.a.j ENSGT00940000157333.a ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.b ENSGT01030000234583.a.a.c.b.a.a.a.b.b.a.a.a.a.a.a.a.a.b.a.a.a.b.a.a ENSGT00390000013965.b.b ENSGT00940000157333.b ENSGT00390000000204.l ENSGT00950000182895.b.b ##22 ENSGT00940000164904.a ENSGT00540000073890 ENSGT00940000157195.n ENSGT00940000167317 ENSGT00940000158838 ENSGT00730000111057.d ENSGT01030000235061 ENSGT00940000155641.g.b ENSGT00390000010581 Cyprininae ANCESTRAL SPECIES 1212 ENSGT00390000000204.l.a ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.b.b Goldfish MODERN SPECIES 46 ENSCARG00000005866 glulb (ENSCARG00000005883) pik3r6a (ENSCARG00000005916) PIK3R6 (ENSCARG00000005931) PIK3R5 (ENSCARG00000005990) ntn1a (ENSCARG00000006543) stx8 (ENSCARG00000006586) ENSCARG00000006638 cfap52 (ENSCARG00000006652) usp43a (ENSCARG00000006762) MCHR1 (ENSCARG00000006772) grb2a (ENSCARG00000006778) mif4gda (ENSCARG00000000169) ENSCARG00000000176 gga3a (ENSCARG00000000431) ENSCARG00000000701 ##22 jpt1a (ENSCARG00000000708) ENSCARG00000000716 ENSCARG00000000729 septin9b (ENSCARG00000000768) ENSCARG00000000881 rhbdl3 (ENSCARG00000000921) znf207b (ENSCARG00000000945) cd7al (ENSCARG00000001028) rhot1b (ENSCARG00000001065) tefm (ENSCARG00000001139) atad5b (ENSCARG00000001148) suz12b (ENSCARG00000001174) rab11fip4b (ENSCARG00000001234) trim25 (ENSCARG00000001262) dgke (ENSCARG00000001313) Cyprininae_a ANCESTRAL SPECIES 527 ENSGT00390000013973.A.a.c.a.g.a.a.b ENSGT00940000157333.b.d ENSGT00390000000204.k ENSGT00390000000204.l.a ENSGT00950000182895.a.a.a.b ##22 ENSGT00940000164904.b.b ENSGT00940000163472.i.a.b.b.a.a.b.b.b.a.a.a.a.a.a.a.b ENSGT01030000234583.a.a.c.b.a.a.a.b.b.a.a.a.a.a.a.a.a.b.a.a.a.b.a.a.b.a.a.a.b ENSGT01080000257462.a.b.a.a.b ENSGT00940000154395.a.a.b.a.p.a ENSGT00940000154395.a.a.b.a.o ENSGT01030000234583.a.a.c.b.a.a.a.b.b.a.a.a.a.a.a.a.a.b.a.a.a.b.a.a.a.b.a.b ENSGT01030000234583.a.a.c.b.a.a.a.b.b.a.a.a.a.a.a.a.a.b.a.a.a.b.a.a.a.b.b Common carp reference MODERN SPECIES 3 trir (ENSCCRG00000078765) ENSCCRG00000011830 rtbdn (ENSCCRG00000064399) ENSCCRG00000068486 ENSCCRG00000015372 ENSCCRG00000008062 ENSCCRG00000071932 ENSCCRG00000080883 ENSCCRG00000064089 ENSCCRG00000052105 ENSCCRG00000045393 cygb1 (ENSCCRG00000082133) ENSCCRG00000062212 ENSCCRG00000037932 ENSCCRG00000038117 ENSCCRG00000038141 ##22 jpt1b (ENSCCRG00000072501) zgc:136767 (ENSCCRG00000062575) ENSCCRG00000001294 ENSCCRG00000066484 ENSCCRG00000077460 ENSCCRG00000057557 ENSCCRG00000072506 ENSCCRG00000038874 ENSCCRG00000076314 ENSCCRG00000077277 ENSCCRG00000078229 ENSCCRG00000001362 ENSCCRG00000072159 ENSCCRG00000078660 PCTP (ENSCCRG00000071593) Golden-line barbel MODERN SPECIES 982 ENSSGRG00000006567 rnf185 (ENSSGRG00000006571) mbd2 (ENSSGRG00000006575) dcc (ENSSGRG00000006580) ENSSGRG00000006583 ENSSGRG00000006586 ##22 jpt1b (ENSSGRG00000006587) ENSSGRG00000006591 ENSSGRG00000006593 ENSSGRG00000006594 ENSSGRG00000006595 ENSSGRG00000006596 ftr72 (ENSSGRG00000006598) ENSSGRG00000006602 ENSSGRG00000006663 ENSSGRG00000006667 ENSSGRG00000006668 Euteleostomi ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Actinopterygii ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Neopterygii ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Osteoglossocephalai ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Clupeocephala ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Euteleosteomorpha ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Acanthomorphata ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Euacanthomorphacea ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Percomorphaceae ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Percomorphaceae_B ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Percomorphaceae_C ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Eupercaria ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Eupecaria_A ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Ballan wrasse MODERN SPECIES 4081 ENSLBEG00000005788 #21 ENSLBEG00000005816 ##22 Ovalentaria ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Atherinomorphae ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Cyprinodontiformes ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Cyprinodontoidei ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Poeciliinae ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Platyfish MODERN SPECIES 21 COL6A2 (ENSXMAG00000015599) MARCHF9 (ENSXMAG00000021114) SMARCAL1 (ENSXMAG00000015575) nme9 (ENSXMAG00000015556) zgc:162707 (ENSXMAG00000022603) ehhadh (ENSXMAG00000021635) tmem41aa (ENSXMAG00000015534) igf2bp2a (ENSXMAG00000015507) tra2b (ENSXMAG00000001784) ENSXMAG00000015483 ENSXMAG00000015480 ENSXMAG00000015465 glb1l (ENSXMAG00000015413) ENSXMAG00000015372 ENSXMAG00000015370 #21 ENSXMAG00000015367 ##22 FMNL2 (ENSXMAG00000015332) prpf40a (ENSXMAG00000015299) rprmb (ENSXMAG00000019655) GALNT13 (ENSXMAG00000011252) KCNJ3 (ENSXMAG00000011278) nr4a2a (ENSXMAG00000011280) ENSXMAG00000027696 GALNT5 (ENSXMAG00000011292) ENSXMAG00000029453 CYTIP (ENSXMAG00000011296) ACVR1C (ENSXMAG00000011304) ENSXMAG00000011317 ENSXMAG00000011346 upp2 (ENSXMAG00000011348) CCDC148 (ENSXMAG00000011360) Protacanthopterygii ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Salmoninae ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Huchen MODERN SPECIES 11446 ENSHHUG00000015730 ##22 Salmoninae_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Oncorhynchus ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Oncorhynchus_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Chinook salmon MODERN SPECIES 19 ENSOTSG00005016391 ENSOTSG00005016389 ENSOTSG00005016388 ENSOTSG00005016386 ndufb10 (ENSOTSG00005016385) ndufb10 (ENSOTSG00005016383) RPL3L (ENSOTSG00005016377) rps2 (ENSOTSG00005016375) RNF151 (ENSOTSG00005016365) tbl3 (ENSOTSG00005014807) noxo1a (ENSOTSG00005014805) GID4 (ENSOTSG00005014804) drc3 (ENSOTSG00005014802) TOM1L2 (ENSOTSG00005014787) srebf1 (ENSOTSG00005014784) ENSOTSG00005014783 ##22 ENSOTSG00005014782 ##22 GGA3 (ENSOTSG00005014572) mrps7 (ENSOTSG00005014567) MIF4GD (ENSOTSG00005014564) slc25a19 (ENSOTSG00005014559) ENSOTSG00005014558 ENSOTSG00005014557 ENSOTSG00005014556 ATG4D (ENSOTSG00005014555) MAST1 (ENSOTSG00005013712) rtbdn (ENSOTSG00005013711) ENSOTSG00005013710 junbb (ENSOTSG00005013709) ENSOTSG00005013708 HOOK2 (ENSOTSG00005013561) Sarcopterygii ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Tetrapoda ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Amniota ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Sauria ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Archelosauria ANCESTRAL SPECIES 19 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00940000155335 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b Archosauria ANCESTRAL SPECIES 12 ENSGT00940000157800 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b Aves ANCESTRAL SPECIES 17 ENSGT00940000157800 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b Neognathae ANCESTRAL SPECIES 17 ENSGT00940000157800 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Neognathae_b ANCESTRAL SPECIES 19 ENSGT00940000157800 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Passeriformes ANCESTRAL SPECIES 17 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158025.b ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.b #22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Passeriformes_d ANCESTRAL SPECIES 17 ENSGT00940000157800 ENSGT00940000170136 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.b #22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Passeriformes_g ANCESTRAL SPECIES 20 ENSGT00390000007870.g.a ENSGT00940000157800 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 Medium ground finch MODERN SPECIES 73 ITGB4 (ENSGFOG00000008281) SAP30BP (ENSGFOG00000008328) RECQL5 (ENSGFOG00000008340) ENSGFOG00000008351 LLGL2 (ENSGFOG00000008365) TSEN54 (ENSGFOG00000008392) MCHR1 (ENSGFOG00000008402) CASKIN2 (ENSGFOG00000008411) TMEM94 (ENSGFOG00000008472) GRB2 (ENSGFOG00000008751) SLC25A19 (ENSGFOG00000008758) MIF4GD (ENSGFOG00000008762) MRPS7 (ENSGFOG00000008769) GGA3 (ENSGFOG00000008773) NUP85 (ENSGFOG00000008801) ENSGFOG00000008933 ##22 JPT1 (ENSGFOG00000008938) NT5C (ENSGFOG00000008945) ENSGFOG00000008949 SLC16A5 (ENSGFOG00000008952) ENSGFOG00000008960 ATP5PD (ENSGFOG00000008970) ENSGFOG00000008972 ENSGFOG00000008980 CDR2L (ENSGFOG00000009006) HID1 (ENSGFOG00000009027) ENSGFOG00000009548 OTOP2 (ENSGFOG00000009561) USH1G (ENSGFOG00000009674) FADS6 (ENSGFOG00000003828) FDXR (ENSGFOG00000004038) Passeroidea ANCESTRAL SPECIES 19 ENSGT00520000062027 ENSGT00390000007870.g.a ENSGT00940000157800 ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000168469 ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Common canary MODERN SPECIES 27 SMIM5 (ENSSCAG00000001569) RECQL5 (ENSSCAG00000001555) ENSSCAG00000001437 LLGL2 (ENSSCAG00000001376) TSEN54 (ENSSCAG00000001355) MCHR1 (ENSSCAG00000001349) ENSSCAG00000001325 TMEM94 (ENSSCAG00000000994) GRB2 (ENSSCAG00000000906) SLC25A19 (ENSSCAG00000000899) MIF4GD (ENSSCAG00000000886) MRPS7 (ENSSCAG00000000881) GGA3 (ENSSCAG00000000827) NUP85 (ENSSCAG00000000676) ENSSCAG00000000631 ##22 ENSSCAG00000000624 ##22 JPT1 (ENSSCAG00000000609) NT5C (ENSSCAG00000000603) ENSSCAG00000000595 SLC16A5 (ENSSCAG00000000589) KCTD2 (ENSSCAG00000000581) ATP5PD (ENSSCAG00000000575) MRPL58 (ENSSCAG00000000571) CDR2L (ENSSCAG00000000566) HID1 (ENSSCAG00000000556) OTOP3 (ENSSCAG00000000551) OTOP2 (ENSSCAG00000000544) USH1G (ENSSCAG00000000538) FADS6 (ENSSCAG00000000509) ENSSCAG00000000501 ENSSCAG00000000498 Galloanserae ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Phasianidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Phasianidae_b ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Turkey MODERN SPECIES 2 ENSMGAG00000004159 ENSMGAG00000015976 ENSMGAG00000015981 ENSMGAG00000004132 ENSMGAG00000018744 ENSMGAG00000017503 ENSMGAG00000015969 ENSMGAG00000015973 ENSMGAG00000004099 ENSMGAG00000022392 ENSMGAG00000015964 ENSMGAG00000004086 ENSMGAG00000003942 #24 ENSMGAG00000003954 #25 UBE2G2 (ENSMGAG00000003925) #23 ENSMGAG00000021895 ##22 ENSMGAG00000003911 #21 ENSMGAG00000003486 #20 ENSMGAG00000017636 #19 BOK (ENSMGAG00000003450) #18 ENSMGAG00000003781 #16 ENSMGAG00000003869 #17 SEPTIN2 (ENSMGAG00000003759) #15 ENSMGAG00000003686 #14 ENSMGAG00000003650 #12 ENSMGAG00000003607 #11 ENSMGAG00000003584 #9 ENSMGAG00000008664 ENSMGAG00000008634 #7 ENSMGAG00000008597 ENSMGAG00000003460 Anatidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Duck MODERN SPECIES 2195 ENSAPLG00000030836 ##22 Cryptodira ANCESTRAL SPECIES 21 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000154272.B ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.a.a.a.a.a.a ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582 ENSGT00940000163471 ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b Testudinoidea ANCESTRAL SPECIES 14 ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00950000182895.a.a.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582.`b.a ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b Emydidae ANCESTRAL SPECIES 17 ENSGT00390000007870 ENSGT00940000157800 ENSGT00520000062027 ENSGT00930000151032.B ENSGT00950000182906.a.a.b ENSGT00390000004214 ENSGT00940000158256 ENSGT00390000016550 ENSGT00940000155738 ENSGT00550000074902 ENSGT00940000153432.A.a ENSGT00390000014620 ENSGT00940000157333 ENSGT00390000000204 ENSGT00950000182895.a.a.a.b ##22 ENSGT00950000182895.a.a.b ##22 ENSGT00940000162422 ENSGT00390000011596.b ENSGT00940000164193 ENSGT00940000159666 ENSGT00940000162951.a ENSGT00940000158336 ENSGT00390000003582.`b.a ENSGT00390000013268 ENSGT00390000018570.b ENSGT00390000003070 ENSGT00940000160638 ENSGT00940000156691 ENSGT00390000017548.b ENSGT00950000182990.b ENSGT00390000013574 painted turtle MODERN SPECIES 2409 RECQL5 (ENSCPBG00000028060) SMIM5 (ENSCPBG00000028063) ENSCPBG00000028064 LLGL2 (ENSCPBG00000028068) TSEN54 (ENSCPBG00000028071) ENSCPBG00000028077 CASKIN2 (ENSCPBG00000028080) TMEM94 (ENSCPBG00000028092) GRB2 (ENSCPBG00000028101) SLC25A19 (ENSCPBG00000028103) MIF4GD (ENSCPBG00000028104) MRPS7 (ENSCPBG00000028105) GGA3 (ENSCPBG00000028108) NUP85 (ENSCPBG00000028114) ENSCPBG00000028117 ##22 ENSCPBG00000028119 ##22 JPT1 (ENSCPBG00000028120) NT5C (ENSCPBG00000028121) ENSCPBG00000028122 SLC16A5 (ENSCPBG00000028124) ENSCPBG00000028129 KCTD2 (ENSCPBG00000028133) ENSCPBG00000028136 ENSCPBG00000028137 ENSCPBG00000028140 MRPL58 (ENSCPBG00000028141) CDR2L (ENSCPBG00000028143) HID1 (ENSCPBG00000028144) OTOP3 (ENSCPBG00000028148) OTOP2 (ENSCPBG00000028150) USH1G (ENSCPBG00000028153) Lepidosauria ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Episquamata ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Toxicofera ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Elapidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Elapidae_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Blue-lipped sea krait MODERN SPECIES 10308 ENSLLTG00000010518 ##22 JPT1 (ENSLLTG00000010496) NT5C (ENSLLTG00000010483) Mammalia ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Theria ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Eutheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Boreoeutheria ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Euarchontoglires ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Primates ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Haplorrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Simiiformes ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Catarrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Hominoidea ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Hominidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Orangutan MODERN SPECIES 20 OR2F1 (ENSPPYG00000038166) ENSPPYG00000034590 OR6B1 (ENSPPYG00000018130) OR2A25 (ENSPPYG00000018132) ENSPPYG00000032294 OR2A2 (ENSPPYG00000030821) OR2A14 (ENSPPYG00000018133) ENSPPYG00000033303 ENSPPYG00000040515 ENSPPYG00000032909 ENSPPYG00000031373 ARHGEF5 (ENSPPYG00000018137) NOBOX (ENSPPYG00000018138) TPK1 (ENSPPYG00000018139) ENSPPYG00000036274 ENSPPYG00000041230 ##22 CNTNAP2 (ENSPPYG00000018144) C7orf33 (ENSPPYG00000018145) CUL1 (ENSPPYG00000018146) EZH2 (ENSPPYG00000018147) PDIA4 (ENSPPYG00000040520) ZNF786 (ENSPPYG00000018149) ZNF425 (ENSPPYG00000030790) ZNF398 (ENSPPYG00000018150) ZNF282 (ENSPPYG00000018152) ZNF783 (ENSPPYG00000018153) ENSPPYG00000036437 ENSPPYG00000034161 ZNF777 (ENSPPYG00000018155) ZNF746 (ENSPPYG00000035963) KRBA1 (ENSPPYG00000018157) Platyrrhini ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Cebidae ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Cebidae_a ANCESTRAL SPECIES ENSGT00950000182895.a.a.b ##22 Bolivian squirrel monkey MODERN SPECIES 4 ENSSBOG00000009152 ##22