Mus	ANCESTRAL SPECIES	15	ENSGT00950000183170.b.b	ENSGT00940000156322	ENSGT00390000011570 #7	ENSGT00520000055666.b #8	ENSGT00390000005581.a #9	ENSGT00940000155682 #10	ENSGT00940000162889 #11	ENSGT00940000162185 #12	ENSGT00950000183022.b #14	ENSGT00940000158212.B #15	ENSGT00390000007989 #17	ENSGT00940000155992 #18	ENSGT00390000015709 #19	ENSGT01090000259987.a.a.a.c #20	ENSGT00390000004977 #21	ENSGT00950000182895.a.b.j #22	ENSGT00940000158193 #23	ENSGT00510000047718 #33	ENSGT00940000155183.e.d.a #32	ENSGT00940000155183.f.a ##32	ENSGT00940000155183.e.c #30	ENSGT00940000161526.b.r.b.b #28	ENSGT00940000154360.A.b #34	ENSGT00940000156404 #35	ENSGT00390000018807 #36	ENSGT00940000159292 #37	ENSGT00940000161104	ENSGT00940000162228	ENSGT00940000161590	ENSGT00390000003706.a.a	ENSGT00550000074981
Mus_A	ANCESTRAL SPECIES	11	ENSGT00940000156322	ENSGT00390000011570 #7	ENSGT00520000055666.b #8	ENSGT00390000005581.a #9	ENSGT00940000155682 #10	ENSGT00940000162889 #11	ENSGT00940000162185 #12	ENSGT00900000143399 #13	ENSGT00950000183022.b #14	ENSGT00940000158212.B #15	ENSGT00390000007989 #17	ENSGT00940000155992 #18	ENSGT00390000015709 #19	ENSGT01090000259987.a.a.a.c #20	ENSGT00390000004977 #21	ENSGT00950000182895.a.b.j #22	ENSGT00940000158193 #23	ENSGT00510000047718 #33	ENSGT00940000155183.e.c.b.b.a ##32	ENSGT00940000155183.e.c.b.a #29	ENSGT00940000154360.A.b #34	ENSGT00940000156404 #35	ENSGT00390000018807 #36	ENSGT00940000159292 #37	ENSGT00940000161104	ENSGT00940000162228	ENSGT00940000161590	ENSGT00390000003706.a.a	ENSGT00550000074981	ENSGT00390000003873	ENSGT00950000182836.b.b.b.a
Ryukyu mouse	MODERN SPECIES	1	Lss (MGP_CAROLIEiJ_G0015470) #7	Spatc1l (MGP_CAROLIEiJ_G0015471) #8	Ftcd (MGP_CAROLIEiJ_G0015472) #9	Col6a2 (MGP_CAROLIEiJ_G0015473) #10	Col6a1 (MGP_CAROLIEiJ_G0015474) #11	Pcbp3 (MGP_CAROLIEiJ_G0015475) #12	MGP_CAROLIEiJ_G0015476 #13	Slc19a1 (MGP_CAROLIEiJ_G0015477) #14	Col18a1 (MGP_CAROLIEiJ_G0015478) #15	MGP_CAROLIEiJ_G0015479 #16	Pofut2 (MGP_CAROLIEiJ_G0015480) #17	Adarb1 (MGP_CAROLIEiJ_G0015481) #18	Fam207a (MGP_CAROLIEiJ_G0015482) #19	Itgb2 (MGP_CAROLIEiJ_G0015483) #20	Pttg1ip (MGP_CAROLIEiJ_G0015484) #21	Sumo3 (MGP_CAROLIEiJ_G0015485) #22	Ube2g2 (MGP_CAROLIEiJ_G0015486) #23	Gm10272 (MGP_CAROLIEiJ_G0015487) #24	Gm10024 (MGP_CAROLIEiJ_G0015488) #25	Gm10142 (MGP_CAROLIEiJ_G0015489) #26	Krtap12-1 (MGP_CAROLIEiJ_G0015490) #27	Gm10100 (MGP_CAROLIEiJ_G0015491) #28	MGP_CAROLIEiJ_G0015492 #29	Gm19668 (MGP_CAROLIEiJ_G0015493) #30	MGP_CAROLIEiJ_G0015494 #31	Krtap10-10 (MGP_CAROLIEiJ_G0015495) #32	Tspear (MGP_CAROLIEiJ_G0015496) #33	Lrrc3 (MGP_CAROLIEiJ_G0015497) #34	MGP_CAROLIEiJ_G0015498 #35	Cfap410 (MGP_CAROLIEiJ_G0015499) #36	Pfkl (MGP_CAROLIEiJ_G0015500) #37
Mus_B	ANCESTRAL SPECIES	10	ENSGT00940000156322	ENSGT00390000011570 #7	ENSGT00520000055666.b #8	ENSGT00390000005581.a #9	ENSGT00940000155682 #10	ENSGT00940000162889 #11	ENSGT00940000162185 #12	ENSGT00900000143399 #13	ENSGT00950000183022.b #14	ENSGT00940000158212.B #15	ENSGT00390000007989 #17	ENSGT00940000155992 #18	ENSGT00390000015709 #19	ENSGT01090000259987.a.a.a.c #20	ENSGT00390000004977 #21	ENSGT00950000182895.a.b.j #22	ENSGT00940000158193 #23	ENSGT00510000047718 #33	ENSGT00940000154360.A.b #34	ENSGT00940000156404 #35	ENSGT00390000018807 #36	ENSGT00940000159292 #37	ENSGT00940000161104	ENSGT00940000162228	ENSGT00940000161590	ENSGT00390000003706.a.a	ENSGT00550000074981	ENSGT00390000003873	ENSGT00950000182836.b.b.b.a	ENSGT01050000248522	ENSGT00390000011821.b
Mouse	MODERN SPECIES	1	Ybey (ENSMUSG00000033126)	Mcm3ap (ENSMUSG00000001150)	Lss (ENSMUSG00000033105) #7	Spatc1l (ENSMUSG00000009115) #8	Ftcd (ENSMUSG00000001155) #9	Col6a2 (ENSMUSG00000020241) #10	Col6a1 (ENSMUSG00000001119) #11	Pcbp3 (ENSMUSG00000001120) #12	Slc19a1 (ENSMUSG00000001436) #14	Col18a1 (ENSMUSG00000001435) #15	Pofut2 (ENSMUSG00000020260) #17	Adarb1 (ENSMUSG00000020262) #18	Fam207a (ENSMUSG00000032977) #19	Itgb2 (ENSMUSG00000000290) #20	Pttg1ip (ENSMUSG00000009291) #21	Sumo3 (ENSMUSG00000020265) #22	Ube2g2 (ENSMUSG00000009293) #23	Tspear (ENSMUSG00000069581) #33	Gm19402 (ENSMUSG00000095970) ##32	Gm9508 (ENSMUSG00000112170) #29	Gm10272 (ENSMUSG00000069584) #24	Gm10024 (ENSMUSG00000094012) #25	Gm10142 (ENSMUSG00000094146) #26	Krtap12-1 (ENSMUSG00000069583) #27	Gm10100 (ENSMUSG00000096421) #28	Gm18596 (ENSMUSG00000112864) ##32	Gm9736 (ENSMUSG00000112380) ##32	Gm3233 (ENSMUSG00000094120) ##32	Gm3238 (ENSMUSG00000095817) ##32	Gm7138 (ENSMUSG00000095593) ##32	Gm3250 (ENSMUSG00000096481) ##32
Mus_C	ANCESTRAL SPECIES	7	ENSGT00940000156322	ENSGT00390000011570 #7	ENSGT00520000055666.b #8	ENSGT00390000005581.a #9	ENSGT00940000155682 #10	ENSGT00940000162889 #11	ENSGT00940000162185 #12	ENSGT00900000143399 #13	ENSGT00950000183022.b #14	ENSGT00940000158212.B #15	ENSGT00390000007989 #17	ENSGT00940000155992 #18	ENSGT00390000015709 #19	ENSGT01090000259987.a.a.a.c #20	ENSGT00390000004977 #21	ENSGT00950000182895.a.b.j #22	ENSGT00940000158193 #23	ENSGT00940000155183.f.b.a ##32	ENSGT00940000161526.b.r.a #24	ENSGT00940000161526.b.r.b.a.b.b #25	ENSGT00940000161526.b.r.b.a.a #26	ENSGT00940000161526.b.r.b.a.b.a #27	ENSGT00940000161526.b.r.b.b #28	ENSGT00940000155183.e.c.b.b.b #30	ENSGT00940000155183.f.a ##32	ENSGT00940000155183.e.d.a.b ##32	ENSGT00510000047718 #33	ENSGT00940000155183.e.c.b.a #29	ENSGT00940000154360.A.b #34	ENSGT00940000156404 #35	ENSGT00390000018807 #36
spretus	MODERN SPECIES	1	Lss (MGP_SPRETEiJ_G0016283) #7	Spatc1l (MGP_SPRETEiJ_G0016284) #8	Ftcd (MGP_SPRETEiJ_G0016285) #9	Col6a2 (MGP_SPRETEiJ_G0016286) #10	Col6a1 (MGP_SPRETEiJ_G0016287) #11	Pcbp3 (MGP_SPRETEiJ_G0016288) #12	MGP_SPRETEiJ_G0016289 #13	Slc19a1 (MGP_SPRETEiJ_G0016290) #14	Col18a1 (MGP_SPRETEiJ_G0016291) #15	MGP_SPRETEiJ_G0016292	Pofut2 (MGP_SPRETEiJ_G0016293) #17	Adarb1 (MGP_SPRETEiJ_G0016294) #18	Fam207a (MGP_SPRETEiJ_G0016295) #19	Itgb2 (MGP_SPRETEiJ_G0016296) #20	Pttg1ip (MGP_SPRETEiJ_G0016297) #21	Sumo3 (MGP_SPRETEiJ_G0016298) #22	Ube2g2 (MGP_SPRETEiJ_G0016299) #23	MGP_SPRETEiJ_G0016300 ##32	Gm10272 (MGP_SPRETEiJ_G0016301) #24	Gm10024 (MGP_SPRETEiJ_G0016302) #25	Gm10142 (MGP_SPRETEiJ_G0016303) #26	Krtap12-1 (MGP_SPRETEiJ_G0016304) #27	Gm10100 (MGP_SPRETEiJ_G0016305) #28	Gm19668 (MGP_SPRETEiJ_G0016306) #30	MGP_SPRETEiJ_G0016307 ##32	Tspear (MGP_SPRETEiJ_G0016308) #33	MGP_SPRETEiJ_G0016309 #29	Lrrc3 (MGP_SPRETEiJ_G0016310) #34	Trpm2 (MGP_SPRETEiJ_G0016311) #35	Cfap410 (MGP_SPRETEiJ_G0016312) #36	Pfkl (MGP_SPRETEiJ_G0016313) #37
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	3135	Recql5 (ENSMSIG00000028015)	Smim6 (ENSMSIG00000028032)	Smim5 (ENSMSIG00000028034)	Myo15b (ENSMSIG00000028039)	Llgl2 (ENSMSIG00000028102)	Tsen54 (ENSMSIG00000028141)	Caskin2 (ENSMSIG00000028161)	Tmem94 (ENSMSIG00000028168)	ENSMSIG00000028209	Grb2 (ENSMSIG00000028212)	Slc25a19 (ENSMSIG00000028240)	Mif4gd (ENSMSIG00000028258)	Mrps7 (ENSMSIG00000028269)	Gga3 (ENSMSIG00000028278)	Nup85 (ENSMSIG00000028322)	ENSMSIG00000028342 #22	Jpt1 (ENSMSIG00000028349)	Armc7 (ENSMSIG00000028366)	Nt5c (ENSMSIG00000028372)	Slc16a5 (ENSMSIG00000028378)	Trim80 (ENSMSIG00000028383)	ENSMSIG00000028388	ENSMSIG00000028398	Mrpl58 (ENSMSIG00000028407)	Cdr2l (ENSMSIG00000028417)	Hid1 (ENSMSIG00000028424)	Otop3 (ENSMSIG00000028450)	Otop2 (ENSMSIG00000028457)	Ush1g (ENSMSIG00000028465)	Fads6 (ENSMSIG00000028470)	Fdxr (ENSMSIG00000028471)
Steppe mouse	MODERN SPECIES	2060															ENSMSIG00000018269 #21	ENSMSIG00000018250 #22	ENSMSIG00000018221 #23	ENSMSIG00000018206	ENSMSIG00000018197 ##32	Gm9508 (ENSMSIG00000018192) #29	Gm10272 (ENSMSIG00000018187) #24	Gm10024 (ENSMSIG00000018183) #25	Gm10142 (ENSMSIG00000018177) #26	Krtap12-1 (ENSMSIG00000018172) #27	Gm10100 (ENSMSIG00000018166) #28	ENSMSIG00000018163 ##28
Shrew mouse	MODERN SPECIES	22	Mcm3ap (MGP_PahariEiJ_G0030883)	Lss (MGP_PahariEiJ_G0030884) #7	Spatc1l (MGP_PahariEiJ_G0030885) #8	Ftcd (MGP_PahariEiJ_G0030886) #9	Col6a2 (MGP_PahariEiJ_G0030887) #10	Col6a1 (MGP_PahariEiJ_G0030888) #11	Pcbp3 (MGP_PahariEiJ_G0030889) #12	MGP_PahariEiJ_G0030890	Slc19a1 (MGP_PahariEiJ_G0030891) #14	Col18a1 (MGP_PahariEiJ_G0030892) #15	Pofut2 (MGP_PahariEiJ_G0030893) #17	Adarb1 (MGP_PahariEiJ_G0030894) #18	Fam207a (MGP_PahariEiJ_G0030895) #19	Itgb2 (MGP_PahariEiJ_G0030896) #20	Pttg1ip (MGP_PahariEiJ_G0030897) #21	Sumo3 (MGP_PahariEiJ_G0030898) #22	Ube2g2 (MGP_PahariEiJ_G0030899) #23	MGP_PahariEiJ_G0030900 ##32	Gm10272 (MGP_PahariEiJ_G0030901) #24	MGP_PahariEiJ_G0030902 #26	MGP_PahariEiJ_G0030903 #26	Krtap12-1 (MGP_PahariEiJ_G0030904) #27	MGP_PahariEiJ_G0030905 ##28	MGP_PahariEiJ_G0030906 ##32	MGP_PahariEiJ_G0030907 ##32	MGP_PahariEiJ_G0030908 #31	Tspear (MGP_PahariEiJ_G0030909) #33	Lrrc3 (MGP_PahariEiJ_G0030910) #34	MGP_PahariEiJ_G0030911 #35	Cfap410 (MGP_PahariEiJ_G0030912) #36	Pfkl (MGP_PahariEiJ_G0030913) #37