Rodentia	ANCESTRAL SPECIES	8	ENSGT00390000005715	ENSGT00940000160432 #7	ENSGT00940000159573 #8	ENSGT00390000008295.a #9	ENSGT00390000005075 #10	ENSGT00550000074901 #11	ENSGT00940000159757 #12	ENSGT00940000160687 #13	ENSGT00940000161650 #14	ENSGT00940000159836 #15	ENSGT00390000017697.b #16	ENSGT00940000164375 #19	ENSGT00940000153793 #17	ENSGT00940000155200 #20	ENSGT00940000162924 #21	ENSGT00390000018132.j #22	ENSGT00940000153528.a.b.a.a #23	ENSGT00940000162243 #24	ENSGT00390000002016 #25	ENSGT00420000029943 #26	ENSGT00940000158063 #27	ENSGT00510000049353 #28	ENSGT00390000004417.b #29	ENSGT01030000234613.a.b #30	ENSGT00940000156252 #31	ENSGT00940000159455 #32	ENSGT00940000160637 #33	ENSGT00900000143253 #34	ENSGT00390000008139 #35	ENSGT00940000160212 #36	ENSGT00940000159190 #37
Rodentia_B	ANCESTRAL SPECIES	21	ENSGT00390000005715	ENSGT00940000160432 #7	ENSGT00940000159573 #8	ENSGT00390000008295.a #9	ENSGT00390000005075 #10	ENSGT00550000074901 #11	ENSGT00940000159757 #12	ENSGT00940000160687 #13	ENSGT00940000161650 #14	ENSGT00940000159836 #15	ENSGT00390000017697.b #16	ENSGT00940000153793 #17	ENSGT00940000164375 #19	ENSGT00940000155200 #20	ENSGT00940000162924 #21	ENSGT00390000018132.j #22	ENSGT00940000153528.a.b.a.a #23	ENSGT00940000162243 #24	ENSGT00390000002016 #25	ENSGT00420000029943 #26	ENSGT00940000158063 #27	ENSGT00510000049353 #28	ENSGT00390000004417.b #29	ENSGT01030000234613.a.b #30	ENSGT00940000156252 #31	ENSGT00940000159455 #32	ENSGT00940000160637 #33	ENSGT00900000143253 #34	ENSGT00390000008139 #35	ENSGT00940000160212 #36	ENSGT00940000159190 #37
Myomorpha	ANCESTRAL SPECIES	22	ENSGT00940000160432 #7	ENSGT00940000159573 #8	ENSGT00390000008295.a #9	ENSGT00390000005075 #10	ENSGT00550000074901 #11	ENSGT00940000159757 #12	ENSGT00940000160687 #13	ENSGT00940000161650 #14	ENSGT00940000159836 #15	ENSGT00390000017697.b #16	ENSGT00940000153793.g ##17	ENSGT00940000153793.h #17	ENSGT00940000164375 #19	ENSGT00940000155200 #20	ENSGT00940000162924 #21	ENSGT00390000018132.j #22	ENSGT00940000153528.a.b.a.a #23	ENSGT00940000162243 #24	ENSGT00390000002016 #25	ENSGT00420000029943 #26	ENSGT00940000158063 #27	ENSGT00510000049353 #28	ENSGT00390000004417.b #29	ENSGT01030000234613.a.b #30	ENSGT00940000156252 #31	ENSGT00940000159455 #32	ENSGT00940000160637 #33	ENSGT00900000143253 #34	ENSGT00390000008139 #35	ENSGT00940000160212 #36	ENSGT00940000159190 #37
Muroidea	ANCESTRAL SPECIES	19	ENSGT00940000160432 #7	ENSGT00940000159573 #8	ENSGT00390000008295.a #9	ENSGT00390000005075 #10	ENSGT00550000074901 #11	ENSGT00940000159757 #12	ENSGT00940000160687 #13	ENSGT00940000161650 #14	ENSGT00940000159836 #15	ENSGT00390000017697.b #16	ENSGT00940000153793.g ##17	ENSGT00940000164375 #19	ENSGT00940000153793.h #17	ENSGT00940000155200 #20	ENSGT00940000162924 #21	ENSGT00390000018132.j #22	ENSGT00940000153528.a.b.a.a #23	ENSGT00940000162243 #24	ENSGT00390000002016 #25	ENSGT00420000029943 #26	ENSGT00940000158063 #27	ENSGT00510000049353 #28	ENSGT00390000004417.b #29	ENSGT01030000234613.a.b #30	ENSGT00940000156252 #31	ENSGT00940000159455 #32	ENSGT00940000160637 #33	ENSGT00900000143253 #34	ENSGT00390000008139 #35	ENSGT00940000160212 #36	ENSGT00940000159190 #37
Muroidea_A	ANCESTRAL SPECIES	16	ENSGT00940000159573 #8	ENSGT00390000008295.a #9	ENSGT00390000005075 #10	ENSGT00550000074901 #11	ENSGT00940000159757 #12	ENSGT00940000160687 #13	ENSGT00940000161650 #14	ENSGT00940000159836 #15	ENSGT00390000017697.b #16	ENSGT00940000153793.h.c.a.b.a ##17	ENSGT00940000153793.h.c.a.b.b #18	ENSGT00940000153793.h.c.a.a.a ##17	ENSGT00940000164375 #19	ENSGT00940000155200 #20	ENSGT00940000162924 #21	ENSGT00390000018132.j #22	ENSGT00940000153528.a.b.a.a #23	ENSGT00940000162243 #24	ENSGT00390000002016 #25	ENSGT00420000029943 #26	ENSGT00940000158063 #27	ENSGT00510000049353 #28	ENSGT00390000004417.b #29	ENSGT01030000234613.a.b #30	ENSGT00940000156252 #31	ENSGT00940000159455 #32	ENSGT00940000160637 #33	ENSGT00900000143253 #34	ENSGT00390000008139 #35	ENSGT00940000160212 #36	ENSGT00940000159190 #37
Cricetidae	ANCESTRAL SPECIES	7	ENSGT00940000159757 #12	ENSGT00940000160687 #13	ENSGT00940000161650 #14	ENSGT00940000159836 #15	ENSGT00390000017697.b #16	ENSGT00940000153793.g ##17	ENSGT00940000153793.h.c.a.a.b.a.b #17	ENSGT00940000153793.h.c.a.a.b.a.a ##17	ENSGT00940000153793.h.c.a.a.a.c.a ##17	ENSGT00940000153793.h.c.a.b.a ##17	ENSGT00940000153793.h.c.a.b.b #18	ENSGT00940000153793.h.c.a.a.a.d ##17	ENSGT00940000164375 #19	ENSGT00940000155200 #20	ENSGT00940000162924 #21	ENSGT00390000018132.j #22	ENSGT00940000153528.a.b.a.a #23	ENSGT00940000162243 #24	ENSGT00390000002016 #25	ENSGT00420000029943 #26	ENSGT00940000158063 #27	ENSGT00510000049353 #28	ENSGT00390000004417.b #29	ENSGT01030000234613.a.b #30	ENSGT00940000156252 #31	ENSGT00940000159455 #32	ENSGT00940000160637 #33	ENSGT00900000143253 #34	ENSGT00390000008139 #35	ENSGT00940000160212 #36	ENSGT00940000159190 #37
Cricetidae_B	ANCESTRAL SPECIES	5	ENSGT00390000005075 #10	ENSGT00550000074901 #11	ENSGT00940000159757 #12	ENSGT00940000160687 #13	ENSGT00940000161650 #14	ENSGT00940000159836 #15	ENSGT00390000017697.b #16	ENSGT00940000153793.h.c.a.a.b.a.b #17	ENSGT00940000153793.h.c.a.a.a.d ##17	ENSGT00940000153793.h.c.a.a.a.c.a ##17	ENSGT00940000153793.h.c.a.b.a ##17	ENSGT00940000153793.h.c.a.b.b #18	ENSGT00940000164375 #19	ENSGT00940000155200 #20	ENSGT00940000162924 #21	ENSGT00390000018132.j #22	ENSGT00940000153528.a.b.a.a #23	ENSGT00940000162243 #24	ENSGT00390000002016 #25	ENSGT00420000029943 #26	ENSGT00940000158063 #27	ENSGT00510000049353 #28	ENSGT00390000004417.b #29	ENSGT01030000234613.a.b #30	ENSGT00940000156252 #31	ENSGT00940000159455 #32	ENSGT00940000160637 #33	ENSGT00900000143253 #34	ENSGT00390000008139 #35	ENSGT00940000160212 #36	ENSGT00940000159190 #37
Prairie vole	MODERN SPECIES	12	Cmtm3 (ENSMOCG00000004281) #7	Cmtm4 (ENSMOCG00000020651) #8	Dync1li2 (ENSMOCG00000012762) #9	Terb1 (ENSMOCG00000002618) #10	Nae1 (ENSMOCG00000015303) #11	Car7 (ENSMOCG00000018579) #12	Pdp2 (ENSMOCG00000017089) #13	Cdh16 (ENSMOCG00000016245) #14	Rrad (ENSMOCG00000013549) #15	Ciao2b (ENSMOCG00000006278) #16	Ces2a (ENSMOCG00000003082) #17	ENSMOCG00000002668 #18	Ces2h (ENSMOCG00000001262) #19	ENSMOCG00000018149 #20	Ces4a (ENSMOCG00000021744) #21	Cbfb (ENSMOCG00000013533) #22	Phaf1 (ENSMOCG00000008111) #23	B3gnt9 (ENSMOCG00000008518) #24	Tradd (ENSMOCG00000014235) #25	Fbxl8 (ENSMOCG00000005462) #26	Hsf4 (ENSMOCG00000017670) #27	Nol3 (ENSMOCG00000013389) #28	Matcap1 (ENSMOCG00000020057) #29	Exoc3l (ENSMOCG00000017278) #30	E2f4 (ENSMOCG00000006353) #31	Elmo3 (ENSMOCG00000009955) #32	ENSMOCG00000020837 #33	ENSMOCG00000021484 #34	ENSMOCG00000020885 #35	Fhod1 (ENSMOCG00000015100) #36	Slc9a5 (ENSMOCG00000000567) #37
Northern American deer mouse	MODERN SPECIES	18	Large1 (ENSPEMG00000009679)	ENSPEMG00000024290 ##17	ENSPEMG00000026049 ##17	ENSPEMG00000025734 ##17	ENSPEMG00000027421 ##17	ENSPEMG00000024673 ##17	ENSPEMG00000006982 ##17	ENSPEMG00000005595 ##17	Ces2f (ENSPEMG00000010068) #18	ENSPEMG00000024621 ##17	ENSPEMG00000028995 ##17	ENSPEMG00000027583 ##17	Ces2h (ENSPEMG00000028141) #19	ENSPEMG00000011511 #20	Ces4a (ENSPEMG00000011474) #21	Cbfb (ENSPEMG00000001647) #22	Phaf1 (ENSPEMG00000011386) #23	B3gnt9 (ENSPEMG00000025933) #24	Tradd (ENSPEMG00000009250) #25	Fbxl8 (ENSPEMG00000016420) #26	Hsf4 (ENSPEMG00000008346) #27	Nol3 (ENSPEMG00000003782) #28	Matcap1 (ENSPEMG00000008792) #29	Exoc3l (ENSPEMG00000015025) #30	E2f4 (ENSPEMG00000003342) #31	Elmo3 (ENSPEMG00000009050) #32	Fbxl9 (ENSPEMG00000017442) #33	Tmem208 (ENSPEMG00000011151) #35	Fhod1 (ENSPEMG00000024184) #36	Slc9a5 (ENSPEMG00000000684) #37	Plekhg4 (ENSPEMG00000002713)
Cricetinae	ANCESTRAL SPECIES	16	ENSGT00940000159757 #12	ENSGT00940000160687 #13	ENSGT00940000161650 #14	ENSGT00940000159836 #15	ENSGT00390000017697.b #16	ENSGT00940000153793.g ##17	ENSGT00940000153793.h.c.a.a.b.a.b #17	ENSGT00940000153793.h.c.a.a.b.a.a.a ##17	ENSGT00940000153793.h.c.a.a.a.c.a ##17	ENSGT00940000153793.h.c.a.b.a ##17	ENSGT00940000153793.h.c.a.b.b #18	ENSGT00940000153793.h.c.a.a.a.d ##17	ENSGT00940000164375 #19	ENSGT00940000155200 #20	ENSGT00940000162924 #21	ENSGT00390000018132.j #22	ENSGT00940000153528.a.b.a.a #23	ENSGT00940000162243 #24	ENSGT00390000002016 #25	ENSGT00420000029943 #26	ENSGT00940000158063 #27	ENSGT00510000049353 #28	ENSGT00390000004417.b #29	ENSGT01030000234613.a.b #30	ENSGT00940000156252 #31	ENSGT00940000159455 #32	ENSGT00940000160637 #33	ENSGT00390000008139 #35	ENSGT00940000160212 #36	ENSGT00940000159190 #37	ENSGT00940000158845
Golden Hamster	MODERN SPECIES	677									ENSMAUG00000013763 ##17	ENSMAUG00000014101 ##17	Ces2e (ENSMAUG00000014921) ##17	ENSMAUG00000018177 ##17	Ces2h (ENSMAUG00000000063) #19	ENSMAUG00000014836 #20	Ces4a (ENSMAUG00000018020) #21	Cbfb (ENSMAUG00000017365) #22	Phaf1 (ENSMAUG00000000635) #23	B3gnt9 (ENSMAUG00000000090) #24	Tradd (ENSMAUG00000000327) #25	Fbxl8 (ENSMAUG00000018497) #26	Hsf4 (ENSMAUG00000000872) #27	Nol3 (ENSMAUG00000001852) #28	Matcap1 (ENSMAUG00000002709) #29	Exoc3l (ENSMAUG00000000438) #30	ENSMAUG00000001090 #31	ENSMAUG00000003972	Lrrn3 (ENSMAUG00000006396)	Dock4 (ENSMAUG00000004565)	Zfp277 (ENSMAUG00000009201)	ENSMAUG00000012490	Ifrd1 (ENSMAUG00000013118)
Chinese hamster chok1gshd	MODERN SPECIES	112	ENSCGRG00001022881 #17	ENSCGRG00001025021 #17	ENSCGRG00001023717 ##17	ENSCGRG00001012927 ##17	ENSCGRG00001009635 ##17	ENSCGRG00001009450 ##17	ENSCGRG00001024666 ##17	Ces2e (ENSCGRG00001025032) ##17	Ces2f (ENSCGRG00001020935) #18	ENSCGRG00001011776 ##17	Ces2h (ENSCGRG00001009506) #19	ENSCGRG00001019809 ##17	ENSCGRG00001009474	ENSCGRG00001015634 #20	Ces4a (ENSCGRG00001001471) #21	Cbfb (ENSCGRG00001022815) #22	Phaf1 (ENSCGRG00001006064) #23	B3gnt9 (ENSCGRG00001019496) #24	Tradd (ENSCGRG00001011379) #25	Fbxl8 (ENSCGRG00001016684) #26	Hsf4 (ENSCGRG00001010856) #27	Nol3 (ENSCGRG00001016708) #28	Matcap1 (ENSCGRG00001022963) #29	Exoc3l (ENSCGRG00001003705) #30	E2f4 (ENSCGRG00001008394) #31	Elmo3 (ENSCGRG00001001125) #32	Fbxl9 (ENSCGRG00001000209) #33	Tmem208 (ENSCGRG00001009390) #35	Fhod1 (ENSCGRG00001019021) #36	Slc9a5 (ENSCGRG00001000242) #37	Plekhg4 (ENSCGRG00001016429)
Murinae	ANCESTRAL SPECIES	15	ENSGT00940000159757 #12	ENSGT00940000160687 #13	ENSGT00940000161650 #14	ENSGT00940000159836 #15	ENSGT00390000017697.b #16	ENSGT00940000153793.h.c.a.a.b #17	ENSGT00940000153793.h.c.a.a.a.a.b ##17	ENSGT00940000153793.h.c.a.a.a.a.a.a ##17	ENSGT00940000153793.h.c.a.a.a.a.a.b ##17	ENSGT00940000153793.h.c.a.b.a ##17	ENSGT00940000153793.h.c.a.b.b #18	ENSGT00940000153793.h.c.a.a.a.b ##17	ENSGT00940000164375 #19	ENSGT00940000155200 #20	ENSGT00940000162924 #21	ENSGT00390000018132.j #22	ENSGT00940000153528.a.b.a.a #23	ENSGT00940000162243 #24	ENSGT00390000002016 #25	ENSGT00420000029943 #26	ENSGT00940000158063 #27	ENSGT00510000049353 #28	ENSGT00390000004417.b #29	ENSGT01030000234613.a.b #30	ENSGT00940000156252 #31	ENSGT00940000159455 #32	ENSGT00940000160637 #33	ENSGT00390000008139 #35	ENSGT00940000160212 #36	ENSGT00940000159190 #37	ENSGT00940000158845
Rat	MODERN SPECIES	10	Ttc29 (ENSRNOG00000012342)	ENSRNOG00000062839	Ednra (ENSRNOG00000012721)	Tmem184c (ENSRNOG00000012860)	Prmt9 (ENSRNOG00000012928)	Arhgap10 (ENSRNOG00000013152)	LOC102552913 (ENSRNOG00000027022)	Nr3c2 (ENSRNOG00000034007)	Rps27a-ps6 (ENSRNOG00000029317)	ENSRNOG00000070405	Slc25a36l1 (ENSRNOG00000054284)	Ces2g (ENSRNOG00000070043) ##17	Ces2h (ENSRNOG00000039079) #19	ENSRNOG00000066514 #20	Ces4a (ENSRNOG00000014257) #21	Cbfb (ENSRNOG00000014647) #22	Phaf1 (ENSRNOG00000014668) #23	B3gnt9 (ENSRNOG00000053895) #24	Tradd (ENSRNOG00000015179) #25	Fbxl8 (ENSRNOG00000015242) #26	Hsf4 (ENSRNOG00000015253) #27	Nol3 (ENSRNOG00000015588) #28	Matcap1 (ENSRNOG00000015625) #29	E2f4 (ENSRNOG00000015708) #31	Elmo3 (ENSRNOG00000015800) #32	Lrrc29 (ENSRNOG00000025231) #33	Tmem208 (ENSRNOG00000015974) #35	Fhod1 (ENSRNOG00000054625) #36	Slc9a5 (ENSRNOG00000028844) #37	Plekhg4 (ENSRNOG00000016479)	Kctd19 (ENSRNOG00000016760)
Mus	ANCESTRAL SPECIES	6	ENSGT00940000159757 #12	ENSGT00940000160687 #13	ENSGT00940000161650 #14	ENSGT00940000159836 #15	ENSGT00390000017697.b #16	ENSGT00940000153793.h.c.a.a.b #17	ENSGT00940000153793.h.c.a.a.a.a.b ##17	ENSGT00940000153793.h.c.a.a.a.a.a.a ##17	ENSGT00940000153793.h.c.a.a.a.a.a.b ##17	ENSGT00940000153793.h.c.a.b.a ##17	ENSGT00940000153793.h.c.a.b.b #18	ENSGT00940000153793.h.c.a.a.a.b ##17	ENSGT00940000164375 #19	ENSGT00940000155200 #20	ENSGT00940000162924 #21	ENSGT00390000018132.j #22	ENSGT00940000153528.a.b.a.a #23	ENSGT00940000162243 #24	ENSGT00390000002016 #25	ENSGT00420000029943 #26	ENSGT00940000158063 #27	ENSGT00510000049353 #28	ENSGT00390000004417.b #29	ENSGT01030000234613.a.b #30	ENSGT00940000156252 #31	ENSGT00940000159455 #32	ENSGT00940000160637 #33	ENSGT00390000008139 #35	ENSGT00940000160212 #36	ENSGT00940000159190 #37	ENSGT00940000158845
Shrew mouse	MODERN SPECIES	12	Car7 (MGP_PahariEiJ_G0023048) #12	Pdp2 (MGP_PahariEiJ_G0023049) #13	Cdh16 (MGP_PahariEiJ_G0023050) #14	Rrad (MGP_PahariEiJ_G0023051) #15	Ciao2b (MGP_PahariEiJ_G0023052) #16	MGP_PahariEiJ_G0023055 ##17	MGP_PahariEiJ_G0023054 ##17	MGP_PahariEiJ_G0023056 ##17	Ces2e (MGP_PahariEiJ_G0023057) ##17	Ces2f (MGP_PahariEiJ_G0023058) #18	Ces2g (MGP_PahariEiJ_G0023059) ##17	Ces2h (MGP_PahariEiJ_G0023060) #19	MGP_PahariEiJ_G0023061 #20	MGP_PahariEiJ_G0023062 #20	Ces4a (MGP_PahariEiJ_G0023063) #21	Cbfb (MGP_PahariEiJ_G0023064) #22	Phaf1 (MGP_PahariEiJ_G0023065) #23	B3gnt9 (MGP_PahariEiJ_G0023066) #24	Tradd (MGP_PahariEiJ_G0023067) #25	Fbxl8 (MGP_PahariEiJ_G0023068) #26	Hsf4 (MGP_PahariEiJ_G0023069) #27	Nol3 (MGP_PahariEiJ_G0023070) #28	Matcap1 (MGP_PahariEiJ_G0023071) #29	Exoc3l (MGP_PahariEiJ_G0023072) #30	E2f4 (MGP_PahariEiJ_G0023073) #31	Elmo3 (MGP_PahariEiJ_G0023074) #32	Fbxl9 (MGP_PahariEiJ_G0023075) #33	Tmem208 (MGP_PahariEiJ_G0023076) #35	Fhod1 (MGP_PahariEiJ_G0023077) #36	Slc9a5 (MGP_PahariEiJ_G0023078) #37	Plekhg4 (MGP_PahariEiJ_G0023079)
Mus_A	ANCESTRAL SPECIES	8	ENSGT00940000159757 #12	ENSGT00940000160687 #13	ENSGT00940000161650 #14	ENSGT00940000159836 #15	ENSGT00390000017697.b #16	ENSGT00940000153793.h.c.a.a.b #17	ENSGT00940000153793.h.c.a.a.a.a.b ##17	ENSGT00940000153793.h.c.a.a.a.a.a.a ##17	ENSGT00940000153793.h.c.a.a.a.a.a.b ##17	ENSGT00940000153793.h.c.a.b.a ##17	ENSGT00940000153793.h.c.a.b.b #18	ENSGT00940000153793.h.c.a.a.a.b ##17	ENSGT00940000164375 #19	ENSGT00940000155200.m.b #20	ENSGT00940000162924 #21	ENSGT00390000018132.j #22	ENSGT00940000153528.a.b.a.a #23	ENSGT00940000162243 #24	ENSGT00390000002016 #25	ENSGT00420000029943 #26	ENSGT00940000158063 #27	ENSGT00510000049353 #28	ENSGT00390000004417.b #29	ENSGT01030000234613.a.b #30	ENSGT00940000156252 #31	ENSGT00940000159455 #32	ENSGT00940000160637 #33	ENSGT00390000008139 #35	ENSGT00940000160212 #36	ENSGT00940000159190 #37	ENSGT00940000158845
Ryukyu mouse	MODERN SPECIES	17	Terb1 (MGP_CAROLIEiJ_G0031448) #10	Nae1 (MGP_CAROLIEiJ_G0031449) #11	Car7 (MGP_CAROLIEiJ_G0031450) #12	Pdp2 (MGP_CAROLIEiJ_G0031451) #13	Cdh16 (MGP_CAROLIEiJ_G0031452) #14	Rrad (MGP_CAROLIEiJ_G0031453) #15	Ciao2b (MGP_CAROLIEiJ_G0031454) #16	Ces2c (MGP_CAROLIEiJ_G0031456) ##17	Ces2e (MGP_CAROLIEiJ_G0031457) ##17	Ces2f (MGP_CAROLIEiJ_G0031458) #18	Ces2g (MGP_CAROLIEiJ_G0031459) ##17	MGP_CAROLIEiJ_G0031460 ##17	Ces2h (MGP_CAROLIEiJ_G0031461) #19	MGP_CAROLIEiJ_G0031462 #20	Ces4a (MGP_CAROLIEiJ_G0031463) #21	Cbfb (MGP_CAROLIEiJ_G0031464) #22	Phaf1 (MGP_CAROLIEiJ_G0031465) #23	B3gnt9 (MGP_CAROLIEiJ_G0031466) #24	Tradd (MGP_CAROLIEiJ_G0031467) #25	Fbxl8 (MGP_CAROLIEiJ_G0031468) #26	Hsf4 (MGP_CAROLIEiJ_G0031469) #27	Nol3 (MGP_CAROLIEiJ_G0031470) #28	Matcap1 (MGP_CAROLIEiJ_G0031471) #29	Exoc3l (MGP_CAROLIEiJ_G0031472) #30	E2f4 (MGP_CAROLIEiJ_G0031473) #31	Elmo3 (MGP_CAROLIEiJ_G0031474) #32	MGP_CAROLIEiJ_G0031475 #33	Tmem208 (MGP_CAROLIEiJ_G0031476) #35	Fhod1 (MGP_CAROLIEiJ_G0031477) #36	Slc9a5 (MGP_CAROLIEiJ_G0031478) #37	Plekhg4 (MGP_CAROLIEiJ_G0031479)
Mus_B	ANCESTRAL SPECIES	6	ENSGT00940000159757 #12	ENSGT00940000160687 #13	ENSGT00940000161650 #14	ENSGT00940000159836 #15	ENSGT00390000017697.b.m #16	ENSGT00940000153793.h.c.a.a.b #17	ENSGT00940000153793.h.c.a.a.a.a.b ##17	ENSGT00940000153793.h.c.a.a.a.a.a.a ##17	ENSGT00940000153793.h.c.a.a.a.a.a.b.a.a ##17	ENSGT00940000153793.h.c.a.b.a ##17	ENSGT00940000153793.h.c.a.b.b #18	ENSGT00940000153793.h.c.a.a.a.b ##17	ENSGT00940000164375 #19	ENSGT00940000155200.m.b #20	ENSGT00940000162924 #21	ENSGT00390000018132.j #22	ENSGT00940000153528.a.b.a.a #23	ENSGT00940000162243 #24	ENSGT00390000002016 #25	ENSGT00420000029943 #26	ENSGT00940000158063 #27	ENSGT00510000049353 #28	ENSGT00390000004417.b #29	ENSGT01030000234613.a.b #30	ENSGT00940000156252 #31	ENSGT00940000159455 #32	ENSGT00940000160637 #33	ENSGT00390000008139 #35	ENSGT00940000160212 #36	ENSGT00940000159190 #37	ENSGT00940000158845
Mouse	MODERN SPECIES	17	Car7 (ENSMUSG00000031883) #12	Pdp2 (ENSMUSG00000048371) #13	Cdh16 (ENSMUSG00000031881) #14	Rrad (ENSMUSG00000031880) #15	Ciao2b (ENSMUSG00000031879) #16	Ces2a (ENSMUSG00000055730) #17	Ces2b (ENSMUSG00000050097) ##17	Ces2c (ENSMUSG00000061825) ##17	Ces2e (ENSMUSG00000031886) ##17	Ces2f (ENSMUSG00000062826) #18	Ces2g (ENSMUSG00000031877) ##17	Ces2h (ENSMUSG00000091813) #19	Ces3a (ENSMUSG00000069922) #20	Ces3b (ENSMUSG00000062181) #20	Ces4a (ENSMUSG00000060560) #21	Cbfb (ENSMUSG00000031885) #22	Phaf1 (ENSMUSG00000031889) #23	B3gnt9 (ENSMUSG00000069920) #24	Tradd (ENSMUSG00000031887) #25	Fbxl8 (ENSMUSG00000033313) #26	Hsf4 (ENSMUSG00000033249) #27	Nol3 (ENSMUSG00000014776) #28	Matcap1 (ENSMUSG00000014837) #29	Exoc3l (ENSMUSG00000043251) #30	E2f4 (ENSMUSG00000014859) #31	Elmo3 (ENSMUSG00000014791) #32	Fbxl9 (ENSMUSG00000041679) #33	Tmem208 (ENSMUSG00000014856) #35	Fhod1 (ENSMUSG00000014778) #36	Slc9a5 (ENSMUSG00000014786) #37	Plekhg4 (ENSMUSG00000014782)
Mus_C	ANCESTRAL SPECIES	5	ENSGT00940000159573 #8	ENSGT00390000008295.a #9	ENSGT00390000005075 #10	ENSGT00550000074901 #11	ENSGT00940000159757 #12	ENSGT00940000160687 #13	ENSGT00940000161650 #14	ENSGT00940000159836 #15	ENSGT00390000017697.b.m #16	ENSGT00940000153793.h.c.a.b.a ##17	ENSGT00940000153793.h.c.a.b.b #18	ENSGT00940000153793.h.c.a.a.a.b ##17	ENSGT00940000164375 #19	ENSGT00940000155200.m.b #20	ENSGT00940000162924 #21	ENSGT00390000018132.j #22	ENSGT00940000153528.a.b.a.a #23	ENSGT00940000162243 #24	ENSGT00390000002016 #25	ENSGT00420000029943 #26	ENSGT00940000158063 #27	ENSGT00510000049353 #28	ENSGT00390000004417.b #29	ENSGT01030000234613.a.b #30	ENSGT00940000156252 #31	ENSGT00940000159455 #32	ENSGT00940000160637 #33	ENSGT00390000008139 #35	ENSGT00940000160212 #36	ENSGT00940000159190 #37	ENSGT00940000158845
spretus	MODERN SPECIES	17	Terb1 (MGP_SPRETEiJ_G0032565) #10	Nae1 (MGP_SPRETEiJ_G0032566) #11	Car7 (MGP_SPRETEiJ_G0032567) #12	Pdp2 (MGP_SPRETEiJ_G0032568) #13	Cdh16 (MGP_SPRETEiJ_G0032569) #14	Rrad (MGP_SPRETEiJ_G0032570) #15	Ciao2b (MGP_SPRETEiJ_G0032571) #16	MGP_SPRETEiJ_G0032574 ##17	Ces2e (MGP_SPRETEiJ_G0032575) ##17	Ces2f (MGP_SPRETEiJ_G0032576) #18	Ces2g (MGP_SPRETEiJ_G0032577) ##17	Ces2h (MGP_SPRETEiJ_G0032578) #19	MGP_SPRETEiJ_G0032579 #20	MGP_SPRETEiJ_G0032580 #20	Ces4a (MGP_SPRETEiJ_G0032581) #21	Cbfb (MGP_SPRETEiJ_G0032582) #22	Phaf1 (MGP_SPRETEiJ_G0032583) #23	B3gnt9 (MGP_SPRETEiJ_G0032584) #24	Tradd (MGP_SPRETEiJ_G0032585) #25	Fbxl8 (MGP_SPRETEiJ_G0032586) #26	Hsf4 (MGP_SPRETEiJ_G0032587) #27	Nol3 (MGP_SPRETEiJ_G0032588) #28	Matcap1 (MGP_SPRETEiJ_G0032589) #29	Exoc3l (MGP_SPRETEiJ_G0032590) #30	E2f4 (MGP_SPRETEiJ_G0032591) #31	Elmo3 (MGP_SPRETEiJ_G0032592) #32	MGP_SPRETEiJ_G0032593 #33	Tmem208 (MGP_SPRETEiJ_G0032594) #35	MGP_SPRETEiJ_G0032595 #36	Slc9a5 (MGP_SPRETEiJ_G0032596) #37	Plekhg4 (MGP_SPRETEiJ_G0032597)
Steppe mouse	MODERN SPECIES	2682															Ces4a (ENSMSIG00000013129) #21	Cbfb (ENSMSIG00000013151) #22	Phaf1 (ENSMSIG00000013286) #23	B3gnt9 (ENSMSIG00000013307) #24	Tradd (ENSMSIG00000013313) #25	Fbxl8 (ENSMSIG00000013320) #26	Hsf4 (ENSMSIG00000013332) #27	Nol3 (ENSMSIG00000014052) #28	Matcap1 (ENSMSIG00000014061) #29	Exoc3l (ENSMSIG00000014129) #30	E2f4 (ENSMSIG00000014157) #31	Elmo3 (ENSMSIG00000014196) #32	Fbxl9 (ENSMSIG00000014362) #33	ENSMSIG00000014410 #35	Fhod1 (ENSMSIG00000014442) #36	Slc9a5 (ENSMSIG00000015767) #37	Plekhg4 (ENSMSIG00000015844)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1060											ENSNGAG00000015448 #17	ENSNGAG00000013659 #17	Ces2h (ENSNGAG00000001203) #19	ENSNGAG00000001031 #20	Ces4a (ENSNGAG00000015115) #21	Cbfb (ENSNGAG00000009578) #22	Phaf1 (ENSNGAG00000000365) #23	B3gnt9 (ENSNGAG00000015451) #24	Tradd (ENSNGAG00000014423) #25	Fbxl8 (ENSNGAG00000014216) #26	Hsf4 (ENSNGAG00000014341) #27	Nol3 (ENSNGAG00000010053) #28	Matcap1 (ENSNGAG00000008649) #29	Exoc3l (ENSNGAG00000011128) #30	ENSNGAG00000009573 #31	Elmo3 (ENSNGAG00000006509) #32	ENSNGAG00000019899 #33	Tmem208 (ENSNGAG00000012064) #35	Fhod1 (ENSNGAG00000011675) #36	Slc9a5 (ENSNGAG00000011230) #37	Plekhg4 (ENSNGAG00000013487)
Lesser Egyptian jerboa	MODERN SPECIES	85	Insr (ENSJJAG00000023697)	Slc35d1 (ENSJJAG00000018167)	Mier1 (ENSJJAG00000014161)	Dnai4 (ENSJJAG00000013132)	ENSJJAG00000001836	Sgip1 (ENSJJAG00000011912)	ENSJJAG00000023231	ENSJJAG00000011111	Pde4b (ENSJJAG00000015966)	Lepr (ENSJJAG00000001138)	ENSJJAG00000024179	ENSJJAG00000023828	ENSJJAG00000014277	Ak4 (ENSJJAG00000014122)	ENSJJAG00000010970	Cbfb (ENSJJAG00000013223) #22	ENSJJAG00000012442 #23	B3gnt9 (ENSJJAG00000023578) #24	Tradd (ENSJJAG00000008375) #25	Fbxl8 (ENSJJAG00000021256) #26	Hsf4 (ENSJJAG00000001368) #27	Nol3 (ENSJJAG00000024314) #28	Matcap1 (ENSJJAG00000012976) #29	Exoc3l (ENSJJAG00000020372) #30	ENSJJAG00000013722 #31	Elmo3 (ENSJJAG00000013057) #32	Fbxl9 (ENSJJAG00000014941) #33	ENSJJAG00000023968 #35	Fhod1 (ENSJJAG00000000338) #36	Slc9a5 (ENSJJAG00000007169) #37	ENSJJAG00000003130
Kangaroo rat	MODERN SPECIES	337	Got2 (ENSDORG00000015354)	ENSDORG00000026429	ENSDORG00000023898	Cdh8 (ENSDORG00000008036)	Cdh11 (ENSDORG00000002619)	Bean1 (ENSDORG00000015016)	Tk2 (ENSDORG00000015017)	Cmtm3 (ENSDORG00000008429) #7	Dync1li2 (ENSDORG00000010219) #9	Nae1 (ENSDORG00000013530) #11	Car7 (ENSDORG00000013532) #12	Pdp2 (ENSDORG00000024268) #13	Rrad (ENSDORG00000013540) #15	ENSDORG00000013543 #16	ENSDORG00000029390	Cbfb (ENSDORG00000029036) #22	Phaf1 (ENSDORG00000015125) #23	B3gnt9 (ENSDORG00000030078) #24	Tradd (ENSDORG00000015126) #25	Fbxl8 (ENSDORG00000015127) #26	Hsf4 (ENSDORG00000015128) #27	Nol3 (ENSDORG00000026944) #28	Matcap1 (ENSDORG00000015129) #29	Exoc3l (ENSDORG00000015130) #30	ENSDORG00000015131 #31	Elmo3 (ENSDORG00000015132) #32	Fbxl9 (ENSDORG00000015136) #33	Tmem208 (ENSDORG00000013263) #35	Fhod1 (ENSDORG00000013253) #36	Slc9a5 (ENSDORG00000005859) #37	ENSDORG00000005865
Rodentia_A	ANCESTRAL SPECIES	6	ENSGT00940000163203	ENSGT00940000160432 #7	ENSGT00940000159573 #8	ENSGT00390000008295.a #9	ENSGT00390000005075 #10	ENSGT00550000074901 #11	ENSGT00940000159757 #12	ENSGT00940000160687 #13	ENSGT00940000161650 #14	ENSGT00940000159836 #15	ENSGT00390000017697.b #16	ENSGT00940000153793 #17	ENSGT00940000164375 #19	ENSGT00940000155200 #20	ENSGT00940000162924 #21	ENSGT00390000018132.j #22	ENSGT00940000153528.a.b.a.a #23	ENSGT00940000162243 #24	ENSGT00390000002016 #25	ENSGT00420000029943 #26	ENSGT00940000158063 #27	ENSGT00510000049353 #28	ENSGT00390000004417.b #29	ENSGT01030000234613.a.b #30	ENSGT00940000156252 #31	ENSGT00940000159455 #32	ENSGT00940000160637 #33	ENSGT00900000143253 #34	ENSGT00390000008139 #35	ENSGT00940000160212 #36	ENSGT00940000159190 #37
Sciuridae	ANCESTRAL SPECIES	5	ENSGT00940000160432 #7	ENSGT00940000159573 #8	ENSGT00390000008295.a #9	ENSGT00390000005075 #10	ENSGT00550000074901 #11	ENSGT00940000159757 #12	ENSGT00940000160687 #13	ENSGT00940000161650 #14	ENSGT00940000159836 #15	ENSGT00390000017697.b #16	ENSGT00940000153793.l #17	ENSGT00940000153793.k #17	ENSGT00940000164375 #19	ENSGT00940000155200 #20	ENSGT00940000162924 #21	ENSGT00390000018132.j #22	ENSGT00940000153528.a.b.a.a #23	ENSGT00940000162243 #24	ENSGT00390000002016 #25	ENSGT00420000029943 #26	ENSGT00940000158063 #27	ENSGT00510000049353 #28	ENSGT00390000004417.b #29	ENSGT01030000234613.a.b #30	ENSGT00940000156252 #31	ENSGT00940000159455 #32	ENSGT00940000160637 #33	ENSGT00390000008139 #35	ENSGT00940000160212 #36	ENSGT00940000159190 #37	ENSGT00900000143429
Marmotini	ANCESTRAL SPECIES	17	ENSGT00940000159573 #8	ENSGT00390000008295.a #9	ENSGT00390000005075 #10	ENSGT00550000074901 #11	ENSGT00940000159757 #12	ENSGT00940000160687 #13	ENSGT00940000161650 #14	ENSGT00940000159836 #15	ENSGT00390000017697.b #16	ENSGT00940000153793.l #17	ENSGT00940000153793.k.a.a.b.a #17	ENSGT00940000153793.k.a.a.a.b #17	ENSGT00940000164375.a #19	ENSGT00940000155200 #20	ENSGT00940000162924 #21	ENSGT00390000018132.j #22	ENSGT00940000153528.a.b.a.a #23	ENSGT00940000162243 #24	ENSGT00390000002016 #25	ENSGT00420000029943 #26	ENSGT00940000158063 #27	ENSGT00510000049353 #28	ENSGT00390000004417.b #29	ENSGT01030000234613.a.b #30	ENSGT00940000156252 #31	ENSGT00940000159455 #32	ENSGT00940000160637 #33	ENSGT00390000008139 #35	ENSGT00940000160212 #36	ENSGT00940000159190 #37	ENSGT00900000143429
Marmotini_b	ANCESTRAL SPECIES	7	ENSGT00390000005075 #10	ENSGT00550000074901 #11	ENSGT00940000159757 #12	ENSGT00940000160687 #13	ENSGT00940000161650 #14	ENSGT00940000159836 #15	ENSGT00390000017697.b #16	ENSGT00940000164375.b #19	ENSGT00940000153793.k.a.a.a.a.a.b #17	ENSGT00940000153793.k.a.a.a.a.a.a #17	ENSGT00940000153793.k.a.a.b.a #17	ENSGT00940000153793.k.a.a.a.b #17	ENSGT00940000164375.a #19	ENSGT00940000155200 #20	ENSGT00940000162924 #21	ENSGT00390000018132.j #22	ENSGT00940000153528.a.b.a.a #23	ENSGT00940000162243 #24	ENSGT00390000002016 #25	ENSGT00420000029943 #26	ENSGT00940000158063 #27	ENSGT00510000049353 #28	ENSGT00390000004417.b #29	ENSGT01030000234613.a.b #30	ENSGT00940000156252 #31	ENSGT00940000159455 #32	ENSGT00940000160637 #33	ENSGT00390000008139 #35	ENSGT00940000160212 #36	ENSGT00940000159190 #37	ENSGT00900000143429
Arctic ground squirrel	MODERN SPECIES	575													ENSUPAG00010002247 #19	CES3 (ENSUPAG00010002231) #20	CES4A (ENSUPAG00010002214) #21	CBFB (ENSUPAG00010002159) #22	PHAF1 (ENSUPAG00010002137) #23	B3GNT9 (ENSUPAG00010002133) #24	TRADD (ENSUPAG00010002125) #25	FBXL8 (ENSUPAG00010002122) #26	HSF4 (ENSUPAG00010001926) #27	ENSUPAG00010001909 #28	MATCAP1 (ENSUPAG00010001869) #29	EXOC3L1 (ENSUPAG00010001853) #30	E2F4 (ENSUPAG00010001834) #31	ELMO3 (ENSUPAG00010001733) #32	ENSUPAG00010001706 #33	TMEM208 (ENSUPAG00010001695) #35	FHOD1 (ENSUPAG00010001636) #36	SLC9A5 (ENSUPAG00010001612) #37	PLEKHG4 (ENSUPAG00010001495)
Squirrel	MODERN SPECIES	75	ENSSTOG00000029943 #14	ENSSTOG00000031778	ENSSTOG00000007823 #14	RRAD (ENSSTOG00000007859) #15	CIAO2B (ENSSTOG00000007870) #16	ENSSTOG00000028587 #19	ENSSTOG00000019872 #17	ENSSTOG00000024931 #17	ENSSTOG00000025757 #17	ENSSTOG00000022937 #17	ENSSTOG00000027386 #17	ENSSTOG00000026289 #17	ENSSTOG00000025164 #19	CES3 (ENSSTOG00000012032) #20	CES4A (ENSSTOG00000011337) #21	CBFB (ENSSTOG00000011344) #22	PHAF1 (ENSSTOG00000011346) #23	B3GNT9 (ENSSTOG00000028759) #24	TRADD (ENSSTOG00000011360) #25	FBXL8 (ENSSTOG00000026518) #26	HSF4 (ENSSTOG00000027009) #27	ENSSTOG00000022251 #28	MATCAP1 (ENSSTOG00000016431) #29	EXOC3L1 (ENSSTOG00000016432) #30	E2F4 (ENSSTOG00000016434) #31	ELMO3 (ENSSTOG00000026655) #32	ENSSTOG00000022552 #33	TMEM208 (ENSSTOG00000016436) #35	FHOD1 (ENSSTOG00000020262) #36	SLC9A5 (ENSSTOG00000016438) #37	ENSSTOG00000030446
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	8	CMTM4 (ENSSVLG00005025679) #8	DYNC1LI2 (ENSSVLG00005025665) #9	TERB1 (ENSSVLG00005025637) #10	NAE1 (ENSSVLG00005025610) #11	CA7 (ENSSVLG00005025581) #12	PDP2 (ENSSVLG00005025571) #13	CDH16 (ENSSVLG00005025529) #14	RRAD (ENSSVLG00005025495) #15	CIAO2B (ENSSVLG00005025484) #16	ENSSVLG00005025467 #17	ENSSVLG00005025347 #17	ENSSVLG00005025098 #19	CES3 (ENSSVLG00005024805) #20	CES4A (ENSSVLG00005024667) #21	ENSSVLG00005024618	CBFB (ENSSVLG00005024570) #22	PHAF1 (ENSSVLG00005024553) #23	B3GNT9 (ENSSVLG00005024534) #24	TRADD (ENSSVLG00005024499) #25	FBXL8 (ENSSVLG00005024480) #26	HSF4 (ENSSVLG00005024450) #27	ENSSVLG00005024414 #28	MATCAP1 (ENSSVLG00005024362) #29	EXOC3L1 (ENSSVLG00005024301) #30	ENSSVLG00005024234 #31	ELMO3 (ENSSVLG00005024014) #32	ENSSVLG00005023967 #33	TMEM208 (ENSSVLG00005023939) #35	SLC9A5 (ENSSVLG00005023832) #37	PLEKHG4 (ENSSVLG00005023652)	KCTD19 (ENSSVLG00005023552)
Eurasian red squirrel	MODERN SPECIES	16														ENSSVLG00005004569	ENSSVLG00005004553	ENSSVLG00005004513 #22	ENSSVLG00005004498	ENSSVLG00005004488	ENSSVLG00005004462	ENSSVLG00005004447	ENSSVLG00005004423	ENSSVLG00005004354	ENSSVLG00005004345	ENSSVLG00005004326	ENSSVLG00005004312	ENSSVLG00005017769	ENSSVLG00005017749	H1-5 (ENSSVLG00005017730)	ENSSVLG00005017713	ENSSVLG00005017687	ENSSVLG00005017645
Hystricomorpha	ANCESTRAL SPECIES	22	ENSGT00940000162264	ENSGT00940000160432 #7	ENSGT00940000159573 #8	ENSGT00390000008295.a #9	ENSGT00390000005075 #10	ENSGT00550000074901 #11	ENSGT00940000159757 #12	ENSGT00940000160687 #13	ENSGT00940000161650 #14	ENSGT00940000159836 #15	ENSGT00390000017697.b #16	ENSGT00940000153793.i.a #17	ENSGT00940000153793.j.a #17	ENSGT00940000155200 #20	ENSGT00940000162924 #21	ENSGT00390000018132.j #22	ENSGT00940000153528.a.b.a.a #23	ENSGT00940000162243 #24	ENSGT00390000002016 #25	ENSGT00420000029943 #26	ENSGT00940000158063 #27	ENSGT00510000049353 #28	ENSGT00390000004417.b #29	ENSGT01030000234613.a.b #30	ENSGT00940000156252 #31	ENSGT00940000159455 #32	ENSGT00940000160637 #33	ENSGT00900000143253 #34	ENSGT00390000008139 #35	ENSGT00940000160212 #36	ENSGT00940000159190 #37
Naked mole-rat female	MODERN SPECIES	26	MBTPS1 (ENSHGLG00000016427)	SLC38A8 (ENSHGLG00000018305)	OSGIN1 (ENSHGLG00000019076)	HSBP1 (ENSHGLG00000044111)	CDH13 (ENSHGLG00000016234)	ENSHGLG00000011239	ENSHGLG00000038905	ENSHGLG00000018728	ENSHGLG00000014325 #17	ENSHGLG00000014852 #17	ENSHGLG00000042496 #17	ENSHGLG00000042617	ENSHGLG00000016814 #17	ENSHGLG00000012610 #20	CES4A (ENSHGLG00000033432) #21	CBFB (ENSHGLG00000050469) #22	ENSHGLG00000046177	ENSHGLG00000016123 #23	ENSHGLG00000009942	B3GNT9 (ENSHGLG00000035794) #24	FBXL8 (ENSHGLG00000019079) #26	HSF4 (ENSHGLG00000014438) #27	ENSHGLG00000037771 #28	MATCAP1 (ENSHGLG00000011035) #29	EXOC3L1 (ENSHGLG00000010315) #30	E2F4 (ENSHGLG00000014276) #31	ELMO3 (ENSHGLG00000014154) #32	ENSHGLG00000019291 #33	ENSHGLG00000014519 #34	TMEM208 (ENSHGLG00000015097) #35	FHOD1 (ENSHGLG00000012638) #36
Hystricomorpha_a	ANCESTRAL SPECIES	22	ENSGT00940000162264	ENSGT00940000160432 #7	ENSGT00940000159573 #8	ENSGT00390000008295.a #9	ENSGT00390000005075 #10	ENSGT00550000074901 #11	ENSGT00940000159757 #12	ENSGT00940000160687 #13	ENSGT00940000161650 #14	ENSGT00940000159836 #15	ENSGT00390000017697.b #16	ENSGT00940000153793.i.a #17	ENSGT00940000153793.j.a #17	ENSGT00940000155200 #20	ENSGT00940000162924 #21	ENSGT00390000018132.j #22	ENSGT00940000153528.a.b.a.a #23	ENSGT00940000162243 #24	ENSGT00390000002016 #25	ENSGT00420000029943 #26	ENSGT00940000158063 #27	ENSGT00510000049353 #28	ENSGT00390000004417.b #29	ENSGT01030000234613.a.b #30	ENSGT00940000156252 #31	ENSGT00940000159455 #32	ENSGT00940000160637 #33	ENSGT00390000008139 #35	ENSGT00940000160212 #36	ENSGT00940000159190 #37	ENSGT00940000158845
Guinea pig	MODERN SPECIES	22	TERB1 (ENSCPOG00000015414) #10	NAE1 (ENSCPOG00000020116) #11	CA7 (ENSCPOG00000024957) #12	ENSCPOG00000033546	PDP2 (ENSCPOG00000009661) #13	CDH16 (ENSCPOG00000021245) #14	RRAD (ENSCPOG00000025211) #15	CIAO2B (ENSCPOG00000007431) #16	ENSCPOG00000034731 #17	ENSCPOG00000034407 #17	ENSCPOG00000005610 #17	ENSCPOG00000034227 #19	ENSCPOG00000039038 #17	CES3 (ENSCPOG00000033893) #20	CES4A (ENSCPOG00000005603) #21	ENSCPOG00000010825 #22	PHAF1 (ENSCPOG00000010828) #23	B3GNT9 (ENSCPOG00000026402) #24	TRADD (ENSCPOG00000010831) #25	FBXL8 (ENSCPOG00000010832) #26	HSF4 (ENSCPOG00000010834) #27	ENSCPOG00000004946 #28	MATCAP1 (ENSCPOG00000037427) #29	EXOC3L1 (ENSCPOG00000010839) #30	E2F4 (ENSCPOG00000010845) #31	ELMO3 (ENSCPOG00000010852) #32	ENSCPOG00000025275 #33	TMEM208 (ENSCPOG00000010856) #35	FHOD1 (ENSCPOG00000010858) #36	SLC9A5 (ENSCPOG00000010865) #37	PLEKHG4 (ENSCPOG00000024564)
Hystricomorpha_b	ANCESTRAL SPECIES	15	ENSGT00940000159573 #8	ENSGT00390000008295.a #9	ENSGT00390000005075 #10	ENSGT00550000074901 #11	ENSGT00940000159757 #12	ENSGT00940000160687 #13	ENSGT00940000161650 #14	ENSGT00940000159836 #15	ENSGT00390000017697.b #16	ENSGT00940000153793.i.a #17	ENSGT00940000153793.i.b.c #17	ENSGT00940000164375 #19	ENSGT00940000153793.j.a #17	ENSGT00940000155200 #20	ENSGT00940000162924 #21	ENSGT00390000018132.j #22	ENSGT00940000153528.a.b.a.a #23	ENSGT00940000162243 #24	ENSGT00390000002016 #25	ENSGT00420000029943 #26	ENSGT00940000158063 #27	ENSGT00510000049353 #28	ENSGT00390000004417.b #29	ENSGT01030000234613.a.b #30	ENSGT00940000156252 #31	ENSGT00940000159455 #32	ENSGT00940000160637 #33	ENSGT00390000008139 #35	ENSGT00940000160212 #36	ENSGT00940000159190 #37	ENSGT00940000158845
Long-tailed chinchilla	MODERN SPECIES	191											ENSCLAG00000004810 #19	ENSCLAG00000004482 #17	ENSCLAG00000004579 #17	CES3 (ENSCLAG00000003979) #20	CES4A (ENSCLAG00000003809) #21	CBFB (ENSCLAG00000003276) #22	PHAF1 (ENSCLAG00000011848) #23	TRADD (ENSCLAG00000013206) #25	FBXL8 (ENSCLAG00000012818) #26	HSF4 (ENSCLAG00000011421) #27	ENSCLAG00000010849 #28	MATCAP1 (ENSCLAG00000008743) #29	EXOC3L1 (ENSCLAG00000008542) #30	E2F4 (ENSCLAG00000008447) #31	ELMO3 (ENSCLAG00000009770) #32	ENSCLAG00000009119 #33	TMEM208 (ENSCLAG00000008905) #35	FHOD1 (ENSCLAG00000015436) #36	SLC9A5 (ENSCLAG00000013034) #37	ENSCLAG00000006869	KCTD19 (ENSCLAG00000005454)
Degu	MODERN SPECIES	52	ENSODEG00000016176 #11	CA7 (ENSODEG00000015891) #12	PDP2 (ENSODEG00000020328) #13	CDH16 (ENSODEG00000016010) #14	RRAD (ENSODEG00000015827) #15	ENSODEG00000015617 #16	ENSODEG00000016240 #17	ENSODEG00000016345	ENSODEG00000016915 #17	ENSODEG00000015554 #17	ENSODEG00000017576 #17	ENSODEG00000016121 #19	ENSODEG00000015656 #17	CES3 (ENSODEG00000016302) #20	CES4A (ENSODEG00000015763) #21	CBFB (ENSODEG00000016515) #22	PHAF1 (ENSODEG00000015277) #23	B3GNT9 (ENSODEG00000015783) #24	TRADD (ENSODEG00000016273) #25	FBXL8 (ENSODEG00000016675) #26	HSF4 (ENSODEG00000016261) #27	ENSODEG00000015937 #28	MATCAP1 (ENSODEG00000017236) #29	EXOC3L1 (ENSODEG00000015825) #30	ENSODEG00000015743 #31	ELMO3 (ENSODEG00000015567) #32	ENSODEG00000015353 #33	TMEM208 (ENSODEG00000015620) #35	FHOD1 (ENSODEG00000015610) #36	SLC9A5 (ENSODEG00000016195) #37	ENSODEG00000015992