Rodentia ANCESTRAL SPECIES 11 ENSGT00940000161824 ENSGT00510000047886.a #7 ENSGT00510000048486 #8 ENSGT00940000153560.b.b.a #9 ENSGT01060000248591.a.a.a.a #10 ENSGT00950000183188.A.b #11 ENSGT00390000017961 #12 ENSGT00940000158690 #13 ENSGT01050000244891.B #14 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #17 ENSGT00950000183183.b.b #18 ENSGT00390000018509.a #19 ENSGT00390000014300 #20 ENSGT00940000153974.A #21 ENSGT00940000155520 #22 ENSGT00510000046986 #23 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #24 ENSGT00940000162299 #25 ENSGT00760000119441 #26 ENSGT00510000055200 ENSGT00940000162113 #27 ENSGT00950000182958.a.b.b.j.a.a.b ##35 ENSGT01090000260018.B.b ENSGT01090000260005.a.a.a.a ENSGT01100000263517.b.d.m.b.a.a ENSGT00940000161592 ENSGT00940000161607 ENSGT00940000153104.e.b.b Rodentia_B ANCESTRAL SPECIES 29 ENSGT00940000158475 ENSGT00940000161824 ENSGT00510000047886.a #7 ENSGT00510000048486 #8 ENSGT00940000153560.b.b.a #9 ENSGT01060000248591.a.a.a.a #10 ENSGT00950000183188.A.b #11 ENSGT00390000017961 #12 ENSGT00940000158690 #13 ENSGT01050000244891.B #14 ENSGT00950000183183.b.a #17 ENSGT00950000183183.b.b #18 ENSGT00390000018509.a #19 ENSGT00390000014300 #20 ENSGT00940000153974.A #21 ENSGT00940000155520 #22 ENSGT00510000046986 #23 ENSGT00940000162347 #24 ENSGT00940000162299 #25 ENSGT00760000119441 #26 ENSGT00940000162113 #27 ENSGT00950000182958.a.b.b.j.a.a.a.b #33 ENSGT00950000182958.a.b.b.j.a.a.b ##35 ENSGT00950000182958.a.b.b.j.a.b ##35 ENSGT01090000260018.B.b ENSGT01090000260005.a.a.a.a ENSGT01100000263517.b.d.m.b.a.a ENSGT00940000161592 ENSGT00940000161607.d ENSGT00950000182890.D.c.a.b ENSGT00940000153104.e.b.b Myomorpha ANCESTRAL SPECIES 31 ENSGT00940000158475 ENSGT00940000161824 ENSGT00510000047886.a #7 ENSGT00510000048486 #8 ENSGT00940000153560.b.b.a #9 ENSGT01060000248591.a.a.a.a #10 ENSGT00950000183188.A.b #11 ENSGT00390000017961 #12 ENSGT00940000158690 #13 ENSGT01050000244891.B #14 ENSGT00950000183183.b.a #17 ENSGT00950000183183.b.b #18 ENSGT00390000018509.a #19 ENSGT00390000014300 #20 ENSGT00940000153974.A #21 ENSGT00940000155520 #22 ENSGT00510000046986 #23 ENSGT00940000162347 #24 ENSGT00940000162299 #25 ENSGT00760000119441 #26 ENSGT00940000162113 #27 ENSGT00950000182958.a.b.b.j.a.a.a.a #35 ENSGT00950000182958.a.b.b.j.a.b ##35 ENSGT01090000260018.B.b ENSGT01090000260005.a.a.a.a ENSGT01100000263517.b.d.m.b.a.a ENSGT00940000161592 ENSGT00940000161607.d ENSGT00950000182890.D.c.a.b ENSGT00940000153104.e.b.b ENSGT00950000183073.a.a.b Muroidea ANCESTRAL SPECIES 51 ENSGT00940000158475 ENSGT00940000161824 ENSGT00510000047886.a #7 ENSGT00510000048486 #8 ENSGT00940000153560.b.b.a #9 ENSGT01060000248591.a.a.a.a #10 ENSGT00950000183188.A.b #11 ENSGT00390000017961 #12 ENSGT00940000158690 #13 ENSGT01050000244891.B #14 ENSGT00950000183183.b.a #17 ENSGT00950000183183.b.b #18 ENSGT00390000018509.a #19 ENSGT00390000014300 #20 ENSGT00940000153974.A #21 ENSGT00940000155520 #22 ENSGT00510000046986.c #23 ENSGT00940000162347 #24 ENSGT00940000162299 #25 ENSGT00760000119441 #26 ENSGT00940000162113 #27 ENSGT00950000182958.a.b.b.j.a.a.a.b #33 ENSGT00950000182958.a.b.b.j.a.a.a.a #35 Muroidea_A ANCESTRAL SPECIES 27 ENSGT00940000158475 ENSGT00940000161824 ENSGT00510000047886.a #7 ENSGT00510000048486 #8 ENSGT00940000153560.b.b.a #9 ENSGT01060000248591.a.a.a.a #10 ENSGT00950000183188.A.b #11 ENSGT00390000017961 #12 ENSGT00940000158690 #13 ENSGT01050000244891.B #14 ENSGT00950000183183.b.a #17 ENSGT00950000183183.b.b #18 ENSGT00390000018509.a #19 ENSGT00390000014300 #20 ENSGT00940000153974.A #21 ENSGT00940000155520 #22 ENSGT00510000046986.c #23 ENSGT00940000162347 #24 ENSGT00940000162299 #25 ENSGT00760000119441 #26 ENSGT00940000162113 #27 ENSGT00950000182958.a.b.b.j.a.a.a.b #33 ENSGT00950000182958.a.b.b.j.a.a.a.a #35 ENSGT00940000158530.j ENSGT00940000157104 ENSGT00950000182962.a.a ENSGT01060000248564.b.a.b.a ENSGT00940000153284.a.h ENSGT00950000182922.a.a.b.d ENSGT00940000161208 ENSGT00940000155647 Murinae ANCESTRAL SPECIES 28 ENSGT00940000158475 ENSGT00940000161824 ENSGT00510000047886.a #7 ENSGT00510000048486 #8 ENSGT00940000153560.b.b.a #9 ENSGT01060000248591.a.a.a.a #10 ENSGT00950000183188.A.b #11 ENSGT00390000017961 #12 ENSGT00940000158690 #13 ENSGT01050000244891.B #14 ENSGT00950000183183.b.a #17 ENSGT00950000183183.b.b #18 ENSGT00390000018509.a #19 ENSGT00390000014300 #20 ENSGT00940000153974.A #21 ENSGT00940000155520 #22 ENSGT00510000046986.c #23 ENSGT00940000162347 #24 ENSGT00940000162299 #25 ENSGT00760000119441 #26 ENSGT00940000162113 #27 ENSGT00950000182958.a.b.b.j.a.a.a.b #33 ENSGT00950000182958.a.b.b.j.a.a.a.a #35 ENSGT00940000158530.j ENSGT00940000157104 ENSGT00950000182962.a.a ENSGT01060000248564.b.a.b.a ENSGT00940000153284.a.h ENSGT00950000182922.a.a.b.c.c.b ENSGT00940000161208 ENSGT00940000155647 Mus ANCESTRAL SPECIES 17 ENSGT00940000158475 ENSGT00940000161824 ENSGT00510000047886.a #7 ENSGT00510000048486 #8 ENSGT00940000153560.b.b.a #9 ENSGT01060000248591.a.a.a.a #10 ENSGT00950000183188.A.b #11 ENSGT00390000017961 #12 ENSGT00940000158690 #13 ENSGT01050000244891.B #14 ENSGT00950000183183.b.a #17 ENSGT00950000183183.b.b #18 ENSGT00390000018509.a #19 ENSGT00390000014300 #20 ENSGT00940000153974.A #21 ENSGT00940000155520 #22 ENSGT00510000046986.c #23 ENSGT00940000162347 #24 ENSGT00940000162299 #25 ENSGT00760000119441 #26 ENSGT00940000162113 #27 ENSGT00950000182958.a.b.b.j.a.a.b ##35 ENSGT00950000182958.a.b.b.j.a.a.a.a.d #28 ENSGT00950000182958.a.b.b.j.a.a.a.b #33 ENSGT00950000182958.a.b.b.j.a.a.a.a.c #35 ENSGT00940000158530.j ENSGT00940000157104 ENSGT00950000182962.a.a ENSGT01060000248564.b.a.b.a ENSGT00940000153284.a.h ENSGT00950000182922.a.a.b.c.c.b Mus_A ANCESTRAL SPECIES 6 ENSGT00940000161824 ENSGT00510000047886.a #7 ENSGT00510000048486 #8 ENSGT00940000153560.b.b.a #9 ENSGT01060000248591.a.a.a.a #10 ENSGT00950000183188.A.b #11 ENSGT00390000017961 #12 ENSGT00940000158690 #13 ENSGT01050000244891.B #14 ENSGT00940000156012.q #16 ENSGT00950000183183.b.a #17 ENSGT00950000183183.b.b.w #18 ENSGT00390000018509.a #19 ENSGT00390000014300 #20 ENSGT00940000153974.A #21 ENSGT00940000155520 #22 ENSGT00510000046986.c #23 ENSGT00940000162347 #24 ENSGT00940000162299 #25 ENSGT00760000119441 #26 ENSGT00940000162113 #27 ENSGT00950000182958.a.b.b.j.a.a.b ##35 ENSGT00950000182958.a.b.b.j.a.a.a.a.d #28 ENSGT00950000182958.a.b.b.j.a.a.a.b #33 ENSGT00950000182958.a.b.b.j.a.a.a.a.c #35 ENSGT00940000158530.j ENSGT00940000157104 ENSGT00950000182962.a.a ENSGT01060000248564.b.a.b.a ENSGT00940000153284.a.h ENSGT00950000182922.a.a.b.c.c.b Mus_B ANCESTRAL SPECIES 4 ENSGT00940000161824 ENSGT00510000047886.a #7 ENSGT00510000048486 #8 ENSGT00940000153560.b.b.a #9 ENSGT01060000248591.a.a.a.a #10 ENSGT00950000183188.A.b #11 ENSGT00390000017961 #12 ENSGT00940000158690 #13 ENSGT01050000244891.B #14 ENSGT00940000156012.q #16 ENSGT00950000183183.b.a #17 ENSGT00950000183183.b.b.w #18 ENSGT00390000018509.a #19 ENSGT00390000014300 #20 ENSGT00940000153974.A #21 ENSGT00940000155520 #22 ENSGT00510000046986.c #23 ENSGT00940000162347 #24 ENSGT00940000162299 #25 ENSGT00760000119441 #26 ENSGT00940000162113 #27 ENSGT00950000182958.a.b.b.j.a.a.a.a.d #28 ENSGT00950000182958.a.b.b.j.a.a.a.b.j #29 ENSGT00950000182958.a.b.b.j.a.a.a.b.i.b #33 ENSGT00950000182958.a.b.b.j.a.a.a.a.c.a.a #34 ENSGT00940000158530.j ENSGT00940000157104 ENSGT00950000182962.a.a ENSGT01060000248564.b.a.b.a ENSGT00940000153284.a.h ENSGT00950000182922.a.a.b.c.c.b Mouse MODERN SPECIES 14 Tecpr1 (ENSMUSG00000066621) #7 Bri3 (ENSMUSG00000047843) #8 Baiap2l1 (ENSMUSG00000038859) #9 Nptx2 (ENSMUSG00000059991) #10 Tmem130 (ENSMUSG00000043388) #11 Trrap (ENSMUSG00000045482) #12 Smurf1 (ENSMUSG00000038780) #13 Kpna7 (ENSMUSG00000038770) #14 Gm4871 (ENSMUSG00000061707) #15 1700018F24Rik (ENSMUSG00000029620) #16 Arpc1a (ENSMUSG00000029621) #17 Arpc1b (ENSMUSG00000029622) #18 Pdap1 (ENSMUSG00000029623) #19 Bud31 (ENSMUSG00000038722) #20 Ptcd1 (ENSMUSG00000029624) #21 Cpsf4 (ENSMUSG00000029625) #22 Atp5j2 (ENSMUSG00000038690) #23 Zkscan14 (ENSMUSG00000029627) #24 Zkscan5 (ENSMUSG00000055991) #25 Zfp655 (ENSMUSG00000007812) #26 Zscan25 (ENSMUSG00000070420) #27 Cyp3a57 (ENSMUSG00000070419) #28 Cyp3a16 (ENSMUSG00000038656) #29 Cyp3a41b (ENSMUSG00000075552) #30 Cyp3a41a (ENSMUSG00000075551) #31 Cyp3a44 (ENSMUSG00000054417) #32 Cyp3a11 (ENSMUSG00000056035) #33 Cyp3a25 (ENSMUSG00000029630) #34 Cyp3a59 (ENSMUSG00000061292) #35 Gm5565 (ENSMUSG00000104752) #36 Gm6309 (ENSMUSG00000096798) #37 Mus_C ANCESTRAL SPECIES 4 ENSGT00940000161824 ENSGT00510000047886.a #7 ENSGT00510000048486 #8 ENSGT00940000153560.b.b.a #9 ENSGT01060000248591.a.a.a.a #10 ENSGT00950000183188.A.b #11 ENSGT00390000017961 #12 ENSGT00940000158690 #13 ENSGT01050000244891.B #14 ENSGT00940000156012.q #16 ENSGT00950000183183.b.a #17 ENSGT00950000183183.b.b.w #18 ENSGT00390000018509.a #19 ENSGT00390000014300 #20 ENSGT00940000153974.A #21 ENSGT00940000155520 #22 ENSGT00510000046986.c #23 ENSGT00940000162347 #24 ENSGT00940000162299 #25 ENSGT00760000119441 #26 ENSGT00940000162113 #27 ENSGT00940000155423.e.b ##37 ENSGT00940000158530.j ENSGT00940000157104 ENSGT00950000182962.a.a ENSGT01060000248564.b.a.b.a ENSGT00940000153284.a.h ENSGT00950000182922.a.a.b.c.c.b ENSGT00940000161208 ENSGT00940000155647 ENSGT00390000014424 spretus MODERN SPECIES 14 Lmtk2 (MGP_SPRETEiJ_G0028998) Bhlha15 (MGP_SPRETEiJ_G0028999) Tecpr1 (MGP_SPRETEiJ_G0029000) #7 Bri3 (MGP_SPRETEiJ_G0029001) #8 Baiap2l1 (MGP_SPRETEiJ_G0029002) #9 Nptx2 (MGP_SPRETEiJ_G0029003) #10 Tmem130 (MGP_SPRETEiJ_G0029004) #11 Trrap (MGP_SPRETEiJ_G0029005) #12 Smurf1 (MGP_SPRETEiJ_G0029006) #13 Kpna7 (MGP_SPRETEiJ_G0029007) #14 Arpc1a (MGP_SPRETEiJ_G0029008) #17 MGP_SPRETEiJ_G0029009 #18 Pdap1 (MGP_SPRETEiJ_G0029010) #19 Bud31 (MGP_SPRETEiJ_G0029011) #20 Ptcd1 (MGP_SPRETEiJ_G0029012) #21 Cpsf4 (MGP_SPRETEiJ_G0029013) #22 Atp5j2 (MGP_SPRETEiJ_G0029014) #23 Zkscan14 (MGP_SPRETEiJ_G0029015) #24 Zkscan5 (MGP_SPRETEiJ_G0029016) #25 Zfp655 (MGP_SPRETEiJ_G0029017) #26 Zscan25 (MGP_SPRETEiJ_G0029018) #27 MGP_SPRETEiJ_G0029019 #34 MGP_SPRETEiJ_G0029020 #34 MGP_SPRETEiJ_G0029021 #34 Rnf6 (MGP_SPRETEiJ_G0029022) Cdk8 (MGP_SPRETEiJ_G0029023) Wasf3 (MGP_SPRETEiJ_G0029024) Gpr12 (MGP_SPRETEiJ_G0029025) Usp12 (MGP_SPRETEiJ_G0029026) MGP_SPRETEiJ_G0029027 Rasl11a (MGP_SPRETEiJ_G0029028) Steppe mouse MODERN SPECIES 3370 ENSMSIG00000029259 Baiap2l1 (ENSMSIG00000029242) #9 ENSMSIG00000029239 Nptx2 (ENSMSIG00000029233) #10 Tmem130 (ENSMSIG00000029228) #11 Trrap (ENSMSIG00000029078) #12 Smurf1 (ENSMSIG00000029028) #13 ENSMSIG00000029026 #14 ENSMSIG00000029019 #16 Arpc1a (ENSMSIG00000029008) #17 ENSMSIG00000029006 Arpc1b (ENSMSIG00000028992) #18 Pdap1 (ENSMSIG00000028982) #19 Bud31 (ENSMSIG00000028973) #20 Ptcd1 (ENSMSIG00000028962) #21 Cpsf4 (ENSMSIG00000028934) #22 Atp5j2 (ENSMSIG00000028928) #23 ENSMSIG00000028921 #24 Zkscan5 (ENSMSIG00000028906) #25 Zscan25 (ENSMSIG00000028875) #27 Ryukyu mouse MODERN SPECIES 14 Tecpr1 (MGP_CAROLIEiJ_G0027997) #7 Bri3 (MGP_CAROLIEiJ_G0027998) #8 Baiap2l1 (MGP_CAROLIEiJ_G0027999) #9 Nptx2 (MGP_CAROLIEiJ_G0028000) #10 Tmem130 (MGP_CAROLIEiJ_G0028001) #11 Trrap (MGP_CAROLIEiJ_G0028002) #12 Smurf1 (MGP_CAROLIEiJ_G0028003) #13 Kpna7 (MGP_CAROLIEiJ_G0028004) #14 MGP_CAROLIEiJ_G0028005 #16 MGP_CAROLIEiJ_G0028006 #16 Arpc1a (MGP_CAROLIEiJ_G0028007) #17 Arpc1b (MGP_CAROLIEiJ_G0028008) #18 Pdap1 (MGP_CAROLIEiJ_G0028009) #19 Bud31 (MGP_CAROLIEiJ_G0028010) #20 Ptcd1 (MGP_CAROLIEiJ_G0028011) #21 Cpsf4 (MGP_CAROLIEiJ_G0028012) #22 Atp5j2 (MGP_CAROLIEiJ_G0028013) #23 Zkscan14 (MGP_CAROLIEiJ_G0028014) #24 Zkscan5 (MGP_CAROLIEiJ_G0028015) #25 Zfp655 (MGP_CAROLIEiJ_G0028016) #26 MGP_CAROLIEiJ_G0028017 #27 MGP_CAROLIEiJ_G0028018 ##35 MGP_CAROLIEiJ_G0028020 ##37 MGP_CAROLIEiJ_G0028022 ##37 MGP_CAROLIEiJ_G0028021 ##37 MGP_CAROLIEiJ_G0028023 ##37 Rnf6 (MGP_CAROLIEiJ_G0028024) Cdk8 (MGP_CAROLIEiJ_G0028025) Wasf3 (MGP_CAROLIEiJ_G0028026) Gpr12 (MGP_CAROLIEiJ_G0028027) Usp12 (MGP_CAROLIEiJ_G0028028) Shrew mouse MODERN SPECIES 15 Lmtk2 (MGP_PahariEiJ_G0024566) Bhlha15 (MGP_PahariEiJ_G0024567) Tecpr1 (MGP_PahariEiJ_G0024568) #7 Bri3 (MGP_PahariEiJ_G0024569) #8 Baiap2l1 (MGP_PahariEiJ_G0024570) #9 Nptx2 (MGP_PahariEiJ_G0024571) #10 Tmem130 (MGP_PahariEiJ_G0024572) #11 Trrap (MGP_PahariEiJ_G0024573) #12 Smurf1 (MGP_PahariEiJ_G0024574) #13 Kpna7 (MGP_PahariEiJ_G0024575) #14 MGP_PahariEiJ_G0024576 #17 Arpc1b (MGP_PahariEiJ_G0024577) #18 Pdap1 (MGP_PahariEiJ_G0024578) #19 Bud31 (MGP_PahariEiJ_G0024579) #20 Ptcd1 (MGP_PahariEiJ_G0024580) #21 Cpsf4 (MGP_PahariEiJ_G0024581) #22 Atp5j2 (MGP_PahariEiJ_G0024582) #23 Zkscan14 (MGP_PahariEiJ_G0024583) #24 Zkscan5 (MGP_PahariEiJ_G0024584) #25 Zfp655 (MGP_PahariEiJ_G0024585) #26 Zscan25 (MGP_PahariEiJ_G0024586) #27 MGP_PahariEiJ_G0024587 #35 MGP_PahariEiJ_G0024589 #35 MGP_PahariEiJ_G0024588 #35 Rnf6 (MGP_PahariEiJ_G0024590) Cdk8 (MGP_PahariEiJ_G0024591) Wasf3 (MGP_PahariEiJ_G0024592) Gpr12 (MGP_PahariEiJ_G0024593) Usp12 (MGP_PahariEiJ_G0024594) MGP_PahariEiJ_G0024595 Rasl11a (MGP_PahariEiJ_G0024596) Rat DUPLICATION Rat DUPLICATION Rat MODERN SPECIES 3 Tecpr1 (ENSRNOG00000001010) #7 Bri3 (ENSRNOG00000001009) #8 Baiap2l1 (ENSRNOG00000001007) #9 RGD1565131 (ENSRNOG00000025212) LOC100360200 (ENSRNOG00000025217) #22 Nptx2 (ENSRNOG00000001006) #10 Tmem130 (ENSRNOG00000025235) #11 Trrap (ENSRNOG00000025244) #12 Smurf1 (ENSRNOG00000000999) #13 Kpna7 (ENSRNOG00000042296) #14 Arpc1a (ENSRNOG00000000996) #17 Arpc1b (ENSRNOG00000000991) #18 Pdap1 (ENSRNOG00000000990) #19 Bud31 (ENSRNOG00000000989) #20 Ptcd1 (ENSRNOG00000000987) #21 Cpsf4 (ENSRNOG00000000985) #22 Atp5mf (ENSRNOG00000027049) #23 Zfp394 (ENSRNOG00000000983) #24 Zkscan5 (ENSRNOG00000059552) #25 Zfp655 (ENSRNOG00000060129) #26 Zscan25 (ENSRNOG00000042213) #27 Cyp3a23-3a1 (ENSRNOG00000067532) #33 ENSRNOG00000062654 #35 ENSRNOG00000063231 #33 Cyp3a23-3a1 (ENSRNOG00000062027) #33 Cyp3a2 (ENSRNOG00000032560) #33 Cyp3a73 (ENSRNOG00000047745) #33 Cyp3a73 (ENSRNOG00000000978) #33 Cyp3a18 (ENSRNOG00000000969) #35 Rnf6 (ENSRNOG00000000968) AABR07035338.1 (ENSRNOG00000039819) Rat MODERN SPECIES 3 Zfp655 (ENSRNOG00000060129) #26 Zkscan5 (ENSRNOG00000059552) #25 Zfp394 (ENSRNOG00000000983) #24 Atp5mf (ENSRNOG00000027049) #23 Cpsf4 (ENSRNOG00000000985) #22 Ptcd1 (ENSRNOG00000000987) #21 Bud31 (ENSRNOG00000000989) #20 Pdap1 (ENSRNOG00000000990) #19 Arpc1b (ENSRNOG00000000991) #18 Arpc1a (ENSRNOG00000000996) #17 Kpna7 (ENSRNOG00000042296) #14 Smurf1 (ENSRNOG00000000999) #13 Trrap (ENSRNOG00000025244) #12 Tmem130 (ENSRNOG00000025235) #11 Nptx2 (ENSRNOG00000001006) #10 LOC100360200 (ENSRNOG00000025217) #22 RGD1565131 (ENSRNOG00000025212) Baiap2l1 (ENSRNOG00000001007) #9 Bri3 (ENSRNOG00000001009) #8 Tecpr1 (ENSRNOG00000001010) #7 Bhlha15 (ENSRNOG00000025164) Lmtk2 (ENSRNOG00000025155) Ocm (ENSRNOG00000001031) Ccz1b (ENSRNOG00000001032) Rsph10b (ENSRNOG00000001036) Pms2 (ENSRNOG00000001040) Aimp2 (ENSRNOG00000001044) Eif2ak1 (ENSRNOG00000001050) Ankrd61 (ENSRNOG00000001048) Usp42 (ENSRNOG00000001059) Cyth3 (ENSRNOG00000001065) Rat MODERN SPECIES 46 Plp2 (ENSRNOG00000039496) Prickle3 (ENSRNOG00000022417) Syp (ENSRNOG00000059720) Cacna1f (ENSRNOG00000010348) Ccdc22 (ENSRNOG00000010846) Foxp3 (ENSRNOG00000011702) Ppp1r3f (ENSRNOG00000068767) ENSRNOG00000066758 ENSRNOG00000065488 AABR07037203.1 (ENSRNOG00000028611) Usp27x (ENSRNOG00000002844) Clcn5 (ENSRNOG00000002862) Akap4 (ENSRNOG00000002921) Ccnb3 (ENSRNOG00000002951) Dgkk (ENSRNOG00000039323) Cpsf4-ps1 (ENSRNOG00000062241) #22 Shroom4 (ENSRNOG00000002959) AABR07037243.1 (ENSRNOG00000002975) Bmp15 (ENSRNOG00000002984) Nudt11 (ENSRNOG00000046053) Ezhip (ENSRNOG00000039305) Smptb (ENSRNOG00000028033) Smptb (ENSRNOG00000066859) ENSRNOG00000067767 LOC120099275 (ENSRNOG00000030417) LOC302576 (ENSRNOG00000066885) Mycs (ENSRNOG00000003085) ENSRNOG00000063942 ENSRNOG00000069398 RGD1565862 (ENSRNOG00000068201) Spin2b (ENSRNOG00000062360) Cricetidae ANCESTRAL SPECIES 27 ENSGT00940000158475 ENSGT00940000161824 ENSGT00510000047886.a #7 ENSGT00510000048486 #8 ENSGT00940000153560.b.b.a #9 ENSGT01060000248591.a.a.a.a #10 ENSGT00950000183188.A.b #11 ENSGT00390000017961 #12 ENSGT00940000158690 #13 ENSGT01050000244891.B #14 ENSGT00950000183183.b.a #17 ENSGT00950000183183.b.b #18 ENSGT00390000018509.a #19 ENSGT00390000014300 #20 ENSGT00940000153974.A #21 ENSGT00940000155520 #22 ENSGT00510000046986.c #23 ENSGT00940000162347 #24 ENSGT00940000162299 #25 ENSGT00760000119441 #26 ENSGT00940000162113 #27 ENSGT00950000182958.a.b.b.j.a.a.a.b #33 ENSGT00950000182958.a.b.b.j.a.a.a.a #35 ENSGT00940000158530.j.a ENSGT00940000157104 ENSGT00950000182962.a.a ENSGT01060000248564.b.a.b.a ENSGT00940000153284.a.h ENSGT00950000182922.a.a.b.d ENSGT00940000161208 ENSGT00940000155647 Cricetidae_B ANCESTRAL SPECIES 46 ENSGT00940000158475 ENSGT00940000161824 ENSGT00510000047886.a #7 ENSGT00510000048486 #8 ENSGT00940000153560.b.b.a #9 ENSGT01060000248591.a.a.a.a #10 ENSGT00950000183188.A.b #11 ENSGT00390000017961 #12 ENSGT00940000158690 #13 ENSGT01050000244891.B #14 ENSGT00950000183183.b.a #17 ENSGT00950000183183.b.b #18 ENSGT00390000018509.a #19 ENSGT00390000014300 #20 ENSGT00940000153974.A #21 ENSGT00940000155520 #22 ENSGT00510000046986.c #23 ENSGT00940000162347 #24 ENSGT00940000162299 #25 ENSGT00760000119441 #26 Northern American deer mouse MODERN SPECIES 15 Bhlha15 (ENSPEMG00000009777) Tecpr1 (ENSPEMG00000002374) #7 Bri3 (ENSPEMG00000009259) #8 Baiap2l1 (ENSPEMG00000016921) #9 Nptx2 (ENSPEMG00000004530) #10 ENSPEMG00000030777 Tmem130 (ENSPEMG00000017312) #11 Trrap (ENSPEMG00000007905) #12 Smurf1 (ENSPEMG00000004784) #13 Kpna7 (ENSPEMG00000017218) #14 Arpc1a (ENSPEMG00000013996) #17 Arpc1b (ENSPEMG00000017147) #18 ENSPEMG00000015747 #19 Bud31 (ENSPEMG00000010947) #20 Ptcd1 (ENSPEMG00000013736) #21 Cpsf4 (ENSPEMG00000004508) #22 Atp5j2 (ENSPEMG00000013672) #23 Zkscan14 (ENSPEMG00000011797) #24 Zkscan5 (ENSPEMG00000010963) #25 ENSPEMG00000011222 ENSPEMG00000030363 ENSPEMG00000029204 #33 ENSPEMG00000031372 ENSPEMG00000026224 #33 Rxfp2 (ENSPEMG00000018554) B3glct (ENSPEMG00000015898) ENSPEMG00000025164 Hsph1 (ENSPEMG00000009941) Wdr95 (ENSPEMG00000016428) Tex26 (ENSPEMG00000019024) Medag (ENSPEMG00000000331) Prairie vole MODERN SPECIES 110 Bud31 (ENSMOCG00000017115) #20 ENSMOCG00000016192 Cpsf4 (ENSMOCG00000014901) #22 Atp5j2 (ENSMOCG00000003786) #23 Zkscan5 (ENSMOCG00000011909) #25 Zfp655 (ENSMOCG00000019962) #26 Pdap1 (ENSMOCG00000015800) #19 Arpc1b (ENSMOCG00000010471) #18 Arpc1a (ENSMOCG00000020844) #17 Kpna7 (ENSMOCG00000012853) #14 Smurf1 (ENSMOCG00000010176) #13 Trrap (ENSMOCG00000000272) #12 Tmem130 (ENSMOCG00000015764) #11 Nptx2 (ENSMOCG00000011501) #10 Baiap2l1 (ENSMOCG00000002763) #9 Bri3 (ENSMOCG00000007653) #8 Tecpr1 (ENSMOCG00000021771) #7 Lmtk2 (ENSMOCG00000019505) Cricetinae ANCESTRAL SPECIES 19 ENSGT00940000158475 ENSGT00940000161824 ENSGT00510000047886.a #7 ENSGT00510000048486 #8 ENSGT00940000153560.b.b.a #9 ENSGT01060000248591.a.a.a.a #10 ENSGT00950000183188.A.b #11 ENSGT00390000017961 #12 ENSGT00940000158690 #13 ENSGT01050000244891.B #14 ENSGT00950000183183.b.a #17 ENSGT00950000183183.b.b #18 ENSGT00390000018509.a #19 ENSGT00390000014300 #20 ENSGT00940000153974.A #21 ENSGT00940000155520 #22 ENSGT00510000046986.c #23 ENSGT00940000162347 #24 ENSGT00940000162299 #25 ENSGT00760000119441 #26 ENSGT00950000182958.a.b.b.j.a.a.a.b.b #33 ENSGT00940000162113 #27 ENSGT00950000182958.a.b.b.j.a.a.a.b.a #33 ENSGT00950000182958.a.b.b.j.a.a.a.a #35 ENSGT00940000158530.j.a ENSGT00940000157104 ENSGT00950000182962.a.a ENSGT01060000248564.b.a.b.a ENSGT00940000153284.a.h ENSGT00950000182922.a.a.b.d ENSGT00940000161208 Golden Hamster MODERN SPECIES 712 Lmtk2 (ENSMAUG00000014353) Tecpr1 (ENSMAUG00000008072) #7 Bri3 (ENSMAUG00000000701) #8 Baiap2l1 (ENSMAUG00000008280) #9 Nptx2 (ENSMAUG00000017629) #10 ENSMAUG00000000660 Tmem130 (ENSMAUG00000020273) #11 Trrap (ENSMAUG00000015855) #12 Smurf1 (ENSMAUG00000000511) #13 Kpna7 (ENSMAUG00000019165) #14 ENSMAUG00000014235 #17 ENSMAUG00000003299 #18 Pdap1 (ENSMAUG00000011742) #19 Bud31 (ENSMAUG00000016405) #20 ENSMAUG00000011008 Cpsf4 (ENSMAUG00000021253) #22 Atp5j2 (ENSMAUG00000018419) #23 Zkscan5 (ENSMAUG00000014532) #25 Zscan25 (ENSMAUG00000012364) #27 ENSMAUG00000013270 #33 ENSMAUG00000011782 #35 Rnf6 (ENSMAUG00000014438) ENSMAUG00000013390 Wasf3 (ENSMAUG00000004464) Upper Galilee mountains blind mole rat MODERN SPECIES 1850 Bhlha15 (ENSNGAG00000011836) Tecpr1 (ENSNGAG00000013589) #7 Bri3 (ENSNGAG00000013902) #8 Baiap2l1 (ENSNGAG00000018325) #9 ENSNGAG00000014139 Nptx2 (ENSNGAG00000013356) #10 Tmem130 (ENSNGAG00000017786) #11 Trrap (ENSNGAG00000022892) #12 Smurf1 (ENSNGAG00000008962) #13 Kpna7 (ENSNGAG00000021193) #14 ENSNGAG00000018383 #17 Arpc1b (ENSNGAG00000015329) #18 Pdap1 (ENSNGAG00000017370) #19 ENSNGAG00000002694 #20 ENSNGAG00000015871 Cpsf4 (ENSNGAG00000001567) #22 ENSNGAG00000018916 #23 Zkscan14 (ENSNGAG00000023424) #24 ENSNGAG00000023612 Zkscan5 (ENSNGAG00000017855) #25 Zfp655 (ENSNGAG00000008217) #26 Zscan25 (ENSNGAG00000021657) #27 ENSNGAG00000010294 #33 ENSNGAG00000000778 #35 Lesser Egyptian jerboa MODERN SPECIES 250 Eif3b (ENSJJAG00000014658) Trrap (ENSJJAG00000015572) #12 Smurf1 (ENSJJAG00000011991) #13 Kpna7 (ENSJJAG00000010612) #14 ENSJJAG00000011076 #17 Arpc1b (ENSJJAG00000010687) #18 ENSJJAG00000008855 #19 Bud31 (ENSJJAG00000007925) #20 Ptcd1 (ENSJJAG00000000319) #21 Cpsf4 (ENSJJAG00000019426) #22 Atp5j2 (ENSJJAG00000018319) #23 Zkscan14 (ENSJJAG00000017218) #24 Zkscan5 (ENSJJAG00000017033) #25 Kangaroo rat MODERN SPECIES 387 Lmtk2 (ENSDORG00000003934) Bhlha15 (ENSDORG00000026874) Tecpr1 (ENSDORG00000003936) #7 ENSDORG00000027487 Baiap2l1 (ENSDORG00000007704) #9 Nptx2 (ENSDORG00000002048) #10 Tmem130 (ENSDORG00000008927) #11 Trrap (ENSDORG00000016733) #12 Smurf1 (ENSDORG00000001289) #13 Kpna7 (ENSDORG00000001481) #14 ENSDORG00000016059 #17 Arpc1b (ENSDORG00000000737) #18 Pdap1 (ENSDORG00000000738) #19 ENSDORG00000000739 #20 Ptcd1 (ENSDORG00000000740) #21 Cpsf4 (ENSDORG00000000742) #22 Atp5j2 (ENSDORG00000000743) #23 Zkscan14 (ENSDORG00000006843) #24 ENSDORG00000027431 ENSDORG00000029957 Zscan25 (ENSDORG00000024526) #27 ENSDORG00000030120 ENSDORG00000012448 ##35 ENSDORG00000027377 ##35 Gjc3 (ENSDORG00000004757) Zkscan1 (ENSDORG00000025152) Zscan21 (ENSDORG00000009833) Zfp113 (ENSDORG00000000945) Cops6 (ENSDORG00000024208) ENSDORG00000000946 Ap4m1 (ENSDORG00000019826) Rodentia_A ANCESTRAL SPECIES 10 ENSGT00940000161824 ENSGT00510000047886.a #7 ENSGT00510000048486 #8 ENSGT00940000153560.b.b.a #9 ENSGT01060000248591.a.a.a.a #10 ENSGT00950000183188.A.b #11 ENSGT00390000017961 #12 ENSGT00940000158690 #13 ENSGT01050000244891.B #14 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #17 ENSGT00950000183183.b.b #18 ENSGT00390000018509.a #19 ENSGT00390000014300 #20 ENSGT00940000153974.A #21 ENSGT00940000155520 #22 ENSGT00510000046986 #23 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #24 ENSGT00940000162299 #25 ENSGT00760000119441 #26 ENSGT00510000055200 ENSGT00940000162113 #27 ENSGT00950000182958.a.b.b.j.a.a.b ##35 ENSGT01090000260018.B.b ENSGT01090000260005.a.a.a.a ENSGT01100000263517.b.d.m.b.a.a ENSGT00940000161592 ENSGT00940000161607 ENSGT00940000153104.e.b.b Hystricomorpha ANCESTRAL SPECIES 17 ENSGT00940000158475 ENSGT00940000161824 ENSGT00510000047886.a #7 ENSGT00510000048486 #8 ENSGT00940000153560.b.b.a #9 ENSGT01060000248591.a.a.a.a #10 ENSGT00950000183188.A.b #11 ENSGT00390000017961 #12 ENSGT00940000158690 #13 ENSGT01050000244891.B #14 ENSGT00950000183183.b.a #17 ENSGT00950000183183.b.b #18 ENSGT00390000018509.a #19 ENSGT00390000014300 #20 ENSGT00940000153974.A #21 ENSGT00940000155520 #22 ENSGT00510000046986 #23 ENSGT00940000162347 #24 ENSGT00940000162299 #25 ENSGT00760000119441 #26 ENSGT00510000055200 ENSGT00940000162113 #27 ENSGT00950000182958.a.b.b.j.a.a.a.a #35 ENSGT00950000182958.a.b.b.j.a.a.b ##35 ENSGT01090000260005.a.a.a.a ENSGT01100000263517.b.d.m.b.a.a ENSGT00940000161592 ENSGT00940000161607 ENSGT00940000153104.e.b.b ENSGT00950000183073.a.a.b ENSGT01050000244824.C Hystricomorpha_a ANCESTRAL SPECIES 16 ENSGT00940000158475 ENSGT00940000161824 ENSGT00510000047886.a #7 ENSGT00510000048486 #8 ENSGT00940000153560.b.b.a #9 ENSGT01060000248591.a.a.a.a #10 ENSGT00950000183188.A.b #11 ENSGT00390000017961 #12 ENSGT00940000158690 #13 ENSGT01050000244891.B #14 ENSGT00950000183183.b.a #17 ENSGT00950000183183.b.b #18 ENSGT00390000018509.a #19 ENSGT00390000014300 #20 ENSGT00940000153974.A #21 ENSGT00940000155520 #22 ENSGT00510000046986 #23 ENSGT00940000162347 #24 ENSGT00940000162299 #25 ENSGT00760000119441 #26 ENSGT00510000055200 ENSGT00940000162113 #27 ENSGT00950000182958.a.b.b.j.a.a.a.a #35 ENSGT00950000182958.a.b.b.j.a.a.b ##35 ENSGT01090000260005.a.a.a.a ENSGT01100000263517.b.d.m.b.a.a ENSGT00940000161592 ENSGT00940000161607 ENSGT00940000153104.e.b.b ENSGT00950000183073.a.a.b ENSGT01050000244824.C Guinea pig MODERN SPECIES 30 LMTK2 (ENSCPOG00000009408) BHLHA15 (ENSCPOG00000033368) TECPR1 (ENSCPOG00000010430) #7 BRI3 (ENSCPOG00000025281) #8 BAIAP2L1 (ENSCPOG00000009274) #9 NPTX2 (ENSCPOG00000012135) #10 TMEM130 (ENSCPOG00000010669) #11 TRRAP (ENSCPOG00000007298) #12 SMURF1 (ENSCPOG00000000124) #13 KPNA7 (ENSCPOG00000014326) #14 ENSCPOG00000001777 #17 ARPC1B (ENSCPOG00000020413) #18 PDAP1 (ENSCPOG00000023217) #19 BUD31 (ENSCPOG00000001779) #20 PTCD1 (ENSCPOG00000001780) #21 CPSF4 (ENSCPOG00000001783) #22 ENSCPOG00000034651 ZNF394 (ENSCPOG00000013321) #24 ZKSCAN5 (ENSCPOG00000032578) #25 ZNF655 (ENSCPOG00000032275) #26 ZSCAN25 (ENSCPOG00000031211) #27 Cyp3a14 (ENSCPOG00000001589) #35 ENSCPOG00000024937 #35 ENSCPOG00000012976 #35 ENSCPOG00000020375 ##35 ENSCPOG00000022315 ##35 GJC3 (ENSCPOG00000012551) AZGP1 (ENSCPOG00000030246) ZKSCAN1 (ENSCPOG00000005770) ZSCAN21 (ENSCPOG00000015351) ZNF3 (ENSCPOG00000010860) Hystricomorpha_b ANCESTRAL SPECIES 55 ENSGT00940000158475 ENSGT00940000161824 ENSGT00510000047886.a #7 ENSGT00510000048486 #8 ENSGT00940000153560.b.b.a #9 ENSGT01060000248591.a.a.a.a #10 ENSGT00950000183188.A.b #11 ENSGT00390000017961 #12 ENSGT00940000158690 #13 ENSGT01050000244891.B #14 ENSGT00950000183183.b.a #17 ENSGT00950000183183.b.b #18 ENSGT00390000018509.a #19 ENSGT00390000014300 #20 ENSGT00940000153974.A #21 ENSGT00940000155520 #22 ENSGT00510000046986 #23 ENSGT00940000162347 #24 ENSGT00940000162299 #25 ENSGT00760000119441 #26 ENSGT00510000055200 ENSGT00940000162113 #27 Degu DUPLICATION Degu DUPLICATION Degu MODERN SPECIES 57 CDK15 (ENSODEG00000009574) FZD7 (ENSODEG00000010108) ENSODEG00000012987 NOP58 (ENSODEG00000010151) BMPR2 (ENSODEG00000011132) ENSODEG00000010517 FAM117B (ENSODEG00000010132) ENSODEG00000010913 ENSODEG00000010403 ENSODEG00000009897 ENSODEG00000011455 WDR12 (ENSODEG00000011602) CARF (ENSODEG00000011312) NBEAL1 (ENSODEG00000010440) CYP20A1 (ENSODEG00000010253) ENSODEG00000009779 #22 ABI2 (ENSODEG00000009457) ENSODEG00000013477 CTLA4 (ENSODEG00000009327) ENSODEG00000010295 ICOS (ENSODEG00000011327) ENSODEG00000009131 ENSODEG00000010021 PARD3B (ENSODEG00000012523) ENSODEG00000010455 INO80D (ENSODEG00000009769) ENSODEG00000019630 ENSODEG00000008842 ENSODEG00000009030 ENSODEG00000008974 ENSODEG00000010229 Degu MODERN SPECIES 49 ENSODEG00000018270 CTNND2 (ENSODEG00000018402) DAP (ENSODEG00000018321) ANKRD33B (ENSODEG00000018446) ROPN1L (ENSODEG00000018356) MARCHF6 (ENSODEG00000018354) ENSODEG00000018315 CMBL (ENSODEG00000018386) ENSODEG00000018260 ATPSCKMT (ENSODEG00000018372) ENSODEG00000018296 SEMA5A (ENSODEG00000018380) ENSODEG00000018330 FASTKD3 (ENSODEG00000018378) ADCY2 (ENSODEG00000018279) ENSODEG00000018283 #22 TENT4A (ENSODEG00000018357) SRD5A1 (ENSODEG00000018442) NSUN2 (ENSODEG00000018305) ENSODEG00000018291 UBE2QL1 (ENSODEG00000018284) MED10 (ENSODEG00000018285) ENSODEG00000018433 ENSODEG00000018278 ADAMTS16 (ENSODEG00000018405) IRX1 (ENSODEG00000018349) IRX2 (ENSODEG00000018250) IRX4 (ENSODEG00000018434) NDUFS6 (ENSODEG00000018267) ENSODEG00000018308 LPCAT1 (ENSODEG00000018339) Degu MODERN SPECIES 72 ENSODEG00000011251 ENSODEG00000011077 LMTK2 (ENSODEG00000012233) TECPR1 (ENSODEG00000011578) #7 BRI3 (ENSODEG00000010514) #8 BAIAP2L1 (ENSODEG00000010504) #9 ENSODEG00000012635 NPTX2 (ENSODEG00000011311) #10 TMEM130 (ENSODEG00000010706) #11 TRRAP (ENSODEG00000013196) #12 SMURF1 (ENSODEG00000012098) #13 ENSODEG00000010891 #17 ARPC1B (ENSODEG00000011865) #18 ENSODEG00000012197 #19 BUD31 (ENSODEG00000011226) #20 ENSODEG00000011181 #22 ENSODEG00000012299 ZKSCAN5 (ENSODEG00000012014) #25 ZNF655 (ENSODEG00000011702) #26 ZSCAN25 (ENSODEG00000012099) #27 Long-tailed chinchilla MODERN SPECIES 167 LMTK2 (ENSCLAG00000005806) BHLHA15 (ENSCLAG00000006581) TECPR1 (ENSCLAG00000006941) #7 BRI3 (ENSCLAG00000012095) #8 BAIAP2L1 (ENSCLAG00000013528) #9 NPTX2 (ENSCLAG00000013930) #10 TMEM130 (ENSCLAG00000006489) #11 TRRAP (ENSCLAG00000007110) #12 SMURF1 (ENSCLAG00000005211) #13 KPNA7 (ENSCLAG00000006067) #14 ARPC1A (ENSCLAG00000006964) #17 ARPC1B (ENSCLAG00000006996) #18 PDAP1 (ENSCLAG00000007628) #19 BUD31 (ENSCLAG00000008079) #20 PTCD1 (ENSCLAG00000006354) #21 CPSF4 (ENSCLAG00000007050) #22 ATP5MF (ENSCLAG00000004636) #23 ZNF394 (ENSCLAG00000005098) #24 ZKSCAN5 (ENSCLAG00000006450) #25 ZNF655 (ENSCLAG00000012856) #26 TMEM225B (ENSCLAG00000007073) ZSCAN25 (ENSCLAG00000006740) #27 Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES ENSHGLG00000032492 BAIAP2L1 (ENSHGLG00000017707) #9 ENSHGLG00000044552 ENSHGLG00000007737 #10 ENSHGLG00000042548 TMEM130 (ENSHGLG00000008380) #11 TRRAP (ENSHGLG00000013805) #12 SMURF1 (ENSHGLG00000006003) #13 ENSHGLG00000009628 #14 ENSHGLG00000043221 ENSHGLG00000017246 #17 ARPC1B (ENSHGLG00000017816) #18 PDAP1 (ENSHGLG00000013857) #19 ENSHGLG00000018123 #20 PTCD1 (ENSHGLG00000017621) #21 ENSHGLG00000017150 #22 ENSHGLG00000006068 #23 ENSHGLG00000006453 ZNF394 (ENSHGLG00000033544) #24 ZKSCAN5 (ENSHGLG00000009175) #25 ZNF655 (ENSHGLG00000005530) #26 ENSHGLG00000040144 #27 ENSHGLG00000033148 ENSHGLG00000038153 ENSHGLG00000041246 ENSHGLG00000000859 HS3ST5 (ENSHGLG00000045242) ENSHGLG00000001055 ENSHGLG00000045785 ENSHGLG00000038613 ENSHGLG00000048576 Naked mole-rat female MODERN SPECIES 13 ENSHGLG00000009795 ENSHGLG00000018481 ENSHGLG00000039218 ENSHGLG00000042606 SULF1 (ENSHGLG00000015701) SLCO5A1 (ENSHGLG00000007007) ENSHGLG00000047939 PRDM14 (ENSHGLG00000016615) NCOA2 (ENSHGLG00000016603) ENSHGLG00000035853 ENSHGLG00000021028 ENSHGLG00000047012 TRAM1 (ENSHGLG00000008235) ENSHGLG00000006207 XKR9 (ENSHGLG00000033679) ENSHGLG00000018393 #22 EYA1 (ENSHGLG00000019347) ENSHGLG00000038455 MSC (ENSHGLG00000040745) TRPA1 (ENSHGLG00000017879) KCNB2 (ENSHGLG00000017013) ENSHGLG00000021368 Terf1 (ENSHGLG00000013062) SBSPON (ENSHGLG00000044318) RPL7 (ENSHGLG00000017000) RDH10 (ENSHGLG00000013673) STAU2 (ENSHGLG00000014888) UBE2W (ENSHGLG00000016745) TCEB1 (ENSHGLG00000042986) TMEM70 (ENSHGLG00000042950) LY96 (ENSHGLG00000017254) Sciuridae ANCESTRAL SPECIES 9 ENSGT00940000161824 ENSGT00510000047886.a #7 ENSGT00510000048486 #8 ENSGT00940000153560.b.b.a #9 ENSGT01060000248591.a.a.a.a #10 ENSGT00950000183188.A.b #11 ENSGT00390000017961 #12 ENSGT00940000158690 #13 ENSGT01050000244891.B #14 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #17 ENSGT00950000183183.b.b #18 ENSGT00390000018509.a #19 ENSGT00390000014300.ib #20 ENSGT00940000153974.A #21 ENSGT00940000155520 #22 ENSGT00510000046986.e.a #23 ENSGT00940000154488.A.b.a.b ENSGT00940000163495 ENSGT00940000162347 #24 ENSGT00940000162299 #25 ENSGT00760000119441 #26 ENSGT00510000055200 ENSGT00940000162113 #27 ENSGT00950000182958.a.b.b.j.a.a.b ##35 ENSGT01090000260018.B.b ENSGT01090000260005.a.a.a.a ENSGT01100000263517.b.d.m.b.a.a ENSGT00940000161592 ENSGT00940000161607 ENSGT00940000153104.e.b.b Eurasian red squirrel MODERN SPECIES 9 TECPR1 (ENSSVLG00005020896) #7 ENSSVLG00005020936 BRI3 (ENSSVLG00005020971) #8 BAIAP2L1 (ENSSVLG00005021009) #9 NPTX2 (ENSSVLG00005021028) #10 TMEM130 (ENSSVLG00005021101) #11 TRRAP (ENSSVLG00005021317) #12 SMURF1 (ENSSVLG00005021442) #13 KPNA7 (ENSSVLG00005021513) #14 ENSSVLG00005021650 ENSSVLG00005021905 #17 ARPC1B (ENSSVLG00005021982) #18 ENSSVLG00005022058 #19 BUD31 (ENSSVLG00005022102) #20 PTCD1 (ENSSVLG00005022169) #21 CPSF4 (ENSSVLG00005022210) #22 ENSSVLG00005022299 #23 ENSSVLG00005022403 ZNF789 (ENSSVLG00005022423) ZNF394 (ENSSVLG00005022501) #24 ZKSCAN5 (ENSSVLG00005022583) #25 ZNF655 (ENSSVLG00005022626) #26 TMEM225B (ENSSVLG00005022717) ZSCAN25 (ENSSVLG00005022756) #27 ENSSVLG00005022805 ##35 ENSSVLG00005023015 ##35 OR2AE1 (ENSSVLG00005023354) GJC3 (ENSSVLG00005023365) AZGP1 (ENSSVLG00005023385) ZKSCAN1 (ENSSVLG00005023421) ZSCAN21 (ENSSVLG00005023456) Marmotini ANCESTRAL SPECIES 85 ENSGT00940000161824 ENSGT00510000047886.a #7 ENSGT00510000048486 #8 ENSGT00940000153560.b.b.a #9 ENSGT01060000248591.a.a.a.a #10 ENSGT00950000183188.A.b #11 ENSGT00390000017961 #12 ENSGT00940000158690 #13 ENSGT01050000244891.B #14 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #17 ENSGT00950000183183.b.b #18 ENSGT00390000018509.a #19 ENSGT00390000014300.ib #20 ENSGT00940000153974.A #21 ENSGT00940000155520 #22 ENSGT00510000046986.e.a #23 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #24 ENSGT00940000162299 #25 ENSGT00760000119441 #26 ENSGT00510000055200 ENSGT00940000162113 #27 ENSGT00950000182958.a.b.b.j.a.a.b.b.b.b.a.b.a ##35 Alpin marmot MODERN SPECIES 77 ENSMMMG00000006285 BRI3 (ENSMMMG00000006279) #8 BAIAP2L1 (ENSMMMG00000006242) #9 NPTX2 (ENSMMMG00000006236) #10 TMEM130 (ENSMMMG00000006225) #11 TRRAP (ENSMMMG00000005650) #12 SMURF1 (ENSMMMG00000005602) #13 KPNA7 (ENSMMMG00000005564) #14 ENSMMMG00000005492 ARPC1A (ENSMMMG00000005477) #17 ARPC1B (ENSMMMG00000005459) #18 PDAP1 (ENSMMMG00000005448) #19 BUD31 (ENSMMMG00000005402) #20 PTCD1 (ENSMMMG00000005393) #21 ENSMMMG00000005390 CPSF4 (ENSMMMG00000005304) #22 ENSMMMG00000005266 #23 ZNF394 (ENSMMMG00000005254) #24 ZKSCAN5 (ENSMMMG00000005213) #25 ZNF655 (ENSMMMG00000005178) #26 TMEM225B (ENSMMMG00000005168) ZSCAN25 (ENSMMMG00000005159) #27 ENSMMMG00000005149 ##35 ENSMMMG00000005108 ##35 ENSMMMG00000005062 ##35 Marmotini_b ANCESTRAL SPECIES 131 ENSGT00940000161824 ENSGT00510000047886.a #7 ENSGT00510000048486 #8 ENSGT00940000153560.b.b.a #9 ENSGT01060000248591.a.a.a.a #10 ENSGT00950000183188.A.b #11 ENSGT00390000017961 #12 ENSGT00940000158690 #13 ENSGT01050000244891.B #14 ENSGT00940000160705.C.b ENSGT00950000183183.b.a #17 ENSGT00950000183183.b.b #18 ENSGT00390000018509.a #19 ENSGT00390000014300.ib #20 ENSGT00940000153974.A #21 ENSGT00940000155520 #22 ENSGT00510000046986.e.a #23 ENSGT00940000154488.A.b.a.b ENSGT00940000162347 #24 ENSGT00940000162299 #25 ENSGT00760000119441 #26 ENSGT00510000055200 ENSGT00940000162113 #27 ENSGT00950000182958.a.b.b.j.a.a.b.b.b.b.a.b.a ##35 Squirrel MODERN SPECIES 350 LMTK2 (ENSSTOG00000009706) BHLHA15 (ENSSTOG00000009728) TECPR1 (ENSSTOG00000009733) #7 BRI3 (ENSSTOG00000021622) #8 BAIAP2L1 (ENSSTOG00000020782) #9 NPTX2 (ENSSTOG00000003631) #10 TMEM130 (ENSSTOG00000010723) #11 TRRAP (ENSSTOG00000028392) #12 SMURF1 (ENSSTOG00000015427) #13 KPNA7 (ENSSTOG00000032733) #14 ARPC1A (ENSSTOG00000001660) #17 ARPC1B (ENSSTOG00000001668) #18 PDAP1 (ENSSTOG00000001679) #19 BUD31 (ENSSTOG00000023828) #20 PTCD1 (ENSSTOG00000001682) #21 CPSF4 (ENSSTOG00000001688) #22 ATP5MF (ENSSTOG00000023928) #23 ENSSTOG00000034172 ZNF394 (ENSSTOG00000032054) #24 ZKSCAN5 (ENSSTOG00000019879) #25 ZNF655 (ENSSTOG00000008206) #26 ZSCAN25 (ENSSTOG00000008185) #27 Arctic ground squirrel DUPLICATION Arctic ground squirrel MODERN SPECIES 300 TECPR1 (ENSUPAG00010006865) #7 BRI3 (ENSUPAG00010006894) #8 BAIAP2L1 (ENSUPAG00010006906) #9 NPTX2 (ENSUPAG00010006944) #10 TMEM130 (ENSUPAG00010006958) #11 TRRAP (ENSUPAG00010006983) #12 ENSUPAG00010007610 SMURF1 (ENSUPAG00010007614) #13 KPNA7 (ENSUPAG00010007717) #14 ENSUPAG00010007740 ARPC1A (ENSUPAG00010007778) #17 ARPC1B (ENSUPAG00010007793) #18 PDAP1 (ENSUPAG00010007814) #19 BUD31 (ENSUPAG00010007837) #20 PTCD1 (ENSUPAG00010007850) #21 CPSF4 (ENSUPAG00010007865) #22 ENSUPAG00010007991 ENSUPAG00010007996 #23 ENSUPAG00010008010 #24 ENSUPAG00010008013 #24 ZKSCAN5 (ENSUPAG00010008019) #25 ZNF655 (ENSUPAG00010008051) #26 TMEM225B (ENSUPAG00010008085) ZSCAN25 (ENSUPAG00010008096) #27 ENSUPAG00010008106 ##35 ENSUPAG00010008122 ##35 ENSUPAG00010008173 ##35 ENSUPAG00010008186 Arctic ground squirrel MODERN SPECIES 111 P2RY1 (ENSUPAG00010006704) RAP2B (ENSUPAG00010006710) ARHGEF26 (ENSUPAG00010006714) DHX36 (ENSUPAG00010006741) GPR149 (ENSUPAG00010006785) MME (ENSUPAG00010006795) ENSUPAG00010006817 PLCH1 (ENSUPAG00010006835) ENSUPAG00010007178 C3orf33 (ENSUPAG00010007194) SLC33A1 (ENSUPAG00010007214) GMPS (ENSUPAG00010007230) ENSUPAG00010007272 KCNAB1 (ENSUPAG00010007381) SSR3 (ENSUPAG00010007397) ENSUPAG00010007423 #22 TIPARP (ENSUPAG00010007433) ENSUPAG00010007447 LEKR1 (ENSUPAG00010007452) CCNL1 (ENSUPAG00010007457) VEPH1 (ENSUPAG00010007462) PTX3 (ENSUPAG00010007477) SHOX2 (ENSUPAG00010007482) RSRC1 (ENSUPAG00010007492) MLF1 (ENSUPAG00010007820) GFM1 (ENSUPAG00010007852) LXN (ENSUPAG00010007947) RARRES1 (ENSUPAG00010007963) MFSD1 (ENSUPAG00010007976) ENSUPAG00010007997