Sarcopterygii	ANCESTRAL SPECIES	29	ENSGT00390000007694	ENSGT00390000015361	ENSGT00960000190936	ENSGT00530000063727.A	ENSGT00390000014549	ENSGT00390000007586.a.a	ENSGT00510000046787.f	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00940000160064.a.a	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00980000199472	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT01030000234528.A.a.b	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b	ENSGT00940000159449
Tetrapoda	ANCESTRAL SPECIES	35	ENSGT00940000156635	ENSGT00940000158879	ENSGT00390000015361	ENSGT00960000190936	ENSGT00530000063727.A	ENSGT00390000014549	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00940000160064.a.a	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00980000199472	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT01030000234528.A.a.b	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b	ENSGT00940000159449
Amniota	ANCESTRAL SPECIES	10	ENSGT00940000156635	ENSGT00940000158879	ENSGT00390000015361	ENSGT00960000190936	ENSGT00530000063727.A	ENSGT00390000014549	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00940000160064.a.a	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT01030000234528.A.a.b	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT01090000260051.b.a.a.b.b
Mammalia	ANCESTRAL SPECIES	34	ENSGT00950000183079.B	ENSGT00940000157528	ENSGT00940000157851	ENSGT00390000008798.d	ENSGT00940000156635	ENSGT00940000158879	ENSGT00390000015361	ENSGT00530000063727.A	ENSGT00390000014549	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT01030000234528.A.a.b	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b	ENSGT00940000159449
Theria	ANCESTRAL SPECIES	21	ENSGT00390000014293.b	ENSGT00940000159732	ENSGT00940000156754.a.a	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT01030000234528.A.a.b	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b
Eutheria	ANCESTRAL SPECIES	35	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.a	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000168812	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT00940000158057
Boreoeutheria	ANCESTRAL SPECIES	16	ENSGT00940000159732	ENSGT00940000156754.a.a	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b.l ##27	ENSGT00910000147005	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00890000139463.a	ENSGT00390000014726
Euarchontoglires	ANCESTRAL SPECIES	16	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00910000147005	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000000854.c.b.l ##27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00890000139463.a	ENSGT00390000014726
Primates	ANCESTRAL SPECIES	16	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00910000147005	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00940000154371.b	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b
Haplorrhini	ANCESTRAL SPECIES	11	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00910000147005	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00940000154371.b	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b
Simiiformes	ANCESTRAL SPECIES	17	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00390000016470.d	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00910000147315	ENSGT00910000147005	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00890000139463.a	ENSGT00390000014726
Platyrrhini	ANCESTRAL SPECIES	49										ENSGT00940000153912.A	ENSGT00390000016470.d	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00910000147005	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00860000136069	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214
Cebidae	ANCESTRAL SPECIES	16										ENSGT00940000153912.A	ENSGT00390000016470.d	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00860000136069	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214	ENSGT00940000160066
Cebidae_a	ANCESTRAL SPECIES	74										ENSGT00940000153912.A	ENSGT00390000016470.d	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00860000136069	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214	ENSGT00940000160066
Capuchin	MODERN SPECIES	610													ENSCCAG00000034705 #19	OPN4 (ENSCCAG00000033069) #20	LDB3 (ENSCCAG00000024950) #21	BMPR1A (ENSCCAG00000034763) #22	MMRN2 (ENSCCAG00000021443) #23	SNCG (ENSCCAG00000029794) #24	ADIRF (ENSCCAG00000035994) #25	ENSCCAG00000026182 #26	ENSCCAG00000026762 #27	SHLD2 (ENSCCAG00000029396) #28	ENSCCAG00000036714 #29	ENSCCAG00000033336 #30
Bolivian squirrel monkey	MODERN SPECIES	78						ENSSBOG00000032165	ENSSBOG00000020863	CCSER2 (ENSSBOG00000029108)	ENSSBOG00000034267	GRID1 (ENSSBOG00000034803)	WAPL (ENSSBOG00000030301)	ENSSBOG00000020266	ENSSBOG00000026101	OPN4 (ENSSBOG00000034969) #20	LDB3 (ENSSBOG00000032655) #21	BMPR1A (ENSSBOG00000021630) #22	MMRN2 (ENSSBOG00000025638) #23	SNCG (ENSSBOG00000027527) #24	ADIRF (ENSSBOG00000023226) #25	ENSSBOG00000020302 #26	ENSSBOG00000033480 #27	SHLD2 (ENSSBOG00000020023) #28	ENSSBOG00000034981 #29	GPRIN2 (ENSSBOG00000029209)	ENSSBOG00000019027 #30	ANTXRL (ENSSBOG00000031720)	ENSSBOG00000018742	RBP3 (ENSSBOG00000029731)	GDF2 (ENSSBOG00000032239)	GDF10 (ENSSBOG00000033375)	PTPN20 (ENSSBOG00000028737)
Marmoset	MODERN SPECIES	3	ENSCJAG00000008101 #30	ENSCJAG00000072533	ENSCJAG00000081025	ENSCJAG00000083223	ENSCJAG00000079169	ENSCJAG00000008837	RGR (ENSCJAG00000015338)	LRIT1 (ENSCJAG00000015350)	LRIT2 (ENSCJAG00000056097)	CDHR1 (ENSCJAG00000084607)	ENSCJAG00000068554	ENSCJAG00000085907	ENSCJAG00000071422	ENSCJAG00000047316	LDB3 (ENSCJAG00000011521) #21	BMPR1A (ENSCJAG00000011555) #22	MMRN2 (ENSCJAG00000011588) #23	ENSCJAG00000084420	SNCG (ENSCJAG00000065128) #24	ADIRF (ENSCJAG00000073286) #25	ENSCJAG00000011628 #26	ENSCJAG00000011633 #27	SHLD2 (ENSCJAG00000011757) #28	ENSCJAG00000011770 #29	GPRIN2 (ENSCJAG00000045811)	ENSCJAG00000061688	ENSCJAG00000078491	ENSCJAG00000087361	ENSCJAG00000087144	ENSCJAG00000055667	ENSCJAG00000044249
Mas night monkey	MODERN SPECIES	613							ENSANAG00000022446 #29	ENSANAG00000000061 #30	ENSANAG00000032544	RBP3 (ENSANAG00000035672)	GDF2 (ENSANAG00000030460)	GDF10 (ENSANAG00000022823)	PTPN20 (ENSANAG00000024451)	OPN4 (ENSANAG00000035648) #20	LDB3 (ENSANAG00000036659) #21	BMPR1A (ENSANAG00000022872) #22	MMRN2 (ENSANAG00000025316) #23	SNCG (ENSANAG00000031635) #24	ADIRF (ENSANAG00000027094) #25	ENSANAG00000029330	ENSANAG00000032627 #26	ENSANAG00000029386 #27	ENSANAG00000018193	SHLD2 (ENSANAG00000032313) #28	ENSANAG00000025083	ENSANAG00000009415	ENSANAG00000029573	TIMM23 (ENSANAG00000030672)	PARG (ENSANAG00000033536)
Catarrhini	ANCESTRAL SPECIES	18	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00390000016470.d	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00910000147315	ENSGT00910000147005	ENSGT00940000163475	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a.a.a #27	ENSGT00390000003133.j #28	ENSGT00390000000854.c.b.k.a.b #27	ENSGT00390000003133.i #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30
Hominoidea	ANCESTRAL SPECIES	11	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00390000016470.d	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00910000147390	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00910000147315	ENSGT00910000147005	ENSGT00940000154371.b	ENSGT00390000008403.y.a	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT00940000158057	ENSGT00940000159008
Hominidae	ANCESTRAL SPECIES	13	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00390000016470.d	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00910000147390	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00910000147315	ENSGT00910000147005	ENSGT00940000154371.b	ENSGT00390000008403.y.a	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT00940000158057	ENSGT00940000159008
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	17	ENSGT00860000136117.a	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00390000016470.d	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00910000147390	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00910000147315	ENSGT00910000147005	ENSGT00910000146846.c.a	ENSGT00410000025793.b.s.a.a	ENSGT00390000018409	ENSGT00390000009613.a	ENSGT00550000074823.a.g	ENSGT00940000163053.b	ENSGT00560000078481	ENSGT00940000154335.b	ENSGT00390000016052	ENSGT00940000163386
Homo/Pan group	DUPLICATION
Homo/Pan group	ANCESTRAL SPECIES	18	ENSGT00860000136117.a	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00390000016470.d	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00910000147390	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225.a #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00910000147315	ENSGT00910000147005	ENSGT00910000146846.c.a	ENSGT00410000025793.b.s.a.a	ENSGT00390000018409	ENSGT00390000009613.a	ENSGT00550000074823.a.g	ENSGT00940000163053.b	ENSGT00560000078481	ENSGT00940000154335.b	ENSGT00390000016052	ENSGT00940000163386
Pan	ANCESTRAL SPECIES	16	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00390000016470.d	ENSGT00940000153912.A	ENSGT00390000018433.t	ENSGT00940000155910	ENSGT00910000147390	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225.a #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00910000147315	ENSGT00910000147005	ENSGT00390000018409	ENSGT00390000009613.a	ENSGT00550000074823.a.g	ENSGT00940000163053.b	ENSGT00560000078481	ENSGT00940000154335.b	ENSGT00390000016052	ENSGT00940000163386	ENSGT00940000161066	ENSGT00940000160031
Bonobo	MODERN SPECIES	1	NRG3 (ENSPPAG00000033661)	GHITM (ENSPPAG00000014417)	GPR15LG (ENSPPAG00000042583)	CDHR1 (ENSPPAG00000011798)	LRIT2 (ENSPPAG00000029485)	LRIT1 (ENSPPAG00000037063)	RGR (ENSPPAG00000040412)	CCSER2 (ENSPPAG00000030875)	ENSPPAG00000039131	ENSPPAG00000037444	GRID1 (ENSPPAG00000030566)	ENSPPAG00000029420	WAPL (ENSPPAG00000040644)	OPN4 (ENSPPAG00000041649) #20	LDB3 (ENSPPAG00000038538) #21	BMPR1A (ENSPPAG00000039780) #22	MMRN2 (ENSPPAG00000031202) #23	ENSPPAG00000032223 #24	ADIRF (ENSPPAG00000002928) #25	ENSPPAG00000042052	ENSPPAG00000008830	ENSPPAG00000037710	MINPP1 (ENSPPAG00000043233)	PAPSS2 (ENSPPAG00000001750)	ATAD1 (ENSPPAG00000043577)	PTEN (ENSPPAG00000029313)	RNLS (ENSPPAG00000024280)	LIPJ (ENSPPAG00000035538)	LIPF (ENSPPAG00000028504)	LIPK (ENSPPAG00000031559)	LIPN (ENSPPAG00000034641)
Chimpanzee	MODERN SPECIES	1	NRG3 (ENSPTRG00000002689)	GHITM (ENSPTRG00000002691)	GPR15LG (ENSPTRG00000002692)	CDHR1 (ENSPTRG00000002693)	LRIT2 (ENSPTRG00000029854)	LRIT1 (ENSPTRG00000002694)	RGR (ENSPTRG00000002695)	CCSER2 (ENSPTRG00000002697)	ENSPTRG00000052496	ENSPTRG00000045771	GRID1 (ENSPTRG00000002700)	ENSPTRG00000051280	WAPL (ENSPTRG00000002702)	OPN4 (ENSPTRG00000002704) #20	LDB3 (ENSPTRG00000002705) #21	BMPR1A (ENSPTRG00000002706) #22	MMRN2 (ENSPTRG00000002707) #23	SNCG (ENSPTRG00000002708) #24	ADIRF (ENSPTRG00000002709) #25	ENSPTRG00000049922	ENSPTRG00000047193	ENSPTRG00000043199	ENSPTRG00000002635	FAM25A (ENSPTRG00000046441) #26	GLUD1 (ENSPTRG00000002711) #27	SHLD2 (ENSPTRG00000002465) #28	ENSPTRG00000047799	ENSPTRG00000046269	MINPP1 (ENSPTRG00000002715)	PAPSS2 (ENSPTRG00000023677)	ATAD1 (ENSPTRG00000002717)
Human	MODERN SPECIES	1	TSPAN14 (ENSG00000108219)	SH2D4B (ENSG00000178217)	NRG3 (ENSG00000185737)	GHITM (ENSG00000165678)	GPR15LG (ENSG00000188373)	CDHR1 (ENSG00000148600)	LRIT2 (ENSG00000204033)	RGR (ENSG00000148604)	LRIT1 (ENSG00000148602)	CCSER2 (ENSG00000107771)	GRID1 (ENSG00000182771)	WAPL (ENSG00000062650)	OPN4 (ENSG00000122375) #20	ENSG00000289258	LDB3 (ENSG00000122367) #21	BMPR1A (ENSG00000107779) #22	MMRN2 (ENSG00000173269) #23	SNCG (ENSG00000173267) #24	ADIRF (ENSG00000148671) #25	FAM25A (ENSG00000188100) #26	GLUD1 (ENSG00000148672) #27	SHLD2 (ENSG00000122376) #28	NUTM2A (ENSG00000184923)	NUTM2D (ENSG00000214562)	MINPP1 (ENSG00000107789)	PAPSS2 (ENSG00000198682)	ATAD1 (ENSG00000138138)	KLLN (ENSG00000227268)	PTEN (ENSG00000171862)	ENSG00000289051	RNLS (ENSG00000184719)
Homo/Pan group	ANCESTRAL SPECIES																	ENSGT00940000156225.b #22
Pan	ANCESTRAL SPECIES																	ENSGT00940000156225.b #22
Chimpanzee	MODERN SPECIES	19	MOXD1 (ENSPTRG00000018606)	CCN2 (ENSPTRG00000046307)	ENPP1 (ENSPTRG00000018603)	ENPP3 (ENSPTRG00000023128)	MED23 (ENSPTRG00000018601)	ARG1 (ENSPTRG00000018600)	ENSPTRG00000046619	AKAP7 (ENSPTRG00000018599)	EPB41L2 (ENSPTRG00000018597)	SMLR1 (ENSPTRG00000043644)	TMEM200A (ENSPTRG00000018596)	SAMD3 (ENSPTRG00000018594)	L3MBTL3 (ENSPTRG00000023858)	TMEM244 (ENSPTRG00000029415)	ARHGAP18 (ENSPTRG00000018591)	ENSPTRG00000040684 #22	ENSPTRG00000044905	LAMA2 (ENSPTRG00000018588)	PTPRK (ENSPTRG00000018587)	THEMIS (ENSPTRG00000018586)	C6H6orf58 (ENSPTRG00000018584)	SOGA3 (ENSPTRG00000018582)	KIAA0408 (ENSPTRG00000034180)	ENSPTRG00000048027	ECHDC1 (ENSPTRG00000018580)	RNF146 (ENSPTRG00000018579)	RSPO3 (ENSPTRG00000018578)	CENPW (ENSPTRG00000044162)	ENSPTRG00000047650	TRMT11 (ENSPTRG00000018577)	HINT3 (ENSPTRG00000018576)
Gorilla	MODERN SPECIES	1	ENSGGOG00000036412	NRG3 (ENSGGOG00000011517)	GHITM (ENSGGOG00000011008)	C10orf99 (ENSGGOG00000012510)	CDHR1 (ENSGGOG00000012764)	LRIT2 (ENSGGOG00000012781)	LRIT1 (ENSGGOG00000012795)	RGR (ENSGGOG00000012798)	CCSER2 (ENSGGOG00000003034)	RPS3A (ENSGGOG00000027203)	GRID1 (ENSGGOG00000012289)	ENSGGOG00000038056	WAPL (ENSGGOG00000015781)	OPN4 (ENSGGOG00000013063) #20	LDB3 (ENSGGOG00000013070) #21	BMPR1A (ENSGGOG00000003720) #22	MMRN2 (ENSGGOG00000009082) #23	ENSGGOG00000009093 #24	ADIRF (ENSGGOG00000024607) #25	ENSGGOG00000042297	ENSGGOG00000036535	ENSGGOG00000015764 #26	GLUD1 (ENSGGOG00000015770) #27	ENSGGOG00000043476 #28	ENSGGOG00000042516	ENSGGOG00000037293	ENSGGOG00000027174	MINPP1 (ENSGGOG00000007426)	PAPSS2 (ENSGGOG00000005369)	ATAD1 (ENSGGOG00000026651)	KLLN (ENSGGOG00000025668)
Orangutan	MODERN SPECIES	1	TSPAN14 (ENSPPYG00000002287)	SH2D4B (ENSPPYG00000002286)	NRG3 (ENSPPYG00000032077)	ENSPPYG00000002282	GHITM (ENSPPYG00000002280)	GPR15LG (ENSPPYG00000002279)	CDHR1 (ENSPPYG00000002278)	LRIT2 (ENSPPYG00000002277)	LRIT1 (ENSPPYG00000002276)	RGR (ENSPPYG00000002275)	CCSER2 (ENSPPYG00000002274)	GRID1 (ENSPPYG00000002273)	WAPL (ENSPPYG00000029542)	OPN4 (ENSPPYG00000002272) #20	LDB3 (ENSPPYG00000002271) #21	BMPR1A (ENSPPYG00000002270) #22	MMRN2 (ENSPPYG00000002269) #23	ENSPPYG00000002268 #24	ADIRF (ENSPPYG00000038600) #25	ENSPPYG00000002804	ENSPPYG00000020015	ENSPPYG00000020006	ENSPPYG00000002261	NCOA4 (ENSPPYG00000002262)	TIMM23 (ENSPPYG00000036786)	PARG (ENSPPYG00000002259)	OGDHL (ENSPPYG00000002258)	C10orf53 (ENSPPYG00000032032)	CHAT (ENSPPYG00000002256)	SLC18A3 (ENSPPYG00000002255)	ERCC6 (ENSPPYG00000002254)
Gibbon	MODERN SPECIES	8	ENSNLEG00000033385	GHITM (ENSNLEG00000031807)	GPR15LG (ENSNLEG00000010905)	CDHR1 (ENSNLEG00000010912)	LRIT2 (ENSNLEG00000010938)	LRIT1 (ENSNLEG00000010940)	RGR (ENSNLEG00000010947)	CCSER2 (ENSNLEG00000010963)	ENSNLEG00000031627	GRID1 (ENSNLEG00000002153)	ENSNLEG00000029226	WAPL (ENSNLEG00000002188)	ENSNLEG00000029687	OPN4 (ENSNLEG00000002362) #20	LDB3 (ENSNLEG00000002380) #21	BMPR1A (ENSNLEG00000002425) #22	MMRN2 (ENSNLEG00000002500) #23	ENSNLEG00000002548 #24	ADIRF (ENSNLEG00000002549) #25	ENSNLEG00000030274	ENSNLEG00000030954	ENSNLEG00000028827	ZNF37A (ENSNLEG00000008727)	ENSNLEG00000028063	ENSNLEG00000031406	ZNF33A (ENSNLEG00000008714)	ZNF25 (ENSNLEG00000008708)	ZNF248 (ENSNLEG00000008682)	ENSNLEG00000033032	ENSNLEG00000018821	GJD4 (ENSNLEG00000018142)
Cercopithecidae	DUPLICATION
Cercopithecidae	ANCESTRAL SPECIES	15	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00390000016470.d	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225.c #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00910000147315	ENSGT00910000147005	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a.a.a #27	ENSGT00390000003133.j #28	ENSGT00390000000854.c.b.k.a.b #27	ENSGT00390000003133.i.b #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00860000136069
Cercopithecinae	ANCESTRAL SPECIES	15	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00390000016470.d	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225.c #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a.a.a #27	ENSGT00390000003133.j #28	ENSGT00390000000854.c.b.k.a.b #27	ENSGT00390000003133.i.b #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00860000136069	ENSGT00390000014726	ENSGT00940000159802
Vervet Monkey	MODERN SPECIES	28	NRG3 (ENSCSAG00000009497)	ENSCSAG00000018425	GHITM (ENSCSAG00000009514)	GPR15LG (ENSCSAG00000009520)	CDHR1 (ENSCSAG00000009566)	LRIT2 (ENSCSAG00000009583)	LRIT1 (ENSCSAG00000009590)	RGR (ENSCSAG00000009607)	ENSCSAG00000018424	CCSER2 (ENSCSAG00000009619)	GRID1 (ENSCSAG00000009628)	ENSCSAG00000009636	WAPL (ENSCSAG00000009646)	OPN4 (ENSCSAG00000009665) #20	LDB3 (ENSCSAG00000009684) #21	BMPR1A (ENSCSAG00000009694) #22	MMRN2 (ENSCSAG00000009703) #23	SNCG (ENSCSAG00000009708) #24	ADIRF (ENSCSAG00000009713) #25	ENSCSAG00000009720 #26	GLUD1 (ENSCSAG00000009827) #27	SHLD2 (ENSCSAG00000009879) #28	ENSCSAG00000009900 #29	GPRIN2 (ENSCSAG00000018423)	ENSCSAG00000018422	ENSCSAG00000009920 #30	ENSCSAG00000009940 #26	ENSCSAG00000009984	RBP3 (ENSCSAG00000010000)	GDF2 (ENSCSAG00000010006)	GDF10 (ENSCSAG00000010010)
Cercopithecinae_a	ANCESTRAL SPECIES	14	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00390000016470.d	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00910000148314	ENSGT00940000156225.c #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00910000147315	ENSGT00910000147005	ENSGT00390000017446 #25	ENSGT00390000000854.c.b.l ##27	ENSGT00390000003133.j #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00390000000786.e.b #26	ENSGT00860000136069	ENSGT00390000014726	ENSGT00940000159802
Macaca	ANCESTRAL SPECIES	11	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00550000076451.a.a.c	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00910000148314	ENSGT00940000156225.c #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00910000147315	ENSGT00910000147005	ENSGT00390000017446 #25	ENSGT00390000000854.c.b.l ##27	ENSGT00860000135488	ENSGT00940000163475.b	ENSGT00390000000786.e.a #26	ENSGT00390000000854.c.b.k.a.a.a #27	ENSGT00390000003133.j #28	ENSGT00390000003133.i.b #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927
Pig-tailed macaque	MODERN SPECIES	230	CDHR1 (ENSMNEG00000032695)	LRIT2 (ENSMNEG00000031540)	LRIT1 (ENSMNEG00000031262)	RGR (ENSMNEG00000028989)	ENSMNEG00000044585	ENSMNEG00000041406	CCSER2 (ENSMNEG00000034379)	ENSMNEG00000019766	ENSMNEG00000039674	GRID1 (ENSMNEG00000037527)	WAPL (ENSMNEG00000017210)	ENSMNEG00000029157	OPN4 (ENSMNEG00000034845) #20	LDB3 (ENSMNEG00000026237) #21	ENSMNEG00000038100	BMPR1A (ENSMNEG00000032944) #22	MMRN2 (ENSMNEG00000032168) #23	SNCG (ENSMNEG00000027910) #24	ENSMNEG00000031046	ENSMNEG00000045410	ADIRF (ENSMNEG00000033765) #25	ENSMNEG00000029079	ENSMNEG00000044382 ##27	ENSMNEG00000036961
Macaca_a	ANCESTRAL SPECIES	13	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00550000076451.a.a.c	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225.c #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00910000147315	ENSGT00390000017446 #25	ENSGT00390000000854.c.b.l ##27	ENSGT00860000135488	ENSGT00940000163475.b	ENSGT00390000000786.e.a.a #26	ENSGT00390000000786.e.a.b #26	ENSGT00390000000854.c.b.k.a.a.a #27	ENSGT00390000003133.i.b #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30
Rhesus	MODERN SPECIES	19	ENSMMUG00000049411	ENSMMUG00000055918	NRG3 (ENSMMUG00000017380)	GHITM (ENSMMUG00000018572)	CDHR1 (ENSMMUG00000000658)	LRIT2 (ENSMMUG00000000659)	LRIT1 (ENSMMUG00000000660)	RGR (ENSMMUG00000000661)	CCSER2 (ENSMMUG00000019720)	ENSMMUG00000030571	ENSMMUG00000055728	GRID1 (ENSMMUG00000023612)	WAPL (ENSMMUG00000003924)	OPN4 (ENSMMUG00000003607) #20	LDB3 (ENSMMUG00000003608) #21	BMPR1A (ENSMMUG00000011852) #22	MMRN2 (ENSMMUG00000011851) #23	SNCG (ENSMMUG00000011849) #24	ADIRF (ENSMMUG00000030573) #25	ENSMMUG00000061731	ENSMMUG00000043246	ENSMMUG00000019677	ENSMMUG00000052696	ENSMMUG00000043859	ENSMMUG00000060843	ENSMMUG00000056811	ENSMMUG00000038867	ENSMMUG00000061975 #26	GLUD1 (ENSMMUG00000022075) #27	SHLD2 (ENSMMUG00000013439) #28	ENSMMUG00000013441 #29
Crab-eating macaque	MODERN SPECIES	19	GHITM (ENSMFAG00000043812)	GPR15LG (ENSMFAG00000043609)	CDHR1 (ENSMFAG00000001885)	LRIT2 (ENSMFAG00000000819)	LRIT1 (ENSMFAG00000000369)	RGR (ENSMFAG00000043610)	CCSER2 (ENSMFAG00000042163)	ENSMFAG00000045926	ENSMFAG00000048708	ENSMFAG00000055079	GRID1 (ENSMFAG00000038022)	WAPL (ENSMFAG00000036863)	OPN4 (ENSMFAG00000045517) #20	LDB3 (ENSMFAG00000026973) #21	ENSMFAG00000062102	BMPR1A (ENSMFAG00000040345) #22	SNCG (ENSMFAG00000034096) #24	ENSMFAG00000039537	ADIRF (ENSMFAG00000000477) #25	ENSMFAG00000058508 ##27	ENSMFAG00000056764	ENSMFAG00000065379	ENSMFAG00000048063	ENSMFAG00000059873	ENSMFAG00000027100	ENSMFAG00000063069	ENSMFAG00000017741	ENSMFAG00000036510	ENSMFAG00000041417 #26	GLUD1 (ENSMFAG00000043717) #27	ENSMFAG00000003942 #28
Cercopithecinae_b	ANCESTRAL SPECIES	14	ENSGT00950000183120.e.a.b.k	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00390000016470.d	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00910000148314	ENSGT00940000156225.c #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00910000147315	ENSGT00910000147005	ENSGT00390000017446 #25	ENSGT00940000153195.B.l.i.b	ENSGT00940000163475.a.b	ENSGT00390000000854.c.b.k.b.b.c ##27	ENSGT00940000163475.a.a.b
Olive baboon	MODERN SPECIES	2	NRG3 (ENSPANG00000022613)	ENSPANG00000037881	GHITM (ENSPANG00000022606)	GPR15LG (ENSPANG00000038684)	CDHR1 (ENSPANG00000022602)	LRIT2 (ENSPANG00000022600)	LRIT1 (ENSPANG00000022599)	RGR (ENSPANG00000022598)	CCSER2 (ENSPANG00000022596)	GRID1 (ENSPANG00000022595)	ENSPANG00000031896	ENSPANG00000042345	WAPL (ENSPANG00000022594)	OPN4 (ENSPANG00000022593) #20	LDB3 (ENSPANG00000022592) #21	BMPR1A (ENSPANG00000022591) #22	MMRN2 (ENSPANG00000022590) #23	ENSPANG00000022614 #24	ADIRF (ENSPANG00000038826) #25	ENSPANG00000044394	ENSPANG00000050921	ENSPANG00000040344	ENSPANG00000000253	ENSPANG00000047502	ZFAND4 (ENSPANG00000022669)	MARCHF8 (ENSPANG00000022668)	ALOX5 (ENSPANG00000022667)	PARG (ENSPANG00000022653)	TIMM23 (ENSPANG00000022652)	NCOA4 (ENSPANG00000022656)	MSMB (ENSPANG00000022672)
Cercopithecinae_d	ANCESTRAL SPECIES	165	ENSGT00950000183120.e.a.b.k	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00390000016470.d	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00910000148314	ENSGT00940000156225.c #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00910000147315	ENSGT00910000147005	ENSGT00390000017446 #25	ENSGT00940000153195.B.l.i.b	ENSGT00940000163475.a.b	ENSGT00390000000854.c.b.k.b.b.c.a ##27	ENSGT00940000163475.a.a.b
Sooty mangabey	MODERN SPECIES	208		NRG3 (ENSCATG00000036609)	GHITM (ENSCATG00000015640)	GPR15LG (ENSCATG00000013387)	CDHR1 (ENSCATG00000029487)	LRIT2 (ENSCATG00000025337)	LRIT1 (ENSCATG00000030741)	RGR (ENSCATG00000039386)	ENSCATG00000039080	CCSER2 (ENSCATG00000042198)	GRID1 (ENSCATG00000034859)	WAPL (ENSCATG00000026825)	OPN4 (ENSCATG00000042650) #20	LDB3 (ENSCATG00000044117) #21	ENSCATG00000015471	BMPR1A (ENSCATG00000033442) #22	MMRN2 (ENSCATG00000041891) #23	SNCG (ENSCATG00000039691) #24	ENSCATG00000039551	ENSCATG00000038730	ADIRF (ENSCATG00000038594) #25	ENSCATG00000038544	ENSCATG00000035131	ENSCATG00000034645 ##27	ENSCATG00000034616	ENSCATG00000037641
Drill	MODERN SPECIES	1176												GRID1 (ENSMLEG00000031825)	WAPL (ENSMLEG00000042571)	OPN4 (ENSMLEG00000041506) #20	LDB3 (ENSMLEG00000039120) #21	BMPR1A (ENSMLEG00000034835) #22	MMRN2 (ENSMLEG00000034357) #23	ENSMLEG00000008174 #24	ENSMLEG00000033497	ADIRF (ENSMLEG00000037473) #25	ENSMLEG00000037558	ENSMLEG00000011787
Rhinopithecus	ANCESTRAL SPECIES	505												ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225.c #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00910000147005	ENSGT00390000017446 #25	ENSGT00940000153195.B.l.i.b
Golden snub-nosed monkey	MODERN SPECIES	2223														OPN4 (ENSRROG00000033573) #20	LDB3 (ENSRROG00000002084) #21	BMPR1A (ENSRROG00000035912) #22	MMRN2 (ENSRROG00000026064) #23	SNCG (ENSRROG00000022922) #24	ADIRF (ENSRROG00000031440) #25	ENSRROG00000034413
Black snub-nosed monkey	MODERN SPECIES	1123												ENSRBIG00000036362	WAPL (ENSRBIG00000035793)	OPN4 (ENSRBIG00000034068) #20	LDB3 (ENSRBIG00000039688) #21	BMPR1A (ENSRBIG00000031649) #22	MMRN2 (ENSRBIG00000040427) #23	SNCG (ENSRBIG00000042822) #24	ENSRBIG00000042300	ADIRF (ENSRBIG00000033995) #25
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b	ENSGT00530000064220	ENSGT00940000154369.d	ENSGT01030000234629.C	ENSGT00390000016324	ENSGT00940000161449	ENSGT00940000158201	ENSGT01090000260040.b.b.b.b.a.a.a.a	ENSGT00940000155481.u.b	ENSGT00940000160511	ENSGT01030000234579.A.b.x	ENSGT00940000157909	ENSGT00510000046985.i	ENSGT01000000214434.A	ENSGT00940000156225.d #22	ENSGT00670000098080	ENSGT00940000155714	ENSGT00950000183097.a.b	ENSGT01060000248594.f	ENSGT00940000157649	ENSGT00940000162334	ENSGT00390000010687.a.a	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000161947	ENSGT00940000164931	ENSGT00940000164933	ENSGT00940000154435.p
Rhinopithecus	ANCESTRAL SPECIES	110	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b	ENSGT00530000064220	ENSGT00940000154369.d	ENSGT01030000234629.C	ENSGT00390000016324	ENSGT00940000161449	ENSGT00940000158201	ENSGT00940000155481.u.b.b	ENSGT00940000160511	ENSGT01030000234579.A.b.x	ENSGT00940000157909	ENSGT00510000046985.i	ENSGT01000000214434.A	ENSGT00940000156225.d #22	ENSGT00670000098080	ENSGT00940000155714	ENSGT00950000183097.a.b	ENSGT01060000248594.f	ENSGT00940000157649	ENSGT00940000162334	ENSGT00390000010687.a.a	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT00390000015224.c.a.a.b.b
Golden snub-nosed monkey	MODERN SPECIES	2072		TRIM42 (ENSRROG00000033793)	SLC25A36 (ENSRROG00000037476)	ENSRROG00000028830	SPSB4 (ENSRROG00000043824)	PXYLP1 (ENSRROG00000022663)	ZBTB38 (ENSRROG00000009960)	RASA2 (ENSRROG00000039486)	ENSRROG00000038402	ENSRROG00000030523	GRK7 (ENSRROG00000038885)	ATP1B3 (ENSRROG00000030567)	TFDP2 (ENSRROG00000033835)	ENSRROG00000034265	GK5 (ENSRROG00000029129)	ENSRROG00000043111 #22	ENSRROG00000044183
Black snub-nosed monkey	MODERN SPECIES	699																ENSRBIG00000033603 #22	XRN1 (ENSRBIG00000041227)	ATR (ENSRBIG00000037499)	PLS1 (ENSRBIG00000043960)	TRPC1 (ENSRBIG00000023801)	PCOLCE2 (ENSRBIG00000033789)	U2SURP (ENSRBIG00000041099)	CHST2 (ENSRBIG00000026420)	SLC9A9 (ENSRBIG00000030019)	DIPK2A (ENSRBIG00000011816)	ENSRBIG00000031667
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b	ENSGT00530000064220	ENSGT00940000154369.d	ENSGT01030000234629.C	ENSGT00390000016324	ENSGT00940000161449	ENSGT00940000158201	ENSGT00940000155481.u.b	ENSGT00940000160511	ENSGT01030000234579.A.b.x	ENSGT00940000157909	ENSGT00510000046985.i	ENSGT01000000214434.A	ENSGT00940000156225.d #22	ENSGT00670000098080	ENSGT00940000155714	ENSGT00950000183097.a.b	ENSGT01060000248594.f	ENSGT00940000157649	ENSGT00940000162334	ENSGT00390000010687.a.a	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000161947	ENSGT00940000164931	ENSGT00940000164933	ENSGT00940000154435.p
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00950000183086.a.a.b	ENSGT00910000147512	ENSGT00910000147447	ENSGT00530000064220	ENSGT00940000154369.d	ENSGT01030000234629.C	ENSGT00390000016324	ENSGT00940000161449	ENSGT00940000158201	ENSGT00940000155481.u.b	ENSGT00940000160511	ENSGT01030000234579.A.b.x	ENSGT00940000157909	ENSGT00510000046985.i	ENSGT01000000214434.A	ENSGT00940000156225.d #22	ENSGT00670000098080	ENSGT00940000155714	ENSGT00950000183097.a.b	ENSGT01060000248594.f	ENSGT00940000157649	ENSGT00940000162334	ENSGT00390000010687.a.a	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000161947	ENSGT00940000164931	ENSGT00940000164933	ENSGT00940000154435.p
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b	ENSGT00910000147512	ENSGT00910000147447	ENSGT00530000064220	ENSGT00940000154369.d	ENSGT01030000234629.C	ENSGT00390000016324	ENSGT00940000161449	ENSGT00940000158201	ENSGT00940000155481.u.b	ENSGT00940000160511	ENSGT01030000234579.A.b.x	ENSGT00940000157909	ENSGT01000000214434.A	ENSGT00940000156225.d #22	ENSGT00670000098080	ENSGT00940000155714	ENSGT00950000183097.a.b	ENSGT01060000248594.f	ENSGT00940000157649	ENSGT00390000010687.a.a	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000161947	ENSGT00940000164933	ENSGT00940000164931	ENSGT00940000154435.p	ENSGT00940000161728
Cercopithecinae_d	ANCESTRAL SPECIES	16	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b	ENSGT00910000147512	ENSGT00910000147447	ENSGT00530000064220	ENSGT00940000154369.d	ENSGT01030000234629.C	ENSGT00390000016324	ENSGT00940000161449	ENSGT00940000158201	ENSGT00940000155481.u.b	ENSGT00940000160511	ENSGT01030000234579.A.b.x	ENSGT00940000157909	ENSGT01000000214434.A	ENSGT00940000156225.d #22	ENSGT00670000098080	ENSGT00940000155714	ENSGT00950000183097.a.b	ENSGT01060000248594.f	ENSGT00940000157649	ENSGT00390000010687.a.a	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b
Sooty mangabey	MODERN SPECIES	656	NMNAT3 (ENSCATG00000031087)	CLSTN2 (ENSCATG00000036787)	ENSCATG00000045166	ENSCATG00000005820	TRIM42 (ENSCATG00000029341)	SLC25A36 (ENSCATG00000031849)	SPSB4 (ENSCATG00000038455)	PXYLP1 (ENSCATG00000036840)	ZBTB38 (ENSCATG00000005041)	RASA2 (ENSCATG00000033775)	RNF7 (ENSCATG00000042225)	GRK7 (ENSCATG00000018025)	ATP1B3 (ENSCATG00000040498)	TFDP2 (ENSCATG00000035711)	GK5 (ENSCATG00000033849)	ENSCATG00000031692 #22	XRN1 (ENSCATG00000041794)	ATR (ENSCATG00000034316)	PLS1 (ENSCATG00000034817)	TRPC1 (ENSCATG00000034251)	PCOLCE2 (ENSCATG00000025595)	U2SURP (ENSCATG00000039024)	CHST2 (ENSCATG00000022686)	SLC9A9 (ENSCATG00000034835)	DIPK2A (ENSCATG00000042655)	ENSCATG00000034132
Tarsier	MODERN SPECIES	4801											WAPL (ENSTSYG00000008827)	ENSTSYG00000037278	OPN4 (ENSTSYG00000004740) #20	LDB3 (ENSTSYG00000004785) #21	ENSTSYG00000009745	BMPR1A (ENSTSYG00000008054) #22	MMRN2 (ENSTSYG00000031357) #23	SNCG (ENSTSYG00000029468) #24	ADIRF (ENSTSYG00000028779) #25	FAM25A (ENSTSYG00000035498) #26	ENSTSYG00000001578 ##27	ENSTSYG00000036004 #28	ENSTSYG00000002169 #29	ENSTSYG00000008281
Strepsirrhini	ANCESTRAL SPECIES	11	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214
Lemuriformes	ANCESTRAL SPECIES	7	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214	ENSGT00940000160066	ENSGT00940000161964
Mouse lemur	MODERN SPECIES	6	VCL (ENSMICG00000011725)	AP3M1 (ENSMICG00000011748)	ADK (ENSMICG00000011753)	ENSMICG00000029394	KAT6B (ENSMICG00000000023)	DUSP29 (ENSMICG00000017812)	DUSP13 (ENSMICG00000017813)	ENSMICG00000037321	ENSMICG00000044167	SNURF (ENSMICG00000033656)	SNRPN (ENSMICG00000042356)	GRID1 (ENSMICG00000013627)	WAPL (ENSMICG00000001724)	OPN4 (ENSMICG00000013918) #20	LDB3 (ENSMICG00000013929) #21	BMPR1A (ENSMICG00000003384) #22	MMRN2 (ENSMICG00000000360) #23	SNCG (ENSMICG00000045281) #24	ADIRF (ENSMICG00000041499) #25	ENSMICG00000045585 #26	ENSMICG00000036686 ##27	SHLD2 (ENSMICG00000029494) #28	ENSMICG00000013579 #29	ZNF32 (ENSMICG00000043257)	CXCL12 (ENSMICG00000011935)	TMEM72 (ENSMICG00000026795)	RASSF4 (ENSMICG00000007181)	ZNF22 (ENSMICG00000037541)	ENSMICG00000033592	ALOX5 (ENSMICG00000008704)	MARCHF8 (ENSMICG00000034366)
Lemuriformes_a	ANCESTRAL SPECIES	101				ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214	ENSGT00940000160066	ENSGT00940000161964
Greater bamboo lemur	MODERN SPECIES	598										ENSPSMG00000008907	GRID1 (ENSPSMG00000008896)	ENSPSMG00000008892	WAPL (ENSPSMG00000008786)	OPN4 (ENSPSMG00000008631) #20	LDB3 (ENSPSMG00000008524) #21	BMPR1A (ENSPSMG00000008265) #22	MMRN2 (ENSPSMG00000008237) #23	SNCG (ENSPSMG00000008227) #24	ADIRF (ENSPSMG00000008181) #25	ENSPSMG00000008172 #26	ENSPSMG00000008147 ##27	ENSPSMG00000008112 #28	ENSPSMG00000008107 #28	ENSPSMG00000008104 #29	GPRIN2 (ENSPSMG00000008086)	ENSPSMG00000008082
Coquerels sifaka	MODERN SPECIES	494													WAPL (ENSPCOG00000016189)	OPN4 (ENSPCOG00000023449) #20	LDB3 (ENSPCOG00000020023) #21	BMPR1A (ENSPCOG00000017522) #22	MMRN2 (ENSPCOG00000008246) #23	SNCG (ENSPCOG00000020303) #24	ADIRF (ENSPCOG00000027059) #25	ENSPCOG00000015367 #26	ENSPCOG00000021395 ##27	ENSPCOG00000022430 #28	ENSPCOG00000020394 #29	RBP3 (ENSPCOG00000004977)	GDF2 (ENSPCOG00000027073)	GDF10 (ENSPCOG00000016165)	ENSPCOG00000013251	PTPN20 (ENSPCOG00000014055)	FRMPD2 (ENSPCOG00000018018)	MAPK8 (ENSPCOG00000026756)	ARHGAP22 (ENSPCOG00000028260)
Bushbaby	MODERN SPECIES	390													ENSOGAG00000008180	OPN4 (ENSOGAG00000017016) #20	LDB3 (ENSOGAG00000017018) #21	BMPR1A (ENSOGAG00000010762) #22	MMRN2 (ENSOGAG00000027665) #23	SNCG (ENSOGAG00000007574) #24	ADIRF (ENSOGAG00000009362) #25	ENSOGAG00000003641 ##27	ENSOGAG00000003806 #28	ENSOGAG00000003809 #29	GPRIN2 (ENSOGAG00000026717)	ENSOGAG00000032974	ENSOGAG00000009829 #30	ENSOGAG00000029273
Euarchontoglires_A	ANCESTRAL SPECIES	15	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214
Tree shrew	MODERN SPECIES	220																ENSTBEG00000002941 #22	ENSTBEG00000003805 #23	ENSTBEG00000005239 #27
Glires	ANCESTRAL SPECIES	16	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214
Lagomorpha	ANCESTRAL SPECIES	198												ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727
Rabbit	MODERN SPECIES	9	ENSOCUG00000023496	ENSOCUG00000022799	ZFAND4 (ENSOCUG00000027810)	MARCHF8 (ENSOCUG00000005434)	ALOX5 (ENSOCUG00000005428)	ENSOCUG00000014073	ENSOCUG00000031390	ENSOCUG00000037390	ENSOCUG00000036486	ENSOCUG00000024290	ENSOCUG00000037261	GRID1 (ENSOCUG00000012865)	WAPL (ENSOCUG00000016503)	OPN4 (ENSOCUG00000017574) #20	LDB3 (ENSOCUG00000012693) #21	BMPR1A (ENSOCUG00000016925) #22	MMRN2 (ENSOCUG00000016936) #23	SNCG (ENSOCUG00000013292) #24	ENSOCUG00000016943 #26	ENSOCUG00000008518 ##27	SHLD2 (ENSOCUG00000004390) #28	ENSOCUG00000004393 #29	GPRIN2 (ENSOCUG00000005728)	NPY4R (ENSOCUG00000014188)	ANXA8 (ENSOCUG00000014189) #30	ENSOCUG00000009721	ENSOCUG00000024476	ENSOCUG00000023411	ENSOCUG00000012472	POLR3A (ENSOCUG00000012450)	DLG5 (ENSOCUG00000002180)
Pika	MODERN SPECIES	8536																BMPR1A (ENSOPRG00000014900) #22	ENSOPRG00000014916 #23	SNCG (ENSOPRG00000014928) #24
Rodentia	ANCESTRAL SPECIES	16	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214
Rodentia_B	ANCESTRAL SPECIES	10	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214	ENSGT00940000160066	ENSGT00940000161964	ENSGT00940000153692.B	ENSGT00950000183015.B.b	ENSGT00940000155684
Myomorpha	ANCESTRAL SPECIES	15	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214	ENSGT00940000160066	ENSGT00940000161964	ENSGT00940000153692.B	ENSGT00950000183015.B.b	ENSGT00940000155684
Muroidea	ANCESTRAL SPECIES	62	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00860000135876	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214
Muroidea_A	ANCESTRAL SPECIES	10	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00860000135876	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214
Cricetidae	ANCESTRAL SPECIES	31	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00860000135876	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214
Cricetidae_B	ANCESTRAL SPECIES	42	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00860000135876	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214
Northern American deer mouse	MODERN SPECIES	22	Tspan14 (ENSPEMG00000011034)	Sh2d4b (ENSPEMG00000013526)	Nrg3 (ENSPEMG00000015743)	ENSPEMG00000028531	Ghitm (ENSPEMG00000011507)	Gpr15lg (ENSPEMG00000031307)	Cdhr1 (ENSPEMG00000012705)	Lrit2 (ENSPEMG00000013429)	Lrit1 (ENSPEMG00000010398)	Rgr (ENSPEMG00000011697)	Ccser2 (ENSPEMG00000028286)	Grid1 (ENSPEMG00000018243)	Wapl (ENSPEMG00000000112)	Opn4 (ENSPEMG00000000452) #20	Ldb3 (ENSPEMG00000008228) #21	Bmpr1a (ENSPEMG00000010865) #22	Mmrn2 (ENSPEMG00000011426) #23	Sncg (ENSPEMG00000011806) #24	Fam25c (ENSPEMG00000011914) #26	Glud1 (ENSPEMG00000012186) ##27	Shld2 (ENSPEMG00000012743) #28	Syt15 (ENSPEMG00000013101) #29	Gprin2 (ENSPEMG00000013767)	Npy4r (ENSPEMG00000028618)	Anxa8 (ENSPEMG00000005656) #30	Zfp488 (ENSPEMG00000024926)	Rbp3 (ENSPEMG00000009222)	Gdf2 (ENSPEMG00000026964)	Gdf10 (ENSPEMG00000010173)	Ptpn20 (ENSPEMG00000010655)	Frmpd2 (ENSPEMG00000029159)
Prairie vole	MODERN SPECIES	14	Prxl2a (ENSMOCG00000003643)	Tspan14 (ENSMOCG00000009804)	Sh2d4b (ENSMOCG00000014832)	Nrg3 (ENSMOCG00000009105)	Ghitm (ENSMOCG00000018145)	Gpr15lg (ENSMOCG00000022126)	Cdhr1 (ENSMOCG00000014840)	Lrit2 (ENSMOCG00000023010)	Lrit1 (ENSMOCG00000013485)	Rgr (ENSMOCG00000014391)	ENSMOCG00000017539	Grid1 (ENSMOCG00000020229)	Wapl (ENSMOCG00000011054)	Opn4 (ENSMOCG00000017147) #20	Ldb3 (ENSMOCG00000014189) #21	Bmpr1a (ENSMOCG00000021387) #22	Mmrn2 (ENSMOCG00000021151) #23	Sncg (ENSMOCG00000010401) #24	Fam25c (ENSMOCG00000014277) #26	Glud1 (ENSMOCG00000015380) ##27	Shld2 (ENSMOCG00000015743) #28	Gprin2 (ENSMOCG00000016766)	Npy4r (ENSMOCG00000017195)	Anxa8 (ENSMOCG00000017966) #30	Antxrl (ENSMOCG00000008271)	ENSMOCG00000011993	Zfp488 (ENSMOCG00000014248)	Rbp3 (ENSMOCG00000020177)	Gdf2 (ENSMOCG00000022256)	Gdf10 (ENSMOCG00000005707)	Ptpn20 (ENSMOCG00000007405)
Cricetinae	ANCESTRAL SPECIES	9	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00860000135876	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214
Chinese hamster chok1gshd	MODERN SPECIES	76	Tspan14 (ENSCGRG00001013610)	Sh2d4b (ENSCGRG00001015755)	Nrg3 (ENSCGRG00001024148)	Ghitm (ENSCGRG00001023033)	Gpr15lg (ENSCGRG00001000757)	Cdhr1 (ENSCGRG00001012932)	ENSCGRG00001016916	Lrit2 (ENSCGRG00001017784)	Lrit1 (ENSCGRG00001019167)	Rgr (ENSCGRG00001019503)	Ccser2 (ENSCGRG00001023404)	Grid1 (ENSCGRG00001015468)	Wapl (ENSCGRG00001021235)	Opn4 (ENSCGRG00001014260) #20	Ldb3 (ENSCGRG00001021355) #21	Bmpr1a (ENSCGRG00001020198) #22	Mmrn2 (ENSCGRG00001011953) #23	Sncg (ENSCGRG00001012588) #24	Fam25c (ENSCGRG00001014971) #26	Glud1 (ENSCGRG00001017808) ##27	Shld2 (ENSCGRG00001009835) #28	Syt15 (ENSCGRG00001017699) #29	Gprin2 (ENSCGRG00001009141)	Npy4r (ENSCGRG00001005399)	Anxa8 (ENSCGRG00001014604) #30	Antxrl (ENSCGRG00001016703)	ENSCGRG00001020633	Zfp488 (ENSCGRG00001007374)	Rbp3 (ENSCGRG00001023548)	Gdf2 (ENSCGRG00001000141)	Gdf10 (ENSCGRG00001013862)
Golden Hamster	MODERN SPECIES	691					Ghitm (ENSMAUG00000000297)	Gpr15lg (ENSMAUG00000001766)	Cdhr1 (ENSMAUG00000003853)	Lrit2 (ENSMAUG00000013629)	Lrit1 (ENSMAUG00000015062)	Rgr (ENSMAUG00000001037)	ENSMAUG00000003126	Grid1 (ENSMAUG00000003072)	Wapl (ENSMAUG00000009735)	Opn4 (ENSMAUG00000012309) #20	Ldb3 (ENSMAUG00000014554) #21	Bmpr1a (ENSMAUG00000016176) #22	Mmrn2 (ENSMAUG00000017602) #23	Sncg (ENSMAUG00000014759) #24	Fam25c (ENSMAUG00000015381) #26	Glud1 (ENSMAUG00000014627) ##27	Shld2 (ENSMAUG00000017850) #28	Syt15 (ENSMAUG00000017421) #29	Npy4r (ENSMAUG00000016342)	Anxa8 (ENSMAUG00000017444) #30	Antxrl (ENSMAUG00000019213)	ENSMAUG00000008138	Zfp488 (ENSMAUG00000009994)	Rbp3 (ENSMAUG00000000607)	Gdf2 (ENSMAUG00000000135)	Gdf10 (ENSMAUG00000002326)	Ptpn20 (ENSMAUG00000001430)
Murinae	ANCESTRAL SPECIES	26	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00860000135876	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214
Mus	ANCESTRAL SPECIES	8	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000153181.z.g.b.b	ENSGT00940000153181.z.g.b.a	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00860000136039	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00860000135882	ENSGT00860000135876	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802
Mus_A	ANCESTRAL SPECIES	12	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000153181.z.g.b.b	ENSGT00940000153181.z.g.b.a	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00860000136039	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00860000135882	ENSGT00860000135876	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802
Mus_B	ANCESTRAL SPECIES	11	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000153181.z.g.b.b	ENSGT00940000153181.z.g.b.a	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00860000136039	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00860000135882	ENSGT00860000135876	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802
Mus_C	ANCESTRAL SPECIES	26	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000153181.z.g.b.a	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00860000136039	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00860000135882	ENSGT00860000135876	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802
spretus	MODERN SPECIES	5	Nrg3 (MGP_SPRETEiJ_G0020022)	Ghitm (MGP_SPRETEiJ_G0020021)	Gpr15lg (MGP_SPRETEiJ_G0020020)	Cdhr1 (MGP_SPRETEiJ_G0020019)	Lrit2 (MGP_SPRETEiJ_G0020018)	Lrit1 (MGP_SPRETEiJ_G0020017)	Rgr (MGP_SPRETEiJ_G0020016)	Ccser2 (MGP_SPRETEiJ_G0020015)	4930474N05Rik (MGP_SPRETEiJ_G0020014)	4930596D02Rik (MGP_SPRETEiJ_G0020013)	Grid1 (MGP_SPRETEiJ_G0020012)	Wapl (MGP_SPRETEiJ_G0020011)	Opn4 (MGP_SPRETEiJ_G0020010) #20	Ldb3 (MGP_SPRETEiJ_G0020009) #21	MGP_SPRETEiJ_G0020008	Bmpr1a (MGP_SPRETEiJ_G0020007) #22	Mmrn2 (MGP_SPRETEiJ_G0020006) #23	Sncg (MGP_SPRETEiJ_G0020005) #24	Fam25c (MGP_SPRETEiJ_G0020004) #26	Glud1 (MGP_SPRETEiJ_G0020003) ##27	Shld2 (MGP_SPRETEiJ_G0020002) #28	Syt15 (MGP_SPRETEiJ_G0020001) #29	Gprin2 (MGP_SPRETEiJ_G0020000)	Npy4r (MGP_SPRETEiJ_G0019999)	Anxa8 (MGP_SPRETEiJ_G0019998) #30	Antxrl (MGP_SPRETEiJ_G0019997)	A630023A22Rik (MGP_SPRETEiJ_G0019996)	MGP_SPRETEiJ_G0019995	Zfp488 (MGP_SPRETEiJ_G0019994)	Rbp3 (MGP_SPRETEiJ_G0019993)	Gdf2 (MGP_SPRETEiJ_G0019992)
Steppe mouse	MODERN SPECIES	3172												Wapl (ENSMSIG00000028406)	Opn4 (ENSMSIG00000028439) #20	Ldb3 (ENSMSIG00000028460) #21	9230112D13Rik (ENSMSIG00000028580)	Bmpr1a (ENSMSIG00000028586) #22	Mmrn2 (ENSMSIG00000028602) #23	ENSMSIG00000028610 #24	ENSMSIG00000028614 #26	Glud1 (ENSMSIG00000028620) ##27	ENSMSIG00000028637	C8b (ENSMSIG00000028644)	C8a (ENSMSIG00000028660)	Fyb2 (ENSMSIG00000028687)	Prkaa2 (ENSMSIG00000028721)	Plpp3 (ENSMSIG00000028724)	ENSMSIG00000028731	ENSMSIG00000028734	Usp24 (ENSMSIG00000028765)	Pcsk9 (ENSMSIG00000028827)	Bsnd (ENSMSIG00000028832)
Mouse	MODERN SPECIES	5	Nrg3 (ENSMUSG00000041014)	Ghitm (ENSMUSG00000041028)	Gpr15lg (ENSMUSG00000096001)	Cdhr1 (ENSMUSG00000021803)	Lrit2 (ENSMUSG00000043418)	Lrit1 (ENSMUSG00000041044)	Rgr (ENSMUSG00000021804)	Ccser2 (ENSMUSG00000058690)	4930474N05Rik (ENSMUSG00000096405)	4930596D02Rik (ENSMUSG00000041068)	Grid1 (ENSMUSG00000041078)	Wapl (ENSMUSG00000041408)	Opn4 (ENSMUSG00000021799) #20	Ldb3 (ENSMUSG00000021798) #21	9230112D13Rik (ENSMUSG00000021797)	Bmpr1a (ENSMUSG00000021796) #22	Mmrn2 (ENSMUSG00000041445) #23	Sncg (ENSMUSG00000023064) #24	Fam25c (ENSMUSG00000043681) #26	Glud1 (ENSMUSG00000021794) ##27	Shld2 (ENSMUSG00000041471) #28	Syt15 (ENSMUSG00000041479) #29	Gprin2 (ENSMUSG00000071531)	Npy4r (ENSMUSG00000048337)	Anxa8 (ENSMUSG00000021950) #30	Antxrl (ENSMUSG00000047441)	A630023A22Rik (ENSMUSG00000095493)	Gm5460 (ENSMUSG00000072624)	Gm30083 (ENSMUSG00000115726)	Zfp488 (ENSMUSG00000044519)	Rbp3 (ENSMUSG00000041534)
Ryukyu mouse	MODERN SPECIES	5	Nrg3 (MGP_CAROLIEiJ_G0019136)	Ghitm (MGP_CAROLIEiJ_G0019135)	Gpr15lg (MGP_CAROLIEiJ_G0019134)	Cdhr1 (MGP_CAROLIEiJ_G0019133)	Lrit2 (MGP_CAROLIEiJ_G0019132)	Lrit1 (MGP_CAROLIEiJ_G0019131)	Rgr (MGP_CAROLIEiJ_G0019130)	Ccser2 (MGP_CAROLIEiJ_G0019129)	MGP_CAROLIEiJ_G0019128	4930596D02Rik (MGP_CAROLIEiJ_G0019127)	Grid1 (MGP_CAROLIEiJ_G0019126)	Wapl (MGP_CAROLIEiJ_G0019125)	Opn4 (MGP_CAROLIEiJ_G0019124) #20	Ldb3 (MGP_CAROLIEiJ_G0019123) #21	9230112D13Rik (MGP_CAROLIEiJ_G0019122)	Bmpr1a (MGP_CAROLIEiJ_G0019121) #22	Mmrn2 (MGP_CAROLIEiJ_G0019120) #23	Sncg (MGP_CAROLIEiJ_G0019119) #24	Fam25c (MGP_CAROLIEiJ_G0019118) #26	Glud1 (MGP_CAROLIEiJ_G0019117) ##27	Shld2 (MGP_CAROLIEiJ_G0019116) #28	Syt15 (MGP_CAROLIEiJ_G0019115) #29	Gprin2 (MGP_CAROLIEiJ_G0019114)	Npy4r (MGP_CAROLIEiJ_G0019113)	Anxa8 (MGP_CAROLIEiJ_G0019112) #30	Antxrl (MGP_CAROLIEiJ_G0019111)	MGP_CAROLIEiJ_G0019110	MGP_CAROLIEiJ_G0019109	Zfp488 (MGP_CAROLIEiJ_G0019108)	Rbp3 (MGP_CAROLIEiJ_G0019107)	Gdf2 (MGP_CAROLIEiJ_G0019106)
Shrew mouse	MODERN SPECIES	21	Sh2d4b (MGP_PahariEiJ_G0030153)	Nrg3 (MGP_PahariEiJ_G0030152)	Ghitm (MGP_PahariEiJ_G0030151)	Gpr15lg (MGP_PahariEiJ_G0030150)	Cdhr1 (MGP_PahariEiJ_G0030149)	Lrit2 (MGP_PahariEiJ_G0030148)	Lrit1 (MGP_PahariEiJ_G0030147)	Rgr (MGP_PahariEiJ_G0030146)	Ccser2 (MGP_PahariEiJ_G0030145)	4930596D02Rik (MGP_PahariEiJ_G0030144)	Grid1 (MGP_PahariEiJ_G0030143)	Wapl (MGP_PahariEiJ_G0030142)	Opn4 (MGP_PahariEiJ_G0030141) #20	Ldb3 (MGP_PahariEiJ_G0030140) #21	MGP_PahariEiJ_G0030139	Bmpr1a (MGP_PahariEiJ_G0030138) #22	Mmrn2 (MGP_PahariEiJ_G0030137) #23	Sncg (MGP_PahariEiJ_G0030136) #24	Fam25c (MGP_PahariEiJ_G0030135) #26	Glud1 (MGP_PahariEiJ_G0030134) ##27	Shld2 (MGP_PahariEiJ_G0030133) #28	Syt15 (MGP_PahariEiJ_G0030132) #29	Gprin2 (MGP_PahariEiJ_G0030131)	Npy4r (MGP_PahariEiJ_G0030130)	Anxa8 (MGP_PahariEiJ_G0030129) #30	Antxrl (MGP_PahariEiJ_G0030128)	MGP_PahariEiJ_G0030127	MGP_PahariEiJ_G0030126	Zfp488 (MGP_PahariEiJ_G0030125)	Rbp3 (MGP_PahariEiJ_G0030124)	Gdf2 (MGP_PahariEiJ_G0030123)
Rat	MODERN SPECIES	7	Ralgds-ps4 (ENSRNOG00000056463)	RGD1559508 (ENSRNOG00000056897)	LOC108353078 (ENSRNOG00000063316)	ENSRNOG00000066563	AABR07036505.1 (ENSRNOG00000052647)	RGD1559508 (ENSRNOG00000068580)	LOC102551632 (ENSRNOG00000066408)	LOC120097482 (ENSRNOG00000065913)	RGD1565329 (ENSRNOG00000063129)	LOC100363883 (ENSRNOG00000069329)	Rpl38-ps9 (ENSRNOG00000049047)	Grid1 (ENSRNOG00000055499)	Wapl (ENSRNOG00000052513)	Opn4 (ENSRNOG00000053893) #20	Ldb3 (ENSRNOG00000059166) #21	Bmpr1a (ENSRNOG00000052469) #22	Mmrn2 (ENSRNOG00000051977) #23	Sncg (ENSRNOG00000058006) #24	Fam25a (ENSRNOG00000055025) #26	Glud1 (ENSRNOG00000057367) ##27	Shld2 (ENSRNOG00000059057) #28	Syt15 (ENSRNOG00000051688) #29	Gprin2 (ENSRNOG00000055042)	Npy4r (ENSRNOG00000061026)	Anxa8 (ENSRNOG00000060949) #30	Antxrl (ENSRNOG00000052152)	LOC681303 (ENSRNOG00000055677)	LOC100910026 (ENSRNOG00000060767)	Zfp488 (ENSRNOG00000057542)	Rbp3 (ENSRNOG00000051911)	Gdf2 (ENSRNOG00000057751)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1869											Grid1 (ENSNGAG00000011372)	Wapl (ENSNGAG00000016668)	ENSNGAG00000005178	Opn4 (ENSNGAG00000011576) #20	ENSNGAG00000010329 #21	Bmpr1a (ENSNGAG00000016693) #22	Mmrn2 (ENSNGAG00000017631) #23	Sncg (ENSNGAG00000016118) #24	Fam25c (ENSNGAG00000000481) #26	Glud1 (ENSNGAG00000000732) ##27	Shld2 (ENSNGAG00000001743) #28
Lesser Egyptian jerboa	MODERN SPECIES	64	Mat1a (ENSJJAG00000022624)	Dydc1 (ENSJJAG00000017106)	Dydc2 (ENSJJAG00000010678)	Prxl2a (ENSJJAG00000021962)	Tspan14 (ENSJJAG00000023639)	Sh2d4b (ENSJJAG00000001387)	Nrg3 (ENSJJAG00000010166)	ENSJJAG00000016988	Cdhr1 (ENSJJAG00000019113)	Lrit1 (ENSJJAG00000010600)	Rgr (ENSJJAG00000019791)	Ccser2 (ENSJJAG00000010060)	ENSJJAG00000017435	Wapl (ENSJJAG00000000624)	Ldb3 (ENSJJAG00000018553) #21	Bmpr1a (ENSJJAG00000021938) #22	Sncg (ENSJJAG00000011778) #24	Fam25c (ENSJJAG00000015524) #26	Glud1 (ENSJJAG00000019831) ##27	Anxa8 (ENSJJAG00000013050) #30	Rbp3 (ENSJJAG00000007256)	Gdf2 (ENSJJAG00000018450)	Gdf10 (ENSJJAG00000001148)	Mapk8 (ENSJJAG00000022148)	ENSJJAG00000022742	ENSJJAG00000012153	Wdfy4 (ENSJJAG00000010957)	Lrrc18 (ENSJJAG00000023033)	Vstm4 (ENSJJAG00000024286)	Drgx (ENSJJAG00000015373)	Ercc6 (ENSJJAG00000013767)
Kangaroo rat	MODERN SPECIES	467	Prxl2a (ENSDORG00000015928)	Tspan14 (ENSDORG00000008405)	Sh2d4b (ENSDORG00000008406)	Nrg3 (ENSDORG00000028000)	ENSDORG00000001109	Gpr15lg (ENSDORG00000001112)	Cdhr1 (ENSDORG00000001114)	Lrit2 (ENSDORG00000001120)	Lrit1 (ENSDORG00000001121)	Rgr (ENSDORG00000001123)	ENSDORG00000008217	Grid1 (ENSDORG00000012308)	ENSDORG00000024513	Opn4 (ENSDORG00000008231) #20	ENSDORG00000027341 #21	Bmpr1a (ENSDORG00000009762) #22	Mmrn2 (ENSDORG00000009763) #23	Sncg (ENSDORG00000009765) #24
Rodentia_A	ANCESTRAL SPECIES	15	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214
Sciuridae	ANCESTRAL SPECIES	30	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000153661.b.b	ENSGT00940000162142	ENSGT00940000154696	ENSGT00950000182946.c.b.a	ENSGT00950000182946.c.b.b	ENSGT00950000182946.d.s	ENSGT00950000182946.d.t
Marmotini	ANCESTRAL SPECIES	16	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000153661.b.b	ENSGT00940000162142	ENSGT00940000154696	ENSGT00950000182946.c.b.a	ENSGT00950000182946.c.b.b	ENSGT00950000182946.d.s	ENSGT00950000182946.d.t
Marmotini_b	ANCESTRAL SPECIES	152					ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00950000185837	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000153661.b.b	ENSGT00940000162142	ENSGT00940000154696	ENSGT00950000182946.c.b.a	ENSGT00950000182946.c.b.b	ENSGT00950000182946.d.s
Arctic ground squirrel	MODERN SPECIES	178						GHITM (ENSUPAG00010006232)	CDHR1 (ENSUPAG00010006210)	LRIT2 (ENSUPAG00010006207)	LRIT1 (ENSUPAG00010006198)	RGR (ENSUPAG00010006165)	CCSER2 (ENSUPAG00010006005)	GRID1 (ENSUPAG00010005966)	WAPL (ENSUPAG00010005918)	OPN4 (ENSUPAG00010005910) #20	LDB3 (ENSUPAG00010005554) #21	BMPR1A (ENSUPAG00010005548) #22	MMRN2 (ENSUPAG00010005542) #23	SNCG (ENSUPAG00010005534) #24	ADIRF (ENSUPAG00010005531) #25	ENSUPAG00010005527	SHLD2 (ENSUPAG00010005519) #28	ENSUPAG00010005491 #29	GPRIN2 (ENSUPAG00010005486)	ENSUPAG00010005485	CH25H (ENSUPAG00010005477)	LIPA (ENSUPAG00010005464)	ENSUPAG00010005461	IFIT2 (ENSUPAG00010005455)	IFIT3 (ENSUPAG00010005450)
Squirrel	MODERN SPECIES	404												GRID1 (ENSSTOG00000015957)	WAPL (ENSSTOG00000003297)	OPN4 (ENSSTOG00000003353) #20	LDB3 (ENSSTOG00000003375) #21	BMPR1A (ENSSTOG00000015838) #22	MMRN2 (ENSSTOG00000019899) #23	SNCG (ENSSTOG00000015859) #24
Alpin marmot	MODERN SPECIES	66	PRXL2A (ENSMMMG00000010895)	TSPAN14 (ENSMMMG00000010918)	SH2D4B (ENSMMMG00000010944)	NRG3 (ENSMMMG00000010985)	GHITM (ENSMMMG00000011060)	GPR15LG (ENSMMMG00000011077)	CDHR1 (ENSMMMG00000011089)	LRIT2 (ENSMMMG00000011116)	LRIT1 (ENSMMMG00000011121)	RGR (ENSMMMG00000011130)	CCSER2 (ENSMMMG00000011155)	GRID1 (ENSMMMG00000011366)	WAPL (ENSMMMG00000011412)	OPN4 (ENSMMMG00000011474) #20	LDB3 (ENSMMMG00000011480) #21	BMPR1A (ENSMMMG00000011964) #22	MMRN2 (ENSMMMG00000011988) #23	SNCG (ENSMMMG00000012000) #24	ADIRF (ENSMMMG00000012010) #25	ENSMMMG00000012011 #26	ENSMMMG00000012018 ##27	SHLD2 (ENSMMMG00000012037) #28	ENSMMMG00000012050 #29	GPRIN2 (ENSMMMG00000012057)	ENSMMMG00000012060	CH25H (ENSMMMG00000012067)	LIPA (ENSMMMG00000012074)	ENSMMMG00000012079	IFIT2 (ENSMMMG00000012130)	IFIT3 (ENSMMMG00000012138)	IFIT1B (ENSMMMG00000012141)
Eurasian red squirrel	MODERN SPECIES	13	ENSSVLG00005004095	NRG3 (ENSSVLG00005004056)	GHITM (ENSSVLG00005003987)	GPR15LG (ENSSVLG00005003966)	CDHR1 (ENSSVLG00005003916)	LRIT2 (ENSSVLG00005003885)	LRIT1 (ENSSVLG00005003867)	RGR (ENSSVLG00005003817)	CCSER2 (ENSSVLG00005003778)	ENSSVLG00005003751	GRID1 (ENSSVLG00005003709)	WAPL (ENSSVLG00005003658)	OPN4 (ENSSVLG00005003591) #20	LDB3 (ENSSVLG00005003371) #21	ENSSVLG00005003290	BMPR1A (ENSSVLG00005003269) #22	MMRN2 (ENSSVLG00005003238) #23	SNCG (ENSSVLG00005003209) #24	ADIRF (ENSSVLG00005003188) #25	ENSSVLG00005003177	ENSSVLG00005003158 #26	ENSSVLG00005003124 ##27	ENSSVLG00005003056 #28	ENSSVLG00005003008 #29	GPRIN2 (ENSSVLG00005002992)	ENSSVLG00005002980	ENSSVLG00005002964	CH25H (ENSSVLG00005002954)	ENSSVLG00005002938	LIPA (ENSSVLG00005002910)	ENSSVLG00005002898
Hystricomorpha	ANCESTRAL SPECIES	56	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000000854.c.b.k.b.a.b ##27	ENSGT00390000003133 #28	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214	ENSGT00940000160066
Hystricomorpha_a	ANCESTRAL SPECIES	62	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT01030000237896	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000000854.c.b.k.b.a.b ##27	ENSGT00390000003133 #28	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214	ENSGT00940000160066
Guinea pig	MODERN SPECIES	62	PRXL2A (ENSCPOG00000006552)	TSPAN14 (ENSCPOG00000009896)	SH2D4B (ENSCPOG00000003471)	NRG3 (ENSCPOG00000012186)	GHITM (ENSCPOG00000006432)	ENSCPOG00000034121	CDHR1 (ENSCPOG00000005235)	LRIT2 (ENSCPOG00000015390)	LRIT1 (ENSCPOG00000015393)	RGR (ENSCPOG00000022556)	CCSER2 (ENSCPOG00000003617)	GRID1 (ENSCPOG00000010412)	WAPL (ENSCPOG00000012961)	OPN4 (ENSCPOG00000001026) #20	LDB3 (ENSCPOG00000025115) #21	BMPR1A (ENSCPOG00000026650) #22	SNCG (ENSCPOG00000023463) #24	ENSCPOG00000019581 #26	ENSCPOG00000005166 ##27	SHLD2 (ENSCPOG00000001099) #28	GPRIN2 (ENSCPOG00000032327)	Ppyr1 (ENSCPOG00000006445)	ENSCPOG00000002522 #30	ZNF488 (ENSCPOG00000000536)	RBP3 (ENSCPOG00000032678)	GDF2 (ENSCPOG00000012131)	GDF10 (ENSCPOG00000004358)	MAPK8 (ENSCPOG00000038234)	ARHGAP22 (ENSCPOG00000015342)	LRRC18 (ENSCPOG00000021217)	WDFY4 (ENSCPOG00000026208)
Hystricomorpha_b	ANCESTRAL SPECIES	87	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT01030000237896	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.b.a.b ##27	ENSGT00390000003133 #28	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214	ENSGT00940000160066	ENSGT00940000161964
Degu	MODERN SPECIES	173	ENSODEG00000012959	ENSODEG00000011340	ENSODEG00000012481	CDHR1 (ENSODEG00000010766)	LRIT2 (ENSODEG00000011609)	LRIT1 (ENSODEG00000012611)	RGR (ENSODEG00000011393)	CCSER2 (ENSODEG00000010793)	GRID1 (ENSODEG00000011958)	ENSODEG00000011516	ENSODEG00000019892	ENSODEG00000011721	OPN4 (ENSODEG00000011887) #20	ENSODEG00000011383 #21	ENSODEG00000019882	BMPR1A (ENSODEG00000011436) #22	ENSODEG00000012425	SNCG (ENSODEG00000012548) #24	ENSODEG00000012123 #26	ENSODEG00000011593 ##27	SHLD2 (ENSODEG00000012114) #28	ENSODEG00000020251	ENSODEG00000011514 #30	ZNF488 (ENSODEG00000011943)	RBP3 (ENSODEG00000012586)	GDF2 (ENSODEG00000012030)	GDF10 (ENSODEG00000012015)	ENSODEG00000012226
Long-tailed chinchilla	MODERN SPECIES	217	PRXL2A (ENSCLAG00000000254)	TSPAN14 (ENSCLAG00000000279)	SH2D4B (ENSCLAG00000000290)	NRG3 (ENSCLAG00000001117)	GHITM (ENSCLAG00000000416)	ENSCLAG00000000449	CDHR1 (ENSCLAG00000000482)	LRIT2 (ENSCLAG00000000247)	LRIT1 (ENSCLAG00000000263)	RGR (ENSCLAG00000000310)	CCSER2 (ENSCLAG00000000521)	GRID1 (ENSCLAG00000000120)	WAPL (ENSCLAG00000000189)	OPN4 (ENSCLAG00000000204) #20	LDB3 (ENSCLAG00000000336) #21	BMPR1A (ENSCLAG00000000743) #22	MMRN2 (ENSCLAG00000000878) #23	SNCG (ENSCLAG00000000913) #24	ENSCLAG00000000921 #26	ENSCLAG00000000135 ##27	SHLD2 (ENSCLAG00000000158) #28	GPRIN2 (ENSCLAG00000017398)	ENSCLAG00000017395	ENSCLAG00000000172 #30	ENSCLAG00000000180
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	7	ENSHGLG00000036050	OGDHL (ENSHGLG00000001655)	ENSHGLG00000002348	CHAT (ENSHGLG00000000867)	SLC18A3 (ENSHGLG00000020633)	ERCC6 (ENSHGLG00000000923)	DRGX (ENSHGLG00000033413)	C10orf71 (ENSHGLG00000020256)	FAM170B (ENSHGLG00000045738)	VSTM4 (ENSHGLG00000001022)	WDFY4 (ENSHGLG00000001195)	LRRC18 (ENSHGLG00000001458)	ENSHGLG00000001532	ENSHGLG00000001658	ENSHGLG00000039539	ENSHGLG00000004727 #22	ENSHGLG00000008259 #23	SNCG (ENSHGLG00000007942) #24	FAM25C (ENSHGLG00000044226) #26	GLUD1 (ENSHGLG00000006984) ##27	ENSHGLG00000047629	ENSHGLG00000020126	ENSHGLG00000005172 #28	ENSHGLG00000036796	ENSHGLG00000039819	ENSHGLG00000040895	ENSHGLG00000036532	ENSHGLG00000042445	ENSHGLG00000020003	ENSHGLG00000037312	ENSHGLG00000034580
Naked mole-rat female	MODERN SPECIES	10	ZNF326 (ENSHGLG00000004782)	ENSHGLG00000040937	ENSHGLG00000032341	ENSHGLG00000009126	ENSHGLG00000041803	ZNF644 (ENSHGLG00000008786)	HFM1 (ENSHGLG00000007780)	CDC7 (ENSHGLG00000046565)	ENSHGLG00000004997	ENSHGLG00000046123	BRDT (ENSHGLG00000004317)	ENSHGLG00000010230	ENSHGLG00000033060	ENSHGLG00000046149	BTBD8 (ENSHGLG00000008571)	ENSHGLG00000012851 #22	ENSHGLG00000012510	ENSHGLG00000011940	RPAP2 (ENSHGLG00000009983)	ENSHGLG00000046873	GFI1 (ENSHGLG00000008020)	ENSHGLG00000047533	EVI5 (ENSHGLG00000005267)	ENSHGLG00000006656	ENSHGLG00000004717	ENSHGLG00000004684	ENSHGLG00000045561	ENSHGLG00000049269	ENSHGLG00000007932	ENSHGLG00000006551	ENSHGLG00000032551
Laurasiatheria	ANCESTRAL SPECIES	14	ENSGT00940000159732	ENSGT00940000156754.a.a	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b.l ##27	ENSGT00910000147005	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727	ENSGT00890000139463.a	ENSGT00390000014726
Laurasiatheria_a	ANCESTRAL SPECIES	15	ENSGT00940000159732	ENSGT00940000156754.a.a	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b.l ##27	ENSGT00910000147005	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727.u	ENSGT00940000157727.t.b	ENSGT00890000139463.a
Artiodactyla	ANCESTRAL SPECIES	14	ENSGT00940000159732	ENSGT00940000156754.a.a	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT00510000046986.y	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727.u	ENSGT00940000157727.t.b	ENSGT00890000139463.a	ENSGT00390000014726
Suina	ANCESTRAL SPECIES	6	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT00510000046986.y	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727.u	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802
Chacoan peccary	MODERN SPECIES	975	TSPAN14 (ENSCWAG00000016283)	SH2D4B (ENSCWAG00000016213)	ENSCWAG00000016174	NRG3 (ENSCWAG00000015993)	GHITM (ENSCWAG00000015973)	GPR15LG (ENSCWAG00000015937)	CDHR1 (ENSCWAG00000015860)	LRIT2 (ENSCWAG00000015831)	LRIT1 (ENSCWAG00000015793)	RGR (ENSCWAG00000015482)	CCSER2 (ENSCWAG00000015355)	GRID1 (ENSCWAG00000015223)	WAPL (ENSCWAG00000015125)	OPN4 (ENSCWAG00000014831) #20	LDB3 (ENSCWAG00000013915) #21	BMPR1A (ENSCWAG00000013837) #22	MMRN2 (ENSCWAG00000013566) #23	SNCG (ENSCWAG00000013503) #24	ADIRF (ENSCWAG00000013478) #25	ENSCWAG00000013442 #26	ENSCWAG00000013386 #27	SHLD2 (ENSCWAG00000013233) #28	ENSCWAG00000013160 #29	GPRIN2 (ENSCWAG00000013145)	ENSCWAG00000013125	ENSCWAG00000012996 #30
Pig	MODERN SPECIES	5	GHITM (ENSSSCG00000010345)	GPR15LG (ENSSSCG00000024634)	CDHR1 (ENSSSCG00000010348)	LRIT2 (ENSSSCG00000010347)	LRIT1 (ENSSSCG00000034402)	RGR (ENSSSCG00000010350)	CCSER2 (ENSSSCG00000010351)	ENSSSCG00000027329	ENSSSCG00000059672	GRID1 (ENSSSCG00000010352)	ENSSSCG00000044759	WAPL (ENSSSCG00000010357)	OPN4 (ENSSSCG00000010358) #20	ENSSSCG00000010359 #21	ENSSSCG00000060206 #21	BMPR1A (ENSSSCG00000010360) #22	ENSSSCG00000059512	MMRN2 (ENSSSCG00000024048) #23	SNCG (ENSSSCG00000026850) #24	ADIRF (ENSSSCG00000037918) #25	ENSSSCG00000051357	ENSSSCG00000026339 #26	GLUD1 (ENSSSCG00000010368) #27	SHLD2 (ENSSSCG00000027767) #28	ENSSSCG00000028341 #29	ENSSSCG00000010369	ENSSSCG00000010370 #30	ENSSSCG00000043778	ZNF488 (ENSSSCG00000040893)	RBP3 (ENSSSCG00000010374)	GDF2 (ENSSSCG00000010375)
Artiodactyla_a	ANCESTRAL SPECIES	14	ENSGT00940000159732	ENSGT00940000156754.a.a	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT00510000046986.y	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727.u	ENSGT00940000157727.t.b	ENSGT00890000139463.a	ENSGT00390000014726
Artiodactyla_b	ANCESTRAL SPECIES	13	ENSGT00940000159732	ENSGT00940000156754.a.a	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT00510000046986.y	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727.u	ENSGT00940000157727.t.b	ENSGT00890000139463.a	ENSGT00390000014726
Cetacea	ANCESTRAL SPECIES	15	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT00510000046986.y	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727.u	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802
Odontoceti	ANCESTRAL SPECIES	14	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT00510000046986.y	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000007479.y.a.o	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802
Odontoceti_a	ANCESTRAL SPECIES	11	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT00510000046986.y	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000007479.y.a.o	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802
Odontoceti_b	ANCESTRAL SPECIES	14	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT00510000046986.y	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000007479.y.a.o	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802
Monodontidae	ANCESTRAL SPECIES	14	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT00510000046986.y	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000007479.y.a.o	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802
Beluga whale	MODERN SPECIES	65	FAM213A (ENSDLEG00000008086)	TSPAN14 (ENSDLEG00000008056)	SH2D4B (ENSDLEG00000008032)	ENSDLEG00000008022	GHITM (ENSDLEG00000007990)	CDHR1 (ENSDLEG00000007970)	LRIT2 (ENSDLEG00000007947)	LRIT1 (ENSDLEG00000007931)	RGR (ENSDLEG00000012476)	CCSER2 (ENSDLEG00000012429)	GRID1 (ENSDLEG00000012126)	ENSDLEG00000012096	WAPL (ENSDLEG00000012059)	OPN4 (ENSDLEG00000011923) #20	LDB3 (ENSDLEG00000011854) #21	BMPR1A (ENSDLEG00000011835) #22	MMRN2 (ENSDLEG00000011819) #23	SNCG (ENSDLEG00000011813) #24	ADIRF (ENSDLEG00000011801) #25	ENSDLEG00000011797 #26	GLUD1 (ENSDLEG00000011771) #27	ENSDLEG00000011756 #28	ENSDLEG00000011751 #28	ENSDLEG00000011730 #29	GPRIN2 (ENSDLEG00000011726)	ENSDLEG00000011723	ENSDLEG00000011531 #30	ZNF488 (ENSDLEG00000011507)	RBP3 (ENSDLEG00000011470)	GDF2 (ENSDLEG00000011460)	GDF10 (ENSDLEG00000011452)
Narwhal	MODERN SPECIES	311	PRXL2A (ENSMMNG00015013046)	TSPAN14 (ENSMMNG00015013074)	SH2D4B (ENSMMNG00015013109)	NRG3 (ENSMMNG00015013141)	GHITM (ENSMMNG00015013177)	GPR15LG (ENSMMNG00015013188)	CDHR1 (ENSMMNG00015013199)	LRIT2 (ENSMMNG00015013216)	LRIT1 (ENSMMNG00015013227)	RGR (ENSMMNG00015013252)	CCSER2 (ENSMMNG00015013293)	GRID1 (ENSMMNG00015013323)	WAPL (ENSMMNG00015013353)	OPN4 (ENSMMNG00015013391) #20	LDB3 (ENSMMNG00015013460) #21	BMPR1A (ENSMMNG00015013629) #22	ENSMMNG00015013646	MMRN2 (ENSMMNG00015013661) #23	SNCG (ENSMMNG00015013686) #24	ADIRF (ENSMMNG00015013711) #25	ENSMMNG00015013718 #26	ENSMMNG00015013733 #27	ENSMMNG00015013745	SHLD2 (ENSMMNG00015013761) #28	ENSMMNG00015013786 #29	GPRIN2 (ENSMMNG00015013806)	ENSMMNG00015013813	ENSMMNG00015013838 #30	ENSMMNG00015013875	RBP3 (ENSMMNG00015013882)	GDF2 (ENSMMNG00015013891)
Vaquita	MODERN SPECIES	7	PRXL2A (ENSPSNG00000022616)	TSPAN14 (ENSPSNG00000022619)	SH2D4B (ENSPSNG00000022622)	NRG3 (ENSPSNG00000022624)	GHITM (ENSPSNG00000022628)	GPR15LG (ENSPSNG00000022629)	CDHR1 (ENSPSNG00000022630)	LRIT2 (ENSPSNG00000022631)	LRIT1 (ENSPSNG00000022632)	RGR (ENSPSNG00000022633)	CCSER2 (ENSPSNG00000022634)	GRID1 (ENSPSNG00000022635)	WAPL (ENSPSNG00000022637)	OPN4 (ENSPSNG00000009696) #20	LDB3 (ENSPSNG00000010047) #21	BMPR1A (ENSPSNG00000010853) #22	ENSPSNG00000010893	ENSPSNG00000010942	MMRN2 (ENSPSNG00000011005) #23	SNCG (ENSPSNG00000011282) #24	ADIRF (ENSPSNG00000011421) #25	ENSPSNG00000011459 #26	ENSPSNG00000011506 #27	SHLD2 (ENSPSNG00000011586) #28	ENSPSNG00000011662	ENSPSNG00000011721 #29	ENSPSNG00000011938	ENSPSNG00000011998 #30	ENSPSNG00000012357	RBP3 (ENSPSNG00000012387)	GDF2 (ENSPSNG00000012442)
Dolphin	MODERN SPECIES	4282																BMPR1A (ENSTTRG00000008108) #22	MMRN2 (ENSTTRG00000008128) #23	SNCG (ENSTTRG00000008137) #24	ADIRF (ENSTTRG00000008141) #25	ENSTTRG00000008143 #26	GLUD1 (ENSTTRG00000008145) #27	ENSTTRG00000008152 #28
Sperm whale	MODERN SPECIES	12	PRXL2A (ENSPCTG00005006403)	SH2D4B (ENSPCTG00005006438)	ENSPCTG00005006456	NRG3 (ENSPCTG00005006486)	GHITM (ENSPCTG00005006615)	GPR15LG (ENSPCTG00005006634)	CDHR1 (ENSPCTG00005006669)	LRIT2 (ENSPCTG00005006723)	LRIT1 (ENSPCTG00005006744)	RGR (ENSPCTG00005006808)	CCSER2 (ENSPCTG00005007133)	GRID1 (ENSPCTG00005007265)	ENSPCTG00005007337	WAPL (ENSPCTG00005007435)	ENSPCTG00005007553 #21	BMPR1A (ENSPCTG00005007585) #22	ENSPCTG00005007616	MMRN2 (ENSPCTG00005007633) #23	SNCG (ENSPCTG00005007663) #24	ADIRF (ENSPCTG00005007691) #25	ENSPCTG00005007704 #26	GLUD1 (ENSPCTG00005007726) #27	SHLD2 (ENSPCTG00005007810) #28	ENSPCTG00005007877	ENSPCTG00005007905 #29	GPRIN2 (ENSPCTG00005007937)	ENSPCTG00005007943	ENSPCTG00005007960	ENSPCTG00005008007	RBP3 (ENSPCTG00005008022)	GDF2 (ENSPCTG00005008038)
Blue whale	MODERN SPECIES	7	SH2D4B (ENSBMSG00010022475)	NRG3 (ENSBMSG00010022472)	ENSBMSG00010022469	ENSBMSG00010022468	ENSBMSG00010022467	CDHR1 (ENSBMSG00010022466)	LRIT2 (ENSBMSG00010022464)	LRIT1 (ENSBMSG00010022463)	RGR (ENSBMSG00010022461)	CCSER2 (ENSBMSG00010022458)	GRID1 (ENSBMSG00010022455)	WAPL (ENSBMSG00010022452)	OPN4 (ENSBMSG00010022449) #20	LDB3 (ENSBMSG00010022437) #21	ENSBMSG00010022435	BMPR1A (ENSBMSG00010022434) #22	MMRN2 (ENSBMSG00010022433) #23	ENSBMSG00010022431 #24	ADIRF (ENSBMSG00010022430) #25	ENSBMSG00010022429 #26	ENSBMSG00010022427 #27	SHLD2 (ENSBMSG00010022425) #28	ENSBMSG00010022424 #29	GPRIN2 (ENSBMSG00010022423)	ENSBMSG00010022422	ENSBMSG00010022420 #30	ENSBMSG00010022419	ZNF488 (ENSBMSG00010022418)	RBP3 (ENSBMSG00010022417)	GDF2 (ENSBMSG00010022416)	GDF10 (ENSBMSG00010022415)
Pecora	ANCESTRAL SPECIES	12	ENSGT00940000159732	ENSGT00940000156754.a.a	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A.e.a	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727.u	ENSGT00940000157727.t.b	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802
Yarkand deer	MODERN SPECIES	6	ENSCHYG00000016802	ENSCHYG00000016870	ENSCHYG00000016906	ENSCHYG00000017038	ENSCHYG00000017070	ENSCHYG00000017257	ENSCHYG00000017310	ENSCHYG00000017365	ENSCHYG00000017551	GRID1 (ENSCHYG00000017999)	ENSCHYG00000018093	ENSCHYG00000018106	WAPL (ENSCHYG00000018174)	OPN4 (ENSCHYG00000018551) #20	LDB3 (ENSCHYG00000018764) #21	BMPR1A (ENSCHYG00000019547) #22	MMRN2 (ENSCHYG00000019649) #23	SNCG (ENSCHYG00000019855) #24	ENSCHYG00000019927 #25	ENSCHYG00000019972 #26	ENSCHYG00000020027 #27	SHLD2 (ENSCHYG00000020150) #28	ENSCHYG00000020321 #29	GPRIN2 (ENSCHYG00000020386)	ENSCHYG00000020437	ENSCHYG00000020487 #30	ENSCHYG00000021019	ENSCHYG00000021080	RBP3 (ENSCHYG00000021102)	GDF2 (ENSCHYG00000021149)	GDF10 (ENSCHYG00000021188)
Percora_a	ANCESTRAL SPECIES	14	ENSGT00940000159732	ENSGT00940000156754.a.a	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A.e.a	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727.u	ENSGT00940000157727.t.b	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802
Bovidae	ANCESTRAL SPECIES	27	ENSGT00940000159732	ENSGT00940000156754.a.a	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A.e.a	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727.u	ENSGT00940000157727.t.b	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802
Bovinae	ANCESTRAL SPECIES	30	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A.e.a	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727.u	ENSGT00940000157727.t.b	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802
Bos	ANCESTRAL SPECIES	27	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A.e.a	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727.u	ENSGT00940000157727.t.b	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802
Bos_b	ANCESTRAL SPECIES	32	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A.e.a	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727.t.b	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214	ENSGT00940000160066
Cow	MODERN SPECIES	20	ENSBTAG00000051629	ENSBTAG00000052588	GHITM (ENSBTAG00000032829)	GPR15LG (ENSBTAG00000050197)	CDHR1 (ENSBTAG00000001231)	LRIT2 (ENSBTAG00000023987)	LRIT1 (ENSBTAG00000003442)	RGR (ENSBTAG00000015681)	CCSER2 (ENSBTAG00000017611)	ENSBTAG00000020609	GRID1 (ENSBTAG00000019623)	ENSBTAG00000052026	WAPL (ENSBTAG00000012213)	OPN4 (ENSBTAG00000032800) #20	LDB3 (ENSBTAG00000018707) #21	BMPR1A (ENSBTAG00000000231) #22	MMRN2 (ENSBTAG00000003510) #23	SNCG (ENSBTAG00000003515) #24	ADIRF (ENSBTAG00000032774)	ENSBTAG00000017946 #26	GLUD1 (ENSBTAG00000007540) #27	SHLD2 (ENSBTAG00000019194) #28	SYT15 (ENSBTAG00000018356) #29	GPRIN2 (ENSBTAG00000046597)	PPYR1 (ENSBTAG00000004760)	ENSBTAG00000051015	ANXA8L1 (ENSBTAG00000018499) #30	ENSBTAG00000052872	RBP3 (ENSBTAG00000005003)	GDF2 (ENSBTAG00000005004)	GDF10 (ENSBTAG00000001019)
Hybrid Bos Indicus	MODERN SPECIES	20	PRXL2A (ENSBIXG00005030789)	TSPAN14 (ENSBIXG00005030815)	SH2D4B (ENSBIXG00005030847)	NRG3 (ENSBIXG00005030869)	GHITM (ENSBIXG00005030889)	CDHR1 (ENSBIXG00005030897)	LRIT2 (ENSBIXG00005030907)	LRIT1 (ENSBIXG00005030911)	RGR (ENSBIXG00005030924)	CCSER2 (ENSBIXG00005030954)	ENSBIXG00005030980	GRID1 (ENSBIXG00005030992)	WAPL (ENSBIXG00005031003)	OPN4 (ENSBIXG00005031011) #20	LDB3 (ENSBIXG00005031036) #21	BMPR1A (ENSBIXG00005031085) #22	ENSBIXG00005031091	MMRN2 (ENSBIXG00005031095) #23	ENSBIXG00005031104	ENSBIXG00005031106	ENSBIXG00005031107 #27	ENSBIXG00005031111	SHLD2 (ENSBIXG00005031116) #28	ENSBIXG00005031122 #29	GPRIN2 (ENSBIXG00005031126)	ENSBIXG00005031127	ENSBIXG00005031141 #30	ENSBIXG00005031161	ENSBIXG00005031168	RBP3 (ENSBIXG00005031171)	GDF2 (ENSBIXG00005031173)
Bos_a	ANCESTRAL SPECIES	25	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A.e.a	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727.u	ENSGT00940000157727.t.b	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214
Wild yak	MODERN SPECIES	2555												ENSBMUG00000026760	WAPL (ENSBMUG00000026761)	OPN4 (ENSBMUG00000026765) #20	LDB3 (ENSBMUG00000026766) #21	BMPR1A (ENSBMUG00000026767) #22	MMRN2 (ENSBMUG00000026768) #23	ENSBMUG00000026769	SNCG (ENSBMUG00000026770) #24	ADIRF (ENSBMUG00000026771) #25	ENSBMUG00000026772 #26	ENSBMUG00000026773 #27	SHLD2 (ENSBMUG00000026774) #28	ENSBMUG00000026775 #29	GPRIN2 (ENSBMUG00000026776)	ENSBMUG00000026777	ENSBMUG00000026778 #30
Domestic yak	MODERN SPECIES	19	ENSBGRG00000026297	ENSBGRG00000026300	GHITM (ENSBGRG00000026306)	ENSBGRG00000026318	CDHR1 (ENSBGRG00000026334)	LRIT2 (ENSBGRG00000026359)	LRIT1 (ENSBGRG00000026365)	RGR (ENSBGRG00000026377)	CCSER2 (ENSBGRG00000026406)	ENSBGRG00000026437	GRID1 (ENSBGRG00000026440)	WAPL (ENSBGRG00000026454)	OPN4 (ENSBGRG00000026480) #20	LDB3 (ENSBGRG00000026515) #21	ENSBGRG00000026555	BMPR1A (ENSBGRG00000026562) #22	MMRN2 (ENSBGRG00000026568) #23	ENSBGRG00000026574 #24	ENSBGRG00000026583 #25	ENSBGRG00000026587 #26	ENSBGRG00000026591 #27	SHLD2 (ENSBGRG00000026610) #28	ENSBGRG00000026621 #29	GPRIN2 (ENSBGRG00000007040)	ENSBGRG00000007056	ENSBGRG00000007107 #30	ENSBGRG00000008116	ENSBGRG00000008235	RBP3 (ENSBGRG00000008305)	GDF2 (ENSBGRG00000008393)	ENSBGRG00000008415
American bison	MODERN SPECIES	3255			ENSBBBG00000010486	ENSBBBG00000010477	ENSBBBG00000010469	GPR15LG (ENSBBBG00000010463)	CDHR1 (ENSBBBG00000010458)	LRIT2 (ENSBBBG00000001821)	LRIT1 (ENSBBBG00000010448)	RGR (ENSBBBG00000010446)	CCSER2 (ENSBBBG00000008138)	GRID1 (ENSBBBG00000010400)	WAPL (ENSBBBG00000010375)	OPN4 (ENSBBBG00000010329) #20	LDB3 (ENSBBBG00000010306) #21	BMPR1A (ENSBBBG00000000071) #22	MMRN2 (ENSBBBG00000000083) #23	SNCG (ENSBBBG00000000096) #24	ADIRF (ENSBBBG00000000102) #25	ENSBBBG00000000110 #26	ENSBBBG00000000117 #27	SHLD2 (ENSBBBG00000000130) #28	ENSBBBG00000001741 #29	GPRIN2 (ENSBBBG00000001738)	ENSBBBG00000010248	ENSBBBG00000010235 #30	ENSBBBG00000010146	ENSBBBG00000010138	RBP3 (ENSBBBG00000010135)	GDF2 (ENSBBBG00000010131)	GDF10 (ENSBBBG00000010125)
Caprinae	ANCESTRAL SPECIES	26	ENSGT00940000159732	ENSGT00940000156754.a.a	ENSGT00940000156754.a.b	ENSGT00940000157251.kb.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A.e.a	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00390000015789.d.b.b	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214
Goat	MODERN SPECIES	20	ENSCHIG00000000316	ENSCHIG00000000283	ENSCHIG00000000249	ENSCHIG00000000175	GHITM (ENSCHIG00000000141)	CDHR1 (ENSCHIG00000000107)	LRIT2 (ENSCHIG00000000072)	LRIT1 (ENSCHIG00000009908)	RGR (ENSCHIG00000024790)	CCSER2 (ENSCHIG00000021791)	ENSCHIG00000018829	ENSCHIG00000016118	WAPL (ENSCHIG00000013731)	OPN4 (ENSCHIG00000009531) #20	LDB3 (ENSCHIG00000009814) #21	BMPR1A (ENSCHIG00000000448) #22	MMRN2 (ENSCHIG00000000413) #23	SNCG (ENSCHIG00000000377) #24	ADIRF (ENSCHIG00000000346) #25	ENSCHIG00000000311 #26	ENSCHIG00000000278 #27	SHLD2 (ENSCHIG00000000239) #28	ENSCHIG00000000200 #29	GPRIN2 (ENSCHIG00000018615)	ENSCHIG00000018601	ENSCHIG00000000097 #30	ENSCHIG00000000059	RBP3 (ENSCHIG00000011706)	GDF2 (ENSCHIG00000018131)	GDF10 (ENSCHIG00000010153)	ENSCHIG00000023856
Rambouillet Sheep	MODERN SPECIES	17	ENSOARG00020026269	ENSOARG00020026276	NRG3 (ENSOARG00020026281)	ENSOARG00020026284	GHITM (ENSOARG00020026292)	GPR15LG (ENSOARG00020026294)	CDHR1 (ENSOARG00020026297)	LRIT2 (ENSOARG00020026301)	LRIT1 (ENSOARG00020026303)	RGR (ENSOARG00020026308)	CCSER2 (ENSOARG00020026314)	GRID1 (ENSOARG00020026327)	WAPL (ENSOARG00020026341)	OPN4 (ENSOARG00020026353) #20	LDB3 (ENSOARG00020026361) #21	BMPR1A (ENSOARG00020026367) #22	MMRN2 (ENSOARG00020026370) #23	SNCG (ENSOARG00020026371) #24	ADIRF (ENSOARG00020026372) #25	ENSOARG00020026375 #26	GLUD1 (ENSOARG00020026378) #27	ENSOARG00020026382 #29	GPRIN2 (ENSOARG00020026386)	ENSOARG00020026387	ENSOARG00020026390 #30	ENSOARG00020026395	ZNF488 (ENSOARG00020026399)	RBP3 (ENSOARG00020026401)	GDF2 (ENSOARG00020026404)	GDF10 (ENSOARG00020026407)	PTPN20 (ENSOARG00020026411)
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	1166	ENSMMSG00000021280	ENSMMSG00000021262	ENSMMSG00000021237	GPR15LG (ENSMMSG00000021220)	CDHR1 (ENSMMSG00000021201)	LRIT2 (ENSMMSG00000021169)	LRIT1 (ENSMMSG00000021146)	RGR (ENSMMSG00000020985)	CCSER2 (ENSMMSG00000020914)	ENSMMSG00000020896	ENSMMSG00000020879	GRID1 (ENSMMSG00000020834)	ENSMMSG00000020715	OPN4 (ENSMMSG00000020622) #20	LDB3 (ENSMMSG00000020451) #21	ENSMMSG00000020370 #22	MMRN2 (ENSMMSG00000020346) #23	SNCG (ENSMMSG00000020320) #24	ADIRF (ENSMMSG00000020297) #25	ENSMMSG00000020257 #26	ENSMMSG00000020208 #27	SHLD2 (ENSMMSG00000020139) #28	ENSMMSG00000020096 #29	GPRIN2 (ENSMMSG00000020086)	ENSMMSG00000020079	ENSMMSG00000019872 #30	ENSMMSG00000019843	ENSMMSG00000019835	RBP3 (ENSMMSG00000019815)	GDF2 (ENSMMSG00000019804)	GDF10 (ENSMMSG00000019785)
Siberian musk deer	MODERN SPECIES	1134															ENSMMSG00000013576	ENSMMSG00000013560 #22	ENSMMSG00000013544	ENSMMSG00000013527	ENSMMSG00000013511	TMEM100 (ENSMMSG00000013494)	SMIM36 (ENSMMSG00000013486)	MMD (ENSMMSG00000013464)	HLF (ENSMMSG00000013443)	STXBP4 (ENSMMSG00000013388)	COX11 (ENSMMSG00000012972)	TOM1L1 (ENSMMSG00000012939)
Camelidae	ANCESTRAL SPECIES	4	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214	ENSGT00940000160066.b
Alpaca	MODERN SPECIES	143															LDB3 (ENSVPAG00000000477) #21	BMPR1A (ENSVPAG00000000478) #22
Arabian camel	MODERN SPECIES	2	ENSCDRG00005007739	ENSCDRG00005007794	ENSCDRG00005007837	GHITM (ENSCDRG00005007844)	GPR15LG (ENSCDRG00005007900)	CDHR1 (ENSCDRG00005008037)	LRIT2 (ENSCDRG00005010151)	LRIT1 (ENSCDRG00005010255)	RGR (ENSCDRG00005010360)	CCSER2 (ENSCDRG00005011191)	GRID1 (ENSCDRG00005011683)	WAPL (ENSCDRG00005011847)	ENSCDRG00005012026 #20	ENSCDRG00005012454 #21	ENSCDRG00005012659 #21	BMPR1A (ENSCDRG00005012764) #22	MMRN2 (ENSCDRG00005012817) #23	SNCG (ENSCDRG00005012944) #24	ADIRF (ENSCDRG00005013016) #25	ENSCDRG00005013050 #26	ENSCDRG00005013088 #27	SHLD2 (ENSCDRG00005013226) #28	ENSCDRG00005013292 #29	GPRIN2 (ENSCDRG00005013370)	ENSCDRG00005013393	ENSCDRG00005013438 #30	ENSCDRG00005013958 #20	ZNF488 (ENSCDRG00005014182)	RBP3 (ENSCDRG00005014199)	GDF2 (ENSCDRG00005014217)	GDF10 (ENSCDRG00005014232)
Laurasiatheria_b	ANCESTRAL SPECIES	15	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b.l ##27	ENSGT00910000147005	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727.u	ENSGT00940000157727.t.b	ENSGT00890000139463.a
Carnivora	ANCESTRAL SPECIES	16	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727.u	ENSGT00940000157727.t.b	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802
Caniformia	ANCESTRAL SPECIES	13	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727.u	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802
Canidae	ANCESTRAL SPECIES	7	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT00390000007046.b.a.a.hb.b	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00950000186100	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000000854.c.b.l ##27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727.u	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802
Canis_lupus	ANCESTRAL SPECIES	12	ENSGT00940000156754.a.b	ENSGT00390000015224.c.b.b.a.b.b.a	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT00390000007046.b.a.a.hb.b	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00950000186100	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727.u	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214
Dog	MODERN SPECIES	32	ENSCAFG00845016035	ENSCAFG00845005888	GHITM (ENSCAFG00845005910)	GPR15LG (ENSCAFG00845005930)	CDHR1 (ENSCAFG00845005965)	LRIT2 (ENSCAFG00845006028)	LRIT1 (ENSCAFG00845006057)	ENSCAFG00845006075	RGR (ENSCAFG00845006108)	CCSER2 (ENSCAFG00845006187)	ENSCAFG00845006251	GRID1 (ENSCAFG00845006283)	WAPL (ENSCAFG00845006393)	OPN4 (ENSCAFG00845006582) #20	LDB3 (ENSCAFG00845006724) #21	BMPR1A (ENSCAFG00845006910) #22	MMRN2 (ENSCAFG00845006994) #23	SNCG (ENSCAFG00845007049) #24	ADIRF (ENSCAFG00845007081) #25	ENSCAFG00845007112 #26	ENSCAFG00845007152 ##27	ENSCAFG00845007274 #28	ENSCAFG00845007404 #29	NPY4R (ENSCAFG00845007503)	ENSCAFG00845007693 #30	ENSCAFG00845008165	ZNF488 (ENSCAFG00845008319)	RBP3 (ENSCAFG00845008361)	GDF2 (ENSCAFG00845008392)	GDF10 (ENSCAFG00845008410)	DCP2 (ENSCAFG00845008467)
Dingo	MODERN SPECIES	324	GHITM (ENSCAFG00020013851)	GPR15LG (ENSCAFG00020013845)	CDHR1 (ENSCAFG00020013821)	LRIT2 (ENSCAFG00020013819)	LRIT1 (ENSCAFG00020013817)	ENSCAFG00020013806	RGR (ENSCAFG00020013803)	ENSCAFG00020013798	CCSER2 (ENSCAFG00020013790)	ENSCAFG00020013783	GRID1 (ENSCAFG00020013753)	ENSCAFG00020013732	WAPL (ENSCAFG00020012727)	OPN4 (ENSCAFG00020012667) #20	LDB3 (ENSCAFG00020012632) #21	BMPR1A (ENSCAFG00020012390) #22	MMRN2 (ENSCAFG00020012378) #23	SNCG (ENSCAFG00020012370) #24	ENSCAFG00020012369	ENSCAFG00020012367 #26	ENSCAFG00020012341 #27	SHLD2 (ENSCAFG00020012332) #28	ENSCAFG00020012325 #29	GPRIN2 (ENSCAFG00020012318)	ENSCAFG00020012316	ENSCAFG00020012309 #30	ZNF488 (ENSCAFG00020012306)	RBP3 (ENSCAFG00020012299)	GDF2 (ENSCAFG00020012297)	GDF10 (ENSCAFG00020012295)	ENSCAFG00020012287
Red fox	MODERN SPECIES	2	ENSVVUG00000025602	GHITM (ENSVVUG00000025608)	ENSVVUG00000025609	CDHR1 (ENSVVUG00000025648)	LRIT2 (ENSVVUG00000025806)	LRIT1 (ENSVVUG00000025807)	ENSVVUG00000025808	RGR (ENSVVUG00000025809)	CCSER2 (ENSVVUG00000025813)	GRID1 (ENSVVUG00000025834)	ENSVVUG00000025879	ENSVVUG00000025886	WAPL (ENSVVUG00000025891)	OPN4 (ENSVVUG00000025900) #20	LDB3 (ENSVVUG00000025903) #21	BMPR1A (ENSVVUG00000025904) #22	ENSVVUG00000025909 #23	ENSVVUG00000025910	ENSVVUG00000025911 #24	ENSVVUG00000025912 #24	ADIRF (ENSVVUG00000025913) #25	FAM25A (ENSVVUG00000025914)	ENSVVUG00000025916 ##27	SHLD2 (ENSVVUG00000025919) #28	ENSVVUG00000025932 #29	GPRIN2 (ENSVVUG00000025936)	ENSVVUG00000025939	ENSVVUG00000025942 #30	ENSVVUG00000025949	ZNF488 (ENSVVUG00000025960)	RBP3 (ENSVVUG00000025962)
Caniformia_b	ANCESTRAL SPECIES	10	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727.u	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802
Ursidae	ANCESTRAL SPECIES	5	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b.d	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b.d	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727.t.b	ENSGT00890000139463.a	ENSGT00390000014726.b	ENSGT00940000159802
Ursus	ANCESTRAL SPECIES	6	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b.d	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b.d	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.l ##27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00890000139463.a	ENSGT00390000014726.b	ENSGT00940000159802	ENSGT00940000157214	ENSGT00940000160066
Polar bear	MODERN SPECIES	197	PRXL2A (ENSUMAG00000014166)	TSPAN14 (ENSUMAG00000014172)	SH2D4B (ENSUMAG00000014184)	ENSUMAG00000014191	GHITM (ENSUMAG00000014200)	CDHR1 (ENSUMAG00000014204)	LRIT2 (ENSUMAG00000014223)	RGR (ENSUMAG00000014226)	CCSER2 (ENSUMAG00000014258)	ENSUMAG00000014262	GRID1 (ENSUMAG00000014265)	ENSUMAG00000014279	WAPL (ENSUMAG00000014284)	OPN4 (ENSUMAG00000014289) #20	LDB3 (ENSUMAG00000014291) #21	BMPR1A (ENSUMAG00000014295) #22	MMRN2 (ENSUMAG00000014302) #23	SNCG (ENSUMAG00000014308) #24	ENSUMAG00000014309	ENSUMAG00000014311 #26	ENSUMAG00000014372 ##27	SHLD2 (ENSUMAG00000015420) #28	ENSUMAG00000015426 #29	GPRIN2 (ENSUMAG00000015431)	ENSUMAG00000015436	ENSUMAG00000015441 #30	ZNF488 (ENSUMAG00000015457)	RBP3 (ENSUMAG00000015465)	GDF2 (ENSUMAG00000015485)	GDF10 (ENSUMAG00000015492)	ENSUMAG00000015535
American black bear	MODERN SPECIES	3570														OPN4 (ENSUAMG00000027390) #20	LDB3 (ENSUAMG00000027395) #21	BMPR1A (ENSUAMG00000027417) #22
Giant Panda	MODERN SPECIES	16	NRG3 (ENSAMEG00000002812)	GHITM (ENSAMEG00000009753)	ENSAMEG00000029479	GPR15LG (ENSAMEG00000029953)	CDHR1 (ENSAMEG00000009794)	LRIT2 (ENSAMEG00000009834)	LRIT1 (ENSAMEG00000009838)	RGR (ENSAMEG00000009851)	CCSER2 (ENSAMEG00000009866)	GRID1 (ENSAMEG00000009876)	WAPL (ENSAMEG00000009905)	ENSAMEG00000024384	ENSAMEG00000027199	OPN4 (ENSAMEG00000009912) #20	LDB3 (ENSAMEG00000009941) #21	BMPR1A (ENSAMEG00000009972) #22	MMRN2 (ENSAMEG00000009997) #23	ENSAMEG00000010004 #24	ADIRF (ENSAMEG00000010016) #25	ENSAMEG00000010018 #26	ENSAMEG00000010021 #27	ENSAMEG00000010047 #28	ENSAMEG00000010054 #29	GPRIN2 (ENSAMEG00000020069)	ENSAMEG00000020071	ENSAMEG00000010062 #30	ENSAMEG00000027228	ENSAMEG00000019898	RBP3 (ENSAMEG00000017640)	GDF2 (ENSAMEG00000023495)	GDF10 (ENSAMEG00000017645)
Mustelinae	ANCESTRAL SPECIES	31	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.b.b ##27	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727.u	ENSGT00890000139463.a	ENSGT00940000157727.t.b	ENSGT00390000014726
American mink	MODERN SPECIES	332												WAPL (ENSNVIG00000024598)	ENSNVIG00000024595	OPN4 (ENSNVIG00000024593) #20	LDB3 (ENSNVIG00000024586) #21	BMPR1A (ENSNVIG00000024576) #22	MMRN2 (ENSNVIG00000024564) #23	SYUG (ENSNVIG00000024554) #24	ADIRF (ENSNVIG00000024553) #25	ENSNVIG00000024551 #26	ENSNVIG00000024549 ##27	SHLD2 (ENSNVIG00000024540) #28	ENSNVIG00000024532 #29	GPRIN2 (ENSNVIG00000024530)	ENSNVIG00000024528	ENSNVIG00000024506 #30	ENSNVIG00000024480	ENSNVIG00000024476	RBP3 (ENSNVIG00000024472)	GDF2 (ENSNVIG00000024470)	GDF10 (ENSNVIG00000024468)
Ferret	MODERN SPECIES	278		ENSMPUG00000008487	GHITM (ENSMPUG00000008508)	GPR15LG (ENSMPUG00000008519)	CDHR1 (ENSMPUG00000008527)	LRIT2 (ENSMPUG00000008541)	LRIT1 (ENSMPUG00000008558)	RGR (ENSMPUG00000008582)	CCSER2 (ENSMPUG00000008592)	GRID1 (ENSMPUG00000008603)	ENSMPUG00000008678	WAPL (ENSMPUG00000008681)	ENSMPUG00000008696	OPN4 (ENSMPUG00000008699) #20	LDB3 (ENSMPUG00000008750) #21	BMPR1A (ENSMPUG00000008847) #22	MMRN2 (ENSMPUG00000008857) #23	SNCG (ENSMPUG00000008877) #24	ENSMPUG00000008934 #27	SHLD2 (ENSMPUG00000008946) #28	ENSMPUG00000008956 #29	GPRIN2 (ENSMPUG00000019516)	ENSMPUG00000019517	ENSMPUG00000008963 #30	ENSMPUG00000008973	ENSMPUG00000008983	ENSMPUG00000008988	RBP3 (ENSMPUG00000008997)	GDF2 (ENSMPUG00000009012)	GDF10 (ENSMPUG00000009015)	PTPN20 (ENSMPUG00000009020)
Felidae	ANCESTRAL SPECIES	14	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT00940000153299.c.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727.u	ENSGT00940000157727.t.b	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802
Panthera	ANCESTRAL SPECIES	8	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT00940000153299.c.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214	ENSGT00940000160066
Panthera_a	ANCESTRAL SPECIES	9	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT00940000153299.c.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214	ENSGT00940000160066
lion	MODERN SPECIES	11	NRG3 (ENSPLOG00000008323)	ENSPLOG00000008300	ENSPLOG00000008255	ENSPLOG00000008234	GHITM (ENSPLOG00000008205)	GPR15LG (ENSPLOG00000008181)	CDHR1 (ENSPLOG00000008089)	LRIT2 (ENSPLOG00000008047)	LRIT1 (ENSPLOG00000008018)	RGR (ENSPLOG00000007861)	CCSER2 (ENSPLOG00000007805)	GRID1 (ENSPLOG00000007714)	WAPL (ENSPLOG00000022015)	OPN4 (ENSPLOG00000021883) #20	LDB3 (ENSPLOG00000021595) #21	BMPR1A (ENSPLOG00000021503) #22	MMRN2 (ENSPLOG00000021472) #23	SNCG (ENSPLOG00000021447) #24	ADIRF (ENSPLOG00000021438) #25	ENSPLOG00000021426 #26	ENSPLOG00000021396 #27	SHLD2 (ENSPLOG00000021357) #28	ENSPLOG00000021321 #29	GPRIN2 (ENSPLOG00000021309)	ENSPLOG00000021298	ENSPLOG00000021198 #30	ENSPLOG00000021062	MAPK8 (ENSPLOG00000020978)	ARHGAP22 (ENSPLOG00000020857)	LRRC18 (ENSPLOG00000020817)	WDFY4 (ENSPLOG00000020595)
leopard	MODERN SPECIES	11	ENSPPRG00000019021	ENSPPRG00000018110	ENSPPRG00000022253	GHITM (ENSPPRG00000015349)	GPR15LG (ENSPPRG00000015158)	CDHR1 (ENSPPRG00000014914)	LRIT2 (ENSPPRG00000014434)	LRIT1 (ENSPPRG00000013656)	RGR (ENSPPRG00000013319)	CCSER2 (ENSPPRG00000012953)	GRID1 (ENSPPRG00000011939)	WAPL (ENSPPRG00000010735)	ENSPPRG00000010015	OPN4 (ENSPPRG00000009960) #20	LDB3 (ENSPPRG00000009226) #21	BMPR1A (ENSPPRG00000007800) #22	MMRN2 (ENSPPRG00000007550) #23	SNCG (ENSPPRG00000007274) #24	ADIRF (ENSPPRG00000007082) #25	ENSPPRG00000006999 #26	ENSPPRG00000006849 #27	SHLD2 (ENSPPRG00000006441) #28	ENSPPRG00000006053 #29	GPRIN2 (ENSPPRG00000021954)	ENSPPRG00000021933	ENSPPRG00000005065 #30	RBP3 (ENSPPRG00000003492)	GDF2 (ENSPPRG00000003460)	GDF10 (ENSPPRG00000003070)	ENSPPRG00000002770	FRMPD2 (ENSPPRG00000002679)
Tiger	MODERN SPECIES	408			ENSPTIG00000016550	ENSPTIG00000016796	GHITM (ENSPTIG00000017022)	GPR15LG (ENSPTIG00000017286)	CDHR1 (ENSPTIG00000017365)	LRIT2 (ENSPTIG00000017878)	LRIT1 (ENSPTIG00000018181)	RGR (ENSPTIG00000018307)	CCSER2 (ENSPTIG00000018603)	GRID1 (ENSPTIG00000019242)	WAPL (ENSPTIG00000019636)	OPN4 (ENSPTIG00000007105) #20	LDB3 (ENSPTIG00000007693) #21	BMPR1A (ENSPTIG00000010900) #22	MMRN2 (ENSPTIG00000011278) #23	SNCG (ENSPTIG00000011520) #24	ADIRF (ENSPTIG00000011608) #25	ENSPTIG00000012743 #26	ENSPTIG00000013163 ##27	SHLD2 (ENSPTIG00000013453) #28	ENSPTIG00000014045 #29	GPRIN2 (ENSPTIG00000002365)	ENSPTIG00000002387	ENSPTIG00000015547 #30	RBP3 (ENSPTIG00000017677)	GDF2 (ENSPTIG00000017943)	GDF10 (ENSPTIG00000018028)
Cat	MODERN SPECIES	242	TSPAN14 (ENSFCAG00000037107)	SH2D4B (ENSFCAG00000000713)	NRG3 (ENSFCAG00000014132)	ENSFCAG00000038749	GHITM (ENSFCAG00000001647)	GPR15LG (ENSFCAG00000041116)	CDHR1 (ENSFCAG00000001649)	LRIT2 (ENSFCAG00000001653)	LRIT1 (ENSFCAG00000032117)	RGR (ENSFCAG00000001655)	CCSER2 (ENSFCAG00000010441)	GRID1 (ENSFCAG00000011060)	WAPL (ENSFCAG00000015013)	OPN4 (ENSFCAG00000015018) #20	LDB3 (ENSFCAG00000015019) #21	BMPR1A (ENSFCAG00000027895) #22	MMRN2 (ENSFCAG00000007960) #23	SNCG (ENSFCAG00000007962) #24	ADIRF (ENSFCAG00000007964) #25	ENSFCAG00000049295 #26	ENSFCAG00000007969 #27	SHLD2 (ENSFCAG00000024707) #28	ENSFCAG00000000311 #29	GPRIN2 (ENSFCAG00000000312)	ENSFCAG00000011756	ENSFCAG00000011757 #30	ENSFCAG00000050359	ENSFCAG00000050611	ZNF488 (ENSFCAG00000040653)	RBP3 (ENSFCAG00000014855)	GDF10 (ENSFCAG00000008962)
Laurasiatheria_c	ANCESTRAL SPECIES	15	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b.l ##27	ENSGT00910000147005	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727.t.a	ENSGT00940000157727.t.b	ENSGT00890000139463.a
Equus	ANCESTRAL SPECIES	60	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT01090000263464	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00910000147005	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30	ENSGT00940000157727.t.a	ENSGT00940000157727.t.b.a	ENSGT00940000157727.t.b.b	ENSGT00890000139463.a
Donkey	MODERN SPECIES	11	NRG3 (ENSEASG00005028600)	ENSEASG00005019881	ENSEASG00005024420	GHITM (ENSEASG00005019880)	GPR15LG (ENSEASG00005029369)	CDHR1 (ENSEASG00005019661)	LRIT2 (ENSEASG00005019612)	LRIT1 (ENSEASG00005019608)	RGR (ENSEASG00005019607)	CCSER2 (ENSEASG00005019603)	ENSEASG00005031816	GRID1 (ENSEASG00005019598)	WAPL (ENSEASG00005019579)	OPN4 (ENSEASG00005019568) #20	LDB3 (ENSEASG00005019565) #21	BMPR1A (ENSEASG00005019517) #22	MMRN2 (ENSEASG00005029841) #23	SNCG (ENSEASG00005019495) #24	ENSEASG00005019493	ENSEASG00005024103	ADIRF (ENSEASG00005027138) #25	ENSEASG00005027835 #26	ENSEASG00005019482 #27	ENSEASG00005019480 #28	ENSEASG00005019478 #29	GPRIN2 (ENSEASG00005026034)	ENSEASG00005026748	ENSEASG00005019473 #30	ENSEASG00005027287	ENSEASG00005025795	ENSEASG00005030992
Horse	MODERN SPECIES		SH2D4B (ENSECAG00000004160)	ENSECAG00000059942	ENSECAG00000054628	NRG3 (ENSECAG00000020751)	GHITM (ENSECAG00000019064)	CDHR1 (ENSECAG00000009475)	LRIT2 (ENSECAG00000009070)	LRIT1 (ENSECAG00000003092)	RGR (ENSECAG00000019050)	CCSER2 (ENSECAG00000014169)	ENSECAG00000046168	GRID1 (ENSECAG00000021446)	WAPL (ENSECAG00000016925)	OPN4 (ENSECAG00000010886) #20	LDB3 (ENSECAG00000024538) #21	BMPR1A (ENSECAG00000020461) #22	MMRN2 (ENSECAG00000017808) #23	SNCG (ENSECAG00000013252) #25	ENSECAG00000007371 #27	SHLD2 (ENSECAG00000001626) #28	ENSECAG00000022004 #29	GPRIN2 (ENSECAG00000004381)	ENSECAG00000035414	ENSECAG00000020129 #30	ENSECAG00000044706	ENSECAG00000017380	ENSECAG00000028672	ENSECAG00000037135	ZNF488 (ENSECAG00000059477)	RBP3 (ENSECAG00000013868)	GDF2 (ENSECAG00000012596)
Chiroptera	ANCESTRAL SPECIES	6	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214	ENSGT00940000160066	ENSGT00940000161964
Megabat	MODERN SPECIES	3919																BMPR1A (ENSPVAG00000016667) #22	MMRN2 (ENSPVAG00000016672) #23	SNCG (ENSPVAG00000016676) #24	ADIRF (ENSPVAG00000016678) #25	ENSPVAG00000016680 #26
Microchiroptera	ANCESTRAL SPECIES	5	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00390000015172	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b.l ##27	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b.k.a #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00890000139463.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214	ENSGT00940000160066
Greater horseshoe bat	MODERN SPECIES	7	NRG3 (ENSRFEG00010019871)	ENSRFEG00010020047	GHITM (ENSRFEG00010020061)	GPR15LG (ENSRFEG00010020100)	CDHR1 (ENSRFEG00010020126)	LRIT2 (ENSRFEG00010020160)	LRIT1 (ENSRFEG00010020185)	RGR (ENSRFEG00010020222)	CCSER2 (ENSRFEG00010020289)	ENSRFEG00010020355	GRID1 (ENSRFEG00010020370)	ENSRFEG00010020391	WAPL (ENSRFEG00010020421)	OPN4 (ENSRFEG00010020490) #20	LDB3 (ENSRFEG00010020559) #21	BMPR1A (ENSRFEG00010020664) #22	ENSRFEG00010020689	MMRN2 (ENSRFEG00010020706) #23	SNCG (ENSRFEG00010020732) #24	ENSRFEG00010020750 #25	ENSRFEG00010020761 #26	ENSRFEG00010020776 #27	SHLD2 (ENSRFEG00010020825) #28	ENSRFEG00010020855 #29	GPRIN2 (ENSRFEG00010020875)	ENSRFEG00010020880	ZNF488 (ENSRFEG00010020883)	RBP3 (ENSRFEG00010020893)	GDF2 (ENSRFEG00010020905)	GDF10 (ENSRFEG00010020914)	PTPN20 (ENSRFEG00010020938)
Microbat	MODERN SPECIES	1235													WAPL (ENSMLUG00000006613)	OPN4 (ENSMLUG00000004967) #20	LDB3 (ENSMLUG00000004982) #21	BMPR1A (ENSMLUG00000009947) #22	MMRN2 (ENSMLUG00000009978) #23	SNCG (ENSMLUG00000010000) #24	ENSMLUG00000011268 ##27	SHLD2 (ENSMLUG00000007456) #28	ENSMLUG00000002953	ENSMLUG00000024583
Eulipotyphla	ANCESTRAL SPECIES	1743															ENSGT00940000154877.C #21	ENSGT00940000156225 #22
Common shrew	MODERN SPECIES	1621															LDB3 (ENSSARG00000001530) #21	BMPR1A (ENSSARG00000001581) #22
Hedgehog	MODERN SPECIES	1070																BMPR1A (ENSEEUG00000012417) #22
Atlantogenata	ANCESTRAL SPECIES	10	ENSGT00510000048896	ENSGT00390000000046	ENSGT00390000007221.a.b	ENSGT00950000182815.a.a.a.b	ENSGT00950000182898.a.a.b	ENSGT01050000244940.a.b	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30
Xenarthra	ANCESTRAL SPECIES	237												ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00940000161927	ENSGT00940000161044 #30
Armadillo	MODERN SPECIES	4546										GRID1 (ENSDNOG00000042469)	ENSDNOG00000031581	WAPL (ENSDNOG00000025433)	ENSDNOG00000033237	OPN4 (ENSDNOG00000048882) #20	LDB3 (ENSDNOG00000000562) #21	BMPR1A (ENSDNOG00000016718) #22	ENSDNOG00000041147 #23	SNCG (ENSDNOG00000031102) #24	ADIRF (ENSDNOG00000033404) #25	ENSDNOG00000005224 #26	ENSDNOG00000043039 #27	ENSDNOG00000000017 #28	ENSDNOG00000046427 #29	GPRIN2 (ENSDNOG00000016039)	ENSDNOG00000038129	ENSDNOG00000018174	ENSDNOG00000045634 #30
Sloth	MODERN SPECIES	841																BMPR1A (ENSCHOG00000006320) #22
Afrotheria	ANCESTRAL SPECIES	133	ENSGT00940000161631	ENSGT00940000162091	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00940000155509	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a
Tenrec	MODERN SPECIES	6670																ENSETEG00000007037 #22
Afrotheria_a	ANCESTRAL SPECIES	136	ENSGT00940000161631	ENSGT00940000162091	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00940000155509	ENSGT00940000156033	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000017446 #25	ENSGT00390000000786 #26	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a
Elephant	MODERN SPECIES	491	PRXL2A (ENSLAFG00000004468)	TSPAN14 (ENSLAFG00000016406)	SH2D4B (ENSLAFG00000006817)	ENSLAFG00000026283	GHITM (ENSLAFG00000009646)	CDHR1 (ENSLAFG00000014034)	LRIT1 (ENSLAFG00000028695)	RGR (ENSLAFG00000014674)	CCSER2 (ENSLAFG00000011324)	ENSLAFG00000008310	WAPL (ENSLAFG00000005848)	ENSLAFG00000023317	ENSLAFG00000011624	OPN4 (ENSLAFG00000006004) #20	LDB3 (ENSLAFG00000006009) #21	BMPR1A (ENSLAFG00000005832) #22	MMRN2 (ENSLAFG00000012825) #23	SNCG (ENSLAFG00000032751) #24	ENSLAFG00000011199 #26	ENSLAFG00000012059 #27	SHLD2 (ENSLAFG00000022147) #28	ENSLAFG00000016206 #29	GPRIN2 (ENSLAFG00000016467)	MRPS24 (ENSLAFG00000011905)	URGCP (ENSLAFG00000031339)	DBNL (ENSLAFG00000004682)	PGAM2 (ENSLAFG00000026429)	POLM (ENSLAFG00000010390)	AEBP1 (ENSLAFG00000014436)	POLD2 (ENSLAFG00000022905)	MYL7 (ENSLAFG00000022961)
Hyrax	MODERN SPECIES	781																BMPR1A (ENSPCAG00000013254) #22
Marsupialia	ANCESTRAL SPECIES		ENSGT00950000183076.a.b.b.a.a	ENSGT00390000010652.C	ENSGT00940000156111	ENSGT00940000158282	ENSGT00940000155716	ENSGT00940000153997.b.a.a	ENSGT00940000154371.b.i.b	ENSGT00940000154371.b.i.a	ENSGT00940000153912.A	ENSGT00940000156068.b	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00940000163402.b.a.a.a.a	ENSGT00950000182965.a.b.b.a.b	ENSGT01030000234534.B.a.b	ENSGT00940000159819	ENSGT00940000157737	ENSGT00940000160977	ENSGT00940000157327	ENSGT00950000182989.A	ENSGT00940000160380	ENSGT00940000155707	ENSGT00940000153533.a	ENSGT00940000159422	ENSGT00940000157796
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00950000183076.a.b.b.a.a	ENSGT00390000010652.C	ENSGT00940000156111	ENSGT00940000158282.f	ENSGT00940000155716	ENSGT00940000153997.b.a.a	ENSGT00940000154371.b.i.b	ENSGT00940000154371.b.i.a	ENSGT00940000153912.A	ENSGT00940000156068.b	ENSGT00940000155910.g	ENSGT00390000015768	ENSGT00940000154612.l	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00940000163402.b.a.a.a.a	ENSGT00950000182965.a.b.b.a.b	ENSGT01030000234534.B.a.b	ENSGT00940000159819	ENSGT00940000157737	ENSGT00940000160977	ENSGT00940000157327	ENSGT00950000182989.A	ENSGT00940000160380	ENSGT00940000155707	ENSGT00940000153533.a	ENSGT00940000159422	ENSGT00940000157796
Diprotodontia	ANCESTRAL SPECIES	6	ENSGT00390000014666.b	ENSGT00940000163116	ENSGT00950000183076.a.b.b.a.a	ENSGT00390000010652.C	ENSGT00940000156111	ENSGT00940000158282.f	ENSGT00940000155716	ENSGT00940000153997.b.a.a	ENSGT00940000153912.A	ENSGT00940000156068.b	ENSGT00940000155910.g	ENSGT00390000015768	ENSGT00940000154612.l	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00940000163402.b.a.a.a.a
Diprotodontia_a	ANCESTRAL SPECIES	7	ENSGT00950000183076.a.b.b.a.a	ENSGT00390000010652.C	ENSGT00940000156111	ENSGT00940000158282.f	ENSGT00940000155716	ENSGT00940000153997.b.a.a	ENSGT00940000154371.b.i.b.a.b	ENSGT00940000154371.b.i.b.b	ENSGT00940000153912.A	ENSGT00940000156068.b	ENSGT00940000155910.g	ENSGT00390000015768	ENSGT00940000154612.l	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00940000163402.b.a.a.a.a
Common wonbat	MODERN SPECIES	1179	ALOX5 (ENSVURG00010015696)	MARCHF8 (ENSVURG00010015718)	ZFAND4 (ENSVURG00010015731)	ENSVURG00010015759	ENSVURG00010015818	ENSVURG00010015821	ENSVURG00010015823	CCSER2 (ENSVURG00010015832)	ENSVURG00010015860	ENSVURG00010015877	ENSVURG00010015882	WAPL (ENSVURG00010015908)	ENSVURG00010015969	OPN4 (ENSVURG00010015982) #20	LDB3 (ENSVURG00010015994) #21	BMPR1A (ENSVURG00010016012) #22	ENSVURG00010016018 #23	SNCG (ENSVURG00010016027) #24	ENSVURG00010016053
koala	MODERN SPECIES	57	ENSPCIG00000031656	ALOX5 (ENSPCIG00000022662)	MARCHF8 (ENSPCIG00000022658)	ZFAND4 (ENSPCIG00000022651)	ENSPCIG00000022605	ENSPCIG00000036580	ENSPCIG00000020917	ENSPCIG00000020916	CCSER2 (ENSPCIG00000020913)	ENSPCIG00000020912	GRID1 (ENSPCIG00000032856)	WAPL (ENSPCIG00000013332)	ENSPCIG00000017426	OPN4 (ENSPCIG00000000750) #20	LDB3 (ENSPCIG00000031216) #21	BMPR1A (ENSPCIG00000011599) #22	ENSPCIG00000024470 #23	ENSPCIG00000024473 #24
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000024244	ENSSHAG00000027720	ENSSHAG00000022795	ENSSHAG00000002064	ENSSHAG00000023219	ENSSHAG00000029057	ENSSHAG00000015607	ENSSHAG00000028704	ENSSHAG00000029846	ENSSHAG00000007904	ENSSHAG00000023967	WAPL (ENSSHAG00000009610)	ENSSHAG00000009404	OPN4 (ENSSHAG00000008435) #20	LDB3 (ENSSHAG00000007310) #21	BMPR1A (ENSSHAG00000005672) #22	ENSSHAG00000004694 #23	ENSSHAG00000004383 #24	ENSSHAG00000002530	ENSSHAG00000000967	ENSSHAG00000028319	ENSSHAG00000021979	ENSSHAG00000025673	ENSSHAG00000018484	ENSSHAG00000018402	ENSSHAG00000023911	ENSSHAG00000018208	ENSSHAG00000021263	ENSSHAG00000018008	CIB2 (ENSSHAG00000017984)	IDH3A (ENSSHAG00000024011)
Opossum	MODERN SPECIES		ENSMODG00000025717	ENSMODG00000042938	ENSMODG00000045956	ENSMODG00000029353	ENSMODG00000028868	ENSMODG00000040275	CCSER2 (ENSMODG00000010952)	ENSMODG00000010954	ENSMODG00000051387	ENSMODG00000029662	GRID1 (ENSMODG00000011030)	ENSMODG00000028223	WAPL (ENSMODG00000011102)	OPN4 (ENSMODG00000011114) #20	LDB3 (ENSMODG00000011146) #21	BMPR1A (ENSMODG00000011158) #22	ENSMODG00000011163 #23	SNCG (ENSMODG00000046065) #24	ENSMODG00000011252	ENSMODG00000011489	ENSMODG00000011517	ENSMODG00000025367	ADAMTS7 (ENSMODG00000011540)	ENSMODG00000048142	TBC1D2B (ENSMODG00000011556)	CIB2 (ENSMODG00000011624)	IDH3A (ENSMODG00000011642)	ACSBG1 (ENSMODG00000011666)	DNAJA4 (ENSMODG00000011688)	SKIC8 (ENSMODG00000011702)	CRABP1 (ENSMODG00000011710)
Platypus	MODERN SPECIES	14	DNAJB12 (ENSOANG00000046292)	MICU1 (ENSOANG00000001130)	MCU (ENSOANG00000001129)	OIT3 (ENSOANG00000029925)	PLA2G12B (ENSOANG00000046451)	P4HA1 (ENSOANG00000001125)	ENSOANG00000001123	ECD (ENSOANG00000001121)	FAM149B1 (ENSOANG00000001119)	DNAJC9 (ENSOANG00000037219)	CCSER2 (ENSOANG00000001117)	GRID1 (ENSOANG00000014787)	WAPL (ENSOANG00000030929)	ENSOANG00000010446 #20	LDB3 (ENSOANG00000008906) #21	BMPR1A (ENSOANG00000036756) #22	TMEM267 (ENSOANG00000042358)	C5orf34 (ENSOANG00000008911)	PAIP1 (ENSOANG00000007984)	NNT (ENSOANG00000014892)	FGF10 (ENSOANG00000042795)	MRPS30 (ENSOANG00000001659)	MAT1A (ENSOANG00000001657)	DYDC1 (ENSOANG00000004121)	ENSOANG00000045463	ENSOANG00000010863	TSPAN14 (ENSOANG00000010864)	SH2D4B (ENSOANG00000010865)	ENSOANG00000043336	GHITM (ENSOANG00000005402)	CDHR1 (ENSOANG00000007464)
Sauria	ANCESTRAL SPECIES	8	ENSGT00390000013594	ENSGT00940000156416	ENSGT00940000165908	ENSGT00950000183033.a.a.d	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00940000160064.a.a	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT01030000234528.A.a.b	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT01090000260051.b.a.a.b.b
Lepidosauria	ANCESTRAL SPECIES	8	ENSGT00940000159995	ENSGT00940000153335.a.b	ENSGT00940000154939	ENSGT00390000013594	ENSGT00940000156416	ENSGT00940000165908	ENSGT00950000183033.a.a.d	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT01030000234528.A.a.b	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT01090000260051.b.a.a.b.b
Episquamata	ANCESTRAL SPECIES	2	ENSGT00940000159995	ENSGT00940000153335.a.b	ENSGT00940000154939	ENSGT00390000013594	ENSGT00940000156416	ENSGT00940000165908	ENSGT00950000183033.a.a.d	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT01030000234528.A.a.b	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT01090000260051.b.a.a.b.b
Laterata	ANCESTRAL SPECIES		ENSGT00390000013594	ENSGT00940000156416	ENSGT00940000165908	ENSGT00950000183033.a.a.d	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00950000186100	ENSGT00530000064550.B	ENSGT00940000160064.a.a	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT01030000234528.A.a.b	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT01090000260051.b.a.a.b.b
Common wall lizard	MODERN SPECIES	13	ENSPMRG00000006559	ENSPMRG00000006552	ENSPMRG00000006544	FAM13C (ENSPMRG00000006533)	PHYHIPL (ENSPMRG00000006517)	BICC1 (ENSPMRG00000006483)	ENSPMRG00000006463	CCSER2 (ENSPMRG00000006451)	GRID1 (ENSPMRG00000006438)	ENSPMRG00000006430	ENSPMRG00000006424	ENSPMRG00000006414	WAPL (ENSPMRG00000006212)	OPN4 (ENSPMRG00000006154) #20	LDB3 (ENSPMRG00000006017) ##21	BMPR1A (ENSPMRG00000005964) #22	MMRN2 (ENSPMRG00000005946) #23	SNCG (ENSPMRG00000005935) #24	ENSPMRG00000005926 #27	SHLD2 (ENSPMRG00000005909) #28	ENSPMRG00000005898 #29	GPRIN2 (ENSPMRG00000005896)	ENSPMRG00000005888	NCOA4 (ENSPMRG00000005881)	ENSPMRG00000005870	PARG (ENSPMRG00000005853)	OGDHL (ENSPMRG00000005810)	C10orf53 (ENSPMRG00000005793)	CHAT (ENSPMRG00000005752)	ENSPMRG00000005735	RGR (ENSPMRG00000005722)
Argentine black and white tegu	MODERN SPECIES	56								GRID1 (ENSSMRG00000007230)	ENSSMRG00000007423	ENSSMRG00000007429	ENSSMRG00000007434	ENSSMRG00000007442	WAPL (ENSSMRG00000007443)	OPN4 (ENSSMRG00000007460) #20	LDB3 (ENSSMRG00000007469) ##21	BMPR1A (ENSSMRG00000007499) #22	MMRN2 (ENSSMRG00000007508) #23	SNCG (ENSSMRG00000007512) #24	ENSSMRG00000007530 #27	SHLD2 (ENSSMRG00000007539) #28	ENSSMRG00000007543 #29	GPRIN2 (ENSSMRG00000007545)	ENSSMRG00000007546	NCOA4 (ENSSMRG00000007552)	ENSSMRG00000007558	PARG (ENSSMRG00000007574)	OGDHL (ENSSMRG00000007582)	C10orf53 (ENSSMRG00000007595)	CHAT (ENSSMRG00000007598)	SLC18A3 (ENSSMRG00000007600)	RGR (ENSSMRG00000007601)
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00940000159995	ENSGT00940000153335.a.b	ENSGT00940000154939	ENSGT00390000013594	ENSGT00940000156416	ENSGT00940000165908	ENSGT00950000183033.a.a.d	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910.o.a	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT01030000234528.A.a.b	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT01090000260051.b.a.a.b.b
Elapidae	ANCESTRAL SPECIES	4	ENSGT00940000159995	ENSGT00940000153335.a.b	ENSGT00940000154939	ENSGT00390000013594	ENSGT00940000156416	ENSGT00940000165908	ENSGT00950000183033.a.a.d	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A.i	ENSGT00940000155910.o.a	ENSGT00390000015768	ENSGT00940000154877.C #21	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000158394	ENSGT00390000014082.b	ENSGT00530000063713.a	ENSGT00940000157470	ENSGT00940000164426	ENSGT01030000234543.D.b	ENSGT00940000158184	ENSGT00390000014320	ENSGT00940000157372.f	ENSGT00940000160190	ENSGT00940000154628.B
Elapidae_a	ANCESTRAL SPECIES	85	ENSGT00940000159995	ENSGT00940000153335.a.b	ENSGT00940000154939	ENSGT00390000013594	ENSGT00940000156416	ENSGT00940000165908	ENSGT00950000183033.a.a.d	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A.i	ENSGT00940000155910.o.a	ENSGT00390000015768	ENSGT00940000154877.C #21	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28
Acanthophiinae	ANCESTRAL SPECIES	70	ENSGT00940000159995	ENSGT00940000153335.a.b	ENSGT00940000154939	ENSGT00390000013594	ENSGT00940000156416	ENSGT00940000165908	ENSGT00950000183033.a.a.d	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A.i	ENSGT00940000155910.o.a	ENSGT00390000015768	ENSGT00940000154877.C #21	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00390000000984	ENSGT00530000063713.a	ENSGT00940000157470	ENSGT00940000164426	ENSGT01030000234543.D.b	ENSGT00940000158184.l	ENSGT00390000014320	ENSGT00940000157372.f	ENSGT00940000160190	ENSGT00940000154628.B	ENSGT00940000162682.A.a.b	ENSGT00940000155540.b.b
Eastern brown snake	MODERN SPECIES	50	RHOBTB1 (ENSPTXG00000004088)	CDK1 (ENSPTXG00000004089)	ANK3 (ENSPTXG00000004124)	CCDC6 (ENSPTXG00000017810)	SLC16A9 (ENSPTXG00000017811)	ENSPTXG00000017812	FAM13C (ENSPTXG00000017813)	PHYHIPL (ENSPTXG00000017814)	BICC1 (ENSPTXG00000017815)	ENSPTXG00000017885	CCSER2 (ENSPTXG00000017886)	GRID1 (ENSPTXG00000017888)	WAPL (ENSPTXG00000017890)	ENSPTXG00000017984 #21	ENSPTXG00000017986 ##21	BMPR1A (ENSPTXG00000017987) #22	MMRN2 (ENSPTXG00000017993) #23	ENSPTXG00000017997 #27	SHLD2 (ENSPTXG00000017999) #28	ENSPTXG00000018001	ENSPTXG00000018003	ENSPTXG00000018006	ENSPTXG00000018007	ADK (ENSPTXG00000018009)	ENSPTXG00000018015	ENSPTXG00000018016	ENSPTXG00000018017	DUSP29 (ENSPTXG00000018019)	DUSP13 (ENSPTXG00000018020)	ENSPTXG00000018022	ENSPTXG00000018028
Mainland tiger snake	MODERN SPECIES	60	ENSNSUG00000020145	ENSNSUG00000020144	CCDC6 (ENSNSUG00000020143)	SLC16A9 (ENSNSUG00000020142)	ENSNSUG00000020141	FAM13C (ENSNSUG00000020140)	PHYHIPL (ENSNSUG00000020139)	BICC1 (ENSNSUG00000020138)	ENSNSUG00000020137	CCSER2 (ENSNSUG00000020135)	GRID1 (ENSNSUG00000020132)	WAPL (ENSNSUG00000020088)	ENSNSUG00000020087	ENSNSUG00000020086 #21	ENSNSUG00000020085 ##21	BMPR1A (ENSNSUG00000020083) #22	MMRN2 (ENSNSUG00000020082) #23	ENSNSUG00000020081	ENSNSUG00000020079 #27	SHLD2 (ENSNSUG00000020078) #28	NRBF2 (ENSNSUG00000020077)	ZNF365 (ENSNSUG00000020076)	ENSNSUG00000020075	ENSNSUG00000020074	VCL (ENSNSUG00000020072)	AP3M1 (ENSNSUG00000020071)	ADK (ENSNSUG00000020070)	ENSNSUG00000020069	ENSNSUG00000020068	DUSP29 (ENSNSUG00000020066)	ENSNSUG00000020065
Blue-lipped sea krait	MODERN SPECIES	2852																BMPR1A (ENSLLTG00000016901) #22	ENSLLTG00000016903 #23
Indian cobra	MODERN SPECIES	3	RHOBTB1 (ENSNNAG00000016035)	ANK3 (ENSNNAG00000016271)	CCDC6 (ENSNNAG00000017939)	SLC16A9 (ENSNNAG00000017949)	ENSNNAG00000017952	FAM13C (ENSNNAG00000017954)	PHYHIPL (ENSNNAG00000017962)	BICC1 (ENSNNAG00000017967)	ENSNNAG00000017977	CCSER2 (ENSNNAG00000017985)	ENSNNAG00000018008	GRID1 (ENSNNAG00000018016)	WAPL (ENSNNAG00000018052)	ENSNNAG00000018074 #21	ENSNNAG00000018086 ##21	BMPR1A (ENSNNAG00000018090) #22	MMRN2 (ENSNNAG00000003069) #23	SNCG (ENSNNAG00000003079) #24	ENSNNAG00000003089 #27	ENSNNAG00000003109 #28	EGR2 (ENSNNAG00000003126)	ADO (ENSNNAG00000003138)	ZNF365 (ENSNNAG00000003154)	RTKN2 (ENSNNAG00000003167)	ENSNNAG00000003188	ENSNNAG00000003212	VCL (ENSNNAG00000003234)	AP3M1 (ENSNNAG00000003266)	ADK (ENSNNAG00000003283)	KAT6B (ENSNNAG00000003335)	DUSP29 (ENSNNAG00000003367)
Lizard	MODERN SPECIES	813														ENSACAG00000038784 ##21	ENSACAG00000014492 ##21	BMPR1A (ENSACAG00000014543) #22	ENSACAG00000034918	MMRN2 (ENSACAG00000014748) #23	SNCG (ENSACAG00000014759) #24	ENSACAG00000014769 #27	SHLD2 (ENSACAG00000014871) #28	ENSACAG00000014901 #29	ENSACAG00000045025	GPRIN2 (ENSACAG00000014929)	ENSACAG00000038376	ENSACAG00000036950	ENSACAG00000041985	ENSACAG00000029003	PARG (ENSACAG00000015000)	ENSACAG00000036187	OGDHL (ENSACAG00000015082)
tuatara	MODERN SPECIES	926																BMPR1A (ENSSPUG00000006099) #22	SNCG (ENSSPUG00000006142) #24	ENSSPUG00000006153	ENSSPUG00000006159 #27	ENSSPUG00000006169 #28	ENSSPUG00000006178 #28	ENSSPUG00000006203 #29	ENSSPUG00000006219	ENSSPUG00000006226	NCOA4 (ENSSPUG00000006239)	ENSSPUG00000006246	PARG (ENSSPUG00000006276)
Archelosauria	ANCESTRAL SPECIES	10	ENSGT00390000013594	ENSGT00940000156416	ENSGT00940000165908	ENSGT00950000183033.a.a.d	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00940000160064.a.a	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT01030000234528.A.a.b	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT01090000260051.b.a.a.b.b
Archosauria	ANCESTRAL SPECIES	7	ENSGT00940000154939	ENSGT00390000013594	ENSGT00940000156416	ENSGT00940000165908	ENSGT00950000183033.a.a.d	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT01030000234528.A.a.b	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT01090000260051.b.a.a.b.b
Aves	ANCESTRAL SPECIES	6	ENSGT00940000154939	ENSGT00390000013594	ENSGT00940000156416	ENSGT00940000165908	ENSGT00950000183033.a.a.d	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033
Neognathae	ANCESTRAL SPECIES	7	ENSGT00940000154939	ENSGT00390000013594	ENSGT00940000156416	ENSGT00940000165908	ENSGT00950000183033.a.a.d	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033
Neognathae_b	ANCESTRAL SPECIES	8	ENSGT00940000154939	ENSGT00390000013594	ENSGT00940000156416	ENSGT00940000165908	ENSGT00950000183033.a.a.d	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00960000189706	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033
Passeriformes	ANCESTRAL SPECIES	10	ENSGT00940000153335.a.b	ENSGT00940000154939	ENSGT00390000013594	ENSGT00940000156416	ENSGT00940000165908	ENSGT00950000183033.a.a.d	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00960000189706	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033
Great tit	MODERN SPECIES	26	TMEM26 (ENSPMJG00000015414)	RHOBTB1 (ENSPMJG00000015418)	CDK1 (ENSPMJG00000015419)	ANK3 (ENSPMJG00000015421)	CCDC6 (ENSPMJG00000015422)	SLC16A9 (ENSPMJG00000015424)	FAM13C (ENSPMJG00000015425)	PHYHIPL (ENSPMJG00000015426)	BICC1 (ENSPMJG00000015427)	ENSPMJG00000015428	CCSER2 (ENSPMJG00000015429)	GRID1 (ENSPMJG00000015434)	WAPL (ENSPMJG00000015436)	OPN4 (ENSPMJG00000015437) #20	LDB3 (ENSPMJG00000015439) ##21	BMPR1A (ENSPMJG00000015440) #22	MMRN2 (ENSPMJG00000015441) #23	SNCG (ENSPMJG00000015442) #24	ENSPMJG00000015445 #27	SHLD2 (ENSPMJG00000015446) #28	ENSPMJG00000015447 #29	ENSPMJG00000015449	NCOA4 (ENSPMJG00000015450)	ENSPMJG00000015451	PARG (ENSPMJG00000015453)	OGDHL (ENSPMJG00000015454)	CHAT (ENSPMJG00000015456)	SLC18A3 (ENSPMJG00000015457)	RGR (ENSPMJG00000015458)	LRIT1 (ENSPMJG00000015459)	LRIT2 (ENSPMJG00000015460)
Passeriformes_d	ANCESTRAL SPECIES	7	ENSGT00940000153335.a.b	ENSGT00940000154939	ENSGT00390000013594	ENSGT00940000156416	ENSGT00940000165908	ENSGT00950000183033.a.a.d	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00960000189706	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033
Passeriformes_g	ANCESTRAL SPECIES	8	ENSGT00940000153335.a.b	ENSGT00940000154939	ENSGT00390000013594	ENSGT00940000156416	ENSGT00940000165908	ENSGT00950000183033.a.a.d	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00960000189706	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033
Passeroidea	ANCESTRAL SPECIES	7	ENSGT00940000153335.a.b	ENSGT00940000154939	ENSGT00390000013594	ENSGT00940000156416	ENSGT00940000165908	ENSGT00950000183033.a.a.d	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00960000189706	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033
Common canary	MODERN SPECIES	7	RHOBTB1 (ENSSCAG00000003777)	CDK1 (ENSSCAG00000003772)	ANK3 (ENSSCAG00000003722)	CCDC6 (ENSSCAG00000003683)	SLC16A9 (ENSSCAG00000003669)	ENSSCAG00000003664	FAM13C (ENSSCAG00000003651)	PHYHIPL (ENSSCAG00000003646)	BICC1 (ENSSCAG00000003632)	CCSER2 (ENSSCAG00000003626)	GRID1 (ENSSCAG00000003610)	WAPL (ENSSCAG00000003589)	OPN4 (ENSSCAG00000003560) #20	LDB3 (ENSSCAG00000003542) #21	ENSSCAG00000003507 ##21	BMPR1A (ENSSCAG00000003502) #22	SNCG (ENSSCAG00000003499) #24	MMRN2 (ENSSCAG00000003491) #23	ENSSCAG00000003430 #27	SHLD2 (ENSSCAG00000003407) #28	ENSSCAG00000003398 #29	GPRIN2 (ENSSCAG00000003385)	NCOA4 (ENSSCAG00000003372)	ENSSCAG00000003354	PARG (ENSSCAG00000003216)	OGDHL (ENSSCAG00000003178)	ENSSCAG00000003174	CHAT (ENSSCAG00000003169)	SLC18A3 (ENSSCAG00000003166)	RGR (ENSSCAG00000003160)	LRIT1 (ENSSCAG00000003156)
Zebra finch	MODERN SPECIES	28	RHOBTB1 (ENSTGUG00000005309)	CDK1 (ENSTGUG00000005332)	ANK3 (ENSTGUG00000005344)	CCDC6 (ENSTGUG00000005517)	SLC16A9 (ENSTGUG00000005527)	FAM13C (ENSTGUG00000005544)	PHYHIPL (ENSTGUG00000005576)	BICC1 (ENSTGUG00000005584)	ENSTGUG00000026694	CCSER2 (ENSTGUG00000027495)	GRID1 (ENSTGUG00000005621)	WAPL (ENSTGUG00000005657)	OPN4 (ENSTGUG00000005687) #20	ENSTGUG00000005701 #21	ENSTGUG00000029529 ##21	BMPR1A (ENSTGUG00000005714) #22	MMRN2 (ENSTGUG00000005738) #23	SNCG (ENSTGUG00000005741) #24	ENSTGUG00000005750 #27	SHLD2 (ENSTGUG00000028097) #28	ENSTGUG00000005816	ENSTGUG00000005802 #29	NCOA4 (ENSTGUG00000005818)	ENSTGUG00000024616	PARG (ENSTGUG00000005848)	OGDHL (ENSTGUG00000005897)	CHAT (ENSTGUG00000005959)	SLC18A3 (ENSTGUG00000005989)	LRIT1 (ENSTGUG00000006007)	RGR (ENSTGUG00000005992)	LRIT2 (ENSTGUG00000006014)
Medium ground finch	MODERN SPECIES	3											ENSGFOG00000014753	GRID1 (ENSGFOG00000014749)	WAPL (ENSGFOG00000014739)	OPN4 (ENSGFOG00000014737) #20	ENSGFOG00000014734 #21	BMPR1A (ENSGFOG00000014731) #22	MMRN2 (ENSGFOG00000014728) #23	SNCG (ENSGFOG00000014726) #24	ENSGFOG00000014723 #27	SHLD2 (ENSGFOG00000014722) #28	ENSGFOG00000014720 #29	ENSGFOG00000014717	NCOA4 (ENSGFOG00000014714)	ENSGFOG00000014710	PARG (ENSGFOG00000014707)	OGDHL (ENSGFOG00000014702)	ENSGFOG00000014701	CHAT (ENSGFOG00000014698)	SLC18A3 (ENSGFOG00000014697)	RGR (ENSGFOG00000014695)	LRIT1 (ENSGFOG00000014692)
Flycatcher	MODERN SPECIES	25	RHOBTB1 (ENSFALG00000013316)	CDK1 (ENSFALG00000013320)	ANK3 (ENSFALG00000013352)	CCDC6 (ENSFALG00000002256)	SLC16A9 (ENSFALG00000002254)	ENSFALG00000002252	FAM13C (ENSFALG00000002251)	PHYHIPL (ENSFALG00000023335)	BICC1 (ENSFALG00000002247)	ENSFALG00000002246	CCSER2 (ENSFALG00000002244)	GRID1 (ENSFALG00000006632)	WAPL (ENSFALG00000006637)	OPN4 (ENSFALG00000006645) #20	LDB3 (ENSFALG00000006660) ##21	BMPR1A (ENSFALG00000006680) #22	MMRN2 (ENSFALG00000006694) #23	SNCG (ENSFALG00000006698) #24	ENSFALG00000006708 #27	SHLD2 (ENSFALG00000006729) #28	ENSFALG00000006734 #29	ENSFALG00000006738	ENSFALG00000006744	ENSFALG00000006749	PARG (ENSFALG00000006752)	OGDHL (ENSFALG00000006758)	ENSFALG00000024801	CHAT (ENSFALG00000006774)	SLC18A3 (ENSFALG00000006793)	RGR (ENSFALG00000006797)	LRIT1 (ENSFALG00000006804)
Neognathae_c	ANCESTRAL SPECIES	8	ENSGT00940000153335.a.b	ENSGT00940000154939	ENSGT00390000013594	ENSGT00940000156416	ENSGT00940000165908	ENSGT00950000183033.a.a.d	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033	ENSGT00940000159143
Kakapo	MODERN SPECIES	22	ENSSHBG00005009384	CCDC6 (ENSSHBG00005009374)	SLC16A9 (ENSSHBG00005009362)	ENSSHBG00005009350	FAM13C (ENSSHBG00005009336)	PHYHIPL (ENSSHBG00005009322)	BICC1 (ENSSHBG00005009291)	ENSSHBG00005009277	CCSER2 (ENSSHBG00005009269)	ENSSHBG00005009262	GRID1 (ENSSHBG00005009153)	ENSSHBG00005009103	WAPL (ENSSHBG00005009076)	OPN4 (ENSSHBG00005009019) #20	LDB3 (ENSSHBG00005008710) ##21	BMPR1A (ENSSHBG00005008673) #22	MMRN2 (ENSSHBG00005008667) #23	SNCG (ENSSHBG00005008661) #24	ENSSHBG00005008655 #27	SHLD2 (ENSSHBG00005008639) #28	ENSSHBG00005008628 #29	ENSSHBG00005008622	NCOA4 (ENSSHBG00005008606)	ENSSHBG00005008599	PARG (ENSSHBG00005008585)	OGDHL (ENSSHBG00005008575)	CHAT (ENSSHBG00005008537)	SLC18A3 (ENSSHBG00005008532)	RGR (ENSSHBG00005008522)	LRIT1 (ENSSHBG00005008514)	LRIT2 (ENSSHBG00005008512)
Golden eagle	MODERN SPECIES	2	RHOBTB1 (ENSACCG00020001933)	CDK1 (ENSACCG00020001913)	ANK3 (ENSACCG00020001733)	CCDC6 (ENSACCG00020001637)	SLC16A9 (ENSACCG00020001608)	ENSACCG00020001594	FAM13C (ENSACCG00020001578)	PHYHIPL (ENSACCG00020001564)	BICC1 (ENSACCG00020001541)	ENSACCG00020001525	CCSER2 (ENSACCG00020001488)	GRID1 (ENSACCG00020001452)	WAPL (ENSACCG00020001216)	OPN4 (ENSACCG00020001169) #20	LDB3 (ENSACCG00020001082) ##21	BMPR1A (ENSACCG00020001010) #22	MMRN2 (ENSACCG00020000985) #23	SNCG (ENSACCG00020000966) #24	ENSACCG00020000948 #27	SHLD2 (ENSACCG00020000930) #28	ENSACCG00020000910 #29	ENSACCG00020000898	NCOA4 (ENSACCG00020000878)	ENSACCG00020000854	PARG (ENSACCG00020000827)	OGDHL (ENSACCG00020000780)	CHAT (ENSACCG00020000693)	SLC18A3 (ENSACCG00020000659)	RGR (ENSACCG00020000634)	LRIT1 (ENSACCG00020000615)	LRIT2 (ENSACCG00020000584)
Galloanserae	ANCESTRAL SPECIES	6	ENSGT00940000153335.a.b	ENSGT00940000154939	ENSGT00390000013594	ENSGT00940000156416	ENSGT00940000165908	ENSGT00950000183033.a.a.d	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033
Anatidae	ANCESTRAL SPECIES	4	ENSGT00940000153335.a.b	ENSGT00940000154939	ENSGT00390000013594	ENSGT00940000156416	ENSGT00940000165908	ENSGT00950000183033.a.a.d	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00570000079168.b.a	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033	ENSGT00940000159143
Duck	MODERN SPECIES	24	ENSAPLG00000028830	ENSAPLG00000010455	CDK1 (ENSAPLG00000010270)	ANK3 (ENSAPLG00000008610)	CCDC6 (ENSAPLG00000008230)	SLC16A9 (ENSAPLG00000008084)	FAM13C (ENSAPLG00000015441)	PHYHIPL (ENSAPLG00000015409)	BICC1 (ENSAPLG00000015162)	ENSAPLG00000015155	CCSER2 (ENSAPLG00000014916)	ENSAPLG00000031257	GRID1 (ENSAPLG00000014832)	WAPL (ENSAPLG00000014722)	LDB3 (ENSAPLG00000014462) ##21	BMPR1A (ENSAPLG00000013998) #22	MMRN2 (ENSAPLG00000013958) #23	SNCG (ENSAPLG00000013906) #24	ENSAPLG00000013478 #27	SHLD2 (ENSAPLG00000013430) #28	ENSAPLG00000002369	NCOA4 (ENSAPLG00000013221)	ENSAPLG00000013120	PARG (ENSAPLG00000013100)	OGDHL (ENSAPLG00000012565)	C10orf53 (ENSAPLG00000022667)	CHAT (ENSAPLG00000012172)	RGR (ENSAPLG00000011960)	LRIT1 (ENSAPLG00000011953)	LRIT2 (ENSAPLG00000011945)	CDHR1 (ENSAPLG00000011604)
Pink-footed goose	MODERN SPECIES	19	CDK1 (ENSABRG00000020817)	ANK3 (ENSABRG00000021305)	CCDC6 (ENSABRG00000022191)	SLC16A9 (ENSABRG00000022195)	ENSABRG00000022196	FAM13C (ENSABRG00000022199)	PHYHIPL (ENSABRG00000022205)	BICC1 (ENSABRG00000022208)	ENSABRG00000022211	CCSER2 (ENSABRG00000022214)	GRID1 (ENSABRG00000022242)	ENSABRG00000022244	WAPL (ENSABRG00000022247)	OPN4 (ENSABRG00000022284) #20	LDB3 (ENSABRG00000022292) ##21	BMPR1A (ENSABRG00000022297) #22	MMRN2 (ENSABRG00000022299) #23	SNCG (ENSABRG00000022300) #24	ENSABRG00000022307 #27	SHLD2 (ENSABRG00000022323) #28	ENSABRG00000022324	NCOA4 (ENSABRG00000022326)	ENSABRG00000022327	PARG (ENSABRG00000022333)	OGDHL (ENSABRG00000022371)	ENSABRG00000022455	CHAT (ENSABRG00000022456)	SLC18A3 (ENSABRG00000022459)	RGR (ENSABRG00000000739)	LRIT1 (ENSABRG00000000755)	LRIT2 (ENSABRG00000000779)
Phasianidae	ANCESTRAL SPECIES	6	ENSGT00390000014794.b	ENSGT00940000159995.v	ENSGT00940000153335.a.b	ENSGT00940000154939	ENSGT00390000013594	ENSGT00940000156416	ENSGT00950000183033.a.a.d	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00960000189069	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033
Japanese quail	MODERN SPECIES	24						FAM13C (ENSCJPG00005012302)	PHYHIPL (ENSCJPG00005012304)	BICC1 (ENSCJPG00005012305)	CCSER2 (ENSCJPG00005012310)	ENSCJPG00005012311	GRID1 (ENSCJPG00005012320)	ENSCJPG00005012328	WAPL (ENSCJPG00005012332)	OPN4 (ENSCJPG00005012334) #20	LDB3 (ENSCJPG00005012352) ##21	BMPR1A (ENSCJPG00005012357) #22	MMRN2 (ENSCJPG00005012358) #23	SNCG (ENSCJPG00005012359) #24	ENSCJPG00005012360	ENSCJPG00005012361 #27	SHLD2 (ENSCJPG00005012362) #28	ENSCJPG00005012363 #29	ENSCJPG00005012364	NCOA4 (ENSCJPG00005012365)	ENSCJPG00005012366	PARG (ENSCJPG00005012368)	OGDHL (ENSCJPG00005012575)	CHAT (ENSCJPG00005012577)	SLC18A3 (ENSCJPG00005012637)	RGR (ENSCJPG00005012638)	LRIT1 (ENSCJPG00005012640)
Phasianidae_b	ANCESTRAL SPECIES	6	ENSGT00940000153335.a.b	ENSGT00940000154939	ENSGT00390000013594	ENSGT00940000156416.f	ENSGT00950000183033.b	ENSGT00940000156416.e	ENSGT00950000183033.a.a.d	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00960000189069	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033
Chicken	MODERN SPECIES	35	ENSGALG00010009796	ENSGALG00010009822	ENSGALG00010009840	ENSGALG00010009883	ENSGALG00010009920	ENSGALG00010009993	FAM13C (ENSGALG00010010127)	PHYHIPL (ENSGALG00010010185)	BICC1 (ENSGALG00010010226)	ENSGALG00010010234	CCSER2 (ENSGALG00010010267)	GRID1 (ENSGALG00010010313)	WAPL (ENSGALG00010010333)	OPN4 (ENSGALG00010010341) #20	LDB3 (ENSGALG00010010438) ##21	BMPR1A (ENSGALG00010010465) #22	MMRN2 (ENSGALG00010010472) #23	SNCG (ENSGALG00010010521) #24	ADIRF (ENSGALG00010010541)	GLUD2 (ENSGALG00010010578) #27	SHLD2 (ENSGALG00010010596) #28	GPRIN2 (ENSGALG00010010698)	ENSGALG00010010711 #29	NCOA4 (ENSGALG00010010749)	TIMM23B (ENSGALG00010010768)	PARG (ENSGALG00010010780)	OGDHL (ENSGALG00010010822)	ENSGALG00010010830	CHAT (ENSGALG00010010839)	SLC18A3 (ENSGALG00010011152)	RGR (ENSGALG00010010848)
Turkey	MODERN SPECIES	28	ENSMGAG00000003671	ENSMGAG00000003706	ENSMGAG00000003748	ENSMGAG00000018295	ENSMGAG00000022108	ENSMGAG00000002692	ENSMGAG00000002715	BICC1 (ENSMGAG00000002729)	ENSMGAG00000018755	ENSMGAG00000002772	ENSMGAG00000002785	ENSMGAG00000020940	WAPL (ENSMGAG00000002579)	OPN4 (ENSMGAG00000002543) #20	LDB3 (ENSMGAG00000002507) ##21	BMPR1A (ENSMGAG00000002464) #22	MMRN2 (ENSMGAG00000002452) #23	SNCG (ENSMGAG00000002416) #24	ENSMGAG00000020477	ENSMGAG00000002437 #27	SHLD2 (ENSMGAG00000002403) #28	ENSMGAG00000002378 #29	ENSMGAG00000016165	ENSMGAG00000002354	ENSMGAG00000019927	PARG (ENSMGAG00000002289)	OGDHL (ENSMGAG00000002206)	CHAT (ENSMGAG00000002171)	RGR (ENSMGAG00000002156)	LRIT1 (ENSMGAG00000002140)	ENSMGAG00000017258
African ostrich	MODERN SPECIES	210										GRID1 (ENSSCUG00000003026)	ENSSCUG00000003023	WAPL (ENSSCUG00000003022)	OPN4 (ENSSCUG00000003021) #20	LDB3 (ENSSCUG00000003019) #21	ENSSCUG00000003018 ##21	BMPR1A (ENSSCUG00000003017) #22	MMRN2 (ENSSCUG00000003016) #23	SNCG (ENSSCUG00000003015) #24	ENSSCUG00000003009 #27	SHLD2 (ENSSCUG00000003005) #28	ENSSCUG00000003003 #29	ENSSCUG00000003001	NCOA4 (ENSSCUG00000002999)	ENSSCUG00000002997	PARG (ENSSCUG00000002971)	OGDHL (ENSSCUG00000002953)	CHAT (ENSSCUG00000002950)	RGR (ENSSCUG00000002946)	LRIT1 (ENSSCUG00000002944)	LRIT2 (ENSSCUG00000002942)	CDHR1 (ENSSCUG00000002939)
Australian saltwater crocodile	MODERN SPECIES	68				FAM13C (ENSCPRG00005010704)	ENSCPRG00005010696	ENSCPRG00005010694	BICC1 (ENSCPRG00005010676)	ENSCPRG00005010656	CCSER2 (ENSCPRG00005010649)	ENSCPRG00005010630	GRID1 (ENSCPRG00005010624)	ENSCPRG00005010613	WAPL (ENSCPRG00005010588)	ENSCPRG00005010536 ##21	ENSCPRG00005010512	BMPR1A (ENSCPRG00005010505) #22	MMRN2 (ENSCPRG00005010499) #23	SNCG (ENSCPRG00005010457) #24	ENSCPRG00005010442 #27	SHLD2 (ENSCPRG00005010439) #28	ENSCPRG00005010417 #29	ENSCPRG00005010411	ENSCPRG00005010406	NCOA4 (ENSCPRG00005010393)	ENSCPRG00005010387	PARG (ENSCPRG00005010371)	OGDHL (ENSCPRG00005010352)	C10orf53 (ENSCPRG00005010350)	CHAT (ENSCPRG00005010336)	SLC18A3 (ENSCPRG00005010331)	RGR (ENSCPRG00005010314)
Cryptodira	ANCESTRAL SPECIES	6	ENSGT00390000013594	ENSGT00940000156416	ENSGT00950000183033.a.a.d.l	ENSGT00950000183033.a.a.d.k	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00940000160064.a.a	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT01030000234528.A.a.b	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT01090000260051.b.a.a.b.b
Testudinoidea	ANCESTRAL SPECIES	2	ENSGT00390000013594	ENSGT00940000156416	ENSGT00950000183033.a.a.d.l	ENSGT00950000183033.a.a.d.k	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00940000160064.a.a	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT01030000234528.A.a.b	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT01090000260051.b.a.a.b.b
Emydidae	ANCESTRAL SPECIES	6	ENSGT00940000154939	ENSGT00390000013594	ENSGT00940000156416	ENSGT00950000183033.a.a.d.l	ENSGT00950000183033.a.a.d.k	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00940000160064.a.a	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT01030000234528.A.a.b	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT01090000260051.b.a.a.b.b
painted turtle	MODERN SPECIES	737	ENSCPBG00000007317	ENSCPBG00000007321	ENSCPBG00000007325	ENSCPBG00000007332	MBL2 (ENSCPBG00000007336)	ENSCPBG00000007342	ENSCPBG00000007345	ENSCPBG00000007374	ENSCPBG00000007378	ENSCPBG00000007387	ENSCPBG00000007410	ENSCPBG00000007413	WAPL (ENSCPBG00000007425)	OPN4 (ENSCPBG00000007440) #20	LDB3 (ENSCPBG00000007467) ##21	BMPR1A (ENSCPBG00000007506) #22	MMRN2 (ENSCPBG00000007516) #23	SNCG (ENSCPBG00000007521) #24	ENSCPBG00000007530 #27	SHLD2 (ENSCPBG00000007540) #28	ENSCPBG00000007549 #29	ENSCPBG00000007557	ENSCPBG00000007571	NCOA4 (ENSCPBG00000007614)	ENSCPBG00000007631	PARG (ENSCPBG00000007647)	OGDHL (ENSCPBG00000007662)	C10orf53 (ENSCPBG00000007681)	CHAT (ENSCPBG00000007694)	SLC18A3 (ENSCPBG00000007705)	RGR (ENSCPBG00000007711)
Three-toed box turtle	MODERN SPECIES	69																BMPR1A (ENSTMTG00000004229) #22	MMRN2 (ENSTMTG00000004283) #23	SNCG (ENSTMTG00000004537) #24	ENSTMTG00000004589 #27	SHLD2 (ENSTMTG00000004625) #28	ENSTMTG00000004653 #29	ENSTMTG00000004676	ENSTMTG00000004702	NCOA4 (ENSTMTG00000004763)	ENSTMTG00000004799	PARG (ENSTMTG00000004841)	OGDHL (ENSTMTG00000004926)	C10orf53 (ENSTMTG00000005635)	CHAT (ENSTMTG00000005649)	SLC18A3 (ENSTMTG00000005688)	RGR (ENSTMTG00000005697)
Testudinidae	ANCESTRAL SPECIES	9	ENSGT00390000013594	ENSGT00940000156416	ENSGT00950000183033.a.a.d.l	ENSGT00950000183033.a.a.d.k	ENSGT00390000014563.a.b	ENSGT00940000156276	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00530000064550.B	ENSGT00940000160064.a.a	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.C #21	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24	ENSGT00390000000854.c.b #27	ENSGT00390000003133 #28	ENSGT00940000160819 #29	ENSGT00570000079168.b.a	ENSGT01030000234528.A.a.b	ENSGT00390000008403	ENSGT00390000001094	ENSGT00390000003652.c	ENSGT00950000183125.b.a.b	ENSGT00390000002871	ENSGT01060000248556.A.b	ENSGT00940000159449	ENSGT01090000260051.b.a.a.b.b
Goode s thornscrub tortoise	MODERN SPECIES	21	ENSGEVG00005014449	CCDC6 (ENSGEVG00005015749)	SLC16A9 (ENSGEVG00005015777)	ENSGEVG00005015815	FAM13C (ENSGEVG00005015846)	PHYHIPL (ENSGEVG00005016036)	BICC1 (ENSGEVG00005016114)	ENSGEVG00005016223	CCSER2 (ENSGEVG00005016287)	GRID1 (ENSGEVG00005016326)	ENSGEVG00005016405	ENSGEVG00005016435	WAPL (ENSGEVG00005016466)	OPN4 (ENSGEVG00005016499) #20	LDB3 (ENSGEVG00005016610) ##21	BMPR1A (ENSGEVG00005016812) #22	MMRN2 (ENSGEVG00005016898) #23	SNCG (ENSGEVG00005017061) #24	ENSGEVG00005017081 #27	SHLD2 (ENSGEVG00005017123) #28	ENSGEVG00005017151 #29	ENSGEVG00005017210	ENSGEVG00005017234	NCOA4 (ENSGEVG00005017354)	ENSGEVG00005017387	PARG (ENSGEVG00005017410)	OGDHL (ENSGEVG00005017522)	C10orf53 (ENSGEVG00005017963)	CHAT (ENSGEVG00005017981)	SLC18A3 (ENSGEVG00005018018)	RGR (ENSGEVG00005018057)
Abingdon island giant tortoise	MODERN SPECIES	747																BMPR1A (ENSCABG00000009416) #22	MMRN2 (ENSCABG00000009446) #23	SNCG (ENSCABG00000009448) #24	ENSCABG00000009457 #27	ENSCABG00000009459 #28
Chinese turtle	MODERN SPECIES	217													WAPL (ENSPSIG00000009223)	OPN4 (ENSPSIG00000008873) #20	LDB3 (ENSPSIG00000008718) ##21	BMPR1A (ENSPSIG00000007367) #22	MMRN2 (ENSPSIG00000007342) #23	SNCG (ENSPSIG00000007189) #24	ENSPSIG00000006260 #27	SHLD2 (ENSPSIG00000006149) #28	ENSPSIG00000005616 #29	ENSPSIG00000005564	ENSPSIG00000005556	NCOA4 (ENSPSIG00000005369)	ENSPSIG00000005340	PARG (ENSPSIG00000004766)	OGDHL (ENSPSIG00000004028)	C10orf53 (ENSPSIG00000004025)	CHAT (ENSPSIG00000003844)	SLC18A3 (ENSPSIG00000000541)	RGR (ENSPSIG00000003741)
Anura	ANCESTRAL SPECIES	126	ENSGT00950000182815.a.a.a.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000160058.h	ENSGT00510000048896	ENSGT00940000164026.o.b	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00940000165645	ENSGT00390000007586.a.a	ENSGT00940000153912.A	ENSGT00940000155910	ENSGT00390000015768	ENSGT01100000263502.B.a.a #20	ENSGT00940000154877.A ##21	ENSGT00940000156225 #22	ENSGT01030000234633.C.a #23	ENSGT00950000183175.A #24
Leishan spiny toad	MODERN SPECIES	9	ENSLLEG00000017406	ENSLLEG00000017495	ENSLLEG00000017583	ENSLLEG00000017602	CCSER2 (ENSLLEG00000017659)	ENSLLEG00000017996	ENSLLEG00000018014	ENSLLEG00000018087	ENSLLEG00000018355	ENSLLEG00000018382	WAPL (ENSLLEG00000018468)	ENSLLEG00000019373	OPN4 (ENSLLEG00000019397) #20	LDB3 (ENSLLEG00000019559) ##21	ENSLLEG00000020682	BMPR1A (ENSLLEG00000020720) #22	MMRN2 (ENSLLEG00000021026) #23	SNCG (ENSLLEG00000021105) #24	ENSLLEG00000021156	ENSLLEG00000021178	ENSLLEG00000021229	ENSLLEG00000021254	ENSLLEG00000021301	ENSLLEG00000021389	ENSLLEG00000021426	ENSLLEG00000021478	ENSLLEG00000021505	ENSLLEG00000021546	ENSLLEG00000021565	ENSLLEG00000021594	ENSLLEG00000021655
Frog	MODERN SPECIES	7	XB5893022 [provisional] (ENSXETG00000027560)	TBATA (ENSXETG00000033778)	mttp.2 (ENSXETG00000027557)	ENSXETG00000003098	ENSXETG00000003099	ENSXETG00000044108	ccser2 (ENSXETG00000030589)	ENSXETG00000042525	grid1 (ENSXETG00000036937)	ENSXETG00000043016	ENSXETG00000040032	wapl (ENSXETG00000020555)	ENSXETG00000044455	opn4 (ENSXETG00000034251) #20	ldb3 (ENSXETG00000003653) ##21	bmpr1a (ENSXETG00000003655) #22	mmrn2 (ENSXETG00000030791) #23	sncg (ENSXETG00000003657) #24	ENSXETG00000046369	glud1 (ENSXETG00000034277) #27	syt15 (ENSXETG00000008157) #29	homeobox100496651-provisional (ENSXETG00000038582)	bms1 (ENSXETG00000008158)	ENSXETG00000048488	ENSXETG00000044003	ret (ENSXETG00000005422)	csgalnact2 (ENSXETG00000000615)	rasgef1a (ENSXETG00000000607)	XB5952892 [provisional] (ENSXETG00000024763)	sftpa2 (ENSXETG00000009325)	ENSXETG00000034456
Coelacanth	MODERN SPECIES	2366																BMPR1A (ENSLACG00000001839) #22	MMRN2 (ENSLACG00000003002) #23	SNCG (ENSLACG00000004743) #24	glud1a (ENSLACG00000006724) #27	ENSLACG00000022260 #28