Bovidae	ANCESTRAL SPECIES	5	ENSGT00950000182858.B.a.d	ENSGT00940000161652	ENSGT00940000154030.a.b #9	ENSGT00390000013670 #10	ENSGT00940000157701 #11	ENSGT00940000156464 #12	ENSGT00940000156714 #13	ENSGT01030000234564.a.a.a.a.b #14	ENSGT00940000155623 #15	ENSGT00390000003990.k #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #24	ENSGT00390000013305.a.a #25	ENSGT00940000154645.A #26	ENSGT00950000182995.e.a.a.a.fb.a #27	ENSGT00390000007900 #28	ENSGT00390000004263.b #29	ENSGT00940000155646 #30	ENSGT00940000160213 #31	ENSGT00940000154459.B #32	ENSGT00940000153916.B #33	ENSGT01030000234517.D #34	ENSGT00940000155734 #35	ENSGT00390000008041.C #36	ENSGT01100000263518.A.a.a.b #37
Caprinae	ANCESTRAL SPECIES	9	ENSGT00940000154706.ib #7	ENSGT00940000161652	ENSGT00940000154030.a.b #9	ENSGT00390000013670 #10	ENSGT00940000157701 #11	ENSGT00940000156464.a #12	ENSGT00940000156714 #13	ENSGT01030000234564.a.a.a.a.b #14	ENSGT00940000155623 #15	ENSGT00390000003990.k #16	ENSGT00940000155699.d #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #24	ENSGT00390000013305.a.a #25	ENSGT00940000154645.A #26	ENSGT00950000182995.e.a.a.a.fb.a.a #27	ENSGT00390000007900 #28	ENSGT00390000004263.b #29	ENSGT00940000155646 #30	ENSGT00940000160213 #31	ENSGT00940000154459.B #32	ENSGT00940000153916.B #33	ENSGT01030000234517.D #34	ENSGT00940000155734 #35	ENSGT00390000008041.C #36	ENSGT01100000263518.A.a.a.b #37
Rambouillet Sheep	MODERN SPECIES	19	ENSOARG00020006554 #7	ENSOARG00020006589 #8	CMPK2 (ENSOARG00020006720) #9	ENSOARG00020006787 #10	RNF144A (ENSOARG00020006856) #11	ID2 (ENSOARG00020006940) #12	KIDINS220 (ENSOARG00020007030) #13	MBOAT2 (ENSOARG00020007653) #14	ASAP2 (ENSOARG00020007758) #15	ITGB1BP1 (ENSOARG00020008178) #16	CPSF3 (ENSOARG00020008301) #17	IAH1 (ENSOARG00020008401) #18	ADAM17 (ENSOARG00020008512) #19	YWHAQ (ENSOARG00020008682) #20	TAF1B (ENSOARG00020008727) #21	GRHL1 (ENSOARG00020008773) #22	KLF11 (ENSOARG00020008965) #23	CYS1 (ENSOARG00020009035) #24	ENSOARG00020009097 #25	HPCAL1 (ENSOARG00020009151) #26	ODC1 (ENSOARG00020009225) #27	NOL10 (ENSOARG00020009305) #28	ATP6V1C2 (ENSOARG00020009600) #29	PDIA6 (ENSOARG00020009823) #30	KCNF1 (ENSOARG00020010045) #31	C2orf50 (ENSOARG00020010067) #32	SLC66A3 (ENSOARG00020010159) #33	ROCK2 (ENSOARG00020010271) #34	E2F6 (ENSOARG00020011096) #35	GREB1 (ENSOARG00020011244) #36	NTSR2 (ENSOARG00020012412) #37
Goat	DUPLICATION
Goat	MODERN SPECIES	2	CMPK2 (ENSCHIG00000012790) #9	RSAD2 (ENSCHIG00000021832) #10	RNF144A (ENSCHIG00000016336) #11	ENSCHIG00000018361 #12	KIDINS220 (ENSCHIG00000026710) #13	MBOAT2 (ENSCHIG00000026251) #14	ENSCHIG00000012410	ASAP2 (ENSCHIG00000022796) #15	ENSCHIG00000020028 #16	CPSF3 (ENSCHIG00000013973) #17	IAH1 (ENSCHIG00000016467) #18	ADAM17 (ENSCHIG00000013595) #19	YWHAQ (ENSCHIG00000012589) #20	ENSCHIG00000012158	TAF1B (ENSCHIG00000013783) #21	ENSCHIG00000026755 #22	KLF11 (ENSCHIG00000011294) #23	CYS1 (ENSCHIG00000018115) #24	ENSCHIG00000004531	RRM2 (ENSCHIG00000009694) #25	HPCAL1 (ENSCHIG00000019475) #26	ENSCHIG00000027003 #27	NOL10 (ENSCHIG00000012935) #28	ATP6V1C2 (ENSCHIG00000017272) #29	PDIA6 (ENSCHIG00000007838) #30	KCNF1 (ENSCHIG00000012739) #31	C2orf50 (ENSCHIG00000019292) #32	SLC66A3 (ENSCHIG00000016355) #33	ROCK2 (ENSCHIG00000013173) #34	E2F6 (ENSCHIG00000016333) #35	GREB1 (ENSCHIG00000017667) #36
Goat	MODERN SPECIES	10	CNP (ENSCHIG00000007203)	DNAJC7 (ENSCHIG00000026453)	NKIRAS2 (ENSCHIG00000027127)	ZNF385C (ENSCHIG00000013858)	DHX58 (ENSCHIG00000017011)	KAT2A (ENSCHIG00000021124)	HSPB9 (ENSCHIG00000011056)	RAB5C (ENSCHIG00000012960)	KCNH4 (ENSCHIG00000004460)	HCRT (ENSCHIG00000025119)	GHDC (ENSCHIG00000008301)	STAT5B (ENSCHIG00000021723)	STAT5A (ENSCHIG00000022084)	STAT3 (ENSCHIG00000020307)	CAVIN1 (ENSCHIG00000021967)	ENSCHIG00000010030 #22	ATP6V0A1 (ENSCHIG00000023886)	NAGLU (ENSCHIG00000025669)	HSD17B1 (ENSCHIG00000024608)	COASY (ENSCHIG00000015825)	MLX (ENSCHIG00000008566)	PSMC3IP (ENSCHIG00000016634)	RETREG3 (ENSCHIG00000021347)	TUBG1 (ENSCHIG00000023630)	TUBG2 (ENSCHIG00000017871)	PLEKHH3 (ENSCHIG00000009375)	CCR10 (ENSCHIG00000006150)	CNTNAP1 (ENSCHIG00000021718)	EZH1 (ENSCHIG00000021460)	RAMP2 (ENSCHIG00000009603)	VPS25 (ENSCHIG00000015624)
Bovinae	ANCESTRAL SPECIES	4	ENSGT00950000182858.B.b.b	ENSGT00950000182858.B.a.d	ENSGT00990000204082	ENSGT00390000013670 #10	ENSGT00940000157701 #11	ENSGT00940000156464 #12	ENSGT00940000156714 #13	ENSGT01030000234564.a.a.a.a.b #14	ENSGT00940000155623 #15	ENSGT00390000003990.k #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #24	ENSGT00390000013305.a.a #25	ENSGT00940000154645.A #26	ENSGT00950000182995.e.a.a.a.fb.a #27	ENSGT00390000007900 #28	ENSGT00390000004263.b #29	ENSGT00940000155646 #30	ENSGT00940000160213 #31	ENSGT00940000154459.B #32	ENSGT00940000153916.B #33	ENSGT01030000234517.D #34	ENSGT00990000203553.c.b.o.b	ENSGT00940000155734 #35	ENSGT00390000008041.C #36
Bos	ANCESTRAL SPECIES	5	ENSGT00950000182858.B.a.d	ENSGT00990000204082	ENSGT00390000013670 #10	ENSGT00940000157701 #11	ENSGT00940000156464 #12	ENSGT00940000156714 #13	ENSGT01030000234564.a.a.a.a.b #14	ENSGT00940000155623 #15	ENSGT00390000003990.k #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.b ##20	ENSGT01100000263481.n.a.a.a.a.a.a.a.a.a.a.a.b	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #24	ENSGT00390000013305.a.a #25	ENSGT00940000154645.A #26	ENSGT00950000182995.e.a.a.a.fb.a #27	ENSGT00390000007900 #28	ENSGT01100000263480.a.a.b.a.a.a.b.a.a.a.a.a.a.a.a.a	ENSGT00390000004263.b #29	ENSGT00940000155646.c #30	ENSGT00940000160213 #31	ENSGT00940000154459.B #32	ENSGT00940000153916.B #33	ENSGT00990000203553.c.b.o.b	ENSGT01030000234517.D #34	ENSGT00940000155734 #35
Bos_a	ANCESTRAL SPECIES	6	ENSGT00940000161652	ENSGT00940000154030.a.b #9	ENSGT00390000013670 #10	ENSGT00940000157701 #11	ENSGT00940000156464 #12	ENSGT00940000156714 #13	ENSGT01030000234564.a.a.a.a.b #14	ENSGT00940000155623 #15	ENSGT00390000003990.k #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT01100000263481.n.a.a.a.a.a.a.a.a.a.a.a.b	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #24	ENSGT00390000013305.a.a #25	ENSGT00940000154645.A #26	ENSGT00950000182995.e.a.a.a.fb.a #27	ENSGT00390000007900 #28	ENSGT01100000263480.a.a.b.a.a.a.b.a.a.a.a.a.a.a.a.a	ENSGT00390000004263.b #29	ENSGT00940000155646.c #30	ENSGT00940000160213 #31	ENSGT00940000154459.B #32	ENSGT00940000153916.B #33	ENSGT01030000234517.D #34	ENSGT00990000203553.c.b.o.b	ENSGT00940000155734 #35
Domestic yak	MODERN SPECIES	28	RSAD2 (ENSBGRG00000015611) #10	RNF144A (ENSBGRG00000015479) #11	ID2 (ENSBGRG00000015396) #12	ENSBGRG00000015325	KIDINS220 (ENSBGRG00000014341) #13	MBOAT2 (ENSBGRG00000014129) #14	ASAP2 (ENSBGRG00000013865) #15	ITGB1BP1 (ENSBGRG00000013746) #16	CPSF3 (ENSBGRG00000013338) #17	IAH1 (ENSBGRG00000013251) #18	ADAM17 (ENSBGRG00000012923) #19	YWHAQ (ENSBGRG00000012872) #20	ENSBGRG00000012819 ##20	ENSBGRG00000012787	TAF1B (ENSBGRG00000012581) #21	GRHL1 (ENSBGRG00000011381) #22	ENSBGRG00000011303	KLF11 (ENSBGRG00000011215) #23	CYS1 (ENSBGRG00000011167) #24	RRM2 (ENSBGRG00000010858) #25	HPCAL1 (ENSBGRG00000010770) #26	ENSBGRG00000010591 #27	ENSBGRG00000010565	NOL10 (ENSBGRG00000024949) #28	ENSBGRG00000024916	ENSBGRG00000024848 #29	ENSBGRG00000024734 #30	KCNF1 (ENSBGRG00000024709) #31	C2orf50 (ENSBGRG00000024690) #32	ENSBGRG00000024588 #33	ENSBGRG00000024544
Wild yak	MODERN SPECIES	2251															TAF1B (ENSBMUG00000018677) #21	GRHL1 (ENSBMUG00000018698) #22	KLF11 (ENSBMUG00000018725) #23	RRM2 (ENSBMUG00000018749) #25
Bos_b	ANCESTRAL SPECIES	16	ENSGT00940000161652	ENSGT00940000154030.a.b #9	ENSGT00390000013670 #10	ENSGT00940000157701 #11	ENSGT00940000156464 #12	ENSGT00940000156714 #13	ENSGT01030000234564.a.a.a.a.b #14	ENSGT00940000155623 #15	ENSGT00390000003990.k #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.b ##20	ENSGT01100000263481.n.a.a.a.a.a.a.a.a.a.a.a.b	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #24	ENSGT00390000013305.a.a #25	ENSGT00940000154645.A #26	ENSGT00950000182995.e.a.a.a.fb.a #27	ENSGT00390000007900 #28	ENSGT01100000263480.a.a.b.a.a.a.b.a.a.a.a.a.a.a.a.a	ENSGT00390000004263.b #29	ENSGT00940000155646.c #30	ENSGT00940000160213 #31	ENSGT00940000154459.B #32	ENSGT00940000153916.B #33	ENSGT00990000203553.c.b.o.b	ENSGT01030000234517.D #34	ENSGT00940000155734 #35
Cow	MODERN SPECIES	2	CMPK2 (ENSBTAG00000019979) #9	RSAD2 (ENSBTAG00000016061) #10	RNF144A (ENSBTAG00000044064) #11	ENSBTAG00000037793	ID2 (ENSBTAG00000021187) #12	KIDINS220 (ENSBTAG00000007963) #13	MBOAT2 (ENSBTAG00000008160) #14	ASAP2 (ENSBTAG00000002329) #15	ITGB1BP1 (ENSBTAG00000013063) #16	CPSF3 (ENSBTAG00000019735) #17	IAH1 (ENSBTAG00000001140) #18	ADAM17 (ENSBTAG00000001141) #19	YWHAQ (ENSBTAG00000002108) ##20	ENSBTAG00000048394	TAF1B (ENSBTAG00000007543) #21	GRHL1 (ENSBTAG00000007485) #22	KLF11 (ENSBTAG00000046218) #23	CYS1 (ENSBTAG00000052669) #24	RRM2 (ENSBTAG00000008216) #25	HPCAL1 (ENSBTAG00000004259) #26	ODC1 (ENSBTAG00000004256) #27	NOL10 (ENSBTAG00000002716) #28	ATP6V1C2 (ENSBTAG00000001927) #29	PDIA6 (ENSBTAG00000001928) #30	KCNF1 (ENSBTAG00000021283) #31	C11H2orf50 (ENSBTAG00000001903) #32	SLC66A3 (ENSBTAG00000020297) #33	ENSBTAG00000048065	ROCK2 (ENSBTAG00000005847) #34	E2F6 (ENSBTAG00000048286) #35	GREB1 (ENSBTAG00000015402) #36
Hybrid Bos Indicus	MODERN SPECIES	2	SOX11 (ENSBIXG00005020448)	CMPK2 (ENSBIXG00005003470) #9	RSAD2 (ENSBIXG00005020552) #10	RNF144A (ENSBIXG00005020588) #11	ID2 (ENSBIXG00005020723) #12	KIDINS220 (ENSBIXG00005021201) #13	MBOAT2 (ENSBIXG00005021383) #14	ASAP2 (ENSBIXG00005021521) #15	ITGB1BP1 (ENSBIXG00005021598) #16	CPSF3 (ENSBIXG00005003653) #17	IAH1 (ENSBIXG00005021763) #18	ADAM17 (ENSBIXG00005002613) #19	YWHAQ (ENSBIXG00005021830) #20	ENSBIXG00005021842	TAF1B (ENSBIXG00005021864) #21	GRHL1 (ENSBIXG00005003698) #22	KLF11 (ENSBIXG00005021989) #23	ENSBIXG00005003712 #24	RRM2 (ENSBIXG00005022029) #25	HPCAL1 (ENSBIXG00005006887) #26	ENSBIXG00005022099 #27	NOL10 (ENSBIXG00005022242) #28	ENSBIXG00005022288	ENSBIXG00005007375 #29	ENSBIXG00005007689 #30	KCNF1 (ENSBIXG00005022457) #31	C2orf50 (ENSBIXG00005022500) #32	SLC66A3 (ENSBIXG00005022531) #33	ENSBIXG00005022563	ROCK2 (ENSBIXG00005022677) #34	ENSBIXG00005022696
American bison	MODERN SPECIES	3221	ENSBBBG00000012270	RSAD2 (ENSBBBG00000012264) #10	RNF144A (ENSBBBG00000007447) #11	ID2 (ENSBBBG00000012256) #12	KIDINS220 (ENSBBBG00000012237) #13	ENSBBBG00000012162	MBOAT2 (ENSBBBG00000012157) #14	ASAP2 (ENSBBBG00000012138) #15	ENSBBBG00000012059	ITGB1BP1 (ENSBBBG00000012050) #16	CPSF3 (ENSBBBG00000012019) #17	IAH1 (ENSBBBG00000008101) #18	ADAM17 (ENSBBBG00000002244) #19	YWHAQ (ENSBBBG00000011974) #20	TAF1B (ENSBBBG00000011961) #21	GRHL1 (ENSBBBG00000011949) #22	KLF11 (ENSBBBG00000011923) #23	RRM2 (ENSBBBG00000011911) #25	HPCAL1 (ENSBBBG00000007122) #26	ODC1 (ENSBBBG00000011893) #27	NOL10 (ENSBBBG00000002209) #28	ATP6V1C2 (ENSBBBG00000011779) #29	ENSBBBG00000011729 #30	ENSBBBG00000011712	KCNF1 (ENSBBBG00000002161) #31	C2orf50 (ENSBBBG00000011703) #32	SLC66A3 (ENSBBBG00000011693) #33	ROCK2 (ENSBBBG00000011669) #34	ENSBBBG00000011612	E2F6 (ENSBBBG00000011607) #35	GREB1 (ENSBBBG00000011590) #36