Euteleostomi	ANCESTRAL SPECIES	10	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT00940000173435	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155734 #36	ENSGT01060000248676	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.a ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.B.b ##35	ENSGT00940000157219	ENSGT00950000182986.a.b.a	ENSGT00940000161165	ENSGT00390000012474
Sarcopterygii	ANCESTRAL SPECIES	10	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT00940000173435	ENSGT01030000234564.a.a.a.a.b #13	ENSGT01060000248676	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b	ENSGT00940000157219	ENSGT00950000182986.a.b.a
Tetrapoda	ANCESTRAL SPECIES	4	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT00940000173435	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b	ENSGT00940000157219
Amniota	ANCESTRAL SPECIES	1	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT00940000173435	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT01050000247847	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Mammalia	ANCESTRAL SPECIES	38	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT00940000173435	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT01050000247847	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Theria	ANCESTRAL SPECIES	35	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT00940000173435	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT01050000247847	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Eutheria	ANCESTRAL SPECIES	2	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT00940000173435	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT01050000247847	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Boreoeutheria	ANCESTRAL SPECIES	15	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT00940000173435	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Euarchontoglires	ANCESTRAL SPECIES	15	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT00940000173435	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Primates	ANCESTRAL SPECIES	14	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT00940000173435	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Haplorrhini	ANCESTRAL SPECIES	15	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Simiiformes	ANCESTRAL SPECIES	14	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00390000015789.c.b #15	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Catarrhini	ANCESTRAL SPECIES	17	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00390000015789.c.b #15	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00910000147368	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00860000136202 #24	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.w.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00390000003682.ib.b.c.a.a	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36
Hominoidea	ANCESTRAL SPECIES	18	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00390000015789.c.b #15	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00910000147368	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00860000136202 #24	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.w.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00390000003682.ib.b.c.a.a.b	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00950000183087.A.a.b.a.g.b.a.b
Hominidae	ANCESTRAL SPECIES	19	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00390000015789.c.b #15	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00910000147368	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00860000136202 #24	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.w.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00390000003682.ib.b.c.a.a.b	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00950000183087.A.a.b.a.g.b.a.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	18	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464.o #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00390000015789.c.b #15	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00910000147368	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00860000136202 #24	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.w.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00390000003682.ib.b.c.a.a.b	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36
Homo/Pan group	ANCESTRAL SPECIES	14	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464.o #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00390000015789.c.b #15	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00860000136202 #24	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.w.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37
Pan	ANCESTRAL SPECIES	17	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464.o #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00390000015789.c.b #15	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00860000136202 #24	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.w.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00950000183087.A.a.b.a.g.b.a.b	ENSGT00940000155734 #36
Chimpanzee	MODERN SPECIES	14	SOX11 (ENSPTRG00000045174) #7	CMPK2 (ENSPTRG00000011627) #8	RSAD2 (ENSPTRG00000011629) #9	RNF144A (ENSPTRG00000011630) #10	ID2 (ENSPTRG00000011632) #11	KIDINS220 (ENSPTRG00000011633) #12	MBOAT2 (ENSPTRG00000011634) #13	ASAP2 (ENSPTRG00000011636) #14	ENSPTRG00000043418 #15	ITGB1BP1 (ENSPTRG00000011637) #16	CPSF3 (ENSPTRG00000011638) #17	IAH1 (ENSPTRG00000011639) #18	ADAM17 (ENSPTRG00000011640) #19	YWHAQ (ENSPTRG00000011641) #20	TAF1B (ENSPTRG00000011642) #21	GRHL1 (ENSPTRG00000011643) #22	KLF11 (ENSPTRG00000011645) #23	ENSPTRG00000046195 #24	CYS1 (ENSPTRG00000030565) #25	RRM2 (ENSPTRG00000042985) #26	HPCAL1 (ENSPTRG00000011649) #27	ODC1 (ENSPTRG00000011650) #28	NOL10 (ENSPTRG00000011651) #29	ATP6V1C2 (ENSPTRG00000011652) #30	PDIA6 (ENSPTRG00000011653) #31	KCNF1 (ENSPTRG00000030563) #32	C2AH2orf50 (ENSPTRG00000011656) #33	SLC66A3 (ENSPTRG00000011657) #34	ROCK2 (ENSPTRG00000011658) #35	E2F6 (ENSPTRG00000011661) #36	GREB1 (ENSPTRG00000022786) #37
Bonobo	MODERN SPECIES	14	ENSPPAG00000036968	ENSPPAG00000037362	RSAD2 (ENSPPAG00000039493) #9	RNF144A (ENSPPAG00000037389) #10	ID2 (ENSPPAG00000034410) #11	KIDINS220 (ENSPPAG00000041858) #12	MBOAT2 (ENSPPAG00000043445) #13	ENSPPAG00000043888 #15	ASAP2 (ENSPPAG00000008883) #14	ITGB1BP1 (ENSPPAG00000039328) #16	CPSF3 (ENSPPAG00000042457) #17	IAH1 (ENSPPAG00000033783) #18	ADAM17 (ENSPPAG00000038185) #19	ENSPPAG00000043019 ##20	TAF1B (ENSPPAG00000031684) #21	GRHL1 (ENSPPAG00000030977) #22	KLF11 (ENSPPAG00000030099) #23	ENSPPAG00000010181 #24	RRM2 (ENSPPAG00000040070) #26	HPCAL1 (ENSPPAG00000032513) #27	ODC1 (ENSPPAG00000004476) #28	NOL10 (ENSPPAG00000010631) #29	ATP6V1C2 (ENSPPAG00000028894) #30	PDIA6 (ENSPPAG00000028754) #31	KCNF1 (ENSPPAG00000042656) #32	C2orf50 (ENSPPAG00000042216) #33	SLC66A3 (ENSPPAG00000026752) #34	ROCK2 (ENSPPAG00000038618) #35	ENSPPAG00000036122	E2F6 (ENSPPAG00000036538) #36	GREB1 (ENSPPAG00000030021) #37
Human	MODERN SPECIES	11	DCDC2C (ENSG00000214866)	SOX11 (ENSG00000176887) #7	CMPK2 (ENSG00000134326) #8	RSAD2 (ENSG00000134321) #9	RNF144A (ENSG00000151692) #10	ID2 (ENSG00000115738) #11	KIDINS220 (ENSG00000134313) #12	MBOAT2 (ENSG00000143797) #13	ASAP2 (ENSG00000151693) #14	ITGB1BP1 (ENSG00000119185) #16	CPSF3 (ENSG00000119203) #17	IAH1 (ENSG00000134330) #18	ADAM17 (ENSG00000151694) #19	YWHAQ (ENSG00000134308) #20	TAF1B (ENSG00000115750) #21	GRHL1 (ENSG00000134317) #22	KLF11 (ENSG00000172059) #23	CYS1 (ENSG00000205795) #25	RRM2 (ENSG00000171848) #26	HPCAL1 (ENSG00000115756) #27	ODC1 (ENSG00000115758) #28	NOL10 (ENSG00000115761) #29	ATP6V1C2 (ENSG00000143882) #30	PDIA6 (ENSG00000143870) #31	KCNF1 (ENSG00000162975) #32	C2orf50 (ENSG00000150873) #33	SLC66A3 (ENSG00000162976) #34	ROCK2 (ENSG00000134318) #35	E2F6 (ENSG00000169016) #36	GREB1 (ENSG00000196208) #37	NTSR2 (ENSG00000169006)
Gorilla	MODERN SPECIES	14	ENSGGOG00000036393	RSAD2 (ENSGGOG00000010720) #9	RNF144A (ENSGGOG00000039753) #10	ENSGGOG00000042490	ENSGGOG00000042851	KIDINS220 (ENSGGOG00000009822) #12	MBOAT2 (ENSGGOG00000040459) #13	ASAP2 (ENSGGOG00000001744) #14	ITGB1BP1 (ENSGGOG00000001754) #16	CPSF3 (ENSGGOG00000001757) #17	IAH1 (ENSGGOG00000001760) #18	ENSGGOG00000039328	ADAM17 (ENSGGOG00000013128) #19	ENSGGOG00000001569 #20	TAF1B (ENSGGOG00000002685) #21	GRHL1 (ENSGGOG00000002692) #22	KLF11 (ENSGGOG00000012494) #23	ENSGGOG00000027524 #24	RRM2 (ENSGGOG00000040108) #26	HPCAL1 (ENSGGOG00000007141) #27	ODC1 (ENSGGOG00000007991) #28	NOL10 (ENSGGOG00000034826) #29	ATP6V1C2 (ENSGGOG00000002273) #30	PDIA6 (ENSGGOG00000002278) #31	KCNF1 (ENSGGOG00000009528) #32	ENSGGOG00000039303	C2orf50 (ENSGGOG00000043829) #33	SLC66A3 (ENSGGOG00000001548) #34	ENSGGOG00000004964 #35	E2F6 (ENSGGOG00000028171) #36	GREB1 (ENSGGOG00000000115) #37
Orangutan	MODERN SPECIES	14	CMPK2 (ENSPPYG00000012675) #8	RSAD2 (ENSPPYG00000012674) #9	RNF144A (ENSPPYG00000012673) #10	ENSPPYG00000030180	ID2 (ENSPPYG00000012719) #11	KIDINS220 (ENSPPYG00000012670) #12	MBOAT2 (ENSPPYG00000012669) #13	ENSPPYG00000037864	ASAP2 (ENSPPYG00000012668) #14	ITGB1BP1 (ENSPPYG00000031588) #16	CPSF3 (ENSPPYG00000012666) #17	IAH1 (ENSPPYG00000012665) #18	ADAM17 (ENSPPYG00000012664) #19	YWHAQ (ENSPPYG00000012663) #20	TAF1B (ENSPPYG00000012662) #21	GRHL1 (ENSPPYG00000012661) #22	KLF11 (ENSPPYG00000012659) #23	CYS1 (ENSPPYG00000012657) #25	RRM2 (ENSPPYG00000012656) #26	HPCAL1 (ENSPPYG00000012655) #27	ODC1 (ENSPPYG00000012654) #28	NOL10 (ENSPPYG00000012653) #29	ATP6V1C2 (ENSPPYG00000012652) #30	PDIA6 (ENSPPYG00000012651) #31	KCNF1 (ENSPPYG00000041457) #32	C2orf50 (ENSPPYG00000012710) #33	SLC66A3 (ENSPPYG00000012648) #34	ROCK2 (ENSPPYG00000012647) #35	E2F6 (ENSPPYG00000036394) #36	GREB1 (ENSPPYG00000012645) #37	NTSR2 (ENSPPYG00000012644)
Gibbon	MODERN SPECIES	9	RSAD2 (ENSNLEG00000015429) #9	RNF144A (ENSNLEG00000015431) #10	ENSNLEG00000035496	ID2 (ENSNLEG00000013192) #11	KIDINS220 (ENSNLEG00000013206) #12	MBOAT2 (ENSNLEG00000013229) #13	ASAP2 (ENSNLEG00000013248) #14	ENSNLEG00000032390 #15	ITGB1BP1 (ENSNLEG00000013322) #16	CPSF3 (ENSNLEG00000013359) #17	IAH1 (ENSNLEG00000013435) #18	ADAM17 (ENSNLEG00000013455) #19	ENSNLEG00000034153	YWHAQ (ENSNLEG00000013534) #20	TAF1B (ENSNLEG00000013577) #21	GRHL1 (ENSNLEG00000013634) #22	KLF11 (ENSNLEG00000013701) #23	ENSNLEG00000031300 #24	ENSNLEG00000031728 #25	RRM2 (ENSNLEG00000035605) #26	HPCAL1 (ENSNLEG00000013802) #27	ODC1 (ENSNLEG00000013820) #28	NOL10 (ENSNLEG00000013851) #29	ATP6V1C2 (ENSNLEG00000013902) #30	PDIA6 (ENSNLEG00000013916) #31	KCNF1 (ENSNLEG00000019349) #32	C2orf50 (ENSNLEG00000014028) #33	SLC66A3 (ENSNLEG00000014031) #34	ROCK2 (ENSNLEG00000014043) #35	ENSNLEG00000018147	E2F6 (ENSNLEG00000014134) #36
Cercopithecidae	ANCESTRAL SPECIES	18	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00390000015789.c.b #15	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00910000147368	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00860000136202 #24	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.w.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a.bb.a #28	ENSGT00390000007900 #29	ENSGT00910000147526	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00390000003682.ib.b.c.a.a	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35
Rhinopithecus	ANCESTRAL SPECIES	174				ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00390000015789.c.b #15	ENSGT00940000155623 #14	ENSGT00390000003990.a #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00910000147368	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a.w.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a.bb.a #28	ENSGT00390000007900 #29	ENSGT00910000147526	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00390000003682.ib.b.c.a.a	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37
Black snub-nosed monkey	MODERN SPECIES	147				ID2 (ENSRBIG00000044689) #11	KIDINS220 (ENSRBIG00000035069) #12	MBOAT2 (ENSRBIG00000035711) #13	ASAP2 (ENSRBIG00000035134) #14	ENSRBIG00000034346 #15	ENSRBIG00000039204 #16	CPSF3 (ENSRBIG00000041615) #17	IAH1 (ENSRBIG00000029112) #18	ADAM17 (ENSRBIG00000031143) #19	ENSRBIG00000023329	YWHAQ (ENSRBIG00000023381) #20	TAF1B (ENSRBIG00000028101) #21	GRHL1 (ENSRBIG00000024539) #22	KLF11 (ENSRBIG00000037952) #23	RRM2 (ENSRBIG00000033258) #26	HPCAL1 (ENSRBIG00000034017) #27	ENSRBIG00000000544 #28	NOL10 (ENSRBIG00000043507) #29	ATP6V1C2 (ENSRBIG00000031961) #30	ENSRBIG00000035043	PDIA6 (ENSRBIG00000031454) #31	KCNF1 (ENSRBIG00000044334) #32	C2orf50 (ENSRBIG00000034453) #33	SLC66A3 (ENSRBIG00000030849) #34	ROCK2 (ENSRBIG00000044675) #35	E2F6 (ENSRBIG00000039075) #36	GREB1 (ENSRBIG00000042507) #37	NTSR2 (ENSRBIG00000029349)
Golden snub-nosed monkey	MODERN SPECIES	2175		ID2 (ENSRROG00000004887) #11	KIDINS220 (ENSRROG00000036660) #12	MBOAT2 (ENSRROG00000045314) #13	ENSRROG00000033889 #15	ENSRROG00000035274	ASAP2 (ENSRROG00000042260) #14	ENSRROG00000044107 #16	CPSF3 (ENSRROG00000033792) #17	IAH1 (ENSRROG00000034099) #18	ENSRROG00000036140	ADAM17 (ENSRROG00000038460) #19	ENSRROG00000025134	YWHAQ (ENSRROG00000044691) #20	TAF1B (ENSRROG00000024712) #21	GRHL1 (ENSRROG00000028348) #22	KLF11 (ENSRROG00000041608) #23	RRM2 (ENSRROG00000041328) #26	HPCAL1 (ENSRROG00000033182) #27	ENSRROG00000045795 #28	NOL10 (ENSRROG00000043208) #29	ENSRROG00000029320	ATP6V1C2 (ENSRROG00000039206) #30	PDIA6 (ENSRROG00000040359) #31	KCNF1 (ENSRROG00000034842) #32	ENSRROG00000039195	C2orf50 (ENSRROG00000036464) #33	SLC66A3 (ENSRROG00000037932) #34	ROCK2 (ENSRROG00000034982) #35	E2F6 (ENSRROG00000038559) #36	GREB1 (ENSRROG00000032452) #37
Cercopithecinae	ANCESTRAL SPECIES	17	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00390000015789.c.b #15	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00910000147368	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00860000136202 #24	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.w.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a.bb.a #28	ENSGT00390000007900 #29	ENSGT00910000147526	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36
Vervet Monkey	MODERN SPECIES	5	SOX11 (ENSCSAG00000000373) #7	ENSCSAG00000007025	CMPK2 (ENSCSAG00000007040) #8	RSAD2 (ENSCSAG00000007051) #9	RNF144A (ENSCSAG00000007058) #10	ID2 (ENSCSAG00000007060) #11	KIDINS220 (ENSCSAG00000007084) #12	MBOAT2 (ENSCSAG00000007093) #13	ASAP2 (ENSCSAG00000007108) #14	ITGB1BP1 (ENSCSAG00000007115) #16	CPSF3 (ENSCSAG00000007125) #17	IAH1 (ENSCSAG00000007130) #18	ADAM17 (ENSCSAG00000007138) #19	ENSCSAG00000007145 ##20	TAF1B (ENSCSAG00000007150) #21	GRHL1 (ENSCSAG00000007158) #22	KLF11 (ENSCSAG00000007163) #23	CYS1 (ENSCSAG00000007167) #25	ENSCSAG00000007172	RRM2 (ENSCSAG00000007201) #26	HPCAL1 (ENSCSAG00000007213) #27	ENSCSAG00000007220 #28	NOL10 (ENSCSAG00000007229) #29	ATP6V1C2 (ENSCSAG00000007259) #30	PDIA6 (ENSCSAG00000007282) #31	KCNF1 (ENSCSAG00000000374) #32	C2orf50 (ENSCSAG00000007293) #33	SLC66A3 (ENSCSAG00000007311) #34	ROCK2 (ENSCSAG00000007439) #35	E2F6 (ENSCSAG00000007487) #36	ENSCSAG00000007494 #37
Cercopithecinae_a	ANCESTRAL SPECIES	17	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00390000015789.c.b #15	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00910000147368	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00860000136202 #24	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.w.a #26	ENSGT00940000163505.b.b.b.b.b	ENSGT00390000013305.a.a.x ##26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a.bb.a #28	ENSGT00390000007900 #29	ENSGT00910000147526	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34
Macaca	ANCESTRAL SPECIES	17	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00390000015789.c.b #15	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00910000147368	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00860000136202 #24	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.w.a #26	ENSGT00940000163505.b.b.b.b.b	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a.bb.a #28	ENSGT00390000007900 #29	ENSGT00910000147526	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35
Pig-tailed macaque	MODERN SPECIES	127	CMPK2 (ENSMNEG00000018646) #8	RSAD2 (ENSMNEG00000040478) #9	RNF144A (ENSMNEG00000030505) #10	ID2 (ENSMNEG00000039277) #11	KIDINS220 (ENSMNEG00000044570) #12	MBOAT2 (ENSMNEG00000036853) #13	ENSMNEG00000042727 #15	ASAP2 (ENSMNEG00000020414) #14	ITGB1BP1 (ENSMNEG00000043390) #16	CPSF3 (ENSMNEG00000039447) #17	IAH1 (ENSMNEG00000038428) #18	ENSMNEG00000039629	ADAM17 (ENSMNEG00000031025) #19	YWHAQ (ENSMNEG00000035884) #20	TAF1B (ENSMNEG00000007382) #21	GRHL1 (ENSMNEG00000030598) #22	KLF11 (ENSMNEG00000034723) #23	ENSMNEG00000018854 #24	CYS1 (ENSMNEG00000030186) #25	RRM2 (ENSMNEG00000028272) #26	HPCAL1 (ENSMNEG00000033423) #27	ODC1 (ENSMNEG00000043400) #28	NOL10 (ENSMNEG00000039685) #29	ENSMNEG00000038801	ATP6V1C2 (ENSMNEG00000037515) #30	PDIA6 (ENSMNEG00000030894) #31	KCNF1 (ENSMNEG00000039841) #32	C2orf50 (ENSMNEG00000037338) #33	SLC66A3 (ENSMNEG00000044841) #34	ROCK2 (ENSMNEG00000044195) #35	E2F6 (ENSMNEG00000032994) #36
Macaca_a	ANCESTRAL SPECIES	15	ENSGT00940000154030.a.b #8	ENSGT00910000148182	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.b ##20	ENSGT01090000260040.b.b.b.b.a.a.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.w.a #26	ENSGT00940000163505.b.b.b.b.b	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a.bb.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37
Rhesus	MODERN SPECIES	4	CMPK2 (ENSMMUG00000015968) #8	ENSMMUG00000050777	RSAD2 (ENSMMUG00000015969) #9	RNF144A (ENSMMUG00000045908) #10	ID2 (ENSMMUG00000003237) #11	KIDINS220 (ENSMMUG00000021036) #12	MBOAT2 (ENSMMUG00000021037) #13	ASAP2 (ENSMMUG00000018033) #14	ITGB1BP1 (ENSMMUG00000018036)	CPSF3 (ENSMMUG00000018038) #17	IAH1 (ENSMMUG00000018045) #18	ADAM17 (ENSMMUG00000012921) #19	ENSMMUG00000062403	YWHAQ (ENSMMUG00000006965) #20	TAF1B (ENSMMUG00000001530) #21	GRHL1 (ENSMMUG00000001535) #22	KLF11 (ENSMMUG00000002054) #23	CYS1 (ENSMMUG00000030941) #25	RRM2 (ENSMMUG00000002057) #26	ENSMMUG00000053871	HPCAL1 (ENSMMUG00000020440) #27	ODC1 (ENSMMUG00000020441) #28	NOL10 (ENSMMUG00000010671) #29	ATP6V1C2 (ENSMMUG00000010320) #30	PDIA6 (ENSMMUG00000012864) #31	ENSMMUG00000059454	C13H2orf50 (ENSMMUG00000064867) #33	SLC66A3 (ENSMMUG00000022785) #34	ROCK2 (ENSMMUG00000016678) #35	E2F6 (ENSMMUG00000023225) #36	GREB1 (ENSMMUG00000020249) #37
Crab-eating macaque	MODERN SPECIES	4	ENSMFAG00000048573	ENSMFAG00000049943	RSAD2 (ENSMFAG00000055130) #9	RNF144A (ENSMFAG00000040034) #10	ENSMFAG00000057704	ID2 (ENSMFAG00000000039) #11	KIDINS220 (ENSMFAG00000031830) #12	MBOAT2 (ENSMFAG00000003741) #13	ASAP2 (ENSMFAG00000037845) #14	ITGB1BP1 (ENSMFAG00000045554) #16	CPSF3 (ENSMFAG00000001339) #17	IAH1 (ENSMFAG00000039055) #18	ADAM17 (ENSMFAG00000039177) #19	ENSMFAG00000004741 ##20	TAF1B (ENSMFAG00000041401) #21	GRHL1 (ENSMFAG00000032356) #22	KLF11 (ENSMFAG00000039490) #23	ENSMFAG00000052007 #24	RRM2 (ENSMFAG00000040783) #26	HPCAL1 (ENSMFAG00000044146) #27	ENSMFAG00000038147 #28	NOL10 (ENSMFAG00000041289) #29	ATP6V1C2 (ENSMFAG00000032936) #30	PDIA6 (ENSMFAG00000037618) #31	KCNF1 (ENSMFAG00000041973) #32	C2orf50 (ENSMFAG00000032471) #33	SLC66A3 (ENSMFAG00000034193) #34	ROCK2 (ENSMFAG00000043366) #35	E2F6 (ENSMFAG00000044687) #36	ENSMFAG00000050503 #37	ENSMFAG00000044386 #37
Cercopithecinae_b	ANCESTRAL SPECIES	15	ENSGT00910000146975	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00390000015789.c.b #15	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00860000136202 #24	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.w.a #26	ENSGT00940000163505.b.b.b.b.b	ENSGT00390000013305.a.a.x ##26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a.bb.a #28	ENSGT00390000007900 #29	ENSGT00910000147526	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34
Olive baboon	MODERN SPECIES	5	SOX11 (ENSPANG00000041661) #7	ENSPANG00000051199	CMPK2 (ENSPANG00000026237) #8	RSAD2 (ENSPANG00000026240) #9	RNF144A (ENSPANG00000023570) #10	ID2 (ENSPANG00000039736) #11	KIDINS220 (ENSPANG00000021602) #12	MBOAT2 (ENSPANG00000022343) #13	ASAP2 (ENSPANG00000023973) #14	ITGB1BP1 (ENSPANG00000016797) #16	CPSF3 (ENSPANG00000016798) #17	IAH1 (ENSPANG00000009398) #18	ADAM17 (ENSPANG00000000727) #19	YWHAQ (ENSPANG00000037411) #20	TAF1B (ENSPANG00000013803) #21	GRHL1 (ENSPANG00000020814) #22	ENSPANG00000031829 #24	CYS1 (ENSPANG00000005251) #25	RRM2 (ENSPANG00000018767) #26	ENSPANG00000044848	HPCAL1 (ENSPANG00000042769) #27	ENSPANG00000011223 #28	NOL10 (ENSPANG00000006259) #29	ATP6V1C2 (ENSPANG00000017189) #30	PDIA6 (ENSPANG00000006258) #31	KCNF1 (ENSPANG00000015920) #32	C2orf50 (ENSPANG00000005249) #33	SLC66A3 (ENSPANG00000024078) #34	ROCK2 (ENSPANG00000016385) #35	ENSPANG00000041240	E2F6 (ENSPANG00000015289) #36
Cercopithecinae_d	ANCESTRAL SPECIES	23	ENSGT00910000146975	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00390000015789.c.b #15	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00860000136202 #24	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.x ##26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a.bb.a #28	ENSGT00390000007900 #29	ENSGT00910000147526	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36
Drill	MODERN SPECIES	1452					ID2 (ENSMLEG00000040695) #11	KIDINS220 (ENSMLEG00000035601) #12	MBOAT2 (ENSMLEG00000037301) #13	ENSMLEG00000040215 #15	ASAP2 (ENSMLEG00000033183) #14	ITGB1BP1 (ENSMLEG00000031967) #16	CPSF3 (ENSMLEG00000026825) #17	IAH1 (ENSMLEG00000044290) #18	ADAM17 (ENSMLEG00000042175) #19	YWHAQ (ENSMLEG00000030005) #20	TAF1B (ENSMLEG00000043999) #21	GRHL1 (ENSMLEG00000036453) #22	KLF11 (ENSMLEG00000036570) #23	ENSMLEG00000042927 #24	ENSMLEG00000035635 ##26	HPCAL1 (ENSMLEG00000039247) #27	ODC1 (ENSMLEG00000039068) #28	NOL10 (ENSMLEG00000011854) #29	ENSMLEG00000033772	ATP6V1C2 (ENSMLEG00000028199) #30	PDIA6 (ENSMLEG00000033930) #31	C2orf50 (ENSMLEG00000038536) #33	SLC66A3 (ENSMLEG00000003286) #34	ROCK2 (ENSMLEG00000029001) #35	E2F6 (ENSMLEG00000031126) #36	GREB1 (ENSMLEG00000042035) #37	NTSR2 (ENSMLEG00000027903)
Sooty mangabey	MODERN SPECIES	121	ENSCATG00000018474	CMPK2 (ENSCATG00000040689) #8	RSAD2 (ENSCATG00000030147) #9	RNF144A (ENSCATG00000033975) #10	ID2 (ENSCATG00000030248) #11	KIDINS220 (ENSCATG00000041275) #12	MBOAT2 (ENSCATG00000040596) #13	ENSCATG00000011380 #15	ASAP2 (ENSCATG00000035990) #14	ITGB1BP1 (ENSCATG00000036040) #16	CPSF3 (ENSCATG00000014770) #17	IAH1 (ENSCATG00000029613) #18	ADAM17 (ENSCATG00000037482) #19	ENSCATG00000023335 #20	TAF1B (ENSCATG00000039789) #21	GRHL1 (ENSCATG00000027324) #22	KLF11 (ENSCATG00000037396) #23	ENSCATG00000033874 #24	CYS1 (ENSCATG00000014723) #25	ENSCATG00000031151 ##26
Platyrrhini	ANCESTRAL SPECIES	45	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00390000015789.c.b #15	ENSGT00940000155623 #14	ENSGT00390000003990.c #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.b.b ##20	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.y.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B.e #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Mas night monkey	MODERN SPECIES	1339				ID2 (ENSANAG00000035588) #11	KIDINS220 (ENSANAG00000038069) #12	MBOAT2 (ENSANAG00000037506) #13	ENSANAG00000030828 #15	ASAP2 (ENSANAG00000023907) #14	ENSANAG00000034926 #16	CPSF3 (ENSANAG00000031254) #17	IAH1 (ENSANAG00000033141) #18	ENSANAG00000022015	ADAM17 (ENSANAG00000037496) #19	YWHAQ (ENSANAG00000026145) ##20	TAF1B (ENSANAG00000031526) #21	GRHL1 (ENSANAG00000025191) #22	KLF11 (ENSANAG00000028728) #23	ENSANAG00000025761 #26	HPCAL1 (ENSANAG00000033383) #27	ODC1 (ENSANAG00000036668) #28	NOL10 (ENSANAG00000024937) #29	ENSANAG00000027269 #30	PDIA6 (ENSANAG00000012637) #31	KCNF1 (ENSANAG00000036777) #32	C2orf50 (ENSANAG00000036655) #33	ENSANAG00000021692 #34	ROCK2 (ENSANAG00000028355) #35	E2F6 (ENSANAG00000036636) #36	GREB1 (ENSANAG00000024688) #37	NTSR2 (ENSANAG00000037146)	LPIN1 (ENSANAG00000028949)
Cebidae	ANCESTRAL SPECIES	40	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00390000015789.c.b #15	ENSGT00940000155623 #14	ENSGT00390000003990.c #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.b.b ##20	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.y.a.b #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B.f #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Marmoset	MODERN SPECIES	5	CMPK2 (ENSCJAG00000085281) #8	RSAD2 (ENSCJAG00000010219) #9	RNF144A (ENSCJAG00000010225) #10	ENSCJAG00000006037 #11	KIDINS220 (ENSCJAG00000006054) #12	ENSCJAG00000053616	MBOAT2 (ENSCJAG00000006207) #13	ASAP2 (ENSCJAG00000006233) #14	ENSCJAG00000006250 #16	CPSF3 (ENSCJAG00000006276) #17	IAH1 (ENSCJAG00000006360) #18	ADAM17 (ENSCJAG00000006369) #19	ENSCJAG00000062528	YWHAQ (ENSCJAG00000040849) ##20	TAF1B (ENSCJAG00000006420) #21	GRHL1 (ENSCJAG00000006431) #22	KLF11 (ENSCJAG00000046813) #23	ENSCJAG00000006533 #26	HPCAL1 (ENSCJAG00000041528) #27	ODC1 (ENSCJAG00000006576) #28	NOL10 (ENSCJAG00000006602) #29	ATP6V1C2 (ENSCJAG00000006660) #30	PDIA6 (ENSCJAG00000006694) #31	KCNF1 (ENSCJAG00000022930) #32	C2orf50 (ENSCJAG00000079383) #33	SLC66A3 (ENSCJAG00000044173) #34	ROCK2 (ENSCJAG00000006805) #35	E2F6 (ENSCJAG00000006910) #36	GREB1 (ENSCJAG00000006946) #37	NTSR2 (ENSCJAG00000006958)	LPIN1 (ENSCJAG00000006976)
Cebidae_a	ANCESTRAL SPECIES	46	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00390000015789.c.b #15	ENSGT00940000155623 #14	ENSGT00390000003990.c #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.b.b ##20	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.y.a.b #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B.f #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Bolivian squirrel monkey	MODERN SPECIES	63	ENSSBOG00000029283	ENSSBOG00000028588 #8	RSAD2 (ENSSBOG00000024280) #9	RNF144A (ENSSBOG00000019246) #10	ID2 (ENSSBOG00000033610) #11	KIDINS220 (ENSSBOG00000026153) #12	MBOAT2 (ENSSBOG00000034820) #13	ENSSBOG00000029937 #15	ASAP2 (ENSSBOG00000021237) #14	ENSSBOG00000031545 #16	CPSF3 (ENSSBOG00000027263) #17	IAH1 (ENSSBOG00000019617) #18	ADAM17 (ENSSBOG00000035331) #19	ENSSBOG00000033831 ##20	TAF1B (ENSSBOG00000028943) #21	GRHL1 (ENSSBOG00000011486) #22	KLF11 (ENSSBOG00000018899) #23	ENSSBOG00000022360 #26	HPCAL1 (ENSSBOG00000026513) #27	ODC1 (ENSSBOG00000034688) #28	NOL10 (ENSSBOG00000025651) #29	ATP6V1C2 (ENSSBOG00000020727) #30	PDIA6 (ENSSBOG00000016573) #31	KCNF1 (ENSSBOG00000032364) #32	C2orf50 (ENSSBOG00000027050) #33	SLC66A3 (ENSSBOG00000021893) #34	ROCK2 (ENSSBOG00000026163) #35	E2F6 (ENSSBOG00000032095) #36	GREB1 (ENSSBOG00000026787) #37	NTSR2 (ENSSBOG00000024980)	LPIN1 (ENSSBOG00000030601)
Capuchin	MODERN SPECIES	1				ID2 (ENSCCAG00000034943) #11	KIDINS220 (ENSCCAG00000035619) #12	MBOAT2 (ENSCCAG00000028053) #13	ASAP2 (ENSCCAG00000033861) #14	ITGB1BP1 (ENSCCAG00000036127) #16	CPSF3 (ENSCCAG00000036730) #17	ENSCCAG00000010701	IAH1 (ENSCCAG00000034153) #18	ADAM17 (ENSCCAG00000035481) #19	ENSCCAG00000001935	YWHAQ (ENSCCAG00000031746) #20	TAF1B (ENSCCAG00000031135) #21	GRHL1 (ENSCCAG00000022259) #22	KLF11 (ENSCCAG00000026312) #23	CYS1 (ENSCCAG00000028829) #25	ENSCCAG00000009364 #26	HPCAL1 (ENSCCAG00000020323) #27	ODC1 (ENSCCAG00000021928) #28	NOL10 (ENSCCAG00000027373) #29	ATP6V1C2 (ENSCCAG00000034767) #30	PDIA6 (ENSCCAG00000028275) #31	KCNF1 (ENSCCAG00000022210) #32	C2orf50 (ENSCCAG00000027477) #33	SLC66A3 (ENSCCAG00000023484) #34	ROCK2 (ENSCCAG00000024293) #35	E2F6 (ENSCCAG00000023406) #36	GREB1 (ENSCCAG00000024488) #37	NTSR2 (ENSCCAG00000036768)
Tarsier	MODERN SPECIES	4641															TAF1B (ENSTSYG00000004194) #21	GRHL1 (ENSTSYG00000004124) #22	KLF11 (ENSTSYG00000033967) #23	ENSTSYG00000010660 #26
Strepsirrhini	ANCESTRAL SPECIES	13	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT00940000173435	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Bushbaby	MODERN SPECIES	137				ID2 (ENSOGAG00000012565) #11	KIDINS220 (ENSOGAG00000012566) #12	MBOAT2 (ENSOGAG00000034475) #13	ENSOGAG00000034565	ENSOGAG00000034773	ASAP2 (ENSOGAG00000001677) #14	ITGB1BP1 (ENSOGAG00000001679) #16	CPSF3 (ENSOGAG00000001680) #17	IAH1 (ENSOGAG00000000544) #18	ADAM17 (ENSOGAG00000000546) #19	YWHAQ (ENSOGAG00000000547) #20	TAF1B (ENSOGAG00000014337) #21	GRHL1 (ENSOGAG00000014342) #22	KLF11 (ENSOGAG00000026035) #23	ENSOGAG00000028490	RRM2 (ENSOGAG00000007075) #26	HPCAL1 (ENSOGAG00000001557) #27	ENSOGAG00000001558 #28	ENSOGAG00000033625	NOL10 (ENSOGAG00000010494) #29	ATP6V1C2 (ENSOGAG00000009748) #30	PDIA6 (ENSOGAG00000009751) #31	ENSOGAG00000033741	KCNF1 (ENSOGAG00000026918) #32	C2orf50 (ENSOGAG00000009762) #33	SLC66A3 (ENSOGAG00000009765) #34	ROCK2 (ENSOGAG00000009767) #35	ENSOGAG00000024515
Lemuriformes	ANCESTRAL SPECIES	23	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT00940000173435	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990.e.a #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Mouse lemur	MODERN SPECIES	30	CMPK2 (ENSMICG00000035731) #8	RSAD2 (ENSMICG00000000161) #9	RNF144A (ENSMICG00000006187) #10	ID2 (ENSMICG00000033026) #11	KIDINS220 (ENSMICG00000010065) #12	MBOAT2 (ENSMICG00000010098) #13	ASAP2 (ENSMICG00000002345) #14	ITGB1BP1 (ENSMICG00000002359) #16	CPSF3 (ENSMICG00000002363) #17	IAH1 (ENSMICG00000002377) #18	ADAM17 (ENSMICG00000002380) #19	YWHAQ (ENSMICG00000000973) #20	ENSMICG00000045104 #33	SLC66A3 (ENSMICG00000043387) #34	TAF1B (ENSMICG00000012714) #21	GRHL1 (ENSMICG00000012737) #22	KLF11 (ENSMICG00000012761) #23	CYS1 (ENSMICG00000027772) #25	ENSMICG00000012789 #26	HPCAL1 (ENSMICG00000029256) #27	ENSMICG00000012511 #28	NOL10 (ENSMICG00000004805) #29	ATP6V1C2 (ENSMICG00000017366) #30	ENSMICG00000017368 #31	KCNF1 (ENSMICG00000017370) #32	ROCK2 (ENSMICG00000037673) #35	ENSMICG00000028029	E2F6 (ENSMICG00000017705) #36	GREB1 (ENSMICG00000017707) #37	NTSR2 (ENSMICG00000017708)	LPIN1 (ENSMICG00000017709)
Lemuriformes_a	ANCESTRAL SPECIES	10	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT00940000173435	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990.e.a #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Coquerels sifaka	MODERN SPECIES	895															TAF1B (ENSPCOG00000019622) #21	GRHL1 (ENSPCOG00000005258) #22	KLF11 (ENSPCOG00000021417) #23	CYS1 (ENSPCOG00000020480) #25	RRM2 (ENSPCOG00000011750) #26
Greater bamboo lemur	MODERN SPECIES	430	DCDC2C (ENSPSMG00000020594)	SOX11 (ENSPSMG00000020583) #7	CMPK2 (ENSPSMG00000020579) #8	RNF144A (ENSPSMG00000020570) #10	ENSPSMG00000020553	ID2 (ENSPSMG00000020546) #11	KIDINS220 (ENSPSMG00000020495) #12	MBOAT2 (ENSPSMG00000020319) #13	ASAP2 (ENSPSMG00000020266) #14	ENSPSMG00000020223 #16	CPSF3 (ENSPSMG00000020174) #17	IAH1 (ENSPSMG00000020104) #18	ADAM17 (ENSPSMG00000020083) #19	YWHAQ (ENSPSMG00000020036) #20	TAF1B (ENSPSMG00000019984) #21	GRHL1 (ENSPSMG00000019897) #22	KLF11 (ENSPSMG00000019846) #23	CYS1 (ENSPSMG00000019836) #25	RRM2 (ENSPSMG00000019823) #26	HPCAL1 (ENSPSMG00000019803) #27	ODC1 (ENSPSMG00000019773) #28	ENSPSMG00000019736	ENSPSMG00000019726
Euarchontoglires_A	ANCESTRAL SPECIES	14	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Glires	ANCESTRAL SPECIES	13	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Rodentia	ANCESTRAL SPECIES	15	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.v #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Rodentia_B	ANCESTRAL SPECIES	14	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.v #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	339					Rsad2 (ENSDORG00000008537) #9	Rnf144a (ENSDORG00000010145) #10	Id2 (ENSDORG00000014815) #11	Kidins220 (ENSDORG00000014817) #12	Mboat2 (ENSDORG00000007348) #13	Asap2 (ENSDORG00000014261) #14	Itgb1bp1 (ENSDORG00000014262) #16	Cpsf3 (ENSDORG00000014263) #17	Adam17 (ENSDORG00000014267) #19	ENSDORG00000028741 ##20	Taf1b (ENSDORG00000010154) #21	ENSDORG00000028599 #22	ENSDORG00000024766 #22	ENSDORG00000024620 #23	Rrm2 (ENSDORG00000002514) #26	Hpcal1 (ENSDORG00000007055) #27	Odc1 (ENSDORG00000002669) #28	Nol10 (ENSDORG00000001331) #29	Atp6v1c2 (ENSDORG00000003593) #30	Pdia6 (ENSDORG00000003594) #31	Kcnf1 (ENSDORG00000026132) #32	ENSDORG00000027660 #33	Pqlc3 (ENSDORG00000025612) #34	Rock2 (ENSDORG00000008054) #35	E2f6 (ENSDORG00000013213) #36	Greb1 (ENSDORG00000009946) #37	Lpin1 (ENSDORG00000010485)
Kangaroo rat	MODERN SPECIES	339				Rsad2 (ENSDORG00000008537) #9	Rnf144a (ENSDORG00000010145) #10	Id2 (ENSDORG00000014815) #11	Kidins220 (ENSDORG00000014817) #12	Mboat2 (ENSDORG00000007348) #13	Asap2 (ENSDORG00000014261) #14	Itgb1bp1 (ENSDORG00000014262) #16	Cpsf3 (ENSDORG00000014263) #17	Adam17 (ENSDORG00000014267) #19	ENSDORG00000028741 ##20	Taf1b (ENSDORG00000010154) #21	ENSDORG00000028599 #22	ENSDORG00000024766 #22	ENSDORG00000024620 #23	Rrm2 (ENSDORG00000002514) #26	Hpcal1 (ENSDORG00000007055) #27	Odc1 (ENSDORG00000002669) #28	Nol10 (ENSDORG00000001331) #29	Atp6v1c2 (ENSDORG00000003593) #30	Pdia6 (ENSDORG00000003594) #31	Kcnf1 (ENSDORG00000026132) #32	ENSDORG00000027660 #33	Pqlc3 (ENSDORG00000025612) #34	Rock2 (ENSDORG00000008054) #35	E2f6 (ENSDORG00000013213) #36	Greb1 (ENSDORG00000009946) #37	Lpin1 (ENSDORG00000010485)	Trib2 (ENSDORG00000030161)
Myomorpha	ANCESTRAL SPECIES	24	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.v #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Muroidea	ANCESTRAL SPECIES	21	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.v #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Muroidea_A	ANCESTRAL SPECIES	24	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.v #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Cricetidae	ANCESTRAL SPECIES	24	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.v #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.v #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a.g #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Chinese hamster chok1gshd	MODERN SPECIES	229	Sox11 (ENSCGRG00001007958) #7	Cmpk2 (ENSCGRG00001018716) #8	Rsad2 (ENSCGRG00001014337) #9	Rnf144a (ENSCGRG00001007035) #10	ENSCGRG00001023880	Id2 (ENSCGRG00001023029) #11	Kidins220 (ENSCGRG00001016681) #12	Mboat2 (ENSCGRG00001015841) #13	Asap2 (ENSCGRG00001022680) #14	Itgb1bp1 (ENSCGRG00001000664) #16	Cpsf3 (ENSCGRG00001013134) #17	Iah1 (ENSCGRG00001019624) #18	Adam17 (ENSCGRG00001024922) #19	Ywhaq (ENSCGRG00001024724) #20	ENSCGRG00001018516 #21	Grhl1 (ENSCGRG00001024970) #22	Klf11 (ENSCGRG00001018478) #23	Cys1 (ENSCGRG00001013951) #25	Rrm2 (ENSCGRG00001007841) #26	Hpcal1 (ENSCGRG00001023170) #27	ENSCGRG00001015979 #28	Nol10 (ENSCGRG00001009928) #29	Atp6v1c2 (ENSCGRG00001021615) #30	Pdia6 (ENSCGRG00001017472) #31	Kcnf1 (ENSCGRG00001014274) #32	2410004P03Rik (ENSCGRG00001003389)	Pqlc3 (ENSCGRG00001018327) #34	Rock2 (ENSCGRG00001016725) #35	E2f6 (ENSCGRG00001013963) #36	Greb1 (ENSCGRG00001018970) #37	Ntsr2 (ENSCGRG00001012327)
Golden Hamster	MODERN SPECIES	737	ENSMAUG00000010849	Sox11 (ENSMAUG00000016656) #7	Cmpk2 (ENSMAUG00000017501) #8	Rsad2 (ENSMAUG00000008669) #9	Rnf144a (ENSMAUG00000014880) #10	Id2 (ENSMAUG00000012468) #11	Kidins220 (ENSMAUG00000011599) #12	Mboat2 (ENSMAUG00000005505) #13	Asap2 (ENSMAUG00000001240) #14	Itgb1bp1 (ENSMAUG00000017998) #16	Cpsf3 (ENSMAUG00000000166) #17	Iah1 (ENSMAUG00000018865) #18	Adam17 (ENSMAUG00000015291) #19	ENSMAUG00000017035 ##20	Taf1b (ENSMAUG00000013477) #21	Grhl1 (ENSMAUG00000013649) #22	ENSMAUG00000016595 #26
Cricetidae_B	ANCESTRAL SPECIES	43	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.v #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Northern American deer mouse	MODERN SPECIES	14	ENSPEMG00000022353	Sox11 (ENSPEMG00000014211) #7	Cmpk2 (ENSPEMG00000009342) #8	Rsad2 (ENSPEMG00000008928) #9	Rnf144a (ENSPEMG00000008311) #10	Id2 (ENSPEMG00000006926) #11	Kidins220 (ENSPEMG00000002148) #12	Mboat2 (ENSPEMG00000000110) #13	Asap2 (ENSPEMG00000016930) #14	Itgb1bp1 (ENSPEMG00000012447) #16	Cpsf3 (ENSPEMG00000017668) #17	Iah1 (ENSPEMG00000016641) #18	Adam17 (ENSPEMG00000015840) #19	ENSPEMG00000027877 ##20	Taf1b (ENSPEMG00000013642) #21	Grhl1 (ENSPEMG00000012157) #22	Klf11 (ENSPEMG00000011311) #23	Cys1 (ENSPEMG00000025881) #25	Rrm2 (ENSPEMG00000010359) #26	Hpcal1 (ENSPEMG00000025119) #27	Nol10 (ENSPEMG00000008676) #29	Atp6v1c2 (ENSPEMG00000007660) #30	Pdia6 (ENSPEMG00000002821) #31	Kcnf1 (ENSPEMG00000013250) #32	ENSPEMG00000025861 #33	Pqlc3 (ENSPEMG00000020282) #34	Rock2 (ENSPEMG00000020257) #35	E2f6 (ENSPEMG00000020192) #36	Greb1 (ENSPEMG00000020144) #37	Ntsr2 (ENSPEMG00000007290)	Lpin1 (ENSPEMG00000005628)
Prairie vole	MODERN SPECIES	93		Cmpk2 (ENSMOCG00000000423) #8	ENSMOCG00000020673 #9	Rnf144a (ENSMOCG00000000314) #10	ENSMOCG00000012398	Id2 (ENSMOCG00000002908) #11	Kidins220 (ENSMOCG00000011232) #12	Mboat2 (ENSMOCG00000021674) #13	Asap2 (ENSMOCG00000019749) #14	Itgb1bp1 (ENSMOCG00000017072) #16	Cpsf3 (ENSMOCG00000020067) #17	Iah1 (ENSMOCG00000017872) #18	Adam17 (ENSMOCG00000010700) #19	Ywhaq (ENSMOCG00000020316) #20	Taf1b (ENSMOCG00000005916) #21	Grhl1 (ENSMOCG00000019210) #22	ENSMOCG00000003070	ENSMOCG00000014995 #23	Cys1 (ENSMOCG00000017656) #25	ENSMOCG00000018114 #26	ENSMOCG00000010909 #26	Hpcal1 (ENSMOCG00000014411) #27	ENSMOCG00000010314 #28	Nol10 (ENSMOCG00000021564) #29	Atp6v1c2 (ENSMOCG00000019580) #30	Pdia6 (ENSMOCG00000014991) #31	Kcnf1 (ENSMOCG00000002002) #32	2410004P03Rik (ENSMOCG00000005186)	Pqlc3 (ENSMOCG00000020689) #34	Rock2 (ENSMOCG00000004291) #35	ENSMOCG00000019419 #36
Murinae	ANCESTRAL SPECIES	8	ENSGT00940000154459.B #33	ENSGT00940000160213 #32	ENSGT00940000155646 #31	ENSGT00390000004263.b #30	ENSGT00390000007900 #29	ENSGT00950000182995.e.a.a.a #28	ENSGT00940000154645.A #27	ENSGT01060000248676	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.v #26	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000156714 #12	ENSGT00940000156464 #11	ENSGT00940000157701 #10	ENSGT00390000013670 #9	ENSGT00940000154030.a.b #8	ENSGT00940000161652 #7	ENSGT00940000162396	ENSGT00390000001793	ENSGT00940000159468	ENSGT00390000014122.i.b.a.b	ENSGT00390000003466
Mus	ANCESTRAL SPECIES	10	ENSGT00940000153916.B #34	ENSGT00940000154459.B #33	ENSGT00940000160213 #32	ENSGT00940000155646 #31	ENSGT00390000004263.b #30	ENSGT00390000007900 #29	ENSGT00950000182995.e.a.a.a #28	ENSGT01060000248676	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.v #26	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000156714 #12	ENSGT00940000156464 #11	ENSGT00940000157701 #10	ENSGT00390000013670 #9	ENSGT00940000154030.a.b #8	ENSGT00940000161652 #7	ENSGT00940000162396	ENSGT00390000001793	ENSGT00940000159468	ENSGT00390000014122.i.b.a.b	ENSGT00390000003466
Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000153916.B.c #34	ENSGT00940000154459.B #33	ENSGT00940000160213 #32	ENSGT00940000155646 #31	ENSGT00390000004263.b #30	ENSGT00390000007900 #29	ENSGT00950000182995.e.a.a.a.e #28	ENSGT01060000248676	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.v #26	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000156714 #12	ENSGT00940000156464 #11	ENSGT00940000157701 #10	ENSGT00390000013670 #9	ENSGT00940000154030.a.b #8	ENSGT00940000161652 #7	ENSGT00940000162396	ENSGT00390000001793	ENSGT00940000159468	ENSGT00390000014122.i.b.a.b	ENSGT00390000003466
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000154459.B #33	ENSGT00940000160213 #32	ENSGT00940000155646 #31	ENSGT00390000004263.b #30	ENSGT00390000007900 #29	ENSGT00950000182995.e.a.a.a.e #28	ENSGT00940000154645.A #27	ENSGT01060000248676	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.v #26	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000156714 #12	ENSGT00940000156464 #11	ENSGT00940000157701 #10	ENSGT00390000013670 #9	ENSGT00940000154030.a.b #8	ENSGT00940000161652 #7	ENSGT00940000162396	ENSGT00390000001793	ENSGT00940000159468	ENSGT00390000014122.i.b.a.b	ENSGT00390000003466
Mouse	MODERN SPECIES	3	Pdia6 (ENSMUSG00000020571) #31	Atp6v1c2 (ENSMUSG00000020566) #30	Nol10 (ENSMUSG00000061458) #29	Odc1 (ENSMUSG00000011179) #28	Hpcal1 (ENSMUSG00000071379) #27	5730507C01Rik (ENSMUSG00000073197)	Gm21863 (ENSMUSG00000095470)	Asap2 (ENSMUSG00000052632) #14	Itgb1bp1 (ENSMUSG00000062352) #16	Cpsf3 (ENSMUSG00000054309) #17	Iah1 (ENSMUSG00000062054) #18	Adam17 (ENSMUSG00000052593) #19	Ywhaq (ENSMUSG00000076432) #20	9030624G23Rik (ENSMUSG00000073158)	Taf1b (ENSMUSG00000059669) #21	Grhl1 (ENSMUSG00000020656) #22	Klf11 (ENSMUSG00000020653) #23	Cys1 (ENSMUSG00000062563) #25	Rrm2 (ENSMUSG00000020649) #26	Mboat2 (ENSMUSG00000020646) #13	Kidins220 (ENSMUSG00000036333) #12	Id2 (ENSMUSG00000020644) #11	Rnf144a (ENSMUSG00000020642) #10	Rsad2 (ENSMUSG00000020641) #9	Cmpk2 (ENSMUSG00000020638) #8	Sox11 (ENSMUSG00000063632) #7	Dcdc2c (ENSMUSG00000020633)	Allc (ENSMUSG00000020636)	Colec11 (ENSMUSG00000036655)	Rps7 (ENSMUSG00000061477)	Rnaseh1 (ENSMUSG00000020630)
Mus_C	ANCESTRAL SPECIES	11	ENSGT00940000153916.B.c #34	ENSGT00940000154459.B #33	ENSGT00940000160213 #32	ENSGT00940000155646 #31	ENSGT00390000004263.b #30	ENSGT00390000007900 #29	ENSGT00950000182995.e.a.a.a.e #28	ENSGT00940000154645.A #27	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.v #26	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000156714 #12	ENSGT00940000156464 #11	ENSGT00940000157701 #10	ENSGT00390000013670 #9	ENSGT00940000154030.a.b #8	ENSGT00940000161652 #7	ENSGT00940000162396	ENSGT00390000001793	ENSGT00940000159468	ENSGT00390000014122.i.b.a.b	ENSGT00390000003466
spretus	MODERN SPECIES	3	Rock2 (MGP_SPRETEiJ_G0018472) #35	MGP_SPRETEiJ_G0018473 #34	2410004P03Rik (MGP_SPRETEiJ_G0018474)	Kcnf1 (MGP_SPRETEiJ_G0018475) #32	Pdia6 (MGP_SPRETEiJ_G0018476) #31	Atp6v1c2 (MGP_SPRETEiJ_G0018477) #30	Nol10 (MGP_SPRETEiJ_G0018478) #29	Asap2 (MGP_SPRETEiJ_G0018479) #14	Itgb1bp1 (MGP_SPRETEiJ_G0018480) #16	Cpsf3 (MGP_SPRETEiJ_G0018481) #17	Iah1 (MGP_SPRETEiJ_G0018482) #18	Adam17 (MGP_SPRETEiJ_G0018483) #19	Ywhaq (MGP_SPRETEiJ_G0018484) #20	Taf1b (MGP_SPRETEiJ_G0018485) #21	MGP_SPRETEiJ_G0018486	Grhl1 (MGP_SPRETEiJ_G0018487) #22	Klf11 (MGP_SPRETEiJ_G0018488) #23	Cys1 (MGP_SPRETEiJ_G0018489) #25	Rrm2 (MGP_SPRETEiJ_G0018490) #26	Mboat2 (MGP_SPRETEiJ_G0018491) #13	Kidins220 (MGP_SPRETEiJ_G0018492) #12	MGP_SPRETEiJ_G0018493 #11	Rnf144a (MGP_SPRETEiJ_G0018494) #10	Rsad2 (MGP_SPRETEiJ_G0018495) #9	Cmpk2 (MGP_SPRETEiJ_G0018496) #8	Sox11 (MGP_SPRETEiJ_G0018497) #7	MGP_SPRETEiJ_G0018498	Allc (MGP_SPRETEiJ_G0018499)	Colec11 (MGP_SPRETEiJ_G0018500)	MGP_SPRETEiJ_G0018501	Rnaseh1 (MGP_SPRETEiJ_G0018502)
Steppe mouse	MODERN SPECIES	56															Taf1b (ENSMSIG00000026008) #21	Grhl1 (ENSMSIG00000025943) #22	Klf11 (ENSMSIG00000025936) #23	ENSMSIG00000025932	Rrm2 (ENSMSIG00000025915) #26	Mboat2 (ENSMSIG00000025871) #13	Kidins220 (ENSMSIG00000025770) #12	ENSMSIG00000025759 #11	ENSMSIG00000025755	ENSMSIG00000025745	Rnf144a (ENSMSIG00000025691) #10	Rsad2 (ENSMSIG00000025674) #9	ENSMSIG00000025668	ENSMSIG00000025619
Ryukyu mouse	MODERN SPECIES	3	Rock2 (MGP_CAROLIEiJ_G0017630) #35	MGP_CAROLIEiJ_G0017631 #34	MGP_CAROLIEiJ_G0017632 #33	Kcnf1 (MGP_CAROLIEiJ_G0017633) #32	Pdia6 (MGP_CAROLIEiJ_G0017634) #31	Atp6v1c2 (MGP_CAROLIEiJ_G0017635) #30	Nol10 (MGP_CAROLIEiJ_G0017636) #29	Odc1 (MGP_CAROLIEiJ_G0017637) #28	Asap2 (MGP_CAROLIEiJ_G0017638) #14	Itgb1bp1 (MGP_CAROLIEiJ_G0017639) #16	Cpsf3 (MGP_CAROLIEiJ_G0017640) #17	Iah1 (MGP_CAROLIEiJ_G0017641) #18	Adam17 (MGP_CAROLIEiJ_G0017642) #19	Ywhaq (MGP_CAROLIEiJ_G0017643) #20	Taf1b (MGP_CAROLIEiJ_G0017644) #21	Grhl1 (MGP_CAROLIEiJ_G0017645) #22	Klf11 (MGP_CAROLIEiJ_G0017646) #23	Cys1 (MGP_CAROLIEiJ_G0017647) #25	Rrm2 (MGP_CAROLIEiJ_G0017648) #26	Mboat2 (MGP_CAROLIEiJ_G0017649) #13	Kidins220 (MGP_CAROLIEiJ_G0017650) #12	MGP_CAROLIEiJ_G0017651 #11	Rnf144a (MGP_CAROLIEiJ_G0017652) #10	Rsad2 (MGP_CAROLIEiJ_G0017653) #9	Cmpk2 (MGP_CAROLIEiJ_G0017654) #8	Sox11 (MGP_CAROLIEiJ_G0017655) #7	MGP_CAROLIEiJ_G0017656	Allc (MGP_CAROLIEiJ_G0017657)	Colec11 (MGP_CAROLIEiJ_G0017658)	Rps7 (MGP_CAROLIEiJ_G0017659)	Rnaseh1 (MGP_CAROLIEiJ_G0017660)
Shrew mouse	MODERN SPECIES	20	Rock2 (MGP_PahariEiJ_G0029387) #35	Pqlc3 (MGP_PahariEiJ_G0029388) #34	MGP_PahariEiJ_G0029389 #33	Kcnf1 (MGP_PahariEiJ_G0029390) #32	Pdia6 (MGP_PahariEiJ_G0029391) #31	Atp6v1c2 (MGP_PahariEiJ_G0029392) #30	Nol10 (MGP_PahariEiJ_G0029393) #29	Odc1 (MGP_PahariEiJ_G0029394) #28	Asap2 (MGP_PahariEiJ_G0029395) #14	Itgb1bp1 (MGP_PahariEiJ_G0029396) #16	Cpsf3 (MGP_PahariEiJ_G0029397) #17	Iah1 (MGP_PahariEiJ_G0029398) #18	Adam17 (MGP_PahariEiJ_G0029399) #19	MGP_PahariEiJ_G0029400 #20	MGP_PahariEiJ_G0029401 #21	MGP_PahariEiJ_G0029402 #22	Klf11 (MGP_PahariEiJ_G0029403) #23	Cys1 (MGP_PahariEiJ_G0029404) #25	MGP_PahariEiJ_G0029405 #26	Mboat2 (MGP_PahariEiJ_G0029407) #13	Kidins220 (MGP_PahariEiJ_G0029408) #12	MGP_PahariEiJ_G0029409 #11	Rnf144a (MGP_PahariEiJ_G0029410) #10	Rsad2 (MGP_PahariEiJ_G0029411) #9	Cmpk2 (MGP_PahariEiJ_G0029412) #8	Sox11 (MGP_PahariEiJ_G0029413) #7	MGP_PahariEiJ_G0029414	Allc (MGP_PahariEiJ_G0029415)	Colec11 (MGP_PahariEiJ_G0029416)	MGP_PahariEiJ_G0029417	Rnaseh1 (MGP_PahariEiJ_G0029418)
Rat	MODERN SPECIES	16	Pdia6 (ENSRNOG00000050197) #31	Atp6v1c2 (ENSRNOG00000050553) #30	Nol10 (ENSRNOG00000005344) #29	AABR07063703.1 (ENSRNOG00000046279)	Odc1 (ENSRNOG00000005424) #28	LOC120093238 (ENSRNOG00000032523)	Hpcal1 (ENSRNOG00000005492) #27	Asap2 (ENSRNOG00000061519) #14	Itgb1bp1 (ENSRNOG00000059402) #16	Cpsf3 (ENSRNOG00000052418) #17	Iah1 (ENSRNOG00000060853) #18	Adam17 (ENSRNOG00000060694) #19	Ywhaq (ENSRNOG00000051650) #20	Taf1b (ENSRNOG00000061415) #21	Rbm34-ps1 (ENSRNOG00000065550)	Grhl1 (ENSRNOG00000054989) #22	Klf11 (ENSRNOG00000054259) #23	Cys1 (ENSRNOG00000058891) #25	Rrm2 (ENSRNOG00000054286) #26	Mboat2 (ENSRNOG00000061050) #13	Kidins220 (ENSRNOG00000023176) #12	LOC120093241 (ENSRNOG00000062523)	Id2 (ENSRNOG00000007237) #11	Rnf144a (ENSRNOG00000007370) #10	Rsad2 (ENSRNOG00000007539) #9	Cmpk2 (ENSRNOG00000007690) #8	Sox11 (ENSRNOG00000030034) #7	ENSRNOG00000068283	ENSRNOG00000069562	Dcdc2c (ENSRNOG00000067604)	ENSRNOG00000070424
Upper Galilee mountains blind mole rat	MODERN SPECIES	1517	Sox11 (ENSNGAG00000016772) #7	Cmpk2 (ENSNGAG00000020998) #8	Rsad2 (ENSNGAG00000020530) #9	Rnf144a (ENSNGAG00000018727) #10	Id2 (ENSNGAG00000018053) #11	Kidins220 (ENSNGAG00000012753) #12	Mboat2 (ENSNGAG00000004975) #13	Asap2 (ENSNGAG00000020450) #14	Itgb1bp1 (ENSNGAG00000015478) #16	Cpsf3 (ENSNGAG00000019836) #17	Iah1 (ENSNGAG00000017153) #18	Adam17 (ENSNGAG00000016571) #19	Ywhaq (ENSNGAG00000012388) #20	ENSNGAG00000015636	Taf1b (ENSNGAG00000010048) #21	Grhl1 (ENSNGAG00000004562) #22	Klf11 (ENSNGAG00000018758) #23	Cys1 (ENSNGAG00000015080) #25	Rrm2 (ENSNGAG00000013008) #26	Hpcal1 (ENSNGAG00000012465) #27	ENSNGAG00000001599 #28	ENSNGAG00000019061	Nol10 (ENSNGAG00000015506) #29	Atp6v1c2 (ENSNGAG00000000867) #30	Pdia6 (ENSNGAG00000014585) #31	Kcnf1 (ENSNGAG00000017575) #32	ENSNGAG00000011266 #33	Pqlc3 (ENSNGAG00000009941) #34	Rock2 (ENSNGAG00000019681) #35	E2f6 (ENSNGAG00000012686) #36	Greb1 (ENSNGAG00000019611) #37
Lesser Egyptian jerboa	MODERN SPECIES	123	E2f6 (ENSJJAG00000023699) #36	Rock2 (ENSJJAG00000000496) #35	ENSJJAG00000000353	Pqlc3 (ENSJJAG00000001428) #34	ENSJJAG00000003503 #33	Kcnf1 (ENSJJAG00000012515) #32	Pdia6 (ENSJJAG00000011060) #31	Atp6v1c2 (ENSJJAG00000011787) #30	Nol10 (ENSJJAG00000013166) #29	ENSJJAG00000013286 #28	Hpcal1 (ENSJJAG00000013350) #27	ENSJJAG00000013475 #26	ENSJJAG00000012792	B3gnt5 (ENSJJAG00000012804)	Taf1b (ENSJJAG00000015578) #21	Grhl1 (ENSJJAG00000018256) #22	ENSJJAG00000012892	Klf11 (ENSJJAG00000012906) #23	Atp13a3 (ENSJJAG00000014687)	Gp5 (ENSJJAG00000017681)	Lrrc15 (ENSJJAG00000017868)	Hes1 (ENSJJAG00000018186)	Slc13a5 (ENSJJAG00000018624)	Med31 (ENSJJAG00000019488)	Txndc17 (ENSJJAG00000019649)	ENSJJAG00000020287	Pitpnm3 (ENSJJAG00000020872)	Pimreg (ENSJJAG00000021925)	Aipl1 (ENSJJAG00000022099)	Wscd1 (ENSJJAG00000022353)
Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.v #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734.q #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Hystricomorpha	ANCESTRAL SPECIES	64								ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT01090000260040.b.b.b.b.b ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a.u.a #26	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.v #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734.q #36	ENSGT00390000008041.C #37
Naked mole-rat female	MODERN SPECIES	19															ENSHGLG00000001858 #21	GRHL1 (ENSHGLG00000004863) #22	KLF11 (ENSHGLG00000033218) #23	ENSHGLG00000002385 #25	RRM2 (ENSHGLG00000000884) #26	HPCAL1 (ENSHGLG00000000540) #27	ENSHGLG00000000300 #28	NOL10 (ENSHGLG00000001564) #29	ATP6V1C2 (ENSHGLG00000001064) #30	PDIA6 (ENSHGLG00000000403) #31	ENSHGLG00000047929	ENSHGLG00000050301	KCNF1 (ENSHGLG00000003808) #32	ENSHGLG00000000514 #35	ENSHGLG00000001946 #33	SLC66A3 (ENSHGLG00000001582) #34	ENSHGLG00000046079
Hystricomorpha_a	ANCESTRAL SPECIES	70	ENSGT00390000014122.i.b.a.b	ENSGT00390000003466	ENSGT00390000008195	ENSGT00390000002448	ENSGT00730000111137	ENSGT00940000155671	ENSGT00940000157666	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT01090000260040.b.b.b.b.b ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a.v #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734.q #36	ENSGT00390000008041.C #37	ENSGT00940000157219	ENSGT00950000182986.a.b.a
Guinea pig	MODERN SPECIES	125																GRHL1 (ENSCPOG00000010783) #22	KLF11 (ENSCPOG00000025767) #23	RRM2 (ENSCPOG00000008652) #26	HPCAL1 (ENSCPOG00000034185) #27	ODC1 (ENSCPOG00000008476) #28	NOL10 (ENSCPOG00000007706) #29	ATP6V1C2 (ENSCPOG00000008738) #30	PDIA6 (ENSCPOG00000010804) #31	KCNF1 (ENSCPOG00000015432) #32	C2orf50 (ENSCPOG00000034329) #33	SLC66A3 (ENSCPOG00000031555) #34	ROCK2 (ENSCPOG00000012664) #35	E2F6 (ENSCPOG00000019385) #36	GREB1 (ENSCPOG00000006588) #37	LPIN1 (ENSCPOG00000013546)	TRIB2 (ENSCPOG00000040411)
Hystricomorpha_b	ANCESTRAL SPECIES	91	ENSGT00390000014122.i.b.a.b	ENSGT00390000003466	ENSGT00390000008195	ENSGT00390000002448	ENSGT00730000111137	ENSGT00940000155671	ENSGT00940000157666	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT01090000260040.b.b.b.b.b ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a.v #26	ENSGT00390000013305.a.a.u.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000170593	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734.q #36	ENSGT00390000008041.C #37	ENSGT00940000157219
Long-tailed chinchilla	MODERN SPECIES	194	RPS7 (ENSCLAG00000002424)	RNASEH1 (ENSCLAG00000002440)	ADI1 (ENSCLAG00000002464)	TRAPPC12 (ENSCLAG00000002486)	EIPR1 (ENSCLAG00000002535)	ENSCLAG00000001592	MYT1L (ENSCLAG00000001644)	PXDN (ENSCLAG00000001727)	ASAP2 (ENSCLAG00000001989) #14	ITGB1BP1 (ENSCLAG00000002388) #16	CPSF3 (ENSCLAG00000002727) #17	IAH1 (ENSCLAG00000002879) #18	ADAM17 (ENSCLAG00000003055) #19	YWHAQ (ENSCLAG00000003576) ##20	TAF1B (ENSCLAG00000003776) #21	GRHL1 (ENSCLAG00000004000) #22	ENSCLAG00000004146 #23	RRM2 (ENSCLAG00000001926) #26	ENSCLAG00000002025	HPCAL1 (ENSCLAG00000002037) #27	ODC1 (ENSCLAG00000002140) #28	NOL10 (ENSCLAG00000002234) #29	ATP6V1C2 (ENSCLAG00000006612) #30	PDIA6 (ENSCLAG00000006956) #31	KCNF1 (ENSCLAG00000017968) #32	ENSCLAG00000007661	SLC66A3 (ENSCLAG00000008584) #34	ROCK2 (ENSCLAG00000009471) #35	E2F6 (ENSCLAG00000004863) #36	GREB1 (ENSCLAG00000005662) #37	LPIN1 (ENSCLAG00000001810)
Degu	MODERN SPECIES	192				MYT1L (ENSODEG00000001544)	ENSODEG00000018668	PXDN (ENSODEG00000001228)	ASAP2 (ENSODEG00000001497) #14	ENSODEG00000018909	ENSODEG00000003101 #16	CPSF3 (ENSODEG00000003129) #17	IAH1 (ENSODEG00000003362) #18	ADAM17 (ENSODEG00000003472) #19	YWHAQ (ENSODEG00000001504) #20	ENSODEG00000001535	TAF1B (ENSODEG00000002052) #21	GRHL1 (ENSODEG00000002151) #22	ENSODEG00000002288 #23	RRM2 (ENSODEG00000002317) #26	ENSODEG00000002415 #27	ODC1 (ENSODEG00000000437) #28	NOL10 (ENSODEG00000000508) #29	ATP6V1C2 (ENSODEG00000000754) #30	ENSODEG00000000842 #31	ENSODEG00000000975	ENSODEG00000000987 #34	ENSODEG00000001162 #35	ENSODEG00000001198 #35	ENSODEG00000001238 #36	GREB1 (ENSODEG00000002144) #37	LPIN1 (ENSODEG00000003117)	TRIB2 (ENSODEG00000003153)
Sciuridae	ANCESTRAL SPECIES	16	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982.b #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.v.b #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734.q #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	5	SOX11 (ENSSVLG00005021089) #7	CMPK2 (ENSSVLG00005020981) #8	RSAD2 (ENSSVLG00005020911) #9	RNF144A (ENSSVLG00005020868) #10	ID2 (ENSSVLG00005020830) #11	KIDINS220 (ENSSVLG00005020790) #12	MBOAT2 (ENSSVLG00005020748) #13	ASAP2 (ENSSVLG00005020310) #14	ITGB1BP1 (ENSSVLG00005020179) #16	CPSF3 (ENSSVLG00005020098) #17	IAH1 (ENSSVLG00005019997) #18	ADAM17 (ENSSVLG00005019936) #19	YWHAQ (ENSSVLG00005019899) #20	ENSSVLG00005019881	ENSSVLG00005019695 #21	ENSSVLG00005019438 #22	KLF11 (ENSSVLG00005019337) #23	CYS1 (ENSSVLG00005019295) #25	ENSSVLG00005019233 #26	HPCAL1 (ENSSVLG00005019176) #27	ENSSVLG00005019056 #28	NOL10 (ENSSVLG00005018977) #29	ENSSVLG00005018931	ATP6V1C2 (ENSSVLG00005018543) #30	PDIA6 (ENSSVLG00005018305) #31	KCNF1 (ENSSVLG00005018274) #32	C2orf50 (ENSSVLG00005018240) #33	SLC66A3 (ENSSVLG00005018165) #34	ROCK2 (ENSSVLG00005018051) #35	ENSSVLG00005017989	ENSSVLG00005017788 #36
Eurasian red squirrel	MODERN SPECIES	42					ENSSVLG00005018207	ENSSVLG00005018167	ENSSVLG00005018123	ENSSVLG00005018056	ENSSVLG00005018030	ENSSVLG00005017990	ENSSVLG00005017973	ENSSVLG00005017934	ENSSVLG00005017901	ENSSVLG00005017853	ENSSVLG00005017798	ENSSVLG00005017762 #22
Marmotini	ANCESTRAL SPECIES	14	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069.k.a #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982.b #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a.v.b #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734.q #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Marmotini_b	ANCESTRAL SPECIES	17	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069.k.a #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.b ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982.b #23	ENSGT00390000013305.a.a.v.b #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734.q #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b	ENSGT00940000157219
Squirrel	MODERN SPECIES	132	ALLC (ENSSTOG00000002136)	DCDC2C (ENSSTOG00000020234)	CMPK2 (ENSSTOG00000019402) #8	RSAD2 (ENSSTOG00000006147) #9	RNF144A (ENSSTOG00000027570) #10	ID2 (ENSSTOG00000019401) #11	KIDINS220 (ENSSTOG00000013232) #12	MBOAT2 (ENSSTOG00000020147) #13	ASAP2 (ENSSTOG00000004398) #14	ITGB1BP1 (ENSSTOG00000004464) #16	CPSF3 (ENSSTOG00000004476) #17	ENSSTOG00000004500 #18	ADAM17 (ENSSTOG00000004510) #19	ENSSTOG00000024378 ##20	TAF1B (ENSSTOG00000002419) #21	GRHL1 (ENSSTOG00000019842) #22	ENSSTOG00000030936 #23	ENSSTOG00000033669 #26	HPCAL1 (ENSSTOG00000001514) #27	ENSSTOG00000000386 #28	NOL10 (ENSSTOG00000005485) #29	ATP6V1C2 (ENSSTOG00000005527) #30	PDIA6 (ENSSTOG00000005550) #31	C2orf50 (ENSSTOG00000002600) #33	SLC66A3 (ENSSTOG00000027023) #34	ROCK2 (ENSSTOG00000002624) #35	E2F6 (ENSSTOG00000003316) #36	GREB1 (ENSSTOG00000026032) #37	NTSR2 (ENSSTOG00000010000)	LPIN1 (ENSSTOG00000010854)	ENSSTOG00000002702
Arctic ground squirrel	MODERN SPECIES			SOX11 (ENSUPAG00010012315) #7	CMPK2 (ENSUPAG00010012310) #8	RSAD2 (ENSUPAG00010012305) #9	RNF144A (ENSUPAG00010012263) #10	ID2 (ENSUPAG00010012253) #11	KIDINS220 (ENSUPAG00010012028) #12	MBOAT2 (ENSUPAG00010011957) #13	ASAP2 (ENSUPAG00010011650) #14	ITGB1BP1 (ENSUPAG00010011629) #16	CPSF3 (ENSUPAG00010011610) #17	ENSUPAG00010011577 #18	ADAM17 (ENSUPAG00010011539) #19	YWHAQ (ENSUPAG00010011534) ##20	TAF1B (ENSUPAG00010011508) #21	GRHL1 (ENSUPAG00010011483) #22	KLF11 (ENSUPAG00010011457) #23	CYS1 (ENSUPAG00010011444) #25	HPCAL1 (ENSUPAG00010011428) #27	ODC1 (ENSUPAG00010011416) #28	NOL10 (ENSUPAG00010011386) #29	ATP6V1C2 (ENSUPAG00010011265) #30	PDIA6 (ENSUPAG00010011237) #31	KCNF1 (ENSUPAG00010011227) #32	C2orf50 (ENSUPAG00010011218) #33	SLC66A3 (ENSUPAG00010011204) #34	ROCK2 (ENSUPAG00010011170) #35	ENSUPAG00010011160	E2F6 (ENSUPAG00010011151) #36	GREB1 (ENSUPAG00010011107) #37	NTSR2 (ENSUPAG00010011106)
Alpin marmot	MODERN SPECIES	6	ENSMMMG00000022822	SOX11 (ENSMMMG00000022819) #7	CMPK2 (ENSMMMG00000022812) #8	RSAD2 (ENSMMMG00000022810) #9	RNF144A (ENSMMMG00000022809) #10	ID2 (ENSMMMG00000022803) #11	KIDINS220 (ENSMMMG00000022748) #12	MBOAT2 (ENSMMMG00000022735) #13	ASAP2 (ENSMMMG00000022671) #14	ITGB1BP1 (ENSMMMG00000022669) #16	CPSF3 (ENSMMMG00000022663) #17	IAH1 (ENSMMMG00000022658) #18	ADAM17 (ENSMMMG00000022654) #19	YWHAQ (ENSMMMG00000022652) #20	TAF1B (ENSMMMG00000022638) #21	GRHL1 (ENSMMMG00000022631) #22	KLF11 (ENSMMMG00000022629) #23	ENSMMMG00000022625 #25	ENSMMMG00000022624 #26	HPCAL1 (ENSMMMG00000022618) #27	ODC1 (ENSMMMG00000022615) #28	NOL10 (ENSMMMG00000022607) #29	ATP6V1C2 (ENSMMMG00000022583) #30	PDIA6 (ENSMMMG00000022575) #31	KCNF1 (ENSMMMG00000022573) #32	C2orf50 (ENSMMMG00000022565) #33	SLC66A3 (ENSMMMG00000022562) #34	ROCK2 (ENSMMMG00000022550) #35	E2F6 (ENSMMMG00000022544) #36	GREB1 (ENSMMMG00000022514) #37	LPIN1 (ENSMMMG00000022468)
Lagomorpha	ANCESTRAL SPECIES	233						ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT01090000260040.b.b.b.b.a.b ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23
Rabbit	MODERN SPECIES	536						KIDINS220 (ENSOCUG00000003996) #12	MBOAT2 (ENSOCUG00000016985) #13	ASAP2 (ENSOCUG00000003719) #14	ENSOCUG00000003726 #16	IAH1 (ENSOCUG00000026669) #18	ADAM17 (ENSOCUG00000010474) #19	YWHAQ (ENSOCUG00000010482) #20	CPSF3 (ENSOCUG00000003728) #17	ENSOCUG00000028159	TAF1B (ENSOCUG00000005643) #21	GRHL1 (ENSOCUG00000017717) #22	KLF11 (ENSOCUG00000003809) #23
Pika	MODERN SPECIES	2207									ENSOPRG00000008852 #14	ITGB1BP1 (ENSOPRG00000008887) #16	CPSF3 (ENSOPRG00000008902) #17	IAH1 (ENSOPRG00000008947) #18	ADAM17 (ENSOPRG00000008960) #19	ENSOPRG00000008991 ##20	TAF1B (ENSOPRG00000008998) #21	ENSOPRG00000009027 #22
Tree shrew	MODERN SPECIES	2529										ENSTBEG00000008035 #14	ITGB1BP1 (ENSTBEG00000001622) #16	CPSF3 (ENSTBEG00000002707) #17	ADAM17 (ENSTBEG00000004343) #19	ENSTBEG00000006122 ##20	TAF1B (ENSTBEG00000006430) #21	GRHL1 (ENSTBEG00000007777) #22	KLF11 (ENSTBEG00000008268) #23
Laurasiatheria	ANCESTRAL SPECIES	13	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Eulipotyphla	ANCESTRAL SPECIES	1709															ENSGT00440000033827 #21	ENSGT00940000157612 #22
Common shrew	MODERN SPECIES	1211															TAF1B (ENSSARG00000012412) #21	GRHL1 (ENSSARG00000012428) #22
Hedgehog	MODERN SPECIES	3096																ENSEEUG00000009855 #22
Laurasiatheria_a	ANCESTRAL SPECIES	17	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Laurasiatheria_b	ANCESTRAL SPECIES	17	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Laurasiatheria_c	ANCESTRAL SPECIES	14	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Chiroptera	ANCESTRAL SPECIES	10	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000157219
Microchiroptera	ANCESTRAL SPECIES	14	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000157219
Greater horseshoe bat	MODERN SPECIES	4	RSAD2 (ENSRFEG00010010140) #9	RNF144A (ENSRFEG00010010097) #10	ENSRFEG00010010062 #11	KIDINS220 (ENSRFEG00010009917) #12	MBOAT2 (ENSRFEG00010009854) #13	ENSRFEG00010009833	ENSRFEG00010009824	ASAP2 (ENSRFEG00010009716) #14	ITGB1BP1 (ENSRFEG00010009640) #16	CPSF3 (ENSRFEG00010009573) #17	IAH1 (ENSRFEG00010009506) #18	ADAM17 (ENSRFEG00010009462) #19	YWHAQ (ENSRFEG00010009419) #20	TAF1B (ENSRFEG00010009242) #21	ENSRFEG00010009191	GRHL1 (ENSRFEG00010008922) #22	KLF11 (ENSRFEG00010008867) #23	CYS1 (ENSRFEG00010008838) #25	ENSRFEG00010008723 #26	HPCAL1 (ENSRFEG00010008686) #27	ODC1 (ENSRFEG00010008653) #28	NOL10 (ENSRFEG00010008527) #29	ATP6V1C2 (ENSRFEG00010008402) #30	PDIA6 (ENSRFEG00010008218) #31	KCNF1 (ENSRFEG00010008182) #32	C2orf50 (ENSRFEG00010008148) #33	SLC66A3 (ENSRFEG00010008070) #34	ROCK2 (ENSRFEG00010007837) #35	E2F6 (ENSRFEG00010007627) #36	GREB1 (ENSRFEG00010007141) #37	LPIN1 (ENSRFEG00010006930)
Microbat	MODERN SPECIES	1345										ITGB1BP1 (ENSMLUG00000010629) #16	CPSF3 (ENSMLUG00000010636) #17	IAH1 (ENSMLUG00000010667) #18	ADAM17 (ENSMLUG00000010676) #19	YWHAQ (ENSMLUG00000005383) #20	TAF1B (ENSMLUG00000002273) #21	GRHL1 (ENSMLUG00000002290) #22	KLF11 (ENSMLUG00000002295) #23	RRM2 (ENSMLUG00000010596) #26	ENSMLUG00000010423 #28	NOL10 (ENSMLUG00000012309) #29	ATP6V1C2 (ENSMLUG00000012207) #30	PDIA6 (ENSMLUG00000012215) #31	SLC66A3 (ENSMLUG00000015653) #34	ROCK2 (ENSMLUG00000015664) #35	ENSMLUG00000003384 #36	GREB1 (ENSMLUG00000000221) #37
Megabat	MODERN SPECIES	72															TAF1B (ENSPVAG00000002000) #21	GRHL1 (ENSPVAG00000002002) #22
Equus	ANCESTRAL SPECIES	7	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Donkey	MODERN SPECIES	26	ENSEASG00005022219	ENSEASG00005035871 #7	CMPK2 (ENSEASG00005022223) #8	RSAD2 (ENSEASG00005022224) #9	RNF144A (ENSEASG00005022228) #10	ID2 (ENSEASG00005000025) #11	KIDINS220 (ENSEASG00005000060) #12	MBOAT2 (ENSEASG00005000101) #13	ASAP2 (ENSEASG00005000562) #14	ITGB1BP1 (ENSEASG00005003969) #16	CPSF3 (ENSEASG00005003970) #17	ENSEASG00005026278 #18	ADAM17 (ENSEASG00005004001) #19	YWHAQ (ENSEASG00005004792) #20	TAF1B (ENSEASG00005004803) #21	GRHL1 (ENSEASG00005028173) #22	KLF11 (ENSEASG00005004881) #23	CYS1 (ENSEASG00005025190) #25	RRM2 (ENSEASG00005004892) #26	HPCAL1 (ENSEASG00005004903) #27	ENSEASG00005004910 #28	NOL10 (ENSEASG00005004919) #29	ATP6V1C2 (ENSEASG00005004932) #30	PDIA6 (ENSEASG00005004942) #31	KCNF1 (ENSEASG00005027361) #32	C2orf50 (ENSEASG00005004947) #33	ENSEASG00005034683 #34	ROCK2 (ENSEASG00005005236) #35	E2F6 (ENSEASG00005008212) #36	GREB1 (ENSEASG00005008223) #37	NTSR2 (ENSEASG00005008238)
Horse	MODERN SPECIES	6	CMPK2 (ENSECAG00000012773) #8	RSAD2 (ENSECAG00000010055) #9	RNF144A (ENSECAG00000009610) #10	ID2 (ENSECAG00000008738) #11	KIDINS220 (ENSECAG00000019263) #12	MBOAT2 (ENSECAG00000015922) #13	ENSECAG00000054846	ASAP2 (ENSECAG00000024278) #14	ITGB1BP1 (ENSECAG00000024193) #16	CPSF3 (ENSECAG00000019911) #17	IAH1 (ENSECAG00000018250) #18	ADAM17 (ENSECAG00000005760) #19	ENSECAG00000050309	YWHAQ (ENSECAG00000004925) ##20	TAF1B (ENSECAG00000023244) #21	GRHL1 (ENSECAG00000015969) #22	KLF11 (ENSECAG00000015820) #23	CYS1 (ENSECAG00000039359) #25	RRM2 (ENSECAG00000007464) #26	HPCAL1 (ENSECAG00000040270) #27	ODC1 (ENSECAG00000022690) #28	NOL10 (ENSECAG00000015177) #29	ATP6V1C2 (ENSECAG00000010555) #30	PDIA6 (ENSECAG00000022717) #31	KCNF1 (ENSECAG00000002935) #32	C15H2orf50 (ENSECAG00000022456) #33	SLC66A3 (ENSECAG00000020784) #34	ENSECAG00000053488	ROCK2 (ENSECAG00000009872) #35	E2F6 (ENSECAG00000023944) #36	GREB1 (ENSECAG00000018308) #37
Carnivora	ANCESTRAL SPECIES	19	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Felidae	ANCESTRAL SPECIES	3	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000169919
Cat	MODERN SPECIES	2	DCDC2C (ENSFCAG00000044946)	SOX11 (ENSFCAG00000039092) #7	CMPK2 (ENSFCAG00000022513) #8	RSAD2 (ENSFCAG00000035139) #9	RNF144A (ENSFCAG00000000709) #10	ID2 (ENSFCAG00000026937) #11	KIDINS220 (ENSFCAG00000029422) #12	MBOAT2 (ENSFCAG00000027684) #13	ASAP2 (ENSFCAG00000007850) #14	ITGB1BP1 (ENSFCAG00000034320) #16	CPSF3 (ENSFCAG00000007852) #17	IAH1 (ENSFCAG00000023291) #18	ADAM17 (ENSFCAG00000007853) #19	YWHAQ (ENSFCAG00000007854) ##20	TAF1B (ENSFCAG00000007855) #21	GRHL1 (ENSFCAG00000007856) #22	KLF11 (ENSFCAG00000030965) #23	CYS1 (ENSFCAG00000045113) #25	RRM2 (ENSFCAG00000003942) #26	HPCAL1 (ENSFCAG00000009252) #27	ODC1 (ENSFCAG00000027500) #28	NOL10 (ENSFCAG00000009255) #29	ATP6V1C2 (ENSFCAG00000009257) #30	PDIA6 (ENSFCAG00000009258) #31	KCNF1 (ENSFCAG00000031035) #32	CA3H2orf50 (ENSFCAG00000044685) #33	SLC66A3 (ENSFCAG00000014335) #34	ROCK2 (ENSFCAG00000024216) #35	E2F6 (ENSFCAG00000011952) #36	GREB1 (ENSFCAG00000008510) #37	LPIN1 (ENSFCAG00000008518)
Panthera	ANCESTRAL SPECIES	2	ENSGT00390000001793	ENSGT00940000162396	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000169919
Tiger	MODERN SPECIES	581	ALLC (ENSPTIG00000019525)	DCDC2C (ENSPTIG00000019551)	ENSPTIG00000019591	RSAD2 (ENSPTIG00000019625) #9	RNF144A (ENSPTIG00000019714) #10	ID2 (ENSPTIG00000019724) #11	KIDINS220 (ENSPTIG00000019843) #12	MBOAT2 (ENSPTIG00000020033) #13	ASAP2 (ENSPTIG00000000985) #14	ITGB1BP1 (ENSPTIG00000002156) #16	CPSF3 (ENSPTIG00000003920) #17	IAH1 (ENSPTIG00000005299) #18	ADAM17 (ENSPTIG00000005404) #19	YWHAQ (ENSPTIG00000006178) #20	TAF1B (ENSPTIG00000006228) #21	GRHL1 (ENSPTIG00000007003) #22	KLF11 (ENSPTIG00000007061) #23	RRM2 (ENSPTIG00000007390) #26	ODC1 (ENSPTIG00000007491) #28
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00390000001793	ENSGT00940000162396	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000169919
lion	MODERN SPECIES	3	ALLC (ENSPLOG00000002071)	CMPK2 (ENSPLOG00000002115) #8	RSAD2 (ENSPLOG00000002128) #9	RNF144A (ENSPLOG00000002146) #10	ID2 (ENSPLOG00000002192) #11	KIDINS220 (ENSPLOG00000002235) #12	MBOAT2 (ENSPLOG00000002421) #13	ASAP2 (ENSPLOG00000002531) #14	ITGB1BP1 (ENSPLOG00000002692) #16	CPSF3 (ENSPLOG00000002732) #17	IAH1 (ENSPLOG00000002790) #18	ADAM17 (ENSPLOG00000002823) #19	YWHAQ (ENSPLOG00000002873) #20	ENSPLOG00000002895	TAF1B (ENSPLOG00000002921) #21	GRHL1 (ENSPLOG00000002984) #22	KLF11 (ENSPLOG00000003042) #23	CYS1 (ENSPLOG00000003056) #25	RRM2 (ENSPLOG00000003069) #26	HPCAL1 (ENSPLOG00000003090) #27	ODC1 (ENSPLOG00000003104) #28	NOL10 (ENSPLOG00000003174) #29	ATP6V1C2 (ENSPLOG00000003251) #30	PDIA6 (ENSPLOG00000003350) #31	KCNF1 (ENSPLOG00000003383) #32	C2orf50 (ENSPLOG00000003392) #33	SLC66A3 (ENSPLOG00000003412) #34	ROCK2 (ENSPLOG00000003439) #35	E2F6 (ENSPLOG00000003470) #36	GREB1 (ENSPLOG00000003614) #37	ENSPLOG00000003731
leopard	DUPLICATION
leopard	MODERN SPECIES		CMPK2 (ENSPPRG00000015716) #8	RSAD2 (ENSPPRG00000015738) #9	RNF144A (ENSPPRG00000015759) #10	ENSPPRG00000015776 #11	ID2 (ENSPPRG00000015804) #11	KIDINS220 (ENSPPRG00000016171) #12	MBOAT2 (ENSPPRG00000016261) #13	ASAP2 (ENSPPRG00000016539) #14	ITGB1BP1 (ENSPPRG00000016726) #16	CPSF3 (ENSPPRG00000016790) #17	IAH1 (ENSPPRG00000016876) #18	ADAM17 (ENSPPRG00000016991) #19	ENSPPRG00000017043	YWHAQ (ENSPPRG00000017069) #20	TAF1B (ENSPPRG00000017125) #21	GRHL1 (ENSPPRG00000017279) #22	KLF11 (ENSPPRG00000017354) #23	RRM2 (ENSPPRG00000017387) #26	ENSPPRG00000017433 #27	HPCAL1 (ENSPPRG00000017486) #27	ODC1 (ENSPPRG00000017534) #28	NOL10 (ENSPPRG00000017868) #29	ATP6V1C2 (ENSPPRG00000018018) #30	PDIA6 (ENSPPRG00000018159) #31	KCNF1 (ENSPPRG00000020006) #32	C2orf50 (ENSPPRG00000018217) #33	SLC66A3 (ENSPPRG00000018314) #34	ROCK2 (ENSPPRG00000018610) #35	E2F6 (ENSPPRG00000018702) #36	GREB1 (ENSPPRG00000019270) #37	LPIN1 (ENSPPRG00000019764)
leopard	MODERN SPECIES	8	FAM229B (ENSPPRG00000008910)	TUBE1 (ENSPPRG00000009003)	CCN6 (ENSPPRG00000010602)	ENSPPRG00000016675	FYN (ENSPPRG00000013454)	TRAF3IP2 (ENSPPRG00000024379)	REV3L (ENSPPRG00000023393)	MFSD4B (ENSPPRG00000023123)	SLC16A10 (ENSPPRG00000022877)	ENSPPRG00000017018	ENSPPRG00000000320	ENSPPRG00000017034	GTF3C6 (ENSPPRG00000000921)	AMD1 (ENSPPRG00000001451)	CDK19 (ENSPPRG00000003314)	ENSPPRG00000003507 #22	SLC22A16 (ENSPPRG00000004411)	DDO (ENSPPRG00000005274)	METTL24 (ENSPPRG00000005676)	ENSPPRG00000005810	CDC40 (ENSPPRG00000007523)	WASF1 (ENSPPRG00000008895)	GPR6 (ENSPPRG00000008981)	FIG4 (ENSPPRG00000009750)	ENSPPRG00000011355	ENSPPRG00000011833	ENSPPRG00000012378	ENSPPRG00000013288	ZBTB24 (ENSPPRG00000013659)	MICAL1 (ENSPPRG00000023020)	SMPD2 (ENSPPRG00000000099)
Caniformia	ANCESTRAL SPECIES	18	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Canidae	ANCESTRAL SPECIES	46	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Canis_lupus	ANCESTRAL SPECIES	10	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Dog	MODERN SPECIES	8	DCDC2C (ENSCAFG00845022069)	SOX11 (ENSCAFG00845022195) #7	CMPK2 (ENSCAFG00845022277) #8	RSAD2 (ENSCAFG00845022316) #9	RNF144A (ENSCAFG00845022407) #10	ID2 (ENSCAFG00845022749) #11	KIDINS220 (ENSCAFG00845023013) #12	MBOAT2 (ENSCAFG00845023611) #13	ASAP2 (ENSCAFG00845023702) #14	ITGB1BP1 (ENSCAFG00845024064) #16	CPSF3 (ENSCAFG00845024218) #17	IAH1 (ENSCAFG00845024429) #18	ADAM17 (ENSCAFG00845024728) #19	YWHAQ (ENSCAFG00845025457) #20	TAF1B (ENSCAFG00845025510) #21	GRHL1 (ENSCAFG00845025614) #22	KLF11 (ENSCAFG00845025845) #23	CYS1 (ENSCAFG00845025907) #25	RRM2 (ENSCAFG00845025952) #26	HPCAL1 (ENSCAFG00845026130) #27	ODC1 (ENSCAFG00845026175) #28	NOL10 (ENSCAFG00845026340) #29	ATP6V1C2 (ENSCAFG00845026644) #30	PDIA6 (ENSCAFG00845026954) #31	KCNF1 (ENSCAFG00845027200) #32	C2orf50 (ENSCAFG00845027230) #33	SLC66A3 (ENSCAFG00845027286) #34	ROCK2 (ENSCAFG00845027461) #35	E2F6 (ENSCAFG00845028092) #36	GREB1 (ENSCAFG00845028242) #37	NTSR2 (ENSCAFG00845028451)
Dingo	MODERN SPECIES	223	DCDC2C (ENSCAFG00020004927)	SOX11 (ENSCAFG00020004918) #7	ENSCAFG00020004906	RSAD2 (ENSCAFG00020004883) #9	RNF144A (ENSCAFG00020004868) #10	ID2 (ENSCAFG00020004823) #11	KIDINS220 (ENSCAFG00020002173) #12	MBOAT2 (ENSCAFG00020001936) #13	ASAP2 (ENSCAFG00020000377) #14	ITGB1BP1 (ENSCAFG00020000149) #16	CPSF3 (ENSCAFG00020026799) #17	IAH1 (ENSCAFG00020026797) #18	ENSCAFG00020026796 #19	YWHAQ (ENSCAFG00020026795) #20	TAF1B (ENSCAFG00020026787) #21	GRHL1 (ENSCAFG00020026767) #22	KLF11 (ENSCAFG00020026763) #23	CYS1 (ENSCAFG00020026758) #25	RRM2 (ENSCAFG00020026744) #26	HPCAL1 (ENSCAFG00020026737) #27	ODC1 (ENSCAFG00020026728) #28	NOL10 (ENSCAFG00020026722) #29	ATP6V1C2 (ENSCAFG00020026718) #30	PDIA6 (ENSCAFG00020026714) #31	KCNF1 (ENSCAFG00020026713) #32	C2orf50 (ENSCAFG00020026711) #33	SLC66A3 (ENSCAFG00020026709) #34	ROCK2 (ENSCAFG00020026578) #35	E2F6 (ENSCAFG00020026554) #36	GREB1 (ENSCAFG00020026552) #37	NTSR2 (ENSCAFG00020026550)
Red fox	MODERN SPECIES	76	ENSVVUG00000008582	ENSVVUG00000008555	ENSVVUG00000008545	RSAD2 (ENSVVUG00000008530) #9	RNF144A (ENSVVUG00000008507) #10	ID2 (ENSVVUG00000008464) #11	KIDINS220 (ENSVVUG00000003457) #12	MBOAT2 (ENSVVUG00000002534) #13	ASAP2 (ENSVVUG00000002403) #14	ITGB1BP1 (ENSVVUG00000002216) #16	CPSF3 (ENSVVUG00000002194) #17	IAH1 (ENSVVUG00000002169) #18	ADAM17 (ENSVVUG00000002136) #19	YWHAQ (ENSVVUG00000002125) #20	TAF1B (ENSVVUG00000001641) #21	GRHL1 (ENSVVUG00000001610) #22	KLF11 (ENSVVUG00000001585) #23	RRM2 (ENSVVUG00000001484) #26	HPCAL1 (ENSVVUG00000001457) #27	ODC1 (ENSVVUG00000001437) #28	ENSVVUG00000001420	NOL10 (ENSVVUG00000001394) #29	ATP6V1C2 (ENSVVUG00000001351) #30	PDIA6 (ENSVVUG00000001332) #31	KCNF1 (ENSVVUG00000001317) #32	CUNH2orf50 (ENSVVUG00000001296) #33	PQLC3 (ENSVVUG00000001281) #34	ROCK2 (ENSVVUG00000001206) #35	E2F6 (ENSVVUG00000001169) #36	GREB1 (ENSVVUG00000001085) #37	NTSR2 (ENSVVUG00000001062)
Caniformia_b	ANCESTRAL SPECIES	11	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b	ENSGT00940000157219
Mustelinae	ANCESTRAL SPECIES	55	ENSGT00940000161652 #7	ENSGT00990000204082	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b	ENSGT00940000157219
American mink	MODERN SPECIES	7	DCDC2C (ENSNVIG00000015778)	SOX11 (ENSNVIG00000015756) #7	ENSNVIG00000015750	RSAD2 (ENSNVIG00000015718) #9	R144A (ENSNVIG00000015685) #10	ID2 (ENSNVIG00000015663) #11	KIDINS220 (ENSNVIG00000015535) #12	MBOAT2 (ENSNVIG00000015525) #13	ASAP2 (ENSNVIG00000015416) #14	ITGB1BP1 (ENSNVIG00000015345) #16	CPSF3 (ENSNVIG00000015301) #17	IAH1 (ENSNVIG00000015262) #18	ADAM17 (ENSNVIG00000015197) #19	YWHAQ (ENSNVIG00000015162) #20	TAF1B (ENSNVIG00000015127) #21	GRHL1 (ENSNVIG00000015046) #22	KLF11 (ENSNVIG00000015016) #23	RRM2 (ENSNVIG00000014985) #26	ENSNVIG00000014964	DCOR (ENSNVIG00000014941) #28	NOL10 (ENSNVIG00000014778) #29	ATP6V1C2 (ENSNVIG00000014715) #30	PDIA6 (ENSNVIG00000014505) #31	KCNF1 (ENSNVIG00000014487) #32	C2orf50 (ENSNVIG00000014464) #33	SLC66A3 (ENSNVIG00000014450) #34	ROCK2 (ENSNVIG00000014361) #35	E2F6 (ENSNVIG00000014248) #36	GREB1 (ENSNVIG00000014163) #37	NTSR2 (ENSNVIG00000014146)	LPIN1 (ENSNVIG00000014063)
Ferret	MODERN SPECIES	178	RSAD2 (ENSMPUG00000013146) #9	RNF144A (ENSMPUG00000013154) #10	ENSMPUG00000013172	ENSMPUG00000013173	ID2 (ENSMPUG00000013178) #11	KIDINS220 (ENSMPUG00000013181) #12	MBOAT2 (ENSMPUG00000013191) #13	ASAP2 (ENSMPUG00000013197) #14	ITGB1BP1 (ENSMPUG00000013210) #16	CPSF3 (ENSMPUG00000013213) #17	IAH1 (ENSMPUG00000013218) #18	ADAM17 (ENSMPUG00000013236) #19	ENSMPUG00000013249	YWHAQ (ENSMPUG00000013252) #20	TAF1B (ENSMPUG00000013256) #21	GRHL1 (ENSMPUG00000013263) #22	ENSMPUG00000013277	ENSMPUG00000013281	KLF11 (ENSMPUG00000013287) #23	RRM2 (ENSMPUG00000013295) #26	HPCAL1 (ENSMPUG00000013302) #27	ODC1 (ENSMPUG00000013321) #28	NOL10 (ENSMPUG00000013325) #29	ATP6V1C2 (ENSMPUG00000013450) #30	ENSMPUG00000019480	PDIA6 (ENSMPUG00000013530) #31	KCNF1 (ENSMPUG00000019481) #32	ENSMPUG00000013537	C2orf50 (ENSMPUG00000013541) #33	SLC66A3 (ENSMPUG00000013545) #34	ROCK2 (ENSMPUG00000013549) #35
Ursidae	ANCESTRAL SPECIES	9	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00390000012138.a.a.j.s	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b	ENSGT00940000157219
Giant Panda	MODERN SPECIES	14	SOX11 (ENSAMEG00000013354) #7	CMPK2 (ENSAMEG00000013345) #8	RSAD2 (ENSAMEG00000013333) #9	RNF144A (ENSAMEG00000013324) #10	ID2 (ENSAMEG00000026711) #11	KIDINS220 (ENSAMEG00000008328) #12	MBOAT2 (ENSAMEG00000008373) #13	ENSAMEG00000024246	ASAP2 (ENSAMEG00000008406) #14	ITGB1BP1 (ENSAMEG00000008478) #16	CPSF3 (ENSAMEG00000008493) #17	IAH1 (ENSAMEG00000008545) #18	ADAM17 (ENSAMEG00000008569) #19	YWHAQ (ENSAMEG00000008618) #20	TAF1B (ENSAMEG00000011301) #21	GRHL1 (ENSAMEG00000011320) #22	KLF11 (ENSAMEG00000011355) #23	RRM2 (ENSAMEG00000011372) #26	HPCAL1 (ENSAMEG00000029791) #27	ODC1 (ENSAMEG00000011415) #28	NOL10 (ENSAMEG00000011438) #29	ATP6V1C2 (ENSAMEG00000011506) #30	ENSAMEG00000011555 #31	KCNF1 (ENSAMEG00000019267) #32	C2orf50 (ENSAMEG00000011580) #33	SLC66A3 (ENSAMEG00000011583) #34	ENSAMEG00000026567	ROCK2 (ENSAMEG00000011596) #35	E2F6 (ENSAMEG00000011667) #36	GREB1 (ENSAMEG00000012841) #37	NTSR2 (ENSAMEG00000012823)
Ursus	ANCESTRAL SPECIES	125	ENSGT00390000001793	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00390000012138.a.a.j.s.a	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b	ENSGT00940000157219
Polar bear	MODERN SPECIES	89	ENSUMAG00000003902	RSAD2 (ENSUMAG00000003893) #9	RNF144A (ENSUMAG00000003876) #10	ID2 (ENSUMAG00000003840) #11	KIDINS220 (ENSUMAG00000003833) #12	MBOAT2 (ENSUMAG00000003744) #13	ENSUMAG00000003713	ASAP2 (ENSUMAG00000003695) #14	ITGB1BP1 (ENSUMAG00000003689) #16	CPSF3 (ENSUMAG00000003676) #17	ENSUMAG00000003666 #18	ENSUMAG00000003662 #18	ADAM17 (ENSUMAG00000003653) #19	YWHAQ (ENSUMAG00000003646) #20	TAF1B (ENSUMAG00000003559) #21	GRHL1 (ENSUMAG00000003494) #22	KLF11 (ENSUMAG00000003481) #23	RRM2 (ENSUMAG00000003431) #26	HPCAL1 (ENSUMAG00000003415) #27	ODC1 (ENSUMAG00000003406) #28	NOL10 (ENSUMAG00000003385) #29	ATP6V1C2 (ENSUMAG00000003318) #30	PDIA6 (ENSUMAG00000003308) #31	KCNF1 (ENSUMAG00000003301) #32	C2orf50 (ENSUMAG00000003297) #33	SLC66A3 (ENSUMAG00000003286) #34	ROCK2 (ENSUMAG00000002537) #35	E2F6 (ENSUMAG00000002414) #36	GREB1 (ENSUMAG00000002360) #37	LPIN1 (ENSUMAG00000002345)	TRIB2 (ENSUMAG00000002335)
American black bear	MODERN SPECIES	1065															TAF1B (ENSUAMG00000021601) #21	GRHL1 (ENSUAMG00000021603) #22	KLF11 (ENSUAMG00000021605) #23	RRM2 (ENSUAMG00000021607) #26
Artiodactyla	ANCESTRAL SPECIES	16	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Suina	ANCESTRAL SPECIES	13	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Chacoan peccary	MODERN SPECIES	775	DCDC2C (ENSCWAG00000009777)	SOX11 (ENSCWAG00000009865) #7	CMPK2 (ENSCWAG00000009912) #8	RSAD2 (ENSCWAG00000009959) #9	RNF144A (ENSCWAG00000010020) #10	ID2 (ENSCWAG00000010057) #11	KIDINS220 (ENSCWAG00000010112) #12	MBOAT2 (ENSCWAG00000010541) #13	ASAP2 (ENSCWAG00000010606) #14	ITGB1BP1 (ENSCWAG00000010974) #16	CPSF3 (ENSCWAG00000011057) #17	IAH1 (ENSCWAG00000011129) #18	ADAM17 (ENSCWAG00000011306) #19	YWHAQ (ENSCWAG00000011406) #20	TAF1B (ENSCWAG00000011471) #21	GRHL1 (ENSCWAG00000011623) #22	KLF11 (ENSCWAG00000011855) #23	CYS1 (ENSCWAG00000012002) #25	RRM2 (ENSCWAG00000012081) #26	HPCAL1 (ENSCWAG00000012123) #27	ODC1 (ENSCWAG00000012155) #28	NOL10 (ENSCWAG00000012218) #29	ATP6V1C2 (ENSCWAG00000012466) #30	PDIA6 (ENSCWAG00000013173) #31	KCNF1 (ENSCWAG00000013309) #32	C2orf50 (ENSCWAG00000013327) #33	SLC66A3 (ENSCWAG00000013371) #34	ROCK2 (ENSCWAG00000013496) #35
Pig	MODERN SPECIES	11	SOX11 (ENSSSCG00000008649) #7	ENSSSCG00000047407	CMPK2 (ENSSSCG00000008647) #8	RSAD2 (ENSSSCG00000008648) #9	RNF144A (ENSSSCG00000008646) #10	ID2 (ENSSSCG00000008645) #11	KIDINS220 (ENSSSCG00000008644) #12	MBOAT2 (ENSSSCG00000023539) #13	ASAP2 (ENSSSCG00000008642) #14	ITGB1BP1 (ENSSSCG00000029313) #16	CPSF3 (ENSSSCG00000020799) #17	IAH1 (ENSSSCG00000008640) #18	ADAM17 (ENSSSCG00000008641) #19	YWHAQ (ENSSSCG00000008638) ##20	TAF1B (ENSSSCG00000008637) #21	GRHL1 (ENSSSCG00000026068) #22	KLF11 (ENSSSCG00000038643) #23	CYS1 (ENSSSCG00000040267) #25	ENSSSCG00000031741 #26	HPCAL1 (ENSSSCG00000003663) #27	ODC1 (ENSSSCG00000027121) #28	NOL10 (ENSSSCG00000008635) #29	ATP6V1C2 (ENSSSCG00000008634) #30	PDIA6 (ENSSSCG00000008633) #31	KCNF1 (ENSSSCG00000033463) #32	SLC66A3 (ENSSSCG00000008631) #34	ROCK2 (ENSSSCG00000008629) #35	E2F6 (ENSSSCG00000026161) #36	GREB1 (ENSSSCG00000025483) #37	NTSR2 (ENSSSCG00000008625)	LPIN1 (ENSSSCG00000008624)
Artiodactyla_a	ANCESTRAL SPECIES	15	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990.k #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Camelidae	ANCESTRAL SPECIES	12	ENSGT00940000159468	ENSGT00390000001793	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990.k #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b	ENSGT00940000157219	ENSGT00950000182986.a.b.a
Arabian camel	MODERN SPECIES	6	ALLC (ENSCDRG00005014851)	CMPK2 (ENSCDRG00005015247) #8	RSAD2 (ENSCDRG00005015263) #9	RNF144A (ENSCDRG00005015339) #10	ID2 (ENSCDRG00005015367) #11	KIDINS220 (ENSCDRG00005015440) #12	MBOAT2 (ENSCDRG00005016283) #13	ASAP2 (ENSCDRG00005016761) #14	ITGB1BP1 (ENSCDRG00005021375) #16	CPSF3 (ENSCDRG00005021386) #17	IAH1 (ENSCDRG00005021394) #18	ADAM17 (ENSCDRG00005021400) #19	YWHAQ (ENSCDRG00005021407) #20	ENSCDRG00005021412	TAF1B (ENSCDRG00005021414) #21	GRHL1 (ENSCDRG00005021421) #22	KLF11 (ENSCDRG00005021426) #23	RRM2 (ENSCDRG00005021436) #26	HPCAL1 (ENSCDRG00005021441) #27	ODC1 (ENSCDRG00005021445) #28	NOL10 (ENSCDRG00005021454) #29	ATP6V1C2 (ENSCDRG00005021467) #30	PDIA6 (ENSCDRG00005021479) #31	C2orf50 (ENSCDRG00005003354) #33	SLC66A3 (ENSCDRG00005003399) #34	ROCK2 (ENSCDRG00005003503) #35	E2F6 (ENSCDRG00005003569) #36	GREB1 (ENSCDRG00005003633) #37	NTSR2 (ENSCDRG00005003795)	LPIN1 (ENSCDRG00005003875)	TRIB2 (ENSCDRG00005004180)
Alpaca	MODERN SPECIES	3691															TAF1B (ENSVPAG00000010841) #21	GRHL1 (ENSVPAG00000010842) #22
Artiodactyla_b	ANCESTRAL SPECIES	14	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990.k #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Pecora	ANCESTRAL SPECIES	5	ENSGT00950000182858.B.a.d	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990.k #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a.fb.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Yarkand deer	MODERN SPECIES	2	CMPK2 (ENSCHYG00000015445) #8	RSAD2 (ENSCHYG00000015364) #9	RNF144A (ENSCHYG00000015190) #10	ID2 (ENSCHYG00000015082) #11	KIDINS220 (ENSCHYG00000013747) #12	MBOAT2 (ENSCHYG00000013496) #13	ENSCHYG00000013479	ASAP2 (ENSCHYG00000012499) #14	ENSCHYG00000012310 #16	CPSF3 (ENSCHYG00000012112) #17	IAH1 (ENSCHYG00000012019) #18	ADAM17 (ENSCHYG00000011771) #19	YWHAQ (ENSCHYG00000011701) #20	ENSCHYG00000011680	TAF1B (ENSCHYG00000011467) #21	GRHL1 (ENSCHYG00000011321) #22	KLF11 (ENSCHYG00000011297) #23	ENSCHYG00000011258 #26	ENSCHYG00000011216	HPCAL1 (ENSCHYG00000011179) #27	ENSCHYG00000011027 #28	NOL10 (ENSCHYG00000010137) #29	ATP6V1C2 (ENSCHYG00000009711) #30	PDIA6 (ENSCHYG00000009406) #31	KCNF1 (ENSCHYG00000009374) #32	C2orf50 (ENSCHYG00000009330) #33	SLC66A3 (ENSCHYG00000009293) #34	ENSCHYG00000009170	ROCK2 (ENSCHYG00000008822) #35	ENSCHYG00000008703 #36	GREB1 (ENSCHYG00000008543) #37
Percora_a	ANCESTRAL SPECIES	13	ENSGT00950000182858.B.b.b	ENSGT00950000182858.B.a.d	ENSGT00990000204082	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990.k #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a.fb.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Bovidae	ANCESTRAL SPECIES	5	ENSGT00950000182858.B.a.d	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990.k #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a.fb.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Caprinae	ANCESTRAL SPECIES	9	ENSGT00940000154706.ib	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464.a #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990.k #16	ENSGT00940000155699.d #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a.fb.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b
Goat	DUPLICATION
Goat	MODERN SPECIES	2	CMPK2 (ENSCHIG00000012790) #8	RSAD2 (ENSCHIG00000021832) #9	RNF144A (ENSCHIG00000016336) #10	ENSCHIG00000018361 #11	KIDINS220 (ENSCHIG00000026710) #12	MBOAT2 (ENSCHIG00000026251) #13	ENSCHIG00000012410	ASAP2 (ENSCHIG00000022796) #14	ENSCHIG00000020028 #16	CPSF3 (ENSCHIG00000013973) #17	IAH1 (ENSCHIG00000016467) #18	ADAM17 (ENSCHIG00000013595) #19	YWHAQ (ENSCHIG00000012589) #20	ENSCHIG00000012158 #15	TAF1B (ENSCHIG00000013783) #21	ENSCHIG00000026755 #22	KLF11 (ENSCHIG00000011294) #23	CYS1 (ENSCHIG00000018115) #25	ENSCHIG00000004531	RRM2 (ENSCHIG00000009694) #26	HPCAL1 (ENSCHIG00000019475) #27	ENSCHIG00000027003 #28	NOL10 (ENSCHIG00000012935) #29	ATP6V1C2 (ENSCHIG00000017272) #30	PDIA6 (ENSCHIG00000007838) #31	KCNF1 (ENSCHIG00000012739) #32	C2orf50 (ENSCHIG00000019292) #33	SLC66A3 (ENSCHIG00000016355) #34	ROCK2 (ENSCHIG00000013173) #35	E2F6 (ENSCHIG00000016333) #36	GREB1 (ENSCHIG00000017667) #37
Goat	MODERN SPECIES	10	CNP (ENSCHIG00000007203)	DNAJC7 (ENSCHIG00000026453)	NKIRAS2 (ENSCHIG00000027127)	ZNF385C (ENSCHIG00000013858)	DHX58 (ENSCHIG00000017011)	KAT2A (ENSCHIG00000021124)	HSPB9 (ENSCHIG00000011056)	RAB5C (ENSCHIG00000012960)	KCNH4 (ENSCHIG00000004460)	HCRT (ENSCHIG00000025119)	GHDC (ENSCHIG00000008301)	STAT5B (ENSCHIG00000021723)	STAT5A (ENSCHIG00000022084)	STAT3 (ENSCHIG00000020307)	CAVIN1 (ENSCHIG00000021967)	ENSCHIG00000010030 #22	ATP6V0A1 (ENSCHIG00000023886)	NAGLU (ENSCHIG00000025669)	HSD17B1 (ENSCHIG00000024608)	COASY (ENSCHIG00000015825)	MLX (ENSCHIG00000008566)	PSMC3IP (ENSCHIG00000016634)	RETREG3 (ENSCHIG00000021347)	TUBG1 (ENSCHIG00000023630)	TUBG2 (ENSCHIG00000017871)	PLEKHH3 (ENSCHIG00000009375)	CCR10 (ENSCHIG00000006150)	CNTNAP1 (ENSCHIG00000021718)	EZH1 (ENSCHIG00000021460)	RAMP2 (ENSCHIG00000009603)	VPS25 (ENSCHIG00000015624)
Rambouillet Sheep	MODERN SPECIES	19	ENSOARG00020006554	ENSOARG00020006589 #9	CMPK2 (ENSOARG00020006720) #8	ENSOARG00020006787 #9	RNF144A (ENSOARG00020006856) #10	ID2 (ENSOARG00020006940) #11	KIDINS220 (ENSOARG00020007030) #12	MBOAT2 (ENSOARG00020007653) #13	ASAP2 (ENSOARG00020007758) #14	ITGB1BP1 (ENSOARG00020008178) #16	CPSF3 (ENSOARG00020008301) #17	IAH1 (ENSOARG00020008401) #18	ADAM17 (ENSOARG00020008512) #19	YWHAQ (ENSOARG00020008682) #20	TAF1B (ENSOARG00020008727) #21	GRHL1 (ENSOARG00020008773) #22	KLF11 (ENSOARG00020008965) #23	CYS1 (ENSOARG00020009035) #25	ENSOARG00020009097 #26	HPCAL1 (ENSOARG00020009151) #27	ODC1 (ENSOARG00020009225) #28	NOL10 (ENSOARG00020009305) #29	ATP6V1C2 (ENSOARG00020009600) #30	PDIA6 (ENSOARG00020009823) #31	KCNF1 (ENSOARG00020010045) #32	C2orf50 (ENSOARG00020010067) #33	SLC66A3 (ENSOARG00020010159) #34	ROCK2 (ENSOARG00020010271) #35	E2F6 (ENSOARG00020011096) #36	GREB1 (ENSOARG00020011244) #37	NTSR2 (ENSOARG00020012412)
Bovinae	ANCESTRAL SPECIES	4	ENSGT00950000182858.B.b.b	ENSGT00950000182858.B.a.d	ENSGT00990000204082	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990.k #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a.fb.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00990000203553.c.b.o.b	ENSGT00940000155734 #36	ENSGT00390000008041.C #37
Bos	ANCESTRAL SPECIES	5	ENSGT00950000182858.B.a.d	ENSGT00990000204082	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990.k #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.b ##20	ENSGT01100000263481.n.a.a.a.a.a.a.a.a.a.a.a.b	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a.fb.a #28	ENSGT00390000007900 #29	ENSGT01100000263480.a.a.b.a.a.a.b.a.a.a.a.a.a.a.a.a	ENSGT00390000004263.b #30	ENSGT00940000155646.c #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT00990000203553.c.b.o.b	ENSGT01030000234517.D #35	ENSGT00940000155734 #36
Bos_a	ANCESTRAL SPECIES	6	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990.k #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT01100000263481.n.a.a.a.a.a.a.a.a.a.a.a.b	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a.fb.a #28	ENSGT00390000007900 #29	ENSGT01100000263480.a.a.b.a.a.a.b.a.a.a.a.a.a.a.a.a	ENSGT00390000004263.b #30	ENSGT00940000155646.c #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00990000203553.c.b.o.b	ENSGT00940000155734 #36
Domestic yak	MODERN SPECIES	28	RSAD2 (ENSBGRG00000015611) #9	RNF144A (ENSBGRG00000015479) #10	ID2 (ENSBGRG00000015396) #11	ENSBGRG00000015325	KIDINS220 (ENSBGRG00000014341) #12	MBOAT2 (ENSBGRG00000014129) #13	ASAP2 (ENSBGRG00000013865) #14	ITGB1BP1 (ENSBGRG00000013746) #16	CPSF3 (ENSBGRG00000013338) #17	IAH1 (ENSBGRG00000013251) #18	ADAM17 (ENSBGRG00000012923) #19	YWHAQ (ENSBGRG00000012872) #20	ENSBGRG00000012819 ##20	ENSBGRG00000012787	TAF1B (ENSBGRG00000012581) #21	GRHL1 (ENSBGRG00000011381) #22	ENSBGRG00000011303	KLF11 (ENSBGRG00000011215) #23	CYS1 (ENSBGRG00000011167) #25	RRM2 (ENSBGRG00000010858) #26	HPCAL1 (ENSBGRG00000010770) #27	ENSBGRG00000010591 #28	ENSBGRG00000010565	NOL10 (ENSBGRG00000024949) #29	ENSBGRG00000024916	ENSBGRG00000024848 #30	ENSBGRG00000024734 #31	KCNF1 (ENSBGRG00000024709) #32	C2orf50 (ENSBGRG00000024690) #33	ENSBGRG00000024588 #34	ENSBGRG00000024544
Wild yak	MODERN SPECIES	2251															TAF1B (ENSBMUG00000018677) #21	GRHL1 (ENSBMUG00000018698) #22	KLF11 (ENSBMUG00000018725) #23	RRM2 (ENSBMUG00000018749) #26
Bos_b	ANCESTRAL SPECIES	16	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990.k #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.b ##20	ENSGT01100000263481.n.a.a.a.a.a.a.a.a.a.a.a.b	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a.fb.a #28	ENSGT00390000007900 #29	ENSGT01100000263480.a.a.b.a.a.a.b.a.a.a.a.a.a.a.a.a	ENSGT00390000004263.b #30	ENSGT00940000155646.c #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT00990000203553.c.b.o.b	ENSGT01030000234517.D #35	ENSGT00940000155734 #36
Cow	MODERN SPECIES	2	CMPK2 (ENSBTAG00000019979) #8	RSAD2 (ENSBTAG00000016061) #9	RNF144A (ENSBTAG00000044064) #10	ENSBTAG00000037793	ID2 (ENSBTAG00000021187) #11	KIDINS220 (ENSBTAG00000007963) #12	MBOAT2 (ENSBTAG00000008160) #13	ASAP2 (ENSBTAG00000002329) #14	ITGB1BP1 (ENSBTAG00000013063) #16	CPSF3 (ENSBTAG00000019735) #17	IAH1 (ENSBTAG00000001140) #18	ADAM17 (ENSBTAG00000001141) #19	YWHAQ (ENSBTAG00000002108) ##20	ENSBTAG00000048394	TAF1B (ENSBTAG00000007543) #21	GRHL1 (ENSBTAG00000007485) #22	KLF11 (ENSBTAG00000046218) #23	CYS1 (ENSBTAG00000052669) #25	RRM2 (ENSBTAG00000008216) #26	HPCAL1 (ENSBTAG00000004259) #27	ODC1 (ENSBTAG00000004256) #28	NOL10 (ENSBTAG00000002716) #29	ATP6V1C2 (ENSBTAG00000001927) #30	PDIA6 (ENSBTAG00000001928) #31	KCNF1 (ENSBTAG00000021283) #32	C11H2orf50 (ENSBTAG00000001903) #33	SLC66A3 (ENSBTAG00000020297) #34	ENSBTAG00000048065	ROCK2 (ENSBTAG00000005847) #35	E2F6 (ENSBTAG00000048286) #36	GREB1 (ENSBTAG00000015402) #37
Hybrid Bos Indicus	MODERN SPECIES	2	SOX11 (ENSBIXG00005020448) #7	CMPK2 (ENSBIXG00005003470) #8	RSAD2 (ENSBIXG00005020552) #9	RNF144A (ENSBIXG00005020588) #10	ID2 (ENSBIXG00005020723) #11	KIDINS220 (ENSBIXG00005021201) #12	MBOAT2 (ENSBIXG00005021383) #13	ASAP2 (ENSBIXG00005021521) #14	ITGB1BP1 (ENSBIXG00005021598) #16	CPSF3 (ENSBIXG00005003653) #17	IAH1 (ENSBIXG00005021763) #18	ADAM17 (ENSBIXG00005002613) #19	YWHAQ (ENSBIXG00005021830) #20	ENSBIXG00005021842	TAF1B (ENSBIXG00005021864) #21	GRHL1 (ENSBIXG00005003698) #22	KLF11 (ENSBIXG00005021989) #23	ENSBIXG00005003712 #25	RRM2 (ENSBIXG00005022029) #26	HPCAL1 (ENSBIXG00005006887) #27	ENSBIXG00005022099 #28	NOL10 (ENSBIXG00005022242) #29	ENSBIXG00005022288	ENSBIXG00005007375 #30	ENSBIXG00005007689 #31	KCNF1 (ENSBIXG00005022457) #32	C2orf50 (ENSBIXG00005022500) #33	SLC66A3 (ENSBIXG00005022531) #34	ENSBIXG00005022563	ROCK2 (ENSBIXG00005022677) #35	ENSBIXG00005022696
American bison	MODERN SPECIES	3221	ENSBBBG00000012270	RSAD2 (ENSBBBG00000012264) #9	RNF144A (ENSBBBG00000007447) #10	ID2 (ENSBBBG00000012256) #11	KIDINS220 (ENSBBBG00000012237) #12	ENSBBBG00000012162	MBOAT2 (ENSBBBG00000012157) #13	ASAP2 (ENSBBBG00000012138) #14	ENSBBBG00000012059	ITGB1BP1 (ENSBBBG00000012050) #16	CPSF3 (ENSBBBG00000012019) #17	IAH1 (ENSBBBG00000008101) #18	ADAM17 (ENSBBBG00000002244) #19	YWHAQ (ENSBBBG00000011974) #20	TAF1B (ENSBBBG00000011961) #21	GRHL1 (ENSBBBG00000011949) #22	KLF11 (ENSBBBG00000011923) #23	RRM2 (ENSBBBG00000011911) #26	HPCAL1 (ENSBBBG00000007122) #27	ODC1 (ENSBBBG00000011893) #28	NOL10 (ENSBBBG00000002209) #29	ATP6V1C2 (ENSBBBG00000011779) #30	ENSBBBG00000011729 #31	ENSBBBG00000011712	KCNF1 (ENSBBBG00000002161) #32	C2orf50 (ENSBBBG00000011703) #33	SLC66A3 (ENSBBBG00000011693) #34	ROCK2 (ENSBBBG00000011669) #35	ENSBBBG00000011612	E2F6 (ENSBBBG00000011607) #36	GREB1 (ENSBBBG00000011590) #37
Siberian musk deer	MODERN SPECIES	238	ENSMMSG00000003765	ENSMMSG00000003776	CMPK2 (ENSMMSG00000003809) #8	RSAD2 (ENSMMSG00000003822) #9	RNF144A (ENSMMSG00000003832) #10	ID2 (ENSMMSG00000003856) #11	KIDINS220 (ENSMMSG00000003882) #12	MBOAT2 (ENSMMSG00000003927) #13	ASAP2 (ENSMMSG00000000274) #14	ENSMMSG00000000578 #16	CPSF3 (ENSMMSG00000000621) #17	ENSMMSG00000000723 #18	ADAM17 (ENSMMSG00000000759) #19	YWHAQ (ENSMMSG00000000770) #20	TAF1B (ENSMMSG00000000824) #21	GRHL1 (ENSMMSG00000000910) #22	KLF11 (ENSMMSG00000001004) #23	CYS1 (ENSMMSG00000001021) #25	ENSMMSG00000001037 #26	HPCAL1 (ENSMMSG00000001078) #27	ENSMMSG00000001108 #28	NOL10 (ENSMMSG00000001168) #29	ATP6V1C2 (ENSMMSG00000001335) #30	ENSMMSG00000001405	PDIA6 (ENSMMSG00000001421) #31	KCNF1 (ENSMMSG00000001477) #32	C2orf50 (ENSMMSG00000001487) #33	SLC66A3 (ENSMMSG00000001508) #34	ROCK2 (ENSMMSG00000001542) #35	E2F6 (ENSMMSG00000001567) #36	GREB1 (ENSMMSG00000001601) #37
Cetacea	ANCESTRAL SPECIES	16	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990.k #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a.db.b #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00940000168548	ENSGT00390000008041.C #37
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES	4	CMPK2 (ENSBMSG00010019458) #8	RSAD2 (ENSBMSG00010019426) #9	RNF144A (ENSBMSG00010019394) #10	ID2 (ENSBMSG00010019337) #11	KIDINS220 (ENSBMSG00010019274) #12	MBOAT2 (ENSBMSG00010019136) #13	ASAP2 (ENSBMSG00010019066) #14	ENSBMSG00010019013 #16	CPSF3 (ENSBMSG00010018925) #17	ENSBMSG00010018884 #18	ADAM17 (ENSBMSG00010018804) #19	YWHAQ (ENSBMSG00010018734) #20	ENSBMSG00010018704	TAF1B (ENSBMSG00010018671) #21	ENSBMSG00010018631 #22	ENSBMSG00010018599 #22	KLF11 (ENSBMSG00010018472) #23	CYS1 (ENSBMSG00010018428) #25	RRM2 (ENSBMSG00010018407) #26	ENSBMSG00010018397	HPCAL1 (ENSBMSG00010018376) #27	ENSBMSG00010018302 #28	NOL10 (ENSBMSG00010018130) #29	ATP6V1C2 (ENSBMSG00010017714) #30	PDIA6 (ENSBMSG00010017505) #31	KCNF1 (ENSBMSG00010017441) #32	C2orf50 (ENSBMSG00010017406) #33	SLC66A3 (ENSBMSG00010017158) #34	ENSBMSG00010017126	ROCK2 (ENSBMSG00010016865) #35	E2F6 (ENSBMSG00010016797) #36
Blue whale	MODERN SPECIES	4	DCDC2C (ENSBMSG00010019611)	CMPK2 (ENSBMSG00010019458) #8	RSAD2 (ENSBMSG00010019426) #9	RNF144A (ENSBMSG00010019394) #10	ID2 (ENSBMSG00010019337) #11	KIDINS220 (ENSBMSG00010019274) #12	MBOAT2 (ENSBMSG00010019136) #13	ASAP2 (ENSBMSG00010019066) #14	ENSBMSG00010019013 #16	CPSF3 (ENSBMSG00010018925) #17	ENSBMSG00010018884 #18	ADAM17 (ENSBMSG00010018804) #19	YWHAQ (ENSBMSG00010018734) #20	ENSBMSG00010018704	TAF1B (ENSBMSG00010018671) #21	ENSBMSG00010018631 #22	ENSBMSG00010018599 #22	KLF11 (ENSBMSG00010018472) #23	CYS1 (ENSBMSG00010018428) #25	RRM2 (ENSBMSG00010018407) #26	ENSBMSG00010018397	HPCAL1 (ENSBMSG00010018376) #27	ENSBMSG00010018302 #28	NOL10 (ENSBMSG00010018130) #29	ATP6V1C2 (ENSBMSG00010017714) #30	PDIA6 (ENSBMSG00010017505) #31	KCNF1 (ENSBMSG00010017441) #32	C2orf50 (ENSBMSG00010017406) #33	SLC66A3 (ENSBMSG00010017158) #34	ENSBMSG00010017126	ROCK2 (ENSBMSG00010016865) #35
Odontoceti	ANCESTRAL SPECIES	15	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990.k #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a.db.b #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00940000168548	ENSGT00390000008041.C.f #37	ENSGT01100000263518.A.a.a.b
Odontoceti_a	ANCESTRAL SPECIES	12	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990.k #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a.db.b #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00940000168548	ENSGT00390000008041.C.f #37	ENSGT01100000263518.A.a.a.b
Odontoceti_b	ANCESTRAL SPECIES	15	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990.k #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a.db.b #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00940000168548	ENSGT00390000008041.C.f #37	ENSGT01100000263518.A.a.a.b
Monodontidae	ANCESTRAL SPECIES	13	ENSGT00390000014122.i.b.a.b	ENSGT00940000159468	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990.k #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845 #25	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a.db.b #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00940000168548	ENSGT00390000008041.C.f #37	ENSGT01100000263518.A.a.a.b
Beluga whale	MODERN SPECIES	37			ENSDLEG00000004773	RNF144A (ENSDLEG00000004760) #10	ID2 (ENSDLEG00000004751) #11	KIDINS220 (ENSDLEG00000004637) #12	MBOAT2 (ENSDLEG00000004585) #13	ASAP2 (ENSDLEG00000004523) #14	ITGB1BP1 (ENSDLEG00000004511) #16	CPSF3 (ENSDLEG00000004493) #17	IAH1 (ENSDLEG00000004484) #18	ENSDLEG00000004471	ADAM17 (ENSDLEG00000004858) #19	YWHAQ (ENSDLEG00000004846) #20	TAF1B (ENSDLEG00000004806) #21	GRHL1 (ENSDLEG00000004790) #22	KLF11 (ENSDLEG00000004778) #23	CYS1 (ENSDLEG00000004756) #25	ENSDLEG00000004724 #26	HPCAL1 (ENSDLEG00000004713) #27	ODC1 (ENSDLEG00000004685) #28	NOL10 (ENSDLEG00000004668) #29	ATP6V1C2 (ENSDLEG00000004632) #30	PDIA6 (ENSDLEG00000004606) #31	KCNF1 (ENSDLEG00000004602) #32	PQLC3 (ENSDLEG00000004589) #34	ENSDLEG00000004566 #35	ENSDLEG00000004551	ENSDLEG00000004536 #35	E2F6 (ENSDLEG00000004522) #36	GREB1 (ENSDLEG00000004506) #37
Narwhal	MODERN SPECIES	305	ENSMMNG00015008005	COLEC11 (ENSMMNG00015007976)	ENSMMNG00015007954	SOX11 (ENSMMNG00015007940) #7	RNF144A (ENSMMNG00015007925) #10	ID2 (ENSMMNG00015007903) #11	KIDINS220 (ENSMMNG00015007796) #12	MBOAT2 (ENSMMNG00015007697) #13	ASAP2 (ENSMMNG00015007585) #14	ITGB1BP1 (ENSMMNG00015007476) #16	CPSF3 (ENSMMNG00015007400) #17	IAH1 (ENSMMNG00015007332) #18	ADAM17 (ENSMMNG00015007247) #19	YWHAQ (ENSMMNG00015007193) #20	TAF1B (ENSMMNG00015007142) #21	GRHL1 (ENSMMNG00015007097) #22	KLF11 (ENSMMNG00015007075) #23	CYS1 (ENSMMNG00015007058) #25	ENSMMNG00015007031 #26	HPCAL1 (ENSMMNG00015007009) #27	ENSMMNG00015006983 #28	NOL10 (ENSMMNG00015006937) #29	ATP6V1C2 (ENSMMNG00015006876) #30	PDIA6 (ENSMMNG00015006773) #31	KCNF1 (ENSMMNG00015006742) #32	SLC66A3 (ENSMMNG00015006697) #34	ENSMMNG00015006662	ROCK2 (ENSMMNG00015006633) #35	E2F6 (ENSMMNG00015006595) #36	ENSMMNG00015006580	GREB1 (ENSMMNG00015006496) #37
Vaquita	MODERN SPECIES	4	DCDC2C (ENSPSNG00000022437)	SOX11 (ENSPSNG00000022450) #7	CMPK2 (ENSPSNG00000022458) #8	RSAD2 (ENSPSNG00000022461) #9	RNF144A (ENSPSNG00000022468) #10	ID2 (ENSPSNG00000022474) #11	KIDINS220 (ENSPSNG00000022485) #12	MBOAT2 (ENSPSNG00000022501) #13	ASAP2 (ENSPSNG00000022513) #14	ENSPSNG00000022534 #16	CPSF3 (ENSPSNG00000022538) #17	IAH1 (ENSPSNG00000022542) #18	ADAM17 (ENSPSNG00000022548) #19	YWHAQ (ENSPSNG00000022551) #20	TAF1B (ENSPSNG00000022554) #21	GRHL1 (ENSPSNG00000022556) #22	KLF11 (ENSPSNG00000022558) #23	CYS1 (ENSPSNG00000022560) #25	ENSPSNG00000022562 #26	HPCAL1 (ENSPSNG00000022565) #27	ENSPSNG00000022567 #28	NOL10 (ENSPSNG00000022572) #29	ATP6V1C2 (ENSPSNG00000022577) #30	PDIA6 (ENSPSNG00000022580) #31	KCNF1 (ENSPSNG00000022584) #32	SLC66A3 (ENSPSNG00000004284) #34	ROCK2 (ENSPSNG00000004347) #35	E2F6 (ENSPSNG00000004405) #36	ENSPSNG00000004435	ENSPSNG00000004458 #37	NTSR2 (ENSPSNG00000004561)
Dolphin	MODERN SPECIES	3560															TAF1B (ENSTTRG00000017200) #21	GRHL1 (ENSTTRG00000017204) #22	KLF11 (ENSTTRG00000017207) #23	RRM2 (ENSTTRG00000017209) #26
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	1230																ENSPCTG00005010744 #22
Sperm whale	MODERN SPECIES	3	ENSPCTG00005010966	CMPK2 (ENSPCTG00005011012) #8	RSAD2 (ENSPCTG00005011072) #9	RNF144A (ENSPCTG00005011143) #10	KIDINS220 (ENSPCTG00005011195) #12	MBOAT2 (ENSPCTG00005011265) #13	ASAP2 (ENSPCTG00005011387) #14	ENSPCTG00005011590	ENSPCTG00005011637 #16	CPSF3 (ENSPCTG00005011872) #17	IAH1 (ENSPCTG00005012450) #18	ADAM17 (ENSPCTG00005012570) #19	ENSPCTG00005012664	YWHAQ (ENSPCTG00005012710) #20	TAF1B (ENSPCTG00005012791) #21	ENSPCTG00005012849 #22	RRM2 (ENSPCTG00005012888) #26	HPCAL1 (ENSPCTG00005012942) #27	ODC1 (ENSPCTG00005012986) #28	NOL10 (ENSPCTG00005013060) #29	ATP6V1C2 (ENSPCTG00005013317) #30	PDIA6 (ENSPCTG00005013450) #31	KCNF1 (ENSPCTG00005013707) #32	PQLC3 (ENSPCTG00005013870) #34	ROCK2 (ENSPCTG00005014000) #35	ENSPCTG00005014060	ENSPCTG00005014135 #37	ENSPCTG00005014216	LRATD1 (ENSPCTG00005014256)	NBAS (ENSPCTG00005014284)	DDX1 (ENSPCTG00005014405)
Atlantogenata	ANCESTRAL SPECIES	14	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT01050000247847	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000169919
Xenarthra	ANCESTRAL SPECIES	395							ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23
Sloth	MODERN SPECIES	2299																GRHL1 (ENSCHOG00000011698) #22
Armadillo	MODERN SPECIES	1449				ENSDNOG00000042784	ID2 (ENSDNOG00000035918) #11	KIDINS220 (ENSDNOG00000002905) #12	MBOAT2 (ENSDNOG00000041557) #13	ENSDNOG00000041786	ASAP2 (ENSDNOG00000008886) #14	ITGB1BP1 (ENSDNOG00000008930) #16	CPSF3 (ENSDNOG00000008940) #17	IAH1 (ENSDNOG00000009272) #18	ADAM17 (ENSDNOG00000009284) #19	ENSDNOG00000033666	TAF1B (ENSDNOG00000018268) #21	GRHL1 (ENSDNOG00000014493) #22	KLF11 (ENSDNOG00000035689) #23	ENSDNOG00000047738	ENSDNOG00000012581
Afrotheria	ANCESTRAL SPECIES	26	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT01050000247847	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000169919
Tenrec	MODERN SPECIES	1665															TAF1B (ENSETEG00000003853) #21	ENSETEG00000003860 #22
Afrotheria_a	ANCESTRAL SPECIES	26	ENSGT00390000001793	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT01050000247847	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000169919
Elephant	MODERN SPECIES	197	ENSLAFG00000026156	SOX11 (ENSLAFG00000006327) #7	CMPK2 (ENSLAFG00000031856) #8	RSAD2 (ENSLAFG00000017097) #9	RNF144A (ENSLAFG00000001936) #10	ID2 (ENSLAFG00000006910) #11	KIDINS220 (ENSLAFG00000014141) #12	MBOAT2 (ENSLAFG00000008586) #13	ASAP2 (ENSLAFG00000009029) #14	ITGB1BP1 (ENSLAFG00000009036) #16	CPSF3 (ENSLAFG00000009467) #17	IAH1 (ENSLAFG00000009469) #18	ADAM17 (ENSLAFG00000009473) #19	YWHAQ (ENSLAFG00000009482) #20	TAF1B (ENSLAFG00000000782) #21	GRHL1 (ENSLAFG00000009330) #22	KLF11 (ENSLAFG00000032182) #23	ENSLAFG00000026037	RRM2 (ENSLAFG00000003627) #26	HPCAL1 (ENSLAFG00000004069) #27	ODC1 (ENSLAFG00000005330) #28	NOL10 (ENSLAFG00000010489) #29	ATP6V1C2 (ENSLAFG00000022630) #30	PDIA6 (ENSLAFG00000012281) #31	KCNF1 (ENSLAFG00000008774) #32	ENSLAFG00000026811	C2orf50 (ENSLAFG00000026090) #33	SLC66A3 (ENSLAFG00000025769) #34	ROCK2 (ENSLAFG00000007153) #35	E2F6 (ENSLAFG00000021573) #36	GREB1 (ENSLAFG00000003341) #37
Hyrax	MODERN SPECIES	2437																GRHL1 (ENSPCAG00000003620) #22
Marsupialia	ANCESTRAL SPECIES	15	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b.n #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT01090000260045.C.e.a.a.a.b.b.b.a	ENSGT01090000260024.A.a.b.a.b.a.a.a.b.a.a.a	ENSGT01090000260024.A.a.b.a.b.a.a.a.b.a.b	ENSGT01090000260024.A.a.b.a.b.a.a.a.b.b	ENSGT00390000005410	ENSGT00940000155218.B	ENSGT00390000009212
Marsupialia_b	ANCESTRAL SPECIES	9	ENSGT00390000001793	ENSGT00940000162396	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b.n #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT01090000259995.a.b.c.a	ENSGT01090000259995.a.b.c.b	ENSGT01090000260045.C.e.a.a.a.b.b.b.a	ENSGT01090000260024.A.a.b.a.b.a.a.a.b.a.a.a	ENSGT01090000260024.A.a.b.a.b.a.a.a.b.a.b	ENSGT01090000260024.A.a.b.a.b.a.a.a.b.b	ENSGT00390000005410
Diprotodontia	ANCESTRAL SPECIES	2	ENSGT00940000159468	ENSGT00390000001793	ENSGT00940000162396	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b.n #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT01090000259995.a.b.c.b	ENSGT01090000260045.C.e.a.a.a.b.b.b.a	ENSGT01090000260024.A.a.b.a.b.a.a.a.b.a.a.a	ENSGT01090000260024.A.a.b.a.b.a.a.a.b.a.b	ENSGT01090000260024.A.a.b.a.b.a.a.a.b.b	ENSGT00390000005410	ENSGT00940000155218.B
Diprotodontia_a	ANCESTRAL SPECIES	2	ENSGT00940000159468	ENSGT00390000001793	ENSGT00940000162396	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b.n #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT01090000259995.a.b.c.b	ENSGT01090000260045.C.e.a.a.a.b.b.b.a	ENSGT01090000260024.A.a.b.a.b.a.a.a.b.a.a.a	ENSGT01090000260024.A.a.b.a.b.a.a.a.b.a.b	ENSGT01090000260024.A.a.b.a.b.a.a.a.b.b	ENSGT00390000006293.y	ENSGT00390000005410
Common wonbat	MODERN SPECIES	574												CPSF3 (ENSVURG00010015934) #17	IAH1 (ENSVURG00010015962) #18	ADAM17 (ENSVURG00010015976) #19	YWHAQ (ENSVURG00010015992) #20	GRHL1 (ENSVURG00010016002) #22	KLF11 (ENSVURG00010016043) #23	RRM2 (ENSVURG00010016049) #26	HPCAL1 (ENSVURG00010016057) #27	ODC1 (ENSVURG00010016071) #28	NOL10 (ENSVURG00010016087) #29	ENSVURG00010016104 #30	PDIA6 (ENSVURG00010016129) #31	KCNF1 (ENSVURG00010016135) #32	ENSVURG00010016144	ENSVURG00010016148	ENSVURG00010016160	ENSVURG00010016174	ENSVURG00010016175	ENSVURG00010016181	ENSVURG00010016187
koala	MODERN SPECIES	47	ENSPCIG00000001705	CMPK2 (ENSPCIG00000014961) #8	RSAD2 (ENSPCIG00000014960) #9	RNF144A (ENSPCIG00000009611) #10	ENSPCIG00000014602	ENSPCIG00000014608	ID2 (ENSPCIG00000014613) #11	KIDINS220 (ENSPCIG00000014624) #12	MBOAT2 (ENSPCIG00000014636) #13	ASAP2 (ENSPCIG00000014642) #14	ITGB1BP1 (ENSPCIG00000031637) #16	CPSF3 (ENSPCIG00000009823) #17	IAH1 (ENSPCIG00000009821) #18	ADAM17 (ENSPCIG00000009820) #19	YWHAQ (ENSPCIG00000022985) #20	GRHL1 (ENSPCIG00000009811) #22	ENSPCIG00000009814	KLF11 (ENSPCIG00000009805) #23	RRM2 (ENSPCIG00000009801) #26	HPCAL1 (ENSPCIG00000028410) #27	ODC1 (ENSPCIG00000028406) #28	NOL10 (ENSPCIG00000022730) #29	ENSPCIG00000022723 #30	PDIA6 (ENSPCIG00000022719) #31	KCNF1 (ENSPCIG00000022717) #32	ENSPCIG00000037026	ENSPCIG00000031028	ENSPCIG00000022654	ENSPCIG00000022638	ENSPCIG00000022636	ENSPCIG00000031065
Wallaby	MODERN SPECIES	2464																GRHL1 (ENSMEUG00000007931) #22
Tasmanian devil	MODERN SPECIES	1	ALLC (ENSSHAG00000012095)	ENSSHAG00000011050	CMPK2 (ENSSHAG00000020558) #8	RSAD2 (ENSSHAG00000028215) #9	RNF144A (ENSSHAG00000007808) #10	ID2 (ENSSHAG00000024722) #11	KIDINS220 (ENSSHAG00000013088) #12	MBOAT2 (ENSSHAG00000012144) #13	ASAP2 (ENSSHAG00000008132) #14	ITGB1BP1 (ENSSHAG00000007675) #16	CPSF3 (ENSSHAG00000007024) #17	IAH1 (ENSSHAG00000006790) #18	ADAM17 (ENSSHAG00000006354) #19	YWHAQ (ENSSHAG00000027258) #20	TAF1B (ENSSHAG00000001155) #21	GRHL1 (ENSSHAG00000002291) #22	ENSSHAG00000005846 #23	ENSSHAG00000026867	ENSSHAG00000009991	CAPN14 (ENSSHAG00000012346)	EHD3 (ENSSHAG00000025583)	XDH (ENSSHAG00000013713)	ENSSHAG00000020888	ENSSHAG00000028280	SRD5A2 (ENSSHAG00000030408)	MEMO1 (ENSSHAG00000028323)	SPAST (ENSSHAG00000006946)	SLC30A6 (ENSSHAG00000002690)	YIPF4 (ENSSHAG00000000345)	BIRC6 (ENSSHAG00000005067)	TTC27 (ENSSHAG00000008140)
Opossum	MODERN SPECIES		RSAD2 (ENSMODG00000042627) #9	RNF144A (ENSMODG00000014586) #10	ENSMODG00000017695	ID2 (ENSMODG00000014618) #11	ENSMODG00000048947	KIDINS220 (ENSMODG00000014660) #12	MBOAT2 (ENSMODG00000014667) #13	ASAP2 (ENSMODG00000014685) #14	ITGB1BP1 (ENSMODG00000014691) #16	ENSMODG00000038673	CPSF3 (ENSMODG00000014703) #17	IAH1 (ENSMODG00000045560) #18	ADAM17 (ENSMODG00000014726) #19	ENSMODG00000014740 #20	TAF1B (ENSMODG00000014747) #21	GRHL1 (ENSMODG00000014753) #22	KLF11 (ENSMODG00000014758) #23	ENSMODG00000014763 #26	ENSMODG00000040102	HPCAL1 (ENSMODG00000014770) #27	ENSMODG00000014779 #28	NOL10 (ENSMODG00000014784) #29	ENSMODG00000014803 #30	PDIA6 (ENSMODG00000014811) #31	ENSMODG00000044983	KCNF1 (ENSMODG00000014817) #32	ENSMODG00000039931	ENSMODG00000042906	ENSMODG00000041844	ENSMODG00000050070	ENSMODG00000045149
Platypus	MODERN SPECIES	84	ENSOANG00000013479	CSNK1A1 (ENSOANG00000002863)	ARHGEF37 (ENSOANG00000039639)	PPARGC1B (ENSOANG00000009368)	PDE6A (ENSOANG00000009367)	SLC26A2 (ENSOANG00000037790)	HTR4 (ENSOANG00000009365)	FBXO38 (ENSOANG00000009363)	ENSOANG00000021422	ENSOANG00000037332	PPP2R2B (ENSOANG00000021421)	GPR151 (ENSOANG00000006850)	TCERG1 (ENSOANG00000006849)	YWHAQ (ENSOANG00000007786) #20	ENSOANG00000007787 #21	GRHL1 (ENSOANG00000007788) #22	KLF11 (ENSOANG00000007790) #23	MRPS16 (ENSOANG00000042831)	FBXW11 (ENSOANG00000007791)	FGF18 (ENSOANG00000037529)	NPM1 (ENSOANG00000007792)	TLX3 (ENSOANG00000044828)	RANBP17 (ENSOANG00000007795)	ENSOANG00000007798	GABRP (ENSOANG00000007799)	KCNIP1 (ENSOANG00000007800)	KCNMB1 (ENSOANG00000007801)	ENSOANG00000007802	FOXI1 (ENSOANG00000047041)	DOCK2 (ENSOANG00000021418)	INSYN2B (ENSOANG00000007807)
Sauria	ANCESTRAL SPECIES	1	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT01050000247847	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000157219
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT01050000247847	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000157219
Archosauria	ANCESTRAL SPECIES	3	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000157219	ENSGT00950000182986.a.b.a
Aves	ANCESTRAL SPECIES	10	ENSGT00940000161652 #7	ENSGT00990000204270	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000157219	ENSGT00950000182986.a.b.a
Neognathae	ANCESTRAL SPECIES	2	ENSGT00940000161652 #7	ENSGT00990000204270	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000157219	ENSGT00950000182986.a.b.a
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00940000161652 #7	ENSGT00990000204270	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000157219	ENSGT00950000182986.a.b.a
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00940000161652 #7	ENSGT00990000204270	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000157219	ENSGT00950000182986.a.b.a	ENSGT00940000161165
Passeriformes_d	DUPLICATION
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00940000157612.o #22
Passeriformes_g	ANCESTRAL SPECIES	1	ENSGT00940000161652 #7	ENSGT00990000204270	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612.p #22	ENSGT00940000157612.o #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000153916.B #34	ENSGT00990000205825	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000157219	ENSGT00950000182986.a.b.a
Passeroidea	ANCESTRAL SPECIES		ENSGT00940000159468	ENSGT00940000161652 #7	ENSGT00990000204270	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612.o #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000153916.B #34	ENSGT00990000205825	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000157219	ENSGT00950000182986.a.b.a
Zebra finch	MODERN SPECIES	23	COLEC11 (ENSTGUG00000022930)	SOX11 (ENSTGUG00000012987) #7	ENSTGUG00000022230	RSAD2 (ENSTGUG00000012992) #9	RNF144A (ENSTGUG00000022180) #10	ID2 (ENSTGUG00000012998) #11	KIDINS220 (ENSTGUG00000012999) #12	MBOAT2 (ENSTGUG00000013004) #13	ASAP2 (ENSTGUG00000013006) #14	ITGB1BP1 (ENSTGUG00000013015) #16	CPSF3 (ENSTGUG00000013016) #17	IAH1 (ENSTGUG00000013025) #18	ADAM17 (ENSTGUG00000013028) #19	YWHAQ (ENSTGUG00000013035) #20	TAF1B (ENSTGUG00000013037) #21	GRHL1 (ENSTGUG00000013038) #22	KLF11 (ENSTGUG00000013041) #23	RRM2 (ENSTGUG00000013042) #26	HPCAL1 (ENSTGUG00000013044) #27	ODC1 (ENSTGUG00000013045) #28	NOL10 (ENSTGUG00000013047) #29	ATP6V1C2 (ENSTGUG00000013053) #30	PDIA6 (ENSTGUG00000013056) #31	SLC66A3 (ENSTGUG00000026462) #34	ENSTGUG00000023758	ROCK2 (ENSTGUG00000013067) #35	ENSTGUG00000013076 #36	GREB1 (ENSTGUG00000013081) #37	LPIN1 (ENSTGUG00000013085)	TRIB2 (ENSTGUG00000013089)	LRATD1 (ENSTGUG00000013091)
Medium ground finch	MODERN SPECIES	21	ENSGFOG00000008493	RSAD2 (ENSGFOG00000008473) #9	RNF144A (ENSGFOG00000008461) #10	ID2 (ENSGFOG00000008458) #11	KIDINS220 (ENSGFOG00000008427) #12	MBOAT2 (ENSGFOG00000008417) #13	ASAP2 (ENSGFOG00000008371) #14	ITGB1BP1 (ENSGFOG00000008352) #16	ENSGFOG00000008345 #17	ENSGFOG00000008332 #17	IAH1 (ENSGFOG00000008321) #18	ADAM17 (ENSGFOG00000008025) #19	YWHAQ (ENSGFOG00000007990) #20	TAF1B (ENSGFOG00000007971) #21	ENSGFOG00000007959 #22	ENSGFOG00000007956 #22	KLF11 (ENSGFOG00000007951) #23	RRM2 (ENSGFOG00000007690) #26	HPCAL1 (ENSGFOG00000007664) #27	ODC1 (ENSGFOG00000007655) #28	NOL10 (ENSGFOG00000007627) #29	ATP6V1C2 (ENSGFOG00000007570) #30	PDIA6 (ENSGFOG00000007553) #31	KCNF1 (ENSGFOG00000007549) #32	SLC66A3 (ENSGFOG00000007534) #34	ENSGFOG00000007525	ROCK2 (ENSGFOG00000007498) #35	ENSGFOG00000007490 #36	ENSGFOG00000007488 #36	GREB1 (ENSGFOG00000007462) #37	LPIN1 (ENSGFOG00000005160)
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00940000161652 #7	ENSGT00990000204270	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612.p #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000157219	ENSGT00950000182986.a.b.a	ENSGT00940000161165
Passeriformes_g	ANCESTRAL SPECIES	1	ENSGT00940000159468	ENSGT00940000161652 #7	ENSGT00990000204270	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612.p #22	ENSGT00940000157612.o #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000153916.B #34	ENSGT00990000205825	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000157219
Passeroidea	ANCESTRAL SPECIES																	ENSGT00940000157612.p #22
Common canary	MODERN SPECIES	1	RNASEH1 (ENSSCAG00000012122)	RPS7 (ENSSCAG00000012160)	COLEC11 (ENSSCAG00000012167)	ENSSCAG00000012187	RSAD2 (ENSSCAG00000012190) #9	RNF144A (ENSSCAG00000012205) #10	ID2 (ENSSCAG00000012234) #11	KIDINS220 (ENSSCAG00000012242) #12	MBOAT2 (ENSSCAG00000012256) #13	ASAP2 (ENSSCAG00000012272) #14	ITGB1BP1 (ENSSCAG00000012285) #16	CPSF3 (ENSSCAG00000012290) #17	IAH1 (ENSSCAG00000012295) #18	ADAM17 (ENSSCAG00000012301) #19	YWHAQ (ENSSCAG00000012308) #20	GRHL1 (ENSSCAG00000012341) #22	KLF11 (ENSSCAG00000012362) #23	RRM2 (ENSSCAG00000012371) #26	HPCAL1 (ENSSCAG00000012381) #27	ODC1 (ENSSCAG00000012395) #28	NOL10 (ENSSCAG00000012402) #29	ATP6V1C2 (ENSSCAG00000012422) #30	PDIA6 (ENSSCAG00000012514) #31	KCNF1 (ENSSCAG00000012548) #32	SLC66A3 (ENSSCAG00000012565) #34	ROCK2 (ENSSCAG00000012610) #35	E2F6 (ENSSCAG00000012631) #36	GREB1 (ENSSCAG00000012639) #37	LPIN1 (ENSSCAG00000012667)	TRIB2 (ENSSCAG00000012687)	LRATD1 (ENSSCAG00000012692)
Medium ground finch	MODERN SPECIES	21		ENSGFOG00000008493	RSAD2 (ENSGFOG00000008473) #9	RNF144A (ENSGFOG00000008461) #10	ID2 (ENSGFOG00000008458) #11	KIDINS220 (ENSGFOG00000008427) #12	MBOAT2 (ENSGFOG00000008417) #13	ASAP2 (ENSGFOG00000008371) #14	ITGB1BP1 (ENSGFOG00000008352) #16	ENSGFOG00000008345 #17	ENSGFOG00000008332 #17	IAH1 (ENSGFOG00000008321) #18	ADAM17 (ENSGFOG00000008025) #19	YWHAQ (ENSGFOG00000007990) #20	TAF1B (ENSGFOG00000007971) #21	ENSGFOG00000007959 #22	ENSGFOG00000007956 #22	KLF11 (ENSGFOG00000007951) #23	RRM2 (ENSGFOG00000007690) #26	HPCAL1 (ENSGFOG00000007664) #27	ODC1 (ENSGFOG00000007655) #28	NOL10 (ENSGFOG00000007627) #29	ATP6V1C2 (ENSGFOG00000007570) #30	PDIA6 (ENSGFOG00000007553) #31	KCNF1 (ENSGFOG00000007549) #32	SLC66A3 (ENSGFOG00000007534) #34	ENSGFOG00000007525	ROCK2 (ENSGFOG00000007498) #35	ENSGFOG00000007490 #36	ENSGFOG00000007488 #36	GREB1 (ENSGFOG00000007462) #37
Flycatcher	MODERN SPECIES	21	SOX11 (ENSFALG00000014554) #7	ENSFALG00000025049	CMPK2 (ENSFALG00000023392) #8	RSAD2 (ENSFALG00000006483) #9	RNF144A (ENSFALG00000027037) #10	ID2 (ENSFALG00000006518) #11	KIDINS220 (ENSFALG00000006522) #12	MBOAT2 (ENSFALG00000006544) #13	ASAP2 (ENSFALG00000006556) #14	ITGB1BP1 (ENSFALG00000026175) #16	CPSF3 (ENSFALG00000006572) #17	IAH1 (ENSFALG00000006579) #18	ADAM17 (ENSFALG00000006611) #19	YWHAQ (ENSFALG00000023362) #20	TAF1B (ENSFALG00000006636) #21	GRHL1 (ENSFALG00000006639) #22	KLF11 (ENSFALG00000006648) #23	ENSFALG00000027922	RRM2 (ENSFALG00000022902) #26	HPCAL1 (ENSFALG00000006653) #27	ODC1 (ENSFALG00000006656) #28	NOL10 (ENSFALG00000006658) #29	ATP6V1C2 (ENSFALG00000006666) #30	PDIA6 (ENSFALG00000006683) #31	KCNF1 (ENSFALG00000014627) #32	SLC66A3 (ENSFALG00000024817) #34	ROCK2 (ENSFALG00000006707) #35	ENSFALG00000027375 #36	ENSFALG00000026316 #36	GREB1 (ENSFALG00000006718) #37	LPIN1 (ENSFALG00000006735)
Great tit	MODERN SPECIES	22	COLEC11 (ENSPMJG00000010415)	SOX11 (ENSPMJG00000010517) #7	CMPK2 (ENSPMJG00000010562) #8	RSAD2 (ENSPMJG00000010563) #9	RNF144A (ENSPMJG00000010564) #10	ID2 (ENSPMJG00000010632) #11	KIDINS220 (ENSPMJG00000010635) #12	MBOAT2 (ENSPMJG00000010666) #13	ASAP2 (ENSPMJG00000010679) #14	ITGB1BP1 (ENSPMJG00000012392) #16	CPSF3 (ENSPMJG00000012393) #17	IAH1 (ENSPMJG00000012394) #18	ADAM17 (ENSPMJG00000012400) #19	YWHAQ (ENSPMJG00000012403) #20	TAF1B (ENSPMJG00000012405) #21	GRHL1 (ENSPMJG00000012412) #22	KLF11 (ENSPMJG00000012416) #23	RRM2 (ENSPMJG00000012420) #26	HPCAL1 (ENSPMJG00000012424) #27	ODC1 (ENSPMJG00000012426) #28	NOL10 (ENSPMJG00000012429) #29	ATP6V1C2 (ENSPMJG00000012432) #30	PDIA6 (ENSPMJG00000012436) #31	SLC66A3 (ENSPMJG00000012442) #34	ROCK2 (ENSPMJG00000012447) #35	E2F6 (ENSPMJG00000012450) #36	GREB1 (ENSPMJG00000012451) #37	LPIN1 (ENSPMJG00000012453)	TRIB2 (ENSPMJG00000012455)	LRATD1 (ENSPMJG00000012465)	NBAS (ENSPMJG00000012468)
Neognathae_c	ANCESTRAL SPECIES	10	ENSGT00940000159468	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000157219	ENSGT00950000182986.a.b.a
Kakapo	DUPLICATION
Kakapo	MODERN SPECIES	23	RPS7 (ENSSHBG00005006046)	COLEC11 (ENSSHBG00005006078)	ENSSHBG00005006101	RSAD2 (ENSSHBG00005006118) #9	RNF144A (ENSSHBG00005006232) #10	ID2 (ENSSHBG00005006245) #11	KIDINS220 (ENSSHBG00005006291) #12	MBOAT2 (ENSSHBG00005006345) #13	ASAP2 (ENSSHBG00005006393) #14	ITGB1BP1 (ENSSHBG00005006432) #16	CPSF3 (ENSSHBG00005006481) #17	IAH1 (ENSSHBG00005006527) #18	ADAM17 (ENSSHBG00005006619) #19	YWHAQ (ENSSHBG00005006806) #20	TAF1B (ENSSHBG00005006841) #21	ENSSHBG00005006892 #22	ENSSHBG00005006922 #22	KLF11 (ENSSHBG00005006947) #23	RRM2 (ENSSHBG00005006975) #26	HPCAL1 (ENSSHBG00005007002) #27	ODC1 (ENSSHBG00005007026) #28	NOL10 (ENSSHBG00005007121) #29	ATP6V1C2 (ENSSHBG00005007157) #30	PDIA6 (ENSSHBG00005007211) #31	KCNF1 (ENSSHBG00005007231) #32	C2orf50 (ENSSHBG00005007249) #33	SLC66A3 (ENSSHBG00005007268) #34	ENSSHBG00005007299 #35	ENSSHBG00005007333 #35	E2F6 (ENSSHBG00005007355) #36	GREB1 (ENSSHBG00005007448) #37
Kakapo	MODERN SPECIES	23	COLEC11 (ENSSHBG00005006078)	ENSSHBG00005006101	RSAD2 (ENSSHBG00005006118) #9	RNF144A (ENSSHBG00005006232) #10	ID2 (ENSSHBG00005006245) #11	KIDINS220 (ENSSHBG00005006291) #12	MBOAT2 (ENSSHBG00005006345) #13	ASAP2 (ENSSHBG00005006393) #14	ITGB1BP1 (ENSSHBG00005006432) #16	CPSF3 (ENSSHBG00005006481) #17	IAH1 (ENSSHBG00005006527) #18	ADAM17 (ENSSHBG00005006619) #19	YWHAQ (ENSSHBG00005006806) #20	TAF1B (ENSSHBG00005006841) #21	ENSSHBG00005006892 #22	ENSSHBG00005006922 #22	KLF11 (ENSSHBG00005006947) #23	RRM2 (ENSSHBG00005006975) #26	HPCAL1 (ENSSHBG00005007002) #27	ODC1 (ENSSHBG00005007026) #28	NOL10 (ENSSHBG00005007121) #29	ATP6V1C2 (ENSSHBG00005007157) #30	PDIA6 (ENSSHBG00005007211) #31	KCNF1 (ENSSHBG00005007231) #32	C2orf50 (ENSSHBG00005007249) #33	SLC66A3 (ENSSHBG00005007268) #34	ENSSHBG00005007299 #35	ENSSHBG00005007333 #35	E2F6 (ENSSHBG00005007355) #36	GREB1 (ENSSHBG00005007448) #37	LPIN1 (ENSSHBG00005007857)
Golden eagle	MODERN SPECIES	6	SOX11 (ENSACCG00020004781) #7	CMPK2 (ENSACCG00020004778) #8	RSAD2 (ENSACCG00020004774) #9	RNF144A (ENSACCG00020004762) #10	ENSACCG00020004746	ID2 (ENSACCG00020004736) #11	KIDINS220 (ENSACCG00020014291) #12	MBOAT2 (ENSACCG00020014234) #13	ASAP2 (ENSACCG00020013669) #14	ITGB1BP1 (ENSACCG00020012708) #16	CPSF3 (ENSACCG00020012650) #17	IAH1 (ENSACCG00020012620) #18	ADAM17 (ENSACCG00020012584) #19	YWHAQ (ENSACCG00020012565) #20	TAF1B (ENSACCG00020012536) #21	ENSACCG00020012519 #22	KLF11 (ENSACCG00020012500) #23	RRM2 (ENSACCG00020012338) #26	HPCAL1 (ENSACCG00020012207) #27	ODC1 (ENSACCG00020012187) #28	NOL10 (ENSACCG00020012136) #29	ATP6V1C2 (ENSACCG00020012041) #30	PDIA6 (ENSACCG00020011924) #31	KCNF1 (ENSACCG00020011878) #32	C2orf50 (ENSACCG00020011859) #33	SLC66A3 (ENSACCG00020011809) #34	ROCK2 (ENSACCG00020011682) #35	E2F6 (ENSACCG00020011591) #36	GREB1 (ENSACCG00020011499) #37	LPIN1 (ENSACCG00020011416)	TRIB2 (ENSACCG00020011397)
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00940000159468	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000157219	ENSGT00950000182986.a.b.a
Phasianidae	ANCESTRAL SPECIES	3	ENSGT00940000159468	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734.ab #36	ENSGT00390000008041.C #37	ENSGT00940000157219	ENSGT00950000182986.a.b.a
Japanese quail	MODERN SPECIES	21	COLEC11 (ENSCJPG00005008571)	SOX11 (ENSCJPG00005008603) #7	CMPK2 (ENSCJPG00005008614) #8	RSAD2 (ENSCJPG00005008615) #9	RNF144A (ENSCJPG00005008634) #10	Id2 (ENSCJPG00005008665) #11	KIDINS220 (ENSCJPG00005008683) #12	MBOAT2 (ENSCJPG00005011009) #13	ASAP2 (ENSCJPG00005011015) #14	ITGB1BP1 (ENSCJPG00005011017) #16	CPSF3 (ENSCJPG00005011027) #17	IAH1 (ENSCJPG00005011028) #18	ADAM17 (ENSCJPG00005011030) #19	YWHAQ (ENSCJPG00005011031) #20	TAF1B (ENSCJPG00005011032) #21	GRHL1 (ENSCJPG00005011034) #22	KLF11 (ENSCJPG00005011036) #23	ENSCJPG00005011037	RRM2 (ENSCJPG00005011038) #26	HPCAL1 (ENSCJPG00005011043) #27	ODC1 (ENSCJPG00005011044) #28	NOL10 (ENSCJPG00005011045) #29	ATP6V1C2 (ENSCJPG00005011046) #30	PDIA6 (ENSCJPG00005011047) #31	KCNF1 (ENSCJPG00005011049) #32	C2orf50 (ENSCJPG00005011052) #33	SLC66A3 (ENSCJPG00005011053) #34	ROCK2 (ENSCJPG00005011054) #35	E2F6 (ENSCJPG00005011055) #36	ENSCJPG00005011056	GREB1 (ENSCJPG00005011057) #37
Phasianidae_b	ANCESTRAL SPECIES	2	ENSGT00940000159468	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734.ab #36	ENSGT00390000008041.C #37	ENSGT00940000157219	ENSGT00950000182986.a.b.a
Turkey	DUPLICATION
Turkey	MODERN SPECIES	11	ENSMGAG00000020485 #36	ENSMGAG00000014018 #36	ENSMGAG00000014017 #35	ENSMGAG00000019027 #34	ENSMGAG00000018364 #33	ENSMGAG00000015960 #32	ENSMGAG00000014013 #30	ENSMGAG00000014014 #31	ENSMGAG00000014012 #29	ENSMGAG00000020117 #29	ENSMGAG00000014011 #28	ENSMGAG00000014010 #27	ENSMGAG00000014009 #26	ENSMGAG00000014008 #23	ENSMGAG00000017891 #22	ENSMGAG00000014007 #22	TAF1B (ENSMGAG00000014006) #21	ENSMGAG00000018898 ##20	ENSMGAG00000014000 #19	ENSMGAG00000014004 #20	CPSF3 (ENSMGAG00000013995) #17	ENSMGAG00000013988 #14	ENSMGAG00000013993 #16	ENSMGAG00000017593	ID2 (ENSMGAG00000013985) #11	ENSMGAG00000013984 #10	ENSMGAG00000019604 #9	ENSMGAG00000013982 #8	ENSMGAG00000019338 #7	ENSMGAG00000013980	RPS7 (ENSMGAG00000013978)
Turkey	MODERN SPECIES	11	ENSMGAG00000017517 #37	ENSMGAG00000020485 #36	ENSMGAG00000014018 #36	ENSMGAG00000014017 #35	ENSMGAG00000019027 #34	ENSMGAG00000018364 #33	ENSMGAG00000015960 #32	ENSMGAG00000014013 #30	ENSMGAG00000014014 #31	ENSMGAG00000014012 #29	ENSMGAG00000020117 #29	ENSMGAG00000014011 #28	ENSMGAG00000014010 #27	ENSMGAG00000014009 #26	ENSMGAG00000014008 #23	ENSMGAG00000017891 #22	ENSMGAG00000014007 #22	TAF1B (ENSMGAG00000014006) #21	ENSMGAG00000018898 ##20	ENSMGAG00000014000 #19	ENSMGAG00000014004 #20	CPSF3 (ENSMGAG00000013995) #17	ENSMGAG00000013988 #14	ENSMGAG00000013993 #16	ENSMGAG00000017593	ID2 (ENSMGAG00000013985) #11	ENSMGAG00000013984 #10	ENSMGAG00000019604 #9	ENSMGAG00000013982 #8	ENSMGAG00000019338 #7	ENSMGAG00000013980
Chicken	MODERN SPECIES	22	CMPK2 (ENSGALG00010002380) #8	RSAD2 (ENSGALG00010003583) #9	RNF144A (ENSGALG00010003597) #10	ENSGALG00010003853	ID2 (ENSGALG00010003117) #11	KIDINS220 (ENSGALG00010003160) #12	MBOAT2 (ENSGALG00010003201) #13	ASAP2 (ENSGALG00010003242) #14	ENSGALG00010003244	ITGB1BP1 (ENSGALG00010003253) #16	CPSF3 (ENSGALG00010003272) #17	IAH1 (ENSGALG00010003295) #18	ADAM17 (ENSGALG00010003348) #19	YWHAQ (ENSGALG00010003375) #20	TAF1B (ENSGALG00010004230) #21	GRHL1 (ENSGALG00010002433) #22	KLF11 (ENSGALG00010002444) #23	RRM2 (ENSGALG00010002462) #26	HPCAL1 (ENSGALG00010002474) #27	ODC (ENSGALG00010003604) #28	NOL10 (ENSGALG00010003525) #29	ATP6V1C2 (ENSGALG00010002590) #30	PDIA6 (ENSGALG00010002609) #31	KCNF1 (ENSGALG00010002644) #32	C2orf50 (ENSGALG00010002657) #33	SLC66A3 (ENSGALG00010002673) #34	ROCK2 (ENSGALG00010002706) #35	E2F6 (ENSGALG00010002730) #36	GREB1 (ENSGALG00010002758) #37	LPIN1 (ENSGALG00010002832)	TRIB2 (ENSGALG00010002848)
Anatidae	ANCESTRAL SPECIES		ENSGT00940000159468	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623.a #14	ENSGT00390000003990 #16	ENSGT00940000155699.h #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT01000000216411	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000157219
Pink-footed goose	MODERN SPECIES	48	CMPK2 (ENSABRG00000009165) #8	RSAD2 (ENSABRG00000009173) #9	RNF144A (ENSABRG00000009186) #10	ENSABRG00000009192	ENSABRG00000009198	ID2 (ENSABRG00000009225) #11	KIDINS220 (ENSABRG00000009278) #12	MBOAT2 (ENSABRG00000009397) #13	ASAP2 (ENSABRG00000009432) #14	ITGB1BP1 (ENSABRG00000009505) #16	CPSF3 (ENSABRG00000009595) #17	IAH1 (ENSABRG00000010649) #18	ADAM17 (ENSABRG00000010665) #19	YWHAQ (ENSABRG00000010695) #20	TAF1B (ENSABRG00000010705) #21	GRHL1 (ENSABRG00000010717) #22	KLF11 (ENSABRG00000010724) #23	RRM2 (ENSABRG00000010731) #26	HPCAL1 (ENSABRG00000010754) #27	ODC1 (ENSABRG00000010758) #28	NOL10 (ENSABRG00000010777) #29	ATP6V1C2 (ENSABRG00000010781) #30	PDIA6 (ENSABRG00000010799) #31	KCNF1 (ENSABRG00000010814) #32	ENSABRG00000010830	C2orf50 (ENSABRG00000010843) #33	SLC66A3 (ENSABRG00000000216) #34	ROCK2 (ENSABRG00000000240) #35	E2F6 (ENSABRG00000000297) #36	GREB1 (ENSABRG00000000348) #37	LPIN1 (ENSABRG00000000615)
Duck	MODERN SPECIES	21	SOX11 (ENSAPLG00000025127) #7	ENSAPLG00000017954	ENSAPLG00000022011	RSAD2 (ENSAPLG00000006016) #9	RNF144A (ENSAPLG00000006187) #10	ID2 (ENSAPLG00000020880) #11	KIDINS220 (ENSAPLG00000015856) #12	MBOAT2 (ENSAPLG00000015705) #13	ASAP2 (ENSAPLG00000006573) #14	ITGB1BP1 (ENSAPLG00000006929) #16	CPSF3 (ENSAPLG00000006941) #17	IAH1 (ENSAPLG00000007422) #18	ADAM17 (ENSAPLG00000007716) #19	YWHAQ (ENSAPLG00000023697) #20	TAF1B (ENSAPLG00000008537) #21	GRHL1 (ENSAPLG00000008667) #22	KLF11 (ENSAPLG00000009146) #23	ENSAPLG00000030281	RRM2 (ENSAPLG00000009301) #26	ODC1 (ENSAPLG00000009531) #28	NOL10 (ENSAPLG00000009885) #29	ATP6V1C2 (ENSAPLG00000010549) #30	PDIA6 (ENSAPLG00000010864) #31	ENSAPLG00000027989	ENSAPLG00000001506	C2orf50 (ENSAPLG00000011213) #33	SLC66A3 (ENSAPLG00000030742) #34	ROCK2 (ENSAPLG00000011393) #35	E2F6 (ENSAPLG00000012476) #36	GREB1 (ENSAPLG00000014229) #37	LPIN1 (ENSAPLG00000013386)
African ostrich	MODERN SPECIES	928																GRHL1 (ENSSCUG00000017299) #22	ENSSCUG00000017300	KLF11 (ENSSCUG00000017301) #23
Australian saltwater crocodile	MODERN SPECIES	38	CMPK2 (ENSCPRG00005008440) #8	RSAD2 (ENSCPRG00005008433) #9	RNF144A (ENSCPRG00005008430) #10	UBE2F (ENSCPRG00005008370)	ID2 (ENSCPRG00005008324) #11	KIDINS220 (ENSCPRG00005007277) #12	MBOAT2 (ENSCPRG00005007103) #13	ASAP2 (ENSCPRG00005007065) #14	ITGB1BP1 (ENSCPRG00005007062) #16	CPSF3 (ENSCPRG00005007046) #17	IAH1 (ENSCPRG00005007037) #18	ADAM17 (ENSCPRG00005006916) #19	ENSCPRG00005006866 ##20	YWHAQ (ENSCPRG00005006856) #20	TAF1B (ENSCPRG00005006808) #21	GRHL1 (ENSCPRG00005006677) #22	KLF11 (ENSCPRG00005006661) #23	RRM2 (ENSCPRG00005006653) #26	HPCAL1 (ENSCPRG00005006636) #27	ODC1 (ENSCPRG00005006625) #28	NOL10 (ENSCPRG00005006615) #29	ATP6V1C2 (ENSCPRG00005006593) #30	PDIA6 (ENSCPRG00005006586) #31	KCNF1 (ENSCPRG00005006569) #32	C2orf50 (ENSCPRG00005006553) #33	SLC66A3 (ENSCPRG00005006550) #34	ENSCPRG00005006542	ROCK2 (ENSCPRG00005006216) #35	ENSCPRG00005006100 #36	GREB1 (ENSCPRG00005006077) #37	LPIN1 (ENSCPRG00005005996)
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT01050000247847	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000157219
Testudinoidea	ANCESTRAL SPECIES	12	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT01050000247847	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000157219.a
Emydidae	ANCESTRAL SPECIES	8	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT01050000247847	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000157219.a
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	15	ENSTMTG00000001613	SOX11 (ENSTMTG00000001626) #7	CMPK2 (ENSTMTG00000001631) #8	RSAD2 (ENSTMTG00000001639) #9	RNF144A (ENSTMTG00000001652) #10	ID2 (ENSTMTG00000001659) #11	KIDINS220 (ENSTMTG00000001670) #12	MBOAT2 (ENSTMTG00000001696) #13	ASAP2 (ENSTMTG00000001754) #14	ITGB1BP1 (ENSTMTG00000002109) #16	CPSF3 (ENSTMTG00000002118) #17	IAH1 (ENSTMTG00000002139) #18	ADAM17 (ENSTMTG00000002145) #19	YWHAQ (ENSTMTG00000002159) #20	TAF1B (ENSTMTG00000002170) #21	ENSTMTG00000002182 #22	ENSTMTG00000002187 #22	KLF11 (ENSTMTG00000002194) #23	RRM2 (ENSTMTG00000002199) #26	HPCAL1 (ENSTMTG00000002212) #27	ODC1 (ENSTMTG00000002221) #28	NOL10 (ENSTMTG00000002231) #29	ATP6V1C2 (ENSTMTG00000002250) #30	PDIA6 (ENSTMTG00000002306) #31	KCNF1 (ENSTMTG00000002317) #32	C2orf50 (ENSTMTG00000002318) #33	ROCK2 (ENSTMTG00000002325) #35	E2F6 (ENSTMTG00000002335) #36	GREB1 (ENSTMTG00000002344) #37	ENSTMTG00000002372	LPIN1 (ENSTMTG00000002382)
Three-toed box turtle	MODERN SPECIES	15	SOX11 (ENSTMTG00000001626) #7	CMPK2 (ENSTMTG00000001631) #8	RSAD2 (ENSTMTG00000001639) #9	RNF144A (ENSTMTG00000001652) #10	ID2 (ENSTMTG00000001659) #11	KIDINS220 (ENSTMTG00000001670) #12	MBOAT2 (ENSTMTG00000001696) #13	ASAP2 (ENSTMTG00000001754) #14	ITGB1BP1 (ENSTMTG00000002109) #16	CPSF3 (ENSTMTG00000002118) #17	IAH1 (ENSTMTG00000002139) #18	ADAM17 (ENSTMTG00000002145) #19	YWHAQ (ENSTMTG00000002159) #20	TAF1B (ENSTMTG00000002170) #21	ENSTMTG00000002182 #22	ENSTMTG00000002187 #22	KLF11 (ENSTMTG00000002194) #23	RRM2 (ENSTMTG00000002199) #26	HPCAL1 (ENSTMTG00000002212) #27	ODC1 (ENSTMTG00000002221) #28	NOL10 (ENSTMTG00000002231) #29	ATP6V1C2 (ENSTMTG00000002250) #30	PDIA6 (ENSTMTG00000002306) #31	KCNF1 (ENSTMTG00000002317) #32	C2orf50 (ENSTMTG00000002318) #33	ROCK2 (ENSTMTG00000002325) #35	E2F6 (ENSTMTG00000002335) #36	GREB1 (ENSTMTG00000002344) #37	ENSTMTG00000002372	LPIN1 (ENSTMTG00000002382)	TRIB2 (ENSTMTG00000002404)
painted turtle	MODERN SPECIES	2390		SOX11 (ENSCPBG00000014153) #7	CMPK2 (ENSCPBG00000014149) #8	RSAD2 (ENSCPBG00000014146) #9	RNF144A (ENSCPBG00000014144) #10	ID2 (ENSCPBG00000014130) #11	KIDINS220 (ENSCPBG00000014107) #12	MBOAT2 (ENSCPBG00000014088) #13	ASAP2 (ENSCPBG00000014081) #14	ITGB1BP1 (ENSCPBG00000014075) #16	CPSF3 (ENSCPBG00000014074) #17	IAH1 (ENSCPBG00000014070) #18	ADAM17 (ENSCPBG00000014063) #19	YWHAQ (ENSCPBG00000014061) #20	TAF1B (ENSCPBG00000014058) #21	GRHL1 (ENSCPBG00000014054) #22	KLF11 (ENSCPBG00000014051) #23	ENSCPBG00000014048	RRM2 (ENSCPBG00000014047) #26	ATP6V1C2 (ENSCPBG00000014032) #30	PDIA6 (ENSCPBG00000014031) #31	KCNF1 (ENSCPBG00000014030) #32	C2orf50 (ENSCPBG00000014027) #33	SLC66A3 (ENSCPBG00000014025) #34	ROCK2 (ENSCPBG00000014009) #35	E2F6 (ENSCPBG00000014007) #36	GREB1 (ENSCPBG00000014004) #37	LPIN1 (ENSCPBG00000014000)	TRIB2 (ENSCPBG00000013994)	LRATD1 (ENSCPBG00000013990)	NBAS (ENSCPBG00000013977)
Testudinidae	ANCESTRAL SPECIES	10	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000157219.a	ENSGT00950000182986.a.b.a
Goode s thornscrub tortoise	MODERN SPECIES	17	SOX11 (ENSGEVG00005008815) #7	ENSGEVG00005008806	CMPK2 (ENSGEVG00005008784) #8	RSAD2 (ENSGEVG00005008769) #9	RNF144A (ENSGEVG00005008742) #10	ID2 (ENSGEVG00005008728) #11	KIDINS220 (ENSGEVG00005008688) #12	MBOAT2 (ENSGEVG00005008645) #13	ASAP2 (ENSGEVG00005008532) #14	ITGB1BP1 (ENSGEVG00005008492) #16	CPSF3 (ENSGEVG00005008438) #17	IAH1 (ENSGEVG00005008414) #18	ADAM17 (ENSGEVG00005008380) #19	YWHAQ (ENSGEVG00005008366) #20	TAF1B (ENSGEVG00005008345) #21	GRHL1 (ENSGEVG00005008039) #22	KLF11 (ENSGEVG00005007934) #23	RRM2 (ENSGEVG00005007899) #26	HPCAL1 (ENSGEVG00005007881) #27	ODC1 (ENSGEVG00005007862) #28	NOL10 (ENSGEVG00005007769) #29	ATP6V1C2 (ENSGEVG00005007637) #30	PDIA6 (ENSGEVG00005007586) #31	KCNF1 (ENSGEVG00005007578) #32	C2orf50 (ENSGEVG00005007561) #33	SLC66A3 (ENSGEVG00005007519) #34	ROCK2 (ENSGEVG00005007467) #35	E2F6 (ENSGEVG00005007439) #36	GREB1 (ENSGEVG00005007324) #37	LPIN1 (ENSGEVG00005007279)	ENSGEVG00005007261
Abingdon island giant tortoise	MODERN SPECIES	688															TAF1B (ENSCABG00000021394) #21	GRHL1 (ENSCABG00000021392) #22	KLF11 (ENSCABG00000021391) #23	RRM2 (ENSCABG00000021389) #26
Chinese turtle	MODERN SPECIES	1137					RNF144A (ENSPSIG00000004494) #10	ID2 (ENSPSIG00000004438) #11	KIDINS220 (ENSPSIG00000017562) #12	MBOAT2 (ENSPSIG00000017486) #13	ASAP2 (ENSPSIG00000017299) #14	ITGB1BP1 (ENSPSIG00000016662) #16	CPSF3 (ENSPSIG00000016144) #17	IAH1 (ENSPSIG00000015583) #18	ADAM17 (ENSPSIG00000013693) #19	YWHAQ (ENSPSIG00000012692) #20	TAF1B (ENSPSIG00000012081) #21	GRHL1 (ENSPSIG00000010930) #22	KLF11 (ENSPSIG00000010816) #23	RRM2 (ENSPSIG00000009363) #26
Lepidosauria	ANCESTRAL SPECIES		ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000157219	ENSGT00950000182986.a.b.a
Episquamata	ANCESTRAL SPECIES		ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000157219	ENSGT00950000182986.a.b.a
Laterata	ANCESTRAL SPECIES	13	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000157219	ENSGT00950000182986.a.b.a
Argentine black and white tegu	DUPLICATION
Argentine black and white tegu	MODERN SPECIES	9	CMPK2 (ENSSMRG00000006467) #8	RSAD2 (ENSSMRG00000006397) #9	RNF144A (ENSSMRG00000006394) #10	ENSSMRG00000006368	ID2 (ENSSMRG00000006348) #11	KIDINS220 (ENSSMRG00000006306) #12	MBOAT2 (ENSSMRG00000006296) #13	ASAP2 (ENSSMRG00000006275) #14	ITGB1BP1 (ENSSMRG00000006271) #16	CPSF3 (ENSSMRG00000006269) #17	IAH1 (ENSSMRG00000006268) #18	ADAM17 (ENSSMRG00000006231) #19	YWHAQ (ENSSMRG00000006227) #20	TAF1B (ENSSMRG00000006214) #21	ENSSMRG00000006208 #22	ENSSMRG00000006187 #22	KLF11 (ENSSMRG00000006180) #23	RRM2 (ENSSMRG00000006152) #26	HPCAL1 (ENSSMRG00000006133) #27	ODC1 (ENSSMRG00000006061) #28	NOL10 (ENSSMRG00000006057) #29	ATP6V1C2 (ENSSMRG00000006042) #30	PDIA6 (ENSSMRG00000006032) #31	KCNF1 (ENSSMRG00000006005) #32	SLC66A3 (ENSSMRG00000006003) #34	ROCK2 (ENSSMRG00000005998) #35	CPB2 (ENSSMRG00000005966)	ZC3H13 (ENSSMRG00000005959)	DNAJC18 (ENSSMRG00000005952)	ENSSMRG00000005950	ESD (ENSSMRG00000005946)
Argentine black and white tegu	MODERN SPECIES	9	ENSSMRG00000006470	CMPK2 (ENSSMRG00000006467) #8	RSAD2 (ENSSMRG00000006397) #9	RNF144A (ENSSMRG00000006394) #10	ENSSMRG00000006368	ID2 (ENSSMRG00000006348) #11	KIDINS220 (ENSSMRG00000006306) #12	MBOAT2 (ENSSMRG00000006296) #13	ASAP2 (ENSSMRG00000006275) #14	ITGB1BP1 (ENSSMRG00000006271) #16	CPSF3 (ENSSMRG00000006269) #17	IAH1 (ENSSMRG00000006268) #18	ADAM17 (ENSSMRG00000006231) #19	YWHAQ (ENSSMRG00000006227) #20	TAF1B (ENSSMRG00000006214) #21	ENSSMRG00000006208 #22	ENSSMRG00000006187 #22	KLF11 (ENSSMRG00000006180) #23	RRM2 (ENSSMRG00000006152) #26	HPCAL1 (ENSSMRG00000006133) #27	ODC1 (ENSSMRG00000006061) #28	NOL10 (ENSSMRG00000006057) #29	ATP6V1C2 (ENSSMRG00000006042) #30	PDIA6 (ENSSMRG00000006032) #31	KCNF1 (ENSSMRG00000006005) #32	SLC66A3 (ENSSMRG00000006003) #34	ROCK2 (ENSSMRG00000005998) #35	CPB2 (ENSSMRG00000005966)	ZC3H13 (ENSSMRG00000005959)	DNAJC18 (ENSSMRG00000005952)	ENSSMRG00000005950
Common wall lizard	MODERN SPECIES	11	SOX11 (ENSPMRG00000011579) #7	CMPK2 (ENSPMRG00000011581) #8	RSAD2 (ENSPMRG00000011584) #9	RNF144A (ENSPMRG00000011590) #10	ID2 (ENSPMRG00000011594) #11	KIDINS220 (ENSPMRG00000011602) #12	MBOAT2 (ENSPMRG00000011615) #13	ASAP2 (ENSPMRG00000011623) #14	ITGB1BP1 (ENSPMRG00000011647) #16	CPSF3 (ENSPMRG00000011656) #17	IAH1 (ENSPMRG00000011668) #18	ADAM17 (ENSPMRG00000011682) #19	ENSPMRG00000011696 #20	ENSPMRG00000011699	TAF1B (ENSPMRG00000011702) #21	GRHL1 (ENSPMRG00000011712) #22	KLF11 (ENSPMRG00000011727) #23	RRM2 (ENSPMRG00000011731) #26	NOL10 (ENSPMRG00000011740) #29	HPCAL1 (ENSPMRG00000011758) #27	ODC1 (ENSPMRG00000011766) #28	ATP6V1C2 (ENSPMRG00000011774) #30	PDIA6 (ENSPMRG00000011782) #31	KCNF1 (ENSPMRG00000011788) #32	C2orf50 (ENSPMRG00000002369) #33	SLC66A3 (ENSPMRG00000002376) #34	ROCK2 (ENSPMRG00000002407) #35	E2F6 (ENSPMRG00000002524) #36	GREB1 (ENSPMRG00000002546) #37	LPIN1 (ENSPMRG00000002595)	TRIB2 (ENSPMRG00000002631)
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT00940000157219	ENSGT00950000182986.a.b.a
Elapidae	ANCESTRAL SPECIES		ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827.c #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000011297	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT01010000229139	ENSGT00390000008041.C #37
Elapidae_a	ANCESTRAL SPECIES	6	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827.c #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000011297	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT01010000229139	ENSGT00390000008041.C #37
Acanthophiinae	ANCESTRAL SPECIES	8	ENSGT00940000162396	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827.c #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000011297	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT01010000229139	ENSGT00390000008041.C #37
Eastern brown snake	MODERN SPECIES	4	SOX11 (ENSPTXG00000010926) #7	CMPK2 (ENSPTXG00000010928) #8	RSAD2 (ENSPTXG00000010934) #9	RNF144A (ENSPTXG00000010943) #10	ID2 (ENSPTXG00000010944) #11	KIDINS220 (ENSPTXG00000010945) #12	MBOAT2 (ENSPTXG00000010950) #13	ASAP2 (ENSPTXG00000010952) #14	ITGB1BP1 (ENSPTXG00000010957) #16	CPSF3 (ENSPTXG00000010959) #17	IAH1 (ENSPTXG00000010961) #18	ADAM17 (ENSPTXG00000010969) #19	YWHAQ (ENSPTXG00000012051) #20	ENSPTXG00000012054 #21	ENSPTXG00000012055 #21	GRHL1 (ENSPTXG00000012057) #22	KLF11 (ENSPTXG00000012059) #23	MTO1 (ENSPTXG00000012060)	RRM2 (ENSPTXG00000012071) #26	HPCAL1 (ENSPTXG00000012834) #27	ODC1 (ENSPTXG00000012836) #28	NOL10 (ENSPTXG00000012838) #29	ATP6V1C2 (ENSPTXG00000012840) #30	PDIA6 (ENSPTXG00000012842) #31	KCNF1 (ENSPTXG00000012843) #32	C2orf50 (ENSPTXG00000012845) #33	SLC66A3 (ENSPTXG00000012846) #34	ROCK2 (ENSPTXG00000012863) #35	E2F6 (ENSPTXG00000014503) #36	ENSPTXG00000014504	GREB1 (ENSPTXG00000014506) #37
Mainland tiger snake	MODERN SPECIES	61	SOX11 (ENSNSUG00000020465) #7	CMPK2 (ENSNSUG00000020464) #8	RSAD2 (ENSNSUG00000020463) #9	RNF144A (ENSNSUG00000020462) #10	ID2 (ENSNSUG00000020460) #11	KIDINS220 (ENSNSUG00000020459) #12	MBOAT2 (ENSNSUG00000020458) #13	ENSNSUG00000020457	ASAP2 (ENSNSUG00000020456) #14	ITGB1BP1 (ENSNSUG00000020455) #16	CPSF3 (ENSNSUG00000020429) #17	IAH1 (ENSNSUG00000020427) #18	ADAM17 (ENSNSUG00000020420) #19	YWHAQ (ENSNSUG00000020419) #20	TAF1B (ENSNSUG00000020418) #21	GRHL1 (ENSNSUG00000020417) #22	KLF11 (ENSNSUG00000020416) #23	MTO1 (ENSNSUG00000020415)	RRM2 (ENSNSUG00000020414) #26	HPCAL1 (ENSNSUG00000020412) #27	ODC1 (ENSNSUG00000020411) #28	NOL10 (ENSNSUG00000020410) #29	ATP6V1C2 (ENSNSUG00000020409) #30	PDIA6 (ENSNSUG00000020408) #31	KCNF1 (ENSNSUG00000020407) #32	C2orf50 (ENSNSUG00000020406) #33	ENSNSUG00000020405	ROCK2 (ENSNSUG00000020375) #35	ENSNSUG00000020374 #36	GREB1 (ENSNSUG00000020373) #37	ENSNSUG00000020371
Blue-lipped sea krait	MODERN SPECIES	4627																GRHL1 (ENSLLTG00000007820) #22
Indian cobra	MODERN SPECIES		CMPK2 (ENSNNAG00000011083) #8	RSAD2 (ENSNNAG00000011105) #9	RNF144A (ENSNNAG00000011228) #10	ID2 (ENSNNAG00000011245) #11	ENSNNAG00000011258	KIDINS220 (ENSNNAG00000011277) #12	MBOAT2 (ENSNNAG00000011525) #13	ASAP2 (ENSNNAG00000011592) #14	ITGB1BP1 (ENSNNAG00000011812) #16	ENSNNAG00000011863	CPSF3 (ENSNNAG00000011872) #17	IAH1 (ENSNNAG00000011930) #18	ADAM17 (ENSNNAG00000011958) #19	YWHAQ (ENSNNAG00000012018) #20	TAF1B (ENSNNAG00000012041) #21	GRHL1 (ENSNNAG00000012148) #22	KLF11 (ENSNNAG00000012239) #23	ENSNNAG00000012268	ENSNNAG00000012297	ENSNNAG00000012340	ENSNNAG00000012348	RRM2 (ENSNNAG00000012363) #26	HPCAL1 (ENSNNAG00000012397) #27	ODC1 (ENSNNAG00000012411) #28	NOL10 (ENSNNAG00000012445) #29	ATP6V1C2 (ENSNNAG00000012518) #30	PDIA6 (ENSNNAG00000012553) #31	KCNF1 (ENSNNAG00000012626) #32	C2orf50 (ENSNNAG00000012650) #33	SLC66A3 (ENSNNAG00000012672) #34	ROCK2 (ENSNNAG00000012714) #35
Lizard	MODERN SPECIES		ENSACAG00000037631	MBOAT2 (ENSACAG00000002267) #13	ENSACAG00000041154	ASAP2 (ENSACAG00000002004) #14	ITGB1BP1 (ENSACAG00000001993) #16	CPSF3 (ENSACAG00000001759) #17	ENSACAG00000021110	IAH1 (ENSACAG00000001615) #18	ADAM17 (ENSACAG00000001356) #19	YWHAQ (ENSACAG00000001306) #20	ENSACAG00000039990	ENSACAG00000040391	ENSACAG00000040523	TAF1B (ENSACAG00000000152) #21	ENSACAG00000040408	GRHL1 (ENSACAG00000000132) #22	KLF11 (ENSACAG00000000128) #23	RRM2 (ENSACAG00000000112) #26	HPCAL1 (ENSACAG00000012561) #27	ODC1 (ENSACAG00000012600) #28	NOL10 (ENSACAG00000012738) #29	ATP6V1C2 (ENSACAG00000012893) #30	PDIA6 (ENSACAG00000012985) #31	C2orf50 (ENSACAG00000000194) #33	SLC66A3 (ENSACAG00000039706) #34	ROCK2 (ENSACAG00000000198) #35	ENSACAG00000042387	ENSACAG00000044307	ENSACAG00000034810	E2F6 (ENSACAG00000000263) #36	ENSACAG00000042924
tuatara	MODERN SPECIES	1059	ENSSPUG00000015261	SRSF4 (ENSSPUG00000015318)	MECR (ENSSPUG00000015330)	PTPRU (ENSSPUG00000015342)	ENSSPUG00000015377	ID2 (ENSSPUG00000015382) #11	KIDINS220 (ENSSPUG00000015402) #12	MBOAT2 (ENSSPUG00000015454) #13	ASAP2 (ENSSPUG00000015478) #14	ITGB1BP1 (ENSSPUG00000015506) #16	CPSF3 (ENSSPUG00000015525) #17	IAH1 (ENSSPUG00000015596) #18	ADAM17 (ENSSPUG00000015632) #19	YWHAQ (ENSSPUG00000015663) #20	TAF1B (ENSSPUG00000015685) #21	GRHL1 (ENSSPUG00000015713) #22	KLF11 (ENSSPUG00000015734) #23	HPCAL1 (ENSSPUG00000015772) #27	ODC1 (ENSSPUG00000015782) #28	NOL10 (ENSSPUG00000015811) #29	ENSSPUG00000015855 #30	PDIA6 (ENSSPUG00000015876) #31
Anura	ANCESTRAL SPECIES	32	ENSGT00390000001793	ENSGT00940000161652 #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714 #12	ENSGT01030000234564.a.a.a.a.b #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699 #17	ENSGT00390000008069 #18	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000154645.A #27	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36	ENSGT00390000008041.C #37	ENSGT01100000263518.A.a.a.b	ENSGT00940000157219
Frog	MODERN SPECIES	5	ENSXETG00000042607	cmpk2 (ENSXETG00000023437) #8	ENSXETG00000046085	rsad2 (ENSXETG00000023435) #9	rnf144a (ENSXETG00000023433) #10	id2 (ENSXETG00000040416) #11	kidins220 (ENSXETG00000008271) #12	mboat2 (ENSXETG00000036035) #13	asap2 (ENSXETG00000008265) #14	itgb1bp1 (ENSXETG00000008264) #16	cpsf3 (ENSXETG00000008263) #17	iah1 (ENSXETG00000026506) #18	adam17 (ENSXETG00000008262) #19	ywhaq (ENSXETG00000007010) #20	taf1b (ENSXETG00000007011) #21	grhl1 (ENSXETG00000007012) #22	klf11 (ENSXETG00000007013) #23	MGC147302 (ENSXETG00000031276)	rrm2.2 (ENSXETG00000036052) #26	ENSXETG00000043226	hpcal1 (ENSXETG00000003521) #27	odc1 (ENSXETG00000003519) #28	nol10 (ENSXETG00000003518) #29	atp6v1c2 (ENSXETG00000003516) #30	pdia6 (ENSXETG00000003512) #31	KCNF1 (ENSXETG00000003508) #32	pgat (ENSXETG00000039468)	ENSXETG00000041636	c2orf50 (ENSXETG00000023781) #33	slc66a3 (ENSXETG00000024438) #34	rock2 (ENSXETG00000023782) #35
Leishan spiny toad	MODERN SPECIES	7	ID2 (ENSLLEG00000021970) #11	ENSLLEG00000021946	ENSLLEG00000021889	KIDINS220 (ENSLLEG00000021372) #12	MBOAT2 (ENSLLEG00000021230) #13	ASAP2 (ENSLLEG00000019352) #14	ENSLLEG00000019276	ITGB1BP1 (ENSLLEG00000019225) #16	CPSF3 (ENSLLEG00000018593) #17	IAH1 (ENSLLEG00000018504) #18	ENSLLEG00000018485	ADAM17 (ENSLLEG00000017494) #19	YWHAQ (ENSLLEG00000017369) #20	ENSLLEG00000017339	TAF1B (ENSLLEG00000016913) #21	GRHL1 (ENSLLEG00000016275) #22	KLF11 (ENSLLEG00000016184) #23	RRM2 (ENSLLEG00000015723) #26	COPS9 (ENSLLEG00000015618)	ENSLLEG00000015595	ENSLLEG00000015564	ENSLLEG00000015548	ENSLLEG00000015508	ENSLLEG00000015438	ENSLLEG00000015410	ENSLLEG00000015392
Actinopterygii	ANCESTRAL SPECIES	285								ENSGT00390000005318.b.b.b	ENSGT00940000158613	ENSGT00940000178962	ENSGT00390000015214	ENSGT00940000178388	ENSGT00390000015159.a.a	ENSGT00940000165764	ENSGT00390000017767.b.b	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000158110	ENSGT00390000004700.a
Reedfish	MODERN SPECIES	11	sox11a (ENSECRG00000010200) #7	CMPK2 (ENSECRG00000010193) #8	rsad2 (ENSECRG00000010187) #9	rnf144aa (ENSECRG00000010177) #10	id2a (ENSECRG00000010167) #11	kidins220b (ENSECRG00000010109) #12	mboat2b (ENSECRG00000010060) #13	e2f6 (ENSECRG00000010036) #36	asap2a (ENSECRG00000009968) #14	itgb1bp1 (ENSECRG00000009944) #16	cpsf3 (ENSECRG00000009905) #17	iah1 (ENSECRG00000009882) #18	ywhaqb (ENSECRG00000009863) ##20	adam17a (ENSECRG00000009845) #19	taf1b (ENSECRG00000009821) #21	grhl1 (ENSECRG00000009767) #22	klf11a (ENSECRG00000009752) #23	rrm2 (ENSECRG00000009736) #26	ENSECRG00000009725	ENSECRG00000009717	hpcal1 (ENSECRG00000009705) #27	odc1 (ENSECRG00000009691) #28	nol10 (ENSECRG00000009627) #29	ATP6V1C2 (ENSECRG00000009572) #30	pdia6 (ENSECRG00000009551) #31	kcnf1a (ENSECRG00000009544) #32	ENSECRG00000009540	si:dkey-18j18.3 (ENSECRG00000009529) #33	ENSECRG00000009509	ENSECRG00000009493	slc66a3 (ENSECRG00000009471) #34
Neopterygii	ANCESTRAL SPECIES	48	ENSGT00940000155718	ENSGT00940000154641.B.a	ENSGT00390000003245	ENSGT00940000153375	ENSGT00390000018108	ENSGT00950000182963.a.b	ENSGT00940000156949	ENSGT00390000005318.b.b.b	ENSGT00940000158613	ENSGT00940000178962	ENSGT00390000015214	ENSGT00940000178388	ENSGT00390000015159.a.a	ENSGT00940000165764	ENSGT00390000017767.b.b	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a #26	ENSGT00940000155727	ENSGT00940000158110	ENSGT00390000004700.a	ENSGT01030000234911	ENSGT01030000234513.A.a.a.a.a	ENSGT01020000230683	ENSGT01030000234513.A.a.a.a.b.c	ENSGT00940000154928.c.b	ENSGT00940000158569	ENSGT00940000166437	ENSGT00940000154994.b	ENSGT00940000157491	ENSGT00440000035378.c
Spotted gar	MODERN SPECIES	647	sox11a (ENSLOCG00000018008) #7	CMPK2 (ENSLOCG00000016807) #8	rsad2 (ENSLOCG00000016810) #9	rnf144aa (ENSLOCG00000016812) #10	id2a (ENSLOCG00000016814) #11	kidins220b (ENSLOCG00000016815) #12	mboat2b (ENSLOCG00000016816) #13	e2f6 (ENSLOCG00000016817) #36	asap2a (ENSLOCG00000016818) #14	itgb1bp1 (ENSLOCG00000016822) #16	cpsf3 (ENSLOCG00000016823) #17	iah1 (ENSLOCG00000016826) #18	adam17a (ENSLOCG00000016828) #19	ywhaqa (ENSLOCG00000016833) ##20	taf1b (ENSLOCG00000016834) #21	grhl1 (ENSLOCG00000016835) #22	klf11a (ENSLOCG00000016837) #23	rrm2 (ENSLOCG00000016838) #26	LGALS8 (ENSLOCG00000016840)	zdhhc14 (ENSLOCG00000016842)	tmem242 (ENSLOCG00000016844)	arid1b (ENSLOCG00000016845)	ENSLOCG00000016847	NOX3 (ENSLOCG00000016849)	tfb1m (ENSLOCG00000016850)	TIAM2 (ENSLOCG00000016852)	SCAF8 (ENSLOCG00000016856)	ENSLOCG00000016857	mocs3 (ENSLOCG00000016860)	ENSLOCG00000016863	PRKD3 (ENSLOCG00000016864)
Osteoglossocephalai	ANCESTRAL SPECIES	425												ENSGT00390000003990 #16	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.m.a.a ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23
Osteoglossiformes	ANCESTRAL SPECIES	161							ENSGT00940000156464.q #11	ENSGT00940000156714.a #12	ENSGT00940000173435	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.m.a.a ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00940000156483.h.a	ENSGT00940000155634.q.a	ENSGT00940000160501	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252.g	ENSGT00940000157012.k	ENSGT00530000063946.b.e	ENSGT00940000163429.D.gc	ENSGT00390000003107.a	ENSGT00940000160847	ENSGT00950000183024.a.a.b.q	ENSGT00940000155999.e.a	ENSGT00940000159137.b.a	ENSGT00940000159727
Asian bonytongue	MODERN SPECIES	6	ENSSFOG00015010726	colec11 (ENSSFOG00015010703)	ENSSFOG00015010662	sox11a (ENSSFOG00015010614) #7	CMPK2 (ENSSFOG00015010604) #8	rsad2 (ENSSFOG00015010483) #9	rnf144aa (ENSSFOG00015024957) #10	id2a (ENSSFOG00015010444) #11	KIDINS220 (ENSSFOG00015010248) #12	MBOAT2 (ENSSFOG00015010179) #13	asap2a (ENSSFOG00015010154) #14	itgb1bp1 (ENSSFOG00015010133) #16	iah1 (ENSSFOG00015010115) #18	adam17a (ENSSFOG00015010069) #19	ywhaqb (ENSSFOG00015010045) ##20	grhl1 (ENSSFOG00015009961) #22	klf11b (ENSSFOG00015009926) #23	ZDHHC14 (ENSSFOG00015009868)	ARID1B (ENSSFOG00015009783)	CLDN20 (ENSSFOG00015024629)	tfb1m (ENSSFOG00015009739)	TIAM2 (ENSSFOG00015009593)	SCAF8 (ENSSFOG00015009481)	ENSSFOG00015009395	QPCT (ENSSFOG00015009365)	mocs3 (ENSSFOG00015009346)	PRKD3 (ENSSFOG00015009297)	foxa2 (ENSSFOG00015025782)	ENSSFOG00015024589	pax1a (ENSSFOG00015009264)	nkx2.2a (ENSSFOG00015027933)
P. kingsleyae	MODERN SPECIES	120													ENSPKIG00000019712 #19	ENSPKIG00000019746	ywhaqb (ENSPKIG00000019763) ##20	grhl1 (ENSPKIG00000019803) #22	ZDHHC14 (ENSPKIG00000019881)	ARID1B (ENSPKIG00000019932)	NOX3 (ENSPKIG00000020313)	tfb1m (ENSPKIG00000021117)	CLDN20 (ENSPKIG00000021154)	TIAM2 (ENSPKIG00000021169)	SCAF8 (ENSPKIG00000021212)	ENSPKIG00000021250	QPCT (ENSPKIG00000021290)	mocs3 (ENSPKIG00000021324)	PRKD3 (ENSPKIG00000021379)	foxa2 (ENSPKIG00000021452)	pax1a (ENSPKIG00000021462)	nkx2.2a (ENSPKIG00000021491)	nkx2.4a (ENSPKIG00000021504)
Clupeocephala	ANCESTRAL SPECIES	1	ENSGT00940000161652.b.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714.b #12	ENSGT01030000234564.a.a.a.a.b.b #13	ENSGT00940000155734 #36	ENSGT00940000156714.a #12	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000155623 #14	ENSGT00940000155699.a.a #17	ENSGT00940000155443.d #19	ENSGT01090000260040.b.b.b.a.m.b ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00940000155982.e.b #23	ENSGT00390000013305.a.a #26	ENSGT00940000155727.o.b	ENSGT00940000156483.h.b	ENSGT00390000008642	ENSGT00940000155634.q.b	ENSGT00940000161252.h	ENSGT00940000157012.l	ENSGT00940000163429.A	ENSGT00940000163429.C	ENSGT00800000125320	ENSGT00950000183024.a.a.b.r	ENSGT00390000001588	ENSGT00500000045333
Euteleosteomorpha	ANCESTRAL SPECIES	8	ENSGT00390000004313	ENSGT00390000005242	ENSGT00940000153592.A.a	ENSGT00940000157913.b.b	ENSGT01030000234667.b.f.a	ENSGT00390000007441	ENSGT00940000155671.y.b	ENSGT00390000003466	ENSGT00390000014122	ENSGT00390000001793	ENSGT00940000161652.b.a #7	ENSGT00940000155699.a.a #17	ENSGT00940000155443.d #19	ENSGT01090000260040.b.b.b.a.m.a.b ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00940000155982.e.b #23	ENSGT00390000013305.a.a #26	ENSGT00940000155727.o.b	ENSGT00940000156483.h.b	ENSGT00390000008642	ENSGT00940000155634.q.b	ENSGT00940000161252.h	ENSGT00940000157012.l	ENSGT00940000163429.A	ENSGT00940000163429.C	ENSGT00800000125320	ENSGT00950000183024.a.a.b.r	ENSGT00390000001588	ENSGT00500000045333
Protacanthopterygii	ANCESTRAL SPECIES	72	ENSGT00940000161652.b.b.o.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714.b #12	ENSGT01030000234564.a.a.a.a.b.b #13	ENSGT00940000155734 #36	ENSGT00940000156714.a #12	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.m.a.a ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00940000157136.a	ENSGT00950000183149.C.a	ENSGT00940000155500.e	ENSGT00940000154928.c.a.a	ENSGT00390000010056.a	ENSGT00390000017953.B	ENSGT00940000156546.`b.b	ENSGT00940000160590	ENSGT00940000156992.f	ENSGT00940000156766	ENSGT00980000199001	ENSGT00390000005861.b	ENSGT00950000183142.a.b.a.b	ENSGT00390000018900
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	234	ENSGT00940000156078.c.f	ENSGT00940000155724.q	ENSGT00940000159468.h	ENSGT00940000161652.b.b.o.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670.h.b.a #9	ENSGT00940000157701.l.b.a.b #10	ENSGT00940000156464.mb.b.a #11	ENSGT00940000156714.a.c #12	ENSGT01030000234564.a.a.a.a.b.a.b #13	ENSGT00940000155623.ib.a.a #14	ENSGT00390000003990 #16	ENSGT00390000008069 #18	ENSGT00940000155443.c.c #19	ENSGT01090000260040.b.b.b.a.m.a.a.c ##20	ENSGT00940000157612.a.a #22	ENSGT00940000155982.e.a.d #23	ENSGT00940000157136.a.c	ENSGT00950000183149.C.a.c	ENSGT00940000155500.e.d	ENSGT00940000154928.c.a.a.c	ENSGT00390000010056.a	ENSGT00390000017953.B.d	ENSGT00940000165019.e	ENSGT00940000156992.f.c	ENSGT00940000156766	ENSGT00980000199001	ENSGT00390000004799.cc.b
Huchen	MODERN SPECIES	809												ITGB1BP1 (ENSHHUG00000047153) #16	iah1 (ENSHHUG00000047165) #18	adam17a (ENSHHUG00000047178) #19	ywhaqb (ENSHHUG00000047266) ##20	grhl1 (ENSHHUG00000047306) #22	klf11b (ENSHHUG00000047332) #23	znf395a (ENSHHUG00000047336)	ENSHHUG00000047341	KIF13B (ENSHHUG00000047346)	hmbox1a (ENSHHUG00000047765)	ENSHHUG00000047768	ENSHHUG00000047775	ENSHHUG00000047785
Salmoninae_a	ANCESTRAL SPECIES	36	ENSGT00940000159468.h	ENSGT00940000161652.b.b.o.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670.h.b.a #9	ENSGT00390000013670.h.a #9	ENSGT00940000157701.l.a #10	ENSGT00940000157701.l.b.a.b #10	ENSGT00940000156464.mb.b.a #11	ENSGT00940000156714.a.c #12	ENSGT01030000234564.a.a.a.a.b.a.b #13	ENSGT00940000155623.ib.a.a #14	ENSGT00390000003990 #16	ENSGT00390000008069 #18	ENSGT00940000155443.c.c #19	ENSGT01090000260040.b.b.b.a.m.a.a.c ##20	ENSGT00940000157612.a.a #22	ENSGT00940000155982.e.a.d #23	ENSGT00940000157136.a.c	ENSGT00950000183149.C.a.c	ENSGT00940000155500.e.d	ENSGT00940000154928.c.a.a.c	ENSGT00390000010056.a	ENSGT00390000017953.B.d	ENSGT00940000165019.e	ENSGT00940000156992.f.c	ENSGT00940000156766	ENSGT00390000005861.b.c	ENSGT00390000004799.cc.b	ENSGT00390000018900.r	ENSGT00940000163104	ENSGT00940000157219.f.c
Oncorhynchus	ANCESTRAL SPECIES	36	ENSGT00940000155724.q	ENSGT00940000159468.h	ENSGT00940000161652.b.b.o.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670.h.b.a #9	ENSGT00390000013670.h.a #9	ENSGT00940000157701.l.b.a.b #10	ENSGT00940000156464.mb.b.a #11	ENSGT00940000156714.a.c #12	ENSGT01030000234564.a.a.a.a.b.a.b #13	ENSGT00940000155623.ib.a.a #14	ENSGT00390000003990 #16	ENSGT00390000008069 #18	ENSGT00940000155443.c.c #19	ENSGT01090000260040.b.b.b.a.m.a.a.c ##20	ENSGT00940000157612.a.a #22	ENSGT00940000155982.e.a.d #23	ENSGT00940000159405.c	ENSGT00940000157136.a.c	ENSGT00950000183149.C.a.c	ENSGT00940000155500.e.d	ENSGT00940000154928.c.a.a.c	ENSGT00390000010056.a	ENSGT00390000017953.B.d	ENSGT00940000165019.e	ENSGT00940000156992.f.c	ENSGT00940000156766	ENSGT00390000005861.b.c	ENSGT00390000004799.cc.b	ENSGT00390000018900.r	ENSGT00940000163104
Oncorhynchus_a	ANCESTRAL SPECIES	33	ENSGT00940000155724.q	ENSGT00940000159468.h	ENSGT00940000161652.b.b.o.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670.h.b.a #9	ENSGT00390000013670.h.a #9	ENSGT00940000157701.l.b.a.b #10	ENSGT00940000156464.mb.b.a #11	ENSGT00940000156714.a.c #12	ENSGT01030000234564.a.a.a.a.b.a.b #13	ENSGT00940000155623.ib.a.a #14	ENSGT00390000003990 #16	ENSGT00390000008069 #18	ENSGT00940000155443.c.c #19	ENSGT01090000260040.b.b.b.a.m.a.a.c ##20	ENSGT00940000157612.a.a #22	ENSGT00940000155982.e.a.d #23	ENSGT00940000157136.a.c	ENSGT00950000183149.C.a.c	ENSGT00940000155500.e.d	ENSGT00940000154928.c.a.a.c	ENSGT00390000010056.a	ENSGT00390000017953.B.d	ENSGT00940000165019.e	ENSGT00940000156992.f.c	ENSGT00940000156766	ENSGT00390000005861.b.c	ENSGT00390000004799.cc.b	ENSGT00390000018900.r	ENSGT00940000163104	ENSGT00940000157219.f.c
Chinook salmon	MODERN SPECIES	32	colec11 (ENSOTSG00005022909)	ENSOTSG00005022910	sox11a (ENSOTSG00005022911) #7	CMPK2 (ENSOTSG00005022913) #8	rsad2 (ENSOTSG00005022914) #9	rsad2 (ENSOTSG00005022915) #9	rnf144aa (ENSOTSG00005022916) #10	id2a (ENSOTSG00005022922) #11	KIDINS220 (ENSOTSG00005022924) #12	MBOAT2 (ENSOTSG00005023056) #13	asap2a (ENSOTSG00005023061) #14	itgb1bp1 (ENSOTSG00005023578) #16	iah1 (ENSOTSG00005023586) #18	adam17a (ENSOTSG00005023608) #19	ywhaqb (ENSOTSG00005024325) ##20	grhl1 (ENSOTSG00005024345) #22	klf11b (ENSOTSG00005025136) #23	znf395a (ENSOTSG00005025139)	ENSOTSG00005025142	KIF13B (ENSOTSG00005025169)	ENSOTSG00005027420	hmbox1a (ENSOTSG00005027422)	ENSOTSG00005027426	ENSOTSG00005027428	ENSOTSG00005027431	KIF26B (ENSOTSG00005027433)	smyd3 (ENSOTSG00005027435)	SCCPDH (ENSOTSG00005004134)	ENSOTSG00005004326	ENSOTSG00005004338	ENSOTSG00005004406
Coho salmon	MODERN SPECIES	5	ENSOKIG00005005633	COLEC11 (ENSOKIG00005005626)	sox11a (ENSOKIG00005005621) #7	CMPK2 (ENSOKIG00005005614) #8	rsad2 (ENSOKIG00005005585) #9	rsad2 (ENSOKIG00005005503) #9	rnf144aa (ENSOKIG00005005477) #10	id2a (ENSOKIG00005005464) #11	KIDINS220 (ENSOKIG00005005405) #12	MBOAT2 (ENSOKIG00005004613) #13	asap2a (ENSOKIG00005004401) #14	itgb1bp1 (ENSOKIG00005049877) #16	iah1 (ENSOKIG00005049874) #18	adam17a (ENSOKIG00005049208) #19	ywhaqb (ENSOKIG00005049092) ##20	GRHL1 (ENSOKIG00005049051) #22	ENSOKIG00005049033	znf395a (ENSOKIG00005049026)	ENSOKIG00005049022	KIF13B (ENSOKIG00005048648)	hmbox1a (ENSOKIG00005048605)	ENSOKIG00005048596	ENSOKIG00005048592	smyd3 (ENSOKIG00005048583)	ENSOKIG00005048578	SCCPDH (ENSOKIG00005048541)	ENSOKIG00005048526	ENSOKIG00005048370	ENSOKIG00005048346	lpin1a (ENSOKIG00005048336)	ENSOKIG00005048292 ##37
Rainbow trout	MODERN SPECIES	17	vig1 (ENSOMYG00000024630) #9	rnf144aa (ENSOMYG00000024671) #10	ENSOMYG00000060253	ENSOMYG00000056773	id2a (ENSOMYG00000024697) #11	KIDINS220 (ENSOMYG00000024757) #12	ENSOMYG00000061104	MBOAT2 (ENSOMYG00000024831) #13	asap2a (ENSOMYG00000025517) #14	ENSOMYG00000039364	itgb1bp1 (ENSOMYG00000028983) #16	iah1 (ENSOMYG00000029015) #18	adam17a (ENSOMYG00000029732) #19	ENSOMYG00000030603 ##20	ENSOMYG00000057253	ENSOMYG00000030683 #22	ENSOMYG00000030928	znf395a (ENSOMYG00000030940)	ENSOMYG00000066884	ENSOMYG00000031233	ENSOMYG00000032113	hmbox1a (ENSOMYG00000032119)	ENSOMYG00000057324	ENSOMYG00000032131	ENSOMYG00000032141	ENSOMYG00000032210	ENSOMYG00000032216	ENSOMYG00000032245	ENSOMYG00000032506	lpin1a (ENSOMYG00000033049)	ENSOMYG00000033124 ##37
Salmo	ANCESTRAL SPECIES	11	ENSGT00940000156078.c.f	ENSGT00940000155724.q	ENSGT00940000159468.h	ENSGT00940000161652.b.b.o.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670.h.a #9	ENSGT00940000157701.l.a #10	ENSGT00940000156464.mb.b.a #11	ENSGT00940000156714.a.c #12	ENSGT01030000234564.a.a.a.a.b.a.b #13	ENSGT00940000155623.ib.a.a #14	ENSGT00390000003990 #16	ENSGT00390000008069 #18	ENSGT00940000155443.c.c #19	ENSGT01090000260040.b.b.b.a.m.a.a.c ##20	ENSGT00940000157612.a.a #22	ENSGT00940000159405.c	ENSGT00940000157136.a.c	ENSGT00950000183149.C.a.c	ENSGT00940000155500.e.d	ENSGT00940000154928.c.a.a.c	ENSGT00390000010056.a	ENSGT00390000017953.B.d	ENSGT00940000156992.f.c	ENSGT00940000156766	ENSGT00390000005861.b.c	ENSGT00390000004799.cc.b	ENSGT00390000018900.r	ENSGT00940000163104	ENSGT00940000157219.f.c	ENSGT00390000008041.A.c ##37
Atlantic salmon	MODERN SPECIES	28	rsad2 (ENSSSAG00000108937) #9	rsad2 (ENSSSAG00000106505) #9	rsad2 (ENSSSAG00000108840) #9	rnf144aa (ENSSSAG00000007924) #10	ENSSSAG00000018542	ENSSSAG00000089206	ID2 (ENSSSAG00000121872) #11	KIDINS220 (ENSSSAG00000008076) #12	ENSSSAG00000093491	MBOAT2 (ENSSSAG00000118144) #13	asap2a (ENSSSAG00000015430) #14	itgb1bp1 (ENSSSAG00000044455) #16	iah1 (ENSSSAG00000044498) #18	adam17a (ENSSSAG00000044555) #19	1433b (ENSSSAG00000045629) ##20	GRHL1 (ENSSSAG00000045675) #22	ENSSSAG00000046216	znf395a (ENSSSAG00000046223)	ENSSSAG00000114233	ENSSSAG00000046229	ENSSSAG00000046425	hmbox1a (ENSSSAG00000107279)	ENSSSAG00000098966	ENSSSAG00000054082	ENSSSAG00000055146	smyd3 (ENSSSAG00000055172)	ENSSSAG00000122290	scpdh (ENSSSAG00000055195)	ENSSSAG00000055265	ENSSSAG00000057210	lpin1a (ENSSSAG00000057291)
River trout	MODERN SPECIES	17	myo6b (ENSSTUG00000032699)	ENSSTUG00000032683	colec11 (ENSSTUG00000032668)	sox11a (ENSSTUG00000032660) #7	CMPK2 (ENSSTUG00000032649) #8	rsad2 (ENSSTUG00000032593) #9	rnf144aa (ENSSTUG00000032541) #10	id2a (ENSSTUG00000032529) #11	KIDINS220 (ENSSTUG00000032081) #12	MBOAT2 (ENSSTUG00000031347) #13	asap2a (ENSSTUG00000029463) #14	itgb1bp1 (ENSSTUG00000029391) #16	iah1 (ENSSTUG00000029379) #18	adam17a (ENSSTUG00000025308) #19	ENSSTUG00000025080 ##20	grhl1 (ENSSTUG00000024466) #22	ENSSTUG00000024428	znf395a (ENSSTUG00000024417)	ENSSTUG00000024409	KIF13B (ENSSTUG00000020959)	hmbox1a (ENSSTUG00000020701)	ENSSTUG00000020671	ENSSTUG00000020638	KIF26B (ENSSTUG00000020563)	smyd3 (ENSSTUG00000020480)	ENSSTUG00000020467	SCCPDH (ENSSTUG00000020342)	AHCTF1 (ENSSTUG00000020104)	ENSSTUG00000020031	lpin1a (ENSSTUG00000019820)	ENSSTUG00000019073 ##37
Salmoninae	ANCESTRAL SPECIES	935															ENSGT00940000162556.G.d.g.a.b.a	ENSGT00940000157612.a.b #22	ENSGT00940000155982.e.a.c #23	ENSGT00940000157136.a.d	ENSGT00950000183149.C.a.d	ENSGT00940000155500.e.c	ENSGT00940000154928.c.a.a.d
Salmoninae_a	ANCESTRAL SPECIES	180															ENSGT00940000162556.G.d.g.a.b.a	ENSGT00940000157612.a.b #22	ENSGT00940000155982.e.a.c #23	ENSGT00940000157136.a.d	ENSGT00950000183149.C.a.d	ENSGT00940000155500.e.c	ENSGT00940000154928.c.a.a.d	ENSGT00390000017953.B.c	ENSGT00940000156546.`b.b	ENSGT00940000160590	ENSGT00940000156992.f.d	ENSGT00940000175771	ENSGT00940000165019.f
Oncorhynchus	ANCESTRAL SPECIES	6	ENSGT00530000063503.a.b.g.b.c	ENSGT00940000156078.c.e	ENSGT00940000159468.g	ENSGT00940000164359.b	ENSGT00940000161652.b.b.p.a.a #7	ENSGT00390000013670.g #9	ENSGT00940000157701.l.b.a.a #10	ENSGT00940000156464.mb.b.b #11	ENSGT00940000156714.a.d #12	ENSGT01030000234564.a.a.a.a.b.a.a #13	ENSGT00940000155623.ib.a.b #14	ENSGT00940000155443.c.d #19	ENSGT01090000260040.b.b.b.a.m.a.a.d ##20	ENSGT00940000162556.G.d.g.a.a	ENSGT01090000260226.c	ENSGT00940000157612.a.b #22	ENSGT00940000155982.e.a.c #23	ENSGT00940000157136.a.d	ENSGT00950000183149.C.a.d	ENSGT00940000155500.e.c	ENSGT00940000154928.c.a.a.d	ENSGT00390000017953.B.c	ENSGT00940000156546.`b.b	ENSGT00940000160590	ENSGT00940000156992.f.d	ENSGT01030000235230	ENSGT00950000183142.a.b.a.b	ENSGT00390000004799.cc.a	ENSGT00390000018900.q	ENSGT00940000157219.f.d	ENSGT00390000008041.A.d ##37
Rainbow trout	MODERN SPECIES	10	ENSOMYG00000030521	ENSOMYG00000032558	rsad2 (ENSOMYG00000032554) #9	rnf144aa (ENSOMYG00000032544) #10	id2 (ENSOMYG00000032530) #11	ENSOMYG00000065196	KIDINS220 (ENSOMYG00000029576) #12	ENSOMYG00000076932	MBOAT2 (ENSOMYG00000027631) #13	ENSOMYG00000053686	asap2a (ENSOMYG00000026896) #14	ENSOMYG00000023286 #19	ywhaqb (ENSOMYG00000075163) ##20	ENSOMYG00000022631	ENSOMYG00000022623	grhl1 (ENSOMYG00000022596) #22	ENSOMYG00000022560 #23	znf395a (ENSOMYG00000022552)	ENSOMYG00000022544	ENSOMYG00000058203	ENSOMYG00000017174	hmbox1a (ENSOMYG00000016816)	ENSOMYG00000016769	HNRNPU (ENSOMYG00000015805)	EFCAB2 (ENSOMYG00000015726)	ENSOMYG00000057032	KIF26B (ENSOMYG00000015716)	ENSOMYG00000015709	TFB2M (ENSOMYG00000015693)	ENSOMYG00000015570	ENSOMYG00000015454
Oncorhynchus_a	ANCESTRAL SPECIES	10	ENSGT00940000156078.c.e	ENSGT00940000159468.g	ENSGT00940000164359.b	ENSGT00940000161652.b.b.p.a.a #7	ENSGT00390000013670.g #9	ENSGT00940000157701.l.b.a.a #10	ENSGT00940000156464.mb.b.b #11	ENSGT00940000156714.a.d #12	ENSGT01100000264750	ENSGT01030000234564.a.a.a.a.b.a.a #13	ENSGT00940000155623.ib.a.b #14	ENSGT00940000155443.c.d #19	ENSGT01090000260040.b.b.b.a.m.a.a.d ##20	ENSGT00940000162556.G.d.g.a.a	ENSGT01090000260226.c	ENSGT00940000157612.a.b #22	ENSGT00940000155982.e.a.c #23	ENSGT00940000157136.a.d	ENSGT00950000183149.C.a.d	ENSGT00940000155500.e.c	ENSGT00940000154928.c.a.a.d	ENSGT00390000017953.B.c	ENSGT00940000156546.`b.b	ENSGT00940000160590	ENSGT00940000156992.f.d	ENSGT00390000004799.bc.b	ENSGT01030000235230	ENSGT00950000183142.a.b.a.b	ENSGT00390000004799.cc.a	ENSGT00390000018900.q	ENSGT00940000157219.f.d
Coho salmon	MODERN SPECIES	27	ENSOKIG00005028945	ENSOKIG00005028936	RSAD2 (ENSOKIG00005028917) #9	RNF144A (ENSOKIG00005028893) #10	id2a (ENSOKIG00005028876) #11	ENSOKIG00005028871	KIDINS220 (ENSOKIG00005026749) #12	ENSOKIG00005026591	MBOAT2 (ENSOKIG00005026470) #13	ENSOKIG00005026449	asap2a (ENSOKIG00005025976) #14	ADAM17 (ENSOKIG00005023340) #19	ywhaqb (ENSOKIG00005023149) ##20	ENSOKIG00005023141	ENSOKIG00005023102	grhl1 (ENSOKIG00005023069) #22	klf11b (ENSOKIG00005023054) #23	znf395a (ENSOKIG00005023042)	ENSOKIG00005023034	KIF13B (ENSOKIG00005016100)	hmbox1a (ENSOKIG00005015782)	ENSOKIG00005015768	HNRNPU (ENSOKIG00005015641)	EFCAB2 (ENSOKIG00005015622)	KIF26B (ENSOKIG00005015606)	ENSOKIG00005015602	tfb2m (ENSOKIG00005015587)	SCCPDH (ENSOKIG00005015044)	ENSOKIG00005013824	lpin1a (ENSOKIG00005013552)	ENSOKIG00005013347 ##37
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2966												ADAM17 (ENSOTSG00005043283) #19	ywhaqb (ENSOTSG00005043272) ##20	ENSOTSG00005043269	ENSOTSG00005043264	grhl1 (ENSOTSG00005043263) #22	klf11b (ENSOTSG00005043262) #23	znf395a (ENSOTSG00005043261)	ENSOTSG00005043260	KIF13B (ENSOTSG00005036402)	hmbox1a (ENSOTSG00005036391)	ENSOTSG00005036389	HNRNPU (ENSOTSG00005036388)	EFCAB2 (ENSOTSG00005036387)	ENSOTSG00005036385	EFCAB2 (ENSOTSG00005036384)	HNRNPU (ENSOTSG00005036382)	ENSOTSG00005036381	hmbox1a (ENSOTSG00005036380)	KIF13B (ENSOTSG00005033431)
Chinook salmon	MODERN SPECIES	2	MYO6 (ENSOTSG00005025552)	colec11 (ENSOTSG00005025527)	ENSOTSG00005025525	sox11a (ENSOTSG00005025523) #7	rsad2 (ENSOTSG00005025521) #9	rnf144aa (ENSOTSG00005025518) #10	id2a (ENSOTSG00005025516) #11	KIDINS220 (ENSOTSG00005020089) #12	ENSOTSG00005020010	MBOAT2 (ENSOTSG00005017577) #13	asap2a (ENSOTSG00005017234) #14	ADAM17 (ENSOTSG00005013854) #19	ywhaqb (ENSOTSG00005013852) ##20	ENSOTSG00005013848	ENSOTSG00005013846	grhl1 (ENSOTSG00005013839) #22	klf11b (ENSOTSG00005013836) #23	znf395a (ENSOTSG00005013834)	ENSOTSG00005013832	ENSOTSG00005013831	ENSOTSG00005013830	slc35e3 (ENSOTSG00005013829)	ENSOTSG00005013826	ENSOTSG00005013825	ENSOTSG00005013823	tfb2m (ENSOTSG00005013810)	SCCPDH (ENSOTSG00005013807)	ENSOTSG00005013803	lpin1a (ENSOTSG00005013798)	ENSOTSG00005013791 ##37	ENSOTSG00005013758
Salmo	ANCESTRAL SPECIES	8	ENSGT00940000159468.g	ENSGT00940000164359.b	ENSGT00940000161652.b.b.o.a #7	ENSGT00940000161652.b.b.p.a.a #7	ENSGT00390000013670.g #9	ENSGT00940000157701.l.b.b #10	ENSGT00940000156464.mb.b.b #11	ENSGT00940000156714.a.d #12	ENSGT01030000234564.a.a.a.a.b.a.a #13	ENSGT00940000155623.ib.a.b #14	ENSGT00940000155443.c.d #19	ENSGT01090000260040.b.b.b.a.m.a.a.d ##20	ENSGT00940000162556.G.d.g.a.a	ENSGT01090000260226.d.b	ENSGT00940000162556.G.d.g.a.b.a	ENSGT00940000157612.a.b #22	ENSGT00940000155982.e.a.c #23	ENSGT00940000157136.a.d	ENSGT00950000183149.C.a.d	ENSGT00940000155500.e.c	ENSGT00940000154928.c.a.a.d	ENSGT00390000017953.B.c	ENSGT00940000156546.`b.b	ENSGT00940000175771	ENSGT00940000165019.f	ENSGT00390000005861.b.d	ENSGT00950000183142.a.b.a.b	ENSGT00390000004799.cc.a	ENSGT00390000018900.q	ENSGT00940000157219.f.d	ENSGT00390000008041.A.d ##37
River trout	MODERN SPECIES	26	colec11 (ENSSTUG00000050845)	ENSSTUG00000050843	sox11a (ENSSTUG00000050842) #7	rsad2 (ENSSTUG00000050838) #9	rnf144aa (ENSSTUG00000050835) #10	ENSSTUG00000050833	id2a (ENSSTUG00000050831) #11	KIDINS220 (ENSSTUG00000050628) #12	MBOAT2 (ENSSTUG00000050617) #13	asap2a (ENSSTUG00000050299) #14	ADAM17 (ENSSTUG00000049899) #19	ywhaqb (ENSSTUG00000049851) ##20	ENSSTUG00000049843	ENSSTUG00000049839	ENSSTUG00000049834	grhl1 (ENSSTUG00000049825) #22	klf11b (ENSSTUG00000049822) #23	znf395a (ENSSTUG00000049819)	ENSSTUG00000049817	ENSSTUG00000049816	KIF13B (ENSSTUG00000048950)	hmbox1a (ENSSTUG00000048864)	ENSSTUG00000048859	HNRNPU (ENSSTUG00000048840)	ENSSTUG00000048831	ENSSTUG00000048824	ENSSTUG00000048818	tfb2m (ENSSTUG00000048803)	SCCPDH (ENSSTUG00000048720)	ENSSTUG00000048492	lpin1a (ENSSTUG00000048394)
Atlantic salmon	MODERN SPECIES		ENSSSAG00000115192	ENSSSAG00000108184	sox11a (ENSSSAG00000088730) #7	rsad2 (ENSSSAG00000048046) #9	rnf144aa (ENSSSAG00000048071) #10	KIDINS220 (ENSSSAG00000048356) #12	MBOAT2 (ENSSSAG00000055885) #13	ENSSSAG00000090250	ENSSSAG00000095688	asap2a (ENSSSAG00000056052) #14	ADAM17 (ENSSSAG00000057740) #19	ENSSSAG00000063098 ##20	ENSSSAG00000063122	ENSSSAG00000034115	ENSSSAG00000034349	grhl1 (ENSSSAG00000034849) #22	KLF11 (ENSSSAG00000039768) #23	znf395a (ENSSSAG00000039783)	ENSSSAG00000039798	ENSSSAG00000040186	hmbox1a (ENSSSAG00000054074)	ENSSSAG00000090710	HNRNPU (ENSSSAG00000054124)	efcab2 (ENSSSAG00000103211)	KIF26B (ENSSSAG00000113358)	ENSSSAG00000088170	ENSSSAG00000054485	TFB2M (ENSSSAG00000054498)	ENSSSAG00000054523	ENSSSAG00000108458	ahctf1 (ENSSSAG00000054720)
Huchen	MODERN SPECIES	1231				ENSHHUG00000010404	tmem88b (ENSHHUG00000010396)	tm4sf5 (ENSHHUG00000010381)	mettl3 (ENSHHUG00000010360)	ttc5 (ENSHHUG00000010345)	ENSHHUG00000010335	slc7a7 (ENSHHUG00000010251)	oxa1l (ENSHHUG00000010200)	ENSHHUG00000010199	ENSHHUG00000010191	ENSHHUG00000010177	ENSHHUG00000010141	grhl1 (ENSHHUG00000010125) #22	klf11b (ENSHHUG00000010116) #23	znf395a (ENSHHUG00000010073)	ENSHHUG00000010063
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	152				ENSGT00940000161652.b.b.p.b.b #7	ENSGT00940000157701.k.b #10	ENSGT00990000204094.c.a.a	ENSGT00940000156464.mb.a.b #11	ENSGT00940000156714.b.f #12	ENSGT01030000234564.a.a.a.a.b.b.a.a #13	ENSGT00940000155734 #36	ENSGT00940000155623.ib.b.a #14	ENSGT00940000155699.a.a #17	ENSGT00940000155443.d.i #19	ENSGT01090000260040.b.b.b.a.m.a.b.a ##20	ENSGT00440000033827 #21	ENSGT00940000157612.b.a #22	ENSGT00940000155982.e.b.g #23	ENSGT00390000013305.a.a.d #26	ENSGT00940000155727.o.b	ENSGT00940000156483.h.b.f	ENSGT00390000008642.w.a	ENSGT00390000008642.x	ENSGT00940000155634.q.b.c	ENSGT00940000161252.h.l	ENSGT00940000157012.l.c	ENSGT00940000163429.C.b	ENSGT00950000183024.a.a.b.r.b	ENSGT00390000001588.p	ENSGT00390000006395.j.b	ENSGT00940000155999.e.b.b	ENSGT00940000159137.b.b.c
Salmoninae_a	ANCESTRAL SPECIES	23				ENSGT00940000161652.b.b.p.b.b #7	ENSGT00940000157701.k.b #10	ENSGT00990000204094.c.a.a	ENSGT00940000156464.mb.a.b #11	ENSGT00940000156714.b.f #12	ENSGT01030000234564.a.a.a.a.b.b.a.a #13	ENSGT00940000155734 #36	ENSGT00940000155623.ib.b.a #14	ENSGT00940000155699.a.a #17	ENSGT00940000155443.d.i #19	ENSGT01090000260040.b.b.b.a.m.a.b.a ##20	ENSGT00440000033827 #21	ENSGT00940000157612.b.a #22	ENSGT00940000155982.e.b.g #23	ENSGT00390000013305.a.a.d #26	ENSGT00940000155727.o.b	ENSGT00940000156483.h.b.f	ENSGT00390000008642.x	ENSGT00940000155634.q.b.c	ENSGT00940000161252.h.l	ENSGT00940000157012.l.c	ENSGT00940000163429.C.b	ENSGT00950000183024.a.a.b.r.b	ENSGT00390000001588.p	ENSGT00390000006395.j.b	ENSGT00940000155999.e.b.b	ENSGT00940000159137.b.b.c	ENSGT00940000159727.k.a
Oncorhynchus	ANCESTRAL SPECIES	25	ENSGT01020000230401.a.a.a.d	ENSGT00940000163080.a.f	ENSGT00550000074807.d.a.a.a.a	ENSGT00940000161652.b.b.p.b.b #7	ENSGT00940000157701.k.b #10	ENSGT00990000204094.c.a.a	ENSGT00940000156464.mb.a.b #11	ENSGT00940000156714.b.f #12	ENSGT01030000234564.a.a.a.a.b.b.a.a #13	ENSGT00940000155734 #36	ENSGT00940000155623.ib.b.a #14	ENSGT00940000155699.a.a #17	ENSGT00940000155443.d.i #19	ENSGT01090000260040.b.b.b.a.m.a.b.a ##20	ENSGT00440000033827 #21	ENSGT00940000157612.b.a #22	ENSGT00940000155982.e.b.g #23	ENSGT00390000013305.a.a.d #26	ENSGT00940000155727.o.b	ENSGT00940000156483.h.b.f	ENSGT00390000008642.x	ENSGT00940000155634.q.b.c	ENSGT00940000161252.h.l	ENSGT00940000157012.l.c	ENSGT00940000163429.C.b	ENSGT00950000183024.a.a.b.r.b	ENSGT00390000001588.p	ENSGT00390000006395.j.b	ENSGT00940000155999.e.b.b	ENSGT00940000159137.b.b.c	ENSGT00940000159727.k.a
Oncorhynchus_a	ANCESTRAL SPECIES	17	ENSGT00940000157927.i	ENSGT01020000230401.a.a.a.d	ENSGT00940000163080.a.f	ENSGT00550000074807.d.a.a.a.a	ENSGT00940000161652.b.b.p.b.b #7	ENSGT00990000204094.c.a.a	ENSGT00940000156464.mb.a.b #11	ENSGT00940000156714.b.f #12	ENSGT01030000234564.a.a.a.a.b.b.a.a #13	ENSGT00940000155734 #36	ENSGT00940000155623.ib.b.a #14	ENSGT00940000155699.a.a #17	ENSGT00940000155443.d.i #19	ENSGT01090000260040.b.b.b.a.m.a.b.a ##20	ENSGT00440000033827 #21	ENSGT00940000157612.b.a #22	ENSGT00940000155982.e.b.g #23	ENSGT00390000013305.a.a.d #26	ENSGT00940000155727.o.b	ENSGT00940000156483.h.b.f	ENSGT00390000008642.x	ENSGT00940000155634.q.b.c	ENSGT00940000161252.h.l	ENSGT00940000157012.l.c	ENSGT00940000163429.C.b	ENSGT00950000183024.a.a.b.r.b	ENSGT00390000001588.p	ENSGT00390000006395.j.b	ENSGT00940000155999.e.b.b	ENSGT00940000159137.b.b.c	ENSGT00940000159727.k.a
Chinook salmon	MODERN SPECIES	9	hsp90ab1 (ENSOTSG00005002318)	nfkbiaa (ENSOTSG00005003896)	psma6b (ENSOTSG00005003898)	sox11b (ENSOTSG00005003905) #7	ENSOTSG00005003907	ENSOTSG00005003908	id2b (ENSOTSG00005003909) #11	kidins220b (ENSOTSG00005003919) #12	mboat2b (ENSOTSG00005003933) #13	e2f6 (ENSOTSG00005003935) #36	ASAP2 (ENSOTSG00005003996) #14	cpsf3 (ENSOTSG00005011109) #17	ADAM17 (ENSOTSG00005012037) #19	ENSOTSG00005015416 ##20	taf1b (ENSOTSG00005015417) #21	GRHL1 (ENSOTSG00005015418) #22	ENSOTSG00005015419	klf11a (ENSOTSG00005015420) #23	RRM2 (ENSOTSG00005015421) #26	LGALS8 (ENSOTSG00005016467)	zdhhc14 (ENSOTSG00005016470)	tmem242 (ENSOTSG00005016471)	arid1b (ENSOTSG00005016477)	ENSOTSG00005016480	CLDN20 (ENSOTSG00005016482)	ENSOTSG00005016486	cnksr3 (ENSOTSG00005016520)	PRKD3 (ENSOTSG00005016531)	ndufaf7 (ENSOTSG00005016902)	cebpz (ENSOTSG00005016904)	FOXA2 (ENSOTSG00005016930)
Rainbow trout	MODERN SPECIES	25	ENSOMYG00000067987	ENSOMYG00000064901 #10	ENSOMYG00000003530	id2b (ENSOMYG00000003555) #11	kidins220b (ENSOMYG00000003863) #12	mboat2b (ENSOMYG00000003933) #13	e2f6 (ENSOMYG00000003946) #36	ASAP2 (ENSOMYG00000004895) #14	ENSOMYG00000053980	cpsf3 (ENSOMYG00000005764) #17	ADAM17 (ENSOMYG00000007729) #19	ywhaqa (ENSOMYG00000009438) ##20	ENSOMYG00000072499	ENSOMYG00000046721	taf1b (ENSOMYG00000077298) #21	GRHL1 (ENSOMYG00000009524) #22	klf11a (ENSOMYG00000009549) #23	RRM2 (ENSOMYG00000009693) #26	ENSOMYG00000010358	zdhhc14 (ENSOMYG00000010383)	ENSOMYG00000070397	tmem242 (ENSOMYG00000010405)	arid1b (ENSOMYG00000010596)	CLDN20 (ENSOMYG00000010979)	TIAM2 (ENSOMYG00000010992)	ENSOMYG00000063404	ENSOMYG00000011010	PRKD3 (ENSOMYG00000011066)	ENSOMYG00000011120	CEBPZ (ENSOMYG00000011164)	FOXA2 (ENSOMYG00000011219)
Salmo	ANCESTRAL SPECIES	12	ENSGT00940000155144.n.t	ENSGT00940000156671.l.b.a	ENSGT00940000155490.a.c.a.c.b	ENSGT00940000154045.b.d.a	ENSGT00940000161652.b.b.p.b.b #7	ENSGT00940000157701.k.b #10	ENSGT00940000156464.mb.a.b #11	ENSGT00940000156714.b.f #12	ENSGT01030000234564.a.a.a.a.b.b.a.a #13	ENSGT00940000155734.kb #36	ENSGT00940000155623.ib.b.a #14	ENSGT00940000155699.a.a #17	ENSGT00940000155443.d.i #19	ENSGT01090000260040.b.b.b.a.m.a.b.a ##20	ENSGT00440000033827 #21	ENSGT00940000157612.b.a #22	ENSGT00940000155982.e.b.g #23	ENSGT00390000013305.a.a.d #26	ENSGT00940000155727.o.b	ENSGT00940000156483.h.b.f	ENSGT00390000008642.w.a	ENSGT00940000155634.q.b.c	ENSGT00940000161252.h.l	ENSGT00940000157012.l.c	ENSGT00940000163429.C.b	ENSGT00950000183024.a.a.b.r.b	ENSGT00390000001588.p	ENSGT00390000006395.j.b	ENSGT00940000155999.e.b.b	ENSGT00940000159137.b.b.c	ENSGT00940000159727.k.a
Atlantic salmon	MODERN SPECIES	25	ENSSSAG00000120792	ENSSSAG00000067588	ENSSSAG00000072133	ENSSSAG00000072139	ENSSSAG00000121038	ENSSSAG00000088329	sox11b (ENSSSAG00000072143) #7	ENSSSAG00000072144 #10	kidins220b (ENSSSAG00000072151) #12	mboat2b (ENSSSAG00000072254) #13	e2f6 (ENSSSAG00000072278) #36	ASAP2 (ENSSSAG00000072347) #14	cpsf3 (ENSSSAG00000073096) #17	ADAM17 (ENSSSAG00000073233) #19	ywhaqa (ENSSSAG00000075607) ##20	GRHL1 (ENSSSAG00000075614) #22	klf11a (ENSSSAG00000075644) #23	rrm2 (ENSSSAG00000083858) #26	lgals8a (ENSSSAG00000112692)	zdhhc14 (ENSSSAG00000075847)	arid1b (ENSSSAG00000075859)	CLDN20 (ENSSSAG00000102040)	TIAM2 (ENSSSAG00000075929)	ENSSSAG00000075966	PRKD3 (ENSSSAG00000075988)	ENSSSAG00000076174	CEBPZ (ENSSSAG00000076185)	FOXA2 (ENSSSAG00000076197)	PAX1 (ENSSSAG00000109984)	nkx2.2b (ENSSSAG00000116039)	nkx2.4b (ENSSSAG00000089853)
Huchen	MODERN SPECIES	50					ENSHHUG00000023149 #10	ENSHHUG00000023161	id2b (ENSHHUG00000023162) #11	kidins220b (ENSHHUG00000023174) #12	MBOAT2 (ENSHHUG00000023374) #13	e2f6 (ENSHHUG00000023398) #36	ASAP2 (ENSHHUG00000023420) #14	cpsf3 (ENSHHUG00000023661) #17	ADAM17 (ENSHHUG00000023751) #19	ENSHHUG00000024054 ##20	taf1b (ENSHHUG00000024093) #21	GRHL1 (ENSHHUG00000024127) #22	klf11a (ENSHHUG00000024133) #23	RRM2 (ENSHHUG00000024152) #26	LGALS8 (ENSHHUG00000024294)	zdhhc14 (ENSHHUG00000024302)	tmem242 (ENSHHUG00000024309)	arid1b (ENSHHUG00000024315)	CLDN20 (ENSHHUG00000024324)	TIAM2 (ENSHHUG00000024329)	cnksr3 (ENSHHUG00000024360)	PRKD3 (ENSHHUG00000024371)	ndufaf7 (ENSHHUG00000024766)	CEBPZ (ENSHHUG00000024789)	FOXA2 (ENSHHUG00000024806)	PAX1 (ENSHHUG00000024814)	nkx2.2b (ENSHHUG00000024821)
Salmoninae	ANCESTRAL SPECIES	402														ENSGT00940000155443.d.j #19	ENSGT01090000260040.b.b.b.a.m.a.b.b ##20	ENSGT00940000157612.b.b #22	ENSGT00940000155982.e.b.h #23	ENSGT00390000013305.a.a.c #26	ENSGT00940000156483.h.b.e	ENSGT00390000008642.w.b	ENSGT00940000155634.q.b.d	ENSGT00940000161252.h.k	ENSGT00940000157012.l.d	ENSGT00940000163429.B	ENSGT00940000163429.A	ENSGT00940000163429.C.a.b	ENSGT00800000125320	ENSGT00950000183024.a.a.b.r.a	ENSGT00390000001588.o	ENSGT00390000006395.j.a	ENSGT00500000045333
Salmoninae_a	ANCESTRAL SPECIES	42	ENSGT00940000159120.f.c	ENSGT00940000157927.j	ENSGT01020000230401.a.a.a.c	ENSGT00940000163080.a.e	ENSGT00550000074807.d.a.a.a.b	ENSGT00390000016736.a.j	ENSGT00940000161652.b.b.p.b.a #7	ENSGT00940000157701.k.a #10	ENSGT00940000156464.mb.a.a #11	ENSGT00940000156714.b.e #12	ENSGT01030000234564.a.a.a.a.b.b.a.b #13	ENSGT01000000220856	ENSGT00940000155623.ib.b.b #14	ENSGT00940000155443.d.j #19	ENSGT01090000260040.b.b.b.a.m.a.b.b ##20	ENSGT00940000157612.b.b #22	ENSGT00940000155982.e.b.h #23	ENSGT00390000013305.a.a.c #26	ENSGT00940000156483.h.b.e	ENSGT00390000008642.w.b	ENSGT00940000155634.q.b.d	ENSGT00940000161252.h.k	ENSGT00940000157012.l.d	ENSGT00940000163429.A	ENSGT00940000163429.C.a.b	ENSGT00800000125320	ENSGT00950000183024.a.a.b.r.a	ENSGT00390000001588.o	ENSGT00390000006395.j.a	ENSGT00500000045333	ENSGT00940000155999.e.b.a
Salmo	ANCESTRAL SPECIES	26						ENSGT00940000161652.b.b.p.b.a #7	ENSGT00940000157701.k.a #10	ENSGT00940000156464.mb.a.a #11	ENSGT00940000156714.b.e #12	ENSGT01030000234564.a.a.a.a.b.b.a.b #13	ENSGT01000000220856	ENSGT00940000155734.lb #36	ENSGT00940000155623.ib.b.b #14	ENSGT00940000155443.d.j #19	ENSGT01090000260040.b.b.b.a.m.a.b.b ##20	ENSGT00940000157612.b.b #22	ENSGT00940000155982.e.b.h #23	ENSGT00390000013305.a.a.c #26	ENSGT00940000156483.h.b.e	ENSGT00390000008642.w.b	ENSGT00940000155634.q.b.d	ENSGT00940000161252.h.k	ENSGT00940000157012.l.d	ENSGT00940000163429.A	ENSGT00940000163429.C.a.b	ENSGT00800000125320	ENSGT00950000183024.a.a.b.r.a	ENSGT00390000001588.o	ENSGT00390000006395.j.a	ENSGT00940000177839	ENSGT00940000155999.e.b.a
River trout	MODERN SPECIES	28	hsp90ab1 (ENSSTUG00000040989)	nfkbiaa (ENSSTUG00000040946)	psma6b (ENSSTUG00000040766)	zgc:153383 (ENSSTUG00000040709)	ENSSTUG00000040666	sox11b (ENSSTUG00000040648) #7	ENSSTUG00000040606 #10	id2b (ENSSTUG00000040584) #11	kidins220b (ENSSTUG00000040160) #12	mboat2b (ENSSTUG00000039639) #13	ENSSTUG00000039622	e2f6 (ENSSTUG00000039582) #36	ASAP2 (ENSSTUG00000035969) #14	ENSSTUG00000035845 #19	ENSSTUG00000035820 ##20	GRHL1 (ENSSTUG00000035797) #22	klf11a (ENSSTUG00000035776) #23	RRM2 (ENSSTUG00000035221) #26	zdhhc14 (ENSSTUG00000035173)	tmem242 (ENSSTUG00000035167)	arid1b (ENSSTUG00000034853)	CLDN20 (ENSSTUG00000034819)	ENSSTUG00000034457	ipcef1 (ENSSTUG00000034404)	cnksr3 (ENSSTUG00000034360)	ENSSTUG00000034355	PRKD3 (ENSSTUG00000034207)	ENSSTUG00000034189	ndufaf7 (ENSSTUG00000034102)	ENSSTUG00000034094	ENSSTUG00000034089
Atlantic salmon	MODERN SPECIES	6	slc35b2 (ENSSSAG00000101841)	hsp90ab1 (ENSSSAG00000040057)	IKBA (ENSSSAG00000040872)	ENSSSAG00000040909	ENSSSAG00000040999	ENSSSAG00000041056	sox11b (ENSSSAG00000041119) #7	ENSSSAG00000041128 #10	KIDINS220 (ENSSSAG00000041322) #12	mboat2b (ENSSSAG00000054471) #13	ENSSSAG00000055701	ASAP2 (ENSSSAG00000055876) #14	ENSSSAG00000067159 #19	ENSSSAG00000067168 ##20	ENSSSAG00000084678	GRHL1 (ENSSSAG00000067187) #22	tieg3 (ENSSSAG00000067196) #23	rir2 (ENSSSAG00000067205) #26	zdhhc14 (ENSSSAG00000116994)	TMEM242 (ENSSSAG00000110220)	arid1b (ENSSSAG00000067980)	ENSSSAG00000110650	CLDN20 (ENSSSAG00000112623)	TIAM2 (ENSSSAG00000068052)	ENSSSAG00000068072	ENSSSAG00000068079	ENSSSAG00000068086	PRKD3 (ENSSSAG00000068132)	ENSSSAG00000070053	ENSSSAG00000070058	ENSSSAG00000070063
Oncorhynchus	ANCESTRAL SPECIES	35	ENSGT00940000159120.f.c	ENSGT00940000157927.j	ENSGT01020000230401.a.a.a.c	ENSGT00940000163080.a.e	ENSGT00550000074807.d.a.a.a.b	ENSGT00390000016736.a.j	ENSGT00940000161652.b.b.p.b.a #7	ENSGT00940000157701.k.a #10	ENSGT00940000156464.mb.a.a #11	ENSGT00940000156714.b.e #12	ENSGT01030000234564.a.a.a.a.b.b.a.b #13	ENSGT01000000220856	ENSGT00940000155623.ib.b.b #14	ENSGT00940000155443.d.j #19	ENSGT01090000260040.b.b.b.a.m.a.b.b ##20	ENSGT00940000157612.b.b #22	ENSGT00940000155982.e.b.h #23	ENSGT00390000013305.a.a.c #26	ENSGT00940000156483.h.b.e	ENSGT00940000155634.q.b.d	ENSGT00940000161252.h.k	ENSGT00940000157012.l.d	ENSGT00940000163429.B	ENSGT00940000163429.C.a.b	ENSGT00800000125320	ENSGT00950000183024.a.a.b.r.a	ENSGT00390000001588.o	ENSGT00390000006395.j.a	ENSGT00500000045333	ENSGT00940000155999.e.b.a	ENSGT00940000159137.b.b.d
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000040420	ENSOMYG00000040433	sox11b (ENSOMYG00000040451) #7	ENSOMYG00000063973	ENSOMYG00000040455 #10	ENSOMYG00000054300	id2b (ENSOMYG00000040463) #11	kidins220b (ENSOMYG00000040489) #12	mboat2b (ENSOMYG00000040615) #13	ENSOMYG00000040627	ASAP2 (ENSOMYG00000040908) #14	ENSOMYG00000053723 #19	ENSOMYG00000043141 ##20	ENSOMYG00000069214	ENSOMYG00000064231	GRHL1 (ENSOMYG00000043147) #22	ENSOMYG00000003754	ENSOMYG00000062824	ENSOMYG00000051969	ENSOMYG00000043151 #23	RRM2 (ENSOMYG00000043170) #26	ZDHHC14 (ENSOMYG00000043222)	ARID1B (ENSOMYG00000043253)	CLDN20 (ENSOMYG00000043347)	ENSOMYG00000074547	TIAM2 (ENSOMYG00000043352)	ENSOMYG00000043367	ENSOMYG00000043390	ENSOMYG00000043395	PRKD3 (ENSOMYG00000043521)	ENSOMYG00000053641
Oncorhynchus_a	ANCESTRAL SPECIES	53								ENSGT00940000161652.b.b.p.b.a #7	ENSGT00940000157701.k.a #10	ENSGT00940000156464.mb.a.a #11	ENSGT00940000156714.b.e #12	ENSGT01030000234564.a.a.a.a.b.b.a.b #13	ENSGT00940000155623.ib.b.b #14	ENSGT00940000155443.d.j #19	ENSGT01090000260040.b.b.b.a.m.a.b.b ##20	ENSGT00940000157612.b.b #22	ENSGT00940000155982.e.b.h #23	ENSGT00390000013305.a.a.c #26	ENSGT00940000156483.h.b.e	ENSGT00940000155634.q.b.d	ENSGT00940000161252.h.k	ENSGT00940000157012.l.d	ENSGT00940000163429.B	ENSGT00940000163429.C.a.b	ENSGT00800000125320	ENSGT00950000183024.a.a.b.r.a	ENSGT00390000001588.o	ENSGT00390000006395.j.a	ENSGT00500000045333	ENSGT00940000155999.e.b.a	ENSGT00940000159137.b.b.d
Chinook salmon	MODERN SPECIES	29	slc35b2 (ENSOTSG00005029725)	hsp90ab1 (ENSOTSG00005029732)	nfkbiaa (ENSOTSG00005032290)	psma6b (ENSOTSG00005032296)	zgc:153383 (ENSOTSG00005032327)	ENSOTSG00005032331	ENSOTSG00005032332	sox11b (ENSOTSG00005032334) #7	ENSOTSG00005032335 #10	id2b (ENSOTSG00005032336) #11	kidins220b (ENSOTSG00005032347) #12	mboat2b (ENSOTSG00005032377) #13	ASAP2 (ENSOTSG00005032397) #14	ENSOTSG00005037931 #19	ENSOTSG00005037935 ##20	GRHL1 (ENSOTSG00005037941) #22	klf11a (ENSOTSG00005037944) #23	RRM2 (ENSOTSG00005037946) #26	zdhhc14 (ENSOTSG00005039741)	ENSOTSG00005039742	arid1b (ENSOTSG00005039746)	CLDN20 (ENSOTSG00005039956)	ENSOTSG00005039958	cnksr3 (ENSOTSG00005039971)	ENSOTSG00005040269	PRKD3 (ENSOTSG00005040270)	ndufaf7 (ENSOTSG00005040302)	CEBPZOS (ENSOTSG00005040304)	FOXA2 (ENSOTSG00005040307)	PAX1 (ENSOTSG00005040309)	nkx2.2b (ENSOTSG00005040312)
Coho salmon	MODERN SPECIES	3	slc35b2 (ENSOKIG00005016187)	hsp90ab1 (ENSOKIG00005016242)	nfkbiaa (ENSOKIG00005016989)	psma6b (ENSOKIG00005017010)	zgc:153383 (ENSOKIG00005017044)	ENSOKIG00005017054	sox11b (ENSOKIG00005017067) #7	ENSOKIG00005017070	ENSOKIG00005017085 #10	id2b (ENSOKIG00005017119) #11	kidins220b (ENSOKIG00005017151) #12	mboat2b (ENSOKIG00005017289) #13	ASAP2 (ENSOKIG00005017506) #14	ENSOKIG00005018207 #19	ENSOKIG00005018230 ##20	GRHL1 (ENSOKIG00005018249) #22	ENSOKIG00005018261	klf11a (ENSOKIG00005001936) #23	RRM2 (ENSOKIG00005002061) #26	ZDHHC14 (ENSOKIG00005002341)	ENSOKIG00005002369	ARID1B (ENSOKIG00005002502)	CLDN20 (ENSOKIG00005002784)	TIAM2 (ENSOKIG00005002825)	ENSOKIG00005002958	ENSOKIG00005002996	ENSOKIG00005003030	PRKD3 (ENSOKIG00005003135)	NDUFAF7 (ENSOKIG00005003407)	ENSOKIG00005003425	ENSOKIG00005003432
Huchen	MODERN SPECIES	1884													asap2b (ENSHHUG00000021049)	ENSHHUG00000021632 #19	ENSHHUG00000021678 ##20	GRHL1 (ENSHHUG00000021773) #22	klf11a (ENSHHUG00000021803) #23	RRM2 (ENSHHUG00000021822) #26	ENSHHUG00000022169	zdhhc14 (ENSHHUG00000022173)	tmem242 (ENSHHUG00000022185)	arid1b (ENSHHUG00000022192)	CLDN20 (ENSHHUG00000022251)	TIAM2 (ENSHHUG00000022257)	ENSHHUG00000022293	ENSHHUG00000022307	ENSHHUG00000022310
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	14	sox11a (ENSELUG00000013220) #7	CMPK2 (ENSELUG00000013201) #8	rsad2 (ENSELUG00000013184) #9	rnf144aa (ENSELUG00000013127) #10	ENSELUG00000024674	id2 (ENSELUG00000013072) #11	KIDINS220 (ENSELUG00000013043) #12	MBOAT2 (ENSELUG00000012971) #13	ENSELUG00000032775	ENSELUG00000032565	asap2a (ENSELUG00000012839) #14	itgb1bp1 (ENSELUG00000024673) #16	iah1 (ENSELUG00000012701) #18	adam17a (ENSELUG00000012677) #19	ywhaqb (ENSELUG00000012647) ##20	grhl1 (ENSELUG00000012598) #22	klf11b (ENSELUG00000012527) #23	znf395a (ENSELUG00000012502)	ENSELUG00000012441	KIF13B (ENSELUG00000012362)	hmbox1a (ENSELUG00000012058)	ENSELUG00000012028	ENSELUG00000012002	HNRNPU (ENSELUG00000011966)	EFCAB2 (ENSELUG00000001169)	KIF26B (ENSELUG00000019398)	ENSELUG00000032455	smyd3 (ENSELUG00000019343)	ENSELUG00000031203
Northern pike	MODERN SPECIES	17	ENSELUG00000013370	MDM1 (ENSELUG00000013414)	ENSELUG00000025357	rap1b (ENSELUG00000013516)	nup107 (ENSELUG00000013560)	slc35e3 (ENSELUG00000013570)	mdm2 (ENSELUG00000013606)	cpm (ENSELUG00000013662)	b2ml (ENSELUG00000013704)	cpsf3 (ENSELUG00000013775) #17	ADAM17 (ENSELUG00000013882) #19	ENSELUG00000013909 ##20	ADAM17 (ENSELUG00000026373) #19	ENSELUG00000001295 #19	taf1b (ENSELUG00000000511) #21	GRHL1 (ENSELUG00000014062) #22	klf11a (ENSELUG00000014101) #23	rrm2 (ENSELUG00000014215) #26	LGALS8 (ENSELUG00000001398)	zdhhc14 (ENSELUG00000014314)	tmem242 (ENSELUG00000034510)	arid1b (ENSELUG00000014567)	CLDN20 (ENSELUG00000014633)	TIAM2 (ENSELUG00000014740)	ENSELUG00000014809	cnksr3 (ENSELUG00000014923)	ENSELUG00000014946	PRKD3 (ENSELUG00000014993)	ndufaf7 (ENSELUG00000015064)	cebpz (ENSELUG00000015123)	FOXA2 (ENSELUG00000015136)
Acanthomorphata	ANCESTRAL SPECIES	7	ENSGT00940000164359.b	ENSGT00940000161652.b.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714.a #12	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699.a.b #17	ENSGT00510000048685.g.b	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000164128.b	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b
Cod	MODERN SPECIES	18	sox11a (ENSGMOG00000025561) #7	CMPK2 (ENSGMOG00000010299) #8	rsad2 (ENSGMOG00000010291) #9	rnf144aa (ENSGMOG00000010275) #10	ENSGMOG00000024861	id2a (ENSGMOG00000010271) #11	KIDINS220 (ENSGMOG00000010191) #12	MBOAT2 (ENSGMOG00000010222) #13	asap2a (ENSGMOG00000011249) #14	itgb1bp1 (ENSGMOG00000011241) #16	CPSF3 (ENSGMOG00000011222) #17	ENSGMOG00000035887	iah1 (ENSGMOG00000011208) #18	adam17a (ENSGMOG00000011183) #19	ywhaqb (ENSGMOG00000011175) ##20	grhl1 (ENSGMOG00000011159) #22	KLF11 (ENSGMOG00000022974) #23	ENSGMOG00000029783	ENSGMOG00000011132	ENSGMOG00000023746	ENSGMOG00000011108	ltk (ENSGMOG00000011080)	itpka (ENSGMOG00000011073)	ivd (ENSGMOG00000011064)	BAHD1 (ENSGMOG00000023832)	ccdc32 (ENSGMOG00000011049)	pcmtl (ENSGMOG00000011039)	rpusd2 (ENSGMOG00000023402)	disp2 (ENSGMOG00000010993)	ENSGMOG00000010987	eml1 (ENSGMOG00000010971)
Euacanthomorphacea	ANCESTRAL SPECIES	11	ENSGT00940000164359.b	ENSGT00940000161652.b.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714.a #12	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699.a.b #17	ENSGT00510000048685.g.b	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000164128.b	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b
Percomorphaceae	ANCESTRAL SPECIES	13	ENSGT00940000164359.b	ENSGT00940000161652.b.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714.a #12	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699.a.b #17	ENSGT00510000048685.g.b	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000164128.b	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b
Percomorphaceae_B	ANCESTRAL SPECIES	11	ENSGT00940000164359.b	ENSGT00940000161652.b.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714.a #12	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699.a.b #17	ENSGT00510000048685.g.b	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b
Percomorphaceae_C	ANCESTRAL SPECIES	12	ENSGT00940000164359.b	ENSGT00940000161652.b.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714.a #12	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699.a.b #17	ENSGT00510000048685.g.b	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b
Eupercaria	ANCESTRAL SPECIES	9	ENSGT00940000164359.b	ENSGT00940000161652.b.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714.a #12	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699.a.b #17	ENSGT00510000048685.g.b	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b
Tetraodontidae	ANCESTRAL SPECIES	3	ENSGT00940000159468	ENSGT00940000161652.b.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714.a #12	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699.a.b #17	ENSGT00510000048685.g.b	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b	ENSGT00940000153887.A
Fugu	MODERN SPECIES	11	ENSTRUG00000026998	ENSTRUG00000026501	Sox11 (ENSTRUG00000003243) #7	CMPK2 (ENSTRUG00000021495) #8	rsad2 (ENSTRUG00000002731) #9	rnf144aa (ENSTRUG00000022426) #10	id2a (ENSTRUG00000014552) #11	KIDINS220 (ENSTRUG00000014349) #12	MBOAT2 (ENSTRUG00000014264) #13	asap2a (ENSTRUG00000014081) #14	itgb1bp1 (ENSTRUG00000024666) #16	ENSTRUG00000013899	iah1 (ENSTRUG00000030034) #18	adam17a (ENSTRUG00000013788) #19	ywhaqa (ENSTRUG00000013765) ##20	grhl1 (ENSTRUG00000013628) #22	ENSTRUG00000013598	dnaaf2 (ENSTRUG00000024016)	lrr1 (ENSTRUG00000013544)	ENSTRUG00000013532	RPAP1 (ENSTRUG00000013352)	ltk (ENSTRUG00000013219)	itpka (ENSTRUG00000013180)	ivd (ENSTRUG00000013088)	BAHD1 (ENSTRUG00000013065)	ccdc32 (ENSTRUG00000021950)	pcmtl (ENSTRUG00000025102)	rpusd2 (ENSTRUG00000025880)	disp2 (ENSTRUG00000013025)	ENSTRUG00000013011	eml1 (ENSTRUG00000012821)
Tetraodon	MODERN SPECIES	1	colec11 (ENSTNIG00000017303)	sox11a (ENSTNIG00000017304) #7	CMPK2 (ENSTNIG00000017305) #8	rsad2 (ENSTNIG00000017306) #9	rnf144aa (ENSTNIG00000017307) #10	id2a (ENSTNIG00000017308) #11	KIDINS220 (ENSTNIG00000017309) #12	MBOAT2 (ENSTNIG00000017310) #13	asap2a (ENSTNIG00000017311) #14	itgb1bp1 (ENSTNIG00000017312) #16	CPSF3 (ENSTNIG00000017313) #17	DNAJC30 (ENSTNIG00000017314)	iah1 (ENSTNIG00000017315) #18	adam17a (ENSTNIG00000017316) #19	ywhaqb (ENSTNIG00000004120) ##20	grhl1 (ENSTNIG00000017317) #22	klf11b (ENSTNIG00000017318) #23	ENSTNIG00000000030	ENSTNIG00000017319	lrr1 (ENSTNIG00000017320)	ENSTNIG00000017321	RPAP1 (ENSTNIG00000017322)	ENSTNIG00000017323	itpka (ENSTNIG00000017324)	ivd (ENSTNIG00000017325)	BAHD1 (ENSTNIG00000017326)	ccdc32 (ENSTNIG00000017327)	pcmtl (ENSTNIG00000017328)	rpusd2 (ENSTNIG00000017329)	disp2 (ENSTNIG00000017330)	ENSTNIG00000001166
Eupecaria_A	ANCESTRAL SPECIES	10	ENSGT00940000164359.b	ENSGT00940000161652.b.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714.a #12	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699.a.b #17	ENSGT00510000048685.g.b	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b
Ballan wrasse	MODERN SPECIES	151	colec11 (ENSLBEG00000014219)	sox11a (ENSLBEG00000014198) #7	CMPK2 (ENSLBEG00000014178) #8	rsad2 (ENSLBEG00000014151) #9	rnf144aa (ENSLBEG00000014121) #10	id2a (ENSLBEG00000014100) #11	KIDINS220 (ENSLBEG00000013849) #12	MBOAT2 (ENSLBEG00000013695) #13	asap2a (ENSLBEG00000013596) #14	itgb1bp1 (ENSLBEG00000013544) #16	CPSF3 (ENSLBEG00000013492) #17	DNAJC30 (ENSLBEG00000013458)	iah1 (ENSLBEG00000013431) #18	adam17a (ENSLBEG00000013365) #19	ywhaqb (ENSLBEG00000013306) ##20	grhl1 (ENSLBEG00000013232) #22	klf11b (ENSLBEG00000013189) #23	dnaaf2 (ENSLBEG00000013161)	lrr1 (ENSLBEG00000013147)	ENSLBEG00000013138	ENSLBEG00000013085
Eupecaria_B	ANCESTRAL SPECIES	11	ENSGT00940000164359.b	ENSGT00940000161652.b.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714.a #12	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699.a.b #17	ENSGT00510000048685.g.b	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b
Perciformes	ANCESTRAL SPECIES	12	ENSGT00940000164359.b	ENSGT00940000161652.b.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714.a #12	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699.a.b #17	ENSGT00510000048685.g.b	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b
Perciformes_a	ANCESTRAL SPECIES	10	ENSGT00940000164359.b	ENSGT00940000161652.b.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714.a #12	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699.a.b #17	ENSGT00510000048685.g.b	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000164214.l	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b
Channel bull blenny	MODERN SPECIES	14	myo6b (ENSCGOG00000022238)	colec11 (ENSCGOG00000023415)	sox11a (ENSCGOG00000023417) #7	CMPK2 (ENSCGOG00000023419) #8	rsad2 (ENSCGOG00000023420) #9	rnf144aa (ENSCGOG00000023424) #10	id2a (ENSCGOG00000023437) #11	MBOAT2 (ENSCGOG00000023442) #13	asap2a (ENSCGOG00000023513) #14	itgb1bp1 (ENSCGOG00000023982) #16	CPSF3 (ENSCGOG00000023997) #17	DNAJC30 (ENSCGOG00000002696)	iah1 (ENSCGOG00000002724) #18	adam17a (ENSCGOG00000002865) #19	ywhaqb (ENSCGOG00000004370) ##20	grhl1 (ENSCGOG00000004378) #22	klf11b (ENSCGOG00000004442) #23	ENSCGOG00000004469	lrr1 (ENSCGOG00000004456)	ENSCGOG00000004470	ENSCGOG00000004493	ENSCGOG00000004830	ltk (ENSCGOG00000004835)	itpka (ENSCGOG00000004878)	ENSCGOG00000004886	ivd (ENSCGOG00000004890)	BAHD1 (ENSCGOG00000004900)	ENSCGOG00000004907	ccdc32 (ENSCGOG00000004908)	pcmtl (ENSCGOG00000004910)	rpusd2 (ENSCGOG00000004956)
Pike perch	MODERN SPECIES	5	sox11a (ENSSLUG00000013861) #7	CMPK2 (ENSSLUG00000013856) #8	rsad2 (ENSSLUG00000013832) #9	rnf144aa (ENSSLUG00000013822) #10	ENSSLUG00000013813	id2a (ENSSLUG00000013806) #11	KIDINS220 (ENSSLUG00000013706) #12	MBOAT2 (ENSSLUG00000013633) #13	asap2a (ENSSLUG00000013070) #14	itgb1bp1 (ENSSLUG00000013021) #16	CPSF3 (ENSSLUG00000012454) #17	ENSSLUG00000012398	iah1 (ENSSLUG00000012385) #18	adam17a (ENSSLUG00000012343) #19	ywhaqb (ENSSLUG00000012331) ##20	grhl1 (ENSSLUG00000012323) #22	klf11b (ENSSLUG00000012317) #23	dnaaf2 (ENSSLUG00000012314)	lrr1 (ENSSLUG00000012310)	ENSSLUG00000012305	RPAP1 (ENSSLUG00000012241)	ltk (ENSSLUG00000012092)	itpka (ENSSLUG00000012068)	ivd (ENSSLUG00000012043)	BAHD1 (ENSSLUG00000012029)	ENSSLUG00000012024	ccdc32 (ENSSLUG00000012020)	pcmtl (ENSSLUG00000012011)	rpusd2 (ENSSLUG00000012002)	disp2 (ENSSLUG00000011985)	ENSSLUG00000011979
Cottioidei	ANCESTRAL SPECIES	8	ENSGT00940000164359.b	ENSGT00940000161652.b.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714.a #12	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699.a.b #17	ENSGT00510000048685.g.b	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b
Lumpfish	MODERN SPECIES	14	colec11 (ENSCLMG00005019691)	sox11a (ENSCLMG00005019689) #7	CMPK2 (ENSCLMG00005019688) #8	rsad2 (ENSCLMG00005019686) #9	rnf144aa (ENSCLMG00005019682) #10	id2a (ENSCLMG00005019678) #11	KIDINS220 (ENSCLMG00005019656) #12	MBOAT2 (ENSCLMG00005019260) #13	asap2a (ENSCLMG00005019112) #14	itgb1bp1 (ENSCLMG00005019106) #16	CPSF3 (ENSCLMG00005019097) #17	ENSCLMG00005019095	iah1 (ENSCLMG00005019093) #18	adam17a (ENSCLMG00005018220) #19	ywhaqb (ENSCLMG00005018194) ##20	grhl1 (ENSCLMG00005018181) #22	klf11b (ENSCLMG00005018177) #23	dnaaf2 (ENSCLMG00005018176)	lrr1 (ENSCLMG00005018174)	ENSCLMG00005018170	ENSCLMG00005018162	ltk (ENSCLMG00005018149)	itpka (ENSCLMG00005018148)	ivd (ENSCLMG00005018146)	BAHD1 (ENSCLMG00005018144)	PRLHR (ENSCLMG00005018143)	ccdc32 (ENSCLMG00005018142)	ENSCLMG00005018140	rpusd2 (ENSCLMG00005018136)	disp2 (ENSCLMG00005018132)	ENSCLMG00005018131
Stickleback	MODERN SPECIES	15	colec11 (ENSGACG00000009068)	ENSGACG00000009067	sox11b (ENSGACG00000009065) #7	CMPK2 (ENSGACG00000009050) #8	rsad2 (ENSGACG00000009046) #9	rnf144aa (ENSGACG00000009031) #10	id2a (ENSGACG00000009030) #11	KIDINS220 (ENSGACG00000008998) #12	MBOAT2 (ENSGACG00000008968) #13	asap2a (ENSGACG00000008955) #14	itgb1bp1 (ENSGACG00000008941) #16	CPSF3 (ENSGACG00000008929) #17	iah1 (ENSGACG00000008923) #18	adam17a (ENSGACG00000008913) #19	ywhaqb (ENSGACG00000008849) ##20	grhl1 (ENSGACG00000008845) #22	klf11b (ENSGACG00000008836) #23	lrr1 (ENSGACG00000008822)	ENSGACG00000008818	ENSGACG00000008807	ltk (ENSGACG00000008800)	itpka (ENSGACG00000008795)	ivd (ENSGACG00000008724)	prlh2r (ENSGACG00000008719)	ccdc32 (ENSGACG00000008704)	pcmtl (ENSGACG00000008666)	rpusd2 (ENSGACG00000008656)	disp2 (ENSGACG00000008649)	ENSGACG00000008639	eml1 (ENSGACG00000008621)	evla (ENSGACG00000008613)
Eupecaria_C	ANCESTRAL SPECIES	8	ENSGT00940000164359.b	ENSGT00940000161652.b.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714.a #12	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699.a.b #17	ENSGT00510000048685.g.b	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b	ENSGT00940000153887.A
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	16	ENSGT00940000164359.b	ENSGT00940000161652.b.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714.a #12	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699.a.b #17	ENSGT00510000048685.g.b	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b	ENSGT00940000153887.A
European seabass	MODERN SPECIES	2	ENSDLAG00005000076	MYO6 (ENSDLAG00005023283)	colec11 (ENSDLAG00005023271)	ENSDLAG00005023263	sox11a (ENSDLAG00005023259) #7	CMPK2 (ENSDLAG00005023255) #8	rsad2 (ENSDLAG00005030006) #9	id2a (ENSDLAG00005023242) #11	KIDINS220 (ENSDLAG00005023139) #12	MBOAT2 (ENSDLAG00005022959) #13	asap2a (ENSDLAG00005022506) #14	itgb1bp1 (ENSDLAG00005031190) #16	ENSDLAG00005022276	CPSF3 (ENSDLAG00005033990) #17	adam17a (ENSDLAG00005021725) #19	GRHL1 (ENSDLAG00005021618) #22	ENSDLAG00005029103	ENSDLAG00005031012 #23	ENSDLAG00005021601	ENSDLAG00005021510	ltk (ENSDLAG00005021193)	ENSDLAG00005021176	itpka (ENSDLAG00005028676)	ivd (ENSDLAG00005021129)	BAHD1 (ENSDLAG00005021123)	ENSDLAG00005021116	ccdc32 (ENSDLAG00005028688)	rpusd2 (ENSDLAG00005029510)	disp2 (ENSDLAG00005029831)	ENSDLAG00005021066	eml1 (ENSDLAG00005017073)
Large yellow croaker	MODERN SPECIES	495	ENSLCRG00005012756	sox11a (ENSLCRG00005012759) #7	CMPK2 (ENSLCRG00005012760) #8	Rsad2 (ENSLCRG00005012761) #9	rnf144aa (ENSLCRG00005012763) #10	id2a (ENSLCRG00005012765) #11	KIDINS220 (ENSLCRG00005012769) #12	MBOAT2 (ENSLCRG00005012815) #13	asap2a (ENSLCRG00005013183) #14	itgb1bp1 (ENSLCRG00005013206) #16	CPSF3 (ENSLCRG00005013210) #17	DNAJC30 (ENSLCRG00005013786)	iah1 (ENSLCRG00005013787) #18	adam17a (ENSLCRG00005013789) #19	ywhaqb (ENSLCRG00005014648) ##20	grhl1 (ENSLCRG00005014649) #22	ENSLCRG00005014654	dnaaf2 (ENSLCRG00005014655)	lrr1 (ENSLCRG00005014656)	ENSLCRG00005014659	RPAP1 (ENSLCRG00005014660)	ltk (ENSLCRG00005014681)	itpka (ENSLCRG00005014802)	PNMT (ENSLCRG00005014803)	ivd (ENSLCRG00005014804)	ENSLCRG00005014805	PRLHR (ENSLCRG00005014806)	ccdc32 (ENSLCRG00005014808)	pcmtl (ENSLCRG00005014809)	rpusd2 (ENSLCRG00005014814)	disp2 (ENSLCRG00005014816)
Gilthead seabream	MODERN SPECIES	7	CMPK2 (ENSSAUG00010026241) #8	rsad2 (ENSSAUG00010026238) #9	rnf144aa (ENSSAUG00010026235) #10	ENSSAUG00010026231	ENSSAUG00010026230	KIDINS220 (ENSSAUG00010026205) #12	MBOAT2 (ENSSAUG00010026126) #13	asap2a (ENSSAUG00010026088) #14	ITGB1BP1 (ENSSAUG00010026080) #16	CPSF3 (ENSSAUG00010026070) #17	DNAJC30 (ENSSAUG00010026069)	iah1 (ENSSAUG00010026068) #18	adam17a (ENSSAUG00010026004) #19	ENSSAUG00010025994	id2a (ENSSAUG00010025993) #11	grhl1 (ENSSAUG00010025988) #22	ENSSAUG00010025984	dnaaf2 (ENSSAUG00010025983)	lrr1 (ENSSAUG00010025981)	ENSSAUG00010025980	RPAP1 (ENSSAUG00010025965)	ltk (ENSSAUG00010025825)	itpka (ENSSAUG00010025824)	ivd (ENSSAUG00010025821)	BAHD1 (ENSSAUG00010025818)	prlh2r (ENSSAUG00010025817)	ccdc32 (ENSSAUG00010025816)	pcmtl (ENSSAUG00010025814)	rpusd2 (ENSSAUG00010025813)	disp2 (ENSSAUG00010025811)	ENSSAUG00010025809
Percomorphaceae_D	ANCESTRAL SPECIES	10	ENSGT00940000164359.b	ENSGT00940000161652.b.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714.a #12	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699.a.b #17	ENSGT00510000048685.g.b	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b
Carangaria	ANCESTRAL SPECIES	10	ENSGT00940000164359.b	ENSGT00940000161652.b.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714.a #12	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699.a.b #17	ENSGT00510000048685.g.b	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b
Pleuronectoidei	ANCESTRAL SPECIES	5	ENSGT00940000156078.c	ENSGT00940000159468	ENSGT00940000164359.b	ENSGT00940000161652.b.b #7	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714.a #12	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699.a.b #17	ENSGT00510000048685.g.b	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b
Tongue sole	MODERN SPECIES		mnat1 (ENSCSEG00000001526)	trmt5 (ENSCSEG00000001533)	slc38a6 (ENSCSEG00000001537)	prkcha (ENSCSEG00000001545)	hif1a (ENSCSEG00000001557)	si:dkey-33c12.12 (ENSCSEG00000001584)	ENSCSEG00000001588	tpp1 (ENSCSEG00000001596)	YY1 (ENSCSEG00000001606)	degs2 (ENSCSEG00000001613)	ENSCSEG00000001616 #14	ENSCSEG00000001623	iah1 (ENSCSEG00000001625) #18	adam17a (ENSCSEG00000001636) #19	ywhaqa (ENSCSEG00000001665) ##20	grhl1 (ENSCSEG00000001668) #22	klf11b (ENSCSEG00000001685) #23	lrr1 (ENSCSEG00000001690)	ENSCSEG00000001698	ENSCSEG00000001700	RPAP1 (ENSCSEG00000001707)	ltk (ENSCSEG00000001731)	itpka (ENSCSEG00000001914)	ivd (ENSCSEG00000001922)	ENSCSEG00000001934	PRLHR (ENSCSEG00000001941)	ccdc32 (ENSCSEG00000001943)	pcmtl (ENSCSEG00000001948)	rpusd2 (ENSCSEG00000001953)	disp2 (ENSCSEG00000001957)	sowahcb (ENSCSEG00000001961)
Turbot	MODERN SPECIES	8	colec11 (ENSSMAG00000020438)	ENSSMAG00000020440	SOX11 (ENSSMAG00000020445) #7	ENSSMAG00000022504	rnf144aa (ENSSMAG00000020451) #10	id2a (ENSSMAG00000037449) #11	KIDINS220 (ENSSMAG00000020468) #12	MBOAT2 (ENSSMAG00000020503) #13	asap2a (ENSSMAG00000020510) #14	itgb1bp1 (ENSSMAG00000020525) #16	CPSF3 (ENSSMAG00000020534) #17	ENSSMAG00000020542	iah1 (ENSSMAG00000023064) #18	adam17a (ENSSMAG00000020548) #19	ENSSMAG00000020553 ##20	grhl1 (ENSSMAG00000020554) #22	ENSSMAG00000020566 #23	ENSSMAG00000020583	ENSSMAG00000020573	ENSSMAG00000020592	ENSSMAG00000020594	ltk (ENSSMAG00000020605)	itpka (ENSSMAG00000020615)	ivd (ENSSMAG00000020617)	ENSSMAG00000020620	ENSSMAG00000020621	ccdc32 (ENSSMAG00000020622)	pcmtl (ENSSMAG00000000852)	rpusd2 (ENSSMAG00000000903)	disp2 (ENSSMAG00000021557)	ENSSMAG00000000929
Carangaria_A	ANCESTRAL SPECIES	4	ENSGT00940000164359.b	ENSGT00940000161652.b.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714.a #12	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699.a.b #17	ENSGT00510000048685.g.b	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b
Seriola	ANCESTRAL SPECIES	3	ENSGT00940000164359.b	ENSGT00940000161652.b.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670.e #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714.a #12	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699.a.b #17	ENSGT00510000048685.g.b	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b
Greater amberjack	MODERN SPECIES	62	ENSSDUG00000018077	sox11a (ENSSDUG00000018094) #7	CMPK2 (ENSSDUG00000018105) #8	rsad2 (ENSSDUG00000018119) #9	rnf144aa (ENSSDUG00000018147) #10	id2a (ENSSDUG00000018183) #11	KIDINS220 (ENSSDUG00000018195) #12	MBOAT2 (ENSSDUG00000018300) #13	asap2a (ENSSDUG00000018351) #14	itgb1bp1 (ENSSDUG00000018462) #16	CPSF3 (ENSSDUG00000018498) #17	DNAJC30 (ENSSDUG00000018558)	iah1 (ENSSDUG00000018632) #18	adam17a (ENSSDUG00000018573) #19	ywhaqb (ENSSDUG00000018650) ##20	grhl1 (ENSSDUG00000018671) #22	klf11b (ENSSDUG00000018736) #23	ENSSDUG00000018753	lrr1 (ENSSDUG00000018764)	ENSSDUG00000018787	RPAP1 (ENSSDUG00000018797)	ENSSDUG00000018851	ltk (ENSSDUG00000018875)	itpka (ENSSDUG00000018981)	ivd (ENSSDUG00000018998)	ENSSDUG00000019058	PRLHR (ENSSDUG00000019080)	ccdc32 (ENSSDUG00000019096)	pcmtl (ENSSDUG00000019110)	rpusd2 (ENSSDUG00000019139)	disp2 (ENSSDUG00000019144)
Yellowtail amberjack	MODERN SPECIES	3229	ENSSLDG00000004259	sox11a (ENSSLDG00000004300) #7	CMPK2 (ENSSLDG00000004335) #8	rsad2 (ENSSLDG00000004353) #9	rnf144aa (ENSSLDG00000004405) #10	id2a (ENSSLDG00000004462) #11	KIDINS220 (ENSSLDG00000004570) #12	MBOAT2 (ENSSLDG00000005032) #13	asap2a (ENSSLDG00000005093) #14	itgb1bp1 (ENSSLDG00000005184) #16	CPSF3 (ENSSLDG00000005234) #17	DNAJC30 (ENSSLDG00000005316)	iah1 (ENSSLDG00000005332) #18	adam17a (ENSSLDG00000005376) #19	ywhaqb (ENSSLDG00000005453) ##20	grhl1 (ENSSLDG00000005479) #22	klf11b (ENSSLDG00000005520) #23	ENSSLDG00000005525	lrr1 (ENSSLDG00000005540)	ENSSLDG00000005569	RPAP1 (ENSSLDG00000005587)	ENSSLDG00000005633	ltk (ENSSLDG00000005662)	itpka (ENSSLDG00000005739)	ivd (ENSSLDG00000005789)	ENSSLDG00000005859	PRLHR (ENSSLDG00000005888)	ccdc32 (ENSSLDG00000005899)	pcmtl (ENSSLDG00000005920)	rpusd2 (ENSSLDG00000005938)	disp2 (ENSSLDG00000005950)
Barramundi perch	MODERN SPECIES	171	ENSLCAG00010023229	sox11a (ENSLCAG00010023224) #7	CMPK2 (ENSLCAG00010023220) #8	rsad2 (ENSLCAG00010023211) #9	rnf144aa (ENSLCAG00010023207) #10	id2a (ENSLCAG00010023201) #11	KIDINS220 (ENSLCAG00010023169) #12	MBOAT2 (ENSLCAG00010023139) #13	asap2a (ENSLCAG00010023094) #14	itgb1bp1 (ENSLCAG00010023072) #16	CPSF3 (ENSLCAG00010022901) #17	DNAJC30 (ENSLCAG00010022857)	iah1 (ENSLCAG00010022854) #18	adam17a (ENSLCAG00010022846) #19	ywhaqb (ENSLCAG00010022827) ##20	grhl1 (ENSLCAG00010022815) #22	klf11b (ENSLCAG00010022810) #23	ENSLCAG00010022809	lrr1 (ENSLCAG00010022806)	ENSLCAG00010022803	RPAP1 (ENSLCAG00010022790)	ltk (ENSLCAG00010022736)	itpka (ENSLCAG00010022705)	ivd (ENSLCAG00010022678)	BAHD1 (ENSLCAG00010022662)	PRLHR (ENSLCAG00010022661)	ccdc32 (ENSLCAG00010022659)	pcmtl (ENSLCAG00010022653)	rpusd2 (ENSLCAG00010022649)	disp2 (ENSLCAG00010022646)	ENSLCAG00010022641
Anabantaria	ANCESTRAL SPECIES	10	ENSGT00940000164359.b	ENSGT00940000161652.b.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714.a #12	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699.a.b #17	ENSGT00510000048685.g.b	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b
Anabantoidei	ANCESTRAL SPECIES	9	ENSGT00940000164359.b	ENSGT00940000161652.b.b #7	ENSGT00940000154030.a.b #8	ENSGT00390000013670 #9	ENSGT00940000157701 #10	ENSGT00940000156464 #11	ENSGT00940000156714.a #12	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000155623 #14	ENSGT00390000003990 #16	ENSGT00940000155699.a.b #17	ENSGT00510000048685.g.b	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b
Climbing perch	MODERN SPECIES	13	ENSATEG00000014222	sox11a (ENSATEG00000014241) #7	CMPK2 (ENSATEG00000014256) #8	rsad2 (ENSATEG00000014261) #9	rnf144aa (ENSATEG00000025612) #10	id2a (ENSATEG00000014295) #11	KIDINS220 (ENSATEG00000014330) #12	MBOAT2 (ENSATEG00000014426) #13	asap2a (ENSATEG00000014440) #14	itgb1bp1 (ENSATEG00000014508) #16	CPSF3 (ENSATEG00000014525) #17	ENSATEG00000026609	iah1 (ENSATEG00000014577) #18	adam17a (ENSATEG00000014598) #19	ENSATEG00000014650 ##20	grhl1 (ENSATEG00000014667) #22	ENSATEG00000014722 #23	ENSATEG00000028060	ENSATEG00000014750	ENSATEG00000028018	ENSATEG00000014787	itpka (ENSATEG00000015070)	ivd (ENSATEG00000015078)	ENSATEG00000015131	ENSATEG00000015174	ccdc32 (ENSATEG00000015190)	pcmtl (ENSATEG00000015214)	rpusd2 (ENSATEG00000015242)	disp2 (ENSATEG00000015248)	ENSATEG00000015275	eml1 (ENSATEG00000015288)
Siamese fighting fish	MODERN SPECIES	12	ENSBSLG00000026388	sox11a (ENSBSLG00000026384) #7	CMPK2 (ENSBSLG00000026383) #8	rsad2 (ENSBSLG00000026381) #9	rnf144aa (ENSBSLG00000026379) #10	id2a (ENSBSLG00000026377) #11	KIDINS220 (ENSBSLG00000026360) #12	MBOAT2 (ENSBSLG00000026337) #13	asap2a (ENSBSLG00000026280) #14	itgb1bp1 (ENSBSLG00000026259) #16	CPSF3 (ENSBSLG00000026230) #17	DNAJC30 (ENSBSLG00000026205)	iah1 (ENSBSLG00000026202) #18	adam17a (ENSBSLG00000026081) #19	ywhaqb (ENSBSLG00000026032) ##20	grhl1 (ENSBSLG00000025998) #22	ENSBSLG00000025968	dnaaf2 (ENSBSLG00000025958)	lrr1 (ENSBSLG00000025941)	ENSBSLG00000025768	ENSBSLG00000025687	ltk (ENSBSLG00000025570)	itpka (ENSBSLG00000025560)	ivd (ENSBSLG00000025511)	BAHD1 (ENSBSLG00000025485)	PRLHR (ENSBSLG00000025476)	ccdc32 (ENSBSLG00000025469)	pcmtl (ENSBSLG00000025431)	rpusd2 (ENSBSLG00000025411)	disp2 (ENSBSLG00000025403)	ENSBSLG00000025387
Zig-zag eel	MODERN SPECIES	14	ENSMAMG00000008263	sox11a (ENSMAMG00000008318) #7	CMPK2 (ENSMAMG00000008329) #8	rsad2 (ENSMAMG00000008344) #9	rnf144aa (ENSMAMG00000008366) #10	id2a (ENSMAMG00000008374) #11	KIDINS220 (ENSMAMG00000008395) #12	MBOAT2 (ENSMAMG00000008701) #13	asap2a (ENSMAMG00000008768) #14	itgb1bp1 (ENSMAMG00000026643) #16	CPSF3 (ENSMAMG00000008835) #17	ENSMAMG00000027424	iah1 (ENSMAMG00000008879) #18	adam17a (ENSMAMG00000008896) #19	ENSMAMG00000008932 ##20	grhl1 (ENSMAMG00000008950) #22	ENSMAMG00000008992 #23	ENSMAMG00000000384	ENSMAMG00000000417	ENSMAMG00000000435	ENSMAMG00000000483	ltk (ENSMAMG00000000706)	itpka (ENSMAMG00000000845)	ivd (ENSMAMG00000000871)	ENSMAMG00000000945	ENSMAMG00000000959	ccdc32 (ENSMAMG00000000987)	pcmtl (ENSMAMG00000001017)	rpusd2 (ENSMAMG00000001077)	disp2 (ENSMAMG00000001088)	ENSMAMG00000001128
Ovalentaria	ANCESTRAL SPECIES	10	ENSGT00940000153887.A	ENSGT00390000001205.b	ENSGT00940000159551	ENSGT00420000029802	ENSGT00950000183032.B.b.a	ENSGT00390000014780	ENSGT00940000162008	ENSGT00390000003967.a	ENSGT00940000158100	ENSGT00940000166410	ENSGT00940000164602	ENSGT00390000007594	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00510000048685.g.b	ENSGT00940000155699.a.b #17	ENSGT00390000003990 #16	ENSGT00940000155623 #14	ENSGT01060000248676.b.a.b	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000156714.a #12	ENSGT00940000156464 #11	ENSGT00940000157701 #10	ENSGT00390000013670 #9	ENSGT00940000154030.a.b #8
Atherinomorphae	ANCESTRAL SPECIES	11	ENSGT00940000153887.A	ENSGT00390000001205.b	ENSGT00940000159551	ENSGT00420000029802	ENSGT00950000183032.B.b.a	ENSGT00390000014780	ENSGT00940000162008	ENSGT00390000003967.a	ENSGT00940000158100	ENSGT00940000166410	ENSGT00940000164602	ENSGT00390000007594	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00510000048685.g.b	ENSGT00940000155699.a.b #17	ENSGT00390000003990 #16	ENSGT00940000155623 #14	ENSGT01060000248676.b.a.b	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000156714.a #12	ENSGT00940000156464 #11	ENSGT00940000157701 #10	ENSGT00390000013670 #9	ENSGT00940000154030.a.b #8
Cyprinodontiformes	ANCESTRAL SPECIES	21																ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00510000048685.g.b	ENSGT00940000155699.a.b #17	ENSGT00390000003990 #16	ENSGT00940000155623 #14	ENSGT01060000248676.b.a.b	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000156714.a #12	ENSGT00940000156464 #11	ENSGT00940000157701 #10	ENSGT00390000013670 #9	ENSGT00940000154030.a.b #8
Aplocheiloidei	ANCESTRAL SPECIES	15	ENSGT00940000153887.A	ENSGT00390000001205.b	ENSGT00940000159551	ENSGT00420000029802	ENSGT00950000183032.B.b.a	ENSGT00390000014780	ENSGT00940000162008	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000155443.c #19	ENSGT00390000008069 #18	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00510000048685.g.b	ENSGT00940000155699.a.b #17	ENSGT00390000003990 #16	ENSGT00940000155623 #14	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000156714.a #12	ENSGT00940000156464 #11	ENSGT00940000157701 #10	ENSGT00390000013670 #9	ENSGT00940000154030.a.b #8	ENSGT00940000161652.b.b #7	ENSGT00940000164359.b
Mangrove rivulus	MODERN SPECIES	1	eml1 (ENSKMAG00000006412)	ENSKMAG00000006585	disp2 (ENSKMAG00000006603)	rpusd2 (ENSKMAG00000006618)	pcmtl (ENSKMAG00000006639)	ccdc32 (ENSKMAG00000006672)	PRLHR (ENSKMAG00000006690)	ywhaqb (ENSKMAG00000006715) ##20	adam17a (ENSKMAG00000006736) #19	iah1 (ENSKMAG00000006786) #18	RPAP1 (ENSKMAG00000006842)	ltk (ENSKMAG00000006904)	itpka (ENSKMAG00000007012)	ivd (ENSKMAG00000007064)	ENSKMAG00000007112	grhl1 (ENSKMAG00000007146) #22	klf11b (ENSKMAG00000007225) #23	dnaaf2 (ENSKMAG00000007233)	lrr1 (ENSKMAG00000007271)	ENSKMAG00000007295	CPSF3 (ENSKMAG00000007317) #17	itgb1bp1 (ENSKMAG00000007363) #16	asap2a (ENSKMAG00000007390) #14	MBOAT2 (ENSKMAG00000007430) #13	KIDINS220 (ENSKMAG00000007490) #12	id2a (ENSKMAG00000007700) #11	rnf144aa (ENSKMAG00000007711) #10	rsad2 (ENSKMAG00000007745) #9	CMPK2 (ENSKMAG00000007763) #8	sox11a (ENSKMAG00000007776) #7	ENSKMAG00000007798
Turquoise killifish	MODERN SPECIES	1625	EML1 (ENSNFUG00015016181)	ENSNFUG00015016131	DISP2 (ENSNFUG00015016123)	RPUSD2 (ENSNFUG00015016119)	PCMTL (ENSNFUG00015016091)	C15ORF57 (ENSNFUG00015016077)	PRLHR (ENSNFUG00015015987)	YWHAQ (ENSNFUG00015015956) ##20	ADAM17A (ENSNFUG00015014926) #19	iah1 (ENSNFUG00015014802) #18	RPAP1 (ENSNFUG00015014075)	ltk (ENSNFUG00015020170)	ITPKA (ENSNFUG00015020139)	ivd (ENSNFUG00015020035)	ENSNFUG00015020025	grhl1 (ENSNFUG00015019980) #22	KLF11B (ENSNFUG00015019964) #23	dnaaf2 (ENSNFUG00015019960)	LRR1 (ENSNFUG00015019957)	ENSNFUG00015019955	DNAJC30 (ENSNFUG00015019949)	CPSF3 (ENSNFUG00015019899) #17	ITGB1BP1 (ENSNFUG00015019885) #16	asap2a (ENSNFUG00015011782) #14	MBOAT2A (ENSNFUG00015010505) #13	KIDINS220 (ENSNFUG00015010375) #12	ID2 (ENSNFUG00015010343) #11	ENSNFUG00015010338	RNF144AA (ENSNFUG00015010324) #10	RSAD2 (ENSNFUG00015010312) #9	CMPK2 (ENSNFUG00015010303) #8
Cyprinodontoidei	ANCESTRAL SPECIES	8	ENSGT00940000158233	ENSGT00940000157970	ENSGT00940000166510	ENSGT00940000159599	ENSGT00940000159314	ENSGT00390000017418	ENSGT00940000165326	ENSGT00940000155115.a.b	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT00530000063353.a.a	ENSGT00940000163885	ENSGT00940000165937	ENSGT01060000248589.D	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000155443.c #19	ENSGT00390000008069 #18	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802
Poeciliinae	ANCESTRAL SPECIES	8	ENSGT00940000157970	ENSGT00940000166510	ENSGT00940000159599	ENSGT00940000159314	ENSGT00390000017418	ENSGT00940000165326	ENSGT00940000155115.a.b	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT00530000063353.a.a	ENSGT00940000163885	ENSGT00940000165937	ENSGT01060000248589.D	ENSGT00940000164547.b.b.j	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000155443.c #19	ENSGT00390000008069 #18	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802
Poecilia	ANCESTRAL SPECIES	10	ENSGT00940000157970	ENSGT00940000166510	ENSGT00940000159599	ENSGT00940000159314	ENSGT00390000017418	ENSGT00940000165326	ENSGT00940000155115.a.b	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT00530000063353.a.a	ENSGT00940000163885	ENSGT00940000165937	ENSGT01060000248589.D	ENSGT00940000164547.b.b.j	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000155443.c #19	ENSGT00390000008069 #18	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802
NAME_6	ANCESTRAL SPECIES	100	ENSGT00940000157970	ENSGT00940000166510	ENSGT00940000159599	ENSGT00940000159314	ENSGT00390000017418	ENSGT00940000165326	ENSGT00940000155115.a.b	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT00530000063353.a.a	ENSGT00940000163885	ENSGT00940000165937	ENSGT01060000248589.D	ENSGT00940000164547.b.b.j	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000155443.c #19	ENSGT00390000008069 #18	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802
Sailfin molly	MODERN SPECIES	631															PTAFR (ENSPLAG00000015665)	grhl1 (ENSPLAG00000015632) #22	klf11b (ENSPLAG00000015622) #23	ENSPLAG00000015613	lrr1 (ENSPLAG00000015608)	ywhaqb (ENSPLAG00000015599) ##20	adam17a (ENSPLAG00000015582) #19	iah1 (ENSPLAG00000015496) #18	RPAP1 (ENSPLAG00000015483)
Amazon molly	MODERN SPECIES	373	ENSPFOG00000021786	ENSPFOG00000023997	cnksr1 (ENSPFOG00000002903)	rps6ka1 (ENSPFOG00000003212)	ENSPFOG00000023557	asap3 (ENSPFOG00000004033)	ENSPFOG00000004299	id3 (ENSPFOG00000004375)	ENSPFOG00000004393	ythdf2 (ENSPFOG00000004455)	vgll2b (ENSPFOG00000004514)	ctsl.1 (ENSPFOG00000004569)	qkia (ENSPFOG00000004665)	PTAFR (ENSPFOG00000004760)	ENSPFOG00000024316	grhl1 (ENSPFOG00000004774) #22	klf11b (ENSPFOG00000005130) #23	ENSPFOG00000005156	lrr1 (ENSPFOG00000005163)	ywhaqb (ENSPFOG00000005238) ##20	adam17a (ENSPFOG00000005334) #19	iah1 (ENSPFOG00000005593) #18	RPAP1 (ENSPFOG00000005635)	ltk (ENSPFOG00000005843)	itpka (ENSPFOG00000006592)	ivd (ENSPFOG00000006688)	ENSPFOG00000024027	PRLHR (ENSPFOG00000006785)	ccdc32 (ENSPFOG00000006790)	pcmtl (ENSPFOG00000022641)	rpusd2 (ENSPFOG00000006829)
Guppy	MODERN SPECIES	453	ENSPREG00000019730	ENSPREG00000019711	cnksr1 (ENSPREG00000019680)	rps6ka1 (ENSPREG00000019612)	ENSPREG00000019590	asap3 (ENSPREG00000019515)	ENSPREG00000019480	id3 (ENSPREG00000019472)	ENSPREG00000019448	ythdf2 (ENSPREG00000019412)	vgll2b (ENSPREG00000019396)	ctsl.1 (ENSPREG00000019376)	qkia (ENSPREG00000019356)	PTAFR (ENSPREG00000019324)	ENSPREG00000018916	grhl1 (ENSPREG00000018827) #22	klf11b (ENSPREG00000018779) #23	ENSPREG00000018768	lrr1 (ENSPREG00000018756)	ywhaqb (ENSPREG00000017226) ##20	adam17a (ENSPREG00000016988) #19	iah1 (ENSPREG00000016968) #18	RPAP1 (ENSPREG00000016760)	ENSPREG00000016704	ltk (ENSPREG00000016621)	itpka (ENSPREG00000016599)	ivd (ENSPREG00000016575)	BAHD1 (ENSPREG00000016522)	PRLHR (ENSPREG00000016503)	ccdc32 (ENSPREG00000016466)	pcmtl (ENSPREG00000016451)
Platyfish	MODERN SPECIES	10	ENSXMAG00000013637	cnksr1 (ENSXMAG00000013641)	rps6ka1 (ENSXMAG00000018844)	ENSXMAG00000025820	asap3 (ENSXMAG00000018795)	ENSXMAG00000012568	id3 (ENSXMAG00000018783)	ENSXMAG00000018773	ythdf2 (ENSXMAG00000018758)	iah1 (ENSXMAG00000013243) #18	ENSXMAG00000013247	ctsl.1 (ENSXMAG00000013249)	qkia (ENSXMAG00000013253)	PTAFR (ENSXMAG00000013259)	ENSXMAG00000013260	grhl1 (ENSXMAG00000013267) #22	klf11b (ENSXMAG00000010947) #23	ENSXMAG00000010949	lrr1 (ENSXMAG00000010950)	ywhaqb (ENSXMAG00000002959) ##20	ADAM17 (ENSXMAG00000002960) #19	RPAP1 (ENSXMAG00000013276)	ENSXMAG00000028668	ltk (ENSXMAG00000013305)	itpka (ENSXMAG00000026636)	ivd (ENSXMAG00000013313)	ENSXMAG00000024020	PRLHR (ENSXMAG00000013323)	ccdc32 (ENSXMAG00000013324)	pcmtl (ENSXMAG00000013327)	rpusd2 (ENSXMAG00000021821)
NAME_4	ANCESTRAL SPECIES	18	ENSGT00940000158233	ENSGT00940000157970	ENSGT00940000166510	ENSGT00940000159599	ENSGT00940000159314	ENSGT00390000017418	ENSGT00940000165326	ENSGT00940000155115.a.b	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT00530000063353.a.a	ENSGT00940000163885	ENSGT00940000165937	ENSGT01060000248589.D	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000155443.c #19	ENSGT00390000008069 #18	ENSGT00390000007594	ENSGT00940000164602	ENSGT00940000166410	ENSGT00940000158100	ENSGT00390000003967.a	ENSGT00940000162008	ENSGT00390000014780	ENSGT00950000183032.B.b.a	ENSGT00420000029802
Mummichog	MODERN SPECIES	2212	GRHL3 (ENSFHEG00000006501)	ENSFHEG00000000175	ENSFHEG00000006520	cnksr1 (ENSFHEG00000006540)	rps6ka1 (ENSFHEG00000006637)	ENSFHEG00000006655	asap3 (ENSFHEG00000006693)	ENSFHEG00000006707	id3 (ENSFHEG00000006717)	ENSFHEG00000006743	ythdf2 (ENSFHEG00000000837)	vgll2b (ENSFHEG00000006811)	ctsl.1 (ENSFHEG00000006825)	qkia (ENSFHEG00000006847)	PTAFR (ENSFHEG00000006850)	grhl1 (ENSFHEG00000006910) #22	klf11b (ENSFHEG00000006917) #23	dnaaf2 (ENSFHEG00000006921)	lrr1 (ENSFHEG00000006927)	ywhaqb (ENSFHEG00000006932) ##20	adam17a (ENSFHEG00000007013) #19	iah1 (ENSFHEG00000007050) #18	RPAP1 (ENSFHEG00000007180)	ENSFHEG00000007191	ltk (ENSFHEG00000007265)	itpka (ENSFHEG00000007271)	ivd (ENSFHEG00000007340)	BAHD1 (ENSFHEG00000000912)	si:dkey-202l22.3 (ENSFHEG00000007461)	ccdc32 (ENSFHEG00000007466)	rpusd2 (ENSFHEG00000007518)
Sheepshead minnow	MODERN SPECIES	299										ankrd13c (ENSCVAG00000011506)	cthl (ENSCVAG00000011490)	PTGER3 (ENSCVAG00000011464)	ENSCVAG00000011452	ENSCVAG00000011436	ENSCVAG00000011429	grhl1 (ENSCVAG00000011385) #22	klf11b (ENSCVAG00000011332) #23	ENSCVAG00000011328	lrr1 (ENSCVAG00000011312)	ywhaqb (ENSCVAG00000011290) ##20	adam17a (ENSCVAG00000011267) #19	iah1 (ENSCVAG00000011141) #18	RPAP1 (ENSCVAG00000011121)	ltk (ENSCVAG00000011104)	itpka (ENSCVAG00000010957)	ivd (ENSCVAG00000010929)	ENSCVAG00000000662	PRLHR (ENSCVAG00000010904)	ccdc32 (ENSCVAG00000010885)	pcmtl (ENSCVAG00000010875)	rpusd2 (ENSCVAG00000010848)
Oryzias	ANCESTRAL SPECIES	3	ENSGT00940000159551	ENSGT00420000029802	ENSGT00940000163452.l	ENSGT00940000178447	ENSGT00950000183032.B.b.a	ENSGT00390000014780	ENSGT00940000162008	ENSGT00390000003967.a	ENSGT00940000158100	ENSGT00940000166410	ENSGT00940000164602	ENSGT00390000007594	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00510000048685.g.b	ENSGT00390000003990 #16	ENSGT00940000155623 #14	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000156714.a #12	ENSGT00940000156464 #11	ENSGT00940000157701 #10	ENSGT00390000013670 #9	ENSGT00940000154030.a.b #8	ENSGT00940000161652.b.b #7	ENSGT00940000159468
Oryzias_b	ANCESTRAL SPECIES	12	ENSGT00940000159551	ENSGT00420000029802	ENSGT00940000163452.l	ENSGT00940000178447	ENSGT00950000183032.B.b.a	ENSGT00390000014780	ENSGT00940000162008	ENSGT00390000003967.a	ENSGT00940000158100	ENSGT00940000166410	ENSGT00940000164602	ENSGT00390000007594	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00510000048685.g.b	ENSGT00390000003990 #16	ENSGT00940000155623 #14	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000156714.a #12	ENSGT00940000156464 #11	ENSGT00940000157701 #10	ENSGT00390000013670 #9	ENSGT00940000154030.a.b #8	ENSGT00940000161652.b.b #7	ENSGT00940000159468
Indian medaka	MODERN SPECIES		disp2 (ENSOMEG00000000179)	rpusd2 (ENSOMEG00000007355)	ENSOMEG00000007362	ENSOMEG00000007368	pcmtl (ENSOMEG00000007382)	ccdc32 (ENSOMEG00000007397)	PRLHR (ENSOMEG00000007411)	ENSOMEG00000007464	ivd (ENSOMEG00000007504)	itpka (ENSOMEG00000007544)	ltk (ENSOMEG00000007600)	ENSOMEG00000007729	iah1 (ENSOMEG00000007787) #18	adam17a (ENSOMEG00000007900) #19	ywhaqb (ENSOMEG00000007953) ##20	grhl1 (ENSOMEG00000008000) #22	klf11b (ENSOMEG00000008015) #23	ENSOMEG00000008025	lrr1 (ENSOMEG00000008045)	ENSOMEG00000008058	ENSOMEG00000008064	itgb1bp1 (ENSOMEG00000008093) #16	asap2a (ENSOMEG00000008132) #14	MBOAT2 (ENSOMEG00000008176) #13	id2a (ENSOMEG00000008195) #11	KIDINS220 (ENSOMEG00000008505) #12	rnf144aa (ENSOMEG00000008683) #10	rsad2 (ENSOMEG00000008741) #9	CMPK2 (ENSOMEG00000008757) #8	sox11a (ENSOMEG00000008780) #7	ENSOMEG00000008800
Javanese ricefish	MODERN SPECIES	14	ENSOJAG00000015595	disp2 (ENSOJAG00000015680)	rpusd2 (ENSOJAG00000015727)	ENSOJAG00000015759	ENSOJAG00000015791	pcmtl (ENSOJAG00000015803)	ccdc32 (ENSOJAG00000015862)	PRLHR (ENSOJAG00000015863)	BAHD1 (ENSOJAG00000015881)	ivd (ENSOJAG00000015911)	itpka (ENSOJAG00000016118)	ltk (ENSOJAG00000016198)	iah1 (ENSOJAG00000017276) #18	adam17a (ENSOJAG00000017332) #19	ywhaqb (ENSOJAG00000017980) ##20	grhl1 (ENSOJAG00000018002) #22	ENSOJAG00000018136	DNAAF2 (ENSOJAG00000018144)	lrr1 (ENSOJAG00000018152)	ENSOJAG00000018166	DNAJC30 (ENSOJAG00000018194)	itgb1bp1 (ENSOJAG00000018214) #16	asap2a (ENSOJAG00000018295) #14	MBOAT2 (ENSOJAG00000019109) #13	KIDINS220 (ENSOJAG00000019184) #12	id2a (ENSOJAG00000019329) #11	rnf144aa (ENSOJAG00000019341) #10	rsad2 (ENSOJAG00000019358) #9	CMPK2 (ENSOJAG00000019419) #8	sox11a (ENSOJAG00000019428) #7	colec11 (ENSOJAG00000019439)
Oryzias_a	ANCESTRAL SPECIES	11	ENSGT00390000001205.b	ENSGT00940000159551	ENSGT00420000029802	ENSGT00940000163452.l	ENSGT00950000183032.B.b.a	ENSGT00390000014780	ENSGT00940000162008	ENSGT00390000003967.a	ENSGT00940000158100	ENSGT00940000166410	ENSGT00940000164602	ENSGT00390000007594	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00510000048685.g.b	ENSGT00390000003990 #16	ENSGT00940000155623 #14	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000156714.a #12	ENSGT00940000156464 #11	ENSGT00940000157701 #10	ENSGT00390000013670 #9	ENSGT00940000154030.a.b #8	ENSGT00940000161652.b.b #7	ENSGT00940000159468
Japanese Medaka HdrR	MODERN SPECIES	14	disp2 (ENSORLG00000015526)	rpusd2 (ENSORLG00000015516)	ENSORLG00000024024	pcmtl (ENSORLG00000015512)	ccdc32 (ENSORLG00000023616)	ENSORLG00000015487	ENSORLG00000024334	ivd (ENSORLG00000015483)	itpka (ENSORLG00000015444)	ENSORLG00000029108	ltk (ENSORLG00000015434)	ENSORLG00000015409	iah1 (ENSORLG00000015337) #18	adam17a (ENSORLG00000015321) #19	ywhaqb (ENSORLG00000015250) ##20	grhl1 (ENSORLG00000015232) #22	klf11b (ENSORLG00000015191) #23	dnaaf2 (ENSORLG00000028510)	lrr1 (ENSORLG00000015179)	ENSORLG00000015168	ENSORLG00000015167	itgb1bp1 (ENSORLG00000015163) #16	asap2a (ENSORLG00000015141) #14	ENSORLG00000023641	MBOAT2 (ENSORLG00000015073) #13	KIDINS220 (ENSORLG00000015049) #12	id2a (ENSORLG00000015015) #11	rnf144aa (ENSORLG00000015013) #10	rsad2 (ENSORLG00000020391) #9	CMPK2 (ENSORLG00000025821) #8	sox11a (ENSORLG00000014996) #7
Chinese medaka	MODERN SPECIES	1096	eml1 (ENSOSIG00000008450)	ENSOSIG00000016130	disp2 (ENSOSIG00000016131)	rpusd2 (ENSOSIG00000016133)	ENSOSIG00000016134	pcmtl (ENSOSIG00000016136)	ccdc32 (ENSOSIG00000016138)	PRLHR (ENSOSIG00000016139)	BAHD1 (ENSOSIG00000016141)	ivd (ENSOSIG00000016146)	itpka (ENSOSIG00000016182)	ltk (ENSOSIG00000016190)	iah1 (ENSOSIG00000016374) #18	adam17a (ENSOSIG00000016439) #19	ywhaqb (ENSOSIG00000019697) ##20	grhl1 (ENSOSIG00000019699) #22	klf11b (ENSOSIG00000019704) #23	ENSOSIG00000019705	lrr1 (ENSOSIG00000019706)	asap2a (ENSOSIG00000019707) #14	MBOAT2 (ENSOSIG00000019709) #13	KIDINS220 (ENSOSIG00000019798) #12	id2a (ENSOSIG00000020928) #11
Ovalentaria_B	ANCESTRAL SPECIES	18	ENSGT00940000153887.A	ENSGT00390000001205.b	ENSGT00940000159551	ENSGT00420000029802	ENSGT00950000183032.B.b.a	ENSGT00390000014780	ENSGT00940000162008	ENSGT00390000003967.a	ENSGT00940000158100	ENSGT00940000166410	ENSGT00940000164602	ENSGT00390000007594	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00510000048685.g.b	ENSGT00940000155699.a.b #17	ENSGT00390000003990 #16	ENSGT00940000155623 #14	ENSGT01060000248676.b.a.b	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000156714.a #12	ENSGT00940000156464 #11	ENSGT00940000157701 #10	ENSGT00390000013670 #9	ENSGT00940000154030.a.b #8
Cichlidae	ANCESTRAL SPECIES	22	ENSGT00420000029802	ENSGT00950000183032.B.b.a	ENSGT00390000014780	ENSGT00940000162008	ENSGT00390000003967.a	ENSGT00940000158100	ENSGT00940000166410	ENSGT00940000164602	ENSGT00390000007594	ENSGT00390000008069 #18	ENSGT01030000234566.e.b.a.a.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00510000048685.g.b	ENSGT00940000155699.a.b #17	ENSGT00390000003990 #16	ENSGT00940000155623 #14	ENSGT01060000248676.b.a.b	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000156714.a #12	ENSGT00940000156464 #11	ENSGT00940000157701 #10	ENSGT00390000013670 #9	ENSGT00940000154030.a.b #8
Pseudocrenilabrinae	ANCESTRAL SPECIES	8	ENSGT00420000029802	ENSGT00950000183032.B.b.a	ENSGT00390000014780	ENSGT00940000162008	ENSGT00390000003967.a	ENSGT00940000158100	ENSGT00940000166410	ENSGT00940000164602	ENSGT00390000007594	ENSGT00390000008069 #18	ENSGT01030000234566.e.b.a.a.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00510000048685.g.b	ENSGT00940000155699.a.b #17	ENSGT00390000003990 #16	ENSGT00940000155623 #14	ENSGT01060000248676.b.a.b	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000156714.a #12	ENSGT00940000156464 #11	ENSGT00940000157701 #10	ENSGT00390000013670 #9	ENSGT00940000154030.a.b #8
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	6	ENSGT00420000029802	ENSGT00950000183032.B.b.a	ENSGT00390000014780	ENSGT00940000162008	ENSGT00390000003967.a	ENSGT00940000158100	ENSGT00940000166410	ENSGT00940000164602	ENSGT00390000007594	ENSGT00390000008069 #18	ENSGT01030000234566.e.b.a.a.b	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00510000048685.g.b	ENSGT00940000155699.a.b #17	ENSGT00390000003990 #16	ENSGT00940000155623 #14	ENSGT01060000248676.b.a.b	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000156714.a #12	ENSGT00940000156464 #11	ENSGT00940000157701 #10	ENSGT00390000013670 #9	ENSGT00940000154030.a.b #8
Haplochromini	ANCESTRAL SPECIES	7	ENSGT00420000029802	ENSGT00950000183032.B.b.a	ENSGT00390000014780	ENSGT00940000162008	ENSGT00390000003967.a	ENSGT00940000158100	ENSGT00940000166410	ENSGT00940000164602	ENSGT00390000007594	ENSGT00390000008069 #18	ENSGT00490000044642.a.a.a.a.a.b.b.d	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00510000048685.g.b	ENSGT00940000155699.a.b #17	ENSGT00390000003990 #16	ENSGT00940000155623 #14	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000156714.a #12	ENSGT00940000156464 #11	ENSGT00940000157701 #10	ENSGT00390000013670 #9	ENSGT00940000154030.a.b #8	ENSGT00940000161652.b.b #7	ENSGT00940000164359.b
Burton s mouthbrooder	MODERN SPECIES	1095														adam17a (ENSHBUG00000014164) #19	ywhaqb (ENSHBUG00000014201) ##20	grhl1 (ENSHBUG00000014242) #22	ENSHBUG00000014258	ENSHBUG00000014265	lrr1 (ENSHBUG00000014286)	ENSHBUG00000014293	ENSHBUG00000014306	CPSF3 (ENSHBUG00000014332) #17	itgb1bp1 (ENSHBUG00000014392) #16	ENSHBUG00000014419 #14
Haplochromini_A	ANCESTRAL SPECIES	7	ENSGT00420000029802	ENSGT00950000183032.B.b.a	ENSGT00390000014780	ENSGT00940000162008	ENSGT00390000003967.a	ENSGT00940000158100	ENSGT00940000166410	ENSGT00940000164602	ENSGT00390000007594	ENSGT00390000008069 #18	ENSGT00490000044642.a.a.a.a.a.b.b.d	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000153676.a	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00510000048685.g.b	ENSGT00940000155699.a.b #17	ENSGT00390000003990 #16	ENSGT00940000155623 #14	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000156714.a #12	ENSGT00940000156464 #11	ENSGT00940000157701 #10	ENSGT00390000013670 #9	ENSGT00940000154030.a.b #8	ENSGT00940000161652.b.b #7	ENSGT00940000164359.b
P. nyererei	MODERN SPECIES	305	ENSPNYG00000021566	disp2 (ENSPNYG00000021543)	pcmtl (ENSPNYG00000021521)	rpusd2 (ENSPNYG00000021507)	ccdc32 (ENSPNYG00000021493)	PRLHR (ENSPNYG00000021484)	ENSPNYG00000021472	ivd (ENSPNYG00000021441)	itpka (ENSPNYG00000021427)	ltk (ENSPNYG00000021387)	ENSPNYG00000021343	iah1 (ENSPNYG00000021313) #18	ENSPNYG00000021263	adam17a (ENSPNYG00000021186) #19	ywhaqb (ENSPNYG00000021165) ##20	grhl1 (ENSPNYG00000021143) #22	ENSPNYG00000021117	ENSPNYG00000021095	lrr1 (ENSPNYG00000021083)	ENSPNYG00000021077	CPSF3 (ENSPNYG00000021047) #17	itgb1bp1 (ENSPNYG00000021027) #16	asap2a (ENSPNYG00000020960) #14	MBOAT2 (ENSPNYG00000020920) #13	KIDINS220 (ENSPNYG00000020827) #12	id2a (ENSPNYG00000020798) #11	rnf144aa (ENSPNYG00000020780) #10	rsad2 (ENSPNYG00000020767) #9	CMPK2 (ENSPNYG00000020756) #8	sox11a (ENSPNYG00000020727) #7	ENSPNYG00000020715
Haplochromini_B	ANCESTRAL SPECIES	13	ENSGT00940000159551	ENSGT00420000029802	ENSGT00950000183032.B.b.a	ENSGT00390000014780	ENSGT00940000162008	ENSGT00390000003967.a	ENSGT00940000158100	ENSGT00940000154596.b.m.b.b	ENSGT00940000155825.r.b	ENSGT00940000166410	ENSGT00940000164602	ENSGT00390000007594.e	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.n ##20	ENSGT00940000157612 #22	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00510000048685.g.b	ENSGT00940000155699.a.b #17	ENSGT00390000003990 #16	ENSGT00940000155623 #14	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000156714.a #12	ENSGT00940000156464 #11	ENSGT00940000157701 #10	ENSGT00390000013670 #9	ENSGT00940000154030.a.b #8	ENSGT00940000161652.b.b #7	ENSGT00940000164359.b
Zebra mbuna	MODERN SPECIES	1101	rpusd2 (ENSMZEG00005006947)	pcmtl (ENSMZEG00005006920)	ccdc32 (ENSMZEG00005006894)	PRLHR (ENSMZEG00005006870)	ENSMZEG00005006856	ivd (ENSMZEG00005006807)	ENSMZEG00005006768	ENSMZEG00005006748	itpka (ENSMZEG00005006738)	ltk (ENSMZEG00005006632)	ENSMZEG00005006585	iah1 (ENSMZEG00005006516) #18	ENSMZEG00005006476	adam17a (ENSMZEG00005006451) #19	ywhaqb (ENSMZEG00005006438) ##20	grhl1 (ENSMZEG00005006420) #22	ENSMZEG00005006395	ENSMZEG00005006380	lrr1 (ENSMZEG00005006361)	ENSMZEG00005006350	ENSMZEG00005006331	CPSF3 (ENSMZEG00005006258) #17	itgb1bp1 (ENSMZEG00005006230) #16	asap2a (ENSMZEG00005006144) #14	MBOAT2 (ENSMZEG00005006092) #13	KIDINS220 (ENSMZEG00005005897) #12	id2a (ENSMZEG00005005852) #11	ENSMZEG00005005837	rnf144aa (ENSMZEG00005005823) #10	rsad2 (ENSMZEG00005005804) #9	CMPK2 (ENSMZEG00005005795) #8
Eastern happy	MODERN SPECIES	10	disp2 (ENSACLG00000019549)	rpusd2 (ENSACLG00000019531)	pcmtl (ENSACLG00000019487)	ccdc32 (ENSACLG00000019464)	PRLHR (ENSACLG00000019444)	ENSACLG00000019433	ivd (ENSACLG00000019347)	ENSACLG00000019336	ENSACLG00000019328	CYTH3 (ENSACLG00000019302)	itpka (ENSACLG00000019261)	ltk (ENSACLG00000019181)	ENSACLG00000019107	ENSACLG00000019091 #18	ywhaqb (ENSACLG00000019060) ##20	grhl1 (ENSACLG00000018976) #22	ENSACLG00000018930	ENSACLG00000018923	lrr1 (ENSACLG00000018902)	ENSACLG00000018896	DNAJC30 (ENSACLG00000018883)	CPSF3 (ENSACLG00000018846) #17	itgb1bp1 (ENSACLG00000018819) #16	asap2a (ENSACLG00000018689) #14	MBOAT2 (ENSACLG00000018621) #13	KIDINS220 (ENSACLG00000018395) #12	id2a (ENSACLG00000018370) #11	ENSACLG00000018346	rnf144aa (ENSACLG00000018318) #10	rsad2 (ENSACLG00000018305) #9	CMPK2 (ENSACLG00000018300) #8
Lyretail cichlid	MODERN SPECIES	299	ENSNBRG00000010006	disp2 (ENSNBRG00000010045)	rpusd2 (ENSNBRG00000010070)	pcmtl (ENSNBRG00000010083)	ccdc32 (ENSNBRG00000010101)	PRLHR (ENSNBRG00000010110)	BAHD1 (ENSNBRG00000010126)	ivd (ENSNBRG00000010158)	itpka (ENSNBRG00000010168)	ltk (ENSNBRG00000010198)	ENSNBRG00000010269	iah1 (ENSNBRG00000010337) #18	ENSNBRG00000010350	adam17a (ENSNBRG00000010379) #19	ywhaqb (ENSNBRG00000010401) ##20	grhl1 (ENSNBRG00000010427) #22	klf11b (ENSNBRG00000010457) #23	ENSNBRG00000010465	lrr1 (ENSNBRG00000010478)	ENSNBRG00000010486	DNAJC30 (ENSNBRG00000010503)	CPSF3 (ENSNBRG00000010525) #17	itgb1bp1 (ENSNBRG00000010578) #16	ENSNBRG00000010603 #14	ENSNBRG00000010674	MBOAT2 (ENSNBRG00000010697) #13	KIDINS220 (ENSNBRG00000010767) #12	id2a (ENSNBRG00000010844) #11	rnf144aa (ENSNBRG00000010857) #10	rsad2 (ENSNBRG00000010881) #9	CMPK2 (ENSNBRG00000010902) #8
Nile tilapia	MODERN SPECIES	10	pcmtl (ENSONIG00000020101)	ccdc32 (ENSONIG00000020100)	PRLHR (ENSONIG00000020099)	BAHD1 (ENSONIG00000037833)	ivd (ENSONIG00000020098)	itpka (ENSONIG00000035779)	ltk (ENSONIG00000020096)	ENSONIG00000020095	iah1 (ENSONIG00000032222) #18	ENSONIG00000020094	iah1 (ENSONIG00000020093) #18	nudt22 (ENSONIG00000036618)	ENSONIG00000036047	adam17a (ENSONIG00000003714) #19	ywhaqb (ENSONIG00000003712) ##20	grhl1 (ENSONIG00000003707) #22	klf11 (ENSONIG00000003704) #23	ENSONIG00000003703	lrr1 (ENSONIG00000041270)	ENSONIG00000003699	ENSONIG00000037802	DNAJC30 (ENSONIG00000003697)	CPSF3 (ENSONIG00000003694) #17	itgb1bp1 (ENSONIG00000003692) #16	asap2a (ENSONIG00000003679) #14	MBOAT2 (ENSONIG00000003677) #13	KIDINS220 (ENSONIG00000003667) #12	id2a (ENSONIG00000003666) #11	rnf144aa (ENSONIG00000003661) #10	rsad2 (ENSONIG00000003658) #9	CMPK2 (ENSONIG00000003657) #8
Midas cichlid	MODERN SPECIES	504	ENSACIG00000024031	disp2 (ENSACIG00000024030)	rpusd2 (ENSACIG00000024029)	pcmtl (ENSACIG00000024027)	ccdc32 (ENSACIG00000024024)	PRLHR (ENSACIG00000024022)	ENSACIG00000024020	ivd (ENSACIG00000024018)	itpka (ENSACIG00000024016)	ltk (ENSACIG00000024009)	RPAP1 (ENSACIG00000024002)	iah1 (ENSACIG00000023998) #18	ENSACIG00000023993	adam17a (ENSACIG00000023988) #19	ywhaqb (ENSACIG00000023775) ##20	grhl1 (ENSACIG00000023709) #22	klf11b (ENSACIG00000023687) #23	dnaaf2 (ENSACIG00000023679)	lrr1 (ENSACIG00000023676)	ENSACIG00000023673	ENSACIG00000023669	CPSF3 (ENSACIG00000023663) #17	itgb1bp1 (ENSACIG00000023656) #16	asap2a (ENSACIG00000023651) #14	MBOAT2 (ENSACIG00000023644) #13	KIDINS220 (ENSACIG00000023634) #12	id2a (ENSACIG00000023623) #11	rnf144aa (ENSACIG00000023614) #10	rsad2 (ENSACIG00000023611) #9	CMPK2 (ENSACIG00000023607) #8	sox11a (ENSACIG00000023604) #7
Pomacentridae	ANCESTRAL SPECIES	19	ENSGT00940000153887.A	ENSGT00390000001205.b	ENSGT00940000159551	ENSGT00420000029802	ENSGT00950000183032.B.b.a	ENSGT00390000014780	ENSGT00940000162008	ENSGT00390000003967.a	ENSGT00940000158100	ENSGT00940000166410	ENSGT00940000164602	ENSGT00390000007594	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260061.c.a.d.b.a.b	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00510000048685.g.b	ENSGT00940000155699.a.b #17	ENSGT00390000003990 #16	ENSGT00940000155623 #14	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000156714.a #12	ENSGT00940000156464 #11	ENSGT00940000157701 #10	ENSGT00390000013670 #9	ENSGT00940000154030.a.b #8	ENSGT00940000161652.b.b #7
Pomacentridae_A	ANCESTRAL SPECIES	19	ENSGT00940000153887.A	ENSGT00390000001205.b	ENSGT00940000159551	ENSGT00420000029802	ENSGT00950000183032.B.b.a	ENSGT00390000014780	ENSGT00940000162008	ENSGT00390000003967.a	ENSGT00940000158100	ENSGT00940000166410	ENSGT00940000164602	ENSGT00390000007594	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260061.c.a.d.b.a.b	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00510000048685.g.b	ENSGT00940000155699.a.b #17	ENSGT00390000003990 #16	ENSGT00940000155623 #14	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000156714.a #12	ENSGT00940000156464 #11	ENSGT00940000157701 #10	ENSGT00390000013670 #9	ENSGT00940000154030.a.b #8	ENSGT00940000161652.b.b #7
Amphiprion	ANCESTRAL SPECIES	12	ENSGT00940000153887.A	ENSGT00390000001205.b	ENSGT00940000159551	ENSGT00420000029802	ENSGT00950000183032.B.b.a	ENSGT00390000014780	ENSGT00940000162008	ENSGT00390000003967.a	ENSGT00940000158100	ENSGT00940000166410	ENSGT00940000164602	ENSGT00390000007594	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260061.c.a.d.b.a.b	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00510000048466	ENSGT00940000158830	ENSGT00390000013762.b.b	ENSGT00510000048685.g.b	ENSGT00940000155699.a.b #17	ENSGT00390000003990 #16	ENSGT00940000155623 #14	ENSGT01030000234564.a.a.a.a.b.a #13	ENSGT00940000156714.a #12	ENSGT00940000156464 #11	ENSGT00940000157701 #10	ENSGT00390000013670 #9	ENSGT00940000154030.a.b #8	ENSGT00940000161652.b.b #7
Orange clownfish	MODERN SPECIES	9	eml1 (ENSAPEG00000021817)	ENSAPEG00000021797	disp2 (ENSAPEG00000021768)	rpusd2 (ENSAPEG00000021763)	pcmtl (ENSAPEG00000021714)	ccdc32 (ENSAPEG00000021702)	PRLHR (ENSAPEG00000021688)	ENSAPEG00000021667	ivd (ENSAPEG00000021638)	itpka (ENSAPEG00000021626)	ltk (ENSAPEG00000021553)	RPAP1 (ENSAPEG00000021512)	iah1 (ENSAPEG00000021499) #18	adam17a (ENSAPEG00000021451) #19	ENSAPEG00000021422	grhl1 (ENSAPEG00000021330) #22	klf11b (ENSAPEG00000021311) #23	ENSAPEG00000021304	lrr1 (ENSAPEG00000021284)	ENSAPEG00000021268	ENSAPEG00000021253	CPSF3 (ENSAPEG00000021167) #17	itgb1bp1 (ENSAPEG00000021111) #16	asap2a (ENSAPEG00000021017) #14	MBOAT2 (ENSAPEG00000020881) #13	KIDINS220 (ENSAPEG00000020697) #12	id2a (ENSAPEG00000020671) #11	rnf144aa (ENSAPEG00000020647) #10	rsad2 (ENSAPEG00000020627) #9	CMPK2 (ENSAPEG00000020584) #8	sox11a (ENSAPEG00000020575) #7
Clown anemonefish	MODERN SPECIES	623												RPAP1 (ENSAOCG00000009681)	iah1 (ENSAOCG00000009714) #18	adam17a (ENSAOCG00000009796) #19	ENSAOCG00000009844	grhl1 (ENSAOCG00000009930) #22	klf11b (ENSAOCG00000009957) #23	ENSAOCG00000009963	lrr1 (ENSAOCG00000009990)	ENSAOCG00000010004	ENSAOCG00000010017	CPSF3 (ENSAOCG00000010077) #17	itgb1bp1 (ENSAOCG00000010105) #16	asap2a (ENSAOCG00000010132) #14	MBOAT2 (ENSAOCG00000010155) #13	KIDINS220 (ENSAOCG00000010304) #12	id2a (ENSAOCG00000010346) #11	ENSAOCG00000010360	rnf144aa (ENSAOCG00000010367) #10
Spiny chromis	MODERN SPECIES	49	ENSAPOG00000015927	disp2 (ENSAPOG00000015936)	rpusd2 (ENSAPOG00000000817)	pcmtl (ENSAPOG00000015977)	ccdc32 (ENSAPOG00000015978)	PRLHR (ENSAPOG00000015979)	ENSAPOG00000015982	ivd (ENSAPOG00000015988)	ENSAPOG00000016010	itpka (ENSAPOG00000016045)	ltk (ENSAPOG00000016062)	RPAP1 (ENSAPOG00000016079)	iah1 (ENSAPOG00000016092) #18	adam17a (ENSAPOG00000016199) #19	ENSAPOG00000016212	grhl1 (ENSAPOG00000016287) #22	klf11b (ENSAPOG00000016296) #23	ENSAPOG00000016306	lrr1 (ENSAPOG00000016329)	ENSAPOG00000016368	ENSAPOG00000016385
Bicolor damselfish	MODERN SPECIES	686	ENSSPAG00000003625	ENSSPAG00000003613	disp2 (ENSSPAG00000003585)	rpusd2 (ENSSPAG00000003578)	pcmtl (ENSSPAG00000003536)	ccdc32 (ENSSPAG00000003532)	PRLHR (ENSSPAG00000003514)	ENSSPAG00000003499	ivd (ENSSPAG00000003462)	itpka (ENSSPAG00000003448)	ltk (ENSSPAG00000003359)	RPAP1 (ENSSPAG00000003269)	iah1 (ENSSPAG00000003244) #18	adam17a (ENSSPAG00000003153) #19	ENSSPAG00000003140	grhl1 (ENSSPAG00000003067) #22	klf11b (ENSSPAG00000003047) #23	dnaaf2 (ENSSPAG00000003039)	lrr1 (ENSSPAG00000003023)	ENSSPAG00000003005	ENSSPAG00000002995	CPSF3 (ENSSPAG00000002906) #17	itgb1bp1 (ENSSPAG00000002880) #16
Tiger tail seahorse	MODERN SPECIES	350			sox11a (ENSHCOG00000016265) #7	CMPK2 (ENSHCOG00000016245) #8	rsad2 (ENSHCOG00000016219) #9	rnf144aa (ENSHCOG00000016198) #10	id2a (ENSHCOG00000016190) #11	KIDINS220 (ENSHCOG00000016172) #12	MBOAT2 (ENSHCOG00000016042) #13	asap2a (ENSHCOG00000016011) #14	itgb1bp1 (ENSHCOG00000015971) #16	CPSF3 (ENSHCOG00000015957) #17	ENSHCOG00000015932	iah1 (ENSHCOG00000015854) #18	adam17a (ENSHCOG00000015914) #19	grhl1 (ENSHCOG00000015842) #22	ENSHCOG00000015798	dnaaf2 (ENSHCOG00000015790)	lrr1 (ENSHCOG00000015782)	ENSHCOG00000015776	RPAP1 (ENSHCOG00000015771)	ltk (ENSHCOG00000015756)	itpka (ENSHCOG00000015694)	ivd (ENSHCOG00000015670)	BAHD1 (ENSHCOG00000015643)	ccdc32 (ENSHCOG00000015611)	pcmtl (ENSHCOG00000015605)	rpusd2 (ENSHCOG00000015587)	disp2 (ENSHCOG00000015580)	ENSHCOG00000015560	eml1 (ENSHCOG00000015492)
Pinecone sodierfish	DUPLICATION
Pinecone sodierfish	MODERN SPECIES	14	sox11a (ENSMMDG00005008290) #7	CMPK2 (ENSMMDG00005008293) #8	rsad2 (ENSMMDG00005008298) #9	rnf144aa (ENSMMDG00005008304) #10	ENSMMDG00005008305	id2a (ENSMMDG00005008308) #11	KIDINS220 (ENSMMDG00005008339) #12	MBOAT2 (ENSMMDG00005009539) #13	asap2a (ENSMMDG00005009659) #14	itgb1bp1 (ENSMMDG00005009894) #16	CPSF3 (ENSMMDG00005009911) #17	DNAJC30 (ENSMMDG00005009999)	iah1 (ENSMMDG00005010004) #18	adam17a (ENSMMDG00005010057) #19	ywhaqa (ENSMMDG00005013779) ##20	grhl1 (ENSMMDG00005013786) #22	klf11b (ENSMMDG00005013797) #23	ENSMMDG00005013801	lrr1 (ENSMMDG00005013803)	ENSMMDG00005013806	RPAP1 (ENSMMDG00005013823)	ltk (ENSMMDG00005013968)	itpka (ENSMMDG00005014199)	ivd (ENSMMDG00005014215)	ENSMMDG00005014292	PRLHR (ENSMMDG00005014302)	ccdc32 (ENSMMDG00005014402)	pcmtl (ENSMMDG00005014406)	rpusd2 (ENSMMDG00005014410)	disp2 (ENSMMDG00005014414)	ENSMMDG00005014420
Pinecone sodierfish	MODERN SPECIES	16	zfp36l1b (ENSMMDG00005010708)	rad51b (ENSMMDG00005010705)	ENSMMDG00005010701 #7	allc (ENSMMDG00005010691)	rps7 (ENSMMDG00005010678)	rnaseh1 (ENSMMDG00005010675)	myt1la (ENSMMDG00005010664)	e2f6 (ENSMMDG00005010659) #36	asap2b (ENSMMDG00005010647)	cpsf3 (ENSMMDG00005010604) #17	ADAM17 (ENSMMDG00005003858) #19	CFAP57 (ENSMMDG00005003602)	ENSMMDG00005003593	TAF1B (ENSMMDG00005003582) #21	ENSMMDG00005003574	ENSMMDG00005003573 #22	ENSMMDG00005003569	rrm2 (ENSMMDG00005002616) #26	ENSMMDG00005002546	ENSMMDG00005002541	zdhhc14 (ENSMMDG00005018906)	tmem242 (ENSMMDG00005018905)	arid1b (ENSMMDG00005018880)	CLDN20 (ENSMMDG00005018877)	ENSMMDG00005018874	ENSMMDG00005018871	ENSMMDG00005018870	ENSMMDG00005018867	ENSMMDG00005018864	ENSMMDG00005018861	ENSMMDG00005018859
Otomorpha	ANCESTRAL SPECIES	540												ENSGT00390000003990 #16	ENSGT00390000008069 #18	ENSGT00940000155443.c #19	ENSGT01090000260040.b.b.b.a.m.a.a ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23
Otophysi	ANCESTRAL SPECIES	80	ENSGT00940000157133	ENSGT00390000002143.b.a	ENSGT00390000016811.g	ENSGT00940000164041.a	ENSGT00940000156557.g	ENSGT00940000154790.a.a.b.h	ENSGT00940000157082	ENSGT00730000111187.a.b	ENSGT00940000156560.g	ENSGT00940000166224	ENSGT00940000158680	ENSGT01070000253766.A.a.a.b.a.a	ENSGT00940000154096.b.b.a	ENSGT00390000000455.b	ENSGT01090000260040.b.b.b.a.m.a.a ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00940000157227.h	ENSGT00940000160878.e	ENSGT00940000155495.C.a.b	ENSGT00940000153123.C	ENSGT00530000063787.B.d.b	ENSGT00390000013399	ENSGT00530000063424.a	ENSGT00940000154553.a.b	ENSGT00950000183193.B	ENSGT00940000153431.a.v.a	ENSGT01060000249969	ENSGT00940000156829	ENSGT00390000008402	ENSGT00940000157776.c.a
Characiphysae	ANCESTRAL SPECIES	4	ENSGT00940000158912.j.b	ENSGT00940000156528.c	ENSGT00940000163025.a	ENSGT00940000159326	ENSGT00390000005766.b	ENSGT00530000063950.a.a	ENSGT00940000154746.a.a	ENSGT00940000157120.d	ENSGT00950000182808.a.a.b.a.d	ENSGT00530000064011.d	ENSGT00940000157848.a.a	ENSGT00940000160477	ENSGT00940000155944.f.a	ENSGT00390000000455.b	ENSGT01090000260040.b.b.b.a.m.a.a ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00940000157227.h	ENSGT00940000160878.e	ENSGT00940000155495.C.a.b	ENSGT00940000153123.C	ENSGT00530000063787.B.d.b	ENSGT00390000013399	ENSGT00530000063424.a	ENSGT00940000154553.a.b	ENSGT00950000183193.B	ENSGT00940000153431.a.v.a	ENSGT00940000153431.a.v.b	ENSGT00940000156829	ENSGT00390000008402	ENSGT00940000157776.c.a
Channel catfish	MODERN SPECIES	28	plcb2 (ENSIPUG00000019991)	INAFM2 (ENSIPUG00000020017)	c9h15orf52 (ENSIPUG00000020025)	Mthfd1 (ENSIPUG00000020058)	ENSIPUG00000020169	SLC10A1 (ENSIPUG00000020200)	MAX (ENSIPUG00000020216)	RAB15 (ENSIPUG00000020226)	GPX2 (ENSIPUG00000020245)	SIPA1L1 (ENSIPUG00000020271)	ENSIPUG00000020314	RASGRP1 (ENSIPUG00000020364)	ENSIPUG00000020379	ENSIPUG00000020391	YWHAB (ENSIPUG00000020416) ##20	grhl1 (ENSIPUG00000020433) #22	klf11b (ENSIPUG00000020462) #23	DHX32 (ENSIPUG00000020469)	fank1 (ENSIPUG00000020488)	ADAM12 (ENSIPUG00000020504)	INSYN2A (ENSIPUG00000020543)	mettl10 (ENSIPUG00000020556)	FAM175B (ENSIPUG00000020574)	arhgap5 (ENSIPUG00000020589)	nubpl (ENSIPUG00000020609)	dtd2 (ENSIPUG00000020617)	ENSIPUG00000020623	pomt2 (ENSIPUG00000020640)	lin52 (ENSIPUG00000020685)	vsx2 (ENSIPUG00000020696)	znf839 (ENSIPUG00000020703)
Characiphysae_b	ANCESTRAL SPECIES	20	ENSGT00940000156528.c	ENSGT00940000163025.a	ENSGT00940000159326	ENSGT00390000005766.b	ENSGT00530000063950.a.a	ENSGT00940000154746.a.a	ENSGT00940000157120.d	ENSGT00950000182808.a.a.b.a.d	ENSGT00530000064011.d	ENSGT00940000157848.b	ENSGT00940000157848.a.a	ENSGT00940000160477	ENSGT00940000155944.f.a	ENSGT00390000000455.b	ENSGT01090000260040.b.b.b.a.m.a.a ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00940000157227.h	ENSGT00940000160878.e	ENSGT00940000155495.C.a.b	ENSGT00940000153123.C	ENSGT00530000063787.B.d.b	ENSGT00390000013399	ENSGT00530000063424.a	ENSGT00940000154553.a.b	ENSGT00950000183193.B	ENSGT00940000153431.a.v.a	ENSGT00940000153431.a.v.b	ENSGT00940000156829	ENSGT00390000008402	ENSGT00940000157776.c.a
Electric eel	MODERN SPECIES	128																grhl1 (ENSEEEG00000017401) #22	klf11b (ENSEEEG00000017396) #23	DHX32 (ENSEEEG00000017393)	FANK1 (ENSEEEG00000017391)	ADAM12 (ENSEEEG00000017130)	ENSEEEG00000017115	INSYN2A (ENSEEEG00000017114)	eef1akmt2 (ENSEEEG00000017113)	abraxas2 (ENSEEEG00000017110)	ARHGAP5 (ENSEEEG00000017108)	nubpl (ENSEEEG00000017106)	dtd2 (ENSEEEG00000017104)	ENSEEEG00000017103	DTD2 (ENSEEEG00000017101)	pomt2 (ENSEEEG00000017099)	lin52 (ENSEEEG00000017095)
Characoidei	ANCESTRAL SPECIES	36	ENSGT00940000156528.c	ENSGT00940000163025.a	ENSGT00940000159326	ENSGT00390000005766.b	ENSGT00530000063950.a.a	ENSGT00940000154746.a.a	ENSGT00940000157120.d	ENSGT00950000182808.a.a.b.a.d	ENSGT00530000064011.d	ENSGT00940000157848.a.a	ENSGT00940000160477	ENSGT00940000155944.f.a	ENSGT00940000158910	ENSGT00390000000455.b	ENSGT01090000260040.b.b.b.a.m.a.a ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT00940000157227.h	ENSGT00940000160878.e	ENSGT00940000155495.C.a.b	ENSGT00940000153123.C	ENSGT00530000063787.B.d.b	ENSGT00390000013399	ENSGT00530000063424.a	ENSGT00940000154553.a.b	ENSGT00950000183193.B	ENSGT00940000153431.a.v.a	ENSGT00940000153431.a.v.b	ENSGT00940000156829	ENSGT00390000008402	ENSGT00940000157776.c.a
Mexicana tetra	MODERN SPECIES	24	ANKRD63 (ENSAMXG00000041800)	PLCB2 (ENSAMXG00000032318)	INAFM2 (ENSAMXG00000030666)	ENSAMXG00000042759	mthfd1b (ENSAMXG00000012590)	ENSAMXG00000012607	SLC10A1 (ENSAMXG00000012623)	MAX (ENSAMXG00000037338)	RAB15 (ENSAMXG00000033470)	GPX2 (ENSAMXG00000039316)	ENSAMXG00000012709	ENSAMXG00000012736	RASGRP1 (ENSAMXG00000012754)	gcfc2 (ENSAMXG00000012794)	ywhaqb (ENSAMXG00000031022) ##20	grhl1 (ENSAMXG00000017898) #22	klf11b (ENSAMXG00000011768) #23	DHX32 (ENSAMXG00000011764)	ADAM12 (ENSAMXG00000011729)	ENSAMXG00000041575	INSYN2A (ENSAMXG00000011712)	eef1akmt2 (ENSAMXG00000011707)	abraxas2 (ENSAMXG00000011700)	ARHGAP5 (ENSAMXG00000011695)	nubpl (ENSAMXG00000034089)	dtd2 (ENSAMXG00000039998)	ENSAMXG00000011680	pomt2 (ENSAMXG00000011669)	lin52 (ENSAMXG00000038241)	vsx2 (ENSAMXG00000011659)	ENSAMXG00000011652
Red-bellied piranha	MODERN SPECIES	215														gcfc2 (ENSPNAG00000022665)	ywhaqb (ENSPNAG00000022576) ##20	grhl1 (ENSPNAG00000022549) #22	klf11b (ENSPNAG00000022483) #23	DHX32 (ENSPNAG00000022441)	FANK1 (ENSPNAG00000022428)	ADAM12 (ENSPNAG00000022411)	ENSPNAG00000006246	INSYN2A (ENSPNAG00000022240)	eef1akmt2 (ENSPNAG00000022223)	abraxas2 (ENSPNAG00000022191)	ARHGAP5 (ENSPNAG00000022165)	nubpl (ENSPNAG00000022134)	dtd2 (ENSPNAG00000022065)	ENSPNAG00000022057	pomt2 (ENSPNAG00000022035)	lin52 (ENSPNAG00000021940)	vsx2 (ENSPNAG00000021915)
Cyprinoidei	ANCESTRAL SPECIES	72	ENSGT00940000166718	ENSGT00940000157133	ENSGT00390000002143.b.a	ENSGT00390000016811.g	ENSGT00940000164041.a	ENSGT00940000156557.g	ENSGT00940000154790.a.a.b.h	ENSGT00940000157082	ENSGT00730000111187.a.b.b	ENSGT00940000156560.g	ENSGT00940000166224	ENSGT00940000158680	ENSGT01070000253766.A.a.a.b.a.a	ENSGT00390000000455.b	ENSGT01090000260040.b.b.b.a.m.a.a ##20	ENSGT00940000157612 #22	ENSGT00940000155982.e.a #23	ENSGT01060000253490	ENSGT00940000157227.h	ENSGT00940000160878.e	ENSGT00940000155495.C.a.b	ENSGT00940000153123.C	ENSGT00530000063787.B.d.b	ENSGT00390000013399	ENSGT00530000063424.a	ENSGT00940000154553.a.b	ENSGT00950000183193.B	ENSGT00940000153431.a.v.a	ENSGT00940000156829	ENSGT00390000008402	ENSGT00940000157776.c.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	158	ENSGT00940000166718.a	ENSGT00940000157133.b	ENSGT00390000002143.b.a.g.b	ENSGT00390000016811.g.d	ENSGT00940000164041.a	ENSGT00940000156557.g.a	ENSGT00940000154790.a.a.b.h.b	ENSGT00940000157082.p	ENSGT00730000111187.a.b.b.b	ENSGT00940000156560.g.d	ENSGT00940000166224.a	ENSGT00940000158680.a	ENSGT00940000154096.b.b.a.h.a.a	ENSGT00390000000455.b.h	ENSGT01090000260040.b.b.b.a.m.a.a.b ##20	ENSGT00940000157612.g #22	ENSGT00940000155982.e.a.a #23	ENSGT00940000157227.h	ENSGT00940000160878.e.a	ENSGT00940000155495.C.a.b.i	ENSGT00940000153123.C.d	ENSGT00940000160878.e.b	ENSGT00940000155495.C.a.b.j	ENSGT00940000153123.C.c	ENSGT00530000063787.B.d.b.f	ENSGT00390000013399.r	ENSGT00530000063424.a.m	ENSGT00940000154553.a.b.o	ENSGT00950000183193.B.d	ENSGT00940000156829.d	ENSGT00390000008402.i
Goldfish	MODERN SPECIES	36	zgc:162964 (ENSCARG00000067770)	XDH (ENSCARG00000026293)	ENSCARG00000025049	eif2s1a (ENSCARG00000025029)	EFR3B (ENSCARG00000024897)	pomca (ENSCARG00000024875)	ENSCARG00000024866	snx9a (ENSCARG00000024699)	prox1a (ENSCARG00000024670)	smyd2a (ENSCARG00000024597)	KCNK2 (ENSCARG00000024588)	ENSCARG00000024579	ctsba (ENSCARG00000024534)	eva1a (ENSCARG00000024515)	ywhaqb (ENSCARG00000024494) ##20	grhl1 (ENSCARG00000024405) #22	klf11b (ENSCARG00000024374) #23	ENSCARG00000024363	ADAM12 (ENSCARG00000022871)	ENSCARG00000022818	INSYN2A (ENSCARG00000022815)	abraxas2 (ENSCARG00000022807)	ARHGAP5 (ENSCARG00000022795)	nubpl (ENSCARG00000022718)	dtd2 (ENSCARG00000022704)	lin52 (ENSCARG00000022670)	vsx2 (ENSCARG00000022645)	ENSCARG00000022630	ENSCARG00000022624	ENSCARG00000022622	adprs (ENSCARG00000022607)
Cyprininae_a	ANCESTRAL SPECIES	160	ENSGT00940000166718.a	ENSGT00940000157133.b	ENSGT00390000002143.b.a.g.b	ENSGT00390000016811.g.d	ENSGT00940000164041.a	ENSGT00940000156557.g.a	ENSGT00940000154790.a.a.b.h.b	ENSGT00940000157082.p	ENSGT00730000111187.a.b.b.b	ENSGT00940000156560.g.d	ENSGT00940000166224.a	ENSGT00940000158680.a	ENSGT00940000154096.b.b.a.h.a.a	ENSGT00390000000455.b.h	ENSGT01090000260040.b.b.b.a.m.a.a.b ##20	ENSGT00940000157612.g #22	ENSGT00940000160878.e.b	ENSGT00940000155495.C.a.b.j	ENSGT00940000153123.C.c	ENSGT00530000063787.B.d.b.f	ENSGT00390000013399.r	ENSGT00530000063424.a.m	ENSGT00940000154553.a.b.o	ENSGT00950000183193.B.d	ENSGT00940000153431.a.v.a	ENSGT00940000156829.d	ENSGT00390000008402.i	ENSGT00940000157776.c.a.b	ENSGT00390000002751.h	ENSGT00390000015784.q	ENSGT00390000015369.a
Common carp reference	MODERN SPECIES	4	ENSCCRG00000008596	dnajc27 (ENSCCRG00000008603)	ENSCCRG00000022454	pomca (ENSCCRG00000008745)	ENSCCRG00000057267	ENSCCRG00000008753	snx9a (ENSCCRG00000008760)	prox1a (ENSCCRG00000061921)	smyd2a (ENSCCRG00000026022)	CENPF (ENSCCRG00000027044)	KCNK2 (ENSCCRG00000027064)	ENSCCRG00000024298	ctsba (ENSCCRG00000027069)	eva1a (ENSCCRG00000027099)	gcfc2 (ENSCCRG00000031037)	grhl1 (ENSCCRG00000052831) #22	klf11b (ENSCCRG00000029179) #23	DHX32 (ENSCCRG00000020766)	ENSCCRG00000020768	ADAM12 (ENSCCRG00000020796)	ENSCCRG00000021291	INSYN2A (ENSCCRG00000034423)	ENSCCRG00000075160	eef1akmt2 (ENSCCRG00000034417)	abraxas2 (ENSCCRG00000043883)	ARHGAP5 (ENSCCRG00000076940)	nubpl (ENSCCRG00000062418)	dtd2 (ENSCCRG00000033578)	pomt2 (ENSCCRG00000033231)	lin52 (ENSCCRG00000071634)	vsx2 (ENSCCRG00000033194)
Golden-line barbel	MODERN SPECIES	190	ENSSGRG00000042379	dnajc27 (ENSSGRG00000042406)	EFR3B (ENSSGRG00000042418)	pomca (ENSSGRG00000042419)	snx9a (ENSSGRG00000042431)	prox1a (ENSSGRG00000043063)	smyd2a (ENSSGRG00000043065)	ENSSGRG00000043085	ENSSGRG00000043086	KCNK2 (ENSSGRG00000043090)	ENSSGRG00000043092	ENSSGRG00000043095	eva1a (ENSSGRG00000043096)	gcfc2 (ENSSGRG00000043099)	ywhaqb (ENSSGRG00000043103) ##20	grhl1 (ENSSGRG00000043113) #22	klf11b (ENSSGRG00000043202) #23	DHX32 (ENSSGRG00000043205)	FANK1 (ENSSGRG00000043208)	ADAM12 (ENSSGRG00000043213)	INSYN2A (ENSSGRG00000043214)	eef1akmt2 (ENSSGRG00000043215)	abraxas2 (ENSSGRG00000043218)	ARHGAP5 (ENSSGRG00000043219)	pomt2 (ENSSGRG00000043228)	ENSSGRG00000043536	lin52 (ENSSGRG00000043537)	vsx2 (ENSSGRG00000043549)	ENSSGRG00000043550	ENSSGRG00000043553	cinp (ENSSGRG00000043554)
Cyprininae	ANCESTRAL SPECIES	200	ENSGT00940000166718.b	ENSGT00940000157133.a	ENSGT00390000002143.b.a.g.a	ENSGT00390000016811.g.c	ENSGT00940000156557.g.b	ENSGT00940000154790.a.a.b.h.a	ENSGT00940000157082.o	ENSGT00730000111187.a.b.b.a	ENSGT00940000156560.g.c	ENSGT00940000166224.b	ENSGT00940000158680.b	ENSGT01070000253766.A.a.a.b.a.a	ENSGT00940000154096.b.b.a.h.a.b	ENSGT00390000000455.b.g	ENSGT01090000260040.b.b.b.a.m.a.a.a ##20	ENSGT00940000157612.h #22	ENSGT00940000155982.e.a.b #23	ENSGT01060000253490
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	8	ENSCARG00000050744	pomt2 (ENSCARG00000050626)	ENSCARG00000050585	nubpl (ENSCARG00000050449)	ARHGAP5 (ENSCARG00000069542)	ctsba (ENSCARG00000069527)	ENSCARG00000069523	KCNK2 (ENSCARG00000069519)	grhl1 (ENSCARG00000069517) #22	ywhaqb (ENSCARG00000069514) ##20	gcfc2 (ENSCARG00000069500)	ENSCARG00000069489	eva1a (ENSCARG00000069488)	gcfc2 (ENSCARG00000069467)	ENSCARG00000069465 ##20	grhl1 (ENSCARG00000069455) #22	klf11b (ENSCARG00000069447) #23	DHX32 (ENSCARG00000069424)	FANK1 (ENSCARG00000069407)	ENSCARG00000069399	disp2 (ENSCARG00000069394)	rpusd2 (ENSCARG00000069391)	pcmtl (ENSCARG00000069384)	ccdc32 (ENSCARG00000069379)	prlh2r (ENSCARG00000069376)	BAHD1 (ENSCARG00000069371)	ivd (ENSCARG00000069292)	itpka (ENSCARG00000069283)	ltk (ENSCARG00000069038)	RPAP1 (ENSCARG00000068977)	ENSCARG00000068970
Goldfish	MODERN SPECIES	8	ccdc32 (ENSCARG00000069379)	pcmtl (ENSCARG00000069384)	rpusd2 (ENSCARG00000069391)	disp2 (ENSCARG00000069394)	ENSCARG00000069399	FANK1 (ENSCARG00000069407)	DHX32 (ENSCARG00000069424)	klf11b (ENSCARG00000069447) #23	grhl1 (ENSCARG00000069455) #22	ENSCARG00000069465 ##20	gcfc2 (ENSCARG00000069467)	eva1a (ENSCARG00000069488)	ENSCARG00000069489	gcfc2 (ENSCARG00000069500)	ywhaqb (ENSCARG00000069514) ##20	grhl1 (ENSCARG00000069517) #22	KCNK2 (ENSCARG00000069519)	ENSCARG00000069523	ctsba (ENSCARG00000069527)	ARHGAP5 (ENSCARG00000069542)	nubpl (ENSCARG00000050449)	ENSCARG00000050585	pomt2 (ENSCARG00000050626)	ENSCARG00000050744	DYNLT1 (ENSCARG00000050782)	zmpste24 (ENSCARG00000050800)	ENSCARG00000051074	atp5if1b (ENSCARG00000051081)	rpl13a (ENSCARG00000051111)	commd9 (ENSCARG00000051147)	ENSCARG00000051172
Cyprininae_a	ANCESTRAL SPECIES	186	ENSGT00940000166718.b	ENSGT00940000157133.a	ENSGT00390000002143.b.a.g.a	ENSGT00390000016811.g.c	ENSGT00940000156557.g.b	ENSGT00940000154790.a.a.b.h.a	ENSGT00940000157082.o	ENSGT00730000111187.a.b.b.a	ENSGT00940000156560.g.c	ENSGT00940000166224.b	ENSGT00940000158680.b	ENSGT01070000253766.A.a.a.b.a.a	ENSGT00940000154096.b.b.a.h.a.b	ENSGT00390000000455.b.g	ENSGT01090000260040.b.b.b.a.m.a.a.a ##20	ENSGT00940000157612.h #22	ENSGT00940000155982.e.a.b #23	ENSGT01060000253490	ENSGT00940000155982.e.a.a #23	ENSGT00940000157227.h	ENSGT00940000160878.e.a	ENSGT00940000155495.C.a.b.i	ENSGT00940000153123.C.d
Common carp reference	MODERN SPECIES	30	zgc:162964 (ENSCCRG00000047711)	ENSCCRG00000029439	ENSCCRG00000013319	ENSCCRG00000067536	dnajc27 (ENSCCRG00000058575)	ENSCCRG00000015411	snx9a (ENSCCRG00000041673)	prox1a (ENSCCRG00000061297)	smyd2a (ENSCCRG00000033331)	CENPF (ENSCCRG00000039055)	ENSCCRG00000024315	KCNK2 (ENSCCRG00000043815)	ENSCCRG00000064348	ENSCCRG00000024360	eva1a (ENSCCRG00000024363)	grhl1 (ENSCCRG00000004918) #22	gcfc2 (ENSCCRG00000037792)	ywhaqb (ENSCCRG00000027933) ##20	klf11b (ENSCCRG00000006609) #23	ENSCCRG00000065724	DHX32 (ENSCCRG00000029108)	FANK1 (ENSCCRG00000029066)	ADAM12 (ENSCCRG00000028317)	ENSCCRG00000051911	ENSCCRG00000025702	INSYN2A (ENSCCRG00000082175)	ENSCCRG00000069418	eef1akmt2 (ENSCCRG00000063590)	abraxas2 (ENSCCRG00000070577)	ENSCCRG00000081455	ENSCCRG00000042738
Golden-line barbel	MODERN SPECIES	157	dnajc27 (ENSSGRG00000009943)	EFR3B (ENSSGRG00000008221)	pomca (ENSSGRG00000008174)	ENSSGRG00000008172	snx9a (ENSSGRG00000008164)	prox1a (ENSSGRG00000008163)	smyd2a (ENSSGRG00000008035)	CENPF (ENSSGRG00000008011)	KCNK2 (ENSSGRG00000008010)	ENSSGRG00000008009	ctsba (ENSSGRG00000006701)	ENSSGRG00000006647	eva1a (ENSSGRG00000006639)	gcfc2 (ENSSGRG00000006635)	ywhaqb (ENSSGRG00000006616) ##20	grhl1 (ENSSGRG00000006530) #22	klf11b (ENSSGRG00000006527) #23	DHX32 (ENSSGRG00000006524)	FANK1 (ENSSGRG00000006523)	ADAM12 (ENSSGRG00000006480)	traf4a (ENSSGRG00000006404)	nek8 (ENSSGRG00000006194)	rab34a (ENSSGRG00000006186)	ENSSGRG00000006185	dhrs11b.2 (ENSSGRG00000006183)	dhrs11b.1 (ENSSGRG00000006182)	ca4b (ENSSGRG00000006180)	YWHAG (ENSSGRG00000006174)	camkk1b (ENSSGRG00000006047)	med29 (ENSSGRG00000005995)
Zebrafish	MODERN SPECIES	8	XDH (ENSDARG00000055240)	ENSDARG00000043141	dnajc27 (ENSDARG00000070916)	EFR3B (ENSDARG00000033516)	pomca (ENSDARG00000043135)	snx9a (ENSDARG00000000837)	prox1a (ENSDARG00000055158)	smyd2a (ENSDARG00000055151)	CENPF (ENSDARG00000055133)	KCNK2 (ENSDARG00000055123)	ENSDARG00000075444	ctsba (ENSDARG00000055120)	ENSDARG00000097530	eva1a (ENSDARG00000061405)	gcfc2 (ENSDARG00000079020)	grhl1 (ENSDARG00000061391) #22	ywhaqb (ENSDARG00000023323) ##20	klf11b (ENSDARG00000013794) #23	ENSDARG00000097372	DHX32 (ENSDARG00000079029)	ADAM12 (ENSDARG00000079068)	INSYN2A (ENSDARG00000107576)	eef1akmt2 (ENSDARG00000102144)	abraxas2 (ENSDARG00000098907)	ARHGAP5 (ENSDARG00000061294)	nubpl (ENSDARG00000054821)	dtd2 (ENSDARG00000036775)	pomt2 (ENSDARG00000055027)	lin52 (ENSDARG00000070833)	vsx2 (ENSDARG00000005574)	ENSDARG00000076988
Clupeiformes	ANCESTRAL SPECIES	125												ENSGT00940000155699.a.a #17	ENSGT00940000155443.d #19	ENSGT01090000260040.b.b.b.a.m.b ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982.e.b #23	ENSGT00390000013305.a.a #26	ENSGT00940000155727.o.b	ENSGT00940000156483.h.b.c	ENSGT00390000008642	ENSGT00940000155634.q.b	ENSGT00940000161252.h	ENSGT00940000157012.l	ENSGT00940000163429.B	ENSGT00800000125320	ENSGT00950000183024.a.a.b.r	ENSGT00390000001588	ENSGT00390000006395	ENSGT00500000045333	ENSGT00940000155999.e.b
Atlantic herring	DUPLICATION
Atlantic herring	MODERN SPECIES	5	HTR1B (ENSCHAG00000010400)	colec11 (ENSCHAG00000010426)	ENSCHAG00000010436	sox11a (ENSCHAG00000010481) #7	CMPK2 (ENSCHAG00000010493) #8	rsad2 (ENSCHAG00000010530) #9	rnf144aa (ENSCHAG00000010536) #10	id2a (ENSCHAG00000010550) #11	KIDINS220 (ENSCHAG00000010596) #12	MBOAT2 (ENSCHAG00000011085) #13	asap2a (ENSCHAG00000011321) #14	itgb1bp1 (ENSCHAG00000013894) #16	iah1 (ENSCHAG00000013918) #18	adam17a (ENSCHAG00000013963) #19	ywhaqb (ENSCHAG00000015822) ##20	grhl1 (ENSCHAG00000015880) #22	klf11b (ENSCHAG00000016390) #23	tonsl (ENSCHAG00000016424)	nkl.4 (ENSCHAG00000017239)	ENSCHAG00000017246	ENSCHAG00000017279	STAC (ENSCHAG00000017302)	mtfr1l (ENSCHAG00000017382)	ENSCHAG00000017400	selenon (ENSCHAG00000017419)	znf593 (ENSCHAG00000017473)	RLF (ENSCHAG00000017504)	ENSCHAG00000017512	zmpste24 (ENSCHAG00000017558)	ENSCHAG00000017664	ENSCHAG00000017697
Atlantic herring	MODERN SPECIES	6	ubr7 (ENSCHAG00000006625)	si:dkeyp-55f12.3 (ENSCHAG00000007116)	tmem251 (ENSCHAG00000007127)	itpk1a (ENSCHAG00000007133)	chga (ENSCHAG00000007147)	sel1l (ENSCHAG00000007197)	ahsa1a (ENSCHAG00000008185)	si:dkey-177p2.6 (ENSCHAG00000008260)	cdca4 (ENSCHAG00000008264)	HTR3B (ENSCHAG00000008293)	cpsf3 (ENSCHAG00000008346) #17	ADAM17 (ENSCHAG00000008739) #19	ywhaqa (ENSCHAG00000010543) ##20	ENSCHAG00000010573	taf1b (ENSCHAG00000010599) #21	ENSCHAG00000010607 #22	ENSCHAG00000010621 #22	ENSCHAG00000010638	rrm2 (ENSCHAG00000010654) #26	ENSCHAG00000010944	LGALS8 (ENSCHAG00000011017)	zdhhc14 (ENSCHAG00000011024)	tmem242 (ENSCHAG00000011078)	arid1b (ENSCHAG00000011086)	ENSCHAG00000011131	CLDN20 (ENSCHAG00000011145)	TIAM2 (ENSCHAG00000011173)	ENSCHAG00000011422	cnksr3 (ENSCHAG00000011432)	ENSCHAG00000011517	FOXA2 (ENSCHAG00000012210)
Atlantic herring	MODERN SPECIES	6	si:dkeyp-55f12.3 (ENSCHAG00000007116)	tmem251 (ENSCHAG00000007127)	itpk1a (ENSCHAG00000007133)	chga (ENSCHAG00000007147)	sel1l (ENSCHAG00000007197)	ahsa1a (ENSCHAG00000008185)	si:dkey-177p2.6 (ENSCHAG00000008260)	cdca4 (ENSCHAG00000008264)	HTR3B (ENSCHAG00000008293)	cpsf3 (ENSCHAG00000008346) #17	ADAM17 (ENSCHAG00000008739) #19	ywhaqa (ENSCHAG00000010543) ##20	ENSCHAG00000010573	taf1b (ENSCHAG00000010599) #21	ENSCHAG00000010607 #22	ENSCHAG00000010621 #22	ENSCHAG00000010638	rrm2 (ENSCHAG00000010654) #26	ENSCHAG00000010944	LGALS8 (ENSCHAG00000011017)	zdhhc14 (ENSCHAG00000011024)	tmem242 (ENSCHAG00000011078)	arid1b (ENSCHAG00000011086)	ENSCHAG00000011131	CLDN20 (ENSCHAG00000011145)	TIAM2 (ENSCHAG00000011173)	ENSCHAG00000011422	cnksr3 (ENSCHAG00000011432)	ENSCHAG00000011517	FOXA2 (ENSCHAG00000012210)	PAX1 (ENSCHAG00000012216)
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES		bdkrb1 (ENSDCDG00000013229)	colec11 (ENSDCDG00000013226)	ENSDCDG00000013219	sox11a (ENSDCDG00000015657) #7	CMPK2 (ENSDCDG00000015655) #8	rsad2 (ENSDCDG00000015651) #9	rnf144aa (ENSDCDG00000015646) #10	id2a (ENSDCDG00000015640) #11	KIDINS220 (ENSDCDG00000015612) #12	MBOAT2 (ENSDCDG00000015048) #13	asap2a (ENSDCDG00000013621) #14	itgb1bp1 (ENSDCDG00000013600) #16	iah1 (ENSDCDG00000013594) #18	adam17a (ENSDCDG00000005437) #19	ywhaqb (ENSDCDG00000005379) ##20	grhl1 (ENSDCDG00000005109) #22	klf11b (ENSDCDG00000005057) #23	ENSDCDG00000005055	tonsl (ENSDCDG00000005045)	sav1 (ENSDCDG00000005035)	atl1 (ENSDCDG00000003877)	map4k5 (ENSDCDG00000002874)	cdkl1 (ENSDCDG00000002842)	dmac2l (ENSDCDG00000002841)	l2hgdh (ENSDCDG00000002827)	sos2 (ENSDCDG00000002788)	cdkn3 (ENSDCDG00000002761)	cnih1 (ENSDCDG00000002756)	gmfb (ENSDCDG00000002752)	lgals3a (ENSDCDG00000002750)	synj2bp (ENSDCDG00000002748)
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	5	ENSDCDG00000028164	igf2r (ENSDCDG00000028197)	slc22a2 (ENSDCDG00000028938)	plg (ENSDCDG00000029112)	plg (ENSDCDG00000029147)	ENSDCDG00000029252	ENSDCDG00000029277	GPR31 (ENSDCDG00000029280)	agbl5 (ENSDCDG00000029289)	ENSDCDG00000029299	hlx1 (ENSDCDG00000029301)	cpsf3 (ENSDCDG00000029337) #17	ADAM17 (ENSDCDG00000029412) #19	ywhaqa (ENSDCDG00000029415) ##20	taf1b (ENSDCDG00000029424) #21	GRHL1 (ENSDCDG00000029427) #22	klf11a (ENSDCDG00000029438) #23	RRM2 (ENSDCDG00000029446) #26	LGALS8 (ENSDCDG00000029455)	LGALS8 (ENSDCDG00000029461)	ENSDCDG00000029483	ENSDCDG00000029485	ADAM17 (ENSDCDG00000029492) #19	ywhaqa (ENSDCDG00000029509) ##20	taf1b (ENSDCDG00000029527) #21	ENSDCDG00000029535 #22	ENSDCDG00000029542 #22	RRM2 (ENSDCDG00000029557) #26	zdhhc14 (ENSDCDG00000029629)	tmem242 (ENSDCDG00000029638)	arid1b (ENSDCDG00000029643)
Denticle herring	MODERN SPECIES	5	hlx1 (ENSDCDG00000029301)	cpsf3 (ENSDCDG00000029337) #17	ADAM17 (ENSDCDG00000029412) #19	ywhaqa (ENSDCDG00000029415) ##20	taf1b (ENSDCDG00000029424) #21	GRHL1 (ENSDCDG00000029427) #22	klf11a (ENSDCDG00000029438) #23	RRM2 (ENSDCDG00000029446) #26	LGALS8 (ENSDCDG00000029455)	LGALS8 (ENSDCDG00000029461)	ENSDCDG00000029483	ENSDCDG00000029485	ADAM17 (ENSDCDG00000029492) #19	ywhaqa (ENSDCDG00000029509) ##20	taf1b (ENSDCDG00000029527) #21	ENSDCDG00000029535 #22	ENSDCDG00000029542 #22	RRM2 (ENSDCDG00000029557) #26	zdhhc14 (ENSDCDG00000029629)	tmem242 (ENSDCDG00000029638)	arid1b (ENSDCDG00000029643)	CLDN20 (ENSDCDG00000029751)	TIAM2 (ENSDCDG00000029760)	ENSDCDG00000029817	ENSDCDG00000029829	ENSDCDG00000029944	ENSDCDG00000029946	ENSDCDG00000029948	ENSDCDG00000003178	PRKD3 (ENSDCDG00000003326)	ndufaf7 (ENSDCDG00000004083)
Denticle herring	MODERN SPECIES	5	cpsf3 (ENSDCDG00000029337) #17	ADAM17 (ENSDCDG00000029412) #19	ywhaqa (ENSDCDG00000029415) ##20	taf1b (ENSDCDG00000029424) #21	GRHL1 (ENSDCDG00000029427) #22	klf11a (ENSDCDG00000029438) #23	RRM2 (ENSDCDG00000029446) #26	LGALS8 (ENSDCDG00000029455)	LGALS8 (ENSDCDG00000029461)	ENSDCDG00000029483	ENSDCDG00000029485	ADAM17 (ENSDCDG00000029492) #19	ywhaqa (ENSDCDG00000029509) ##20	taf1b (ENSDCDG00000029527) #21	ENSDCDG00000029535 #22	ENSDCDG00000029542 #22	RRM2 (ENSDCDG00000029557) #26	zdhhc14 (ENSDCDG00000029629)	tmem242 (ENSDCDG00000029638)	arid1b (ENSDCDG00000029643)	CLDN20 (ENSDCDG00000029751)	TIAM2 (ENSDCDG00000029760)	ENSDCDG00000029817	ENSDCDG00000029829	ENSDCDG00000029944	ENSDCDG00000029946	ENSDCDG00000029948	ENSDCDG00000003178	PRKD3 (ENSDCDG00000003326)	ndufaf7 (ENSDCDG00000004083)	cebpz (ENSDCDG00000004236)