Euarchontoglires_A	ANCESTRAL SPECIES	14	ENSGT00940000162396	ENSGT00940000161652	ENSGT00940000154030.a.b	ENSGT00390000013670	ENSGT00940000157701	ENSGT00940000156464	ENSGT00940000156714	ENSGT01030000234564.a.a.a.a.b	ENSGT00940000155623 #16	ENSGT00390000003990 #17	ENSGT00940000155699 #18	ENSGT00390000008069	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845	ENSGT00390000013305.a.a	ENSGT00940000154645.A	ENSGT00950000182995.e.a.a.a	ENSGT00390000007900	ENSGT00390000004263.b	ENSGT00940000155646	ENSGT00940000160213	ENSGT00940000154459.B	ENSGT00940000153916.B	ENSGT01030000234517.D	ENSGT00940000155734	ENSGT00390000008041.C	ENSGT01100000263518.A.a.a.b
Tree shrew	MODERN SPECIES	2529										ENSTBEG00000008035 #16	ITGB1BP1 (ENSTBEG00000001622) #17	CPSF3 (ENSTBEG00000002707) #18	ADAM17 (ENSTBEG00000004343) #19	ENSTBEG00000006122 #20	TAF1B (ENSTBEG00000006430) #21	GRHL1 (ENSTBEG00000007777) #22	KLF11 (ENSTBEG00000008268) #23
Glires	ANCESTRAL SPECIES	13	ENSGT00940000162396	ENSGT00940000161652	ENSGT00940000154030.a.b	ENSGT00390000013670	ENSGT00940000157701	ENSGT00940000156464	ENSGT00940000156714	ENSGT01030000234564.a.a.a.a.b	ENSGT00940000155623 #16	ENSGT00390000003990 #17	ENSGT00940000155699 #18	ENSGT00390000008069	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845	ENSGT00390000013305.a.a	ENSGT00940000154645.A	ENSGT00950000182995.e.a.a.a	ENSGT00390000007900	ENSGT00390000004263.b	ENSGT00940000155646	ENSGT00940000160213	ENSGT00940000154459.B	ENSGT00940000153916.B	ENSGT01030000234517.D	ENSGT00940000155734	ENSGT00390000008041.C	ENSGT01100000263518.A.a.a.b
Rodentia	ANCESTRAL SPECIES	15	ENSGT00940000162396	ENSGT00940000161652	ENSGT00940000154030.a.b	ENSGT00390000013670	ENSGT00940000157701	ENSGT00940000156464	ENSGT00940000156714	ENSGT01030000234564.a.a.a.a.b	ENSGT00940000155623 #16	ENSGT00390000003990 #17	ENSGT00940000155699 #18	ENSGT00390000008069	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845	ENSGT00390000013305.a.a.v	ENSGT00940000154645.A	ENSGT00950000182995.e.a.a.a	ENSGT00390000007900	ENSGT00390000004263.b	ENSGT00940000155646	ENSGT00940000160213	ENSGT00940000154459.B	ENSGT00940000153916.B	ENSGT01030000234517.D	ENSGT00940000155734	ENSGT00390000008041.C	ENSGT01100000263518.A.a.a.b
Rodentia_B	ANCESTRAL SPECIES	14	ENSGT00940000162396	ENSGT00940000161652	ENSGT00940000154030.a.b	ENSGT00390000013670	ENSGT00940000157701	ENSGT00940000156464	ENSGT00940000156714	ENSGT01030000234564.a.a.a.a.b	ENSGT00940000155623 #16	ENSGT00390000003990 #17	ENSGT00940000155699 #18	ENSGT00390000008069	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845	ENSGT00390000013305.a.a.v	ENSGT00940000154645.A	ENSGT00950000182995.e.a.a.a	ENSGT00390000007900	ENSGT00390000004263.b	ENSGT00940000155646	ENSGT00940000160213	ENSGT00940000154459.B	ENSGT00940000153916.B	ENSGT01030000234517.D	ENSGT00940000155734	ENSGT00390000008041.C	ENSGT01100000263518.A.a.a.b
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	339					Rsad2 (ENSDORG00000008537)	Rnf144a (ENSDORG00000010145)	Id2 (ENSDORG00000014815)	Kidins220 (ENSDORG00000014817)	Mboat2 (ENSDORG00000007348)	Asap2 (ENSDORG00000014261) #16	Itgb1bp1 (ENSDORG00000014262) #17	Cpsf3 (ENSDORG00000014263) #18	Adam17 (ENSDORG00000014267) #19	ENSDORG00000028741 #20	Taf1b (ENSDORG00000010154) #21	ENSDORG00000028599 #22	ENSDORG00000024766 #22	ENSDORG00000024620 #23	Rrm2 (ENSDORG00000002514)	Hpcal1 (ENSDORG00000007055)	Odc1 (ENSDORG00000002669)	Nol10 (ENSDORG00000001331)	Atp6v1c2 (ENSDORG00000003593)	Pdia6 (ENSDORG00000003594)	Kcnf1 (ENSDORG00000026132)	ENSDORG00000027660	Pqlc3 (ENSDORG00000025612)	Rock2 (ENSDORG00000008054)	E2f6 (ENSDORG00000013213)	Greb1 (ENSDORG00000009946)	Lpin1 (ENSDORG00000010485)
Kangaroo rat	MODERN SPECIES	339				Rsad2 (ENSDORG00000008537)	Rnf144a (ENSDORG00000010145)	Id2 (ENSDORG00000014815)	Kidins220 (ENSDORG00000014817)	Mboat2 (ENSDORG00000007348)	Asap2 (ENSDORG00000014261) #16	Itgb1bp1 (ENSDORG00000014262) #17	Cpsf3 (ENSDORG00000014263) #18	Adam17 (ENSDORG00000014267) #19	ENSDORG00000028741 #20	Taf1b (ENSDORG00000010154) #21	ENSDORG00000028599 #22	ENSDORG00000024766 #22	ENSDORG00000024620 #23	Rrm2 (ENSDORG00000002514)	Hpcal1 (ENSDORG00000007055)	Odc1 (ENSDORG00000002669)	Nol10 (ENSDORG00000001331)	Atp6v1c2 (ENSDORG00000003593)	Pdia6 (ENSDORG00000003594)	Kcnf1 (ENSDORG00000026132)	ENSDORG00000027660	Pqlc3 (ENSDORG00000025612)	Rock2 (ENSDORG00000008054)	E2f6 (ENSDORG00000013213)	Greb1 (ENSDORG00000009946)	Lpin1 (ENSDORG00000010485)	Trib2 (ENSDORG00000030161)
Myomorpha	ANCESTRAL SPECIES	24	ENSGT00940000162396	ENSGT00940000161652	ENSGT00940000154030.a.b	ENSGT00390000013670	ENSGT00940000157701	ENSGT00940000156464	ENSGT00940000156714	ENSGT01030000234564.a.a.a.a.b	ENSGT00940000155623 #16	ENSGT00390000003990 #17	ENSGT00940000155699 #18	ENSGT00390000008069	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845	ENSGT00390000013305.a.a.v	ENSGT00940000154645.A	ENSGT00950000182995.e.a.a.a	ENSGT00390000007900	ENSGT00390000004263.b	ENSGT00940000155646	ENSGT00940000160213	ENSGT00940000154459.B	ENSGT00940000153916.B	ENSGT01030000234517.D	ENSGT00940000155734	ENSGT00390000008041.C	ENSGT01100000263518.A.a.a.b
Muroidea	ANCESTRAL SPECIES	21	ENSGT00940000162396	ENSGT00940000161652	ENSGT00940000154030.a.b	ENSGT00390000013670	ENSGT00940000157701	ENSGT00940000156464	ENSGT00940000156714	ENSGT01030000234564.a.a.a.a.b	ENSGT00940000155623 #16	ENSGT00390000003990 #17	ENSGT00940000155699 #18	ENSGT00390000008069	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845	ENSGT00390000013305.a.a.v	ENSGT00940000154645.A	ENSGT00950000182995.e.a.a.a	ENSGT00390000007900	ENSGT00390000004263.b	ENSGT00940000155646	ENSGT00940000160213	ENSGT00940000154459.B	ENSGT00940000153916.B	ENSGT01030000234517.D	ENSGT00940000155734	ENSGT00390000008041.C	ENSGT01100000263518.A.a.a.b
Muroidea_A	ANCESTRAL SPECIES	24	ENSGT00940000162396	ENSGT00940000161652	ENSGT00940000154030.a.b	ENSGT00390000013670	ENSGT00940000157701	ENSGT00940000156464	ENSGT00940000156714	ENSGT01030000234564.a.a.a.a.b	ENSGT00940000155623 #16	ENSGT00390000003990 #17	ENSGT00940000155699 #18	ENSGT00390000008069	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845	ENSGT00390000013305.a.a.v	ENSGT00940000154645.A	ENSGT00950000182995.e.a.a.a	ENSGT00390000007900	ENSGT00390000004263.b	ENSGT00940000155646	ENSGT00940000160213	ENSGT00940000154459.B	ENSGT00940000153916.B	ENSGT01030000234517.D	ENSGT00940000155734	ENSGT00390000008041.C	ENSGT01100000263518.A.a.a.b
Cricetidae	ANCESTRAL SPECIES	24	ENSGT00940000162396	ENSGT00940000161652	ENSGT00940000154030.a.b	ENSGT00390000013670	ENSGT00940000157701	ENSGT00940000156464	ENSGT00940000156714	ENSGT01030000234564.a.a.a.a.b	ENSGT00940000155623 #16	ENSGT00390000003990 #17	ENSGT00940000155699 #18	ENSGT00390000008069	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845	ENSGT00390000013305.a.a.v	ENSGT00940000154645.A	ENSGT00950000182995.e.a.a.a	ENSGT00390000007900	ENSGT00390000004263.b	ENSGT00940000155646	ENSGT00940000160213	ENSGT00940000154459.B	ENSGT00940000153916.B	ENSGT01030000234517.D	ENSGT00940000155734	ENSGT00390000008041.C	ENSGT01100000263518.A.a.a.b
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000162396	ENSGT00940000161652	ENSGT00940000154030.a.b	ENSGT00390000013670	ENSGT00940000157701	ENSGT00940000156464	ENSGT00940000156714	ENSGT01030000234564.a.a.a.a.b	ENSGT00940000155623 #16	ENSGT00390000003990 #17	ENSGT00940000155699 #18	ENSGT00390000008069	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845	ENSGT00390000013305.a.a.v	ENSGT00940000154645.A	ENSGT00950000182995.e.a.a.a.g	ENSGT00390000007900	ENSGT00390000004263.b	ENSGT00940000155646	ENSGT00940000160213	ENSGT00940000154459.B	ENSGT00940000153916.B	ENSGT01030000234517.D	ENSGT00940000155734	ENSGT00390000008041.C	ENSGT01100000263518.A.a.a.b
Chinese hamster chok1gshd	MODERN SPECIES	229	Sox11 (ENSCGRG00001007958)	Cmpk2 (ENSCGRG00001018716)	Rsad2 (ENSCGRG00001014337)	Rnf144a (ENSCGRG00001007035)	ENSCGRG00001023880	Id2 (ENSCGRG00001023029)	Kidins220 (ENSCGRG00001016681)	Mboat2 (ENSCGRG00001015841)	Asap2 (ENSCGRG00001022680) #16	Itgb1bp1 (ENSCGRG00001000664) #17	Cpsf3 (ENSCGRG00001013134) #18	Iah1 (ENSCGRG00001019624)	Adam17 (ENSCGRG00001024922) #19	Ywhaq (ENSCGRG00001024724) ##20	ENSCGRG00001018516 #21	Grhl1 (ENSCGRG00001024970) #22	Klf11 (ENSCGRG00001018478) #23	Cys1 (ENSCGRG00001013951)	Rrm2 (ENSCGRG00001007841)	Hpcal1 (ENSCGRG00001023170)	ENSCGRG00001015979	Nol10 (ENSCGRG00001009928)	Atp6v1c2 (ENSCGRG00001021615)	Pdia6 (ENSCGRG00001017472)	Kcnf1 (ENSCGRG00001014274)	2410004P03Rik (ENSCGRG00001003389)	Pqlc3 (ENSCGRG00001018327)	Rock2 (ENSCGRG00001016725)	E2f6 (ENSCGRG00001013963)	Greb1 (ENSCGRG00001018970)	Ntsr2 (ENSCGRG00001012327)
Golden Hamster	MODERN SPECIES	737	ENSMAUG00000010849	Sox11 (ENSMAUG00000016656)	Cmpk2 (ENSMAUG00000017501)	Rsad2 (ENSMAUG00000008669)	Rnf144a (ENSMAUG00000014880)	Id2 (ENSMAUG00000012468)	Kidins220 (ENSMAUG00000011599)	Mboat2 (ENSMAUG00000005505)	Asap2 (ENSMAUG00000001240) #16	Itgb1bp1 (ENSMAUG00000017998) #17	Cpsf3 (ENSMAUG00000000166) #18	Iah1 (ENSMAUG00000018865)	Adam17 (ENSMAUG00000015291) #19	ENSMAUG00000017035 #20	Taf1b (ENSMAUG00000013477) #21	Grhl1 (ENSMAUG00000013649) #22	ENSMAUG00000016595
Cricetidae_B	ANCESTRAL SPECIES	43	ENSGT00940000162396	ENSGT00940000161652	ENSGT00940000154030.a.b	ENSGT00390000013670	ENSGT00940000157701	ENSGT00940000156464	ENSGT00940000156714	ENSGT01030000234564.a.a.a.a.b	ENSGT00940000155623 #16	ENSGT00390000003990 #17	ENSGT00940000155699 #18	ENSGT00390000008069	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845	ENSGT00390000013305.a.a.v	ENSGT00940000154645.A	ENSGT00950000182995.e.a.a.a	ENSGT00390000007900	ENSGT00390000004263.b	ENSGT00940000155646	ENSGT00940000160213	ENSGT00940000154459.B	ENSGT00940000153916.B	ENSGT01030000234517.D	ENSGT00940000155734	ENSGT00390000008041.C	ENSGT01100000263518.A.a.a.b
Northern American deer mouse	MODERN SPECIES	14	ENSPEMG00000022353	Sox11 (ENSPEMG00000014211)	Cmpk2 (ENSPEMG00000009342)	Rsad2 (ENSPEMG00000008928)	Rnf144a (ENSPEMG00000008311)	Id2 (ENSPEMG00000006926)	Kidins220 (ENSPEMG00000002148)	Mboat2 (ENSPEMG00000000110)	Asap2 (ENSPEMG00000016930) #16	Itgb1bp1 (ENSPEMG00000012447) #17	Cpsf3 (ENSPEMG00000017668) #18	Iah1 (ENSPEMG00000016641)	Adam17 (ENSPEMG00000015840) #19	ENSPEMG00000027877 #20	Taf1b (ENSPEMG00000013642) #21	Grhl1 (ENSPEMG00000012157) #22	Klf11 (ENSPEMG00000011311) #23	Cys1 (ENSPEMG00000025881)	Rrm2 (ENSPEMG00000010359)	Hpcal1 (ENSPEMG00000025119)	Nol10 (ENSPEMG00000008676)	Atp6v1c2 (ENSPEMG00000007660)	Pdia6 (ENSPEMG00000002821)	Kcnf1 (ENSPEMG00000013250)	ENSPEMG00000025861	Pqlc3 (ENSPEMG00000020282)	Rock2 (ENSPEMG00000020257)	E2f6 (ENSPEMG00000020192)	Greb1 (ENSPEMG00000020144)	Ntsr2 (ENSPEMG00000007290)	Lpin1 (ENSPEMG00000005628)
Prairie vole	MODERN SPECIES	93		Cmpk2 (ENSMOCG00000000423)	ENSMOCG00000020673	Rnf144a (ENSMOCG00000000314)	ENSMOCG00000012398	Id2 (ENSMOCG00000002908)	Kidins220 (ENSMOCG00000011232)	Mboat2 (ENSMOCG00000021674)	Asap2 (ENSMOCG00000019749) #16	Itgb1bp1 (ENSMOCG00000017072) #17	Cpsf3 (ENSMOCG00000020067) #18	Iah1 (ENSMOCG00000017872)	Adam17 (ENSMOCG00000010700) #19	Ywhaq (ENSMOCG00000020316) ##20	Taf1b (ENSMOCG00000005916) #21	Grhl1 (ENSMOCG00000019210) #22	ENSMOCG00000003070	ENSMOCG00000014995 #23	Cys1 (ENSMOCG00000017656)	ENSMOCG00000018114	ENSMOCG00000010909	Hpcal1 (ENSMOCG00000014411)	ENSMOCG00000010314	Nol10 (ENSMOCG00000021564)	Atp6v1c2 (ENSMOCG00000019580)	Pdia6 (ENSMOCG00000014991)	Kcnf1 (ENSMOCG00000002002)	2410004P03Rik (ENSMOCG00000005186)	Pqlc3 (ENSMOCG00000020689)	Rock2 (ENSMOCG00000004291)	ENSMOCG00000019419
Murinae	ANCESTRAL SPECIES	8	ENSGT00940000154459.B	ENSGT00940000160213	ENSGT00940000155646	ENSGT00390000004263.b	ENSGT00390000007900	ENSGT00950000182995.e.a.a.a	ENSGT00940000154645.A	ENSGT01060000248676	ENSGT00940000155623 #16	ENSGT00390000003990 #17	ENSGT00940000155699 #18	ENSGT00390000008069	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845	ENSGT00390000013305.a.a.v	ENSGT01030000234564.a.a.a.a.b	ENSGT00940000156714	ENSGT00940000156464	ENSGT00940000157701	ENSGT00390000013670	ENSGT00940000154030.a.b	ENSGT00940000161652	ENSGT00940000162396	ENSGT00390000001793	ENSGT00940000159468	ENSGT00390000014122.i.b.a.b	ENSGT00390000003466
Mus	ANCESTRAL SPECIES	10	ENSGT00940000153916.B	ENSGT00940000154459.B	ENSGT00940000160213	ENSGT00940000155646	ENSGT00390000004263.b	ENSGT00390000007900	ENSGT00950000182995.e.a.a.a	ENSGT01060000248676	ENSGT00940000155623 #16	ENSGT00390000003990 #17	ENSGT00940000155699 #18	ENSGT00390000008069	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845	ENSGT00390000013305.a.a.v	ENSGT01030000234564.a.a.a.a.b	ENSGT00940000156714	ENSGT00940000156464	ENSGT00940000157701	ENSGT00390000013670	ENSGT00940000154030.a.b	ENSGT00940000161652	ENSGT00940000162396	ENSGT00390000001793	ENSGT00940000159468	ENSGT00390000014122.i.b.a.b	ENSGT00390000003466
Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000153916.B.c	ENSGT00940000154459.B	ENSGT00940000160213	ENSGT00940000155646	ENSGT00390000004263.b	ENSGT00390000007900	ENSGT00950000182995.e.a.a.a.e	ENSGT01060000248676	ENSGT00940000155623 #16	ENSGT00390000003990 #17	ENSGT00940000155699 #18	ENSGT00390000008069	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845	ENSGT00390000013305.a.a.v	ENSGT01030000234564.a.a.a.a.b	ENSGT00940000156714	ENSGT00940000156464	ENSGT00940000157701	ENSGT00390000013670	ENSGT00940000154030.a.b	ENSGT00940000161652	ENSGT00940000162396	ENSGT00390000001793	ENSGT00940000159468	ENSGT00390000014122.i.b.a.b	ENSGT00390000003466
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000154459.B	ENSGT00940000160213	ENSGT00940000155646	ENSGT00390000004263.b	ENSGT00390000007900	ENSGT00950000182995.e.a.a.a.e	ENSGT00940000154645.A	ENSGT01060000248676	ENSGT00940000155623 #16	ENSGT00390000003990 #17	ENSGT00940000155699 #18	ENSGT00390000008069	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845	ENSGT00390000013305.a.a.v	ENSGT01030000234564.a.a.a.a.b	ENSGT00940000156714	ENSGT00940000156464	ENSGT00940000157701	ENSGT00390000013670	ENSGT00940000154030.a.b	ENSGT00940000161652	ENSGT00940000162396	ENSGT00390000001793	ENSGT00940000159468	ENSGT00390000014122.i.b.a.b	ENSGT00390000003466
Mouse	MODERN SPECIES	3	Pdia6 (ENSMUSG00000020571)	Atp6v1c2 (ENSMUSG00000020566)	Nol10 (ENSMUSG00000061458)	Odc1 (ENSMUSG00000011179)	Hpcal1 (ENSMUSG00000071379)	5730507C01Rik (ENSMUSG00000073197)	Gm21863 (ENSMUSG00000095470)	Asap2 (ENSMUSG00000052632) #16	Itgb1bp1 (ENSMUSG00000062352) #17	Cpsf3 (ENSMUSG00000054309) #18	Iah1 (ENSMUSG00000062054)	Adam17 (ENSMUSG00000052593) #19	Ywhaq (ENSMUSG00000076432) ##20	9030624G23Rik (ENSMUSG00000073158)	Taf1b (ENSMUSG00000059669) #21	Grhl1 (ENSMUSG00000020656) #22	Klf11 (ENSMUSG00000020653) #23	Cys1 (ENSMUSG00000062563)	Rrm2 (ENSMUSG00000020649)	Mboat2 (ENSMUSG00000020646)	Kidins220 (ENSMUSG00000036333)	Id2 (ENSMUSG00000020644)	Rnf144a (ENSMUSG00000020642)	Rsad2 (ENSMUSG00000020641)	Cmpk2 (ENSMUSG00000020638)	Sox11 (ENSMUSG00000063632)	Dcdc2c (ENSMUSG00000020633)	Allc (ENSMUSG00000020636)	Colec11 (ENSMUSG00000036655)	Rps7 (ENSMUSG00000061477)	Rnaseh1 (ENSMUSG00000020630)
Mus_C	ANCESTRAL SPECIES	11	ENSGT00940000153916.B.c	ENSGT00940000154459.B	ENSGT00940000160213	ENSGT00940000155646	ENSGT00390000004263.b	ENSGT00390000007900	ENSGT00950000182995.e.a.a.a.e	ENSGT00940000154645.A	ENSGT00940000155623 #16	ENSGT00390000003990 #17	ENSGT00940000155699 #18	ENSGT00390000008069	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845	ENSGT00390000013305.a.a.v	ENSGT01030000234564.a.a.a.a.b	ENSGT00940000156714	ENSGT00940000156464	ENSGT00940000157701	ENSGT00390000013670	ENSGT00940000154030.a.b	ENSGT00940000161652	ENSGT00940000162396	ENSGT00390000001793	ENSGT00940000159468	ENSGT00390000014122.i.b.a.b	ENSGT00390000003466
spretus	MODERN SPECIES	3	Rock2 (MGP_SPRETEiJ_G0018472)	MGP_SPRETEiJ_G0018473	2410004P03Rik (MGP_SPRETEiJ_G0018474)	Kcnf1 (MGP_SPRETEiJ_G0018475)	Pdia6 (MGP_SPRETEiJ_G0018476)	Atp6v1c2 (MGP_SPRETEiJ_G0018477)	Nol10 (MGP_SPRETEiJ_G0018478)	Asap2 (MGP_SPRETEiJ_G0018479) #16	Itgb1bp1 (MGP_SPRETEiJ_G0018480) #17	Cpsf3 (MGP_SPRETEiJ_G0018481) #18	Iah1 (MGP_SPRETEiJ_G0018482)	Adam17 (MGP_SPRETEiJ_G0018483) #19	Ywhaq (MGP_SPRETEiJ_G0018484) ##20	Taf1b (MGP_SPRETEiJ_G0018485) #21	MGP_SPRETEiJ_G0018486	Grhl1 (MGP_SPRETEiJ_G0018487) #22	Klf11 (MGP_SPRETEiJ_G0018488) #23	Cys1 (MGP_SPRETEiJ_G0018489)	Rrm2 (MGP_SPRETEiJ_G0018490)	Mboat2 (MGP_SPRETEiJ_G0018491)	Kidins220 (MGP_SPRETEiJ_G0018492)	MGP_SPRETEiJ_G0018493	Rnf144a (MGP_SPRETEiJ_G0018494)	Rsad2 (MGP_SPRETEiJ_G0018495)	Cmpk2 (MGP_SPRETEiJ_G0018496)	Sox11 (MGP_SPRETEiJ_G0018497)	MGP_SPRETEiJ_G0018498	Allc (MGP_SPRETEiJ_G0018499)	Colec11 (MGP_SPRETEiJ_G0018500)	MGP_SPRETEiJ_G0018501	Rnaseh1 (MGP_SPRETEiJ_G0018502)
Steppe mouse	MODERN SPECIES	56															Taf1b (ENSMSIG00000026008) #21	Grhl1 (ENSMSIG00000025943) #22	Klf11 (ENSMSIG00000025936) #23	ENSMSIG00000025932	Rrm2 (ENSMSIG00000025915)	Mboat2 (ENSMSIG00000025871)	Kidins220 (ENSMSIG00000025770)	ENSMSIG00000025759	ENSMSIG00000025755	ENSMSIG00000025745	Rnf144a (ENSMSIG00000025691)	Rsad2 (ENSMSIG00000025674)	ENSMSIG00000025668	ENSMSIG00000025619
Ryukyu mouse	MODERN SPECIES	3	Rock2 (MGP_CAROLIEiJ_G0017630)	MGP_CAROLIEiJ_G0017631	MGP_CAROLIEiJ_G0017632	Kcnf1 (MGP_CAROLIEiJ_G0017633)	Pdia6 (MGP_CAROLIEiJ_G0017634)	Atp6v1c2 (MGP_CAROLIEiJ_G0017635)	Nol10 (MGP_CAROLIEiJ_G0017636)	Odc1 (MGP_CAROLIEiJ_G0017637)	Asap2 (MGP_CAROLIEiJ_G0017638) #16	Itgb1bp1 (MGP_CAROLIEiJ_G0017639) #17	Cpsf3 (MGP_CAROLIEiJ_G0017640) #18	Iah1 (MGP_CAROLIEiJ_G0017641)	Adam17 (MGP_CAROLIEiJ_G0017642) #19	Ywhaq (MGP_CAROLIEiJ_G0017643) ##20	Taf1b (MGP_CAROLIEiJ_G0017644) #21	Grhl1 (MGP_CAROLIEiJ_G0017645) #22	Klf11 (MGP_CAROLIEiJ_G0017646) #23	Cys1 (MGP_CAROLIEiJ_G0017647)	Rrm2 (MGP_CAROLIEiJ_G0017648)	Mboat2 (MGP_CAROLIEiJ_G0017649)	Kidins220 (MGP_CAROLIEiJ_G0017650)	MGP_CAROLIEiJ_G0017651	Rnf144a (MGP_CAROLIEiJ_G0017652)	Rsad2 (MGP_CAROLIEiJ_G0017653)	Cmpk2 (MGP_CAROLIEiJ_G0017654)	Sox11 (MGP_CAROLIEiJ_G0017655)	MGP_CAROLIEiJ_G0017656	Allc (MGP_CAROLIEiJ_G0017657)	Colec11 (MGP_CAROLIEiJ_G0017658)	Rps7 (MGP_CAROLIEiJ_G0017659)	Rnaseh1 (MGP_CAROLIEiJ_G0017660)
Shrew mouse	MODERN SPECIES	20	Rock2 (MGP_PahariEiJ_G0029387)	Pqlc3 (MGP_PahariEiJ_G0029388)	MGP_PahariEiJ_G0029389	Kcnf1 (MGP_PahariEiJ_G0029390)	Pdia6 (MGP_PahariEiJ_G0029391)	Atp6v1c2 (MGP_PahariEiJ_G0029392)	Nol10 (MGP_PahariEiJ_G0029393)	Odc1 (MGP_PahariEiJ_G0029394)	Asap2 (MGP_PahariEiJ_G0029395) #16	Itgb1bp1 (MGP_PahariEiJ_G0029396) #17	Cpsf3 (MGP_PahariEiJ_G0029397) #18	Iah1 (MGP_PahariEiJ_G0029398)	Adam17 (MGP_PahariEiJ_G0029399) #19	MGP_PahariEiJ_G0029400 ##20	MGP_PahariEiJ_G0029401 #21	MGP_PahariEiJ_G0029402 #22	Klf11 (MGP_PahariEiJ_G0029403) #23	Cys1 (MGP_PahariEiJ_G0029404)	MGP_PahariEiJ_G0029405	Mboat2 (MGP_PahariEiJ_G0029407)	Kidins220 (MGP_PahariEiJ_G0029408)	MGP_PahariEiJ_G0029409	Rnf144a (MGP_PahariEiJ_G0029410)	Rsad2 (MGP_PahariEiJ_G0029411)	Cmpk2 (MGP_PahariEiJ_G0029412)	Sox11 (MGP_PahariEiJ_G0029413)	MGP_PahariEiJ_G0029414	Allc (MGP_PahariEiJ_G0029415)	Colec11 (MGP_PahariEiJ_G0029416)	MGP_PahariEiJ_G0029417	Rnaseh1 (MGP_PahariEiJ_G0029418)
Rat	MODERN SPECIES	16	Pdia6 (ENSRNOG00000050197)	Atp6v1c2 (ENSRNOG00000050553)	Nol10 (ENSRNOG00000005344)	AABR07063703.1 (ENSRNOG00000046279)	Odc1 (ENSRNOG00000005424)	LOC120093238 (ENSRNOG00000032523)	Hpcal1 (ENSRNOG00000005492)	Asap2 (ENSRNOG00000061519) #16	Itgb1bp1 (ENSRNOG00000059402) #17	Cpsf3 (ENSRNOG00000052418) #18	Iah1 (ENSRNOG00000060853)	Adam17 (ENSRNOG00000060694) #19	Ywhaq (ENSRNOG00000051650) ##20	Taf1b (ENSRNOG00000061415) #21	Rbm34-ps1 (ENSRNOG00000065550)	Grhl1 (ENSRNOG00000054989) #22	Klf11 (ENSRNOG00000054259) #23	Cys1 (ENSRNOG00000058891)	Rrm2 (ENSRNOG00000054286)	Mboat2 (ENSRNOG00000061050)	Kidins220 (ENSRNOG00000023176)	LOC120093241 (ENSRNOG00000062523)	Id2 (ENSRNOG00000007237)	Rnf144a (ENSRNOG00000007370)	Rsad2 (ENSRNOG00000007539)	Cmpk2 (ENSRNOG00000007690)	Sox11 (ENSRNOG00000030034)	ENSRNOG00000068283	ENSRNOG00000069562	Dcdc2c (ENSRNOG00000067604)	ENSRNOG00000070424
Upper Galilee mountains blind mole rat	MODERN SPECIES	1517	Sox11 (ENSNGAG00000016772)	Cmpk2 (ENSNGAG00000020998)	Rsad2 (ENSNGAG00000020530)	Rnf144a (ENSNGAG00000018727)	Id2 (ENSNGAG00000018053)	Kidins220 (ENSNGAG00000012753)	Mboat2 (ENSNGAG00000004975)	Asap2 (ENSNGAG00000020450) #16	Itgb1bp1 (ENSNGAG00000015478) #17	Cpsf3 (ENSNGAG00000019836) #18	Iah1 (ENSNGAG00000017153)	Adam17 (ENSNGAG00000016571) #19	Ywhaq (ENSNGAG00000012388) ##20	ENSNGAG00000015636	Taf1b (ENSNGAG00000010048) #21	Grhl1 (ENSNGAG00000004562) #22	Klf11 (ENSNGAG00000018758) #23	Cys1 (ENSNGAG00000015080)	Rrm2 (ENSNGAG00000013008)	Hpcal1 (ENSNGAG00000012465)	ENSNGAG00000001599	ENSNGAG00000019061	Nol10 (ENSNGAG00000015506)	Atp6v1c2 (ENSNGAG00000000867)	Pdia6 (ENSNGAG00000014585)	Kcnf1 (ENSNGAG00000017575)	ENSNGAG00000011266	Pqlc3 (ENSNGAG00000009941)	Rock2 (ENSNGAG00000019681)	E2f6 (ENSNGAG00000012686)	Greb1 (ENSNGAG00000019611)
Lesser Egyptian jerboa	MODERN SPECIES	123	E2f6 (ENSJJAG00000023699)	Rock2 (ENSJJAG00000000496)	ENSJJAG00000000353	Pqlc3 (ENSJJAG00000001428)	ENSJJAG00000003503	Kcnf1 (ENSJJAG00000012515)	Pdia6 (ENSJJAG00000011060)	Atp6v1c2 (ENSJJAG00000011787)	Nol10 (ENSJJAG00000013166)	ENSJJAG00000013286	Hpcal1 (ENSJJAG00000013350)	ENSJJAG00000013475	ENSJJAG00000012792	B3gnt5 (ENSJJAG00000012804)	Taf1b (ENSJJAG00000015578) #21	Grhl1 (ENSJJAG00000018256) #22	ENSJJAG00000012892	Klf11 (ENSJJAG00000012906) #23	Atp13a3 (ENSJJAG00000014687)	Gp5 (ENSJJAG00000017681)	Lrrc15 (ENSJJAG00000017868)	Hes1 (ENSJJAG00000018186)	Slc13a5 (ENSJJAG00000018624)	Med31 (ENSJJAG00000019488)	Txndc17 (ENSJJAG00000019649)	ENSJJAG00000020287	Pitpnm3 (ENSJJAG00000020872)	Pimreg (ENSJJAG00000021925)	Aipl1 (ENSJJAG00000022099)	Wscd1 (ENSJJAG00000022353)
Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00940000162396	ENSGT00940000161652	ENSGT00940000154030.a.b	ENSGT00390000013670	ENSGT00940000157701	ENSGT00940000156464	ENSGT00940000156714	ENSGT01030000234564.a.a.a.a.b	ENSGT00940000155623 #16	ENSGT00390000003990 #17	ENSGT00940000155699 #18	ENSGT00390000008069	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845	ENSGT00390000013305.a.a.v	ENSGT00940000154645.A	ENSGT00950000182995.e.a.a.a	ENSGT00390000007900	ENSGT00390000004263.b	ENSGT00940000155646	ENSGT00940000160213	ENSGT00940000154459.B	ENSGT00940000153916.B	ENSGT01030000234517.D	ENSGT00940000155734.q	ENSGT00390000008041.C	ENSGT01100000263518.A.a.a.b
Hystricomorpha	ANCESTRAL SPECIES	64								ENSGT00940000155623 #16	ENSGT00390000003990 #17	ENSGT00940000155699 #18	ENSGT00390000008069	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a ##20	ENSGT01090000260040.b.b.b.b.b ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a.u.a	ENSGT00390000016845	ENSGT00390000013305.a.a.v	ENSGT00940000154645.A	ENSGT00950000182995.e.a.a.a	ENSGT00390000007900	ENSGT00390000004263.b	ENSGT00940000155646	ENSGT00940000160213	ENSGT00940000154459.B	ENSGT00940000153916.B	ENSGT01030000234517.D	ENSGT00940000155734.q	ENSGT00390000008041.C
Naked mole-rat female	MODERN SPECIES	19															ENSHGLG00000001858 #21	GRHL1 (ENSHGLG00000004863) #22	KLF11 (ENSHGLG00000033218) #23	ENSHGLG00000002385	RRM2 (ENSHGLG00000000884)	HPCAL1 (ENSHGLG00000000540)	ENSHGLG00000000300	NOL10 (ENSHGLG00000001564)	ATP6V1C2 (ENSHGLG00000001064)	PDIA6 (ENSHGLG00000000403)	ENSHGLG00000047929	ENSHGLG00000050301	KCNF1 (ENSHGLG00000003808)	ENSHGLG00000000514	ENSHGLG00000001946	SLC66A3 (ENSHGLG00000001582)	ENSHGLG00000046079
Hystricomorpha_a	ANCESTRAL SPECIES	70	ENSGT00390000014122.i.b.a.b	ENSGT00390000003466	ENSGT00390000008195	ENSGT00390000002448	ENSGT00730000111137	ENSGT00940000155671	ENSGT00940000157666	ENSGT00940000155623 #16	ENSGT00390000003990 #17	ENSGT00940000155699 #18	ENSGT00390000008069	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a ##20	ENSGT01090000260040.b.b.b.b.b ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a.v	ENSGT00940000154645.A	ENSGT00950000182995.e.a.a.a	ENSGT00390000007900	ENSGT00390000004263.b	ENSGT00940000155646	ENSGT00940000160213	ENSGT00940000154459.B	ENSGT00940000153916.B	ENSGT01030000234517.D	ENSGT00940000155734.q	ENSGT00390000008041.C	ENSGT00940000157219	ENSGT00950000182986.a.b.a
Guinea pig	MODERN SPECIES	125																GRHL1 (ENSCPOG00000010783) #22	KLF11 (ENSCPOG00000025767) #23	RRM2 (ENSCPOG00000008652)	HPCAL1 (ENSCPOG00000034185)	ODC1 (ENSCPOG00000008476)	NOL10 (ENSCPOG00000007706)	ATP6V1C2 (ENSCPOG00000008738)	PDIA6 (ENSCPOG00000010804)	KCNF1 (ENSCPOG00000015432)	C2orf50 (ENSCPOG00000034329)	SLC66A3 (ENSCPOG00000031555)	ROCK2 (ENSCPOG00000012664)	E2F6 (ENSCPOG00000019385)	GREB1 (ENSCPOG00000006588)	LPIN1 (ENSCPOG00000013546)	TRIB2 (ENSCPOG00000040411)
Hystricomorpha_b	ANCESTRAL SPECIES	91	ENSGT00390000014122.i.b.a.b	ENSGT00390000003466	ENSGT00390000008195	ENSGT00390000002448	ENSGT00730000111137	ENSGT00940000155671	ENSGT00940000157666	ENSGT00940000155623 #16	ENSGT00390000003990 #17	ENSGT00940000155699 #18	ENSGT00390000008069	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a ##20	ENSGT01090000260040.b.b.b.b.b ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000013305.a.a.v	ENSGT00390000013305.a.a.u.a	ENSGT00940000154645.A	ENSGT00950000182995.e.a.a.a	ENSGT00390000007900	ENSGT00390000004263.b	ENSGT00940000155646	ENSGT00940000160213	ENSGT00940000170593	ENSGT00940000153916.B	ENSGT01030000234517.D	ENSGT00940000155734.q	ENSGT00390000008041.C	ENSGT00940000157219
Long-tailed chinchilla	MODERN SPECIES	194	RPS7 (ENSCLAG00000002424)	RNASEH1 (ENSCLAG00000002440)	ADI1 (ENSCLAG00000002464)	TRAPPC12 (ENSCLAG00000002486)	EIPR1 (ENSCLAG00000002535)	ENSCLAG00000001592	MYT1L (ENSCLAG00000001644)	PXDN (ENSCLAG00000001727)	ASAP2 (ENSCLAG00000001989) #16	ITGB1BP1 (ENSCLAG00000002388) #17	CPSF3 (ENSCLAG00000002727) #18	IAH1 (ENSCLAG00000002879)	ADAM17 (ENSCLAG00000003055) #19	YWHAQ (ENSCLAG00000003576) ##20	TAF1B (ENSCLAG00000003776) #21	GRHL1 (ENSCLAG00000004000) #22	ENSCLAG00000004146 #23	RRM2 (ENSCLAG00000001926)	ENSCLAG00000002025	HPCAL1 (ENSCLAG00000002037)	ODC1 (ENSCLAG00000002140)	NOL10 (ENSCLAG00000002234)	ATP6V1C2 (ENSCLAG00000006612)	PDIA6 (ENSCLAG00000006956)	KCNF1 (ENSCLAG00000017968)	ENSCLAG00000007661	SLC66A3 (ENSCLAG00000008584)	ROCK2 (ENSCLAG00000009471)	E2F6 (ENSCLAG00000004863)	GREB1 (ENSCLAG00000005662)	LPIN1 (ENSCLAG00000001810)
Degu	MODERN SPECIES	192				MYT1L (ENSODEG00000001544)	ENSODEG00000018668	PXDN (ENSODEG00000001228)	ASAP2 (ENSODEG00000001497) #16	ENSODEG00000018909	ENSODEG00000003101 #17	CPSF3 (ENSODEG00000003129) #18	IAH1 (ENSODEG00000003362)	ADAM17 (ENSODEG00000003472) #19	YWHAQ (ENSODEG00000001504) ##20	ENSODEG00000001535	TAF1B (ENSODEG00000002052) #21	GRHL1 (ENSODEG00000002151) #22	ENSODEG00000002288 #23	RRM2 (ENSODEG00000002317)	ENSODEG00000002415	ODC1 (ENSODEG00000000437)	NOL10 (ENSODEG00000000508)	ATP6V1C2 (ENSODEG00000000754)	ENSODEG00000000842	ENSODEG00000000975	ENSODEG00000000987	ENSODEG00000001162	ENSODEG00000001198	ENSODEG00000001238	GREB1 (ENSODEG00000002144)	LPIN1 (ENSODEG00000003117)	TRIB2 (ENSODEG00000003153)
Sciuridae	ANCESTRAL SPECIES	16	ENSGT00940000162396	ENSGT00940000161652	ENSGT00940000154030.a.b	ENSGT00390000013670	ENSGT00940000157701	ENSGT00940000156464	ENSGT00940000156714	ENSGT01030000234564.a.a.a.a.b	ENSGT00940000155623 #16	ENSGT00390000003990 #17	ENSGT00940000155699 #18	ENSGT00390000008069	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982.b #23	ENSGT00390000016845	ENSGT00390000013305.a.a.v.b	ENSGT00940000154645.A	ENSGT00950000182995.e.a.a.a	ENSGT00390000007900	ENSGT00390000004263.b	ENSGT00940000155646	ENSGT00940000160213	ENSGT00940000154459.B	ENSGT00940000153916.B	ENSGT01030000234517.D	ENSGT00940000155734.q	ENSGT00390000008041.C	ENSGT01100000263518.A.a.a.b
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	5	SOX11 (ENSSVLG00005021089)	CMPK2 (ENSSVLG00005020981)	RSAD2 (ENSSVLG00005020911)	RNF144A (ENSSVLG00005020868)	ID2 (ENSSVLG00005020830)	KIDINS220 (ENSSVLG00005020790)	MBOAT2 (ENSSVLG00005020748)	ASAP2 (ENSSVLG00005020310) #16	ITGB1BP1 (ENSSVLG00005020179) #17	CPSF3 (ENSSVLG00005020098) #18	IAH1 (ENSSVLG00005019997)	ADAM17 (ENSSVLG00005019936) #19	YWHAQ (ENSSVLG00005019899) ##20	ENSSVLG00005019881	ENSSVLG00005019695 #21	ENSSVLG00005019438 #22	KLF11 (ENSSVLG00005019337) #23	CYS1 (ENSSVLG00005019295)	ENSSVLG00005019233	HPCAL1 (ENSSVLG00005019176)	ENSSVLG00005019056	NOL10 (ENSSVLG00005018977)	ENSSVLG00005018931	ATP6V1C2 (ENSSVLG00005018543)	PDIA6 (ENSSVLG00005018305)	KCNF1 (ENSSVLG00005018274)	C2orf50 (ENSSVLG00005018240)	SLC66A3 (ENSSVLG00005018165)	ROCK2 (ENSSVLG00005018051)	ENSSVLG00005017989	ENSSVLG00005017788
Eurasian red squirrel	MODERN SPECIES	42					ENSSVLG00005018207	ENSSVLG00005018167	ENSSVLG00005018123	ENSSVLG00005018056	ENSSVLG00005018030	ENSSVLG00005017990	ENSSVLG00005017973	ENSSVLG00005017934	ENSSVLG00005017901	ENSSVLG00005017853	ENSSVLG00005017798	ENSSVLG00005017762 #22
Marmotini	ANCESTRAL SPECIES	14	ENSGT00940000162396	ENSGT00940000161652	ENSGT00940000154030.a.b	ENSGT00390000013670	ENSGT00940000157701	ENSGT00940000156464	ENSGT00940000156714	ENSGT01030000234564.a.a.a.a.b	ENSGT00940000155623 #16	ENSGT00390000003990 #17	ENSGT00940000155699 #18	ENSGT00390000008069.k.a	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a ##20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982.b #23	ENSGT00390000016845	ENSGT00390000013305.a.a.v.b	ENSGT00940000154645.A	ENSGT00950000182995.e.a.a.a	ENSGT00390000007900	ENSGT00390000004263.b	ENSGT00940000155646	ENSGT00940000160213	ENSGT00940000154459.B	ENSGT00940000153916.B	ENSGT01030000234517.D	ENSGT00940000155734.q	ENSGT00390000008041.C	ENSGT01100000263518.A.a.a.b
Marmotini_b	ANCESTRAL SPECIES	17	ENSGT00940000162396	ENSGT00940000161652	ENSGT00940000154030.a.b	ENSGT00390000013670	ENSGT00940000157701	ENSGT00940000156464	ENSGT00940000156714	ENSGT01030000234564.a.a.a.a.b	ENSGT00940000155623 #16	ENSGT00390000003990 #17	ENSGT00940000155699 #18	ENSGT00390000008069.k.a	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982.b #23	ENSGT00390000013305.a.a.v.b	ENSGT00940000154645.A	ENSGT00950000182995.e.a.a.a	ENSGT00390000007900	ENSGT00390000004263.b	ENSGT00940000155646	ENSGT00940000160213	ENSGT00940000154459.B	ENSGT00940000153916.B	ENSGT01030000234517.D	ENSGT00940000155734.q	ENSGT00390000008041.C	ENSGT01100000263518.A.a.a.b	ENSGT00940000157219
Squirrel	MODERN SPECIES	132	ALLC (ENSSTOG00000002136)	DCDC2C (ENSSTOG00000020234)	CMPK2 (ENSSTOG00000019402)	RSAD2 (ENSSTOG00000006147)	RNF144A (ENSSTOG00000027570)	ID2 (ENSSTOG00000019401)	KIDINS220 (ENSSTOG00000013232)	MBOAT2 (ENSSTOG00000020147)	ASAP2 (ENSSTOG00000004398) #16	ITGB1BP1 (ENSSTOG00000004464) #17	CPSF3 (ENSSTOG00000004476) #18	ENSSTOG00000004500	ADAM17 (ENSSTOG00000004510) #19	ENSSTOG00000024378 #20	TAF1B (ENSSTOG00000002419) #21	GRHL1 (ENSSTOG00000019842) #22	ENSSTOG00000030936 #23	ENSSTOG00000033669	HPCAL1 (ENSSTOG00000001514)	ENSSTOG00000000386	NOL10 (ENSSTOG00000005485)	ATP6V1C2 (ENSSTOG00000005527)	PDIA6 (ENSSTOG00000005550)	C2orf50 (ENSSTOG00000002600)	SLC66A3 (ENSSTOG00000027023)	ROCK2 (ENSSTOG00000002624)	E2F6 (ENSSTOG00000003316)	GREB1 (ENSSTOG00000026032)	NTSR2 (ENSSTOG00000010000)	LPIN1 (ENSSTOG00000010854)	ENSSTOG00000002702
Arctic ground squirrel	MODERN SPECIES			SOX11 (ENSUPAG00010012315)	CMPK2 (ENSUPAG00010012310)	RSAD2 (ENSUPAG00010012305)	RNF144A (ENSUPAG00010012263)	ID2 (ENSUPAG00010012253)	KIDINS220 (ENSUPAG00010012028)	MBOAT2 (ENSUPAG00010011957)	ASAP2 (ENSUPAG00010011650) #16	ITGB1BP1 (ENSUPAG00010011629) #17	CPSF3 (ENSUPAG00010011610) #18	ENSUPAG00010011577	ADAM17 (ENSUPAG00010011539) #19	YWHAQ (ENSUPAG00010011534) ##20	TAF1B (ENSUPAG00010011508) #21	GRHL1 (ENSUPAG00010011483) #22	KLF11 (ENSUPAG00010011457) #23	CYS1 (ENSUPAG00010011444)	HPCAL1 (ENSUPAG00010011428)	ODC1 (ENSUPAG00010011416)	NOL10 (ENSUPAG00010011386)	ATP6V1C2 (ENSUPAG00010011265)	PDIA6 (ENSUPAG00010011237)	KCNF1 (ENSUPAG00010011227)	C2orf50 (ENSUPAG00010011218)	SLC66A3 (ENSUPAG00010011204)	ROCK2 (ENSUPAG00010011170)	ENSUPAG00010011160	E2F6 (ENSUPAG00010011151)	GREB1 (ENSUPAG00010011107)	NTSR2 (ENSUPAG00010011106)
Alpin marmot	MODERN SPECIES	6	ENSMMMG00000022822	SOX11 (ENSMMMG00000022819)	CMPK2 (ENSMMMG00000022812)	RSAD2 (ENSMMMG00000022810)	RNF144A (ENSMMMG00000022809)	ID2 (ENSMMMG00000022803)	KIDINS220 (ENSMMMG00000022748)	MBOAT2 (ENSMMMG00000022735)	ASAP2 (ENSMMMG00000022671) #16	ITGB1BP1 (ENSMMMG00000022669) #17	CPSF3 (ENSMMMG00000022663) #18	IAH1 (ENSMMMG00000022658)	ADAM17 (ENSMMMG00000022654) #19	YWHAQ (ENSMMMG00000022652) ##20	TAF1B (ENSMMMG00000022638) #21	GRHL1 (ENSMMMG00000022631) #22	KLF11 (ENSMMMG00000022629) #23	ENSMMMG00000022625	ENSMMMG00000022624	HPCAL1 (ENSMMMG00000022618)	ODC1 (ENSMMMG00000022615)	NOL10 (ENSMMMG00000022607)	ATP6V1C2 (ENSMMMG00000022583)	PDIA6 (ENSMMMG00000022575)	KCNF1 (ENSMMMG00000022573)	C2orf50 (ENSMMMG00000022565)	SLC66A3 (ENSMMMG00000022562)	ROCK2 (ENSMMMG00000022550)	E2F6 (ENSMMMG00000022544)	GREB1 (ENSMMMG00000022514)	LPIN1 (ENSMMMG00000022468)
Lagomorpha	ANCESTRAL SPECIES	233						ENSGT00940000156714	ENSGT01030000234564.a.a.a.a.b	ENSGT00940000155623 #16	ENSGT00390000003990 #17	ENSGT00940000155699 #18	ENSGT00390000008069	ENSGT00940000155443 #19	ENSGT01090000260040.b.b.b.b.a.a ##20	ENSGT01090000260040.b.b.b.b.a.b #20	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23
Rabbit	MODERN SPECIES	536						KIDINS220 (ENSOCUG00000003996)	MBOAT2 (ENSOCUG00000016985)	ASAP2 (ENSOCUG00000003719) #16	ENSOCUG00000003726 #17	IAH1 (ENSOCUG00000026669)	ADAM17 (ENSOCUG00000010474) #19	YWHAQ (ENSOCUG00000010482) ##20	CPSF3 (ENSOCUG00000003728) #18	ENSOCUG00000028159	TAF1B (ENSOCUG00000005643) #21	GRHL1 (ENSOCUG00000017717) #22	KLF11 (ENSOCUG00000003809) #23
Pika	MODERN SPECIES	2207									ENSOPRG00000008852 #16	ITGB1BP1 (ENSOPRG00000008887) #17	CPSF3 (ENSOPRG00000008902) #18	IAH1 (ENSOPRG00000008947)	ADAM17 (ENSOPRG00000008960) #19	ENSOPRG00000008991 #20	TAF1B (ENSOPRG00000008998) #21	ENSOPRG00000009027 #22