Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000153916.B.c	ENSGT00940000154459.B	ENSGT00940000160213	ENSGT00940000155646	ENSGT00390000004263.b	ENSGT00390000007900	ENSGT00950000182995.e.a.a.a.e	ENSGT01060000248676	ENSGT00940000155623	ENSGT00390000003990	ENSGT00940000155699	ENSGT00390000008069	ENSGT00940000155443	ENSGT01090000260040.b.b.b.b.a.a	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845	ENSGT00390000013305.a.a.v #25	ENSGT01030000234564.a.a.a.a.b #26	ENSGT00940000156714 #27	ENSGT00940000156464 #28	ENSGT00940000157701 #31	ENSGT00390000013670 #32	ENSGT00940000154030.a.b	ENSGT00940000161652	ENSGT00940000162396	ENSGT00390000001793	ENSGT00940000159468	ENSGT00390000014122.i.b.a.b	ENSGT00390000003466
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000154459.B	ENSGT00940000160213	ENSGT00940000155646	ENSGT00390000004263.b	ENSGT00390000007900	ENSGT00950000182995.e.a.a.a.e	ENSGT00940000154645.A	ENSGT01060000248676	ENSGT00940000155623	ENSGT00390000003990	ENSGT00940000155699	ENSGT00390000008069	ENSGT00940000155443	ENSGT01090000260040.b.b.b.b.a.a	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845	ENSGT00390000013305.a.a.v #25	ENSGT01030000234564.a.a.a.a.b #26	ENSGT00940000156714 #27	ENSGT00940000156464 #28	ENSGT00940000157701 #31	ENSGT00390000013670 #32	ENSGT00940000154030.a.b	ENSGT00940000161652	ENSGT00940000162396	ENSGT00390000001793	ENSGT00940000159468	ENSGT00390000014122.i.b.a.b	ENSGT00390000003466
Mus_C	ANCESTRAL SPECIES	11	ENSGT00940000153916.B.c	ENSGT00940000154459.B	ENSGT00940000160213	ENSGT00940000155646	ENSGT00390000004263.b	ENSGT00390000007900	ENSGT00950000182995.e.a.a.a.e	ENSGT00940000154645.A	ENSGT00940000155623	ENSGT00390000003990	ENSGT00940000155699	ENSGT00390000008069	ENSGT00940000155443	ENSGT01090000260040.b.b.b.b.a.a	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845	ENSGT00390000013305.a.a.v #25	ENSGT01030000234564.a.a.a.a.b #26	ENSGT00940000156714 #27	ENSGT00940000156464 #28	ENSGT00940000157701 #31	ENSGT00390000013670 #32	ENSGT00940000154030.a.b	ENSGT00940000161652	ENSGT00940000162396	ENSGT00390000001793	ENSGT00940000159468	ENSGT00390000014122.i.b.a.b	ENSGT00390000003466
Steppe mouse	MODERN SPECIES	56															Taf1b (ENSMSIG00000026008) #21	Grhl1 (ENSMSIG00000025943) #22	Klf11 (ENSMSIG00000025936) #23	ENSMSIG00000025932 #24	Rrm2 (ENSMSIG00000025915) #25	Mboat2 (ENSMSIG00000025871) #26	Kidins220 (ENSMSIG00000025770) #27	ENSMSIG00000025759 #28	ENSMSIG00000025755 #29	ENSMSIG00000025745 #30	Rnf144a (ENSMSIG00000025691) #31	Rsad2 (ENSMSIG00000025674) #32	ENSMSIG00000025668 #33	ENSMSIG00000025619 #34
spretus	MODERN SPECIES	3	Rock2 (MGP_SPRETEiJ_G0018472)	MGP_SPRETEiJ_G0018473	2410004P03Rik (MGP_SPRETEiJ_G0018474)	Kcnf1 (MGP_SPRETEiJ_G0018475)	Pdia6 (MGP_SPRETEiJ_G0018476)	Atp6v1c2 (MGP_SPRETEiJ_G0018477)	Nol10 (MGP_SPRETEiJ_G0018478)	Asap2 (MGP_SPRETEiJ_G0018479)	Itgb1bp1 (MGP_SPRETEiJ_G0018480)	Cpsf3 (MGP_SPRETEiJ_G0018481)	Iah1 (MGP_SPRETEiJ_G0018482)	Adam17 (MGP_SPRETEiJ_G0018483)	Ywhaq (MGP_SPRETEiJ_G0018484)	Taf1b (MGP_SPRETEiJ_G0018485) #21	MGP_SPRETEiJ_G0018486	Grhl1 (MGP_SPRETEiJ_G0018487) #22	Klf11 (MGP_SPRETEiJ_G0018488) #23	Cys1 (MGP_SPRETEiJ_G0018489)	Rrm2 (MGP_SPRETEiJ_G0018490) #25	Mboat2 (MGP_SPRETEiJ_G0018491) #26	Kidins220 (MGP_SPRETEiJ_G0018492) #27	MGP_SPRETEiJ_G0018493 #28	Rnf144a (MGP_SPRETEiJ_G0018494) #31	Rsad2 (MGP_SPRETEiJ_G0018495) #32	Cmpk2 (MGP_SPRETEiJ_G0018496)	Sox11 (MGP_SPRETEiJ_G0018497)	MGP_SPRETEiJ_G0018498	Allc (MGP_SPRETEiJ_G0018499)	Colec11 (MGP_SPRETEiJ_G0018500)	MGP_SPRETEiJ_G0018501	Rnaseh1 (MGP_SPRETEiJ_G0018502)
Mouse	MODERN SPECIES	3	Pdia6 (ENSMUSG00000020571)	Atp6v1c2 (ENSMUSG00000020566)	Nol10 (ENSMUSG00000061458)	Odc1 (ENSMUSG00000011179)	Hpcal1 (ENSMUSG00000071379)	5730507C01Rik (ENSMUSG00000073197)	Gm21863 (ENSMUSG00000095470)	Asap2 (ENSMUSG00000052632)	Itgb1bp1 (ENSMUSG00000062352)	Cpsf3 (ENSMUSG00000054309)	Iah1 (ENSMUSG00000062054)	Adam17 (ENSMUSG00000052593)	Ywhaq (ENSMUSG00000076432)	9030624G23Rik (ENSMUSG00000073158)	Taf1b (ENSMUSG00000059669) #21	Grhl1 (ENSMUSG00000020656) #22	Klf11 (ENSMUSG00000020653) #23	Cys1 (ENSMUSG00000062563)	Rrm2 (ENSMUSG00000020649) #25	Mboat2 (ENSMUSG00000020646) #26	Kidins220 (ENSMUSG00000036333) #27	Id2 (ENSMUSG00000020644) #28	Rnf144a (ENSMUSG00000020642) #31	Rsad2 (ENSMUSG00000020641) #32	Cmpk2 (ENSMUSG00000020638)	Sox11 (ENSMUSG00000063632)	Dcdc2c (ENSMUSG00000020633)	Allc (ENSMUSG00000020636)	Colec11 (ENSMUSG00000036655)	Rps7 (ENSMUSG00000061477)	Rnaseh1 (ENSMUSG00000020630)
Ryukyu mouse	MODERN SPECIES	3	Rock2 (MGP_CAROLIEiJ_G0017630)	MGP_CAROLIEiJ_G0017631	MGP_CAROLIEiJ_G0017632	Kcnf1 (MGP_CAROLIEiJ_G0017633)	Pdia6 (MGP_CAROLIEiJ_G0017634)	Atp6v1c2 (MGP_CAROLIEiJ_G0017635)	Nol10 (MGP_CAROLIEiJ_G0017636)	Odc1 (MGP_CAROLIEiJ_G0017637)	Asap2 (MGP_CAROLIEiJ_G0017638)	Itgb1bp1 (MGP_CAROLIEiJ_G0017639)	Cpsf3 (MGP_CAROLIEiJ_G0017640)	Iah1 (MGP_CAROLIEiJ_G0017641)	Adam17 (MGP_CAROLIEiJ_G0017642)	Ywhaq (MGP_CAROLIEiJ_G0017643)	Taf1b (MGP_CAROLIEiJ_G0017644) #21	Grhl1 (MGP_CAROLIEiJ_G0017645) #22	Klf11 (MGP_CAROLIEiJ_G0017646) #23	Cys1 (MGP_CAROLIEiJ_G0017647)	Rrm2 (MGP_CAROLIEiJ_G0017648) #25	Mboat2 (MGP_CAROLIEiJ_G0017649) #26	Kidins220 (MGP_CAROLIEiJ_G0017650) #27	MGP_CAROLIEiJ_G0017651 #28	Rnf144a (MGP_CAROLIEiJ_G0017652) #31	Rsad2 (MGP_CAROLIEiJ_G0017653) #32	Cmpk2 (MGP_CAROLIEiJ_G0017654)	Sox11 (MGP_CAROLIEiJ_G0017655)	MGP_CAROLIEiJ_G0017656	Allc (MGP_CAROLIEiJ_G0017657)	Colec11 (MGP_CAROLIEiJ_G0017658)	Rps7 (MGP_CAROLIEiJ_G0017659)	Rnaseh1 (MGP_CAROLIEiJ_G0017660)