Murinae	ANCESTRAL SPECIES	8	ENSGT00940000154459.B	ENSGT00940000160213	ENSGT00940000155646	ENSGT00390000004263.b	ENSGT00390000007900	ENSGT00950000182995.e.a.a.a	ENSGT00940000154645.A	ENSGT01060000248676	ENSGT00940000155623	ENSGT00390000003990	ENSGT00940000155699	ENSGT00390000008069	ENSGT00940000155443	ENSGT01090000260040.b.b.b.b.a.a	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845	ENSGT00390000013305.a.a.v #25	ENSGT01030000234564.a.a.a.a.b #26	ENSGT00940000156714 #27	ENSGT00940000156464 #28	ENSGT00940000157701 #31	ENSGT00390000013670 #32	ENSGT00940000154030.a.b	ENSGT00940000161652	ENSGT00940000162396	ENSGT00390000001793	ENSGT00940000159468	ENSGT00390000014122.i.b.a.b	ENSGT00390000003466
Mus	ANCESTRAL SPECIES	10	ENSGT00940000153916.B	ENSGT00940000154459.B	ENSGT00940000160213	ENSGT00940000155646	ENSGT00390000004263.b	ENSGT00390000007900	ENSGT00950000182995.e.a.a.a	ENSGT01060000248676	ENSGT00940000155623	ENSGT00390000003990	ENSGT00940000155699	ENSGT00390000008069	ENSGT00940000155443	ENSGT01090000260040.b.b.b.b.a.a	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845	ENSGT00390000013305.a.a.v #25	ENSGT01030000234564.a.a.a.a.b #26	ENSGT00940000156714 #27	ENSGT00940000156464 #28	ENSGT00940000157701 #31	ENSGT00390000013670 #32	ENSGT00940000154030.a.b	ENSGT00940000161652	ENSGT00940000162396	ENSGT00390000001793	ENSGT00940000159468	ENSGT00390000014122.i.b.a.b	ENSGT00390000003466
Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000153916.B.c	ENSGT00940000154459.B	ENSGT00940000160213	ENSGT00940000155646	ENSGT00390000004263.b	ENSGT00390000007900	ENSGT00950000182995.e.a.a.a.e	ENSGT01060000248676	ENSGT00940000155623	ENSGT00390000003990	ENSGT00940000155699	ENSGT00390000008069	ENSGT00940000155443	ENSGT01090000260040.b.b.b.b.a.a	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845	ENSGT00390000013305.a.a.v #25	ENSGT01030000234564.a.a.a.a.b #26	ENSGT00940000156714 #27	ENSGT00940000156464 #28	ENSGT00940000157701 #31	ENSGT00390000013670 #32	ENSGT00940000154030.a.b	ENSGT00940000161652	ENSGT00940000162396	ENSGT00390000001793	ENSGT00940000159468	ENSGT00390000014122.i.b.a.b	ENSGT00390000003466
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000154459.B	ENSGT00940000160213	ENSGT00940000155646	ENSGT00390000004263.b	ENSGT00390000007900	ENSGT00950000182995.e.a.a.a.e	ENSGT00940000154645.A	ENSGT01060000248676	ENSGT00940000155623	ENSGT00390000003990	ENSGT00940000155699	ENSGT00390000008069	ENSGT00940000155443	ENSGT01090000260040.b.b.b.b.a.a	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845	ENSGT00390000013305.a.a.v #25	ENSGT01030000234564.a.a.a.a.b #26	ENSGT00940000156714 #27	ENSGT00940000156464 #28	ENSGT00940000157701 #31	ENSGT00390000013670 #32	ENSGT00940000154030.a.b	ENSGT00940000161652	ENSGT00940000162396	ENSGT00390000001793	ENSGT00940000159468	ENSGT00390000014122.i.b.a.b	ENSGT00390000003466
Mus_C	ANCESTRAL SPECIES	11	ENSGT00940000153916.B.c	ENSGT00940000154459.B	ENSGT00940000160213	ENSGT00940000155646	ENSGT00390000004263.b	ENSGT00390000007900	ENSGT00950000182995.e.a.a.a.e	ENSGT00940000154645.A	ENSGT00940000155623	ENSGT00390000003990	ENSGT00940000155699	ENSGT00390000008069	ENSGT00940000155443	ENSGT01090000260040.b.b.b.b.a.a	ENSGT00440000033827 #21	ENSGT00940000157612 #22	ENSGT00940000155982 #23	ENSGT00390000016845	ENSGT00390000013305.a.a.v #25	ENSGT01030000234564.a.a.a.a.b #26	ENSGT00940000156714 #27	ENSGT00940000156464 #28	ENSGT00940000157701 #31	ENSGT00390000013670 #32	ENSGT00940000154030.a.b	ENSGT00940000161652	ENSGT00940000162396	ENSGT00390000001793	ENSGT00940000159468	ENSGT00390000014122.i.b.a.b	ENSGT00390000003466
Steppe mouse	MODERN SPECIES	56															Taf1b (ENSMSIG00000026008) #21	Grhl1 (ENSMSIG00000025943) #22	Klf11 (ENSMSIG00000025936) #23	ENSMSIG00000025932 #24	Rrm2 (ENSMSIG00000025915) #25	Mboat2 (ENSMSIG00000025871) #26	Kidins220 (ENSMSIG00000025770) #27	ENSMSIG00000025759 #28	ENSMSIG00000025755 #29	ENSMSIG00000025745 #30	Rnf144a (ENSMSIG00000025691) #31	Rsad2 (ENSMSIG00000025674) #32	ENSMSIG00000025668 #33	ENSMSIG00000025619 #34
spretus	MODERN SPECIES	3	Rock2 (MGP_SPRETEiJ_G0018472)	MGP_SPRETEiJ_G0018473	2410004P03Rik (MGP_SPRETEiJ_G0018474)	Kcnf1 (MGP_SPRETEiJ_G0018475)	Pdia6 (MGP_SPRETEiJ_G0018476)	Atp6v1c2 (MGP_SPRETEiJ_G0018477)	Nol10 (MGP_SPRETEiJ_G0018478)	Asap2 (MGP_SPRETEiJ_G0018479)	Itgb1bp1 (MGP_SPRETEiJ_G0018480)	Cpsf3 (MGP_SPRETEiJ_G0018481)	Iah1 (MGP_SPRETEiJ_G0018482)	Adam17 (MGP_SPRETEiJ_G0018483)	Ywhaq (MGP_SPRETEiJ_G0018484)	Taf1b (MGP_SPRETEiJ_G0018485) #21	MGP_SPRETEiJ_G0018486	Grhl1 (MGP_SPRETEiJ_G0018487) #22	Klf11 (MGP_SPRETEiJ_G0018488) #23	Cys1 (MGP_SPRETEiJ_G0018489)	Rrm2 (MGP_SPRETEiJ_G0018490) #25	Mboat2 (MGP_SPRETEiJ_G0018491) #26	Kidins220 (MGP_SPRETEiJ_G0018492) #27	MGP_SPRETEiJ_G0018493 #28	Rnf144a (MGP_SPRETEiJ_G0018494) #31	Rsad2 (MGP_SPRETEiJ_G0018495) #32	Cmpk2 (MGP_SPRETEiJ_G0018496)	Sox11 (MGP_SPRETEiJ_G0018497)	MGP_SPRETEiJ_G0018498	Allc (MGP_SPRETEiJ_G0018499)	Colec11 (MGP_SPRETEiJ_G0018500)	MGP_SPRETEiJ_G0018501	Rnaseh1 (MGP_SPRETEiJ_G0018502)
Mouse	MODERN SPECIES	3	Pdia6 (ENSMUSG00000020571)	Atp6v1c2 (ENSMUSG00000020566)	Nol10 (ENSMUSG00000061458)	Odc1 (ENSMUSG00000011179)	Hpcal1 (ENSMUSG00000071379)	5730507C01Rik (ENSMUSG00000073197)	Gm21863 (ENSMUSG00000095470)	Asap2 (ENSMUSG00000052632)	Itgb1bp1 (ENSMUSG00000062352)	Cpsf3 (ENSMUSG00000054309)	Iah1 (ENSMUSG00000062054)	Adam17 (ENSMUSG00000052593)	Ywhaq (ENSMUSG00000076432)	9030624G23Rik (ENSMUSG00000073158)	Taf1b (ENSMUSG00000059669) #21	Grhl1 (ENSMUSG00000020656) #22	Klf11 (ENSMUSG00000020653) #23	Cys1 (ENSMUSG00000062563)	Rrm2 (ENSMUSG00000020649) #25	Mboat2 (ENSMUSG00000020646) #26	Kidins220 (ENSMUSG00000036333) #27	Id2 (ENSMUSG00000020644) #28	Rnf144a (ENSMUSG00000020642) #31	Rsad2 (ENSMUSG00000020641) #32	Cmpk2 (ENSMUSG00000020638)	Sox11 (ENSMUSG00000063632)	Dcdc2c (ENSMUSG00000020633)	Allc (ENSMUSG00000020636)	Colec11 (ENSMUSG00000036655)	Rps7 (ENSMUSG00000061477)	Rnaseh1 (ENSMUSG00000020630)
Ryukyu mouse	MODERN SPECIES	3	Rock2 (MGP_CAROLIEiJ_G0017630)	MGP_CAROLIEiJ_G0017631	MGP_CAROLIEiJ_G0017632	Kcnf1 (MGP_CAROLIEiJ_G0017633)	Pdia6 (MGP_CAROLIEiJ_G0017634)	Atp6v1c2 (MGP_CAROLIEiJ_G0017635)	Nol10 (MGP_CAROLIEiJ_G0017636)	Odc1 (MGP_CAROLIEiJ_G0017637)	Asap2 (MGP_CAROLIEiJ_G0017638)	Itgb1bp1 (MGP_CAROLIEiJ_G0017639)	Cpsf3 (MGP_CAROLIEiJ_G0017640)	Iah1 (MGP_CAROLIEiJ_G0017641)	Adam17 (MGP_CAROLIEiJ_G0017642)	Ywhaq (MGP_CAROLIEiJ_G0017643)	Taf1b (MGP_CAROLIEiJ_G0017644) #21	Grhl1 (MGP_CAROLIEiJ_G0017645) #22	Klf11 (MGP_CAROLIEiJ_G0017646) #23	Cys1 (MGP_CAROLIEiJ_G0017647)	Rrm2 (MGP_CAROLIEiJ_G0017648) #25	Mboat2 (MGP_CAROLIEiJ_G0017649) #26	Kidins220 (MGP_CAROLIEiJ_G0017650) #27	MGP_CAROLIEiJ_G0017651 #28	Rnf144a (MGP_CAROLIEiJ_G0017652) #31	Rsad2 (MGP_CAROLIEiJ_G0017653) #32	Cmpk2 (MGP_CAROLIEiJ_G0017654)	Sox11 (MGP_CAROLIEiJ_G0017655)	MGP_CAROLIEiJ_G0017656	Allc (MGP_CAROLIEiJ_G0017657)	Colec11 (MGP_CAROLIEiJ_G0017658)	Rps7 (MGP_CAROLIEiJ_G0017659)	Rnaseh1 (MGP_CAROLIEiJ_G0017660)
Shrew mouse	MODERN SPECIES	20	Rock2 (MGP_PahariEiJ_G0029387)	Pqlc3 (MGP_PahariEiJ_G0029388)	MGP_PahariEiJ_G0029389	Kcnf1 (MGP_PahariEiJ_G0029390)	Pdia6 (MGP_PahariEiJ_G0029391)	Atp6v1c2 (MGP_PahariEiJ_G0029392)	Nol10 (MGP_PahariEiJ_G0029393)	Odc1 (MGP_PahariEiJ_G0029394)	Asap2 (MGP_PahariEiJ_G0029395)	Itgb1bp1 (MGP_PahariEiJ_G0029396)	Cpsf3 (MGP_PahariEiJ_G0029397)	Iah1 (MGP_PahariEiJ_G0029398)	Adam17 (MGP_PahariEiJ_G0029399)	MGP_PahariEiJ_G0029400	MGP_PahariEiJ_G0029401 #21	MGP_PahariEiJ_G0029402 #22	Klf11 (MGP_PahariEiJ_G0029403) #23	Cys1 (MGP_PahariEiJ_G0029404)	MGP_PahariEiJ_G0029405 #25	Mboat2 (MGP_PahariEiJ_G0029407) #26	Kidins220 (MGP_PahariEiJ_G0029408) #27	MGP_PahariEiJ_G0029409 #28	Rnf144a (MGP_PahariEiJ_G0029410) #31	Rsad2 (MGP_PahariEiJ_G0029411) #32	Cmpk2 (MGP_PahariEiJ_G0029412)	Sox11 (MGP_PahariEiJ_G0029413)	MGP_PahariEiJ_G0029414	Allc (MGP_PahariEiJ_G0029415)	Colec11 (MGP_PahariEiJ_G0029416)	MGP_PahariEiJ_G0029417	Rnaseh1 (MGP_PahariEiJ_G0029418)
Rat	MODERN SPECIES	16	Pdia6 (ENSRNOG00000050197)	Atp6v1c2 (ENSRNOG00000050553)	Nol10 (ENSRNOG00000005344)	AABR07063703.1 (ENSRNOG00000046279)	Odc1 (ENSRNOG00000005424)	LOC120093238 (ENSRNOG00000032523)	Hpcal1 (ENSRNOG00000005492)	Asap2 (ENSRNOG00000061519)	Itgb1bp1 (ENSRNOG00000059402)	Cpsf3 (ENSRNOG00000052418)	Iah1 (ENSRNOG00000060853)	Adam17 (ENSRNOG00000060694)	Ywhaq (ENSRNOG00000051650)	Taf1b (ENSRNOG00000061415) #21	Rbm34-ps1 (ENSRNOG00000065550)	Grhl1 (ENSRNOG00000054989) #22	Klf11 (ENSRNOG00000054259) #23	Cys1 (ENSRNOG00000058891)	Rrm2 (ENSRNOG00000054286) #25	Mboat2 (ENSRNOG00000061050) #26	Kidins220 (ENSRNOG00000023176) #27	LOC120093241 (ENSRNOG00000062523)	Id2 (ENSRNOG00000007237) #28	Rnf144a (ENSRNOG00000007370) #31	Rsad2 (ENSRNOG00000007539) #32	Cmpk2 (ENSRNOG00000007690)	Sox11 (ENSRNOG00000030034)	ENSRNOG00000068283	ENSRNOG00000069562	Dcdc2c (ENSRNOG00000067604)	ENSRNOG00000070424