Bilateria ANCESTRAL SPECIES ENSGT00390000015871 #22 Chordata ANCESTRAL SPECIES ENSGT00390000015871 #22 Vertebrata ANCESTRAL SPECIES ENSGT00390000015871 #22 Gnathostomata ANCESTRAL SPECIES 238 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000155393.c.b ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969 ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 Euteleostomi ANCESTRAL SPECIES 8 ENSGT00390000003248.b ENSGT00940000164689 ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00950000183117.b ENSGT00940000153804.A ENSGT00940000155086.A ENSGT00940000166976 Actinopterygii ANCESTRAL SPECIES 4 ENSGT00940000160216 ENSGT00950000183149.A ENSGT00940000156731 ENSGT00390000001029 ENSGT00940000159246 ENSGT00940000160233 ENSGT00390000003248.b ENSGT00940000164689 ENSGT00940000158011 ENSGT00390000018056 ENSGT01100000265193 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.b.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00950000183117.b ENSGT00940000153804.A ENSGT00940000155086.A ENSGT00940000166976 Neopterygii ANCESTRAL SPECIES 40 ENSGT00950000183056.B.b ENSGT00940000160216 ENSGT00950000183149.A ENSGT00940000156731 ENSGT00390000001029 ENSGT00940000159246 ENSGT00940000160233 ENSGT00390000003248.b ENSGT00940000164689 ENSGT00940000158011 ENSGT00390000018056 ENSGT01100000265193 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.b.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00990000204685 Osteoglossocephalai ANCESTRAL SPECIES 127 ENSGT00950000182843.b ENSGT00940000159618 ENSGT00940000160510 ENSGT00950000183080.a.b.a.b ##7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00970000196942 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00390000014654 #30 ENSGT00940000163032 #29 ENSGT00990000204685 Clupeocephala ANCESTRAL SPECIES 105 ENSGT00950000183080.a.b.a.b ##7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00970000196942 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000168601 ENSGT01030000234528.B.b.a.a.a.c.b ENSGT00940000165535 #17 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000171212 ENSGT00940000159556 #34 Euteleosteomorpha ANCESTRAL SPECIES 10 ENSGT00940000154756.A #12 ENSGT00940000177117 #10 ENSGT00940000177473 ENSGT00970000196942 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000168601 ENSGT00940000165535 #17 ENSGT01030000234528.B.b.a.a.a.c.b ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000171212 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 Acanthomorphata ANCESTRAL SPECIES ENSGT00940000159618 ENSGT00940000160510 ENSGT00940000165468 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00970000196942 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000165535 #17 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000171212 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 Euacanthomorphacea ANCESTRAL SPECIES 4 ENSGT00940000160510 ENSGT00950000183080.a.b.b.a.a #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.B.u.b ##12 ENSGT00970000196942 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000165535 #17 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT01030000238439 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000171212 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 Percomorphaceae ANCESTRAL SPECIES 6 ENSGT00940000168428.a ##11 ENSGT00940000168428.b.b.b ##11 ENSGT00940000154756.B.v ##12 ENSGT00940000177473 ENSGT00940000168428.b.b.a #11 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000165535 #17 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT01030000238439 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000171212 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 Percomorphaceae_B ANCESTRAL SPECIES 8 ENSGT00940000159618 ENSGT00940000160510 ENSGT00950000183080.a.b.b.a.a #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.B.u.b ##12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000165535 #17 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT01030000238439 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000171212 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 Ovalentaria ANCESTRAL SPECIES 5 ENSGT00940000177273 ENSGT00940000168428.b.b.b ##11 ENSGT00940000154756.B.u.a ##12 ENSGT00940000177473 ENSGT00940000168428.b.b.a #11 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000165535 #17 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT01030000238439 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000171212 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 Ovalentaria_B ANCESTRAL SPECIES 6 ENSGT00940000155815.q #9 ENSGT00940000154756.B.v ##12 ENSGT00940000177117 #10 ENSGT00940000177473 ENSGT00940000168428.b.b.a #11 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000165535 #17 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 ENSGT00950000182913.B.e #37 Cichlidae ANCESTRAL SPECIES 2 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.A #12 ENSGT00940000177117 #10 ENSGT00940000168428.b.a ##11 ENSGT00940000154756.B.v ##12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000165535 #17 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 ENSGT00950000182913.B.e #37 Pseudocrenilabrinae ANCESTRAL SPECIES 7 ENSGT00940000159618 ENSGT00940000160510 ENSGT00950000183080.a.b.b.a.a #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000165535 #17 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 ENSGT00950000182913.B.e #37 Pseudocrenilabrinae_A ANCESTRAL SPECIES 4 ENSGT00940000159618 ENSGT00940000160510 ENSGT00950000183080.a.b.b.a.a #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000165535 #17 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 ENSGT00950000182913.B.e #37 Haplochromini ANCESTRAL SPECIES 2 ENSGT00950000183080.a.b.b.a.a #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000177117 #10 ENSGT00940000168428.b.b.a #11 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000165535 #17 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 ENSGT00950000182913.B.e #37 Haplochromini_A ANCESTRAL SPECIES 3 ENSGT00950000183080.a.b.b.a.a #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000177117 #10 ENSGT00940000168428.b.b.a #11 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000165535 #17 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 ENSGT00950000182913.B.e #37 Zebra mbuna MODERN SPECIES 1100 guk1a (ENSMZEG00005025004) #9 ENSMZEG00005025005 #12 ENSMZEG00005025007 #10 ENSMZEG00005025008 #11 ENSMZEG00005025009 ENSMZEG00005025010 #12 ENSMZEG00005025011 #12 atg9b (ENSMZEG00005025014) #13 abcb8 (ENSMZEG00005025019) #14 cdk5 (ENSMZEG00005025020) #15 ENSMZEG00005025031 zgc:92591 (ENSMZEG00005025035) #18 asb10 (ENSMZEG00005025037) #19 gbx1 (ENSMZEG00005025040) #20 AGAP3 (ENSMZEG00005025043) #21 RB1CC1 (ENSMZEG00005025049) #22 ENSMZEG00005025056 #23 pcmtd1 (ENSMZEG00005025058) #24 SNTG1 (ENSMZEG00005025059) #25 snai2 (ENSMZEG00005025060) #26 ube2v2 (ENSMZEG00005025061) #27 mcm4 (ENSMZEG00005025062) #28 ENSMZEG00005025063 #30 cebpd (ENSMZEG00005025064) #29 mapre2 (ENSMZEG00005025065) #31 dtna (ENSMZEG00005025066) #32 KLHL14 (ENSMZEG00005025067) #34 CACNA1E (ENSMZEG00005025068) #35 ENSMZEG00005025069 #36 rpe65a (ENSMZEG00005025070) #37 ENSMZEG00005025071 Eastern happy MODERN SPECIES 9 ENSACLG00000017562 ENSACLG00000017571 #11 ENSACLG00000017577 #11 ENSACLG00000017604 #12 ENSACLG00000017610 #12 ENSACLG00000017630 #12 atg9b (ENSACLG00000017683) #13 abcb8 (ENSACLG00000017717) #14 cdk5 (ENSACLG00000017765) #15 ENSACLG00000017804 #16 ENSACLG00000017846 #16 zgc:92591 (ENSACLG00000017861) #18 asb10 (ENSACLG00000017868) #19 gbx1 (ENSACLG00000017884) #20 AGAP3 (ENSACLG00000017938) #21 RB1CC1 (ENSACLG00000018043) #22 ENSACLG00000018270 #23 pcmtd1 (ENSACLG00000018377) #24 SNTG1 (ENSACLG00000018409) #25 snai2 (ENSACLG00000018551) #26 ube2v2 (ENSACLG00000018591) #27 mcm4 (ENSACLG00000018617) #28 ENSACLG00000018702 #30 cebpd (ENSACLG00000018739) #29 mapre2 (ENSACLG00000018775) #31 dtna (ENSACLG00000018833) #32 ENSACLG00000019265 #33 KLHL14 (ENSACLG00000019388) #34 CACNA1E (ENSACLG00000019459) #35 ENSACLG00000019546 #36 rpe65a (ENSACLG00000019561) #37 Lyretail cichlid MODERN SPECIES 300 ENSNBRG00000011266 #10 ENSNBRG00000011273 #12 ENSNBRG00000011285 ENSNBRG00000011300 ENSNBRG00000011318 #12 atg9b (ENSNBRG00000011390) #13 abcb8 (ENSNBRG00000011417) #14 cdk5 (ENSNBRG00000011455) #15 ENSNBRG00000011500 #16 ENSNBRG00000011534 #16 ENSNBRG00000011549 #17 zgc:92591 (ENSNBRG00000011561) #18 asb10 (ENSNBRG00000011582) #19 gbx1 (ENSNBRG00000011598) #20 AGAP3 (ENSNBRG00000011615) #21 RB1CC1 (ENSNBRG00000011655) #22 ENSNBRG00000011714 #23 pcmtd1 (ENSNBRG00000011723) #24 SNTG1 (ENSNBRG00000011748) #25 snai2 (ENSNBRG00000011785) #26 ube2v2 (ENSNBRG00000011801) #27 mcm4 (ENSNBRG00000011812) #28 cebpd (ENSNBRG00000011847) #29 mapre2 (ENSNBRG00000011876) #31 dtna (ENSNBRG00000011913) #32 KLHL14 (ENSNBRG00000011997) #34 CACNA1E (ENSNBRG00000012033) #35 ENSNBRG00000012122 #36 rpe65a (ENSNBRG00000012138) #37 SRSF11 (ENSNBRG00000012193) ENSNBRG00000012205 Pomacentridae ANCESTRAL SPECIES 6 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.B.v ##12 ENSGT00940000177117 #10 ENSGT00940000177473 ENSGT00940000168428.b.b.a #11 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000171212 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 Pomacentridae_A ANCESTRAL SPECIES 5 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.B.v ##12 ENSGT00940000177117 #10 ENSGT00940000177473 ENSGT00940000168428.b.b.a #11 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00800000125285 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 Amphiprion ANCESTRAL SPECIES 35 ENSGT00950000182843.b ENSGT00940000159618 ENSGT00940000160510 ENSGT00950000183080.a.b.b.a.a #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.B.v ##12 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00800000125285 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 Clown anemonefish MODERN SPECIES 865 ENSAOCG00000002158 #7 zgc:63882 (ENSAOCG00000001523) #8 guk1a (ENSAOCG00000020660) #9 ENSAOCG00000020708 #12 ENSAOCG00000020759 #12 ENSAOCG00000020793 #12 ENSAOCG00000020832 #12 atg9b (ENSAOCG00000020852) #13 abcb8 (ENSAOCG00000020931) #14 cdk5 (ENSAOCG00000021006) #15 ENSAOCG00000021063 zgc:92591 (ENSAOCG00000021083) #18 asb10 (ENSAOCG00000021104) #19 gbx1 (ENSAOCG00000021122) #20 AGAP3 (ENSAOCG00000021153) #21 RB1CC1 (ENSAOCG00000021262) #22 ENSAOCG00000021298 #23 pcmtd1 (ENSAOCG00000021321) #24 Orange clownfish MODERN SPECIES 1 ENSAPEG00000002230 #10 ENSAPEG00000002250 ##12 ENSAPEG00000002271 #12 ENSAPEG00000002295 #12 ENSAPEG00000002309 #12 ENSAPEG00000002320 #12 ENSAPEG00000002326 #12 atg9b (ENSAPEG00000002365) #13 abcb8 (ENSAPEG00000002379) #14 cdk5 (ENSAPEG00000002446) #15 ENSAPEG00000002526 zgc:92591 (ENSAPEG00000002594) #18 asb10 (ENSAPEG00000002599) #19 gbx1 (ENSAPEG00000002607) #20 AGAP3 (ENSAPEG00000002642) #21 RB1CC1 (ENSAPEG00000002710) #22 ENSAPEG00000002856 #23 ENSAPEG00000002880 #23 pcmtd1 (ENSAPEG00000002901) #24 SNTG1 (ENSAPEG00000002923) #25 ENSAPEG00000002976 snai2 (ENSAPEG00000002983) #26 ube2v2 (ENSAPEG00000002994) #27 mcm4 (ENSAPEG00000003037) #28 cebpd (ENSAPEG00000003115) #29 SPIDR (ENSAPEG00000003141) #30 mapre2 (ENSAPEG00000003154) #31 dtna (ENSAPEG00000003227) #32 ENSAPEG00000003391 KLHL14 (ENSAPEG00000003404) #34 CACNA1E (ENSAPEG00000003437) #35 Spiny chromis MODERN SPECIES 193 GRM5 (ENSAPOG00000018862) ctsc (ENSAPOG00000018782) RAB38 (ENSAPOG00000018737) fzd4 (ENSAPOG00000018721) atg9b (ENSAPOG00000018681) #13 abcb8 (ENSAPOG00000018667) #14 cdk5 (ENSAPOG00000018606) #15 ENSAPOG00000000506 #16 ENSAPOG00000018475 #16 zgc:92591 (ENSAPOG00000018452) #18 asb10 (ENSAPOG00000018432) #19 gbx1 (ENSAPOG00000018407) #20 AGAP3 (ENSAPOG00000018399) #21 RB1CC1 (ENSAPOG00000018325) #22 ST18 (ENSAPOG00000018204) #23 pcmtd1 (ENSAPOG00000018170) #24 SNTG1 (ENSAPOG00000018144) #25 Bicolor damselfish MODERN SPECIES 531 gnb5b (ENSSPAG00000021809) MYO5A (ENSSPAG00000021833) arpp19b (ENSSPAG00000021871) atosa (ENSSPAG00000021877) onecut1 (ENSSPAG00000021890) ENSSPAG00000021895 #17 zgc:92591 (ENSSPAG00000021898) #18 asb10 (ENSSPAG00000021909) #19 gbx1 (ENSSPAG00000021916) #20 AGAP3 (ENSSPAG00000021922) #21 RB1CC1 (ENSSPAG00000021938) #22 ENSSPAG00000021998 #23 ENSSPAG00000022014 #23 pcmtd1 (ENSSPAG00000022023) #24 SNTG1 (ENSSPAG00000022042) #25 snai2 (ENSSPAG00000022061) #26 Atherinomorphae ANCESTRAL SPECIES 4 ENSGT00940000155815.q #9 ENSGT00940000154756.B.v ##12 ENSGT00940000168428.b.a ##11 ENSGT00940000177473 ENSGT00940000154756.B.u.a ##12 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000165535 #17 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT01030000238439 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000171212 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 Cyprinodontiformes ANCESTRAL SPECIES 5 ENSGT00940000160510 ENSGT00950000183080.a.b.b.a.a #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.B.u.b ##12 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000165535 #17 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000171212 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 Aplocheiloidei ANCESTRAL SPECIES 11 ENSGT00940000160510 ENSGT00950000183080.a.b.b.a.a #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.B.u.b ##12 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000165535 #17 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 ENSGT00950000182913.B.e #37 Mangrove rivulus MODERN SPECIES 88 ENSKMAG00000004334 #7 zgc:63882 (ENSKMAG00000004347) #8 guk1a (ENSKMAG00000004364) #9 ENSKMAG00000004392 ##12 ENSKMAG00000004409 ##12 ENSKMAG00000004430 ##12 ENSKMAG00000004461 #12 atg9b (ENSKMAG00000004505) #13 abcb8 (ENSKMAG00000004537) #14 cdk5 (ENSKMAG00000004590) #15 asic1c (ENSKMAG00000004633) #16 zgc:92591 (ENSKMAG00000004698) #18 asb10 (ENSKMAG00000004706) #19 gbx1 (ENSKMAG00000004719) #20 AGAP3 (ENSKMAG00000004760) #21 RB1CC1 (ENSKMAG00000004862) #22 ST18 (ENSKMAG00000004969) #23 pcmtd1 (ENSKMAG00000005024) #24 SNTG1 (ENSKMAG00000005086) #25 snai2 (ENSKMAG00000005164) #26 ube2v2 (ENSKMAG00000005178) #27 mcm4 (ENSKMAG00000005201) #28 cebpd (ENSKMAG00000005255) #29 SPIDR (ENSKMAG00000005268) #30 mapre2 (ENSKMAG00000005341) #31 dtna (ENSKMAG00000005423) #32 ENSKMAG00000005603 KLHL14 (ENSKMAG00000005624) #34 CACNA1E (ENSKMAG00000005669) #35 RNF11 (ENSKMAG00000005772) #36 rpe65a (ENSKMAG00000005813) #37 Turquoise killifish MODERN SPECIES 1618 wnt9a (ENSNFUG00015011683) wnt3a (ENSNFUG00015011740) ENSNFUG00015011792 #7 C2H1ORF35 (ENSNFUG00015011822) #8 GUK1 (ENSNFUG00015011837) #9 ATG9B (ENSNFUG00015012089) #13 abcb8 (ENSNFUG00015012139) #14 cdk5 (ENSNFUG00015012468) #15 asic1c (ENSNFUG00015012539) #16 ENSNFUG00015012546 #17 zgc:92591 (ENSNFUG00015012548) #18 asb10 (ENSNFUG00015012552) #19 GBX1 (ENSNFUG00015012554) #20 AGAP3 (ENSNFUG00015012655) #21 ENSNFUG00015016065 RB1CC1 (ENSNFUG00015016079) #22 ST18 (ENSNFUG00015016175) #23 PCMTD1 (ENSNFUG00015016259) #24 SNTG1 (ENSNFUG00015016268) #25 SNAI2 (ENSNFUG00015016302) ENSNFUG00015016310 ube2v2 (ENSNFUG00015016312) #27 MCM4 (ENSNFUG00015016361) #28 CEBPD (ENSNFUG00015016467) #29 ENSNFUG00015016472 #30 MAPRE2 (ENSNFUG00015016481) #31 dtna (ENSNFUG00015016513) #32 ENSNFUG00015017029 #33 KLHL14 (ENSNFUG00015017040) #34 CACNA1E (ENSNFUG00015017202) #35 Nfu_g_1_020184 (ENSNFUG00015021750) #36 Cyprinodontoidei ANCESTRAL SPECIES 2 ENSGT00950000183080.a.b.b.a.a.e #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000165535 #17 ENSGT01030000234528.B.b.a.a.a.c.b.t.a ENSGT00950000182846.a.a.b.a.a.f ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000171212 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 Poeciliinae ANCESTRAL SPECIES 6 ENSGT00940000159618 ENSGT00940000160510 ENSGT00950000183080.a.b.b.a.a.f #7 ENSGT00950000183080.a.b.b.a.a.e #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000171212 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 Poecilia ANCESTRAL SPECIES 16 ENSGT00940000159618 ENSGT00940000160510 ENSGT00950000183080.a.b.b.a.a.f #7 ENSGT00950000183080.a.b.b.a.a.e #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000171212 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 Amazon molly MODERN SPECIES 279 wnt9a (ENSPFOG00000012510) wnt3a (ENSPFOG00000012574) ENSPFOG00000022917 #7 ENSPFOG00000012632 #7 zgc:63882 (ENSPFOG00000012658) #8 guk1a (ENSPFOG00000012680) #9 ENSPFOG00000012723 #12 atg9b (ENSPFOG00000013009) #13 abcb8 (ENSPFOG00000013125) #14 cdk5 (ENSPFOG00000013234) #15 asic1c (ENSPFOG00000013248) #16 zgc:92591 (ENSPFOG00000013426) #18 asb10 (ENSPFOG00000013428) #19 gbx1 (ENSPFOG00000013479) #20 AGAP3 (ENSPFOG00000013509) #21 RB1CC1 (ENSPFOG00000013941) #22 ST18 (ENSPFOG00000014046) #23 pcmtd1 (ENSPFOG00000014144) #24 SNTG1 (ENSPFOG00000014188) #25 snai2 (ENSPFOG00000014336) #26 ube2v2 (ENSPFOG00000014363) #27 mcm4 (ENSPFOG00000014379) #28 ENSPFOG00000014442 #30 cebpd (ENSPFOG00000020361) #29 mapre2 (ENSPFOG00000014482) #31 dtna (ENSPFOG00000014552) #32 ENSPFOG00000014606 #33 KLHL14 (ENSPFOG00000014609) #34 CACNA1E (ENSPFOG00000014641) #35 RNF11 (ENSPFOG00000014779) #36 rpe65a (ENSPFOG00000014790) #37 Guppy MODERN SPECIES 447 zgc:63882 (ENSPREG00000007758) #8 guk1a (ENSPREG00000007797) #9 ENSPREG00000007829 #12 ENSPREG00000007865 #12 ENSPREG00000007891 ENSPREG00000007908 #12 ENSPREG00000007930 #12 atg9b (ENSPREG00000007948) #13 abcb8 (ENSPREG00000007968) #14 cdk5 (ENSPREG00000008002) #15 asic1c (ENSPREG00000008045) #16 zgc:92591 (ENSPREG00000008106) #18 asb10 (ENSPREG00000008118) #19 gbx1 (ENSPREG00000008139) #20 AGAP3 (ENSPREG00000008165) #21 RB1CC1 (ENSPREG00000008267) #22 ST18 (ENSPREG00000008337) #23 pcmtd1 (ENSPREG00000008452) #24 SNTG1 (ENSPREG00000008482) #25 SNAI2 (ENSPREG00000008528) ube2v2 (ENSPREG00000008536) #27 mcm4 (ENSPREG00000008561) #28 cebpd (ENSPREG00000008610) #29 SPIDR (ENSPREG00000008640) #30 mapre2 (ENSPREG00000008676) #31 dtna (ENSPREG00000008725) #32 ENSPREG00000008889 #33 ENSPREG00000008904 KLHL14 (ENSPREG00000008926) #34 RNF11 (ENSPREG00000008943) #36 rpe65a (ENSPREG00000008958) #37 Platyfish MODERN SPECIES 20 guk1a (ENSXMAG00000027618) #9 ENSXMAG00000026855 #12 ENSXMAG00000029214 #10 ENSXMAG00000023267 ##12 ENSXMAG00000027041 #12 ENSXMAG00000024038 #12 ENSXMAG00000021592 #12 atg9b (ENSXMAG00000005722) #13 abcb8 (ENSXMAG00000006347) #14 cdk5 (ENSXMAG00000018810) #15 ENSXMAG00000010416 zgc:92591 (ENSXMAG00000018881) #18 asb10 (ENSXMAG00000018883) #19 gbx1 (ENSXMAG00000027732) #20 AGAP3 (ENSXMAG00000018898) #21 RB1CC1 (ENSXMAG00000018959) #22 ST18 (ENSXMAG00000018975) #23 pcmtd1 (ENSXMAG00000029433) #24 SNTG1 (ENSXMAG00000019006) #25 snai2 (ENSXMAG00000019030) #26 ube2v2 (ENSXMAG00000019038) #27 mcm4 (ENSXMAG00000019042) #28 cebpd (ENSXMAG00000019437) #29 SPIDR (ENSXMAG00000019057) #30 mapre2 (ENSXMAG00000019068) #31 dtna (ENSXMAG00000019076) #32 ENSXMAG00000026128 KLHL14 (ENSXMAG00000019119) #34 CACNA1E (ENSXMAG00000019132) #35 RNF11 (ENSXMAG00000029976) #36 rpe65a (ENSXMAG00000019141) #37 NAME_4 ANCESTRAL SPECIES 19 ENSGT00940000160510 ENSGT00950000183080.a.b.b.a.a.f #7 ENSGT00950000183080.a.b.b.a.a.e #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000165535 #17 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 ENSGT00950000182913.B.e #37 Mummichog MODERN SPECIES 314 guk1a (ENSFHEG00000011764) #9 ENSFHEG00000011803 #12 ENSFHEG00000011846 #12 ENSFHEG00000011884 #12 ENSFHEG00000011900 #12 ENSFHEG00000000698 #12 atg9b (ENSFHEG00000011940) #13 abcb8 (ENSFHEG00000011986) #14 cdk5 (ENSFHEG00000012060) #15 asic1c (ENSFHEG00000012088) #16 ENSFHEG00000012108 #17 zgc:92591 (ENSFHEG00000012118) #18 gbx1 (ENSFHEG00000012128) #20 asb10 (ENSFHEG00000012165) #19 ENSFHEG00000012330 #21 RB1CC1 (ENSFHEG00000012463) #22 ENSFHEG00000012480 #23 ENSFHEG00000012494 #23 pcmtd1 (ENSFHEG00000012507) #24 SNTG1 (ENSFHEG00000012554) #25 snai2 (ENSFHEG00000012561) #26 ube2v2 (ENSFHEG00000012580) #27 mcm4 (ENSFHEG00000012690) #28 cebpd (ENSFHEG00000012767) #29 SPIDR (ENSFHEG00000012783) #30 mapre2 (ENSFHEG00000012800) #31 dtna (ENSFHEG00000013122) #32 ENSFHEG00000013176 #33 KLHL14 (ENSFHEG00000013209) #34 ENSFHEG00000013220 #35 CACNA1E (ENSFHEG00000013252) #35 Sheepshead minnow MODERN SPECIES 1285 RB1CC1 (ENSCVAG00000006258) #22 ST18 (ENSCVAG00000006156) #23 pcmtd1 (ENSCVAG00000006148) #24 SNTG1 (ENSCVAG00000006141) #25 Oryzias ANCESTRAL SPECIES 12 ENSGT00950000183080.a.b.b.a.a #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.B.v ##12 ENSGT00940000168428.b.b.a #11 ENSGT00940000177473 ENSGT00940000154756.B.u.a ##12 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT01030000238439 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000171212 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 Oryzias_b ANCESTRAL SPECIES 8 ENSGT00940000159618 ENSGT00940000160510 ENSGT00950000183080.a.b.b.a.a #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.B.v ##12 ENSGT00940000168428.b.b.a #11 ENSGT00940000154756.A #12 ENSGT00390000014839.a.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT01030000238439 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000171212 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 Indian medaka MODERN SPECIES 10 wnt3a (ENSOMEG00000007627) ENSOMEG00000007598 #7 guk1a (ENSOMEG00000007565) #9 ENSOMEG00000007519 ##12 ENSOMEG00000007491 ##12 ENSOMEG00000007479 ##12 ENSOMEG00000007470 #11 ENSOMEG00000007455 #12 atg9b (ENSOMEG00000007421) #13 ENSOMEG00000000177 #14 cdk5 (ENSOMEG00000007307) #15 asic1c (ENSOMEG00000007204) #16 asb10 (ENSOMEG00000007076) #19 gbx1 (ENSOMEG00000007015) #20 AGAP3 (ENSOMEG00000006957) #21 RB1CC1 (ENSOMEG00000006857) #22 ENSOMEG00000000159 #23 pcmtd1 (ENSOMEG00000006710) #24 SNTG1 (ENSOMEG00000006675) #25 snai2 (ENSOMEG00000006591) #26 ube2v2 (ENSOMEG00000006578) #27 mcm4 (ENSOMEG00000006568) #28 SPIDR (ENSOMEG00000000152) #30 cebpd (ENSOMEG00000006472) #29 mapre2 (ENSOMEG00000006446) #31 dtna (ENSOMEG00000006419) #32 ENSOMEG00000006387 #32 ENSOMEG00000006364 KLHL14 (ENSOMEG00000006352) #34 CACNA1E (ENSOMEG00000006312) #35 RNF11 (ENSOMEG00000006241) #36 Javanese ricefish MODERN SPECIES 8 wnt9a (ENSOJAG00000022824) wnt3a (ENSOJAG00000022812) arf2b (ENSOJAG00000022804) #7 zgc:63882 (ENSOJAG00000022794) #8 guk1a (ENSOJAG00000022785) #9 ENSOJAG00000022768 #12 ENSOJAG00000022738 #12 atg9b (ENSOJAG00000022732) #13 ENSOJAG00000022726 #13 abcb8 (ENSOJAG00000022678) #14 ENSOJAG00000022672 asic1c (ENSOJAG00000022638) #16 asb10 (ENSOJAG00000022629) #19 gbx1 (ENSOJAG00000022627) #20 AGAP3 (ENSOJAG00000022147) #21 RB1CC1 (ENSOJAG00000022033) #22 ENSOJAG00000022018 ST18 (ENSOJAG00000022005) #23 ENSOJAG00000021990 pcmtd1 (ENSOJAG00000021979) #24 SNTG1 (ENSOJAG00000021958) #25 snai2 (ENSOJAG00000021947) #26 ube2v2 (ENSOJAG00000021916) #27 mcm4 (ENSOJAG00000021723) #28 cebpd (ENSOJAG00000021709) #29 SPIDR (ENSOJAG00000021701) #30 mapre2 (ENSOJAG00000021693) #31 dtna (ENSOJAG00000021060) #32 KLHL14 (ENSOJAG00000020973) #34 CACNA1E (ENSOJAG00000018942) #35 RNF11 (ENSOJAG00000018858) #36 Oryzias_a ANCESTRAL SPECIES 7 ENSGT00940000159618 ENSGT00940000160510 ENSGT00950000183080.a.b.b.a.a #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.A #12 ENSGT00940000177473 ENSGT00940000154756.B.u.a ##12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000171212 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 ENSGT00950000182913.B.e #37 Japanese Medaka HdrR MODERN SPECIES 8 ENSORLG00000025989 ##12 ENSORLG00000028027 ##12 ENSORLG00000024770 ENSORLG00000026200 ##11 ENSORLG00000029183 ENSORLG00000030589 ##12 ENSORLG00000028404 ##12 ENSORLG00000022942 #12 atg9b (ENSORLG00000017550) #13 abcb8 (ENSORLG00000017547) #14 cdk5 (ENSORLG00000017539) #15 asic1c (ENSORLG00000017530) #16 asb10 (ENSORLG00000017524) #19 gbx1 (ENSORLG00000017521) #20 AGAP3 (ENSORLG00000017516) #21 RB1CC1 (ENSORLG00000017508) #22 ENSORLG00000017500 #23 pcmtd1 (ENSORLG00000017490) #24 SNTG1 (ENSORLG00000017486) #25 snai2 (ENSORLG00000017475) #26 ube2v2 (ENSORLG00000026484) #27 mcm4 (ENSORLG00000017467) #28 cebpd (ENSORLG00000022254) #29 SPIDR (ENSORLG00000017445) #30 mapre2 (ENSORLG00000017442) #31 dtna (ENSORLG00000017435) #32 ENSORLG00000022595 KLHL14 (ENSORLG00000017430) #34 ENSORLG00000022887 #35 ENSORLG00000017409 #35 RNF11 (ENSORLG00000029728) #36 Chinese medaka MODERN SPECIES 770 snap47 (ENSOSIG00000015251) wnt9a (ENSOSIG00000015254) wnt3a (ENSOSIG00000015255) ENSOSIG00000015298 #7 zgc:63882 (ENSOSIG00000015300) #8 guk1a (ENSOSIG00000015302) #9 ENSOSIG00000015306 #12 ENSOSIG00000015309 atg9b (ENSOSIG00000015312) #13 abcb8 (ENSOSIG00000015397) #14 cdk5 (ENSOSIG00000015647) #15 asic1c (ENSOSIG00000015648) #16 asb10 (ENSOSIG00000015654) #19 gbx1 (ENSOSIG00000015657) #20 AGAP3 (ENSOSIG00000015672) #21 RB1CC1 (ENSOSIG00000015917) #22 ENSOSIG00000015922 #23 pcmtd1 (ENSOSIG00000015923) #24 SNTG1 (ENSOSIG00000015925) #25 snai2 (ENSOSIG00000015927) #26 ube2v2 (ENSOSIG00000015928) #27 mcm4 (ENSOSIG00000015948) #28 cebpd (ENSOSIG00000016781) #29 SPIDR (ENSOSIG00000016783) #30 mapre2 (ENSOSIG00000016787) #31 dtna (ENSOSIG00000016833) #32 KLHL14 (ENSOSIG00000016882) #34 CACNA1E (ENSOSIG00000017146) #35 RNF11 (ENSOSIG00000022801) #36 rpe65a (ENSOSIG00000022837) #37 ENSOSIG00000022971 Percomorphaceae_D ANCESTRAL SPECIES 6 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.A #12 ENSGT00940000177117 #10 ENSGT00940000154756.B.v ##12 ENSGT00940000177473 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000165535 #17 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT01030000238439 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 Anabantoidei ANCESTRAL SPECIES 18 ENSGT00950000182843.b ENSGT00940000159618 ENSGT00940000160510 ENSGT00950000183080.a.b.b.a.a #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 ENSGT00950000182913.B.e #37 Zig-zag eel MODERN SPECIES 8 wnt9a (ENSMAMG00000024682) wnt3a (ENSMAMG00000025289) ARF1 (ENSMAMG00000026228) #7 C1orf35 (ENSMAMG00000016191) #8 GUK1 (ENSMAMG00000016176) #9 atg9b (ENSMAMG00000016043) #13 ENSMAMG00000016011 #14 cdk5 (ENSMAMG00000016001) #15 ENSMAMG00000015979 #16 ENSMAMG00000015966 #16 ENSMAMG00000015963 #17 zgc:92591 (ENSMAMG00000015956) #18 asb10 (ENSMAMG00000015919) #19 gbx1 (ENSMAMG00000015894) #20 AGAP3 (ENSMAMG00000015816) #21 RB1CC1 (ENSMAMG00000015728) #22 ENSMAMG00000026024 ENSMAMG00000015700 #23 pcmtd1 (ENSMAMG00000015683) #24 SNTG1 (ENSMAMG00000015642) #25 snai2 (ENSMAMG00000015632) #26 ube2v2 (ENSMAMG00000015617) #27 mcm4 (ENSMAMG00000015571) #28 cebpd (ENSMAMG00000015447) #29 SPIDR (ENSMAMG00000015367) #30 mapre2 (ENSMAMG00000015344) #31 dtna (ENSMAMG00000015303) #32 ENSMAMG00000015293 #33 KLHL14 (ENSMAMG00000015269) #34 ENSMAMG00000015076 #35 ENSMAMG00000015046 #36 Carangaria ANCESTRAL SPECIES 5 ENSGT00940000159618 ENSGT00940000160510 ENSGT00950000183080.a.b.b.a.a #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000165535 #17 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 ENSGT00950000182913.B.e #37 Carangaria_A ANCESTRAL SPECIES 2 ENSGT00950000183080.a.b.b.a.a #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000165535 #17 ENSGT01030000234528.B.b.a.a.a.c.b ENSGT01030000234528.B.b.a.a.a.c.a ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 ENSGT00950000182913.B.e #37 Seriola ANCESTRAL SPECIES ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.A #12 ENSGT00940000177117 #10 ENSGT00940000154756.B.v ##12 ENSGT00940000168428.b.b.a #11 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000165535 #17 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 ENSGT00950000182913.B.e #37 Yellowtail amberjack MODERN SPECIES 2638 ENSSLDG00000013874 ##12 ENSSLDG00000013851 #10 ENSSLDG00000013840 ##12 ENSSLDG00000013825 ##11 ENSSLDG00000013810 #11 ENSSLDG00000013785 ##12 ENSSLDG00000013764 #12 atg9b (ENSSLDG00000013737) #13 abcb8 (ENSSLDG00000013646) #14 cdk5 (ENSSLDG00000013609) #15 asic1c (ENSSLDG00000013563) #16 zgc:92591 (ENSSLDG00000013535) #18 asb10 (ENSSLDG00000013521) #19 GBX1 (ENSSLDG00000013509) #20 AGAP3 (ENSSLDG00000013245) #21 RB1CC1 (ENSSLDG00000013089) #22 ST18 (ENSSLDG00000012990) #23 pcmtd1 (ENSSLDG00000012936) #24 SNTG1 (ENSSLDG00000012880) #25 snai2 (ENSSLDG00000012852) #26 ube2v2 (ENSSLDG00000012831) #27 mcm4 (ENSSLDG00000012781) #28 cebpd (ENSSLDG00000012735) #29 SPIDR (ENSSLDG00000012698) #30 mapre2 (ENSSLDG00000012676) #31 dtna (ENSSLDG00000012390) #32 ENSSLDG00000012335 KLHL14 (ENSSLDG00000012303) #34 ENSSLDG00000012281 #35 CACNA1E (ENSSLDG00000012200) #35 RNF11 (ENSSLDG00000012182) #36 Greater amberjack MODERN SPECIES 99 ENSSDUG00000017370 #12 ENSSDUG00000017384 #10 ENSSDUG00000017391 ##12 ENSSDUG00000017412 #12 ENSSDUG00000017420 #12 ENSSDUG00000017429 #12 ENSSDUG00000017448 abcb8 (ENSSDUG00000017474) #14 cdk5 (ENSSDUG00000017508) #15 asic1c (ENSSDUG00000017542) #16 ENSSDUG00000017561 #17 zgc:92591 (ENSSDUG00000017571) #18 asb10 (ENSSDUG00000017671) #19 gbx1 (ENSSDUG00000017685) #20 AGAP3 (ENSSDUG00000017701) #21 RB1CC1 (ENSSDUG00000017754) #22 ST18 (ENSSDUG00000017880) #23 pcmtd1 (ENSSDUG00000017919) #24 SNTG1 (ENSSDUG00000017958) #25 snai2 (ENSSDUG00000018060) #26 ube2v2 (ENSSDUG00000018070) #27 mcm4 (ENSSDUG00000018088) #28 cebpd (ENSSDUG00000018137) #29 SPIDR (ENSSDUG00000018162) #30 mapre2 (ENSSDUG00000018190) #31 dtna (ENSSDUG00000018228) #32 ENSSDUG00000018378 #33 KLHL14 (ENSSDUG00000018412) #34 CACNA1E (ENSSDUG00000018484) #35 RNF11 (ENSSDUG00000018698) #36 rpe65a (ENSSDUG00000018708) #37 Barramundi perch MODERN SPECIES 69 guk1a (ENSLCAG00010004457) #9 ENSLCAG00010004471 #7 zgc:63882 (ENSLCAG00010004493) #8 ENSLCAG00010004502 #12 ENSLCAG00010004515 ##11 atg9b (ENSLCAG00010004522) #13 abcb8 (ENSLCAG00010004603) #14 cdk5 (ENSLCAG00010004830) #15 ENSLCAG00010004858 #16 ENSLCAG00010004878 #16 zgc:92591 (ENSLCAG00010004894) #18 asb10 (ENSLCAG00010004897) #19 gbx1 (ENSLCAG00010004902) #20 AGAP3 (ENSLCAG00010004970) #21 ENSLCAG00010005091 RB1CC1 (ENSLCAG00010005128) #22 ST18 (ENSLCAG00010005184) #23 pcmtd1 (ENSLCAG00010005197) #24 SNTG1 (ENSLCAG00010005205) #25 snai2 (ENSLCAG00010005214) #26 ube2v2 (ENSLCAG00010005223) #27 mcm4 (ENSLCAG00010005262) #28 cebpd (ENSLCAG00010005325) #29 SPIDR (ENSLCAG00010005335) #30 mapre2 (ENSLCAG00010005352) #31 dtna (ENSLCAG00010005419) #32 ENSLCAG00010005547 #33 KLHL14 (ENSLCAG00010005557) #34 CACNA1E (ENSLCAG00010006026) #35 RNF11 (ENSLCAG00010008706) #36 rpe65a (ENSLCAG00010008728) #37 Pleuronectoidei ANCESTRAL SPECIES 1 ENSGT00940000160510 ENSGT00950000183080.a.b.b.a.a #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000168428.b.b.a #11 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT00940000165535 #17 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 ENSGT00950000182913.B.e #37 Turbot MODERN SPECIES 19 wnt9a (ENSSMAG00000018760) wnt3a (ENSSMAG00000018775) ENSSMAG00000018796 #7 zgc:63882 (ENSSMAG00000018814) #8 GUK1 (ENSSMAG00000018836) #9 ENSSMAG00000018861 #12 atg9b (ENSSMAG00000018960) #13 ENSSMAG00000018981 #14 cdk5 (ENSSMAG00000019009) #15 asic1c (ENSSMAG00000019049) #16 ENSSMAG00000025562 #17 zgc:92591 (ENSSMAG00000019080) #18 asb10 (ENSSMAG00000019166) #19 gbx1 (ENSSMAG00000019176) #20 AGAP3 (ENSSMAG00000019184) #21 RB1CC1 (ENSSMAG00000019193) #22 ENSSMAG00000019253 #23 pcmtd1 (ENSSMAG00000019275) #24 ENSSMAG00000023249 SNTG1 (ENSSMAG00000019294) #25 snai2 (ENSSMAG00000019364) #26 ENSSMAG00000019379 ube2v2 (ENSSMAG00000024137) #27 mcm4 (ENSSMAG00000019411) #28 cebpd (ENSSMAG00000019584) #29 SPIDR (ENSSMAG00000019476) #30 mapre2 (ENSSMAG00000019607) #31 dtna (ENSSMAG00000019619) #32 ENSSMAG00000019772 #33 KLHL14 (ENSSMAG00000019795) #34 ENSSMAG00000019815 #35 Tongue sole MODERN SPECIES 12 ENSCSEG00000011262 ENSCSEG00000011248 ##12 ENSCSEG00000011234 ##12 ENSCSEG00000011222 ENSCSEG00000011215 ##12 ENSCSEG00000011207 #11 ENSCSEG00000011191 #12 atg9b (ENSCSEG00000011173) #13 abcb8 (ENSCSEG00000011141) #14 cdk5 (ENSCSEG00000011124) #15 asic1c (ENSCSEG00000011093) #16 zgc:92591 (ENSCSEG00000011088) #18 asb10 (ENSCSEG00000011081) #19 gbx1 (ENSCSEG00000011077) #20 AGAP3 (ENSCSEG00000011034) #21 RB1CC1 (ENSCSEG00000010957) #22 ST18 (ENSCSEG00000010940) #23 pcmtd1 (ENSCSEG00000010930) #24 GPAA1 (ENSCSEG00000010913) exosc4 (ENSCSEG00000010906) ENSCSEG00000010891 ENSCSEG00000010883 ENSCSEG00000010783 ENSCSEG00000010760 ZNF830 (ENSCSEG00000010754) ENSCSEG00000010734 ENSCSEG00000010721 RNF11 (ENSCSEG00000010710) #36 rpe65a (ENSCSEG00000010662) #37 CACNA1E (ENSCSEG00000010561) #35 ENSCSEG00000010554 Eupercaria ANCESTRAL SPECIES 24 ENSGT00950000183080.a.b.b.a.a #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.B.v ##12 ENSGT00940000177117 #10 ENSGT00940000168428.b.b.a #11 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT01030000238439 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 Eupecaria_A ANCESTRAL SPECIES 8 ENSGT00950000183080.a.b.b.a.a #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.B.v ##12 ENSGT00940000177117 #10 ENSGT00940000168428.b.b.a #11 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT01030000238439 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 Ballan wrasse MODERN SPECIES 336 ENSLBEG00000001872 #12 ENSLBEG00000001837 #10 ENSLBEG00000001816 #11 ENSLBEG00000001714 #12 ENSLBEG00000001687 #12 ENSLBEG00000001649 #12 ENSLBEG00000001624 #13 abcb8 (ENSLBEG00000001537) #14 cdk5 (ENSLBEG00000001455) #15 ENSLBEG00000001420 #16 ENSLBEG00000001405 #16 zgc:92591 (ENSLBEG00000001382) #18 asb10 (ENSLBEG00000001325) #19 gbx1 (ENSLBEG00000001309) #20 AGAP3 (ENSLBEG00000001302) #21 RB1CC1 (ENSLBEG00000001203) #22 ST18 (ENSLBEG00000001117) #23 pcmtd1 (ENSLBEG00000001073) #24 SNTG1 (ENSLBEG00000000987) #25 snai2 (ENSLBEG00000000972) #26 ube2v2 (ENSLBEG00000000946) #27 Eupecaria_B ANCESTRAL SPECIES 8 ENSGT00940000159618 ENSGT00940000160510 ENSGT00950000183080.a.b.b.a.a #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.B.v ##12 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT01030000238439 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 Eupecaria_C ANCESTRAL SPECIES 10 ENSGT00950000182843.b ENSGT00940000159618 ENSGT00940000160510 ENSGT00950000183080.a.b.b.a.a #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154511.b ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 European seabass MODERN SPECIES snap47 (ENSDLAG00005026038) wnt9a (ENSDLAG00005026035) wnt3a (ENSDLAG00005026033) ENSDLAG00005033446 #7 C1orf35 (ENSDLAG00005030355) #8 GUK1 (ENSDLAG00005026026) #9 ENSDLAG00005026018 #12 atg9b (ENSDLAG00005026009) #13 ENSDLAG00005025991 #14 cdk5 (ENSDLAG00005025973) #15 asic1c (ENSDLAG00005025961) #16 zgc:92591 (ENSDLAG00005021322) #18 asb10 (ENSDLAG00005025956) #19 gbx1 (ENSDLAG00005026693) #20 AGAP3 (ENSDLAG00005025915) #21 RB1CC1 (ENSDLAG00005025897) #22 ST18 (ENSDLAG00005025891) #23 pcmtd1 (ENSDLAG00005025888) #24 SNTG1 (ENSDLAG00005025887) #25 SNAI2 (ENSDLAG00005025886) ube2v2 (ENSDLAG00005025878) #27 cebpd (ENSDLAG00005025803) #29 mcm4 (ENSDLAG00005025799) #28 mapre2 (ENSDLAG00005025797) #31 dtna (ENSDLAG00005025785) #32 ENSDLAG00005033233 #33 KLHL14 (ENSDLAG00005025780) #34 ENSDLAG00005025342 #35 ENSDLAG00005025296 #37 ENSDLAG00005025293 ENSDLAG00005025283 Large yellow croaker MODERN SPECIES 1 jmjd4 (ENSLCRG00005019492) snap47 (ENSLCRG00005019493) wnt9a (ENSLCRG00005019494) wnt3a (ENSLCRG00005019495) ENSLCRG00005019500 #7 zgc:63882 (ENSLCRG00005019501) #8 guk1a (ENSLCRG00005019504) #9 atg9b (ENSLCRG00005019515) #13 abcb8 (ENSLCRG00005019519) #14 cdk5 (ENSLCRG00005019567) #15 asic1c (ENSLCRG00005019590) #16 zgc:92591 (ENSLCRG00005019609) #18 asb10 (ENSLCRG00005000087) #19 gbx1 (ENSLCRG00005000099) #20 AGAP3 (ENSLCRG00005000222) #21 RB1CC1 (ENSLCRG00005000402) #22 pcmtd1 (ENSLCRG00005000459) #24 SNTG1 (ENSLCRG00005000463) #25 SNAI2 (ENSLCRG00005000465) ube2v2 (ENSLCRG00005000466) #27 mcm4 (ENSLCRG00005000475) #28 cebpd (ENSLCRG00005000530) #29 SPIDR (ENSLCRG00005000533) #30 mapre2 (ENSLCRG00005000534) #31 dtna (ENSLCRG00005000536) #32 ENSLCRG00005000559 #33 KLHL14 (ENSLCRG00005000561) #34 CACNA1E (ENSLCRG00005000586) #35 RNF11 (ENSLCRG00005003646) #36 rpe65a (ENSLCRG00005003653) #37 SRSF11 (ENSLCRG00005003711) Pike perch MODERN SPECIES 12 wnt9a (ENSSLUG00000018906) wnt3a (ENSSLUG00000018926) ENSSLUG00000018944 #7 zgc:63882 (ENSSLUG00000018953) #8 guk1a (ENSSLUG00000018960) #9 ENSSLUG00000018971 ENSSLUG00000018980 #12 atg9b (ENSSLUG00000018999) #13 abcb8 (ENSSLUG00000019021) #14 cdk5 (ENSSLUG00000000174) #15 asic1c (ENSSLUG00000000195) #16 zgc:92591 (ENSSLUG00000000212) #18 asb10 (ENSSLUG00000000218) #19 gbx1 (ENSSLUG00000000221) #20 AGAP3 (ENSSLUG00000000399) #21 RB1CC1 (ENSSLUG00000000803) #22 ENSSLUG00000000830 ENSSLUG00000000831 #23 pcmtd1 (ENSSLUG00000000835) #24 SNTG1 (ENSSLUG00000000840) #25 snai2 (ENSSLUG00000000846) #26 ube2v2 (ENSSLUG00000000853) #27 mcm4 (ENSSLUG00000000910) #28 cebpd (ENSSLUG00000000993) #29 SPIDR (ENSSLUG00000000997) #30 mapre2 (ENSSLUG00000001003) #31 dtna (ENSSLUG00000001044) #32 ENSSLUG00000001095 #33 KLHL14 (ENSSLUG00000001102) #34 CACNA1E (ENSSLUG00000001187) #35 RNF11 (ENSSLUG00000001403) #36 Cottioidei ANCESTRAL SPECIES 22 ENSGT00940000159618 ENSGT00940000160510 ENSGT00950000183080.a.b.b.a.a #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00940000154756.B.v ##12 ENSGT00940000154756.A #12 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 ENSGT00950000182913.B.e #37 ENSGT00730000110872.b.db Lumpfish MODERN SPECIES 8 guk1a (ENSCLMG00005022859) #9 ENSCLMG00005022858 ##12 ENSCLMG00005022857 #10 ENSCLMG00005022856 ##12 ENSCLMG00005022855 #12 ENSCLMG00005022854 #12 ENSCLMG00005022853 #12 atg9b (ENSCLMG00005022852) #13 abcb8 (ENSCLMG00005022843) #14 ENSCLMG00005022839 ENSCLMG00005022837 #17 zgc:92591 (ENSCLMG00005022836) #18 asb10 (ENSCLMG00005022834) #19 gbx1 (ENSCLMG00005022833) #20 AGAP3 (ENSCLMG00005022823) #21 RB1CC1 (ENSCLMG00005022814) #22 ST18 (ENSCLMG00005022813) #23 pcmtd1 (ENSCLMG00005022812) #24 SNTG1 (ENSCLMG00005022811) #25 SNAI2 (ENSCLMG00005022810) ube2v2 (ENSCLMG00005022809) #27 mcm4 (ENSCLMG00005022768) #28 cebpd (ENSCLMG00005022761) #29 SPIDR (ENSCLMG00005022760) #30 mapre2 (ENSCLMG00005022758) #31 dtna (ENSCLMG00005022743) #32 KLHL14 (ENSCLMG00005022742) #34 ENSCLMG00005022741 CACNA1E (ENSCLMG00005022738) #35 RNF11 (ENSCLMG00005022737) #36 rpe65a (ENSCLMG00005022736) #37 Stickleback MODERN SPECIES 2 ranbp9 (ENSGACG00000017991) ENSGACG00000017989 epdr1 (ENSGACG00000017987) stard3nl (ENSGACG00000017984) atg9b (ENSGACG00000017983) #13 abcb8 (ENSGACG00000017977) #14 cdk5 (ENSGACG00000017975) #15 asic1c (ENSGACG00000017974) #16 ENSGACG00000017967 ENSGACG00000017965 zgc:92591 (ENSGACG00000017964) #18 asb10 (ENSGACG00000017961) #19 gbx1 (ENSGACG00000017959) #20 AGAP3 (ENSGACG00000017957) #21 AGAP3 (ENSGACG00000017955) #21 RB1CC1 (ENSGACG00000017953) #22 ENSGACG00000017947 #23 pcmtd1 (ENSGACG00000017945) #24 SNTG1 (ENSGACG00000017936) #25 snai2 (ENSGACG00000017935) #26 ube2v2 (ENSGACG00000017931) #27 mcm4 (ENSGACG00000017929) #28 cebpd (ENSGACG00000017927) #29 SPIDR (ENSGACG00000017926) #30 ENSGACG00000017923 mapre2 (ENSGACG00000017916) #31 dtna (ENSGACG00000017909) #32 KLHL14 (ENSGACG00000017904) #34 CACNA1E (ENSGACG00000017893) #35 RNF11 (ENSGACG00000017888) #36 rpe65a (ENSGACG00000017857) #37 Tetraodontidae ANCESTRAL SPECIES 30 ENSGT00940000159380 ENSGT00950000182843.b ENSGT00940000159618 ENSGT00940000160510 ENSGT00950000183080.a.b.b.a.a #7 ENSGT00390000005590 #8 ENSGT00940000155815.q #9 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a.e #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000159556 #34 ENSGT00940000155601.h #35 ENSGT00730000110988.wb.b #36 ENSGT00950000182913.B.e #37 Tetraodon MODERN SPECIES 7 wnt9a (ENSTNIG00000008486) wnt3a (ENSTNIG00000008487) zgc:63882 (ENSTNIG00000008488) #8 guk1a (ENSTNIG00000008489) #9 guk1a (ENSTNIG00000008491) #9 ENSTNIG00000008490 #12 atg9b (ENSTNIG00000008492) #13 abcb8 (ENSTNIG00000008493) #14 ENSTNIG00000008494 ENSTNIG00000001162 asic1c (ENSTNIG00000008495) #16 zgc:92591 (ENSTNIG00000008496) #18 asb10 (ENSTNIG00000008497) #19 gbx1 (ENSTNIG00000008498) #20 AGAP3 (ENSTNIG00000008499) #21 RB1CC1 (ENSTNIG00000008500) #22 ST18 (ENSTNIG00000008501) #23 pcmtd1 (ENSTNIG00000008502) #24 SNTG1 (ENSTNIG00000008503) #25 snai2 (ENSTNIG00000008504) #26 ube2v2 (ENSTNIG00000008505) #27 mcm4 (ENSTNIG00000008506) #28 cebpd (ENSTNIG00000000222) #29 SPIDR (ENSTNIG00000008507) #30 mapre2 (ENSTNIG00000008508) #31 dtna (ENSTNIG00000008509) #32 KLHL14 (ENSTNIG00000008510) #34 ENSTNIG00000008511 #35 RNF11 (ENSTNIG00000008512) #36 rpe65a (ENSTNIG00000008513) #37 ENSTNIG00000008514 Fugu MODERN SPECIES 14 jmjd4 (ENSTRUG00000022722) snap47 (ENSTRUG00000014070) wnt9a (ENSTRUG00000014101) wnt3a (ENSTRUG00000014272) arf2b (ENSTRUG00000014380) #7 zgc:63882 (ENSTRUG00000014402) #8 guk1 (ENSTRUG00000014441) #9 atg9b (ENSTRUG00000002303) #13 abcb8 (ENSTRUG00000003209) #14 cdk5 (ENSTRUG00000004034) #15 asic1c (ENSTRUG00000004514) #16 zgc:92591 (ENSTRUG00000020180) #18 asb10 (ENSTRUG00000005244) #19 gbx1 (ENSTRUG00000005470) #20 AGAP3 (ENSTRUG00000005543) #21 RB1CC1 (ENSTRUG00000005744) #22 ST18 (ENSTRUG00000006078) #23 pcmtd1 (ENSTRUG00000023062) #24 SNTG1 (ENSTRUG00000006540) #25 snai2 (ENSTRUG00000025588) #26 ube2v2 (ENSTRUG00000006972) #27 mcm4 (ENSTRUG00000006983) #28 cebpd (ENSTRUG00000007551) #29 SPIDR (ENSTRUG00000007627) #30 mapre2 (ENSTRUG00000026616) #31 dtna (ENSTRUG00000007855) #32 ENSTRUG00000023325 #33 KLHL14 (ENSTRUG00000008361) #34 CACNA1E (ENSTRUG00000008613) #35 RNF11 (ENSTRUG00000023432) #36 rpe65a (ENSTRUG00000009002) #37 Tiger tail seahorse MODERN SPECIES 277 zgc:63882 (ENSHCOG00000020206) #8 guk1a (ENSHCOG00000020183) #9 ENSHCOG00000020164 #12 ENSHCOG00000020136 #12 ENSHCOG00000020124 ENSHCOG00000020118 ENSHCOG00000020104 ENSHCOG00000020092 #11 ENSHCOG00000020079 #12 atg9b (ENSHCOG00000020041) #13 asic1c (ENSHCOG00000020010) #16 zgc:92591 (ENSHCOG00000019677) #18 asb10 (ENSHCOG00000019668) #19 gbx1 (ENSHCOG00000019655) #20 AGAP3 (ENSHCOG00000019645) #21 RB1CC1 (ENSHCOG00000019600) #22 ENSHCOG00000019513 #23 pcmtd1 (ENSHCOG00000019502) #24 SNTG1 (ENSHCOG00000019480) #25 snai2 (ENSHCOG00000019435) #26 ube2v2 (ENSHCOG00000019424) #27 mcm4 (ENSHCOG00000019404) #28 cebpd (ENSHCOG00000019368) #29 ENSHCOG00000019326 mapre2 (ENSHCOG00000019318) #31 dtna (ENSHCOG00000019283) #32 KLHL14 (ENSHCOG00000019238) #34 CACNA1E (ENSHCOG00000019197) #35 RNF11 (ENSHCOG00000019087) #36 rpe65a (ENSHCOG00000019070) #37 ENSHCOG00000019035 Pinecone sodierfish MODERN SPECIES 8 ENSMMDG00005018935 ENSMMDG00005018933 ENSMMDG00005018931 ENSMMDG00005018930 ENSMMDG00005018928 ENSMMDG00005018927 atg9b (ENSMMDG00005018926) #13 abcb8 (ENSMMDG00005018903) #14 cdk5 (ENSMMDG00005018899) #15 ENSMMDG00005018896 #16 ENSMMDG00005018893 #16 zgc:92591 (ENSMMDG00005018891) #18 asb10 (ENSMMDG00005018888) #19 gbx1 (ENSMMDG00005018886) #20 AGAP3 (ENSMMDG00005017115) #21 RB1CC1 (ENSMMDG00005017063) #22 ENSMMDG00005017059 #23 pcmtd1 (ENSMMDG00005017058) #24 ENSMMDG00005017056 #22 ENSMMDG00005017054 ENSMMDG00005017051 #23 pcmtd1 (ENSMMDG00005017050) #24 SNTG1 (ENSMMDG00005017044) #25 snai2 (ENSMMDG00005017041) #26 ube2v2 (ENSMMDG00005017027) #27 mcm4 (ENSMMDG00005016605) #28 cebpd (ENSMMDG00005016583) #29 SPIDR (ENSMMDG00005016579) #30 mapre2 (ENSMMDG00005016575) #31 ENSMMDG00005016573 #32 ENSMMDG00005016572 Cod MODERN SPECIES 21 ENSGMOG00000008528 wnt3a (ENSGMOG00000023810) arf1 (ENSGMOG00000000429) zgc:63882 (ENSGMOG00000031619) #8 guk1a (ENSGMOG00000010668) #9 ENSGMOG00000003217 ENSGMOG00000003192 #13 ENSGMOG00000003158 #14 asic1c (ENSGMOG00000003105) #16 zgc:92591 (ENSGMOG00000036273) #18 ENSGMOG00000002991 ENSGMOG00000024350 asb10 (ENSGMOG00000002971) #19 gbx1 (ENSGMOG00000031776) #20 AGAP3 (ENSGMOG00000002916) #21 RB1CC1 (ENSGMOG00000002866) #22 ENSGMOG00000028587 #23 pcmtd1 (ENSGMOG00000028842) #24 SNTG1 (ENSGMOG00000002680) #25 ube2v2 (ENSGMOG00000002655) #27 mcm4 (ENSGMOG00000002603) #28 cebpd (ENSGMOG00000002585) #29 SPIDR (ENSGMOG00000033595) #30 mapre2 (ENSGMOG00000002503) #31 dtna (ENSGMOG00000002455) #32 ENSGMOG00000025874 #33 KLHL14 (ENSGMOG00000002423) #34 ENSGMOG00000002325 #35 ENSGMOG00000024662 #36 ENSGMOG00000002287 #37 ENSGMOG00000002255 Salmoninae DUPLICATION Salmoninae_a ANCESTRAL SPECIES 6 ENSGT00940000159618.e ENSGT00940000160510.e.b ENSGT00940000165468.h.b ENSGT00390000005590.d #8 ENSGT00940000155815.q.c #9 ENSGT00940000154756.A.cc #12 ENSGT00940000168428.b.b.a #11 ENSGT00940000154756.A.bc.a #12 ENSGT00970000196942.b ENSGT00390000014839.a.c #13 ENSGT00940000160805.s.a #15 ENSGT00940000164727.eb.b #16 ENSGT00940000158974 #19 ENSGT00940000154365.a.a.d #20 ENSGT00940000159586.db #21 ENSGT00390000015871.i #22 ENSGT00940000159905.w #23 ENSGT00950000183032.A.b.b.a.f #24 ENSGT00950000182863.B.a.b #25 ENSGT00940000154511.b.a ENSGT00740000115534.a.b.o.b #27 ENSGT01050000244824.A.s.a #28 ENSGT00940000163032.o #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b.k #31 ENSGT00940000153897.a.y #32 ENSGT00940000159556.a #34 ENSGT00940000155601.h.q #35 ENSGT00730000110988.wb.b.d #36 ENSGT00950000182913.B.e.c #37 ENSGT00730000110872.b.db.i Salmo ANCESTRAL SPECIES 5 ENSGT00940000159618.e ENSGT00940000160510.e.b ENSGT00940000165468.h.b ENSGT00390000005590.d #8 ENSGT00940000155815.q.c #9 ENSGT00940000154756.A.cc #12 ENSGT00940000168428.b.b.a #11 ENSGT00940000154756.A.bc.a #12 ENSGT00970000196942.b ENSGT00390000014839.a.c #13 ENSGT00940000160805.s.a #15 ENSGT00940000164727.eb.b #16 ENSGT00940000158974 #19 ENSGT00940000154365.a.a.d #20 ENSGT00940000159586.db #21 ENSGT00390000015871.i #22 ENSGT00940000159905.w #23 ENSGT00950000183032.A.b.b.a.f #24 ENSGT00950000182863.B.a.b #25 ENSGT00940000154511.b.a ENSGT00740000115534.a.b.o.b #27 ENSGT01050000244824.A.s.a #28 ENSGT00940000163032.o #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b.k #31 ENSGT00940000153897.a.y #32 ENSGT00940000159556.a #34 ENSGT00940000155601.h.q #35 ENSGT00730000110988.wb.b.d #36 ENSGT00730000110872.b.db.i ENSGT00950000182928.B.d.a.f River trout MODERN SPECIES 24 wnt9a (ENSSTUG00000050016) wnt3a (ENSSTUG00000050020) arf1 (ENSSTUG00000050022) zgc:63882 (ENSSTUG00000050024) #8 guk1a (ENSSTUG00000050025) #9 ENSSTUG00000050032 #12 ENSSTUG00000050038 #11 ENSSTUG00000050046 #12 ENSSTUG00000050060 atg9b (ENSSTUG00000050065) #13 cdk5 (ENSSTUG00000050067) #15 asic1c (ENSSTUG00000050075) #16 asb10 (ENSSTUG00000050086) #19 gbx1 (ENSSTUG00000050089) #20 AGAP3 (ENSSTUG00000050108) #21 RB1CC1 (ENSSTUG00000050194) #22 ST18 (ENSSTUG00000050253) #23 pcmtd1 (ENSSTUG00000050292) #24 SNTG1 (ENSSTUG00000050297) #25 SNAI2 (ENSSTUG00000050330) ube2v2 (ENSSTUG00000050333) #27 mcm4 (ENSSTUG00000050439) #28 cebpd (ENSSTUG00000050446) #29 SPIDR (ENSSTUG00000050448) #30 mapre2 (ENSSTUG00000050454) #31 dtna (ENSSTUG00000050468) #32 KLHL14 (ENSSTUG00000050593) #34 ENSSTUG00000050597 CACNA1E (ENSSTUG00000050622) #35 RNF11 (ENSSTUG00000050754) #36 ENSSTUG00000003683 Atlantic salmon MODERN SPECIES 22 ENSSSAG00000075076 jmjd4 (ENSSSAG00000104962) snap47 (ENSSSAG00000075073) wnt9a (ENSSSAG00000096426) ENSSSAG00000075007 arf1 (ENSSSAG00000074998) zgc:63882 (ENSSSAG00000102224) #8 kgua (ENSSSAG00000087401) #9 CATH-1A (ENSSSAG00000074950) ENSSSAG00000074940 #13 ENSSSAG00000118300 #15 asic1c (ENSSSAG00000048005) #16 asb10 (ENSSSAG00000074859) #19 gbx1 (ENSSSAG00000074857) #20 AGAP3 (ENSSSAG00000073179) #21 RB1CC1 (ENSSSAG00000071295) #22 ST18 (ENSSSAG00000071181) #23 pcmtd1 (ENSSSAG00000071153) #24 SNTG1 (ENSSSAG00000038787) #25 snai2 (ENSSSAG00000071101) ube2v2 (ENSSSAG00000071078) #27 mcm4 (ENSSSAG00000070777) #28 SPIDR (ENSSSAG00000070763) #30 mapre2 (ENSSSAG00000070759) #31 dtna (ENSSSAG00000070459) #32 KLHL14 (ENSSSAG00000070437) #34 ENSSSAG00000045433 #35 ENSSSAG00000044947 #36 ENSSSAG00000044902 A13CA (ENSSSAG00000044647) ENSSSAG00000117812 Oncorhynchus ANCESTRAL SPECIES 15 ENSGT00940000159380.d ENSGT00950000182843.b.j ENSGT00940000159618.e ENSGT00940000160510.e.b ENSGT00940000165468.h.b ENSGT00390000005590.d #8 ENSGT00940000155815.q.c #9 ENSGT00940000154756.A.cc #12 ENSGT00970000196942.b ENSGT00390000014839.a.c #13 ENSGT00940000160805.s.a #15 ENSGT00940000164727.eb.b #16 ENSGT00940000158974 #19 ENSGT00940000154365.a.a.d #20 ENSGT00940000159586.db #21 ENSGT00390000015871.i #22 ENSGT00940000159905.w #23 ENSGT00950000183032.A.b.b.a.f #24 ENSGT00950000182863.B.a.b #25 ENSGT00940000154511.b.a ENSGT00740000115534.a.b.o.b #27 ENSGT01050000244824.A.s.a #28 ENSGT00940000163032.o #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b.k #31 ENSGT00940000153897.a.y #32 ENSGT00940000159556.a #34 ENSGT00940000155601.h.q #35 ENSGT00730000110988.wb.b.d #36 ENSGT00950000182913.B.e.c #37 ENSGT00730000110872.b.db.i Oncorhynchus_a ANCESTRAL SPECIES 22 ENSGT00940000159380.d ENSGT00950000182843.b.j ENSGT00940000159618.e ENSGT00940000160510.e.b ENSGT00940000165468.h.b ENSGT00390000005590.d #8 ENSGT00940000155815.q.c #9 ENSGT00940000154756.A.cc #12 ENSGT00970000196942.b ENSGT00390000014839.a.c #13 ENSGT00940000160805.s.a #15 ENSGT00940000164727.eb.b #16 ENSGT00940000158974 #19 ENSGT00940000154365.a.a.d #20 ENSGT00940000159586.db #21 ENSGT00390000015871.i #22 ENSGT00940000159905.w #23 ENSGT00950000183032.A.b.b.a.f #24 ENSGT00950000182863.B.a.b #25 ENSGT00940000154511.b.a ENSGT00740000115534.a.b.o.b #27 ENSGT01050000244824.A.s.a #28 ENSGT00940000163032.o #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b.k #31 ENSGT00940000153897.a.y #32 ENSGT00940000159556.a #34 ENSGT00940000155601.h.q #35 ENSGT00730000110988.wb.b.d #36 ENSGT00950000182913.B.e.c #37 ENSGT00730000110872.b.db.i Chinook salmon MODERN SPECIES 20 wnt9a (ENSOTSG00005045024) wnt3a (ENSOTSG00005045026) arf1 (ENSOTSG00005045028) zgc:63882 (ENSOTSG00005025248) #8 guk1a (ENSOTSG00005025253) #9 ENSOTSG00005025260 #12 ENSOTSG00005025264 #12 ENSOTSG00005025265 atg9b (ENSOTSG00005025274) #13 ENSOTSG00005025276 asic1c (ENSOTSG00005025284) #16 ENSOTSG00005025419 asb10 (ENSOTSG00005025421) #19 gbx1 (ENSOTSG00005025423) #20 AGAP3 (ENSOTSG00005025446) #21 RB1CC1 (ENSOTSG00005029998) #22 ST18 (ENSOTSG00005030071) #23 pcmtd1 (ENSOTSG00005030078) #24 SNTG1 (ENSOTSG00005030084) #25 SNAI2 (ENSOTSG00005030091) ube2v2 (ENSOTSG00005030094) #27 mcm4 (ENSOTSG00005030148) #28 ENSOTSG00005035302 #30 mapre2 (ENSOTSG00005035304) #31 dtna (ENSOTSG00005035319) #32 KLHL14 (ENSOTSG00005036150) #34 CACNA1E (ENSOTSG00005036191) #35 RNF11 (ENSOTSG00005036218) #36 rpe65a (ENSOTSG00005036221) #37 ENSOTSG00005036243 ENSOTSG00005036256 Coho salmon MODERN SPECIES 19 jmjd4 (ENSOKIG00005036439) snap47 (ENSOKIG00005036449) wnt9a (ENSOKIG00005036461) ENSOKIG00005036510 arf1 (ENSOKIG00005036591) zgc:63882 (ENSOKIG00005036633) #8 guk1a (ENSOKIG00005036691) #9 ENSOKIG00005037021 ATG9B (ENSOKIG00005037064) #13 CDK5 (ENSOKIG00005010623) #15 asic1c (ENSOKIG00005010680) #16 ENSOKIG00005010796 asb10 (ENSOKIG00005010800) #19 gbx1 (ENSOKIG00005010810) #20 AGAP3 (ENSOKIG00005010889) #21 RB1CC1 (ENSOKIG00005012074) #22 ST18 (ENSOKIG00005012162) #23 pcmtd1 (ENSOKIG00005012295) #24 SNTG1 (ENSOKIG00005012321) #25 SNAI2 (ENSOKIG00005012435) ENSOKIG00005012448 ube2v2 (ENSOKIG00005015575) #27 mcm4 (ENSOKIG00005012623) #28 ENSOKIG00005015667 cebpd (ENSOKIG00005015672) #29 ENSOKIG00005015683 #30 mapre2 (ENSOKIG00005015714) #31 dtna (ENSOKIG00005015824) #32 ENSOKIG00005016427 KLHL14 (ENSOKIG00005016434) #34 ENSOKIG00005016440 Rainbow trout MODERN SPECIES 20 ENSOMYG00000063977 ENSOMYG00000040813 arf1 (ENSOMYG00000069131) ENSOMYG00000040839 #9 zgc:63882 (ENSOMYG00000040846) #8 ENSOMYG00000071217 CATH-1a (ENSOMYG00000040935) ENSOMYG00000049647 ENSOMYG00000040941 #13 ENSOMYG00000040956 asic1c (ENSOMYG00000041000) #16 ENSOMYG00000072832 asb10 (ENSOMYG00000041083) #19 gbx1 (ENSOMYG00000041088) #20 AGAP3 (ENSOMYG00000041178) #21 RB1CC1 (ENSOMYG00000041485) #22 ST18 (ENSOMYG00000041553) #23 pcmtd1 (ENSOMYG00000041965) #24 SNTG1 (ENSOMYG00000041982) #25 SNAI2 (ENSOMYG00000042032) ub2v2 (ENSOMYG00000042043) #27 mcm4 (ENSOMYG00000042181) #28 cebpd (ENSOMYG00000042667) #29 SPIDR (ENSOMYG00000042670) #30 mapre2 (ENSOMYG00000042688) #31 dtna (ENSOMYG00000042732) #32 ENSOMYG00000056985 KLHL14 (ENSOMYG00000042966) #34 ENSOMYG00000043119 #35 ENSOMYG00000069696 #36 ENSOMYG00000021464 Huchen MODERN SPECIES 112 ENSHHUG00000028323 arf1 (ENSHHUG00000028289) zgc:63882 (ENSHHUG00000028275) #8 guk1a (ENSHHUG00000028260) #9 ENSHHUG00000028179 ##12 ENSHHUG00000028173 ENSHHUG00000028166 ##12 ENSHHUG00000028118 #12 ENSHHUG00000028103 atg9b (ENSHHUG00000028090) #13 cdk5 (ENSHHUG00000027887) #15 ENSHHUG00000027853 asb10 (ENSHHUG00000027843) #19 gbx1 (ENSHHUG00000027841) #20 AGAP3 (ENSHHUG00000027750) #21 RB1CC1 (ENSHHUG00000027722) #22 ST18 (ENSHHUG00000027717) #23 pcmtd1 (ENSHHUG00000027709) #24 SNTG1 (ENSHHUG00000027681) #25 Salmoninae ANCESTRAL SPECIES 1052 ENSGT00390000015871.j #22 ENSGT00940000159905.x #23 ENSGT00950000183032.A.b.b.a.e #24 ENSGT00950000182863.B.a.a #25 ENSGT00940000154511.b.b Salmoninae_a ANCESTRAL SPECIES 2 ENSGT00940000159618.f ENSGT00940000160510.e.a ENSGT00940000165468.h.a ENSGT00390000005590.c #8 ENSGT00940000155815.q.d #9 ENSGT00940000154756.A.bc.b #12 ENSGT00970000196942.a.a ENSGT00970000196942.a.b ENSGT00390000014839.a.d #13 ENSGT00940000159126 #14 ENSGT00940000160805.s.b #15 ENSGT00940000164727.eb.a #16 ENSGT01100000263569.a.a #18 ENSGT00940000154365.a.a.c #20 ENSGT00940000159586.eb #21 ENSGT00390000015871.j #22 ENSGT00940000159905.x #23 ENSGT00950000183032.A.b.b.a.e #24 ENSGT00950000182863.B.a.a #25 ENSGT00940000154511.b.b ENSGT00740000115534.a.b.o.a #27 ENSGT01050000244824.A.s.b #28 ENSGT00940000163032.p #29 ENSGT00490000043329.a.a.b.l #31 ENSGT00940000153897.a.z #32 ENSGT00940000166855 #33 ENSGT00940000159556.b #34 ENSGT00940000155601.h.r #35 ENSGT00730000110988.wb.b.c #36 ENSGT00950000182913.B.e.d #37 ENSGT00730000110872.b.db.j Oncorhynchus ANCESTRAL SPECIES 11 ENSGT00940000159618.f ENSGT00940000160510.e.a ENSGT00940000165468.h.a ENSGT00390000005590.c #8 ENSGT00940000155815.q.d #9 ENSGT00940000154756.A.bc.b #12 ENSGT00970000196942.a.a ENSGT00970000196942.a.b ENSGT00390000014839.a.d #13 ENSGT00940000159126 #14 ENSGT00940000160805.s.b #15 ENSGT00940000164727.eb.a #16 ENSGT01100000263569.a.a #18 ENSGT00940000154365.a.a.c #20 ENSGT00940000159586.eb #21 ENSGT00390000015871.j #22 ENSGT00940000159905.x #23 ENSGT00950000183032.A.b.b.a.e #24 ENSGT00950000182863.B.a.a #25 ENSGT00940000154511.b.b ENSGT00740000115534.a.b.o.a #27 ENSGT01050000244824.A.s.b #28 ENSGT00940000163032.p #29 ENSGT00490000043329.a.a.b.l #31 ENSGT00940000153897.a.z #32 ENSGT00940000166855 #33 ENSGT00940000159556.b #34 ENSGT00940000155601.h.r #35 ENSGT00730000110988.wb.b.c #36 ENSGT00950000182913.B.e.d #37 ENSGT00730000110872.b.db.j Oncorhynchus_a ANCESTRAL SPECIES 24 ENSGT00940000159618.f ENSGT00940000160510.e.a ENSGT00940000165468.h.a ENSGT00390000005590.c #8 ENSGT00940000155815.q.d #9 ENSGT00940000154756.A.bc.b #12 ENSGT00970000196942.a.a ENSGT00970000196942.a.b ENSGT00390000014839.a.d #13 ENSGT00940000159126 #14 ENSGT00940000160805.s.b #15 ENSGT00940000164727.eb.a #16 ENSGT01100000263569.a.a #18 ENSGT00940000154365.a.a.c #20 ENSGT00940000159586.eb #21 ENSGT00390000015871.j #22 ENSGT00940000159905.x #23 ENSGT00950000183032.A.b.b.a.e #24 ENSGT00950000182863.B.a.a #25 ENSGT00940000154511.b.b ENSGT00740000115534.a.b.o.a #27 ENSGT01050000244824.A.s.b #28 ENSGT00940000163032.p #29 ENSGT00490000043329.a.a.b.l #31 ENSGT00940000153897.a.z #32 ENSGT00940000166855 #33 ENSGT00940000159556.b #34 ENSGT00940000155601.h.r #35 ENSGT00730000110988.wb.b.c #36 ENSGT00950000182913.B.e.d #37 ENSGT00730000110872.b.db.j Coho salmon MODERN SPECIES 23 arf1 (ENSOKIG00005046487) zgc:63882 (ENSOKIG00005046482) #8 guk1a (ENSOKIG00005046473) #9 ENSOKIG00005046469 #12 ENSOKIG00005046427 #12 ENSOKIG00005046413 ENSOKIG00005046410 ENSOKIG00005046399 atg9b (ENSOKIG00005046390) #13 abcb8 (ENSOKIG00005045671) #14 cdk5 (ENSOKIG00005045617) #15 asic1c (ENSOKIG00005045576) #16 zgc:92591 (ENSOKIG00005045562) #18 gbx1 (ENSOKIG00005045547) #20 AGAP3 (ENSOKIG00005044247) #21 RB1CC1 (ENSOKIG00005043923) #22 ST18 (ENSOKIG00005043866) #23 pcmtd1 (ENSOKIG00005043814) #24 SNTG1 (ENSOKIG00005043681) #25 SNAI2 (ENSOKIG00005043628) ube2v2 (ENSOKIG00005043488) #27 mcm4 (ENSOKIG00005042602) #28 cebpd (ENSOKIG00005042535) #29 mapre2 (ENSOKIG00005042521) #31 dtna (ENSOKIG00005042216) #32 ENSOKIG00005042070 #33 KLHL14 (ENSOKIG00005042027) #34 CACNA1E (ENSOKIG00005040342) #35 RNF11 (ENSOKIG00005040187) #36 rpe65a (ENSOKIG00005038933) #37 ENSOKIG00005038828 Chinook salmon MODERN SPECIES 1 ENSOTSG00005024018 atg9b (ENSOTSG00005024017) #13 abcb8 (ENSOTSG00005022712) #14 cdk5 (ENSOTSG00005022708) #15 asic1c (ENSOTSG00005022638) #16 zgc:92591 (ENSOTSG00005022636) #18 gbx1 (ENSOTSG00005022634) #20 AGAP3 (ENSOTSG00005021973) #21 ENSOTSG00005021966 ENSOTSG00005021965 ENSOTSG00005021964 DHX30 (ENSOTSG00005021618) wrnip1 (ENSOTSG00005021615) MYLK4 (ENSOTSG00005021614) dusp16 (ENSOTSG00005021613) RB1CC1 (ENSOTSG00005020635) #22 ST18 (ENSOTSG00005020629) #23 pcmtd1 (ENSOTSG00005020619) #24 SNTG1 (ENSOTSG00005020496) #25 SNAI2 (ENSOTSG00005020495) ube2v2 (ENSOTSG00005020262) #27 mcm4 (ENSOTSG00005018578) #28 cebpd (ENSOTSG00005018554) #29 mapre2 (ENSOTSG00005018552) #31 dtna (ENSOTSG00005018079) #32 ENSOTSG00005018063 #33 ENSOTSG00005018060 GPAA1 (ENSOTSG00005018054) exosc4 (ENSOTSG00005018049) prkacbb (ENSOTSG00005017730) ENSOTSG00005017723 Rainbow trout MODERN SPECIES 29 zgc:63882 (ENSOMYG00000028745) #8 guk1a (ENSOMYG00000028695) #9 ENSOMYG00000028625 #12 ENSOMYG00000028470 #12 ENSOMYG00000028365 ENSOMYG00000054775 ENSOMYG00000028303 atg9b (ENSOMYG00000028292) #13 ENSOMYG00000027030 #14 cdk5 (ENSOMYG00000026617) #15 asic1c (ENSOMYG00000026444) #16 zgc:92591 (ENSOMYG00000067767) #18 gbx1 (ENSOMYG00000026337) #20 ENSOMYG00000053122 AGAP3 (ENSOMYG00000025622) #21 RB1CC1 (ENSOMYG00000025339) #22 ST18 (ENSOMYG00000025223) #23 pcmtd1 (ENSOMYG00000025156) #24 SNTG1 (ENSOMYG00000024969) #25 SNAI2 (ENSOMYG00000024876) ube2v2 (ENSOMYG00000024616) #27 mcm4 (ENSOMYG00000023779) #28 cebpd (ENSOMYG00000023544) #29 ENSOMYG00000075412 mapre2 (ENSOMYG00000023514) #31 dtna (ENSOMYG00000022825) #32 ENSOMYG00000077404 ENSOMYG00000022619 #33 KLHL14 (ENSOMYG00000022576) #34 ENSOMYG00000021097 #35 ENSOMYG00000063147 Salmo ANCESTRAL SPECIES 21 ENSGT00940000159618.f ENSGT00940000160510.e.a ENSGT00940000165468.h.a ENSGT00390000005590.c #8 ENSGT00940000155815.q.d #9 ENSGT00940000154756.A.bc.b #12 ENSGT00970000196942.a.a ENSGT00970000196942.a.b ENSGT00390000014839.a.d #13 ENSGT00940000159126 #14 ENSGT00940000160805.s.b #15 ENSGT00940000164727.eb.a #16 ENSGT01100000263569.a.a #18 ENSGT00940000154365.a.a.c #20 ENSGT00940000159586.eb #21 ENSGT00390000015871.j #22 ENSGT00940000159905.x #23 ENSGT00950000183032.A.b.b.a.e #24 ENSGT00950000182863.B.a.a #25 ENSGT00940000154511.b.b ENSGT00740000115534.a.b.o.a #27 ENSGT01050000244824.A.s.b #28 ENSGT00940000163032.p #29 ENSGT00490000043329.a.a.b.l #31 ENSGT00940000153897.a.z #32 ENSGT00940000166855 #33 ENSGT00940000159556.b #34 ENSGT00940000155601.h.r #35 ENSGT00730000110988.wb.b.c #36 ENSGT00950000182913.B.e.d #37 ENSGT00730000110872.b.db.j River trout MODERN SPECIES 13 arf1 (ENSSTUG00000011952) zgc:63882 (ENSSTUG00000011946) #8 guk1a (ENSSTUG00000011933) #9 ENSSTUG00000011909 #12 ENSSTUG00000011889 #12 ENSSTUG00000011809 #12 ENSSTUG00000011778 ENSSTUG00000011746 atg9b (ENSSTUG00000011733) #13 abcb8 (ENSSTUG00000011038) #14 cdk5 (ENSSTUG00000011004) #15 asic1c (ENSSTUG00000010965) #16 zgc:92591 (ENSSTUG00000010956) #18 gbx1 (ENSSTUG00000010950) #20 AGAP3 (ENSSTUG00000008467) #21 RB1CC1 (ENSSTUG00000008258) #22 ST18 (ENSSTUG00000008180) #23 pcmtd1 (ENSSTUG00000008156) #24 SNTG1 (ENSSTUG00000007973) #25 SNAI2 (ENSSTUG00000007961) ube2v2 (ENSSTUG00000007810) #27 mcm4 (ENSSTUG00000007059) #28 cebpd (ENSSTUG00000007027) #29 ENSSTUG00000007020 mapre2 (ENSSTUG00000007016) #31 dtna (ENSSTUG00000006673) #32 ENSSTUG00000006617 #33 KLHL14 (ENSSTUG00000006601) #34 CACNA1E (ENSSTUG00000003566) #35 RNF11 (ENSSTUG00000003423) #36 rpe65a (ENSSTUG00000002403) #37 Atlantic salmon MODERN SPECIES 5 cssa14h1orf35 (ENSSSAG00000049571) #8 guk1 (ENSSSAG00000111657) #9 ENSSSAG00000049398 #12 ENSSSAG00000049346 #12 ENSSSAG00000049319 ENSSSAG00000049270 atg9b (ENSSSAG00000049245) #13 ENSSSAG00000048268 #14 cdk5 (ENSSSAG00000111176) #15 asic1c (ENSSSAG00000074872) #16 zgc:92591 (ENSSSAG00000110359) #18 gbx1 (ENSSSAG00000047975) #20 ENSSSAG00000111763 AGAP3 (ENSSSAG00000045432) #21 ENSSSAG00000092930 RB1CC1 (ENSSSAG00000040196) #22 ENSSSAG00000094155 ST18 (ENSSSAG00000039855) #23 pcmtd1 (ENSSSAG00000039804) #24 SNTG1 (ENSSSAG00000071111) #25 SNAI2 (ENSSSAG00000090597) ube2v2 (ENSSSAG00000081709) #27 mcm4 (ENSSSAG00000081704) #28 mapre2 (ENSSSAG00000081701) #31 dtna (ENSSSAG00000081677) #32 ENSSSAG00000081655 #33 KLHL14 (ENSSSAG00000081653) #34 ENSSSAG00000081512 #35 ENSSSAG00000081464 #36 ENSSSAG00000081448 #37 ENSSSAG00000081434 Huchen MODERN SPECIES 1430 ENSHHUG00000027204 RB1CC1 (ENSHHUG00000027206) #22 ST18 (ENSHHUG00000027228) #23 pcmtd1 (ENSHHUG00000027263) #24 SNTG1 (ENSHHUG00000027267) #25 SNAI2 (ENSHHUG00000027281) Northern pike MODERN SPECIES 2 jmjd4 (ENSELUG00000022668) snap47 (ENSELUG00000022622) wnt9a (ENSELUG00000022603) wnt3a (ENSELUG00000022562) arf1 (ENSELUG00000022533) zgc:63882 (ENSELUG00000022509) #8 guk1a (ENSELUG00000022500) #9 atg9b (ENSELUG00000022336) #13 abcb8 (ENSELUG00000022262) #14 cdk5 (ENSELUG00000022250) #15 asic1c (ENSELUG00000022201) #16 zgc:92591 (ENSELUG00000022181) #18 asb10 (ENSELUG00000022169) #19 gbx1 (ENSELUG00000022141) #20 AGAP3 (ENSELUG00000022117) #21 RB1CC1 (ENSELUG00000022064) #22 ST18 (ENSELUG00000021998) #23 pcmtd1 (ENSELUG00000021947) #24 SNTG1 (ENSELUG00000021900) #25 SNAI2 (ENSELUG00000021795) ube2v2 (ENSELUG00000029938) #27 mcm4 (ENSELUG00000021720) #28 cebpd (ENSELUG00000021661) #29 SPIDR (ENSELUG00000021622) #30 mapre2 (ENSELUG00000021574) #31 dtna (ENSELUG00000021517) #32 ENSELUG00000029900 #33 KLHL14 (ENSELUG00000021436) #34 CACNA1E (ENSELUG00000021389) #35 RNF11 (ENSELUG00000021315) #36 rpe65a (ENSELUG00000021297) #37 Otomorpha ANCESTRAL SPECIES 302 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727.b #16 ENSGT00940000164727.a.a #16 ENSGT00940000165535 #17 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000171212 ENSGT00940000159556 #34 Clupeiformes ANCESTRAL SPECIES 168 ENSGT00390000008565.b ENSGT00940000160043 ENSGT00940000157207.b ENSGT00940000156826 ENSGT00940000177713 ENSGT00390000003420.a.b ENSGT00530000063273.a ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727.b #16 ENSGT00940000164727.a.a #16 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a #26 ENSGT00740000115534.a.b #27 ENSGT00940000154511.b ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000159556 #34 ENSGT00390000001263 ENSGT00950000182955.a.a.b ENSGT00940000155601.h #35 Denticle herring DUPLICATION Denticle herring MODERN SPECIES 14 usp33 (ENSDCDG00000017122) miga1 (ENSDCDG00000017115) ENSDCDG00000017076 dnajb4 (ENSDCDG00000017062) ENSDCDG00000017059 gipc2 (ENSDCDG00000017057) txndc12 (ENSDCDG00000017055) cdk5 (ENSDCDG00000016883) #15 ENSDCDG00000016874 #16 ENSDCDG00000016856 #16 zgc:92591 (ENSDCDG00000016827) #18 asb10 (ENSDCDG00000016821) #19 gbx1 (ENSDCDG00000016815) #20 AGAP3 (ENSDCDG00000016772) #21 ENSDCDG00000016754 RB1CC1 (ENSDCDG00000016749) #22 AGAP3 (ENSDCDG00000016380) #21 ENSDCDG00000016358 RB1CC1 (ENSDCDG00000014866) #22 ST18 (ENSDCDG00000014815) #23 pcmtd1 (ENSDCDG00000014803) #24 SNTG1 (ENSDCDG00000014769) #25 SNAI2 (ENSDCDG00000014746) ube2v2 (ENSDCDG00000014528) #27 ENSDCDG00000014512 ranbp9 (ENSDCDG00000014051) rnf182 (ENSDCDG00000014010) ENSDCDG00000013996 and2 (ENSDCDG00000013972) ENSDCDG00000013952 ENSDCDG00000013946 Denticle herring MODERN SPECIES 14 dnajb4 (ENSDCDG00000017062) ENSDCDG00000017059 gipc2 (ENSDCDG00000017057) txndc12 (ENSDCDG00000017055) cdk5 (ENSDCDG00000016883) #15 ENSDCDG00000016874 #16 ENSDCDG00000016856 #16 zgc:92591 (ENSDCDG00000016827) #18 asb10 (ENSDCDG00000016821) #19 gbx1 (ENSDCDG00000016815) #20 AGAP3 (ENSDCDG00000016772) #21 ENSDCDG00000016754 RB1CC1 (ENSDCDG00000016749) #22 AGAP3 (ENSDCDG00000016380) #21 ENSDCDG00000016358 RB1CC1 (ENSDCDG00000014866) #22 ST18 (ENSDCDG00000014815) #23 pcmtd1 (ENSDCDG00000014803) #24 SNTG1 (ENSDCDG00000014769) #25 SNAI2 (ENSDCDG00000014746) ube2v2 (ENSDCDG00000014528) #27 ENSDCDG00000014512 ranbp9 (ENSDCDG00000014051) rnf182 (ENSDCDG00000014010) ENSDCDG00000013996 and2 (ENSDCDG00000013972) ENSDCDG00000013952 ENSDCDG00000013946 ENSDCDG00000013921 e2f5 (ENSDCDG00000013871) ENSDCDG00000022231 Atlantic herring MODERN SPECIES 17 ENSCHAG00000008451 ENSCHAG00000008458 ENSCHAG00000008487 ENSCHAG00000008542 ENSCHAG00000008574 ENSCHAG00000008590 ENSCHAG00000008607 ENSCHAG00000008613 ENSCHAG00000008625 ENSCHAG00000008646 ENSCHAG00000008661 ENSCHAG00000008690 asb10 (ENSCHAG00000008702) #19 gbx1 (ENSCHAG00000008723) #20 AGAP3 (ENSCHAG00000008784) #21 RB1CC1 (ENSCHAG00000010136) #22 ENSCHAG00000010340 #23 pcmtd1 (ENSCHAG00000010358) #24 SNTG1 (ENSCHAG00000010397) #25 snai2 (ENSCHAG00000010581) #26 snai2 (ENSCHAG00000010631) #26 ube2v2 (ENSCHAG00000010655) #27 mcm4 (ENSCHAG00000010865) #28 cebpd (ENSCHAG00000011537) #29 SPIDR (ENSCHAG00000011551) #30 mapre2 (ENSCHAG00000011563) #31 dtna (ENSCHAG00000011606) #32 ENSCHAG00000011834 #33 KLHL14 (ENSCHAG00000011871) #34 pak1ip1 (ENSCHAG00000011894) abcd4 (ENSCHAG00000012156) Otophysi ANCESTRAL SPECIES 246 ENSGT00940000160805 #15 ENSGT00940000159126 #14 ENSGT00390000014839.a #13 ENSGT00940000164727.b #16 ENSGT00940000164727.a.a #16 ENSGT00940000165535 #17 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000171212 ENSGT00940000159556 #34 ENSGT00950000182955.a.a.b ENSGT00390000001263 Characiphysae ANCESTRAL SPECIES 146 ENSGT00940000160805 #15 ENSGT00940000159126 #14 ENSGT00390000014839.a #13 ENSGT00940000164727.b #16 ENSGT00940000164727.a.a #16 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a #26 ENSGT00740000115534.a.b #27 ENSGT00940000154511.b ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000171212 ENSGT00940000159556 #34 ENSGT00950000182955.a.a.b Characiphysae_b ANCESTRAL SPECIES 137 ENSGT00950000183080.a.b.b.a.a #7 ENSGT00940000156497.b ENSGT00470000042293.a.b.a.b ENSGT00950000183160.A ENSGT00940000163949.a ENSGT00550000075078 ENSGT00390000005900 ENSGT00940000160805 #15 ENSGT00940000159126 #14 ENSGT00390000014839.a #13 ENSGT00940000164727.b #16 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000171212 ENSGT00940000159556 #34 ENSGT00950000182955.a.a.b ENSGT00940000154756.B.o.a ##12 Characoidei ANCESTRAL SPECIES 60 ENSGT00940000156497.b ENSGT00470000042293.a.b.a.b ENSGT00950000183160.A ENSGT00940000163949.a ENSGT00550000075078 ENSGT00390000005900 ENSGT00530000063273.b.a.b.a.b.h ENSGT00940000160805 #15 ENSGT00940000159126 #14 ENSGT00390000014839.a #13 ENSGT00940000164727.b #16 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000171212 ENSGT00940000159556 #34 ENSGT00950000182955.a.a.b ENSGT00940000154756.B.o.a ##12 Red-bellied piranha MODERN SPECIES 512 ENSPNAG00000003420 #19 ENSPNAG00000016444 #19 gbx1 (ENSPNAG00000016435) #20 AGAP3 (ENSPNAG00000016410) #21 RB1CC1 (ENSPNAG00000016295) #22 ST18 (ENSPNAG00000016174) #23 pcmtd1 (ENSPNAG00000016148) #24 SNTG1 (ENSPNAG00000016103) #25 snai2 (ENSPNAG00000015896) #26 Mexicana tetra MODERN SPECIES 25 ENSAMXG00000043688 RB1CC1 (ENSAMXG00000004228) #22 ENSAMXG00000041785 #23 ENSAMXG00000035774 #23 pcmtd1 (ENSAMXG00000004269) #24 SNTG1 (ENSAMXG00000032073) #25 snai2 (ENSAMXG00000038235) #26 ube2v2 (ENSAMXG00000041649) #27 mcm4 (ENSAMXG00000004298) #28 cebpd (ENSAMXG00000037523) #29 SPIDR (ENSAMXG00000034318) #30 mapre2 (ENSAMXG00000033250) #31 dtna (ENSAMXG00000004333) #32 ENSAMXG00000044115 KLHL14 (ENSAMXG00000043692) #34 abcd4 (ENSAMXG00000004384) OBSCN (ENSAMXG00000004421) #12 Electric eel MODERN SPECIES 271 RB1CC1 (ENSEEEG00000010917) #22 ST18 (ENSEEEG00000010915) #23 pcmtd1 (ENSEEEG00000010913) #24 SNTG1 (ENSEEEG00000010912) #25 snai2 (ENSEEEG00000010911) #26 ube2v2 (ENSEEEG00000010905) #27 mcm4 (ENSEEEG00000010819) #28 cebpd (ENSEEEG00000010813) #29 ENSEEEG00000010811 #30 mapre2 (ENSEEEG00000010810) #31 dtna (ENSEEEG00000010794) #32 KLHL14 (ENSEEEG00000010786) #34 abcd4 (ENSEEEG00000010660) ENSEEEG00000010642 #12 ENSEEEG00000010634 ##12 ENSEEEG00000010448 Channel catfish MODERN SPECIES ndufa3 (ENSIPUG00000000151) tfpt (ENSIPUG00000000150) mrpl51 (ENSIPUG00000000149) arnt (ENSIPUG00000000148) NAGLU (ENSIPUG00000000147) coasy (ENSIPUG00000000146) ENSIPUG00000000145 abcb8 (ENSIPUG00000000144) #14 atg9b (ENSIPUG00000000143) #13 ENSIPUG00000000142 #16 scnn1a (ENSIPUG00000000141) #16 zgc:92591 (ENSIPUG00000000140) #18 asb10 (ENSIPUG00000000139) #19 gbx1 (ENSIPUG00000000138) #20 agap3 (ENSIPUG00000000137) #21 rb1cc1 (ENSIPUG00000000136) #22 ST18 (ENSIPUG00000000135) #23 ENSIPUG00000000134 #23 pcmtd1 (ENSIPUG00000000133) #24 sntg1 (ENSIPUG00000000132) #25 snai2 (ENSIPUG00000000131) ube2v2 (ENSIPUG00000000130) #27 mcm4 (ENSIPUG00000000129) #28 mapre2 (ENSIPUG00000000128) #31 spidr (ENSIPUG00000000127) #30 cebpd (ENSIPUG00000000126) #29 dtna (ENSIPUG00000000125) #32 ENSIPUG00000000124 #33 ENSIPUG00000000123 klhl14 (ENSIPUG00000000122) ENSIPUG00000000121 #12 Cyprinoidei ANCESTRAL SPECIES 133 ENSGT00390000009127 ENSGT00940000155450.d ENSGT00940000164265.C ENSGT00950000182910.a.b.b ENSGT00940000156056.B.c.b ENSGT00940000160805 #15 ENSGT00940000159126 #14 ENSGT00390000014839.a #13 ENSGT00940000164727.b #16 ENSGT00940000164727.a.a #16 ENSGT00940000165535 #17 ENSGT01100000263569.a.a #18 ENSGT00940000158974 #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a #26 ENSGT00740000115534.a.b.k.a #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000166855 #33 ENSGT00940000171212 ENSGT00940000159556 #34 ENSGT00950000182955.a.a.b ENSGT00940000154756.B.o.a ##12 Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 32 ENSGT00940000158259.b.b ENSGT00400000022514.c.a ENSGT00390000009127.l ENSGT00940000155450.d.i ENSGT00940000158992 ENSGT00940000164265.C ENSGT00950000182910.a.b.b.d ENSGT00940000156056.B.c.b.d ENSGT00940000160805 #15 ENSGT00940000159126 #14 ENSGT00390000014839.a.f #13 ENSGT00940000164727.b.d #16 ENSGT00940000158974.m.a #19 ENSGT00940000154365.a.a.b.a #20 ENSGT00940000159586.bb #21 ENSGT00390000015871.e #22 ENSGT00940000159905.cb #23 ENSGT00950000183032.A.b.b.a.b #24 ENSGT00950000182863.B.a.d #25 ENSGT00940000154681.a.a #26 ENSGT00940000154365.a.a.b.b #20 ENSGT00940000159586.cb #21 ENSGT00390000015871.f #22 ENSGT00940000159905.bb #23 ENSGT00950000183032.A.b.b.a.a #24 ENSGT00950000182863.B.a.c #25 ENSGT00940000154681.a.b #26 ENSGT00740000115534.a.b.k.a #27 ENSGT01050000244824.A.r #28 ENSGT01050000244824.A.q #28 ENSGT00940000163032.q #29 Cyprininae_a ANCESTRAL SPECIES 100 ENSGT00400000024709.g.b ENSGT00940000158259.b.b ENSGT00400000022514.c.a ENSGT00390000009127.l ENSGT00940000155450.d.i ENSGT00940000164265.C ENSGT00950000182910.a.b.b.d ENSGT00940000156056.B.c.b.d ENSGT00940000160805.e #15 ENSGT00940000159126 #14 ENSGT00390000014839.a.f #13 ENSGT00940000164727.b.c.b #16 ENSGT00940000158974.m.a #19 ENSGT00940000154365.a.a.b.a #20 ENSGT00940000159586.bb #21 ENSGT00390000015871.e #22 ENSGT00940000159905.cb #23 ENSGT00950000183032.A.b.b.a.b #24 ENSGT00950000182863.B.a.d #25 ENSGT00940000154681.a.a #26 ENSGT01050000244824.A.q #28 ENSGT00940000163032.q #29 ENSGT00490000043329.a.a.b.i #31 ENSGT00940000153897.a.w #32 ENSGT00940000159556.c #34 ENSGT00950000182955.a.a.b.o ENSGT00390000001263.a ENSGT00940000157762.m ENSGT00400000022086.a.l ENSGT00940000173219 ENSGT00510000048348 Common carp reference MODERN SPECIES 14 slc4a2b (ENSCCRG00000024649) ENSCCRG00000071684 ENSCCRG00000052817 rmc1 (ENSCCRG00000030465) ENSCCRG00000030707 cavin4b (ENSCCRG00000078039) tmeff1b (ENSCCRG00000027320) cdk5 (ENSCCRG00000016094) #15 abcb8 (ENSCCRG00000067821) #14 atg9b (ENSCCRG00000016072) #13 asic1c (ENSCCRG00000063481) #16 ENSCCRG00000060417 asb10 (ENSCCRG00000078815) #19 gbx1 (ENSCCRG00000033066) #20 AGAP3 (ENSCCRG00000072061) #21 ENSCCRG00000016855 #22 ST18 (ENSCCRG00000010794) #23 pcmtd1 (ENSCCRG00000066894) #24 snai2 (ENSCCRG00000059025) #26 ENSCCRG00000032719 #25 ube2v2 (ENSCCRG00000072674) #27 mcm4 (ENSCCRG00000065776) #28 cebpd (ENSCCRG00000070146) #29 mapre2 (ENSCCRG00000071866) #31 dtna (ENSCCRG00000052403) #32 KLHL14 (ENSCCRG00000069707) #34 abcd4 (ENSCCRG00000010117) ENSCCRG00000074043 ##12 ENSCCRG00000074704 ##12 tmem14cb (ENSCCRG00000036484) ENSCCRG00000032489 Golden-line barbel MODERN SPECIES 269 slc4a2b (ENSSGRG00000045483) ENSSGRG00000045485 ENSSGRG00000045486 rmc1 (ENSSGRG00000045507) ENSSGRG00000045943 cavin4b (ENSSGRG00000045944) tmeff1b (ENSSGRG00000045945) abcb8 (ENSSGRG00000045946) #14 atg9b (ENSSGRG00000046094) #13 ENSSGRG00000046113 #16 ENSSGRG00000046114 #16 ENSSGRG00000046115 #17 asb10 (ENSSGRG00000046116) #19 ENSSGRG00000046117 #20 AGAP3 (ENSSGRG00000046120) #21 RB1CC1 (ENSSGRG00000046155) #22 ENSSGRG00000047333 #23 pcmtd1 (ENSSGRG00000047335) #24 SNTG1 (ENSSGRG00000047336) #25 snai2 (ENSSGRG00000047357) #26 UBE2V2 (ENSSGRG00000047358) #27 mcm4 (ENSSGRG00000047360) #28 cebpd (ENSSGRG00000047395) #29 mapre2 (ENSSGRG00000047398) #31 dtna (ENSSGRG00000047399) #32 KLHL14 (ENSSGRG00000047402) #34 ENSSGRG00000047403 abcd4 (ENSSGRG00000047404) pak1ip1 (ENSSGRG00000048135) ENSSGRG00000048136 ENSSGRG00000048138 Goldfish MODERN SPECIES 1513 zgc:195173 (ENSCARG00000054783) si:ch1073-406l10.2 (ENSCARG00000054735) slc4a2b (ENSCARG00000052611) ENSCARG00000052402 ENSCARG00000049928 rmc1 (ENSCARG00000049765) ENSCARG00000041888 cavin4b (ENSCARG00000041599) tmeff1b (ENSCARG00000041544) abcb8 (ENSCARG00000041203) #14 atg9b (ENSCARG00000041151) #13 asic1c (ENSCARG00000040992) #16 asb10 (ENSCARG00000040960) #19 gbx1 (ENSCARG00000040936) #20 AGAP3 (ENSCARG00000039649) #21 RB1CC1 (ENSCARG00000036018) #22 ENSCARG00000035643 #23 pcmtd1 (ENSCARG00000035588) #24 SNTG1 (ENSCARG00000035513) #25 snai2 (ENSCARG00000035497) #26 UBE2V2 (ENSCARG00000035421) #27 mcm4 (ENSCARG00000034639) #28 cebpd (ENSCARG00000034600) #29 mapre2 (ENSCARG00000034587) #31 dtna (ENSCARG00000034409) #32 KLHL14 (ENSCARG00000034391) #34 abcd4 (ENSCARG00000032531) ENSCARG00000032439 #12 ENSCARG00000032411 #12 ENSCARG00000032400 ##12 ENSCARG00000032396 ##12 Cyprininae ANCESTRAL SPECIES 32 ENSGT00940000156056.B.c.b.d ENSGT00940000160805 #15 ENSGT00940000159126 #14 ENSGT00390000014839.a.f #13 ENSGT00940000164727.b.d #16 ENSGT00940000158974.m.a #19 ENSGT00940000154365.a.a.b.a #20 ENSGT00940000159586.bb #21 ENSGT00390000015871.e #22 ENSGT00940000159905.cb #23 ENSGT00950000183032.A.b.b.a.b #24 ENSGT00950000182863.B.a.d #25 ENSGT00940000154681.a.a #26 ENSGT00940000154365.a.a.b.b #20 ENSGT00940000159586.cb #21 ENSGT00390000015871.f #22 ENSGT00940000159905.bb #23 ENSGT00950000183032.A.b.b.a.a #24 ENSGT00950000182863.B.a.c #25 ENSGT00940000154681.a.b #26 ENSGT00740000115534.a.b.k.a #27 ENSGT01050000244824.A.r #28 ENSGT01050000244824.A.q #28 ENSGT00940000163032.q #29 ENSGT00490000043329.a.a.b.i #31 ENSGT00940000153897.a.w #32 ENSGT00940000159556.c #34 ENSGT00950000182955.a.a.b.o ENSGT00940000154756.A #12 ENSGT00940000154756.B.p.i.a.b.a ##12 ENSGT00940000177473 Cyprininae_a ANCESTRAL SPECIES 140 ENSGT00940000160805.f #15 ENSGT00390000014839.a.e #13 ENSGT00940000164727.b.c.a #16 ENSGT00940000164727.a.a #16 ENSGT00940000165535.y #17 ENSGT01100000263569.a.a #18 ENSGT00940000158974.m.b #19 ENSGT00940000154365.a.a.b.b #20 ENSGT00940000159586.cb #21 ENSGT00390000015871.f #22 ENSGT00940000159905.bb #23 ENSGT00950000183032.A.b.b.a.a #24 ENSGT00950000182863.B.a.c #25 ENSGT00940000154681.a.b #26 ENSGT00740000115534.a.b.k.a #27 ENSGT01050000244824.A.r #28 ENSGT00940000163032.r #29 ENSGT00990000204685 ENSGT00490000043329.a.a.b.j #31 ENSGT00940000153897.a.x #32 ENSGT00940000166855 #33 ENSGT00940000159556.d #34 ENSGT00950000182955.a.a.b.p ENSGT00940000154756.A #12 ENSGT00940000154756.B.p.i.a.b.a ##12 Common carp reference MODERN SPECIES 40 slc4a2b (ENSCCRG00000054244) ENSCCRG00000027854 rmc1 (ENSCCRG00000027983) ENSCCRG00000029241 ENSCCRG00000029344 cavin4b (ENSCCRG00000061698) tmeff1b (ENSCCRG00000029466) cdk5 (ENSCCRG00000016113) #15 atg9b (ENSCCRG00000053270) #13 asic1c (ENSCCRG00000016064) #16 ENSCCRG00000079509 zgc:92591 (ENSCCRG00000025766) #18 asb10 (ENSCCRG00000033070) #19 gbx1 (ENSCCRG00000064481) #20 AGAP3 (ENSCCRG00000033152) #21 RB1CC1 (ENSCCRG00000016336) #22 ENSCCRG00000010767 #23 pcmtd1 (ENSCCRG00000080487) #24 SNTG1 (ENSCCRG00000006477) #25 snai2 (ENSCCRG00000006444) #26 ube2v2 (ENSCCRG00000080995) #27 mcm4 (ENSCCRG00000022924) #28 cebpd (ENSCCRG00000022921) #29 ENSCCRG00000022913 mapre2 (ENSCCRG00000003670) #31 dtna (ENSCCRG00000052363) #32 ENSCCRG00000052387 #33 KLHL14 (ENSCCRG00000071561) #34 abcd4 (ENSCCRG00000030339) ENSCCRG00000057552 ##12 ENSCCRG00000076750 Golden-line barbel MODERN SPECIES 18 rmc1 (ENSSGRG00000015746) ENSSGRG00000015046 ENSSGRG00000015024 cavin4b (ENSSGRG00000015022) tmeff1b (ENSSGRG00000015019) cdk5 (ENSSGRG00000014872) #15 abcb8 (ENSSGRG00000014865) #14 atg9b (ENSSGRG00000014803) #13 ENSSGRG00000014634 #16 ENSSGRG00000014633 #16 ENSSGRG00000014632 #17 zgc:92591 (ENSSGRG00000014631) #18 asb10 (ENSSGRG00000014630) #19 gbx1 (ENSSGRG00000014629) #20 AGAP3 (ENSSGRG00000014420) #21 RB1CC1 (ENSSGRG00000013124) #22 ENSSGRG00000013117 #23 pcmtd1 (ENSSGRG00000013115) #24 SNTG1 (ENSSGRG00000013112) #25 snai2 (ENSSGRG00000013111) #26 ube2v2 (ENSSGRG00000013000) #27 mcm4 (ENSSGRG00000012897) #28 cebpd (ENSSGRG00000012896) #29 ENSSGRG00000012894 mapre2 (ENSSGRG00000012892) #31 dtna (ENSSGRG00000012627) #32 ENSSGRG00000012611 ENSSGRG00000012609 #34 abcd4 (ENSSGRG00000012506) ENSSGRG00000012494 #12 ENSSGRG00000012490 ##12 Goldfish DUPLICATION Goldfish DUPLICATION Goldfish MODERN SPECIES 16 RSU1 (ENSCARG00000024890) CUBN (ENSCARG00000022470) trdmt1 (ENSCARG00000022297) vim (ENSCARG00000022156) PDE1C (ENSCARG00000019617) ENSCARG00000019522 neurod6a (ENSCARG00000019518) EIF1B (ENSCARG00000019509) ENSCARG00000019508 YME1L1 (ENSCARG00000018578) PTCHD3 (ENSCARG00000018535) rdh12l (ENSCARG00000018523) ca2 (ENSCARG00000018491) ENSCARG00000018482 ENSCARG00000018470 RB1CC1 (ENSCARG00000018390) #22 ENSCARG00000018367 plppr5b (ENSCARG00000018359) snx7 (ENSCARG00000018318) ptbp2a (ENSCARG00000018214) FRRS1 (ENSCARG00000018180) ENSCARG00000018172 ENSCARG00000069978 ARHGAP29 (ENSCARG00000069968) abca4a (ENSCARG00000069939) olfm3a (ENSCARG00000069916) col11a1a (ENSCARG00000069867) rnpc3 (ENSCARG00000069839) prmt6 (ENSCARG00000069837) NTNG1 (ENSCARG00000069835) VAV3 (ENSCARG00000069760) Goldfish MODERN SPECIES 16 ENSCARG00000025441 cpne3 (ENSCARG00000025674) cremb (ENSCARG00000029291) abcd3a (ENSCARG00000029311) acp5b (ENSCARG00000029474) f3a (ENSCARG00000029487) alg14 (ENSCARG00000029498) cnn3a (ENSCARG00000029510) TLCD4 (ENSCARG00000029538) hccsb (ENSCARG00000029544) vim (ENSCARG00000029570) trdmt1 (ENSCARG00000029700) CUBN (ENSCARG00000029752) RSU1 (ENSCARG00000030235) C1QL3 (ENSCARG00000030261) RB1CC1 (ENSCARG00000030277) #22 ENSCARG00000030337 #23 pcmtd1 (ENSCARG00000030928) #24 SNTG1 (ENSCARG00000030942) #25 snai2 (ENSCARG00000031017) #26 ube2v2 (ENSCARG00000031032) #27 mcm4 (ENSCARG00000031109) #28 cebpd (ENSCARG00000032012) #29 SPIDR (ENSCARG00000032032) #30 mapre2 (ENSCARG00000032048) #31 dtna (ENSCARG00000032100) #32 ENSCARG00000032215 #33 KLHL14 (ENSCARG00000032228) #34 ENSCARG00000032251 #12 snai2 (ENSCARG00000032446) #26 ENSCARG00000032557 Goldfish MODERN SPECIES 3458 ENSCARG00000056166 #22 Zebrafish MODERN SPECIES 16 ENSDARG00000056888 ENSDARG00000093322 cavin4b (ENSDARG00000056743) tmeff1b (ENSDARG00000056740) cdk5 (ENSDARG00000056683) #15 abcb8 (ENSDARG00000056672) #14 atg9b (ENSDARG00000055292) #13 asic1c (ENSDARG00000098428) #16 H2BK1 (ENSDARG00000088276) #18 asb10 (ENSDARG00000099461) #19 gbx1 (ENSDARG00000071418) #20 AGAP3 (ENSDARG00000087822) #21 ctnna1 (ENSDARG00000102441) LRRTM2 (ENSDARG00000071374) ENSDARG00000036117 RB1CC1 (ENSDARG00000076559) #22 pcmtd1 (ENSDARG00000053152) #24 SNTG1 (ENSDARG00000061832) #25 snai2 (ENSDARG00000040046) #26 ube2v2 (ENSDARG00000028198) #27 mcm4 (ENSDARG00000040041) #28 cebpd (ENSDARG00000087303) #29 mapre2 (ENSDARG00000099943) #31 dtna (ENSDARG00000031015) #32 ENSDARG00000090429 #33 ENSDARG00000093709 KLHL14 (ENSDARG00000045275) #34 abcd4 (ENSDARG00000061770) ENSDARG00000022101 ##12 ENSDARG00000075850 ENSDARG00000102797 Osteoglossiformes ANCESTRAL SPECIES 36 ENSGT00940000167421 ENSGT00940000177117 #10 ENSGT00940000177473 ENSGT00940000154756.B ##12 ENSGT00940000154756.A #12 ENSGT00940000166913 ENSGT00970000196942 ENSGT00390000014839.a #13 ENSGT00940000159126 #14 ENSGT00940000160805 #15 ENSGT00940000164727 #16 ENSGT01100000263569.a.a #18 ENSGT00940000158974.cb #19 ENSGT00940000154365.a.a #20 ENSGT00940000159586 #21 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.b.b.a #24 ENSGT00940000159059.h ENSGT00940000157153.y ENSGT00940000159347.e ENSGT00940000157354.j ENSGT00940000154843.F.a ENSGT00940000156328.a.a.b ENSGT00940000158092.p ENSGT00940000157394.b ENSGT00940000154872.A ENSGT00940000156080.k ENSGT00940000155842.s.a ENSGT00940000158137.c.a.d ENSGT00950000183111.b.a.a P. kingsleyae MODERN SPECIES 15 ENSPKIG00000005347 #10 ENSPKIG00000005336 ENSPKIG00000005320 ##12 ENSPKIG00000005312 ENSPKIG00000005292 ##12 ENSPKIG00000005273 #12 ENSPKIG00000005248 atg9b (ENSPKIG00000005206) #13 abcb8 (ENSPKIG00000005114) #14 cdk5 (ENSPKIG00000005046) #15 ENSPKIG00000004980 zgc:92591 (ENSPKIG00000004929) #18 asb10 (ENSPKIG00000004900) #19 gbx1 (ENSPKIG00000004870) #20 AGAP3 (ENSPKIG00000004850) #21 RB1CC1 (ENSPKIG00000004705) #22 ENSPKIG00000004448 #23 ENSPKIG00000004373 #24 irf4a (ENSPKIG00000004352) dusp22b (ENSPKIG00000004330) ripk1l (ENSPKIG00000004307) slc22a23 (ENSPKIG00000004246) DSP (ENSPKIG00000004145) TNS3 (ENSPKIG00000004086) ENSPKIG00000004066 IGFBP3 (ENSPKIG00000004049) igfbp1b (ENSPKIG00000004028) adcy1b (ENSPKIG00000003972) SIRT5 (ENSPKIG00000003892) PHACTR1 (ENSPKIG00000003807) ENSPKIG00000003763 Asian bonytongue MODERN SPECIES 22 ENSSFOG00015009441 #12 ENSSFOG00015028600 #10 ENSSFOG00015030541 ENSSFOG00015009380 #12 ENSSFOG00015009339 #12 ENSSFOG00015009333 ENSSFOG00015009318 atg9b (ENSSFOG00015009299) #13 abcb8 (ENSSFOG00015009232) #14 cdk5 (ENSSFOG00015009165) #15 asic1c (ENSSFOG00015009088) #16 zgc:92591 (ENSSFOG00015028630) #18 asb10 (ENSSFOG00015009013) #19 gbx1 (ENSSFOG00015032296) #20 AGAP3 (ENSSFOG00015008908) #21 RB1CC1 (ENSSFOG00015008736) #22 ENSSFOG00015008666 #23 ENSSFOG00015008619 #24 irf4a (ENSSFOG00015008571) dusp22b (ENSSFOG00015008499) ripk1l (ENSSFOG00015008445) slc22a23 (ENSSFOG00015008389) DSP (ENSSFOG00015008351) TNS3 (ENSSFOG00015008230) IGFBP3 (ENSSFOG00015025701) igfbp1b (ENSSFOG00015028265) adcy1b (ENSSFOG00015008135) SIRT5 (ENSSFOG00015008096) PHACTR1 (ENSSFOG00015008053) PHLPP1 (ENSSFOG00015007990) MEP1B (ENSSFOG00015007921) Spotted gar MODERN SPECIES 675 zgc:56231 (ENSLOCG00000005434) lyn (ENSLOCG00000005468) TGS1 (ENSLOCG00000005492) tmem68 (ENSLOCG00000005519) ENSLOCG00000005543 ENSLOCG00000005555 ENSLOCG00000005569 ENSLOCG00000005583 sox17 (ENSLOCG00000005646) mrpl15 (ENSLOCG00000005663) lypla1 (ENSLOCG00000005686) tcea1 (ENSLOCG00000005699) rgs20 (ENSLOCG00000005737) atp6v1h (ENSLOCG00000005751) oprk1 (ENSLOCG00000005766) RB1CC1 (ENSLOCG00000005780) #22 alkal1 (ENSLOCG00000005827) ST18 (ENSLOCG00000005847) #23 ENSLOCG00000005913 ##24 PXDNL (ENSLOCG00000005932) SNTG1 (ENSLOCG00000005945) #25 SNAI2 (ENSLOCG00000005992) ube2v2 (ENSLOCG00000006012) #27 mcm4 (ENSLOCG00000006026) #28 PRKDC (ENSLOCG00000006046) cebpd (ENSLOCG00000017816) #29 SPIDR (ENSLOCG00000006093) #30 ENSLOCG00000006110 mapre2 (ENSLOCG00000006134) #31 dtna (ENSLOCG00000006152) #32 NOL4 (ENSLOCG00000006177) Reedfish MODERN SPECIES 14 zgc:56231 (ENSECRG00000005023) TGS1 (ENSECRG00000005011) tmem68 (ENSECRG00000004995) ENSECRG00000004978 XKR4 (ENSECRG00000004968) ENSECRG00000004792 SOX17 (ENSECRG00000004721) sox32 (ENSECRG00000004710) mrpl15 (ENSECRG00000004697) lypla1 (ENSECRG00000004670) tcea1 (ENSECRG00000004649) rgs20 (ENSECRG00000004639) atp6v1h (ENSECRG00000004621) oprk1 (ENSECRG00000004611) NPBWR1 (ENSECRG00000004600) RB1CC1 (ENSECRG00000004580) #22 ENSECRG00000004549 ST18 (ENSECRG00000004509) #23 ENSECRG00000004488 ##24 PXDNL (ENSECRG00000004465) SNTG1 (ENSECRG00000004438) #25 SNAI2 (ENSECRG00000004405) ube2v2 (ENSECRG00000004380) #27 mcm4 (ENSECRG00000006775) #28 PRKDC (ENSECRG00000006128) cebpd (ENSECRG00000005879) #29 SPIDR (ENSECRG00000005855) #30 ENSECRG00000005839 mapre2 (ENSECRG00000005807) #31 dtna (ENSECRG00000005776) #32 NOL4 (ENSECRG00000005742) Sarcopterygii ANCESTRAL SPECIES 3 ENSGT00940000164689 ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000164647 ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00950000183117.b ENSGT00940000153804.A ENSGT00940000155086.A ENSGT00940000166976 Coelacanth MODERN SPECIES 831 ENSLACG00000005055 ENSLACG00000007562 #22 ENSLACG00000009584 #22 Tetrapoda ANCESTRAL SPECIES 1 ENSGT00940000164689 ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000164647 ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00950000183117.b ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000159992 Frog MODERN SPECIES 6 lyn (ENSXETG00000005650) tgs1 (ENSXETG00000005648) tmem68 (ENSXETG00000005647) xkr4 (ENSXETG00000040558) ENSXETG00000046099 ENSXETG00000039668 sox17a (ENSXETG00000026438) mrpl15 (ENSXETG00000008103) lypla1 (ENSXETG00000008101) tcea1 (ENSXETG00000008099) rgs20 (ENSXETG00000008098) atp6v1h (ENSXETG00000008095) oprk1 (ENSXETG00000008092) npbwr2 (ENSXETG00000005682) ENSXETG00000035796 rb1cc1 (ENSXETG00000005678) #22 alkal1 (ENSXETG00000041022) st18 (ENSXETG00000005673) #23 PCMTD1 (ENSXETG00000033680) ##24 sntg1 (ENSXETG00000005667) #25 ENSXETG00000040031 snai2 (ENSXETG00000024006) ENSXETG00000041725 XB22062446 [provisional] (ENSXETG00000036668) ube2v2 (ENSXETG00000048783) #27 mcm4 (ENSXETG00000004854) #28 prkdc (ENSXETG00000004851) cebpd (ENSXETG00000039828) #29 sox6 (ENSXETG00000004847) #30 ENSXETG00000035118 mapre2 (ENSXETG00000035703) #31 Leishan spiny toad MODERN SPECIES 8 TGS1 (ENSLLEG00000007409) TMEM68 (ENSLLEG00000007557) XKR4 (ENSLLEG00000007595) ENSLLEG00000007636 ENSLLEG00000007667 ENSLLEG00000007683 ENSLLEG00000007695 MRPL15 (ENSLLEG00000007717) LYPLA1 (ENSLLEG00000007812) TCEA1 (ENSLLEG00000007847) RGS20 (ENSLLEG00000007897) ATP6V1H (ENSLLEG00000008003) OPRK1 (ENSLLEG00000008954) NPBWR1 (ENSLLEG00000009003) ENSLLEG00000009056 RB1CC1 (ENSLLEG00000009254) #22 ALKAL1 (ENSLLEG00000009469) ENSLLEG00000009614 ENSLLEG00000009643 ENSLLEG00000009701 #23 PCMTD1 (ENSLLEG00000010301) ##24 ENSLLEG00000010405 SNTG1 (ENSLLEG00000010468) #25 ENSLLEG00000011046 ENSLLEG00000011159 ENSLLEG00000011182 ENSLLEG00000011206 #26 ENSLLEG00000011259 ENSLLEG00000011303 UBE2V2 (ENSLLEG00000011624) #27 MCM4 (ENSLLEG00000011829) #28 Amniota ANCESTRAL SPECIES 3 ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000164647 ENSGT00940000154242.b ENSGT00940000156694 ENSGT00940000175507 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000154681.a #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00990000204685 ENSGT00940000164631 ENSGT00390000014654 #30 Sauria ANCESTRAL SPECIES ENSGT00390000018056 ENSGT00390000011782.k.b ENSGT00390000011782.l ENSGT01070000253766.A.b ENSGT00940000164647 ENSGT00940000154242.b ENSGT00940000156694 ENSGT00940000175507 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00940000164631 ENSGT00950000183117.b ENSGT00490000043329.a.a.b #31 Laterata ANCESTRAL SPECIES 5 ENSGT00390000011782.k.a.a.a.b.b ENSGT00390000011782.k.a.a.a.a.a.a ENSGT00390000011782.k.b.b ENSGT00390000011782.k.b.a ENSGT00390000011782.l ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00960000192544 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000159992 Common wall lizard MODERN SPECIES 15 ENSPMRG00000004312 ENSPMRG00000004318 ENSPMRG00000004323 ENSPMRG00000004330 ENSPMRG00000004339 XKR4 (ENSPMRG00000004346) ENSPMRG00000004363 SOX17 (ENSPMRG00000004458) MRPL15 (ENSPMRG00000004469) LYPLA1 (ENSPMRG00000004479) TCEA1 (ENSPMRG00000004488) RGS20 (ENSPMRG00000004503) ATP6V1H (ENSPMRG00000004521) OPRK1 (ENSPMRG00000004539) NPBWR1 (ENSPMRG00000004547) RB1CC1 (ENSPMRG00000004572) #22 ALKAL1 (ENSPMRG00000004608) ST18 (ENSPMRG00000004640) #23 PCMTD1 (ENSPMRG00000004718) ##24 ENSPMRG00000004722 SNTG1 (ENSPMRG00000004728) #25 PPDPFL (ENSPMRG00000004740) SNAI2 (ENSPMRG00000004744) UBE2V2 (ENSPMRG00000004746) #27 MCM4 (ENSPMRG00000004750) #28 PRKDC (ENSPMRG00000004815) CEBPD (ENSPMRG00000004903) #29 ENSPMRG00000004912 ENSPMRG00000004923 MAPRE2 (ENSPMRG00000004926) #31 DTNA (ENSPMRG00000004954) #32 Argentine black and white tegu MODERN SPECIES 4 ENSSMRG00000010419 ENSSMRG00000010469 ENSSMRG00000010476 ENSSMRG00000010481 ENSSMRG00000010484 XKR4 (ENSSMRG00000010501) ENSSMRG00000010529 SOX17 (ENSSMRG00000010532) MRPL15 (ENSSMRG00000010567) LYPLA1 (ENSSMRG00000010569) TCEA1 (ENSSMRG00000010570) RGS20 (ENSSMRG00000010572) ATP6V1H (ENSSMRG00000010676) OPRK1 (ENSSMRG00000010677) NPBWR1 (ENSSMRG00000010681) RB1CC1 (ENSSMRG00000010774) #22 ALKAL1 (ENSSMRG00000010815) ST18 (ENSSMRG00000010953) #23 PCMTD1 (ENSSMRG00000010954) ##24 SNTG1 (ENSSMRG00000010983) #25 ENSSMRG00000011028 #26 UBE2V2 (ENSSMRG00000011047) #27 MCM4 (ENSSMRG00000011050) #28 PRKDC (ENSSMRG00000011051) CEBPD (ENSSMRG00000011054) #29 SPIDR (ENSSMRG00000011112) #30 ENSSMRG00000011115 MAPRE2 (ENSSMRG00000011156) #31 DTNA (ENSSMRG00000011231) #32 NOL4 (ENSSMRG00000011346) ASXL3 (ENSSMRG00000011389) Toxicofera ANCESTRAL SPECIES 8 ENSGT00940000170053 ENSGT00390000011782.k.a.a.a.a.a.a ENSGT00390000011782.k.b.b ENSGT00390000011782.k.b.a ENSGT00390000011782.l ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00950000183117.b ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000159992 ENSGT00520000055578.a.a.d ENSGT00940000159556 #34 Elapidae DUPLICATION Elapidae ANCESTRAL SPECIES 8 ENSGT00390000011782.k.b.b ENSGT00390000011782.k.b.a ENSGT00390000011782.l.b ENSGT00390000011782.l.a.a ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121.a.a ENSGT00940000155121.b ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871.m #22 ENSGT00940000159969.a ENSGT00940000159905.a #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00960000192544 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000159992 ENSGT00520000055578.a.a.d ENSGT00940000159556 #34 Indian cobra MODERN SPECIES 2 ENSNNAG00000017371 ENSNNAG00000017363 ENSNNAG00000017358 ENSNNAG00000017346 ENSNNAG00000017341 XKR4 (ENSNNAG00000017337) ENSNNAG00000017280 SOX17 (ENSNNAG00000017262) MRPL15 (ENSNNAG00000017230) LYPLA1 (ENSNNAG00000017221) TCEA1 (ENSNNAG00000017209) ENSNNAG00000017201 ATP6V1H (ENSNNAG00000017193) OPRK1 (ENSNNAG00000017186) NPBWR1 (ENSNNAG00000017183) RB1CC1 (ENSNNAG00000017145) #22 ALKAL1 (ENSNNAG00000017134) ST18 (ENSNNAG00000017018) #23 PCMTD1 (ENSNNAG00000016981) ##24 SNTG1 (ENSNNAG00000016965) #25 ENSNNAG00000016959 #26 UBE2V2 (ENSNNAG00000016952) #27 MCM4 (ENSNNAG00000016935) #28 PRKDC (ENSNNAG00000015678) SPIDR (ENSNNAG00000015492) #30 MAPRE2 (ENSNNAG00000015462) #31 ENSNNAG00000015442 #32 ENSNNAG00000015400 #32 ENSNNAG00000015369 #32 ENSNNAG00000015361 #32 NOL4 (ENSNNAG00000015349) Elapidae_a ANCESTRAL SPECIES 14 ENSGT00940000170053.d ENSGT00390000011782.k.b.b ENSGT00390000011782.k.b.a ENSGT00390000011782.l.b ENSGT00390000011782.l.a.a ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121.b ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871.m #22 ENSGT00940000159969.a ENSGT00390000015871.n #22 ENSGT00940000159905.a #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00960000192544 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000159992 Blue-lipped sea krait MODERN SPECIES 9467 ENSLLTG00000015270 #22 Eastern brown snake MODERN SPECIES 11 ENSPTXG00000000721 ENSPTXG00000000736 ENSPTXG00000001051 ENSPTXG00000001056 XKR4 (ENSPTXG00000001142) ENSPTXG00000001160 SOX17 (ENSPTXG00000001182) MRPL15 (ENSPTXG00000001187) LYPLA1 (ENSPTXG00000001193) TCEA1 (ENSPTXG00000001199) ENSPTXG00000001208 ATP6V1H (ENSPTXG00000001212) ENSPTXG00000001218 ENSPTXG00000001220 NPBWR1 (ENSPTXG00000001222) RB1CC1 (ENSPTXG00000001226) #22 ALKAL1 (ENSPTXG00000001230) ENSPTXG00000001233 ST18 (ENSPTXG00000001238) #23 PCMTD1 (ENSPTXG00000001249) ##24 SNTG1 (ENSPTXG00000001256) #25 ENSPTXG00000001260 #26 UBE2V2 (ENSPTXG00000001263) #27 ENSPTXG00000001270 #28 PRKDC (ENSPTXG00000001486) SPIDR (ENSPTXG00000002357) #30 MAPRE2 (ENSPTXG00000002362) #31 DTNA (ENSPTXG00000002369) #32 ENSPTXG00000002376 NOL4 (ENSPTXG00000002382) ENSPTXG00000002423 Elapidae ANCESTRAL SPECIES ENSGT00390000015871.n #22 Elapidae_a ANCESTRAL SPECIES 14 ENSGT00390000011782.k.b.a ENSGT00390000011782.l.b ENSGT00390000011782.l.a.a ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121.b ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871.m #22 ENSGT00940000159969.a ENSGT00390000015871.n #22 ENSGT00940000159905.a #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00960000192544 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000159992 ENSGT00520000055578.a.a.d ENSGT00940000159556 #34 Acanthophiinae ANCESTRAL SPECIES 16 ENSGT00390000011782.k.b.a ENSGT00390000011782.l.b ENSGT00390000011782.l.a.a ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121.b ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871.m #22 ENSGT00940000159969.a ENSGT00390000015871.n #22 ENSGT00940000159905.a #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00960000192544 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000159992 ENSGT00520000055578.a.a.d ENSGT00940000159556 #34 Mainland tiger snake DUPLICATION Mainland tiger snake MODERN SPECIES 32 ENSNSUG00000001098 ENSNSUG00000001067 ENSNSUG00000001013 ENSNSUG00000000965 XKR4 (ENSNSUG00000000961) ENSNSUG00000000948 SOX17 (ENSNSUG00000000947) MRPL15 (ENSNSUG00000000946) LYPLA1 (ENSNSUG00000000767) TCEA1 (ENSNSUG00000000729) RGS20 (ENSNSUG00000000718) ATP6V1H (ENSNSUG00000000390) OPRK1 (ENSNSUG00000000306) NPBWR1 (ENSNSUG00000000280) ENSNSUG00000000251 #22 ENSNSUG00000000236 #22 ST18 (ENSNSUG00000000187) #23 PCMTD1 (ENSNSUG00000000182) ##24 SNTG1 (ENSNSUG00000000093) #25 ENSNSUG00000000060 #26 UBE2V2 (ENSNSUG00000000038) #27 MCM4 (ENSNSUG00000000013) #28 PRKDC (ENSNSUG00000020198) CEBPD (ENSNSUG00000020197) #29 ENSNSUG00000020196 #29 SPIDR (ENSNSUG00000020195) #30 ENSNSUG00000020194 MAPRE2 (ENSNSUG00000020193) #31 ENSNSUG00000020192 #32 ENSNSUG00000020191 #32 NOL4 (ENSNSUG00000020180) tuatara MODERN SPECIES 825 RB1CC1 (ENSSPUG00000008788) #22 ALKAL1 (ENSSPUG00000008774) ST18 (ENSSPUG00000008746) #23 PCMTD1 (ENSSPUG00000008731) ##24 Aves ANCESTRAL SPECIES 9 ENSGT00390000018056 ENSGT00390000011782.k.b ENSGT00390000011782.l ENSGT01070000253766.A.b ENSGT00940000164647 ENSGT00940000154242.b ENSGT00940000156694 ENSGT00940000175507 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00800000125285 ENSGT00940000168921 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00940000164631 ENSGT00950000183117.b ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 Neognathae ANCESTRAL SPECIES ENSGT00390000018056 ENSGT00390000011782.k.b ENSGT00390000011782.l ENSGT01070000253766.A.b ENSGT00940000164647 ENSGT00940000154242.b ENSGT00940000156694 ENSGT00940000175507 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00800000125285 ENSGT00940000168921 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00940000164631 ENSGT00950000183117.b ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 Galloanserae ANCESTRAL SPECIES ENSGT00390000011782.k.b ENSGT00390000011782.l ENSGT01070000253766.A.b ENSGT00940000154242.b.f ENSGT00940000164647.b ENSGT00940000154242.b.e ENSGT00940000156694 ENSGT00940000175507 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000168921 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00940000164631 ENSGT00950000183117.b ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 Anatidae ANCESTRAL SPECIES 3 ENSGT00390000018056 ENSGT00390000011782.k.b ENSGT00390000011782.l ENSGT01070000253766.A.b ENSGT00940000154242.b.f ENSGT00940000164647.b ENSGT00940000154242.b.e ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000168921 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00990000204685 ENSGT00390000014654 #30 ENSGT00950000183117.b ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 Pink-footed goose MODERN SPECIES 13 OPRK1 (ENSABRG00000012517) NPBWR1 (ENSABRG00000012520) RB1CC1 (ENSABRG00000012521) #22 ALKAL1 (ENSABRG00000012532) ST18 (ENSABRG00000012541) #23 PCMTD1 (ENSABRG00000012559) ##24 SNTG1 (ENSABRG00000012576) #25 PPDPFL (ENSABRG00000012606) ENSABRG00000012623 #26 ENSABRG00000012630 UBE2V2 (ENSABRG00000012641) #27 MCM4 (ENSABRG00000012661) #28 PRKDC (ENSABRG00000013205) CEBPD (ENSABRG00000015622) #29 SPIDR (ENSABRG00000015629) #30 ENSABRG00000015642 ENSABRG00000015652 MAPRE2 (ENSABRG00000015659) #31 Duck MODERN SPECIES 10 ENSAPLG00000026911 GNAL (ENSAPLG00000012611) ENSAPLG00000025408 MPPE1 (ENSAPLG00000012473) IMPA2 (ENSAPLG00000021120) CIDEA (ENSAPLG00000011917) TUBB6 (ENSAPLG00000011845) AFG3L2 (ENSAPLG00000011183) PRELID3A (ENSAPLG00000010888) SPIRE1 (ENSAPLG00000010595) ENSAPLG00000010185 ENSAPLG00000020037 PSMG2 (ENSAPLG00000010098) PTPN2 (ENSAPLG00000009603) ENSAPLG00000000790 RB1CC1 (ENSAPLG00000003339) #22 ENSAPLG00000016796 ALKAL1 (ENSAPLG00000017834) ST18 (ENSAPLG00000003822) #23 PCMTD1 (ENSAPLG00000021741) ##24 SNTG1 (ENSAPLG00000003975) #25 ENSAPLG00000003920 #26 UBE2V2 (ENSAPLG00000022160) #27 MCM4 (ENSAPLG00000003491) #28 PRKDC (ENSAPLG00000002697) CEBPD (ENSAPLG00000019306) #29 ENSAPLG00000023254 ENSAPLG00000002521 MAPRE2 (ENSAPLG00000016320) #31 DTNA (ENSAPLG00000015988) #32 ENSAPLG00000025789 Phasianidae ANCESTRAL SPECIES 1 ENSGT00390000011782.k.b ENSGT00390000011782.l ENSGT01070000253766.A.b ENSGT00940000164647.b ENSGT00940000164647.a ENSGT00940000154242.b.e ENSGT00940000156694 ENSGT00940000175507 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a.h #25 ENSGT00390000009113.a.b ENSGT00940000168921 ENSGT00740000115534.a.b.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00940000164631 ENSGT00950000183117.b ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 Japanese quail MODERN SPECIES 11 ENSCJPG00005010400 ENSCJPG00005010399 XKR4 (ENSCJPG00005010398) ENSCJPG00005010397 ENSCJPG00005010396 ENSCJPG00005010395 ENSCJPG00005010394 ENSCJPG00005010393 MRPL15 (ENSCJPG00005010389) LYPLA1 (ENSCJPG00005010388) TCEA1 (ENSCJPG00005010387) RGS20 (ENSCJPG00005010386) ATP6V1H (ENSCJPG00005010385) OPRK1 (ENSCJPG00005010383) NPBWR1 (ENSCJPG00005010382) RB1CC1 (ENSCJPG00005010381) #22 ALKAL1 (ENSCJPG00005010380) ST18 (ENSCJPG00005010379) #23 PCMTD1 (ENSCJPG00005010378) ##24 SNTG1 (ENSCJPG00005010374) #25 ENSCJPG00005010371 ENSCJPG00005010366 #26 UBE2V2 (ENSCJPG00005010359) #27 MCM4 (ENSCJPG00005010358) #28 PRKDC (ENSCJPG00005009994) CEBPD (ENSCJPG00005009986) #29 SPIDR (ENSCJPG00005009985) #30 ENSCJPG00005009984 MAPRE2 (ENSCJPG00005009982) #31 DTNA (ENSCJPG00005009975) #32 NOL4 (ENSCJPG00005009965) Neognathae_c ANCESTRAL SPECIES 1 ENSGT00390000003248.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782.k.b ENSGT00390000011782.l ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00950000183117.b ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000159992 ENSGT00520000055578.a.a.d Golden eagle MODERN SPECIES 20 LYN (ENSACCG00020004192) TGS1 (ENSACCG00020004203) ENSACCG00020004212 ENSACCG00020004218 XKR4 (ENSACCG00020004225) ENSACCG00020004270 ENSACCG00020004307 ENSACCG00020004317 MRPL15 (ENSACCG00020004324) LYPLA1 (ENSACCG00020004335) TCEA1 (ENSACCG00020004347) RGS20 (ENSACCG00020004352) ATP6V1H (ENSACCG00020004369) OPRK1 (ENSACCG00020004384) NPBWR1 (ENSACCG00020004389) RB1CC1 (ENSACCG00020004395) #22 ALKAL1 (ENSACCG00020004405) ST18 (ENSACCG00020004417) #23 PCMTD1 (ENSACCG00020004427) ##24 SNTG1 (ENSACCG00020004440) #25 PPDPFL (ENSACCG00020004450) ENSACCG00020004456 #26 UBE2V2 (ENSACCG00020004464) #27 MCM4 (ENSACCG00020004473) #28 PRKDC (ENSACCG00020004704) ENSACCG00020004799 #29 SPIDR (ENSACCG00020004859) #30 ENSACCG00020004969 MAPRE2 (ENSACCG00020004984) #31 DTNA (ENSACCG00020005033) #32 NOL4 (ENSACCG00020005087) Kakapo MODERN SPECIES RPS20 (ENSSHBG00005003914) LYN (ENSSHBG00005003925) TGS1 (ENSSHBG00005003941) ENSSHBG00005003951 ENSSHBG00005003964 XKR4 (ENSSHBG00005003977) ENSSHBG00005003992 SOX17 (ENSSHBG00005004021) MRPL15 (ENSSHBG00005004022) LYPLA1 (ENSSHBG00005004028) TCEA1 (ENSSHBG00005004032) RGS20 (ENSSHBG00005004043) ATP6V1H (ENSSHBG00005004054) OPRK1 (ENSSHBG00005004058) NPBWR1 (ENSSHBG00005004062) RB1CC1 (ENSSHBG00005004068) #22 ALKAL1 (ENSSHBG00005004074) ST18 (ENSSHBG00005004087) #23 PCMTD1 (ENSSHBG00005004109) ##24 ENSSHBG00005004115 SNTG1 (ENSSHBG00005004119) #25 ENSSHBG00005004127 ENSSHBG00005004128 PPDPFL (ENSSHBG00005004138) ENSSHBG00005004140 #26 UBE2V2 (ENSSHBG00005004145) #27 MCM4 (ENSSHBG00005004173) #28 PRKDC (ENSSHBG00005004378) CEBPD (ENSSHBG00005004497) #29 SPIDR (ENSSHBG00005000553) #30 ENSSHBG00005000555 Passeriformes ANCESTRAL SPECIES ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782.k.b ENSGT00390000011782.l ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000175507 ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00800000125285 ENSGT00940000154511.b ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00940000164631 ENSGT00390000014654 #30 ENSGT00950000183117.b ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 Great tit MODERN SPECIES 11 RPS20 (ENSPMJG00000015709) ENSPMJG00000015708 LYN (ENSPMJG00000015707) TGS1 (ENSPMJG00000015706) ENSPMJG00000015705 ENSPMJG00000015704 XKR4 (ENSPMJG00000015703) ENSPMJG00000015702 MRPL15 (ENSPMJG00000015701) LYPLA1 (ENSPMJG00000015700) TCEA1 (ENSPMJG00000015699) RGS20 (ENSPMJG00000015698) ATP6V1H (ENSPMJG00000015697) OPRK1 (ENSPMJG00000015696) NPBWR1 (ENSPMJG00000015695) RB1CC1 (ENSPMJG00000015694) #22 ALKAL1 (ENSPMJG00000015693) ST18 (ENSPMJG00000015692) #23 PCMTD1 (ENSPMJG00000015691) ##24 SNTG1 (ENSPMJG00000015689) #25 ENSPMJG00000015688 ENSPMJG00000015686 #26 UBE2V2 (ENSPMJG00000015681) #27 MCM4 (ENSPMJG00000015679) #28 PRKDC (ENSPMJG00000014775) CEBPD (ENSPMJG00000014773) #29 SPIDR (ENSPMJG00000014769) #30 ENSPMJG00000014768 MAPRE2 (ENSPMJG00000014767) #31 DTNA (ENSPMJG00000014766) #32 NOL4 (ENSPMJG00000014765) Passeriformes_d ANCESTRAL SPECIES ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782.k.b ENSGT00390000011782.l ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000175507 ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00800000125285 ENSGT00940000154511.b ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00940000164631 ENSGT00390000014654 #30 ENSGT00950000183117.b ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 Flycatcher MODERN SPECIES 11 RPS20 (ENSFALG00000010283) ENSFALG00000010268 LYN (ENSFALG00000010252) TGS1 (ENSFALG00000010249) TMEM68 (ENSFALG00000010240) XKR4 (ENSFALG00000027258) ENSFALG00000010225 ENSFALG00000028228 MRPL15 (ENSFALG00000010221) LYPLA1 (ENSFALG00000028510) TCEA1 (ENSFALG00000022921) RGS20 (ENSFALG00000025416) ATP6V1H (ENSFALG00000010211) OPRK1 (ENSFALG00000010203) NPBWR1 (ENSFALG00000014791) RB1CC1 (ENSFALG00000010200) #22 ALKAL1 (ENSFALG00000028062) ST18 (ENSFALG00000010174) #23 PCMTD1 (ENSFALG00000010160) ##24 SNTG1 (ENSFALG00000005741) #25 PPDPFL (ENSFALG00000005757) ENSFALG00000005762 #26 UBE2V2 (ENSFALG00000005769) #27 MCM4 (ENSFALG00000005778) #28 PRKDC (ENSFALG00000005785) CEBPD (ENSFALG00000014184) #29 SPIDR (ENSFALG00000023516) #30 ENSFALG00000024294 ENSFALG00000023348 MAPRE2 (ENSFALG00000005847) #31 DTNA (ENSFALG00000005863) #32 Passeriformes_g ANCESTRAL SPECIES 3 ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782.k.b ENSGT00390000011782.l ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000175507 ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00940000164631 ENSGT00390000014654 #30 ENSGT00950000183117.b ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000159992 Medium ground finch MODERN SPECIES 8 PLAG1 (ENSGFOG00000003163) MOS (ENSGFOG00000003156) RPS20 (ENSGFOG00000003131) LYN (ENSGFOG00000003118) TGS1 (ENSGFOG00000003094) ENSGFOG00000003078 ENSGFOG00000003064 ENSGFOG00000002930 MRPL15 (ENSGFOG00000002908) LYPLA1 (ENSGFOG00000002893) TCEA1 (ENSGFOG00000002840) RGS20 (ENSGFOG00000002818) ATP6V1H (ENSGFOG00000002804) OPRK1 (ENSGFOG00000002797) NPBWR1 (ENSGFOG00000002789) RB1CC1 (ENSGFOG00000002654) #22 ALKAL1 (ENSGFOG00000002621) ST18 (ENSGFOG00000002585) #23 PCMTD1 (ENSGFOG00000002571) ##24 SNTG1 (ENSGFOG00000002553) #25 ENSGFOG00000002544 ENSGFOG00000002532 SNAI2 (ENSGFOG00000002516) UBE2V2 (ENSGFOG00000002511) #27 MCM4 (ENSGFOG00000009878) #28 ENSGFOG00000009869 PRKDC (ENSGFOG00000006872) SPIDR (ENSGFOG00000006687) #30 ENSGFOG00000006679 MAPRE2 (ENSGFOG00000006641) #31 DTNA (ENSGFOG00000006605) #32 Passeroidea ANCESTRAL SPECIES 2 ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782.k.b ENSGT00390000011782.l ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000175507 ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00940000154681.a #26 ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00940000164631 ENSGT00390000014654 #30 ENSGT00950000183117.b ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 ENSGT00940000159992 Zebra finch MODERN SPECIES 12 LYN (ENSTGUG00000011056) TGS1 (ENSTGUG00000011050) ENSTGUG00000011048 ENSTGUG00000011045 XKR4 (ENSTGUG00000022313) ENSTGUG00000023508 ENSTGUG00000024246 SOX17 (ENSTGUG00000011034) MRPL15 (ENSTGUG00000011032) LYPLA1 (ENSTGUG00000021368) TCEA1 (ENSTGUG00000011012) RGS20 (ENSTGUG00000011005) ATP6V1H (ENSTGUG00000010996) OPRK1 (ENSTGUG00000010985) NPBWR1 (ENSTGUG00000010979) RB1CC1 (ENSTGUG00000010964) #22 ALKAL1 (ENSTGUG00000025647) ST18 (ENSTGUG00000010944) #23 PCMTD1 (ENSTGUG00000010939) ##24 SNTG1 (ENSTGUG00000010922) #25 ENSTGUG00000010914 #26 UBE2V2 (ENSTGUG00000010911) #27 MCM4 (ENSTGUG00000010897) #28 PRKDC (ENSTGUG00000010840) CEBPD (ENSTGUG00000010839) #29 ENSTGUG00000010827 ENSTGUG00000010830 #30 ENSTGUG00000010825 MAPRE2 (ENSTGUG00000010816) #31 DTNA (ENSTGUG00000010797) #32 NOL4 (ENSTGUG00000010787) Common canary MODERN SPECIES MOS (ENSSCAG00000012851) LYN (ENSSCAG00000012839) TGS1 (ENSSCAG00000012835) ENSSCAG00000012830 ENSSCAG00000012825 XKR4 (ENSSCAG00000012812) ENSSCAG00000012792 ENSSCAG00000012784 MRPL15 (ENSSCAG00000012779) LYPLA1 (ENSSCAG00000012773) TCEA1 (ENSSCAG00000012765) RGS20 (ENSSCAG00000012762) ATP6V1H (ENSSCAG00000012757) OPRK1 (ENSSCAG00000012744) NPBWR1 (ENSSCAG00000012738) RB1CC1 (ENSSCAG00000012728) #22 ALKAL1 (ENSSCAG00000012718) ST18 (ENSSCAG00000012704) #23 PCMTD1 (ENSSCAG00000012702) ##24 SNTG1 (ENSSCAG00000012661) #25 ENSSCAG00000012644 #26 ENSSCAG00000012634 UBE2V2 (ENSSCAG00000012600) #27 MCM4 (ENSSCAG00000012481) #28 PRKDC (ENSSCAG00000012431) SPIDR (ENSSCAG00000012410) #30 ENSSCAG00000012390 MAPRE2 (ENSSCAG00000012383) #31 DTNA (ENSSCAG00000012321) #32 NOL4 (ENSSCAG00000012253) ASXL3 (ENSSCAG00000012233) African ostrich MODERN SPECIES 551 MOS (ENSSCUG00000007400) RPS20 (ENSSCUG00000007402) ENSSCUG00000007405 LYN (ENSSCUG00000007407) TGS1 (ENSSCUG00000007409) ENSSCUG00000007410 ENSSCUG00000007412 RP1 (ENSSCUG00000007418) MRPL15 (ENSSCUG00000007421) LYPLA1 (ENSSCUG00000007422) TCEA1 (ENSSCUG00000007423) RGS20 (ENSSCUG00000007426) ATP6V1H (ENSSCUG00000007428) OPRK1 (ENSSCUG00000007430) NPBWR1 (ENSSCUG00000007431) RB1CC1 (ENSSCUG00000007433) #22 Australian saltwater crocodile MODERN SPECIES ENSCPRG00005016333 LYN (ENSCPRG00005016330) TGS1 (ENSCPRG00005016323) ENSCPRG00005016312 ENSCPRG00005016293 XKR4 (ENSCPRG00005016282) ENSCPRG00005016245 MRPL15 (ENSCPRG00005016215) LYPLA1 (ENSCPRG00005016196) TCEA1 (ENSCPRG00005016187) RGS20 (ENSCPRG00005016184) ATP6V1H (ENSCPRG00005016178) OPRK1 (ENSCPRG00005016155) ENSCPRG00005016154 NPBWR1 (ENSCPRG00005016153) RB1CC1 (ENSCPRG00005016150) #22 ALKAL1 (ENSCPRG00005016144) ST18 (ENSCPRG00005016142) #23 PCMTD1 (ENSCPRG00005016138) ##24 PXDNL (ENSCPRG00005016130) ENSCPRG00005016128 SNTG1 (ENSCPRG00005016125) #25 ENSCPRG00005016119 ENSCPRG00005016116 #26 ENSCPRG00005016112 UBE2V2 (ENSCPRG00005016092) #27 MCM4 (ENSCPRG00005016083) #28 PRKDC (ENSCPRG00005015476) ENSCPRG00005015317 #29 CEBPD (ENSCPRG00005015316) #29 SPIDR (ENSCPRG00005015312) #30 Cryptodira ANCESTRAL SPECIES 7 ENSGT00390000011782.k.a.b ENSGT00390000011782.k.a.a.c ENSGT00390000011782.l ENSGT01070000253766.A.b ENSGT00940000164647 ENSGT00940000154242.b ENSGT00940000156694 ENSGT00940000175507 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00950000183117.b ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 Testudinoidea DUPLICATION Testudinidae ANCESTRAL SPECIES 218 ENSGT00390000015871.o #22 ENSGT00940000159969.a Emydidae ANCESTRAL SPECIES ENSGT00390000015871.o #22 painted turtle MODERN SPECIES 2370 ANO4 (ENSCPBG00000004697) GAS2L3 (ENSCPBG00000004642) NR1H4 (ENSCPBG00000004615) SLC17A8 (ENSCPBG00000004579) SCYL2 (ENSCPBG00000004524) DEPDC4 (ENSCPBG00000004494) ACTR6 (ENSCPBG00000004488) BLTP3B (ENSCPBG00000004451) ENSCPBG00000004428 ANKS1B (ENSCPBG00000004377) APAF1 (ENSCPBG00000004307) IKBIP (ENSCPBG00000004281) SLC25A3 (ENSCPBG00000004261) ENSCPBG00000004210 ENSCPBG00000004178 ENSCPBG00000002444 #22 NEDD1 (ENSCPBG00000002300) CFAP54 (ENSCPBG00000002200) CDK17 (ENSCPBG00000002155) ELK3 (ENSCPBG00000002127) LTA4H (ENSCPBG00000002061) ENSCPBG00000002031 ENSCPBG00000002010 AMDHD1 (ENSCPBG00000001992) CCDC38 (ENSCPBG00000001964) ENSCPBG00000001948 NTN4 (ENSCPBG00000001912) USP44 (ENSCPBG00000001893) METAP2 (ENSCPBG00000001885) VEZT (ENSCPBG00000001837) FGD6 (ENSCPBG00000001805) Testudinoidea ANCESTRAL SPECIES ENSGT00390000011782.k.a.a.c.a ENSGT00390000011782.k.a.a.d ENSGT00390000011782.l ENSGT01070000253766.A.b ENSGT00940000164647 ENSGT00940000154242.b ENSGT00940000156694 ENSGT00940000175507 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871.p #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00740000115534.a.b #27 ENSGT00990000208485 ENSGT01050000244824.A.o.b #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00950000183117.b ENSGT00490000043329.a.a.b #31 Emydidae ANCESTRAL SPECIES ENSGT00390000011782.k.a.a.c.a ENSGT00390000011782.k.a.a.d ENSGT00390000011782.l ENSGT01070000253766.A.b ENSGT00940000164647 ENSGT00940000154242.b ENSGT00940000156694 ENSGT00940000175507 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871.p #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00740000115534.a.b #27 ENSGT00990000208485 ENSGT01050000244824.A.o.b #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00950000183117.b ENSGT00490000043329.a.a.b #31 Three-toed box turtle MODERN SPECIES 24 ENSTMTG00000013870 ENSTMTG00000013813 ENSTMTG00000013784 ENSTMTG00000013705 ENSTMTG00000013682 XKR4 (ENSTMTG00000013667) RP1 (ENSTMTG00000013533) ENSTMTG00000013517 MRPL15 (ENSTMTG00000013499) LYPLA1 (ENSTMTG00000013477) TCEA1 (ENSTMTG00000013459) ENSTMTG00000013452 ATP6V1H (ENSTMTG00000013418) OPRK1 (ENSTMTG00000013409) NPBWR1 (ENSTMTG00000013404) RB1CC1 (ENSTMTG00000013284) #22 ALKAL1 (ENSTMTG00000013247) ENSTMTG00000013188 #23 PCMTD1 (ENSTMTG00000013176) ##24 PXDNL (ENSTMTG00000013000) ENSTMTG00000012975 SNTG1 (ENSTMTG00000012919) #25 PPDPFL (ENSTMTG00000012894) SNAI2 (ENSTMTG00000012879) UBE2V2 (ENSTMTG00000012869) #27 ENSTMTG00000012856 MCM4 (ENSTMTG00000012841) #28 PRKDC (ENSTMTG00000005625) CEBPD (ENSTMTG00000005098) #29 ENSTMTG00000005084 #29 SPIDR (ENSTMTG00000005035) #30 Goode s thornscrub tortoise DUPLICATION Abingdon island giant tortoise MODERN SPECIES 2767 CXCR3 (ENSCABG00000021004) ENSCABG00000021001 ENSCABG00000020999 ENSCABG00000020994 ENSCABG00000020882 APOE (ENSCABG00000020865) ENSCABG00000020864 TOMM40 (ENSCABG00000020863) NECTIN2 (ENSCABG00000020862) ENSCABG00000020859 ENSCABG00000020801 #22 Mammalia ANCESTRAL SPECIES 3 ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000164647 ENSGT00940000154242.b ENSGT00940000156694 ENSGT00940000175507 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00740000115534.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00940000164631 ENSGT00490000043329.a.a.b #31 ENSGT00940000153897.a #32 Marsupialia ANCESTRAL SPECIES 1 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694.rb ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.e.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00940000164631 ENSGT00490000043329.a.a.b #31 Common wonbat DUPLICATION Common wonbat MODERN SPECIES 1048 ENSVURG00010006465 ENSVURG00010006301 ENSVURG00010006275 ENSVURG00010006098 ENSVURG00010006034 ENSVURG00010005956 ENSVURG00010005920 ENSVURG00010005916 ENSVURG00010005902 ENSVURG00010005886 ENSVURG00010005848 ENSVURG00010005809 ENSVURG00010005778 ENSVURG00010005677 ENSVURG00010005668 ENSVURG00010005639 #22 ENSVURG00010005623 ENSVURG00010005584 #23 ENSVURG00010005504 ##24 ENSVURG00010005493 ENSVURG00010005439 ENSVURG00010005347 ENSVURG00010005253 #25 ENSVURG00010005188 ENSVURG00010005168 ENSVURG00010005149 ENSVURG00010005099 ENSVURG00010005061 #27 ENSVURG00010004991 #28 ENSVURG00010004818 ENSVURG00010004780 #29 koala MODERN SPECIES 110 LYN (ENSPCIG00000016237) TGS1 (ENSPCIG00000016232) TMEM68 (ENSPCIG00000016228) ENSPCIG00000011774 ENSPCIG00000011781 ENSPCIG00000011782 ENSPCIG00000024928 MRPL15 (ENSPCIG00000011783) LYPLA1 (ENSPCIG00000011784) ENSPCIG00000011786 ENSPCIG00000011787 ATP6V1H (ENSPCIG00000011788) OPRK1 (ENSPCIG00000011789) NPBWR1 (ENSPCIG00000016798) ENSPCIG00000030880 RB1CC1 (ENSPCIG00000029159) #22 ENSPCIG00000029158 Tasmanian devil MODERN SPECIES LYN (ENSSHAG00000011662) TGS1 (ENSSHAG00000012878) TMEM68 (ENSSHAG00000030996) XKR4 (ENSSHAG00000024606) ENSSHAG00000009787 ENSSHAG00000011351 ENSSHAG00000027123 MRPL15 (ENSSHAG00000013435) LYPLA1 (ENSSHAG00000027960) ENSSHAG00000025222 ENSSHAG00000023280 ENSSHAG00000026155 ATP6V1H (ENSSHAG00000014375) OPRK1 (ENSSHAG00000032283) NPBWR1 (ENSSHAG00000006572) RB1CC1 (ENSSHAG00000008684) #22 ENSSHAG00000009637 ST18 (ENSSHAG00000012193) #23 PCMTD1 (ENSSHAG00000013694) ##24 PXDNL (ENSSHAG00000013921) SNTG1 (ENSSHAG00000025442) #25 SNAI2 (ENSSHAG00000024855) CLXN (ENSSHAG00000008074) UBE2V2 (ENSSHAG00000026035) #27 MCM4 (ENSSHAG00000017379) #28 PRKDC (ENSSHAG00000014031) CEBPD (ENSSHAG00000024250) #29 ENSSHAG00000014697 #30 ENSSHAG00000007134 ENSSHAG00000007986 ENSSHAG00000029531 #31 Eutheria ANCESTRAL SPECIES 15 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000164647 ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00940000164631 Atlantogenata ANCESTRAL SPECIES 20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 Xenarthra ANCESTRAL SPECIES 309 ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 Armadillo MODERN SPECIES 4058 ENSDNOG00000047002 ENSDNOG00000002743 ENSDNOG00000032973 ENSDNOG00000014959 MRPL15 (ENSDNOG00000048750) ENSDNOG00000041905 TCEA1 (ENSDNOG00000035288) RGS20 (ENSDNOG00000038623) ATP6V1H (ENSDNOG00000018864) OPRK1 (ENSDNOG00000019938) NPBWR1 (ENSDNOG00000003135) RB1CC1 (ENSDNOG00000041611) #22 ALKAL1 (ENSDNOG00000016749) ST18 (ENSDNOG00000009682) #23 PCMTD1 (ENSDNOG00000011826) ##24 Sloth MODERN SPECIES 1390 RB1CC1 (ENSCHOG00000008520) #22 Tenrec MODERN SPECIES 1312 ENSETEG00000014600 #22 Primates ANCESTRAL SPECIES 20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00940000164631 Simiiformes ANCESTRAL SPECIES 20 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00390000015600.c.a.e ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00520000055567.a.a.a.e.b Catarrhini ANCESTRAL SPECIES 15 ENSGT01070000253766.A.b ENSGT00940000155263.v ENSGT00940000164647 ENSGT00940000154242.b ENSGT00390000015600.c.a.e ENSGT00940000156694 ENSGT00440000038159.o.b ENSGT00390000009040 ENSGT00940000154185.l.a.a ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000154351.k.b.a.b.b ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00940000153241.A.l.a ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00520000055567.a.a.a.e.b Homo/Pan/Gorilla group ANCESTRAL SPECIES 13 ENSGT01070000253766.A.b ENSGT00940000155263.v ENSGT00940000154242.b ENSGT00390000015600.c.a.f.c.b ENSGT00940000156694 ENSGT00440000038159.o.b ENSGT00390000009040 ENSGT00940000154185.l.a.a ENSGT00940000154185.l.a.b.a ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000154351.k.b.a.b.b ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00940000153241.A.l.a ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00520000055567.a.a.a.e.b Pan ANCESTRAL SPECIES 11 ENSGT00390000011782 ENSGT00940000155263.v ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00390000015600.c.a.f.c.b ENSGT00940000156694 ENSGT00440000038159.o.b ENSGT00390000009040 ENSGT00940000159076.v.b ENSGT00940000154185.l.a.b.a ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00390000009405.b.d ENSGT00950000182863.B.a #25 ENSGT00940000153241.A.l.a ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00910000148642 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 Bonobo MODERN SPECIES 21 TGS1 (ENSPPAG00000039058) TMEM68 (ENSPPAG00000036306) ENSPPAG00000040800 XKR4 (ENSPPAG00000036029) RP1 (ENSPPAG00000036902) ENSPPAG00000037225 SOX17 (ENSPPAG00000001324) MRPL15 (ENSPPAG00000034223) ENSPPAG00000031297 ENSPPAG00000038171 TCEA1 (ENSPPAG00000007248) RGS20 (ENSPPAG00000033679) ATP6V1H (ENSPPAG00000038229) OPRK1 (ENSPPAG00000028202) NPBWR1 (ENSPPAG00000033096) RB1CC1 (ENSPPAG00000040017) #22 ALKAL1 (ENSPPAG00000040265) ST18 (ENSPPAG00000035808) #23 PCMTD1 (ENSPPAG00000008533) ##24 PXDNL (ENSPPAG00000034627) ENSPPAG00000041697 SNTG1 (ENSPPAG00000038256) #25 ENSPPAG00000041874 PPDPFL (ENSPPAG00000033324) SNAI2 (ENSPPAG00000015662) CLXN (ENSPPAG00000034023) ENSPPAG00000032696 ENSPPAG00000043391 #27 MCM4 (ENSPPAG00000031535) #28 PRKDC (ENSPPAG00000029994) ENSPPAG00000030119 Chimpanzee MODERN SPECIES 21 TMEM68 (ENSPTRG00000020261) ENSPTRG00000047768 XKR4 (ENSPTRG00000020257) RP1 (ENSPTRG00000020256) SOX17 (ENSPTRG00000020254) ENSPTRG00000044364 MRPL15 (ENSPTRG00000020253) ENSPTRG00000052864 LYPLA1 (ENSPTRG00000043681) TCEA1 (ENSPTRG00000020251) RGS20 (ENSPTRG00000020250) ATP6V1H (ENSPTRG00000020249) ENSPTRG00000051579 OPRK1 (ENSPTRG00000038846) NPBWR1 (ENSPTRG00000031000) RB1CC1 (ENSPTRG00000020246) #22 ALKAL1 (ENSPTRG00000024172) ST18 (ENSPTRG00000020245) #23 PCMTD1 (ENSPTRG00000020242) ##24 PXDNL (ENSPTRG00000020241) ENSPTRG00000043204 SNTG1 (ENSPTRG00000020240) #25 ENSPTRG00000048958 ENSPTRG00000041948 PPDPFL (ENSPTRG00000020236) SNAI2 (ENSPTRG00000020235) CLXN (ENSPTRG00000020233) ENSPTRG00000043711 ENSPTRG00000043470 UBE2V2 (ENSPTRG00000048563) #27 MCM4 (ENSPTRG00000020230) #28 Human MODERN SPECIES 20 MOS (ENSG00000172680) RPS20 (ENSG00000008988) LYN (ENSG00000254087) TGS1 (ENSG00000137574) TMEM68 (ENSG00000167904) XKR4 (ENSG00000206579) RP1 (ENSG00000104237) SOX17 (ENSG00000164736) MRPL15 (ENSG00000137547) LYPLA1 (ENSG00000120992) TCEA1 (ENSG00000187735) RGS20 (ENSG00000147509) ATP6V1H (ENSG00000047249) OPRK1 (ENSG00000082556) NPBWR1 (ENSG00000288611) RB1CC1 (ENSG00000023287) #22 ALKAL1 (ENSG00000196711) ST18 (ENSG00000147488) #23 PCMTD1 (ENSG00000168300) ##24 PXDNL (ENSG00000147485) SNTG1 (ENSG00000147481) #25 PPDPFL (ENSG00000168333) SNAI2 (ENSG00000019549) CLXN (ENSG00000034239) UBE2V2 (ENSG00000169139) #27 MCM4 (ENSG00000104738) #28 PRKDC (ENSG00000253729) CEBPD (ENSG00000221869) #29 SPIDR (ENSG00000164808) #30 POTEA (ENSG00000188877) HGSNAT (ENSG00000165102) Gorilla MODERN SPECIES 21 TMEM68 (ENSGGOG00000005948) ENSGGOG00000025035 ENSGGOG00000039865 RP1 (ENSGGOG00000012280) ENSGGOG00000024314 ENSGGOG00000023175 ENSGGOG00000039556 MRPL15 (ENSGGOG00000010403) ENSGGOG00000028339 TCEA1 (ENSGGOG00000023652) RGS20 (ENSGGOG00000001386) ATP6V1H (ENSGGOG00000000515) ENSGGOG00000043511 OPRK1 (ENSGGOG00000000682) NPBWR1 (ENSGGOG00000015243) RB1CC1 (ENSGGOG00000028523) #22 ALKAL1 (ENSGGOG00000002382) ST18 (ENSGGOG00000001223) #23 PCMTD1 (ENSGGOG00000025636) ##24 PXDNL (ENSGGOG00000014572) SNTG1 (ENSGGOG00000004595) #25 ENSGGOG00000037165 PPDPFL (ENSGGOG00000005946) SNAI2 (ENSGGOG00000000959) CLXN (ENSGGOG00000015381) UBE2V2 (ENSGGOG00000037904) #27 MCM4 (ENSGGOG00000006080) #28 PRKDC (ENSGGOG00000006036) CEBPD (ENSGGOG00000008077) #29 SPIDR (ENSGGOG00000007599) #30 ENSGGOG00000042073 Orangutan MODERN SPECIES 21 LYN (ENSPPYG00000018598) TGS1 (ENSPPYG00000018597) TMEM68 (ENSPPYG00000018596) XKR4 (ENSPPYG00000018595) RP1 (ENSPPYG00000018594) ENSPPYG00000035124 SOX17 (ENSPPYG00000018593) ENSPPYG00000018592 MRPL15 (ENSPPYG00000018591) LYPLA1 (ENSPPYG00000018589) RGS20 (ENSPPYG00000018588) ATP6V1H (ENSPPYG00000018587) OPRK1 (ENSPPYG00000018586) NPBWR1 (ENSPPYG00000018585) ENSPPYG00000030694 RB1CC1 (ENSPPYG00000018584) #22 ALKAL1 (ENSPPYG00000018583) ST18 (ENSPPYG00000034718) #23 PCMTD1 (ENSPPYG00000041146) ##24 PXDNL (ENSPPYG00000018581) SNTG1 (ENSPPYG00000018580) #25 PPDPFL (ENSPPYG00000018579) SNAI2 (ENSPPYG00000018578) CLXN (ENSPPYG00000018577) UBE2V2 (ENSPPYG00000018575) #27 MCM4 (ENSPPYG00000018574) #28 PRKDC (ENSPPYG00000018573) CEBPD (ENSPPYG00000018572) #29 SPIDR (ENSPPYG00000018571) #30 ENSPPYG00000038516 ENSPPYG00000041060 Gibbon MODERN SPECIES 6 ENSNLEG00000001213 LYN (ENSNLEG00000001140) TGS1 (ENSNLEG00000001101) TMEM68 (ENSNLEG00000001094) ENSNLEG00000001093 ENSNLEG00000001087 ENSNLEG00000032778 SOX17 (ENSNLEG00000001085) MRPL15 (ENSNLEG00000029566) LYPLA1 (ENSNLEG00000001027) TCEA1 (ENSNLEG00000000981) RGS20 (ENSNLEG00000000956) ATP6V1H (ENSNLEG00000000870) OPRK1 (ENSNLEG00000033253) NPBWR1 (ENSNLEG00000018388) RB1CC1 (ENSNLEG00000000777) #22 ALKAL1 (ENSNLEG00000000759) ST18 (ENSNLEG00000000678) #23 PCMTD1 (ENSNLEG00000000661) ##24 PXDNL (ENSNLEG00000000611) SNTG1 (ENSNLEG00000000578) #25 ENSNLEG00000029558 PPDPFL (ENSNLEG00000028865) SNAI2 (ENSNLEG00000013421) CLXN (ENSNLEG00000013405) ENSNLEG00000019352 ENSNLEG00000036004 #27 MCM4 (ENSNLEG00000013314) #28 PRKDC (ENSNLEG00000013252) ENSNLEG00000035046 SPIDR (ENSNLEG00000013158) #30 Cercopithecidae ANCESTRAL SPECIES 14 ENSGT01070000253766.A.b ENSGT00940000155263.v ENSGT00940000164647 ENSGT00940000154242.b ENSGT00390000015600.c.a.e ENSGT00940000156694 ENSGT00440000038159.o.b ENSGT00390000009040 ENSGT00940000154185.l.a.a ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000154351.k.b.a.b.b ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.b #27 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00520000055567.a.a.a.e.b Cercopithecinae ANCESTRAL SPECIES 16 ENSGT01070000253766.A.b ENSGT00940000155263.v ENSGT00940000164647 ENSGT00940000154242.b ENSGT00390000015600.c.a.e ENSGT00940000156694 ENSGT00440000038159.o.b ENSGT00390000009040 ENSGT00940000154185.l.a.a.a ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000154351.k.b.a.b.b ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.b #27 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00520000055567.a.a.a.e.b Cercopithecinae_a ANCESTRAL SPECIES 15 ENSGT00940000154242.b ENSGT00390000015600.c.a.e ENSGT00940000156694 ENSGT00440000038159.o.b ENSGT00390000009040 ENSGT00940000154185.l.a.a.a ENSGT00940000155121 ENSGT00390000004881.z ENSGT00940000159123 ENSGT00910000147783 ENSGT00390000003289 ENSGT00940000154351.k.b.a.b.b ENSGT00940000157341 ENSGT00390000001347.vb.a.b.b.b ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00520000055567.a.a.a.e.b ENSGT00940000156298.t Macaca ANCESTRAL SPECIES 14 ENSGT01070000253766.A.b ENSGT00940000155263.v ENSGT00940000154242.b ENSGT00390000015600.c.a.e ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185.l.a.a.a ENSGT00940000155121 ENSGT00390000004881.z ENSGT00940000159123 ENSGT00910000147783 ENSGT00390000003289 ENSGT00940000157341 ENSGT00390000001347.vb.a.b.b.b ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00910000147160 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00520000055567.a.a.a.e.b Macaca_a ANCESTRAL SPECIES 16 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00390000015600.c.a.e ENSGT00940000156694 ENSGT01040000240559.a.a.b ENSGT00390000009040 ENSGT00940000154185.l.a.a.a ENSGT00940000155121 ENSGT00940000159123 ENSGT00910000147783 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000167556.b.b.a.b.a.a.a.b.b.b.b.b.a.a.a.b.b.b.a.b.b.a ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00910000147160 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00390000014654 #30 ENSGT00940000156298.t ENSGT00390000001491.a Rhesus MODERN SPECIES 18 XKR4 (ENSMMUG00000003733) RP1 (ENSMMUG00000014640) ENSMMUG00000000082 SOX17 (ENSMMUG00000063192) ENSMMUG00000051150 MRPL15 (ENSMMUG00000005539) LYPLA1 (ENSMMUG00000013157) TCEA1 (ENSMMUG00000016022) RGS20 (ENSMMUG00000015417) ATP6V1H (ENSMMUG00000004064) ENSMMUG00000063928 OPRK1 (ENSMMUG00000065247) ENSMMUG00000062566 NPBWR1 (ENSMMUG00000020909) ENSMMUG00000057267 RB1CC1 (ENSMMUG00000009990) #22 ALKAL1 (ENSMMUG00000042459) ST18 (ENSMMUG00000008439) #23 PCMTD1 (ENSMMUG00000003347) ##24 PXDNL (ENSMMUG00000002781) ENSMMUG00000060991 SNTG1 (ENSMMUG00000002811) #25 ENSMMUG00000047485 ENSMMUG00000057165 PPDPFL (ENSMMUG00000057040) SNAI2 (ENSMMUG00000016195) CLXN (ENSMMUG00000053238) ENSMMUG00000059736 UBE2V2 (ENSMMUG00000008223) #27 MCM4 (ENSMMUG00000015360) #28 PRKDC (ENSMMUG00000015347) Crab-eating macaque MODERN SPECIES 18 TGS1 (ENSMFAG00000029838) TMEM68 (ENSMFAG00000019904) XKR4 (ENSMFAG00000039071) RP1 (ENSMFAG00000038067) SOX17 (ENSMFAG00000056293) ENSMFAG00000062730 ENSMFAG00000064062 MRPL15 (ENSMFAG00000000491) ENSMFAG00000057104 TCEA1 (ENSMFAG00000041675) RGS20 (ENSMFAG00000031333) ENSMFAG00000064802 ATP6V1H (ENSMFAG00000032985) OPRK1 (ENSMFAG00000041857) ENSMFAG00000052865 RB1CC1 (ENSMFAG00000001661) #22 ALKAL1 (ENSMFAG00000044072) ENSMFAG00000033133 ST18 (ENSMFAG00000000316) #23 PCMTD1 (ENSMFAG00000005557) ##24 PXDNL (ENSMFAG00000037176) SNTG1 (ENSMFAG00000034236) #25 ENSMFAG00000059129 ENSMFAG00000049535 PPDPFL (ENSMFAG00000044803) ENSMFAG00000050827 SNAI2 (ENSMFAG00000065685) ENSMFAG00000048515 CLXN (ENSMFAG00000044408) UBE2V2 (ENSMFAG00000030364) #27 MCM4 (ENSMFAG00000035531) #28 Pig-tailed macaque MODERN SPECIES 305 OPRK1 (ENSMNEG00000042852) ENSMNEG00000022043 ENSMNEG00000043554 NPBWR1 (ENSMNEG00000005589) RB1CC1 (ENSMNEG00000031596) #22 ALKAL1 (ENSMNEG00000019421) ST18 (ENSMNEG00000028872) #23 PCMTD1 (ENSMNEG00000035425) ##24 Cercopithecinae_b ANCESTRAL SPECIES 9 ENSGT00940000154242.b ENSGT00390000015600.c.a.e ENSGT00940000156694 ENSGT00440000038159.o.b ENSGT00390000009040 ENSGT00940000154185.l.a.a.a ENSGT00940000155121 ENSGT00390000004881.z ENSGT00940000159123 ENSGT00910000147783 ENSGT00390000003289 ENSGT00940000154351.k.b.a.b.b ENSGT00940000157341 ENSGT00390000001347.vb.a.b.b.b ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00520000055567.a.a.a.e.b ENSGT00940000156298.t Cercopithecinae_d ANCESTRAL SPECIES 31 ENSGT00390000015600.c.a.e ENSGT00940000156694 ENSGT00440000038159.o.b ENSGT00390000009040 ENSGT00940000154185.l.a.a.a ENSGT00940000155121 ENSGT00390000004881.z ENSGT00940000159123 ENSGT00910000147783 ENSGT00390000003289 ENSGT00940000154351.k.b.a.b.b ENSGT00940000157341 ENSGT00950000183029.B.c.b.b.b.u.a ENSGT00390000001347.vb.a.b.b.b ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 Drill MODERN SPECIES 1145 ENSMLEG00000033690 ENSMLEG00000043551 RB1CC1 (ENSMLEG00000031840) #22 ALKAL1 (ENSMLEG00000036152) ST18 (ENSMLEG00000038764) #23 PCMTD1 (ENSMLEG00000027519) ##24 PXDNL (ENSMLEG00000040611) Sooty mangabey MODERN SPECIES 184 XKR4 (ENSCATG00000035909) RP1 (ENSCATG00000036262) ENSCATG00000032680 ENSCATG00000033814 SOX17 (ENSCATG00000032966) MRPL15 (ENSCATG00000029666) LYPLA1 (ENSCATG00000007446) TCEA1 (ENSCATG00000039602) ENSCATG00000029701 RGS20 (ENSCATG00000035536) ATP6V1H (ENSCATG00000036357) OPRK1 (ENSCATG00000037584) ENSCATG00000029226 ENSCATG00000028185 NPBWR1 (ENSCATG00000017400) RB1CC1 (ENSCATG00000031086) #22 ALKAL1 (ENSCATG00000036184) ST18 (ENSCATG00000032688) #23 PCMTD1 (ENSCATG00000034883) ##24 PXDNL (ENSCATG00000012510) Olive baboon MODERN SPECIES 18 TGS1 (ENSPANG00000018910) TMEM68 (ENSPANG00000009706) XKR4 (ENSPANG00000034384) RP1 (ENSPANG00000005975) ENSPANG00000030917 SOX17 (ENSPANG00000044610) ENSPANG00000049863 ENSPANG00000015007 ENSPANG00000009673 TCEA1 (ENSPANG00000018453) RGS20 (ENSPANG00000017181) ATP6V1H (ENSPANG00000015126) ENSPANG00000032914 OPRK1 (ENSPANG00000009674) ENSPANG00000041605 RB1CC1 (ENSPANG00000020227) #22 ENSPANG00000045412 ALKAL1 (ENSPANG00000015221) ENSPANG00000040573 ST18 (ENSPANG00000009233) #23 ENSPANG00000042832 ENSPANG00000044009 PCMTD1 (ENSPANG00000013158) ##24 ENSPANG00000046588 PXDNL (ENSPANG00000015687) SNTG1 (ENSPANG00000017058) #25 PPDPFL (ENSPANG00000017056) SNAI2 (ENSPANG00000017540) CLXN (ENSPANG00000007207) ENSPANG00000044905 ENSPANG00000043805 Vervet Monkey MODERN SPECIES 27 RPS20 (ENSCSAG00000014597) LYN (ENSCSAG00000014603) TGS1 (ENSCSAG00000014611) TMEM68 (ENSCSAG00000014625) ENSCSAG00000014632 ENSCSAG00000014645 RP1 (ENSCSAG00000014654) SOX17 (ENSCSAG00000014667) ENSCSAG00000018544 MRPL15 (ENSCSAG00000014671) TCEA1 (ENSCSAG00000014680) RGS20 (ENSCSAG00000014690) ATP6V1H (ENSCSAG00000014698) OPRK1 (ENSCSAG00000014703) NPBWR1 (ENSCSAG00000018542) RB1CC1 (ENSCSAG00000014715) #22 ALKAL1 (ENSCSAG00000014724) ST18 (ENSCSAG00000014731) #23 PCMTD1 (ENSCSAG00000014740) ##24 ENSCSAG00000018539 PXDNL (ENSCSAG00000014768) SNTG1 (ENSCSAG00000014777) #25 PPDPFL (ENSCSAG00000014783) SNAI2 (ENSCSAG00000014787) CLXN (ENSCSAG00000014792) ENSCSAG00000014799 #27 MCM4 (ENSCSAG00000014816) #28 PRKDC (ENSCSAG00000014860) SPIDR (ENSCSAG00000014882) #30 HGSNAT (ENSCSAG00000014893) POMK (ENSCSAG00000014900) Rhinopithecus ANCESTRAL SPECIES 580 ENSGT00390000001347.vb.a.b.b.b ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 Black snub-nosed monkey MODERN SPECIES 237 ENSRBIG00000044536 NPBWR1 (ENSRBIG00000023317) RB1CC1 (ENSRBIG00000035856) #22 ALKAL1 (ENSRBIG00000032933) Golden snub-nosed monkey MODERN SPECIES 1448 ENSRROG00000045734 NPBWR1 (ENSRROG00000027603) RB1CC1 (ENSRROG00000037308) #22 ALKAL1 (ENSRROG00000040005) ST18 (ENSRROG00000028859) #23 PCMTD1 (ENSRROG00000033921) ##24 PXDNL (ENSRROG00000010031) Platyrrhini ANCESTRAL SPECIES 17 ENSGT00390000003248.a.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00390000015600.c.a.e ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185.m ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00550000074939.m.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00520000055567.a.a.a.e.b Cebidae ANCESTRAL SPECIES 19 ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00390000009040.l ENSGT00390000015600.c.a.e ENSGT00940000156694 ENSGT00390000009040.k.a ENSGT00940000154185.m ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00550000074939.m.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 Marmoset MODERN SPECIES 7 ENSCJAG00000058676 ENSCJAG00000073453 ENSCJAG00000073368 ENSCJAG00000023103 ENSCJAG00000083559 ENSCJAG00000065730 TCEA1 (ENSCJAG00000014407) RGS20 (ENSCJAG00000014461) ATP6V1H (ENSCJAG00000014482) ENSCJAG00000070159 ENSCJAG00000080651 ENSCJAG00000078097 OPRK1 (ENSCJAG00000048611) ENSCJAG00000083591 ENSCJAG00000077834 RB1CC1 (ENSCJAG00000014530) #22 ALKAL1 (ENSCJAG00000075812) ST18 (ENSCJAG00000014630) #23 ENSCJAG00000083253 PCMTD1 (ENSCJAG00000080020) ##24 PXDNL (ENSCJAG00000014675) ENSCJAG00000074431 ENSCJAG00000074905 ENSCJAG00000082175 ENSCJAG00000077462 SNTG1 (ENSCJAG00000015678) #25 ENSCJAG00000081477 ENSCJAG00000052976 ENSCJAG00000078309 ENSCJAG00000081013 ENSCJAG00000081476 Cebidae_a ANCESTRAL SPECIES 54 ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00390000009040.l ENSGT00390000015600.c.a.e ENSGT00940000156694 ENSGT00390000009040.k.a ENSGT00940000154185.m ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00550000074939.m.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 Bolivian squirrel monkey MODERN SPECIES 178 TCEA1 (ENSSBOG00000033155) RGS20 (ENSSBOG00000021303) ATP6V1H (ENSSBOG00000030103) ENSSBOG00000025887 OPRK1 (ENSSBOG00000027337) NPBWR1 (ENSSBOG00000014546) RB1CC1 (ENSSBOG00000023965) #22 ALKAL1 (ENSSBOG00000022434) ST18 (ENSSBOG00000023667) #23 PCMTD1 (ENSSBOG00000014686) ##24 PXDNL (ENSSBOG00000027067) SNTG1 (ENSSBOG00000020909) #25 PPDPFL (ENSSBOG00000031825) SNAI2 (ENSSBOG00000035774) CLXN (ENSSBOG00000031612) ENSSBOG00000029529 #27 MCM4 (ENSSBOG00000020974) #28 PRKDC (ENSSBOG00000032387) SPIDR (ENSSBOG00000029698) #30 Capuchin MODERN SPECIES 73 TMEM68 (ENSCCAG00000037608) XKR4 (ENSCCAG00000032075) RP1 (ENSCCAG00000030036) ENSCCAG00000030682 SOX17 (ENSCCAG00000034190) ENSCCAG00000032567 ENSCCAG00000018866 ENSCCAG00000000796 ENSCCAG00000036893 ENSCCAG00000023731 TCEA1 (ENSCCAG00000018619) RGS20 (ENSCCAG00000029095) ATP6V1H (ENSCCAG00000027346) ENSCCAG00000028173 OPRK1 (ENSCCAG00000033049) RB1CC1 (ENSCCAG00000022175) #22 ALKAL1 (ENSCCAG00000036085) ENSCCAG00000034664 ST18 (ENSCCAG00000022063) #23 PCMTD1 (ENSCCAG00000026243) ##24 ENSCCAG00000031107 ENSCCAG00000035295 PXDNL (ENSCCAG00000025900) SNTG1 (ENSCCAG00000025501) #25 ENSCCAG00000021374 PPDPFL (ENSCCAG00000027219) SNAI2 (ENSCCAG00000024100) EFCAB1 (ENSCCAG00000018583) Mas night monkey MODERN SPECIES 657 MRPL15 (ENSANAG00000031982) ENSANAG00000035611 ENSANAG00000002590 RGS20 (ENSANAG00000034281) ATP6V1H (ENSANAG00000012840) ENSANAG00000035847 OPRK1 (ENSANAG00000033012) NPBWR1 (ENSANAG00000004911) ENSANAG00000022735 RB1CC1 (ENSANAG00000029285) #22 ALKAL1 (ENSANAG00000030352) ENSANAG00000031552 ST18 (ENSANAG00000030299) #23 PCMTD1 (ENSANAG00000003477) ##24 ENSANAG00000024030 PXDNL (ENSANAG00000025434) SNTG1 (ENSANAG00000024114) #25 PPDPFL (ENSANAG00000022280) SNAI2 (ENSANAG00000021163) CLXN (ENSANAG00000032509) ENSANAG00000027457 ENSANAG00000024543 #27 MCM4 (ENSANAG00000026411) #28 PRKDC (ENSANAG00000028345) CEBPD (ENSANAG00000022717) #29 Tarsier MODERN SPECIES 5883 ENSTSYG00000033963 ENSTSYG00000011793 RB1CC1 (ENSTSYG00000003016) #22 Strepsirrhini ANCESTRAL SPECIES 15 ENSGT00390000003248.a.a.a.a.b ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.b #27 ENSGT00740000115534.a.b.f.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00940000164631 Lemuriformes ANCESTRAL SPECIES 24 ENSGT00940000159246 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00940000164631 Mouse lemur MODERN SPECIES 31 ENSMICG00000031576 XKR4 (ENSMICG00000004668) TMEM68 (ENSMICG00000011190) TGS1 (ENSMICG00000011199) LYN (ENSMICG00000031282) RPS20 (ENSMICG00000034860) PLAG1 (ENSMICG00000047968) CHCHD7 (ENSMICG00000007022) SDR16C5 (ENSMICG00000011717) PENK (ENSMICG00000041439) BPNT2 (ENSMICG00000028623) ENSMICG00000027477 FAM110B (ENSMICG00000041645) UBXN2B (ENSMICG00000028037) CYP7A1 (ENSMICG00000030668) RB1CC1 (ENSMICG00000000604) #22 ALKAL1 (ENSMICG00000046052) ST18 (ENSMICG00000003705) #23 PCMTD1 (ENSMICG00000003704) ##24 ENSMICG00000045521 SNTG1 (ENSMICG00000001818) #25 PPDPFL (ENSMICG00000045092) ENSMICG00000000335 #26 CLXN (ENSMICG00000006465) ENSMICG00000009824 #27 MCM4 (ENSMICG00000015638) #28 PRKDC (ENSMICG00000015567) ENSMICG00000015552 #30 ENSMICG00000042808 Lemuriformes_a ANCESTRAL SPECIES 107 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00940000164631 ENSGT00940000154185 ENSGT00390000009040 Greater bamboo lemur MODERN SPECIES 304 TCEA1 (ENSPSMG00000014580) ENSPSMG00000014480 RGS20 (ENSPSMG00000014458) ATP6V1H (ENSPSMG00000014394) ENSPSMG00000014329 OPRK1 (ENSPSMG00000014319) NPBWR1 (ENSPSMG00000014303) ENSPSMG00000014298 RB1CC1 (ENSPSMG00000014088) #22 ALKAL1 (ENSPSMG00000013919) ST18 (ENSPSMG00000013895) #23 ENSPSMG00000013850 PCMTD1 (ENSPSMG00000013847) ##24 Coquerels sifaka MODERN SPECIES 853 TCEA1 (ENSPCOG00000021601) RGS20 (ENSPCOG00000021873) ENSPCOG00000021440 ATP6V1H (ENSPCOG00000013848) OPRK1 (ENSPCOG00000015547) RB1CC1 (ENSPCOG00000013427) #22 ALKAL1 (ENSPCOG00000023221) ST18 (ENSPCOG00000007929) #23 PCMTD1 (ENSPCOG00000021881) ##24 ENSPCOG00000008759 SNTG1 (ENSPCOG00000021495) #25 PPDPFL (ENSPCOG00000009682) SNAI2 (ENSPCOG00000015656) CLXN (ENSPCOG00000013982) ENSPCOG00000025231 #27 MCM4 (ENSPCOG00000014586) #28 PRKDC (ENSPCOG00000014140) ENSPCOG00000024411 ENSPCOG00000024613 #30 ENSPCOG00000025760 LYPLA1 (ENSPCOG00000021102) Bushbaby MODERN SPECIES 186 ENSOGAG00000028638 TGS1 (ENSOGAG00000012572) TMEM68 (ENSOGAG00000015631) XKR4 (ENSOGAG00000002186) ENSOGAG00000033038 ENSOGAG00000030025 SOX17 (ENSOGAG00000034932) ENSOGAG00000031239 MRPL15 (ENSOGAG00000003768) LYPLA1 (ENSOGAG00000003767) TCEA1 (ENSOGAG00000029746) ENSOGAG00000028530 ATP6V1H (ENSOGAG00000008887) OPRK1 (ENSOGAG00000016684) NPBWR1 (ENSOGAG00000029754) RB1CC1 (ENSOGAG00000016597) #22 ST18 (ENSOGAG00000012050) #23 PCMTD1 (ENSOGAG00000024368) ##24 SNTG1 (ENSOGAG00000000619) #25 Euarchontoglires_A ANCESTRAL SPECIES 19 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000164647 ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 Tree shrew MODERN SPECIES 523 RB1CC1 (ENSTBEG00000013827) #22 Glires ANCESTRAL SPECIES 20 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000164647 ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 Rodentia ANCESTRAL SPECIES 19 ENSGT00390000003248.a.a.a.b.db ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000164647 ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 Rodentia_A ANCESTRAL SPECIES 18 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.cb.a.a ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 Sciuridae ANCESTRAL SPECIES 17 ENSGT00390000003248.a.a.a.b.db ENSGT00390000003248.a.a.a.b.cb.a.a ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 Marmotini ANCESTRAL SPECIES 10 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.db ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00940000168767 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 Marmotini_b ANCESTRAL SPECIES 52 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.cb.a.a ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00940000168767 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 Squirrel MODERN SPECIES 190 NPBWR1 (ENSSTOG00000031799) ENSSTOG00000033788 RB1CC1 (ENSSTOG00000003037) #22 ALKAL1 (ENSSTOG00000003032) ST18 (ENSSTOG00000016500) #23 ENSSTOG00000027757 PCMTD1 (ENSSTOG00000005412) ##24 SNTG1 (ENSSTOG00000006780) #25 SNAI2 (ENSSTOG00000028743) CLXN (ENSSTOG00000005832) ENSSTOG00000033326 UBE2V2 (ENSSTOG00000021769) #27 MCM4 (ENSSTOG00000009905) #28 PRKDC (ENSSTOG00000009784) SPIDR (ENSSTOG00000010890) #30 Arctic ground squirrel MODERN SPECIES 137 TMEM68 (ENSUPAG00010002929) XKR4 (ENSUPAG00010002936) RP1 (ENSUPAG00010002942) ENSUPAG00010002961 SOX17 (ENSUPAG00010002964) MRPL15 (ENSUPAG00010002973) LYPLA1 (ENSUPAG00010002986) TCEA1 (ENSUPAG00010003008) ENSUPAG00010003023 RGS20 (ENSUPAG00010003027) ATP6V1H (ENSUPAG00010003037) OPRK1 (ENSUPAG00010003107) ENSUPAG00010003124 NPBWR1 (ENSUPAG00010003128) ENSUPAG00010003143 RB1CC1 (ENSUPAG00010003148) #22 ALKAL1 (ENSUPAG00010003181) ST18 (ENSUPAG00010003189) #23 ENSUPAG00010003296 PCMTD1 (ENSUPAG00010003305) ##24 PXDNL (ENSUPAG00010003311) Alpin marmot MODERN SPECIES 16 LYN (ENSMMMG00000001265) TGS1 (ENSMMMG00000001130) TMEM68 (ENSMMMG00000001093) RP1 (ENSMMMG00000001046) ENSMMMG00000001041 SOX17 (ENSMMMG00000001029) ENSMMMG00000001024 MRPL15 (ENSMMMG00000001003) LYPLA1 (ENSMMMG00000000994) TCEA1 (ENSMMMG00000000970) ATP6V1H (ENSMMMG00000000819) OPRK1 (ENSMMMG00000000792) ENSMMMG00000000769 ENSMMMG00000000761 NPBWR1 (ENSMMMG00000000755) RB1CC1 (ENSMMMG00000000733) #22 ALKAL1 (ENSMMMG00000000712) ST18 (ENSMMMG00000000496) #23 ENSMMMG00000000469 PCMTD1 (ENSMMMG00000000404) ##24 PXDNL (ENSMMMG00000000367) SNTG1 (ENSMMMG00000000104) #25 ENSMMMG00000000024 ENSMMMG00000000012 SNAI2 (ENSMMMG00000022198) CLXN (ENSMMMG00000022191) ENSMMMG00000022170 ENSMMMG00000022167 ENSMMMG00000022157 ENSMMMG00000022151 ENSMMMG00000022149 Eurasian red squirrel MODERN SPECIES RP1 (ENSSVLG00005009858) SOX17 (ENSSVLG00005009789) MRPL15 (ENSSVLG00005009764) ENSSVLG00005009666 ENSSVLG00005009646 TCEA1 (ENSSVLG00005009501) RGS20 (ENSSVLG00005009394) ENSSVLG00005009360 ATP6V1H (ENSSVLG00005009299) ENSSVLG00005009270 OPRK1 (ENSSVLG00005009227) ENSSVLG00005009204 ENSSVLG00005009187 NPBWR1 (ENSSVLG00005009175) ENSSVLG00005009157 RB1CC1 (ENSSVLG00005009081) #22 ALKAL1 (ENSSVLG00005009002) ENSSVLG00005008883 #23 ENSSVLG00005008837 PCMTD1 (ENSSVLG00005008801) ##24 PXDNL (ENSSVLG00005008684) SNTG1 (ENSSVLG00005007613) #25 PPDPFL (ENSSVLG00005007203) ENSSVLG00005007187 SNAI2 (ENSSVLG00005007170) ENSSVLG00005007144 CLXN (ENSSVLG00005007101) ENSSVLG00005007072 ENSSVLG00005007058 ENSSVLG00005007040 UBE2V2 (ENSSVLG00005006994) #27 Hystricomorpha DUPLICATION Hystricomorpha ANCESTRAL SPECIES ENSGT00390000015871.u #22 Hystricomorpha_a ANCESTRAL SPECIES ENSGT00390000015871.u #22 Hystricomorpha_b ANCESTRAL SPECIES ENSGT00390000015871.u #22 Degu MODERN SPECIES 95 ENSODEG00000018874 TGS1 (ENSODEG00000002948) ENSODEG00000003120 XKR4 (ENSODEG00000003156) ENSODEG00000003202 ENSODEG00000018873 ENSODEG00000002691 ENSODEG00000002737 ENSODEG00000002753 ENSODEG00000002823 ATP6V1H (ENSODEG00000002840) ENSODEG00000002936 OPRK1 (ENSODEG00000002988) NPBWR1 (ENSODEG00000019191) ENSODEG00000003047 #22 ENSODEG00000003192 #22 ENSODEG00000003208 ST18 (ENSODEG00000003288) #23 PCMTD1 (ENSODEG00000003571) ##24 SNTG1 (ENSODEG00000003621) #25 ENSODEG00000003654 #26 CLXN (ENSODEG00000003725) ENSODEG00000003745 ENSODEG00000018960 ENSODEG00000019042 ENSODEG00000004479 #27 MCM4 (ENSODEG00000004626) #28 PRKDC (ENSODEG00000004916) CEBPD (ENSODEG00000002997) #29 ENSODEG00000003011 ENSODEG00000003049 Hystricomorpha ANCESTRAL SPECIES 12 ENSGT00390000003248.a.b.b ENSGT00390000003248.a.a.a.b.cb.b.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185.cb ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871.v #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00940000155908.b ENSGT00940000161075 ENSGT00940000157478 ENSGT00940000157170 Naked mole-rat female MODERN SPECIES 1 ENSHGLG00000041788 SOX17 (ENSHGLG00000009392) MRPL15 (ENSHGLG00000038800) ENSHGLG00000015507 TCEA1 (ENSHGLG00000036590) ENSHGLG00000043019 ENSHGLG00000045461 ENSHGLG00000050091 ATP6V1H (ENSHGLG00000018810) Oprk1 (ENSHGLG00000038296) ENSHGLG00000046007 ENSHGLG00000003564 ENSHGLG00000015610 NPBWR1 (ENSHGLG00000021373) ENSHGLG00000013146 RB1CC1 (ENSHGLG00000018518) #22 ALKAL1 (ENSHGLG00000038780) ENSHGLG00000016233 ENSHGLG00000014452 #23 PCMTD1 (ENSHGLG00000045944) ##24 ENSHGLG00000045690 ENSHGLG00000048304 ENSHGLG00000044626 SNTG1 (ENSHGLG00000005037) #25 ENSHGLG00000050331 PPDPFL (ENSHGLG00000032230) ENSHGLG00000009439 #26 CLXN (ENSHGLG00000010454) ENSHGLG00000034668 ENSHGLG00000034089 UBE2V2 (ENSHGLG00000038834) #27 Hystricomorpha_a ANCESTRAL SPECIES 9 ENSGT00390000003248.a.a.a.b.cb.a.a ENSGT00390000003248.a.a.a.b.cb.b.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185.cb ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871.v #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00390000014654 #30 ENSGT00940000155908.b ENSGT00940000161075 ENSGT00940000157478 ENSGT00940000157170 ENSGT00390000010251 Guinea pig MODERN SPECIES 64 LYN (ENSCPOG00000011693) TGS1 (ENSCPOG00000009713) TMEM68 (ENSCPOG00000019826) XKR4 (ENSCPOG00000003676) ENSCPOG00000039324 SOX17 (ENSCPOG00000000892) MRPL15 (ENSCPOG00000035946) LYPLA1 (ENSCPOG00000022715) TCEA1 (ENSCPOG00000005886) ENSCPOG00000038533 ENSCPOG00000022816 ATP6V1H (ENSCPOG00000012174) ENSCPOG00000023180 OPRK1 (ENSCPOG00000006607) NPBWR1 (ENSCPOG00000019602) RB1CC1 (ENSCPOG00000020341) #22 ENSCPOG00000034718 ENSCPOG00000032897 ST18 (ENSCPOG00000005486) #23 PCMTD1 (ENSCPOG00000038704) ##24 SNTG1 (ENSCPOG00000010462) #25 ENSCPOG00000033449 #26 CLXN (ENSCPOG00000003325) UBE2V2 (ENSCPOG00000039321) #27 MCM4 (ENSCPOG00000003682) #28 PRKDC (ENSCPOG00000013944) ENSCPOG00000036691 Hystricomorpha_b ANCESTRAL SPECIES 27 ENSGT00390000001029 ENSGT00940000159246 ENSGT00390000003248.a.a.a.b.cb.b.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00390000009040 ENSGT00940000154185.bb.a ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871.v #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00390000014654 #30 ENSGT00940000155908.b ENSGT00940000161075 ENSGT00940000157478 ENSGT00940000157170 ENSGT00390000010251 Long-tailed chinchilla MODERN SPECIES 161 CHCHD7 (ENSCLAG00000009729) PLAG1 (ENSCLAG00000013839) RPS20 (ENSCLAG00000015938) LYN (ENSCLAG00000010085) TGS1 (ENSCLAG00000009468) TMEM68 (ENSCLAG00000009473) XKR4 (ENSCLAG00000010575) ENSCLAG00000011553 MRPL15 (ENSCLAG00000010064) ENSCLAG00000014943 TCEA1 (ENSCLAG00000013516) ENSCLAG00000016009 ATP6V1H (ENSCLAG00000009337) OPRK1 (ENSCLAG00000009850) ENSCLAG00000009340 RB1CC1 (ENSCLAG00000009807) #22 ENSCLAG00000014346 ST18 (ENSCLAG00000011202) #23 PCMTD1 (ENSCLAG00000009964) ##24 ENSCLAG00000014877 SNTG1 (ENSCLAG00000013065) #25 SNAI2 (ENSCLAG00000011797) CLXN (ENSCLAG00000015811) UBE2V2 (ENSCLAG00000010839) #27 MCM4 (ENSCLAG00000014363) #28 PRKDC (ENSCLAG00000009459) SPIDR (ENSCLAG00000009550) #30 ENSCLAG00000009679 ENSCLAG00000017747 IQSEC3 (ENSCLAG00000011610) SLC6A12 (ENSCLAG00000016481) Degu MODERN SPECIES 95 LYN (ENSODEG00000002925) ENSODEG00000018874 TGS1 (ENSODEG00000002948) ENSODEG00000003120 XKR4 (ENSODEG00000003156) ENSODEG00000003202 ENSODEG00000018873 ENSODEG00000002691 ENSODEG00000002737 ENSODEG00000002753 ENSODEG00000002823 ATP6V1H (ENSODEG00000002840) ENSODEG00000002936 OPRK1 (ENSODEG00000002988) NPBWR1 (ENSODEG00000019191) ENSODEG00000003047 #22 ENSODEG00000003192 #22 ENSODEG00000003208 ST18 (ENSODEG00000003288) #23 PCMTD1 (ENSODEG00000003571) ##24 SNTG1 (ENSODEG00000003621) #25 ENSODEG00000003654 #26 CLXN (ENSODEG00000003725) ENSODEG00000003745 ENSODEG00000018960 ENSODEG00000019042 ENSODEG00000004479 #27 MCM4 (ENSODEG00000004626) #28 PRKDC (ENSODEG00000004916) CEBPD (ENSODEG00000002997) #29 ENSODEG00000003011 Rodentia_B ANCESTRAL SPECIES 17 ENSGT00390000003248.a.a.a.b.db ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000164647 ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.b.d #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 Kangaroo rat DUPLICATION Kangaroo rat MODERN SPECIES 328 Rps20 (ENSDORG00000005794) Lyn (ENSDORG00000000747) Tgs1 (ENSDORG00000012484) ENSDORG00000012483 Xkr4 (ENSDORG00000005763) Rp1 (ENSDORG00000009139) Sox17 (ENSDORG00000027735) Mrpl15 (ENSDORG00000012200) Lypla1 (ENSDORG00000001479) Tcea1 (ENSDORG00000015058) ENSDORG00000006333 Atp6v1h (ENSDORG00000007689) Oprk1 (ENSDORG00000009506) Npbwr1 (ENSDORG00000013949) ENSDORG00000005679 #22 ENSDORG00000029422 #22 Alkal1 (ENSDORG00000001904) St18 (ENSDORG00000002635) #23 Pcmtd1 (ENSDORG00000025253) ##24 Sntg1 (ENSDORG00000010206) #25 Snai2 (ENSDORG00000029620) Efcab1 (ENSDORG00000000823) Ube2v2 (ENSDORG00000029077) #27 ENSDORG00000004422 #28 Prkdc (ENSDORG00000004417) ENSDORG00000025707 Itgb1 (ENSDORG00000007780) Nrp1 (ENSDORG00000002431) Pard3 (ENSDORG00000000366) ENSDORG00000024661 ENSDORG00000000755 Kangaroo rat MODERN SPECIES 328 ENSDORG00000029409 Rps20 (ENSDORG00000005794) Lyn (ENSDORG00000000747) Tgs1 (ENSDORG00000012484) ENSDORG00000012483 Xkr4 (ENSDORG00000005763) Rp1 (ENSDORG00000009139) Sox17 (ENSDORG00000027735) Mrpl15 (ENSDORG00000012200) Lypla1 (ENSDORG00000001479) Tcea1 (ENSDORG00000015058) ENSDORG00000006333 Atp6v1h (ENSDORG00000007689) Oprk1 (ENSDORG00000009506) Npbwr1 (ENSDORG00000013949) ENSDORG00000005679 #22 ENSDORG00000029422 #22 Alkal1 (ENSDORG00000001904) St18 (ENSDORG00000002635) #23 Pcmtd1 (ENSDORG00000025253) ##24 Sntg1 (ENSDORG00000010206) #25 Snai2 (ENSDORG00000029620) Efcab1 (ENSDORG00000000823) Ube2v2 (ENSDORG00000029077) #27 ENSDORG00000004422 #28 Prkdc (ENSDORG00000004417) ENSDORG00000025707 Itgb1 (ENSDORG00000007780) Nrp1 (ENSDORG00000002431) Pard3 (ENSDORG00000000366) ENSDORG00000024661 Myomorpha ANCESTRAL SPECIES 18 ENSGT00390000003248.a.a.a.b.db ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000164647 ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00800000125285 Lesser Egyptian jerboa MODERN SPECIES 51 Tgs1 (ENSJJAG00000016239) Tmem68 (ENSJJAG00000009727) ENSJJAG00000003859 Xkr4 (ENSJJAG00000013870) ENSJJAG00000015642 ENSJJAG00000012132 Sox17 (ENSJJAG00000021381) Mrpl15 (ENSJJAG00000016599) ENSJJAG00000019339 Tcea1 (ENSJJAG00000020282) Rgs20 (ENSJJAG00000004359) Atp6v1h (ENSJJAG00000018257) Oprk1 (ENSJJAG00000019887) ENSJJAG00000011904 Npbwr1 (ENSJJAG00000012018) ENSJJAG00000019800 #22 Alkal1 (ENSJJAG00000000797) St18 (ENSJJAG00000020074) #23 ENSJJAG00000008876 ##24 ENSJJAG00000011205 Cxcl13 (ENSJJAG00000015547) Cnot6l (ENSJJAG00000020583) ENSJJAG00000012403 Mrpl1 (ENSJJAG00000012571) ENSJJAG00000017212 Fras1 (ENSJJAG00000013532) Anxa3 (ENSJJAG00000013184) ENSJJAG00000010058 ENSJJAG00000019336 Gk2 (ENSJJAG00000022767) Antxr2 (ENSJJAG00000017756) Muroidea ANCESTRAL SPECIES 14 ENSGT00390000003248.a.a.a.b.db ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000164647 ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00800000125285 Upper Galilee mountains blind mole rat DUPLICATION Upper Galilee mountains blind mole rat MODERN SPECIES 1121 Pclo (ENSNGAG00000000547) Sema3e (ENSNGAG00000000058) Sema3a (ENSNGAG00000013108) ENSNGAG00000000433 #22 ENSNGAG00000007720 #22 Alkal1 (ENSNGAG00000000002) St18 (ENSNGAG00000005949) #23 Pcmtd1 (ENSNGAG00000007582) ##24 Upper Galilee mountains blind mole rat MODERN SPECIES 1121 Pclo (ENSNGAG00000000547) Sema3e (ENSNGAG00000000058) Sema3a (ENSNGAG00000013108) ENSNGAG00000000433 #22 ENSNGAG00000007720 #22 Alkal1 (ENSNGAG00000000002) St18 (ENSNGAG00000005949) #23 Pcmtd1 (ENSNGAG00000007582) ##24 Muroidea_A ANCESTRAL SPECIES 3 ENSGT00390000003248.a.a.a.b.db ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000164647 ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00800000125285 Murinae ANCESTRAL SPECIES 2 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.db ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000005213 ENSGT00390000003849 ENSGT00390000010499 ENSGT00940000157709 ENSGT00390000002854 ENSGT00940000153776.a.a ENSGT01090000260080.b.b ENSGT00940000162447 ENSGT00940000158260 ENSGT00550000074850 ENSGT00390000015084.d Mus ANCESTRAL SPECIES 3 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.db ENSGT00940000158011 ENSGT00390000018056 ENSGT01100000265193 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000005213 ENSGT00390000003849 ENSGT00390000010499 ENSGT00940000157709 ENSGT00390000002854 ENSGT00940000153776.a.a ENSGT01090000260080.b.b ENSGT00940000162447 ENSGT00940000158260 ENSGT00550000074850 ENSGT00390000015084.d Mus_A ANCESTRAL SPECIES 5 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000005213 ENSGT00390000003849 ENSGT00390000010499 ENSGT00940000157709 ENSGT00390000002854 ENSGT00940000153776.a.a ENSGT01090000260080.b.b ENSGT00940000162447 ENSGT00940000158260 ENSGT00550000074850 ENSGT00390000015084.d Mus_B DUPLICATION Mus_B ANCESTRAL SPECIES 21 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871.`b #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000005213 ENSGT00390000003849 ENSGT00390000010499 ENSGT00940000157709 ENSGT00390000002854 ENSGT00940000153776.a.a ENSGT01090000260080.b.b ENSGT00940000162447 ENSGT00940000158260 ENSGT00550000074850 ENSGT00390000015084.d Mouse MODERN SPECIES Xkr4 (ENSMUSG00000051951) Rp1 (ENSMUSG00000025900) Sox17 (ENSMUSG00000025902) Mrpl15 (ENSMUSG00000033845) Lypla1 (ENSMUSG00000025903) Tcea1 (ENSMUSG00000033813) Rgs20 (ENSMUSG00000002459) Atp6v1h (ENSMUSG00000033793) Oprk1 (ENSMUSG00000025905) Npbwr1 (ENSMUSG00000033774) Rb1cc1 (ENSMUSG00000025907) #22 Alkal1 (ENSMUSG00000087247) St18 (ENSMUSG00000033740) #23 Pcmtd1 (ENSMUSG00000051285) ##24 Sntg1 (ENSMUSG00000025909) #25 Rrs1 (ENSMUSG00000061024) Adhfe1 (ENSMUSG00000025911) Vxn (ENSMUSG00000067879) Mybl1 (ENSMUSG00000025912) Vcpip1 (ENSMUSG00000045210) Sgk3 (ENSMUSG00000025915) Mcmdc2 (ENSMUSG00000046101) Tcf24 (ENSMUSG00000099032) Ppp1r42 (ENSMUSG00000025916) Cops5 (ENSMUSG00000025917) Cspp1 (ENSMUSG00000056763) Mus_C ANCESTRAL SPECIES 33 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000161936 ENSGT00390000015871.`b #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000005213 ENSGT00390000003849 ENSGT00390000010499 ENSGT00940000157709 ENSGT00390000002854 ENSGT00940000153776.a.a ENSGT01090000260080.b.b ENSGT00940000162447 ENSGT00940000158260 ENSGT00550000074850 ENSGT00390000015084.d spretus MODERN SPECIES Xkr4 (MGP_SPRETEiJ_G0014722) MGP_SPRETEiJ_G0014723 Rp1 (MGP_SPRETEiJ_G0014724) Sox17 (MGP_SPRETEiJ_G0014725) Mrpl15 (MGP_SPRETEiJ_G0014726) Lypla1 (MGP_SPRETEiJ_G0014727) MGP_SPRETEiJ_G0014728 Tcea1 (MGP_SPRETEiJ_G0014729) MGP_SPRETEiJ_G0014730 Atp6v1h (MGP_SPRETEiJ_G0014731) Oprk1 (MGP_SPRETEiJ_G0014732) Npbwr1 (MGP_SPRETEiJ_G0014733) Rb1cc1 (MGP_SPRETEiJ_G0014734) #22 MGP_SPRETEiJ_G0014735 St18 (MGP_SPRETEiJ_G0014736) #23 Pcmtd1 (MGP_SPRETEiJ_G0014737) ##24 Sntg1 (MGP_SPRETEiJ_G0014738) #25 Rrs1 (MGP_SPRETEiJ_G0014739) Adhfe1 (MGP_SPRETEiJ_G0014740) Vxn (MGP_SPRETEiJ_G0014741) Mybl1 (MGP_SPRETEiJ_G0014742) Vcpip1 (MGP_SPRETEiJ_G0014743) Sgk3 (MGP_SPRETEiJ_G0014744) Mcmdc2 (MGP_SPRETEiJ_G0014745) Tcf24 (MGP_SPRETEiJ_G0014746) Ppp1r42 (MGP_SPRETEiJ_G0014747) Cops5 (MGP_SPRETEiJ_G0014748) MGP_SPRETEiJ_G0014749 Steppe mouse MODERN SPECIES 2952 Npbwr1 (ENSMSIG00000027552) Rb1cc1 (ENSMSIG00000027558) #22 Alkal1 (ENSMSIG00000027590) ENSMSIG00000027601 ENSMSIG00000027606 St18 (ENSMSIG00000027619) #23 ENSMSIG00000027891 ##24 Mus_B ANCESTRAL SPECIES ENSGT00390000015871.ab #22 Mus_C ANCESTRAL SPECIES ENSGT00390000015871.ab #22 Steppe mouse MODERN SPECIES 92 ENSMSIG00000018252 Ano3 (ENSMSIG00000018263) Muc15 (ENSMSIG00000018297) ENSMSIG00000018355 ENSMSIG00000018460 #22 Or4f52 (ENSMSIG00000018475) ENSMSIG00000018490 Or4f53 (ENSMSIG00000018508) Or4k35 (ENSMSIG00000018523) Or4f54 (ENSMSIG00000018530) Or4g16 (ENSMSIG00000018538) Or4k36 (ENSMSIG00000018545) Or4k37 (ENSMSIG00000018556) Ryukyu mouse MODERN SPECIES Xkr4 (MGP_CAROLIEiJ_G0013919) Rp1 (MGP_CAROLIEiJ_G0013920) Sox17 (MGP_CAROLIEiJ_G0013921) Mrpl15 (MGP_CAROLIEiJ_G0013922) Lypla1 (MGP_CAROLIEiJ_G0013923) MGP_CAROLIEiJ_G0013924 Tcea1 (MGP_CAROLIEiJ_G0013925) Rgs20 (MGP_CAROLIEiJ_G0013926) Atp6v1h (MGP_CAROLIEiJ_G0013927) Oprk1 (MGP_CAROLIEiJ_G0013928) Npbwr1 (MGP_CAROLIEiJ_G0013929) Rb1cc1 (MGP_CAROLIEiJ_G0013930) #22 Alkal1 (MGP_CAROLIEiJ_G0013931) St18 (MGP_CAROLIEiJ_G0013932) #23 MGP_CAROLIEiJ_G0013933 ##24 Sntg1 (MGP_CAROLIEiJ_G0013934) #25 MGP_CAROLIEiJ_G0013935 Rrs1 (MGP_CAROLIEiJ_G0013936) Adhfe1 (MGP_CAROLIEiJ_G0013937) Vxn (MGP_CAROLIEiJ_G0013938) Mybl1 (MGP_CAROLIEiJ_G0013939) Vcpip1 (MGP_CAROLIEiJ_G0013940) Sgk3 (MGP_CAROLIEiJ_G0013941) Mcmdc2 (MGP_CAROLIEiJ_G0013942) Tcf24 (MGP_CAROLIEiJ_G0013943) Ppp1r42 (MGP_CAROLIEiJ_G0013944) Cops5 (MGP_CAROLIEiJ_G0013945) Shrew mouse MODERN SPECIES 14 Lyn (MGP_PahariEiJ_G0023903) MGP_PahariEiJ_G0023902 MGP_PahariEiJ_G0023901 MGP_PahariEiJ_G0023900 Xkr4 (MGP_PahariEiJ_G0023899) Rp1 (MGP_PahariEiJ_G0023898) Sox17 (MGP_PahariEiJ_G0023897) Mrpl15 (MGP_PahariEiJ_G0023896) Lypla1 (MGP_PahariEiJ_G0023895) MGP_PahariEiJ_G0023894 Tcea1 (MGP_PahariEiJ_G0023893) Rgs20 (MGP_PahariEiJ_G0023892) Atp6v1h (MGP_PahariEiJ_G0023891) Oprk1 (MGP_PahariEiJ_G0023890) Npbwr1 (MGP_PahariEiJ_G0023889) Rb1cc1 (MGP_PahariEiJ_G0023888) #22 MGP_PahariEiJ_G0023887 St18 (MGP_PahariEiJ_G0023886) #23 Pcmtd1 (MGP_PahariEiJ_G0023885) ##24 Sntg1 (MGP_PahariEiJ_G0023884) #25 Rrs1 (MGP_PahariEiJ_G0023883) Adhfe1 (MGP_PahariEiJ_G0023882) Vxn (MGP_PahariEiJ_G0023881) Mybl1 (MGP_PahariEiJ_G0023880) Vcpip1 (MGP_PahariEiJ_G0023879) Sgk3 (MGP_PahariEiJ_G0023878) Mcmdc2 (MGP_PahariEiJ_G0023877) Tcf24 (MGP_PahariEiJ_G0023876) Ppp1r42 (MGP_PahariEiJ_G0023875) Cops5 (MGP_PahariEiJ_G0023874) Cspp1 (MGP_PahariEiJ_G0023873) Rat MODERN SPECIES 15 Tgs1 (ENSRNOG00000008156) Tmem68 (ENSRNOG00000008872) Xkr4 (ENSRNOG00000027276) Cyld-ps1 (ENSRNOG00000008861) Rp1 (ENSRNOG00000008807) ENSRNOG00000065942 Sumo4 (ENSRNOG00000069967) Sox17 (ENSRNOG00000027357) Mrpl15 (ENSRNOG00000008566) Lypla1 (ENSRNOG00000008320) Tcea1 (ENSRNOG00000022323) Rgs20 (ENSRNOG00000008100) Atp6v1h (ENSRNOG00000030862) Oprk1 (ENSRNOG00000007647) Npbwr1 (ENSRNOG00000007640) Rb1cc1 (ENSRNOG00000006833) #22 Alkal1 (ENSRNOG00000048703) St18 (ENSRNOG00000006200) #23 AABR07046956.1 (ENSRNOG00000040219) Pcmtd1 (ENSRNOG00000005730) ##24 ENSRNOG00000064844 ENSRNOG00000063427 ENSRNOG00000063845 Sntg1 (ENSRNOG00000007294) #25 Rrs1 (ENSRNOG00000007240) Adhfe1 (ENSRNOG00000007069) Vxn (ENSRNOG00000021663) Mybl1 (ENSRNOG00000021669) Vcpip1 (ENSRNOG00000006980) Sgk3 (ENSRNOG00000049052) Mcmdc2 (ENSRNOG00000021702) Cricetidae ANCESTRAL SPECIES 2 ENSGT00390000003248.a.a.a.b.db.d ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000164647 ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 Cricetinae ANCESTRAL SPECIES 31 ENSGT00390000003248.a.a.a.b.db.d ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000164647 ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 Golden Hamster DUPLICATION Golden Hamster MODERN SPECIES 839 Oprk1 (ENSMAUG00000001461) ENSMAUG00000003064 Npbwr1 (ENSMAUG00000015729) ENSMAUG00000002024 #22 ENSMAUG00000000926 #22 Alkal1 (ENSMAUG00000001110) ENSMAUG00000001039 St18 (ENSMAUG00000000573) #23 Golden Hamster MODERN SPECIES 839 Oprk1 (ENSMAUG00000001461) ENSMAUG00000003064 Npbwr1 (ENSMAUG00000015729) ENSMAUG00000002024 #22 ENSMAUG00000000926 #22 Alkal1 (ENSMAUG00000001110) ENSMAUG00000001039 St18 (ENSMAUG00000000573) #23 Chinese hamster chok1gshd MODERN SPECIES 136 Lyn (ENSCGRG00001023003) Tgs1 (ENSCGRG00001019470) Tmem68 (ENSCGRG00001014894) ENSCGRG00001014282 ENSCGRG00001013815 ENSCGRG00001010786 Sox17 (ENSCGRG00001009950) ENSCGRG00001020498 ENSCGRG00001016962 ENSCGRG00001000991 Rgs20 (ENSCGRG00001023847) Atp6v1h (ENSCGRG00001018456) Oprk1 (ENSCGRG00001014321) ENSCGRG00001013124 Npbwr1 (ENSCGRG00001001773) Rb1cc1 (ENSCGRG00001010377) #22 Alkal1 (ENSCGRG00001008308) St18 (ENSCGRG00001012689) #23 Pcmtd1 (ENSCGRG00001010283) ##24 Cricetidae_B ANCESTRAL SPECIES 50 ENSGT00390000003248.a.a.a.b.cb.a.a ENSGT00390000003248.a.a.a.b.db.d ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 Prairie vole DUPLICATION Prairie vole MODERN SPECIES 355 Tgs1 (ENSMOCG00000019560) Tmem68 (ENSMOCG00000004085) ENSMOCG00000017472 Xkr4 (ENSMOCG00000014076) ENSMOCG00000003814 ENSMOCG00000019449 ENSMOCG00000021042 Mrpl15 (ENSMOCG00000015777) ENSMOCG00000018466 Lypla1 (ENSMOCG00000016895) Tcea1 (ENSMOCG00000018663) Rgs20 (ENSMOCG00000021946) Atp6v1h (ENSMOCG00000013542) Oprk1 (ENSMOCG00000021359) Npbwr1 (ENSMOCG00000004089) ENSMOCG00000013160 #22 ENSMOCG00000018517 #22 Alkal1 (ENSMOCG00000005863) St18 (ENSMOCG00000021621) #23 Pcmtd1 (ENSMOCG00000015657) ##24 Sntg1 (ENSMOCG00000017645) #25 ENSMOCG00000004384 Hsdl2 (ENSMOCG00000011024) Ptbp3 (ENSMOCG00000019609) Susd1 (ENSMOCG00000000787) Ugcg (ENSMOCG00000003778) Shoc1 (ENSMOCG00000017996) ENSMOCG00000000713 Dnajc25 (ENSMOCG00000020114) Ptgr1 (ENSMOCG00000015613) Zkscan16 (ENSMOCG00000019107) Prairie vole MODERN SPECIES 355 Tmem68 (ENSMOCG00000004085) ENSMOCG00000017472 Xkr4 (ENSMOCG00000014076) ENSMOCG00000003814 ENSMOCG00000019449 ENSMOCG00000021042 Mrpl15 (ENSMOCG00000015777) ENSMOCG00000018466 Lypla1 (ENSMOCG00000016895) Tcea1 (ENSMOCG00000018663) Rgs20 (ENSMOCG00000021946) Atp6v1h (ENSMOCG00000013542) Oprk1 (ENSMOCG00000021359) Npbwr1 (ENSMOCG00000004089) ENSMOCG00000013160 #22 ENSMOCG00000018517 #22 Alkal1 (ENSMOCG00000005863) St18 (ENSMOCG00000021621) #23 Pcmtd1 (ENSMOCG00000015657) ##24 Sntg1 (ENSMOCG00000017645) #25 ENSMOCG00000004384 Hsdl2 (ENSMOCG00000011024) Ptbp3 (ENSMOCG00000019609) Susd1 (ENSMOCG00000000787) Ugcg (ENSMOCG00000003778) Shoc1 (ENSMOCG00000017996) ENSMOCG00000000713 Dnajc25 (ENSMOCG00000020114) Ptgr1 (ENSMOCG00000015613) Zkscan16 (ENSMOCG00000019107) Ecpas (ENSMOCG00000020767) Northern American deer mouse MODERN SPECIES 11 Rp1 (ENSPEMG00000013397) ENSPEMG00000014386 ENSPEMG00000026817 Sox17 (ENSPEMG00000030488) Mrpl15 (ENSPEMG00000000583) ENSPEMG00000027695 ENSPEMG00000014138 Tcea1 (ENSPEMG00000023948) Rgs20 (ENSPEMG00000009893) Atp6v1h (ENSPEMG00000002059) ENSPEMG00000024522 Oprk1 (ENSPEMG00000030744) ENSPEMG00000004044 Npbwr1 (ENSPEMG00000001350) ENSPEMG00000027986 Rb1cc1 (ENSPEMG00000022179) #22 Alkal1 (ENSPEMG00000022797) ENSPEMG00000024780 ENSPEMG00000025981 St18 (ENSPEMG00000021799) #23 ENSPEMG00000029331 ENSPEMG00000009884 Pcmtd1 (ENSPEMG00000027595) ##24 Sntg1 (ENSPEMG00000008856) #25 Nkain3 (ENSPEMG00000000608) ENSPEMG00000006880 ENSPEMG00000029781 Prdm13 (ENSPEMG00000000098) Ccnc (ENSPEMG00000015952) Tstd3 (ENSPEMG00000011487) Usp45 (ENSPEMG00000006676) Lagomorpha ANCESTRAL SPECIES 112 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694.hb ENSGT00940000156694.gb ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00390000009113.a.b ENSGT00940000154681.a #26 ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000163032 #29 ENSGT00390000014654 #30 Rabbit MODERN SPECIES 14 TGS1 (ENSOCUG00000017522) TMEM68 (ENSOCUG00000017517) ENSOCUG00000027524 XKR4 (ENSOCUG00000017875) RP1 (ENSOCUG00000015022) ENSOCUG00000037040 ENSOCUG00000012651 ENSOCUG00000008012 MRPL15 (ENSOCUG00000001949) LYPLA1 (ENSOCUG00000006751) ENSOCUG00000001051 ATP6V1H (ENSOCUG00000016298) OPRK1 (ENSOCUG00000003120) NPBWR1 (ENSOCUG00000028231) ENSOCUG00000033530 RB1CC1 (ENSOCUG00000016393) #22 ALKAL1 (ENSOCUG00000029695) ST18 (ENSOCUG00000013284) #23 ENSOCUG00000026814 PCMTD1 (ENSOCUG00000016958) ##24 PXDNL (ENSOCUG00000005558) ENSOCUG00000016910 ENSOCUG00000022155 SNTG1 (ENSOCUG00000016550) #25 ENSOCUG00000023403 ENSOCUG00000038370 PPDPFL (ENSOCUG00000029166) ENSOCUG00000012254 #26 CLXN (ENSOCUG00000004518) ENSOCUG00000006933 #27 MCM4 (ENSOCUG00000001710) #28 Pika MODERN SPECIES 2 RB1CC1 (ENSOPRG00000011855) #22 Laurasiatheria ANCESTRAL SPECIES 18 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00940000164631 Laurasiatheria_a ANCESTRAL SPECIES 20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00940000164631 ENSGT00390000014654 #30 Laurasiatheria_b ANCESTRAL SPECIES 20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00940000164631 Carnivora ANCESTRAL SPECIES 22 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00940000164631 Caniformia ANCESTRAL SPECIES 23 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 Caniformia_b ANCESTRAL SPECIES 22 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT01090000260046.d ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 Ursidae ANCESTRAL SPECIES 56 ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT01090000260046.d ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00940000166869.b ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 Ursus ANCESTRAL SPECIES 110 ENSGT00940000159246 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00940000166869.b ENSGT00950000183032.A.a ##24 American black bear MODERN SPECIES 4769 RB1CC1 (ENSUAMG00000016759) #22 Polar bear MODERN SPECIES 296 MOS (ENSUMAG00000009785) RPS20 (ENSUMAG00000009783) ENSUMAG00000009782 LYN (ENSUMAG00000009778) TGS1 (ENSUMAG00000009761) TMEM68 (ENSUMAG00000009752) ENSUMAG00000009732 ENSUMAG00000009720 MRPL15 (ENSUMAG00000009710) LYPLA1 (ENSUMAG00000009670) TCEA1 (ENSUMAG00000009581) RGS20 (ENSUMAG00000009575) ATP6V1H (ENSUMAG00000009570) OPRK1 (ENSUMAG00000009564) NPBWR1 (ENSUMAG00000009560) RB1CC1 (ENSUMAG00000009553) #22 ENSUMAG00000009546 ST18 (ENSUMAG00000009506) #23 ENSUMAG00000009493 PCMTD1 (ENSUMAG00000009488) ##24 Giant Panda MODERN SPECIES 470 ENSAMEG00000027380 SOX17 (ENSAMEG00000025308) MRPL15 (ENSAMEG00000012437) LYPLA1 (ENSAMEG00000012413) TCEA1 (ENSAMEG00000012370) RGS20 (ENSAMEG00000012358) ATP6V1H (ENSAMEG00000012340) OPRK1 (ENSAMEG00000000914) ENSAMEG00000000916 NPBWR1 (ENSAMEG00000019245) ENSAMEG00000027572 RB1CC1 (ENSAMEG00000009073) #22 ALKAL1 (ENSAMEG00000023742) ST18 (ENSAMEG00000015014) #23 ENSAMEG00000024811 PCMTD1 (ENSAMEG00000015031) ##24 PXDNL (ENSAMEG00000015038) SNTG1 (ENSAMEG00000009598) #25 PPDPFL (ENSAMEG00000026535) SNAI2 (ENSAMEG00000009606) CLXN (ENSAMEG00000001642) ENSAMEG00000001652 UBE2V2 (ENSAMEG00000001644) #27 MCM4 (ENSAMEG00000001634) #28 PRKDC (ENSAMEG00000000249) ENSAMEG00000027341 #29 ENSAMEG00000000243 #30 Mustelinae ANCESTRAL SPECIES 209 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 American mink MODERN SPECIES 415 RB1CC1 (ENSNVIG00000024449) #22 ALKAL1 (ENSNVIG00000024444) ST18 (ENSNVIG00000024442) #23 PCMD1 (ENSNVIG00000024441) ##24 Ferret MODERN SPECIES 410 NPBWR1 (ENSMPUG00000020005) RB1CC1 (ENSMPUG00000006947) #22 ST18 (ENSMPUG00000006922) #23 PCMTD1 (ENSMPUG00000006912) ##24 PXDNL (ENSMPUG00000006895) ENSMPUG00000006836 Canidae ANCESTRAL SPECIES 42 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D Canis_lupus ANCESTRAL SPECIES 37 ENSGT00390000018056 ENSGT00390000011782 ENSGT00940000161833.i.a ENSGT00940000153525.h.c.a ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040.e ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000154037.B.`b.a.a ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D Dog MODERN SPECIES 21 ENSCAFG00845026296 ENSCAFG00845026276 ENSCAFG00845026256 XKR4 (ENSCAFG00845026228) RP1 (ENSCAFG00845026159) SOX17 (ENSCAFG00845026119) MRPL15 (ENSCAFG00845026048) TCEA1 (ENSCAFG00845025526) RGS20 (ENSCAFG00845025319) ATP6V1H (ENSCAFG00845024911) ENSCAFG00845024824 OPRK1 (ENSCAFG00845024764) NPBWR1 (ENSCAFG00845024737) RPSA (ENSCAFG00845024673) ENSCAFG00845024539 RB1CC1 (ENSCAFG00845024092) #22 ENSCAFG00845024001 ST18 (ENSCAFG00845029327) #23 PCMTD1 (ENSCAFG00845029271) ##24 PXDNL (ENSCAFG00845029236) ENSCAFG00845029197 SNTG1 (ENSCAFG00845028965) #25 PPDPFL (ENSCAFG00845028586) SNAI2 (ENSCAFG00845028533) EFCAB1 (ENSCAFG00845028482) ENSCAFG00845028428 ENSCAFG00845028412 UBE2V2 (ENSCAFG00845028369) #27 MCM4 (ENSCAFG00845028253) #28 PRKDC (ENSCAFG00845027748) Dingo MODERN SPECIES 30 ENSCAFG00020015479 ENSCAFG00020015466 SOX17 (ENSCAFG00020015465) ENSCAFG00020015460 ENSCAFG00020015458 LYPLA1 (ENSCAFG00020015455) TCEA1 (ENSCAFG00020015451) RGS20 (ENSCAFG00020015450) ATP6V1H (ENSCAFG00020015448) ENSCAFG00020015447 OPRK1 (ENSCAFG00020015444) NPBWR1 (ENSCAFG00020015443) ENSCAFG00020015442 ENSCAFG00020015441 ENSCAFG00020015440 RB1CC1 (ENSCAFG00020015438) #22 ALKAL1 (ENSCAFG00020015436) ST18 (ENSCAFG00020015423) #23 PCMTD1 (ENSCAFG00020015421) ##24 PXDNL (ENSCAFG00020015420) SNTG1 (ENSCAFG00020015399) #25 ENSCAFG00020015388 SNAI2 (ENSCAFG00020015384) CLXN (ENSCAFG00020015379) ENSCAFG00020015372 UBE2V2 (ENSCAFG00020015367) #27 ENSCAFG00020015365 MCM4 (ENSCAFG00020015359) #28 PRKDC (ENSCAFG00020015315) Red fox MODERN SPECIES 3 TGS1 (ENSVVUG00000017821) TMEM68 (ENSVVUG00000017816) ENSVVUG00000017810 XKR4 (ENSVVUG00000017809) ENSVVUG00000017799 RP1 (ENSVVUG00000017796) ENSVVUG00000017795 MRPL15 (ENSVVUG00000017791) TCEA1 (ENSVVUG00000017781) ENSVVUG00000017778 ATP6V1H (ENSVVUG00000017772) ENSVVUG00000017766 ENSVVUG00000017765 OPRK1 (ENSVVUG00000017764) NPBWR1 (ENSVVUG00000017761) RB1CC1 (ENSVVUG00000017756) #22 ST18 (ENSVVUG00000017692) #23 PCMTD1 (ENSVVUG00000017671) ##24 PXDNL (ENSVVUG00000017649) SNTG1 (ENSVVUG00000017641) #25 SNAI2 (ENSVVUG00000017625) EFCAB1 (ENSVVUG00000017607) UBE2V2 (ENSVVUG00000017601) #27 MCM4 (ENSVVUG00000016856) #28 PRKDC (ENSVVUG00000014714) Felidae ANCESTRAL SPECIES 22 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT01070000254546 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00940000164631 Panthera ANCESTRAL SPECIES 16 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT01070000254546 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654.c #30 ENSGT00940000164631 Panthera_a ANCESTRAL SPECIES 16 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT01070000254546 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00940000163562 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654.c #30 ENSGT00940000164631 lion MODERN SPECIES 509 ENSPLOG00000000280 LYN (ENSPLOG00000000327) TGS1 (ENSPLOG00000000349) TMEM68 (ENSPLOG00000000394) XKR4 (ENSPLOG00000000434) ENSPLOG00000000462 SOX17 (ENSPLOG00000000493) ENSPLOG00000000502 MRPL15 (ENSPLOG00000000514) LYPLA1 (ENSPLOG00000000564) TCEA1 (ENSPLOG00000000655) ENSPLOG00000000706 ATP6V1H (ENSPLOG00000000736) OPRK1 (ENSPLOG00000000775) NPBWR1 (ENSPLOG00000000787) RB1CC1 (ENSPLOG00000000813) #22 ALKAL1 (ENSPLOG00000000852) ENSPLOG00000000875 ST18 (ENSPLOG00000000893) #23 PCMTD1 (ENSPLOG00000000934) ##24 PXDNL (ENSPLOG00000000964) SNTG1 (ENSPLOG00000001368) #25 PPDPFL (ENSPLOG00000001983) SNAI2 (ENSPLOG00000001998) CLXN (ENSPLOG00000002026) ENSPLOG00000002058 UBE2V2 (ENSPLOG00000002069) #27 ENSPLOG00000002087 MCM4 (ENSPLOG00000002136) #28 PRKDC (ENSPLOG00000002399) CEBPD (ENSPLOG00000002729) #29 leopard MODERN SPECIES 173 RP1 (ENSPPRG00000012263) SOX17 (ENSPPRG00000012272) ENSPPRG00000012283 ENSPPRG00000012312 MRPL15 (ENSPPRG00000012324) LYPLA1 (ENSPPRG00000012412) TCEA1 (ENSPPRG00000012972) RGS20 (ENSPPRG00000013118) ATP6V1H (ENSPPRG00000013210) OPRK1 (ENSPPRG00000013253) NPBWR1 (ENSPPRG00000012360) ENSPPRG00000013308 RB1CC1 (ENSPPRG00000013323) #22 ALKAL1 (ENSPPRG00000013373) ENSPPRG00000012381 ENSPPRG00000013435 ENSPPRG00000012388 Tiger MODERN SPECIES 424 OPRK1 (ENSPTIG00000010696) RB1CC1 (ENSPTIG00000010632) #22 ENSPTIG00000008779 Cat MODERN SPECIES 249 RPS20 (ENSFCAG00000029233) LYN (ENSFCAG00000023614) TGS1 (ENSFCAG00000011478) TMEM68 (ENSFCAG00000011477) XKR4 (ENSFCAG00000008909) RP1 (ENSFCAG00000028934) SOX17 (ENSFCAG00000045851) ENSFCAG00000039931 MRPL15 (ENSFCAG00000033969) LYPLA1 (ENSFCAG00000023494) TCEA1 (ENSFCAG00000014436) ENSFCAG00000014408 ATP6V1H (ENSFCAG00000014405) OPRK1 (ENSFCAG00000013774) NPBWR1 (ENSFCAG00000040203) RB1CC1 (ENSFCAG00000010353) #22 ALKAL1 (ENSFCAG00000041171) ST18 (ENSFCAG00000008556) #23 PCMTD1 (ENSFCAG00000001192) ##24 ENSFCAG00000052760 PXDNL (ENSFCAG00000005332) ENSFCAG00000031910 SNTG1 (ENSFCAG00000033157) #25 PPDPFL (ENSFCAG00000043976) ENSFCAG00000015779 #26 CLXN (ENSFCAG00000008555) ENSFCAG00000034272 #27 MCM4 (ENSFCAG00000011378) #28 PRKDC (ENSFCAG00000011374) CEBPD (ENSFCAG00000040821) #29 SPIDR (ENSFCAG00000012472) #30 Laurasiatheria_c ANCESTRAL SPECIES 19 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 Equus ANCESTRAL SPECIES 14 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 ENSGT00940000156113 ENSGT00390000006658.a.b ENSGT00390000000521 ENSGT00940000153801.b Donkey MODERN SPECIES 3 RP1 (ENSEASG00005016381) SOX17 (ENSEASG00005028498) ENSEASG00005025388 ENSEASG00005035435 ENSEASG00005027512 ENSEASG00005035589 ENSEASG00005029551 LYPLA1 (ENSEASG00005020322) TCEA1 (ENSEASG00005020313) RGS20 (ENSEASG00005020310) ATP6V1H (ENSEASG00005020298) ENSEASG00005026860 ENSEASG00005009805 OPRK1 (ENSEASG00005026342) NPBWR1 (ENSEASG00005020280) RB1CC1 (ENSEASG00005020230) #22 ALKAL1 (ENSEASG00005020213) ST18 (ENSEASG00005020200) #23 PCMTD1 (ENSEASG00005020195) ##24 SNTG1 (ENSEASG00005020185) #25 PPDPFL (ENSEASG00005024997) ENSEASG00005009186 #26 CLXN (ENSEASG00005009190) UBE2V2 (ENSEASG00005024827) #27 MCM4 (ENSEASG00005009194) #28 ENSEASG00005035234 ENSEASG00005037902 PRKDC (ENSEASG00005009458) ENSEASG00005011359 #29 ENSEASG00005011360 #30 ENSEASG00005030668 Horse MODERN SPECIES 30 XKR4 (ENSECAG00000006978) RP1 (ENSECAG00000007686) ENSECAG00000043138 ENSECAG00000051067 MRPL15 (ENSECAG00000012110) LYPLA1 (ENSECAG00000016530) ENSECAG00000052889 TCEA1 (ENSECAG00000013436) ENSECAG00000050151 RGS20 (ENSECAG00000018510) ENSECAG00000044966 ATP6V1H (ENSECAG00000024159) OPRK1 (ENSECAG00000014442) ENSECAG00000047787 NPBWR1 (ENSECAG00000005077) RB1CC1 (ENSECAG00000017579) #22 ALKAL1 (ENSECAG00000039026) ENSECAG00000058919 ENSECAG00000053325 PCMTD1 (ENSECAG00000022204) ##24 ENSECAG00000053013 PXDNL (ENSECAG00000022817) ENSECAG00000019962 SNTG1 (ENSECAG00000000087) #25 ENSECAG00000000401 ENSECAG00000056104 ENSECAG00000051290 PPDPFL (ENSECAG00000040755) SNAI2 (ENSECAG00000010120) #26 CLXN (ENSECAG00000014162) UBE2V2 (ENSECAG00000027910) #27 Chiroptera ANCESTRAL SPECIES 42 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 Megabat MODERN SPECIES 3035 RB1CC1 (ENSPVAG00000005548) #22 ALKAL1 (ENSPVAG00000005545) Microchiroptera ANCESTRAL SPECIES 41 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 Greater horseshoe bat MODERN SPECIES 5 TGS1 (ENSRFEG00010008465) TMEM68 (ENSRFEG00010008543) ENSRFEG00010008656 XKR4 (ENSRFEG00010008664) ENSRFEG00010008703 ENSRFEG00010008837 RP1 (ENSRFEG00010008854) SOX17 (ENSRFEG00010008892) ENSRFEG00010008939 TCEA1 (ENSRFEG00010009037) RGS20 (ENSRFEG00010009394) ENSRFEG00010009490 ATP6V1H (ENSRFEG00010009527) OPRK1 (ENSRFEG00010009620) NPBWR1 (ENSRFEG00010009636) RB1CC1 (ENSRFEG00010009654) #22 ST18 (ENSRFEG00010009724) #23 ENSRFEG00010009897 ##24 SNTG1 (ENSRFEG00010010115) #25 ENSRFEG00010012270 SETSIP (ENSRFEG00010012378) PPDPFL (ENSRFEG00010012401) ENSRFEG00010012447 #26 CLXN (ENSRFEG00010012494) ENSRFEG00010012650 #27 ENSRFEG00010012735 MCM4 (ENSRFEG00010012774) #28 PRKDC (ENSRFEG00010012932) CEBPD (ENSRFEG00010013042) #29 SPIDR (ENSRFEG00010013063) #30 ENSRFEG00010013158 Microbat DUPLICATION Microbat MODERN SPECIES 2543 ENSMLUG00000025205 #22 Microbat MODERN SPECIES 964 RNF139 (ENSMLUG00000026526) TRMT12 (ENSMLUG00000003753) TMEM65 (ENSMLUG00000003750) FER1L6 (ENSMLUG00000006536) FAM91A1 (ENSMLUG00000001436) ANXA13 (ENSMLUG00000001429) KLHL38 (ENSMLUG00000017639) FBXO32 (ENSMLUG00000013223) NTAQ1 (ENSMLUG00000013217) ENSMLUG00000015236 ENSMLUG00000026549 ZHX1 (ENSMLUG00000013728) ENSMLUG00000013719 FAM83A (ENSMLUG00000013710) ENSMLUG00000023884 ENSMLUG00000010446 #22 ST18 (ENSMLUG00000013211) #23 PEX2 (ENSMLUG00000017006) ZFHX4 (ENSMLUG00000016989) HNF4G (ENSMLUG00000004011) CRISPLD1 (ENSMLUG00000016992) PI15 (ENSMLUG00000016990) GDAP1 (ENSMLUG00000013091) JPH1 (ENSMLUG00000013083) LY96 (ENSMLUG00000015919) TMEM70 (ENSMLUG00000015908) ENSMLUG00000005371 UBE2W (ENSMLUG00000027009) STAU2 (ENSMLUG00000000592) RDH10 (ENSMLUG00000003696) RPL7 (ENSMLUG00000028550) Artiodactyla ANCESTRAL SPECIES 20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00940000164631 ENSGT00390000014654 #30 Suina ANCESTRAL SPECIES 26 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 Chacoan peccary MODERN SPECIES 840 MOS (ENSCWAG00000008622) RPS20 (ENSCWAG00000008512) LYN (ENSCWAG00000008356) TGS1 (ENSCWAG00000008274) TMEM68 (ENSCWAG00000008128) XKR4 (ENSCWAG00000008058) RP1 (ENSCWAG00000007943) SOX17 (ENSCWAG00000016827) MRPL15 (ENSCWAG00000016794) LYPLA1 (ENSCWAG00000016699) TCEA1 (ENSCWAG00000016391) RGS20 (ENSCWAG00000016261) ATP6V1H (ENSCWAG00000016149) OPRK1 (ENSCWAG00000016074) NPBWR1 (ENSCWAG00000016059) RB1CC1 (ENSCWAG00000016009) #22 ALKAL1 (ENSCWAG00000015933) ST18 (ENSCWAG00000015832) #23 PCMTD1 (ENSCWAG00000015794) ##24 SNTG1 (ENSCWAG00000009208) #25 SNAI2 (ENSCWAG00000008909) CLXN (ENSCWAG00000008778) Pig MODERN SPECIES 12 MOS (ENSSSCG00000006248) RPS20 (ENSSSCG00000040470) LYN (ENSSSCG00000006250) TGS1 (ENSSSCG00000006251) TMEM68 (ENSSSCG00000006252) XKR4 (ENSSSCG00000031813) RP1 (ENSSSCG00000042752) SOX17 (ENSSSCG00000060730) MRPL15 (ENSSSCG00000030578) LYPLA1 (ENSSSCG00000006260) TCEA1 (ENSSSCG00000006261) RGS20 (ENSSSCG00000006262) ATP6V1H (ENSSSCG00000006263) OPRK1 (ENSSSCG00000006264) NPBWR1 (ENSSSCG00000059721) RB1CC1 (ENSSSCG00000028902) #22 ALKAL1 (ENSSSCG00000033922) ST18 (ENSSSCG00000006266) #23 PCMTD1 (ENSSSCG00000006267) ##24 SNTG1 (ENSSSCG00000034495) #25 ENSSSCG00000045207 SNAI2 (ENSSSCG00000039568) CLXN (ENSSSCG00000032887) UBE2V2 (ENSSSCG00000022190) #27 MCM4 (ENSSSCG00000006273) #28 PRKDC (ENSSSCG00000006274) CEBPD (ENSSSCG00000032367) #29 SPIDR (ENSSSCG00000006277) #30 PRRX1 (ENSSSCG00000031503) GORAB (ENSSSCG00000006280) NTMT2 (ENSSSCG00000006281) Artiodactyla_a ANCESTRAL SPECIES 20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00940000164631 ENSGT00390000014654 #30 Camelidae ANCESTRAL SPECIES 77 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D Alpaca MODERN SPECIES 2613 ENSVPAG00000010783 #22 ENSVPAG00000010782 Artiodactyla_b ANCESTRAL SPECIES 20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00940000164631 ENSGT00390000014654 #30 Cetacea ANCESTRAL SPECIES 17 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185.h ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT00740000115534.a.b.f.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00940000164631 ENSGT00390000014654 #30 Odontoceti ANCESTRAL SPECIES 20 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185.h ENSGT00940000155121.n ENSGT00940000155121.m.b ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 Odontoceti_a ANCESTRAL SPECIES 17 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185.h ENSGT00940000155121.n ENSGT00940000155121.m.a ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 Odontoceti_b ANCESTRAL SPECIES 19 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185.h ENSGT00940000155121.m.a ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 Monodontidae ANCESTRAL SPECIES 20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040 ENSGT00940000154185.h ENSGT00940000155121.m.a ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00940000163032 #29 ENSGT00390000014654 #30 Narwhal MODERN SPECIES 300 RPS20 (ENSMMNG00015015116) LYN (ENSMMNG00015015150) TGS1 (ENSMMNG00015015178) TMEM68 (ENSMMNG00015015221) XKR4 (ENSMMNG00015015264) ENSMMNG00015015277 RP1 (ENSMMNG00015015294) SOX17 (ENSMMNG00015015308) MRPL15 (ENSMMNG00015015322) LYPLA1 (ENSMMNG00015015363) ENSMMNG00015015524 RGS20 (ENSMMNG00015015612) ATP6V1H (ENSMMNG00015015669) OPRK1 (ENSMMNG00015015726) NPBWR1 (ENSMMNG00015015745) RB1CC1 (ENSMMNG00015015771) #22 ALKAL1 (ENSMMNG00015015819) ST18 (ENSMMNG00015015870) #23 PCMTD1 (ENSMMNG00015015912) ##24 ENSMMNG00015015939 SNTG1 (ENSMMNG00015016248) #25 PPDPFL (ENSMMNG00015017304) SNAI2 (ENSMMNG00015017362) CLXN (ENSMMNG00015017393) ENSMMNG00015017447 #27 MCM4 (ENSMMNG00015017615) #28 PRKDC (ENSMMNG00015018377) CEBPD (ENSMMNG00015019866) #29 SPIDR (ENSMMNG00015019877) #30 Beluga whale MODERN SPECIES 47 TMEM68 (ENSDLEG00000015101) XKR4 (ENSDLEG00000015131) ENSDLEG00000015141 RP1 (ENSDLEG00000015156) SOX17 (ENSDLEG00000015171) TPRKB (ENSDLEG00000015177) MRPL15 (ENSDLEG00000015181) ENSDLEG00000015196 ENSDLEG00000015212 ENSDLEG00000015221 ENSDLEG00000015228 RGS20 (ENSDLEG00000015243) ATP6V1H (ENSDLEG00000015265) OPRK1 (ENSDLEG00000015294) NPBWR1 (ENSDLEG00000015304) RB1CC1 (ENSDLEG00000015318) #22 ST18 (ENSDLEG00000015349) #23 PCMTD1 (ENSDLEG00000015382) ##24 ENSDLEG00000015408 SNTG1 (ENSDLEG00000015417) #25 SNAI2 (ENSDLEG00000015475) EFCAB1 (ENSDLEG00000015484) UBE2V2 (ENSDLEG00000015496) #27 MCM4 (ENSDLEG00000015514) #28 PRKDC (ENSDLEG00000016005) CEBPD (ENSDLEG00000020408) #29 SPIDR (ENSDLEG00000020423) #30 Vaquita MODERN SPECIES 8 LYN (ENSPSNG00000012016) TGS1 (ENSPSNG00000011959) TMEM68 (ENSPSNG00000011792) XKR4 (ENSPSNG00000011695) ENSPSNG00000011669 ENSPSNG00000011608 RP1 (ENSPSNG00000011554) SOX17 (ENSPSNG00000011510) MRPL15 (ENSPSNG00000011469) ENSPSNG00000011338 ENSPSNG00000011078 RGS20 (ENSPSNG00000010954) ATP6V1H (ENSPSNG00000010849) OPRK1 (ENSPSNG00000010750) NPBWR1 (ENSPSNG00000020139) RB1CC1 (ENSPSNG00000020100) #22 ALKAL1 (ENSPSNG00000020029) ST18 (ENSPSNG00000019900) #23 PCMTD1 (ENSPSNG00000019835) ##24 ENSPSNG00000019801 SNTG1 (ENSPSNG00000018422) #25 PPDPFL (ENSPSNG00000018058) SNAI2 (ENSPSNG00000018025) CLXN (ENSPSNG00000017935) ENSPSNG00000017756 #27 MCM4 (ENSPSNG00000017171) #28 PRKDC (ENSPSNG00000016032) CEBPD (ENSPSNG00000015718) #29 SPIDR (ENSPSNG00000015635) #30 Dolphin MODERN SPECIES 2552 RB1CC1 (ENSTTRG00000014733) #22 ALKAL1 (ENSTTRG00000014732) Sperm whale MODERN SPECIES 6 RPS20 (ENSPCTG00005006918) LYN (ENSPCTG00005006994) TGS1 (ENSPCTG00005007087) TMEM68 (ENSPCTG00005007220) ENSPCTG00005007335 RP1 (ENSPCTG00005007366) SOX17 (ENSPCTG00005007395) ENSPCTG00005007411 MRPL15 (ENSPCTG00005007420) LYPLA1 (ENSPCTG00005007458) TCEA1 (ENSPCTG00005007517) RGS20 (ENSPCTG00005007671) ATP6V1H (ENSPCTG00005007732) OPRK1 (ENSPCTG00005007828) NPBWR1 (ENSPCTG00005007847) RB1CC1 (ENSPCTG00005007860) #22 ALKAL1 (ENSPCTG00005007890) ST18 (ENSPCTG00005007942) #23 PCMTD1 (ENSPCTG00005008026) ##24 SNTG1 (ENSPCTG00005008190) #25 PPDPFL (ENSPCTG00005011221) SNAI2 (ENSPCTG00005011333) EFCAB1 (ENSPCTG00005011370) UBE2V2 (ENSPCTG00005011488) #27 MCM4 (ENSPCTG00005011558) #28 PRKDC (ENSPCTG00005012331) CEBPD (ENSPCTG00005017828) #29 ENSPCTG00005017855 #30 Blue whale MODERN SPECIES 8 LYN (ENSBMSG00010015246) TGS1 (ENSBMSG00010015383) TMEM68 (ENSBMSG00010015509) XKR4 (ENSBMSG00010015591) ENSBMSG00010015625 RP1 (ENSBMSG00010015672) SOX17 (ENSBMSG00010015701) MRPL15 (ENSBMSG00010015731) LYPLA1 (ENSBMSG00010015788) TCEA1 (ENSBMSG00010015953) RGS20 (ENSBMSG00010016086) ATP6V1H (ENSBMSG00010016209) OPRK1 (ENSBMSG00010016297) ENSBMSG00010016334 NPBWR1 (ENSBMSG00010016365) RB1CC1 (ENSBMSG00010016414) #22 ALKAL1 (ENSBMSG00010016599) ST18 (ENSBMSG00010016711) #23 PCMTD1 (ENSBMSG00010016806) ##24 SNTG1 (ENSBMSG00010017144) #25 PPDPFL (ENSBMSG00010020986) SNAI2 (ENSBMSG00010021014) CLXN (ENSBMSG00010021037) UBE2V2 (ENSBMSG00010021065) #27 MCM4 (ENSBMSG00010021185) #28 PRKDC (ENSBMSG00010021768) CEBPD (ENSBMSG00010022251) #29 ENSBMSG00010022252 ENSBMSG00010022256 #30 Pecora ANCESTRAL SPECIES 20 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.u ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040.a ENSGT00940000154185 ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a.g.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00390000014654 #30 ENSGT00940000163032 #29 ENSGT01030000235502 ENSGT00940000162302 ENSGT00940000165552 Yarkand deer DUPLICATION Yarkand deer MODERN SPECIES 13 MOS (ENSCHYG00000024173) RPS20 (ENSCHYG00000024102) LYN (ENSCHYG00000023984) TGS1 (ENSCHYG00000023932) TMEM68 (ENSCHYG00000023790) XKR4 (ENSCHYG00000023732) ENSCHYG00000023702 SOX17 (ENSCHYG00000023663) MRPL15 (ENSCHYG00000023624) LYPLA1 (ENSCHYG00000023356) ENSCHYG00000022967 RGS20 (ENSCHYG00000022852) ATP6V1H (ENSCHYG00000022766) OPRK1 (ENSCHYG00000022698) NPBWR1 (ENSCHYG00000022686) RB1CC1 (ENSCHYG00000022542) #22 ALKAL1 (ENSCHYG00000022488) ENSCHYG00000022445 ENSCHYG00000022400 ST18 (ENSCHYG00000021991) #23 PCMTD1 (ENSCHYG00000021921) ##24 ENSCHYG00000021851 SNTG1 (ENSCHYG00000020644) #25 ENSCHYG00000020498 PPDPFL (ENSCHYG00000020457) SNAI2 (ENSCHYG00000020385) CLXN (ENSCHYG00000020174) UBE2V2 (ENSCHYG00000020085) #27 MCM4 (ENSCHYG00000019115) #28 PRKDC (ENSCHYG00000016168) ENSCHYG00000015631 Yarkand deer MODERN SPECIES 1323 ENSCHYG00000018619 ENSCHYG00000018572 NHS (ENSCHYG00000018180) REPS2 (ENSCHYG00000017518) SYAP1 (ENSCHYG00000017346) ENSCHYG00000017066 SCML2 (ENSCHYG00000016775) CDKL5 (ENSCHYG00000016442) RS1 (ENSCHYG00000016355) PPEF1 (ENSCHYG00000016044) ENSCHYG00000015917 ENSCHYG00000015895 PHKA2 (ENSCHYG00000014501) ADGRG2 (ENSCHYG00000025589) ENSCHYG00000025479 ENSCHYG00000025460 #22 MAP3K15 (ENSCHYG00000025350) SH3KBP1 (ENSCHYG00000024812) BCLAF3 (ENSCHYG00000024575) MAP7D2 (ENSCHYG00000024324) ENSCHYG00000024281 EIF1AX (ENSCHYG00000024205) RPS6KA3 (ENSCHYG00000023911) ENSCHYG00000023852 ENSCHYG00000023829 CNKSR2 (ENSCHYG00000023268) KLHL34 (ENSCHYG00000023198) SMPX (ENSCHYG00000023180) MBTPS2 (ENSCHYG00000023135) ENSCHYG00000023111 SMS (ENSCHYG00000022994) Percora_a ANCESTRAL SPECIES 23 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.u ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040.a ENSGT00940000154185.f ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00940000159905 #23 ENSGT00950000183032.A.a.g.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00390000014654 #30 ENSGT00940000163032 #29 ENSGT01030000235502 ENSGT00940000162302 ENSGT00940000165552 Bovidae ANCESTRAL SPECIES 22 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.u ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040.a ENSGT00940000154185.f ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00390000007918.g.b ENSGT00940000159905 #23 ENSGT00950000183032.A.a.g.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT00390000014654 #30 ENSGT00940000163032 #29 ENSGT01030000235502 ENSGT00940000162302 Caprinae ANCESTRAL SPECIES 18 ENSGT00940000160233 ENSGT00390000003248.a.a.a.b.u ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040.a ENSGT00940000154185.f ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000003289 ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00390000007918.g.b ENSGT00940000159905 #23 ENSGT00950000183032.A.a.g.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.b #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT01100000263504.a.a.yb ENSGT00390000014654 #30 ENSGT00940000163032 #29 ENSGT01030000235502 Rambouillet Sheep MODERN SPECIES 25 PLAG1 (ENSOARG00020025527) MOS (ENSOARG00020025525) RPS20 (ENSOARG00020025515) LYN (ENSOARG00020025503) TMEM68 (ENSOARG00020025479) XKR4 (ENSOARG00020025470) RP1 (ENSOARG00020025463) SOX17 (ENSOARG00020025457) MRPL15 (ENSOARG00020025448) LYPLA1 (ENSOARG00020025402) TCEA1 (ENSOARG00020025361) RGS20 (ENSOARG00020025341) ATP6V1H (ENSOARG00020025312) OPRK1 (ENSOARG00020025297) NPBWR1 (ENSOARG00020025293) RB1CC1 (ENSOARG00020025223) #22 ALKAL1 (ENSOARG00020025195) ENSOARG00020025180 ST18 (ENSOARG00020025124) #23 PCMTD1 (ENSOARG00020025108) ##24 SNTG1 (ENSOARG00020024728) #25 PPDPFL (ENSOARG00020024587) SNAI2 (ENSOARG00020024572) CLXN (ENSOARG00020024519) MCM4 (ENSOARG00020024419) #28 PRKDC (ENSOARG00020010704) ENSOARG00020009951 CEBPD (ENSOARG00020009877) #29 ENSOARG00020016702 ENSOARG00020016522 HAS2 (ENSOARG00020016454) Goat MODERN SPECIES 5 MOS (ENSCHIG00000011697) RPS20 (ENSCHIG00000017184) LYN (ENSCHIG00000022450) TGS1 (ENSCHIG00000013976) TMEM68 (ENSCHIG00000023378) XKR4 (ENSCHIG00000012863) RP1 (ENSCHIG00000024939) SOX17 (ENSCHIG00000020928) ENSCHIG00000000811 ENSCHIG00000009109 ENSCHIG00000022556 RGS20 (ENSCHIG00000006425) ATP6V1H (ENSCHIG00000016415) OPRK1 (ENSCHIG00000023230) NPBWR1 (ENSCHIG00000010898) RB1CC1 (ENSCHIG00000017614) #22 ENSCHIG00000027047 ENSCHIG00000015420 ST18 (ENSCHIG00000013632) #23 ENSCHIG00000024195 ##24 ENSCHIG00000011128 ##24 SNTG1 (ENSCHIG00000023177) #25 PPDPFL (ENSCHIG00000017544) SNAI2 (ENSCHIG00000024410) CLXN (ENSCHIG00000017174) ENSCHIG00000013718 #27 MCM4 (ENSCHIG00000018094) #28 PRKDC (ENSCHIG00000013822) ENSCHIG00000011570 SPIDR (ENSCHIG00000018290) #30 CEBPD (ENSCHIG00000010420) #29 Bovinae ANCESTRAL SPECIES 18 ENSGT00390000003248.a.a.a.b.u ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040.a ENSGT00940000154185.f.a ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000010130.f ENSGT00390000003289.g.a ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00390000002144.i.b ENSGT00390000007918.g.b ENSGT00940000159905 #23 ENSGT00950000183032.A.a.g.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT01100000263504.a.a.yb.fb.b ENSGT00390000014654 #30 ENSGT00940000163032 #29 Bos ANCESTRAL SPECIES 21 ENSGT00390000003248.a.a.a.b.u ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040.a ENSGT00940000154185.f.a ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000010130.f ENSGT00390000003289.g.a ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00390000002144.i.b ENSGT00390000007918.g.b ENSGT00940000159905 #23 ENSGT00950000183032.A.a.g.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT01100000263504.a.a.yb.fb.b ENSGT00390000014654 #30 ENSGT00940000163032 #29 Bos_b ANCESTRAL SPECIES 25 ENSGT00390000003248.a.a.a.b.u ENSGT00940000158011 ENSGT00390000018056 ENSGT00390000011782 ENSGT01070000253766.A.b ENSGT00940000154242.b ENSGT00940000156694 ENSGT00390000009040.a ENSGT00940000154185.f.a ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000010130.f ENSGT00390000003289.g.a ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00390000007918.g.b ENSGT00940000159905 #23 ENSGT00950000183032.A.a.g.a ##24 ENSGT00950000182863.B.a #25 ENSGT00390000009113.a.b ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT01100000263504.a.a.yb.fb.b ENSGT00390000014654 #30 ENSGT00940000163032 #29 ENSGT00960000186612.B.a.a.d Hybrid Bos Indicus MODERN SPECIES 5 LYN (ENSBIXG00005023239) TGS1 (ENSBIXG00005023257) TMEM68 (ENSBIXG00005023366) XKR4 (ENSBIXG00005023413) RP1 (ENSBIXG00005023448) SOX17 (ENSBIXG00005023546) ENSBIXG00005023590 ENSBIXG00005004065 TCEA1 (ENSBIXG00005023901) RGS20 (ENSBIXG00005004106) ENSBIXG00005023996 ENSBIXG00005004122 ENSBIXG00005024120 OPRK1 (ENSBIXG00005024194) NPBWR1 (ENSBIXG00005024209) RB1CC1 (ENSBIXG00005024270) #22 ALKAL1 (ENSBIXG00005024331) ENSBIXG00005024381 ST18 (ENSBIXG00005024438) #23 ENSBIXG00005004177 ENSBIXG00005024471 PCMTD1 (ENSBIXG00005004184) ##24 ENSBIXG00005004193 SNTG1 (ENSBIXG00005024969) #25 ENSBIXG00005025067 ENSBIXG00005025099 SNAI2 (ENSBIXG00005025145) CLXN (ENSBIXG00005025221) ENSBIXG00005025298 #27 MCM4 (ENSBIXG00005025814) #28 PRKDC (ENSBIXG00005026568) Cow MODERN SPECIES 5 LYN (ENSBTAG00000020034) TGS1 (ENSBTAG00000005898) TMEM68 (ENSBTAG00000005893) XKR4 (ENSBTAG00000044050) RP1 (ENSBTAG00000011203) SOX17 (ENSBTAG00000005748) ENSBTAG00000052277 MRPL15 (ENSBTAG00000001174) LYPLA1 (ENSBTAG00000004243) TCEA1 (ENSBTAG00000003460) RGS20 (ENSBTAG00000003454) ENSBTAG00000054835 ATP6V1H (ENSBTAG00000003450) OPRK1 (ENSBTAG00000000914) NPBWR1 (ENSBTAG00000016159) RB1CC1 (ENSBTAG00000000878) #22 ENSBTAG00000048814 ST18 (ENSBTAG00000005560) #23 PCMTD1 (ENSBTAG00000017492) ##24 SNTG1 (ENSBTAG00000002448) #25 ENSBTAG00000027760 PPDPFL (ENSBTAG00000038286) SNAI2 (ENSBTAG00000013227) CLXN (ENSBTAG00000008693) UBE2V2 (ENSBTAG00000023218) #27 MCM4 (ENSBTAG00000017021) #28 PRKDC (ENSBTAG00000017019) H3-5 (ENSBTAG00000017016) SPIDR (ENSBTAG00000044106) #30 CEBPD (ENSBTAG00000046307) #29 ENSBTAG00000040351 Bos_a ANCESTRAL SPECIES 92 ENSGT00940000154242.b ENSGT00390000009040.a ENSGT00940000154185.f.a ENSGT00940000155121 ENSGT00940000159123 ENSGT00390000010130.f ENSGT00390000003289.g.a ENSGT00940000157341 ENSGT00940000161936 ENSGT00390000015871 #22 ENSGT00940000159969.a ENSGT00390000002144.i.b ENSGT00390000007918.g.b ENSGT00940000159905 #23 ENSGT00950000183032.A.a.g.a ##24 ENSGT00950000182863.B.a #25 ENSGT00940000154511.b ENSGT00940000159968 ENSGT00740000115534.a.b.f.a.a #27 ENSGT01050000244824.A #28 ENSGT00940000155633.D ENSGT01100000263504.a.a.yb.fb.b ENSGT00390000014654 #30 ENSGT00940000162302 ENSGT00940000165552 Wild yak MODERN SPECIES 452 ENSBMUG00000013408 ENSBMUG00000013395 ENSBMUG00000013385 TCEA1 (ENSBMUG00000013369) RGS20 (ENSBMUG00000013345) ENSBMUG00000013322 ATP6V1H (ENSBMUG00000013251) OPRK1 (ENSBMUG00000013163) NPBWR1 (ENSBMUG00000013137) RB1CC1 (ENSBMUG00000013120) #22 ENSBMUG00000013083 ENSBMUG00000013069 ENSBMUG00000013053 ST18 (ENSBMUG00000013031) #23 PCMTD1 (ENSBMUG00000012986) ##24 ENSBMUG00000012936 SNTG1 (ENSBMUG00000011959) #25 ENSBMUG00000011359 SNAI2 (ENSBMUG00000011335) CLXN (ENSBMUG00000011311) UBE2V2 (ENSBMUG00000011242) #27 MCM4 (ENSBMUG00000011227) #28 PRKDC (ENSBMUG00000011197) ENSBMUG00000010962 SPIDR (ENSBMUG00000010938) #30 American bison MODERN SPECIES 3036 MOS (ENSBBBG00000004319) RPS20 (ENSBBBG00000017472) LYN (ENSBBBG00000017506) TGS1 (ENSBBBG00000017523) TMEM68 (ENSBBBG00000017572) XKR4 (ENSBBBG00000004357) RP1 (ENSBBBG00000008007) ENSBBBG00000017605 ENSBBBG00000008932 TCEA1 (ENSBBBG00000004377) RGS20 (ENSBBBG00000017756) ENSBBBG00000006782 ENSBBBG00000004389 OPRK1 (ENSBBBG00000017852) NPBWR1 (ENSBBBG00000017860) RB1CC1 (ENSBBBG00000017917) #22 ALKAL1 (ENSBBBG00000004408) ENSBBBG00000017946 ENSBBBG00000004417 ST18 (ENSBBBG00000017983) #23 ENSBBBG00000004427 ##24 SNTG1 (ENSBBBG00000018671) #25 PPDPFL (ENSBBBG00000018734) SNAI2 (ENSBBBG00000018743) CLXN (ENSBBBG00000018768) UBE2V2 (ENSBBBG00000018781) #27 MCM4 (ENSBBBG00000018801) #28 PRKDC (ENSBBBG00000004878) ENSBBBG00000019084 SPIDR (ENSBBBG00000019113) #30 ENSBBBG00000019149 Siberian musk deer MODERN SPECIES 181 ENSMMSG00000018541 LYN (ENSMMSG00000018689) TGS1 (ENSMMSG00000018818) TMEM68 (ENSMMSG00000018879) XKR4 (ENSMMSG00000018988) ENSMMSG00000019022 SOX17 (ENSMMSG00000019055) ENSMMSG00000019067 LYPLA1 (ENSMMSG00000019125) TCEA1 (ENSMMSG00000019249) RGS20 (ENSMMSG00000019413) ATP6V1H (ENSMMSG00000019499) OPRK1 (ENSMMSG00000019585) ENSMMSG00000019617 NPBWR1 (ENSMMSG00000019656) RB1CC1 (ENSMMSG00000019672) #22 ALKAL1 (ENSMMSG00000019751) ST18 (ENSMMSG00000019802) #23 ENSMMSG00000019886 ##24 SNTG1 (ENSMMSG00000020088) #25 Eulipotyphla ANCESTRAL SPECIES 2241 ENSGT00390000015871 #22 ENSGT00940000159969.a Common shrew MODERN SPECIES 1168 RB1CC1 (ENSSARG00000007746) #22 Hedgehog MODERN SPECIES 8131 RB1CC1 (ENSEEUG00000004287) #22 ALKAL1 (ENSEEUG00000004260) Elephant shark MODERN SPECIES 1635 mrpl15 (ENSCMIG00000015660) lypla1 (ENSCMIG00000015650) tcea1 (ENSCMIG00000015644) ENSCMIG00000015641 atp6v1h (ENSCMIG00000015618) ENSCMIG00000015603 ENSCMIG00000015602 RB1CC1 (ENSCMIG00000015561) #22 ENSCMIG00000015537 ENSCMIG00000015534 ST18 (ENSCMIG00000015375) #23 PCMTD1 (ENSCMIG00000015320) ##24 ENSCMIG00000015295 SNTG1 (ENSCMIG00000015258) #25 Cyclostomata DUPLICATION Cyclostomata ANCESTRAL SPECIES ENSGT00390000015871.a #22 Hagfish DUPLICATION Hagfish MODERN SPECIES 765 ENSEBUG00000014379 hm13 (ENSEBUG00000007997) ENSEBUG00000008641 atp6v1h (ENSEBUG00000010590) ENSEBUG00000013676 RPS20 (ENSEBUG00000011532) aar2 (ENSEBUG00000014225) ENSEBUG00000008535 ENSEBUG00000003786 ENSEBUG00000009157 ENSEBUG00000005197 ENSEBUG00000011602 ENSEBUG00000015339 ENSEBUG00000001046 ENSEBUG00000002735 ENSEBUG00000001762 #22 ENSEBUG00000014914 ENSEBUG00000006676 ENSEBUG00000004608 rad21b (ENSEBUG00000001142) eif3eb (ENSEBUG00000008365) ENSEBUG00000007516 ENSEBUG00000010163 ENSEBUG00000008033 ENSEBUG00000008808 ENSEBUG00000001627 ENSEBUG00000009386 ENSEBUG00000001774 ENSEBUG00000011386 ENSEBUG00000005785 ENSEBUG00000014354 Hagfish MODERN SPECIES 1313 sap30bp (ENSEBUG00000012147) klhl31 (ENSEBUG00000015291) rpl11 (ENSEBUG00000002312) pabpc4 (ENSEBUG00000000992) ENSEBUG00000004628 fabp7a (ENSEBUG00000011106) ENSEBUG00000001533 ASPH (ENSEBUG00000000512) ENSEBUG00000014829 ENSEBUG00000015276 ENSEBUG00000011817 ENSEBUG00000009408 #22 ENSEBUG00000014361 #22 ENSEBUG00000008023 polb (ENSEBUG00000013818) ENSEBUG00000006116 pcmtd2a (ENSEBUG00000013234) ##24 ENSEBUG00000000447 ENSEBUG00000006022 ENSEBUG00000013145 Cyclostomata ANCESTRAL SPECIES ENSGT00390000015871.b #22 Lamprey MODERN SPECIES 1297 ENSPMAG00000008219 ENSPMAG00000008226 #22 colec11 (ENSPMAG00000008249) nrbp1 (ENSPMAG00000008261) Hagfish MODERN SPECIES 1313 sap30bp (ENSEBUG00000012147) klhl31 (ENSEBUG00000015291) rpl11 (ENSEBUG00000002312) pabpc4 (ENSEBUG00000000992) ENSEBUG00000004628 fabp7a (ENSEBUG00000011106) ENSEBUG00000001533 ASPH (ENSEBUG00000000512) ENSEBUG00000014829 ENSEBUG00000015276 ENSEBUG00000011817 ENSEBUG00000009408 #22 ENSEBUG00000014361 #22 ENSEBUG00000008023 polb (ENSEBUG00000013818) ENSEBUG00000006116 pcmtd2a (ENSEBUG00000013234) ##24 ENSEBUG00000000447 ENSEBUG00000006022 ENSEBUG00000013145 Ciona ANCESTRAL SPECIES ENSGT00390000015871 #22 Ciona intestinalis MODERN SPECIES 603 ENSCING00000002103 ENSCING00000014698 ENSCING00000002108 #22 ENSCING00000023978 ENSCING00000015783 ENSCING00000002113 ENSCING00000002122 ENSCING00000014690 ENSCING00000014689 zf(c2h2)-35 (ENSCING00000002128) ENSCING00000002123 ENSCING00000002131 Ecdysozoa ANCESTRAL SPECIES ENSGT00390000015871 #22 Fruitfly MODERN SPECIES 19 Dph4 (FBgn0037350) RpL13A (FBgn0037351) CG31551 (FBgn0051551) CG31549 (FBgn0051549) CG12171 (FBgn0037354) CG31546 (FBgn0051546) CG31548 (FBgn0051548) CG12170 (FBgn0037356) MTA1-like (FBgn0027951) Sec23 (FBgn0262125) elm (FBgn0037358) MED27 (FBgn0037359) CG2182 (FBgn0037360) Wdr33 (FBgn0046222) Xe7 (FBgn0010772) Atg17 (FBgn0037363) #22 Rab23 (FBgn0037364) plx (FBgn0261261) CG2104 (FBgn0037365) cas (FBgn0004878) CG1239 (FBgn0037368) CG2100 (FBgn0037369) CG1236 (FBgn0037370) Sym (FBgn0037371) Madm (FBgn0027497) CG2091 (FBgn0037372) Sec8 (FBgn0266672) CG2082 (FBgn0027608) jagn (FBgn0037374) kat-60L1 (FBgn0037375) Hat1 (FBgn0037376) Caenorhabditis elegans MODERN SPECIES 6 unc-10 (WBGene00006750) lron-7 (WBGene00019351) K03A1.4 (WBGene00019352) sur-5 (WBGene00006351) his-38 (WBGene00001912) his-40 (WBGene00001914) spp-3 (WBGene00004988) spp-2 (WBGene00004987) spp-6 (WBGene00004991) spp-4 (WBGene00004989) spp-5 (WBGene00004990) T08A9.13 (WBGene00044442) sng-1 (WBGene00004912) ttr-59 (WBGene00020339) ttr-30 (WBGene00020335) epg-7 (WBGene00020334) #22 C07D8.6 (WBGene00015565) C07D8.5 (WBGene00015564) C56G3.2 (WBGene00016985) npr-8 (WBGene00016984) C10A4.6 (WBGene00015667) gad-2 (WBGene00015666) C10A4.13 (WBGene00206485) C10A4.10 (WBGene00050957) C10A4.4 (WBGene00015665) C10A4.3 (WBGene00015664) C10A4.2 (WBGene00015663) C10A4.7 (WBGene00015668) C10A4.1 (WBGene00015662) C10A4.9 (WBGene00045456) mnm-2 (WBGene00003380)