Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000157723 #22
Gnathostomata	ANCESTRAL SPECIES	265												ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32
Euteleostomi	ANCESTRAL SPECIES	62	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000165711	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000176900	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000158236	ENSGT00390000013215
Sarcopterygii	ANCESTRAL SPECIES	99	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000165711	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000176900	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000158236
Tetrapoda	ANCESTRAL SPECIES	95	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000158236
Amniota	ANCESTRAL SPECIES	1	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000163429.A
Mammalia	ANCESTRAL SPECIES	2	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000163429.A
Theria	ANCESTRAL SPECIES	4	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Eutheria	ANCESTRAL SPECIES	9	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.d #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Boreoeutheria	ANCESTRAL SPECIES	7	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Primates	ANCESTRAL SPECIES	5	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT00950000185143	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Simiiformes	ANCESTRAL SPECIES	5	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b #18	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.a #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a #17	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Hominoidea	ANCESTRAL SPECIES	4	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.a #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.h #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a #17	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.g #15	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Hominidae	ANCESTRAL SPECIES	5	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.a #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.g #15	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a #17	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.h #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.a #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.g #15	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a.a #17	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a.b ##19	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.h #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.a #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.g #15	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a.a #17	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.h #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Pan	ANCESTRAL SPECIES	5	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.a #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.g #15	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.h.a #16	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a.a #17	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.h.b #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000154295.y.b.f #23	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00390000005534.b.b.c.b.a.a.b.a.a.d.b.b
Chimpanzee	MODERN SPECIES	19	PPIL4 (ENSPTRG00000018692) #7	GINM1 (ENSPTRG00000018693) #8	KATNA1 (ENSPTRG00000018694) #9	LATS1 (ENSPTRG00000018696) #10	NUP43 (ENSPTRG00000018697) #11	PCMT1 (ENSPTRG00000018699) #12	LRP11 (ENSPTRG00000018700) #13	RAET1E (ENSPTRG00000022565) #14	RAET1G (ENSPTRG00000029377) #15	ENSPTRG00000052558 #16	ULBP1 (ENSPTRG00000043696) #17	ENSPTRG00000044735 #18	ULBP3 (ENSPTRG00000034286) #19	PPP1R14C (ENSPTRG00000023599) #20	IYD (ENSPTRG00000051321) #21	PLEKHG1 (ENSPTRG00000018709) #22	ENSPTRG00000044725 #23	ENSPTRG00000018710 #24	ENSPTRG00000049112 #25	ENSPTRG00000051736 #26	AKAP12 (ENSPTRG00000018711) #27	ZBTB2 (ENSPTRG00000018712) #28	RMND1 (ENSPTRG00000018713) #29	ARMT1 (ENSPTRG00000018714) #30	CCDC170 (ENSPTRG00000018715) #31	ESR1 (ENSPTRG00000018716) #32	SYNE1 (ENSPTRG00000018717) #33	MYCT1 (ENSPTRG00000018719) #34	VIP (ENSPTRG00000018720) #35	FBXO5 (ENSPTRG00000018721) #36	MTRF1L (ENSPTRG00000018722) #37
Bonobo	MODERN SPECIES	19	ENSPPAG00000039810	PPIL4 (ENSPPAG00000042154) #7	ENSPPAG00000027601 #8	KATNA1 (ENSPPAG00000042653) #9	LATS1 (ENSPPAG00000036080) #10	NUP43 (ENSPPAG00000042531) #11	ENSPPAG00000027167 #12	LRP11 (ENSPPAG00000010780) #13	RAET1E (ENSPPAG00000028551) #14	ENSPPAG00000014931 #15	ULBP1 (ENSPPAG00000041468) #17	ENSPPAG00000012588 #16	ULBP3 (ENSPPAG00000030872) #19	ENSPPAG00000038058 #20	IYD (ENSPPAG00000035207) #21	PLEKHG1 (ENSPPAG00000040411) #22	ENSPPAG00000038707 #23	MTHFD1L (ENSPPAG00000034031) #24	ENSPPAG00000029607 #25	AKAP12 (ENSPPAG00000027286) #27	ZBTB2 (ENSPPAG00000033109) #28	RMND1 (ENSPPAG00000034708) #29	ARMT1 (ENSPPAG00000030485) #30	CCDC170 (ENSPPAG00000043973) #31	ESR1 (ENSPPAG00000025747) #32	SYNE1 (ENSPPAG00000027499) #33	MYCT1 (ENSPPAG00000028230) #34	VIP (ENSPPAG00000031048) #35	FBXO5 (ENSPPAG00000017794) #36	MTRF1L (ENSPPAG00000031251) #37	RGS17 (ENSPPAG00000036399)
Human	MODERN SPECIES	18	PPIL4 (ENSG00000131013) #7	GINM1 (ENSG00000055211) #8	KATNA1 (ENSG00000186625) #9	LATS1 (ENSG00000131023) #10	NUP43 (ENSG00000120253) #11	PCMT1 (ENSG00000120265) #12	LRP11 (ENSG00000120256) #13	RAET1E (ENSG00000164520) #14	RAET1G (ENSG00000203722) #18	ULBP2 (ENSG00000131015) #18	ULBP1 (ENSG00000111981) #17	RAET1L (ENSG00000155918) #18	ULBP3 (ENSG00000131019) #19	PPP1R14C (ENSG00000198729) #20	IYD (ENSG00000009765) #21	PLEKHG1 (ENSG00000120278) #22	MTHFD1L (ENSG00000120254) #24	AKAP12 (ENSG00000131016) #27	ZBTB2 (ENSG00000181472) #28	RMND1 (ENSG00000155906) #29	ARMT1 (ENSG00000146476) #30	CCDC170 (ENSG00000120262) #31	ESR1 (ENSG00000091831) #32	SYNE1 (ENSG00000131018) #33	MYCT1 (ENSG00000120279) #34	VIP (ENSG00000146469) #35	FBXO5 (ENSG00000112029) #36	MTRF1L (ENSG00000112031) #37	RGS17 (ENSG00000091844)	OPRM1 (ENSG00000112038)	IPCEF1 (ENSG00000074706)
Gorilla	MODERN SPECIES	19	KATNA1 (ENSGGOG00000001123) #9	LATS1 (ENSGGOG00000000545) #10	ENSGGOG00000043276	ENSGGOG00000037154	NUP43 (ENSGGOG00000007299) #11	ENSGGOG00000042835 #12	LRP11 (ENSGGOG00000024974) #13	RAET1E (ENSGGOG00000009347) #14	ENSGGOG00000016690 #15	ULBP1 (ENSGGOG00000036889) #17	ENSGGOG00000007707 ##19	ENSGGOG00000007925 #18	ULBP3 (ENSGGOG00000003891) #19	ENSGGOG00000026573 #20	IYD (ENSGGOG00000036276) #21	PLEKHG1 (ENSGGOG00000014887) #22	MTHFD1L (ENSGGOG00000003642) #24	AKAP12 (ENSGGOG00000024737) #27	ZBTB2 (ENSGGOG00000010529) #28	RMND1 (ENSGGOG00000007148) #29	ARMT1 (ENSGGOG00000023947) #30	CCDC170 (ENSGGOG00000004497) #31	ESR1 (ENSGGOG00000009678) #32	SYNE1 (ENSGGOG00000014892) #33	ENSGGOG00000042786 #34	VIP (ENSGGOG00000028135) #35	FBXO5 (ENSGGOG00000001606) #36	MTRF1L (ENSGGOG00000022451) #37	RGS17 (ENSGGOG00000026033)	OPRM1 (ENSGGOG00000024312)	IPCEF1 (ENSGGOG00000015698)
Orangutan	MODERN SPECIES	19	PPIL4 (ENSPPYG00000029525) #7	GINM1 (ENSPPYG00000017088) #8	KATNA1 (ENSPPYG00000017090) #9	LATS1 (ENSPPYG00000017091) #10	NUP43 (ENSPPYG00000017092) #11	PCMT1 (ENSPPYG00000032523) #12	LRP11 (ENSPPYG00000017096) #13	RAET1E (ENSPPYG00000017097) #14	ENSPPYG00000017098 #15	ENSPPYG00000017099 #15	ULBP1 (ENSPPYG00000017100) #17	ENSPPYG00000017101 #15	ULBP3 (ENSPPYG00000017268) #19	PPP1R14C (ENSPPYG00000017102) #20	IYD (ENSPPYG00000017103) #21	PLEKHG1 (ENSPPYG00000017104) #22	MTHFD1L (ENSPPYG00000017105) #24	AKAP12 (ENSPPYG00000017106) #27	ZBTB2 (ENSPPYG00000017107) #28	RMND1 (ENSPPYG00000017108) #29	ARMT1 (ENSPPYG00000017109) #30	ENSPPYG00000017110	CCDC170 (ENSPPYG00000017111) #31	ESR1 (ENSPPYG00000017112) #32	SYNE1 (ENSPPYG00000017113) #33	MYCT1 (ENSPPYG00000017114) #34	VIP (ENSPPYG00000017115) #35	FBXO5 (ENSPPYG00000017116) #36	MTRF1L (ENSPPYG00000017117) #37	RGS17 (ENSPPYG00000017118)	OPRM1 (ENSPPYG00000029500)
Gibbon	MODERN SPECIES	18	ENSNLEG00000015313	PPIL4 (ENSNLEG00000015316) #7	GINM1 (ENSNLEG00000035797) #8	KATNA1 (ENSNLEG00000015324) #9	LATS1 (ENSNLEG00000015331) #10	NUP43 (ENSNLEG00000015334) #11	ENSNLEG00000029634 #12	ENSNLEG00000034380 #13	RAET1E (ENSNLEG00000015350) #14	ENSNLEG00000030810 #18	ULBP1 (ENSNLEG00000015354) #17	ULBP3 (ENSNLEG00000015356) #19	ENSNLEG00000030972	PPP1R14C (ENSNLEG00000015360) #20	IYD (ENSNLEG00000015363) #21	PLEKHG1 (ENSNLEG00000015370) #22	MTHFD1L (ENSNLEG00000015374) #24	ENSNLEG00000035383	ENSNLEG00000035803 #25	AKAP12 (ENSNLEG00000015379) #27	ZBTB2 (ENSNLEG00000015384) #28	RMND1 (ENSNLEG00000015387) #29	ARMT1 (ENSNLEG00000015395) #30	CCDC170 (ENSNLEG00000015396) #31	ESR1 (ENSNLEG00000015408) #32	SYNE1 (ENSNLEG00000015419) #33	ENSNLEG00000035305 #34	VIP (ENSNLEG00000015432) #35	FBXO5 (ENSNLEG00000015443) #36	MTRF1L (ENSNLEG00000015450) #37	RGS17 (ENSNLEG00000015461)
Cercopithecidae	ANCESTRAL SPECIES	34								ENSGT01100000263517.b.d.m.a.a.a.a.c.r ##19	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.f #19	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.b #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a.c.b.a #17	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.e #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00940000153336.e.a.a.a.b.b	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683.l.b #37	ENSGT00940000155393.d	ENSGT00940000158236
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.a #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.b #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a.b #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a.c.b.a #17	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a.c.b.b #17	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.e #18	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.b ##19	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.f #19	ENSGT00980000198488.m.a.a.a.a.k.a.d.b	ENSGT00980000198488.n	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a.c.a #17	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a.a #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.e #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00940000153336.e.a.a.a.b.b	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683.l.b #37	ENSGT00940000155393.d	ENSGT00940000158236
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00900000143690	ENSGT00390000004803.g #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.a #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.b #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a.b #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a.c.b.a #17	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a.a.a #18	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.b ##19	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.f #19	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a.a.b #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.e.a #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00860000135570.b	ENSGT00940000153336.e.a.a.a.b.b	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b.g.a #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683.l.b #37	ENSGT00940000155393.d
Cercopithecinae_b	ANCESTRAL SPECIES	17	ENSGT00390000004803.g #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.a #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.b #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a.b #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a.c.b.a #17	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a.a.a #18	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.b ##19	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.f #19	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a.d #17	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a.a.b #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.e.a #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00860000135570.b	ENSGT00940000153336.e.a.a.a.b.b	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b.g.a #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683.l.b #37	ENSGT00940000155393.d
Olive baboon	MODERN SPECIES	16	RAET1E (ENSPANG00000022187) #14	ENSPANG00000023895 #18	ENSPANG00000031738 #18	ENSPANG00000051179 #17	ENSPANG00000024446 #17	ENSPANG00000042861	ENSPANG00000050508 #17	ENSPANG00000030194 #18	ENSPANG00000050994 ##19	ENSPANG00000047095	ENSPANG00000013265 #18	ULBP3 (ENSPANG00000006926) #19	PPP1R14C (ENSPANG00000048658) #20	IYD (ENSPANG00000026300) #21	ENSPANG00000038252	PLEKHG1 (ENSPANG00000009444) #22	MTHFD1L (ENSPANG00000024767) #24	AKAP12 (ENSPANG00000018393) #27	ZBTB2 (ENSPANG00000046901) #28	RMND1 (ENSPANG00000018391) #29	ARMT1 (ENSPANG00000006927) #30	CCDC170 (ENSPANG00000001110) #31	ENSPANG00000050683	ESR1 (ENSPANG00000020729) #32	SYNE1 (ENSPANG00000024958) #33	MYCT1 (ENSPANG00000026234) #34	VIP (ENSPANG00000004077) #35	FBXO5 (ENSPANG00000046787) #36	MTRF1L (ENSPANG00000033150) #37	RGS17 (ENSPANG00000022190)	ENSPANG00000050384
Cercopithecinae_d	ANCESTRAL SPECIES	35	ENSGT00390000004803.g #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.a #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.b #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a.b #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a.d #17	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a.c.b.a #17	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a.a.a #18	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.b ##19	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.f #19	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a.a.b #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.e.a #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00860000135570.b	ENSGT00940000153336.e.a.a.a.b.b	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b.g.a #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683.l.b #37	ENSGT00940000155393.d
Drill	MODERN SPECIES	988									ENSMLEG00000035766 #18	ENSMLEG00000041030 ##19	ENSMLEG00000035901 #19	ENSMLEG00000040201 #18	ENSMLEG00000043858 #19	PPP1R14C (ENSMLEG00000017778) #20	IYD (ENSMLEG00000034675) #21	PLEKHG1 (ENSMLEG00000035613) #22	MTHFD1L (ENSMLEG00000022231) #24	ENSMLEG00000032974	ENSMLEG00000029149	AKAP12 (ENSMLEG00000040090) #27	ZBTB2 (ENSMLEG00000044102) #28	RMND1 (ENSMLEG00000030164) #29	ENSMLEG00000041144 #30	CCDC170 (ENSMLEG00000031341) #31
Sooty mangabey	MODERN SPECIES	139	LRP11 (ENSCATG00000030600) #13	RAET1E (ENSCATG00000016606) #14	ENSCATG00000035394 #18	ENSCATG00000028977 #18	ENSCATG00000033518 #17	ENSCATG00000041114 #17	ENSCATG00000043854 #18	ENSCATG00000034417 #17	ENSCATG00000043944 #18	ENSCATG00000032541 ##19	ENSCATG00000036127 #19	ENSCATG00000036981 #18	ENSCATG00000012147 #19	PPP1R14C (ENSCATG00000033340) #20	IYD (ENSCATG00000043048) #21	PLEKHG1 (ENSCATG00000037764) #22	MTHFD1L (ENSCATG00000042071) #24	ENSCATG00000041374	ENSCATG00000042437	AKAP12 (ENSCATG00000029672) #27	ZBTB2 (ENSCATG00000031949) #28	RMND1 (ENSCATG00000032389) #29	ARMT1 (ENSCATG00000043831) #30	CCDC170 (ENSCATG00000031654) #31	ESR1 (ENSCATG00000030182) #32	SYNE1 (ENSCATG00000040903) #33	MYCT1 (ENSCATG00000032119) #34	VIP (ENSCATG00000032792) #35	FBXO5 (ENSCATG00000045339) #36	ENSCATG00000035276 #37	RGS17 (ENSCATG00000040739)
Macaca	ANCESTRAL SPECIES	9	ENSGT00390000004803.g #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.a #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.b #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a.b #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a.c.b.a #17	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a.c.a #17	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a.a.a #18	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.b ##19	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.f #19	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a.a.b #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.e.a #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00860000135570.b	ENSGT00940000153336.e.a.a.a.b.b	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b.g.a #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683.l.b #37	ENSGT00940000155393.d
Pig-tailed macaque	MODERN SPECIES	152	ENSMNEG00000040182	ENSMNEG00000037239 #11	PCMT1 (ENSMNEG00000039792) #12	LRP11 (ENSMNEG00000032784) #13	RAET1E (ENSMNEG00000033358) #14	ENSMNEG00000033789 #18	ENSMNEG00000033916 #18	ULBP1 (ENSMNEG00000036370) #17	ENSMNEG00000037543 #18	ENSMNEG00000030286 ##19	ENSMNEG00000029044 #19	ENSMNEG00000041766 #18	ENSMNEG00000022408 #19	PPP1R14C (ENSMNEG00000029660) #20	IYD (ENSMNEG00000035661) #21	PLEKHG1 (ENSMNEG00000027854) #22	MTHFD1L (ENSMNEG00000039466) #24	ENSMNEG00000028201	ENSMNEG00000027441	AKAP12 (ENSMNEG00000037368) #27	ZBTB2 (ENSMNEG00000043530) #28	RMND1 (ENSMNEG00000039525) #29	ARMT1 (ENSMNEG00000027559) #30	CCDC170 (ENSMNEG00000021323) #31	ESR1 (ENSMNEG00000033178) #32	SYNE1 (ENSMNEG00000030564) #33	MYCT1 (ENSMNEG00000044362) #34	VIP (ENSMNEG00000027106) #35	FBXO5 (ENSMNEG00000036254) #36	ENSMNEG00000030044 #37	RGS17 (ENSMNEG00000039093)
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.a #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.b #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a.b #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a.c.b.a #17	ENSGT00980000198488.n	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a.c.a #17	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a.a.a #18	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.b ##19	ENSGT00950000185143	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.f #19	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a.a.b #18	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT01100000263539.b.a.a.a.a.a.b.b.a.a.a.a.a.b.a.b.b.a.a.a.a.b	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b.g.a #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT01050000244986.a.b.a.a	ENSGT00530000063692.b #36	ENSGT00940000155683.l.b #37	ENSGT00940000155393.d
Rhesus	MODERN SPECIES	14	PCMT1 (ENSMMUG00000029462) #12	LRP11 (ENSMMUG00000029463) #13	RAET1E (ENSMMUG00000003953) #14	ENSMMUG00000053480 #18	ENSMMUG00000029465 #18	ENSMMUG00000063631 #17	ENSMMUG00000000923	ENSMMUG00000065098 #17	ENSMMUG00000003951 #18	ENSMMUG00000052092	ENSMMUG00000063037	ULBP3 (ENSMMUG00000047033) #19	ENSMMUG00000029466 #18	PPP1R14C (ENSMMUG00000022110) #20	IYD (ENSMMUG00000010802) #21	PLEKHG1 (ENSMMUG00000019772) #22	MTHFD1L (ENSMMUG00000019774) #24	AKAP12 (ENSMMUG00000023265) #27	ENSMMUG00000058018	ZBTB2 (ENSMMUG00000029475) #28	ENSMMUG00000050174	RMND1 (ENSMMUG00000018342) #29	ARMT1 (ENSMMUG00000060940) #30	CCDC170 (ENSMMUG00000018346) #31	ESR1 (ENSMMUG00000019045) #32	SYNE1 (ENSMMUG00000019048) #33	MYCT1 (ENSMMUG00000019073) #34	VIP (ENSMMUG00000019074) #35	ENSMMUG00000058069	FBXO5 (ENSMMUG00000019076) #36	MTRF1L (ENSMMUG00000020178) #37
Crab-eating macaque	MODERN SPECIES	14	ENSMFAG00000043069 #11	PCMT1 (ENSMFAG00000040746) #12	ENSMFAG00000058722 #13	RAET1E (ENSMFAG00000001578) #14	ENSMFAG00000026933 #18	ENSMFAG00000062093 #18	ENSMFAG00000044948 #17	ENSMFAG00000032584	ENSMFAG00000065712 #17	ENSMFAG00000039565 #18	ENSMFAG00000042568 ##19	ULBP3 (ENSMFAG00000002019) #19	ENSMFAG00000042333 #18	PPP1R14C (ENSMFAG00000001889) #20	IYD (ENSMFAG00000031023) #21	PLEKHG1 (ENSMFAG00000043598) #22	MTHFD1L (ENSMFAG00000031281) #24	ENSMFAG00000052108	ENSMFAG00000063261	ENSMFAG00000063226	AKAP12 (ENSMFAG00000039897) #27	ZBTB2 (ENSMFAG00000031487) #28	RMND1 (ENSMFAG00000034583) #29	ENSMFAG00000035719 #30	CCDC170 (ENSMFAG00000034314) #31	ESR1 (ENSMFAG00000033966) #32	SYNE1 (ENSMFAG00000037479) #33	ENSMFAG00000057449	ENSMFAG00000057221	ENSMFAG00000063235	MYCT1 (ENSMFAG00000055463) #34
Vervet Monkey	MODERN SPECIES	4	COQ3 (ENSCSAG00000014581)	FAXC (ENSCSAG00000014566)	FBXL4 (ENSCSAG00000014559)	POU3F2 (ENSCSAG00000018978)	ENSCSAG00000018979	MMS22L (ENSCSAG00000014547)	KLHL32 (ENSCSAG00000014531)	NDUFAF4 (ENSCSAG00000014517)	GPR63 (ENSCSAG00000018980)	ENSCSAG00000014508	FHL5 (ENSCSAG00000014491)	UFL1 (ENSCSAG00000014473)	ULBP3 (ENSCSAG00000014456) #19	PPP1R14C (ENSCSAG00000014450) #20	IYD (ENSCSAG00000014444) #21	PLEKHG1 (ENSCSAG00000014433) #22	MTHFD1L (ENSCSAG00000014394) #24	ENSCSAG00000014290	AKAP12 (ENSCSAG00000014270) #27	ZBTB2 (ENSCSAG00000014259) #28	RMND1 (ENSCSAG00000014250) #29	ARMT1 (ENSCSAG00000014244) #30	CCDC170 (ENSCSAG00000014238) #31	ESR1 (ENSCSAG00000014236) #32	SYNE1 (ENSCSAG00000014028) #33	ENSCSAG00000018981	MYCT1 (ENSCSAG00000013534) #34	VIP (ENSCSAG00000013530) #35	FBXO5 (ENSCSAG00000013521) #36	MTRF1L (ENSCSAG00000013511) #37	RGS17 (ENSCSAG00000013490)
Rhinopithecus	ANCESTRAL SPECIES	298									ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.b #18	ENSGT01100000263517.b.d.m.a.a.a.a.c.r ##19	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.f #19	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.b #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.e #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00940000153336.e.a.a.a.b.b	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35
Golden snub-nosed monkey	MODERN SPECIES	2440									ENSRROG00000040376 #18	ENSRROG00000043406 ##19	ENSRROG00000045078 #19	ENSRROG00000027630 #18	ENSRROG00000010004 #19	PPP1R14C (ENSRROG00000029040) #20	IYD (ENSRROG00000044909) #21	PLEKHG1 (ENSRROG00000044362) #22	MTHFD1L (ENSRROG00000030571) #24	ENSRROG00000030278	AKAP12 (ENSRROG00000038530) #27	ZBTB2 (ENSRROG00000041204) #28	RMND1 (ENSRROG00000036148) #29	ARMT1 (ENSRROG00000007841) #30	CCDC170 (ENSRROG00000039988) #31	ENSRROG00000045062 #32
Black snub-nosed monkey	MODERN SPECIES	873									ENSRBIG00000035145 #18	ENSRBIG00000000894 ##19	ENSRBIG00000031095 #19	ENSRBIG00000028119 #18	ENSRBIG00000039779 #19	PPP1R14C (ENSRBIG00000034753) #20	IYD (ENSRBIG00000011296) #21	PLEKHG1 (ENSRBIG00000009483) #22	MTHFD1L (ENSRBIG00000042332) #24	ENSRBIG00000038114	AKAP12 (ENSRBIG00000017303) #27	ZBTB2 (ENSRBIG00000031111) #28	RMND1 (ENSRBIG00000036401) #29	ARMT1 (ENSRBIG00000029058) #30	ESR1 (ENSRBIG00000009095) #32	ENSRBIG00000006739 #33	ENSRBIG00000032089
Platyrrhini	ANCESTRAL SPECIES	2	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008099.w.b.a.b	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00930000151026.h	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d.db	ENSGT00940000158236
Cebidae	ANCESTRAL SPECIES	5	ENSGT00940000156283 #7	ENSGT00390000008099.w.b.a.b	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b.c.a #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.a #19	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00930000151026.h	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d.db	ENSGT00940000158236
Cebidae_a	ANCESTRAL SPECIES	26	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b.c.a #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.a #19	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00930000151026.h	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d.db	ENSGT00940000158236
Bolivian squirrel monkey	MODERN SPECIES	227	ENSSBOG00000035142	PPIL4 (ENSSBOG00000004498) #7	ENSSBOG00000020020	GINM1 (ENSSBOG00000025996) #8	KATNA1 (ENSSBOG00000024196) #9	LATS1 (ENSSBOG00000021131) #10	NUP43 (ENSSBOG00000026083) #11	PCMT1 (ENSSBOG00000020341) #12	ENSSBOG00000012890	LRP11 (ENSSBOG00000022204) #13	ENSSBOG00000012710 #18	ENSSBOG00000034441	ULBP3 (ENSSBOG00000032354) #19	PPP1R14C (ENSSBOG00000028293) #20	IYD (ENSSBOG00000026146) #21	PLEKHG1 (ENSSBOG00000022607) #22	MTHFD1L (ENSSBOG00000024137) #24	AKAP12 (ENSSBOG00000029667) #27	ZBTB2 (ENSSBOG00000024551) #28	ENSSBOG00000020712	RMND1 (ENSSBOG00000021941) #29	ARMT1 (ENSSBOG00000019971) #30	CCDC170 (ENSSBOG00000026119) #31	ENSSBOG00000029729 #32
Capuchin	MODERN SPECIES	6															IYD (ENSCCAG00000036983) #21	PLEKHG1 (ENSCCAG00000027481) #22	MTHFD1L (ENSCCAG00000033752) #24	AKAP12 (ENSCCAG00000030534) #27	ZBTB2 (ENSCCAG00000029241) #28	RMND1 (ENSCCAG00000036014) #29	ARMT1 (ENSCCAG00000027013) #30	CCDC170 (ENSCCAG00000035936) #31	ENSCCAG00000036007	ENSCCAG00000023199	ESR1 (ENSCCAG00000030983) #32	SYNE1 (ENSCCAG00000034147) #33	MYCT1 (ENSCCAG00000031493) #34	VIP (ENSCCAG00000034128) #35	FBXO5 (ENSCCAG00000035526) #36	MTRF1L (ENSCCAG00000035144) #37	RGS17 (ENSCCAG00000030080)
Marmoset	MODERN SPECIES	16	GINM1 (ENSCJAG00000019634) #8	ENSCJAG00000070682	KATNA1 (ENSCJAG00000019640) #9	ENSCJAG00000078434	LATS1 (ENSCJAG00000009197) #10	NUP43 (ENSCJAG00000009221) #11	ENSCJAG00000009230 #12	LRP11 (ENSCJAG00000009284) #13	ENSCJAG00000060913	ENSCJAG00000021540 #14	ENSCJAG00000077951 #19	ENSCJAG00000013469 #19	ENSCJAG00000084847 #18	ENSCJAG00000077421 #20	IYD (ENSCJAG00000013438) #21	PLEKHG1 (ENSCJAG00000013414) #22	MTHFD1L (ENSCJAG00000013404) #24	AKAP12 (ENSCJAG00000013402) #27	ZBTB2 (ENSCJAG00000057010) #28	RMND1 (ENSCJAG00000013350) #29	ARMT1 (ENSCJAG00000013343) #30	CCDC170 (ENSCJAG00000013339) #31	ESR1 (ENSCJAG00000013293) #32	SYNE1 (ENSCJAG00000012842) #33	ENSCJAG00000073970	ENSCJAG00000083311	VIP (ENSCJAG00000012816) #35	FBXO5 (ENSCJAG00000012799) #36	MTRF1L (ENSCJAG00000044179) #37	RGS17 (ENSCJAG00000012783)	ENSCJAG00000084075
Mas night monkey	MODERN SPECIES	265	ENSANAG00000019496	GINM1 (ENSANAG00000031958) #8	KATNA1 (ENSANAG00000037899) #9	LATS1 (ENSANAG00000035394) #10	NUP43 (ENSANAG00000029616) #11	PCMT1 (ENSANAG00000022532) #12	LRP11 (ENSANAG00000038127) #13	RAET1E (ENSANAG00000000268) #14	ENSANAG00000026085 #18	ENSANAG00000033944 #19	ENSANAG00000036412 #18	ENSANAG00000024161	ENSANAG00000022159 #19	PPP1R14C (ENSANAG00000020628) #20	IYD (ENSANAG00000029610) #21	PLEKHG1 (ENSANAG00000027450) #22	MTHFD1L (ENSANAG00000020601) #24	ENSANAG00000028041	AKAP12 (ENSANAG00000033578) #27	ZBTB2 (ENSANAG00000035402) #28	RMND1 (ENSANAG00000029850) #29	ARMT1 (ENSANAG00000027746) #30	CCDC170 (ENSANAG00000034546) #31	ESR1 (ENSANAG00000033920) #32	ENSANAG00000032083	SYNE1 (ENSANAG00000028713) #33	MYCT1 (ENSANAG00000028766) #34	VIP (ENSANAG00000033466) #35	ENSANAG00000026755	FBXO5 (ENSANAG00000000307) #36	MTRF1L (ENSANAG00000007078) #37
Tarsier	MODERN SPECIES	7111																PLEKHG1 (ENSTSYG00000012891) #22	ENSTSYG00000028060 #24	ENSTSYG00000026428	SLC45A3 (ENSTSYG00000010698)	ELK4 (ENSTSYG00000012631)	MFSD4A (ENSTSYG00000012613)	CDK18 (ENSTSYG00000006079)	LEMD1 (ENSTSYG00000013708)	KLHDC8A (ENSTSYG00000013270)	NUAK2 (ENSTSYG00000033748)
Strepsirrhini	ANCESTRAL SPECIES	7	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b #18	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Lemuriformes	ANCESTRAL SPECIES	3	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.a #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.b #18	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Lemuriformes_a	ANCESTRAL SPECIES	28	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.a #18	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.b #18	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Coquerels sifaka	MODERN SPECIES	633	UST (ENSPCOG00000021446)	TAB2 (ENSPCOG00000023142)	ZC3H12D (ENSPCOG00000017645)	PPIL4 (ENSPCOG00000016997) #7	GINM1 (ENSPCOG00000005553) #8	KATNA1 (ENSPCOG00000020880) #9	ENSPCOG00000026729	LATS1 (ENSPCOG00000018478) #10	NUP43 (ENSPCOG00000027486) #11	PCMT1 (ENSPCOG00000019203) #12	LRP11 (ENSPCOG00000017776) #13	ENSPCOG00000027781 #18	ENSPCOG00000026119 #18	PPP1R14C (ENSPCOG00000015939) #20	IYD (ENSPCOG00000026393) #21	PLEKHG1 (ENSPCOG00000020861) #22	MTHFD1L (ENSPCOG00000001632) #24	AKAP12 (ENSPCOG00000016860) #27	ZBTB2 (ENSPCOG00000000698) #28	RMND1 (ENSPCOG00000014323) #29	ARMT1 (ENSPCOG00000022613) #30
Greater bamboo lemur	MODERN SPECIES	662	SAMD5 (ENSPSMG00000019299)	SASH1 (ENSPSMG00000019391)	UST (ENSPSMG00000019453)	TAB2 (ENSPSMG00000019496)	ZC3H12D (ENSPSMG00000019522)	PPIL4 (ENSPSMG00000019538) #7	GINM1 (ENSPSMG00000019547) #8	KATNA1 (ENSPSMG00000019600) #9	LATS1 (ENSPSMG00000019622) #10	NUP43 (ENSPSMG00000019639) #11	PCMT1 (ENSPSMG00000019845) #12	LRP11 (ENSPSMG00000019915) #13	ENSPSMG00000019973 #18	PPP1R14C (ENSPSMG00000019988) #20	IYD (ENSPSMG00000020030) #21	PLEKHG1 (ENSPSMG00000020047) #22	MTHFD1L (ENSPSMG00000020197) #24	AKAP12 (ENSPSMG00000020300) #27	ZBTB2 (ENSPSMG00000020305) #28	RMND1 (ENSPSMG00000020327) #29	ARMT1 (ENSPSMG00000020363) #30	CCDC170 (ENSPSMG00000020376) #31	ENSPSMG00000020377	ESR1 (ENSPSMG00000020487) #32	SYNE1 (ENSPSMG00000021005) #33	MYCT1 (ENSPSMG00000021158) #34	VIP (ENSPSMG00000021172) #35	FBXO5 (ENSPSMG00000021196) #36	MTRF1L (ENSPSMG00000021227) #37	RGS17 (ENSPSMG00000021243)	ENSPSMG00000021248
Mouse lemur	MODERN SPECIES	28	UST (ENSMICG00000014507)	TAB2 (ENSMICG00000027001)	ZC3H12D (ENSMICG00000044838)	PPIL4 (ENSMICG00000006287) #7	GINM1 (ENSMICG00000006295) #8	KATNA1 (ENSMICG00000006299) #9	LATS1 (ENSMICG00000006305) #10	NUP43 (ENSMICG00000006312) #11	PCMT1 (ENSMICG00000006318) #12	LRP11 (ENSMICG00000006322) #13	ENSMICG00000042667 #18	PPP1R14C (ENSMICG00000038749) #20	ENSMICG00000045223	ENSMICG00000026491	IYD (ENSMICG00000004582) #21	PLEKHG1 (ENSMICG00000004593) #22	MTHFD1L (ENSMICG00000004610) #24	AKAP12 (ENSMICG00000034625) #27	ZBTB2 (ENSMICG00000027366) #28	RMND1 (ENSMICG00000010583) #29	ARMT1 (ENSMICG00000047928) #30	CCDC170 (ENSMICG00000029885) #31	ESR1 (ENSMICG00000007592) #32	SYNE1 (ENSMICG00000007620) #33	ENSMICG00000042037	MYCT1 (ENSMICG00000036362) #34	VIP (ENSMICG00000035122) #35	ENSMICG00000032018	FBXO5 (ENSMICG00000003809) #36	MTRF1L (ENSMICG00000003811) #37	RGS17 (ENSMICG00000003816)
Bushbaby	MODERN SPECIES	241													ENSOGAG00000025001 #18	PPP1R14C (ENSOGAG00000009514) #20	IYD (ENSOGAG00000006759) #21	PLEKHG1 (ENSOGAG00000033661) #22	MTHFD1L (ENSOGAG00000011273) #24	AKAP12 (ENSOGAG00000011277) #27	ZBTB2 (ENSOGAG00000005262) #28	RMND1 (ENSOGAG00000005263) #29	ARMT1 (ENSOGAG00000010684) #30	CCDC170 (ENSOGAG00000006312) #31	ESR1 (ENSOGAG00000012580) #32	SYNE1 (ENSOGAG00000012587) #33	MYCT1 (ENSOGAG00000005357) #34	VIP (ENSOGAG00000006513) #35	FBXO5 (ENSOGAG00000006519) #36	MTRF1L (ENSOGAG00000006521) #37	RGS17 (ENSOGAG00000006526)	OPRM1 (ENSOGAG00000011506)	IPCEF1 (ENSOGAG00000011510)
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Tree shrew	MODERN SPECIES	860																PLEKHG1 (ENSTBEG00000016460) #22
Glires	ANCESTRAL SPECIES	5	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Lagomorpha	ANCESTRAL SPECIES	64														ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Rabbit	MODERN SPECIES	3	GRM1 (ENSOCUG00000006898)	ENSOCUG00000033708	ENSOCUG00000029781	ENSOCUG00000026403	ENSOCUG00000030379	ADGB (ENSOCUG00000021202)	STXBP5 (ENSOCUG00000005905)	ENSOCUG00000034641	ENSOCUG00000030086	ENSOCUG00000031631	ENSOCUG00000023412	SASH1 (ENSOCUG00000013851)	ENSOCUG00000027879 #19	ENSOCUG00000013406 #19	IYD (ENSOCUG00000013408) #21	PLEKHG1 (ENSOCUG00000016898) #22	MTHFD1L (ENSOCUG00000002781) #24	AKAP12 (ENSOCUG00000002673) #27	ZBTB2 (ENSOCUG00000022931) #28	RMND1 (ENSOCUG00000002509) #29	ARMT1 (ENSOCUG00000002519) #30	ENSOCUG00000036064	CCDC170 (ENSOCUG00000013530) #31	ENSOCUG00000022327	ESR1 (ENSOCUG00000004829) #32	SYNE1 (ENSOCUG00000023878) #33	ENSOCUG00000038464	MYCT1 (ENSOCUG00000017753) #34	VIP (ENSOCUG00000000513) #35	FBXO5 (ENSOCUG00000000061) #36	ENSOCUG00000000063 #37
Pika	MODERN SPECIES	617																PLEKHG1 (ENSOPRG00000010816) #22	MTHFD1L (ENSOPRG00000010844) #24
Rodentia	ANCESTRAL SPECIES	6	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Marmotini	ANCESTRAL SPECIES	11	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Marmotini_b	ANCESTRAL SPECIES	56	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157838.c.c	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Arctic ground squirrel	MODERN SPECIES	219														ENSUPAG00010013564 #20	IYD (ENSUPAG00010013543) #21	PLEKHG1 (ENSUPAG00010013492) #22	MTHFD1L (ENSUPAG00010013390) #24	AKAP12 (ENSUPAG00010013348) #27	ZBTB2 (ENSUPAG00010013345) #28	RMND1 (ENSUPAG00010013328) #29	ARMT1 (ENSUPAG00010013297) #30	CCDC170 (ENSUPAG00010013267) #31	ESR1 (ENSUPAG00010013233) #32	SYNE1 (ENSUPAG00010012988) #33	MYCT1 (ENSUPAG00010012980) #34	VIP (ENSUPAG00010012967) #35	FBXO5 (ENSUPAG00010012958) #36	MTRF1L (ENSUPAG00010012945) #37	RGS17 (ENSUPAG00010012932)
Squirrel	MODERN SPECIES	89	UST (ENSSTOG00000003436)	TAB2 (ENSSTOG00000020798)	ZC3H12D (ENSSTOG00000013975)	PPIL4 (ENSSTOG00000013980) #7	GINM1 (ENSSTOG00000013991) #8	KATNA1 (ENSSTOG00000013998) #9	ENSSTOG00000023820	LATS1 (ENSSTOG00000013443) #10	NUP43 (ENSSTOG00000013449) #11	PCMT1 (ENSSTOG00000024407) #12	LRP11 (ENSSTOG00000000512) #13	ENSSTOG00000001385 #19	ENSSTOG00000029925	PPP1R14C (ENSSTOG00000002019) #20	IYD (ENSSTOG00000002022) #21	PLEKHG1 (ENSSTOG00000010912) #22	MTHFD1L (ENSSTOG00000010921) #24	AKAP12 (ENSSTOG00000029201) #27	ZBTB2 (ENSSTOG00000021611) #28	RMND1 (ENSSTOG00000013141) #29	ARMT1 (ENSSTOG00000013153) #30	CCDC170 (ENSSTOG00000013161) #31	ESR1 (ENSSTOG00000006748) #32	ENSSTOG00000030302 #33	ENSSTOG00000006796	ENSSTOG00000034176 #33	MYCT1 (ENSSTOG00000010644) #34	VIP (ENSSTOG00000007656) #35	FBXO5 (ENSSTOG00000029069) #36	MTRF1L (ENSSTOG00000009980) #37	RGS17 (ENSSTOG00000009988)
Alpin marmot	MODERN SPECIES	2	TAB2 (ENSMMMG00000002489)	ENSMMMG00000002506	ENSMMMG00000002510	PPIL4 (ENSMMMG00000002523) #7	GINM1 (ENSMMMG00000002548) #8	KATNA1 (ENSMMMG00000002573) #9	ENSMMMG00000002742	LATS1 (ENSMMMG00000002763) #10	ENSMMMG00000002801	NUP43 (ENSMMMG00000002812) #11	PCMT1 (ENSMMMG00000002841) #12	ENSMMMG00000002884 #19	ENSMMMG00000002939 #19	ENSMMMG00000002962 #14	IYD (ENSMMMG00000002984) #21	PLEKHG1 (ENSMMMG00000003011) #22	MTHFD1L (ENSMMMG00000003062) #24	AKAP12 (ENSMMMG00000003251) #27	ZBTB2 (ENSMMMG00000003286) #28	RMND1 (ENSMMMG00000003297) #29	ARMT1 (ENSMMMG00000003333) #30	CCDC170 (ENSMMMG00000003378) #31	ESR1 (ENSMMMG00000003430) #32	ENSMMMG00000003497 #33	ENSMMMG00000003544 #33	ENSMMMG00000003589	ENSMMMG00000003653 #33	MYCT1 (ENSMMMG00000003699) #34	VIP (ENSMMMG00000003724) #35	FBXO5 (ENSMMMG00000003740) #36	MTRF1L (ENSMMMG00000003749) #37
Eurasian red squirrel	MODERN SPECIES	16	ZC3H12D (ENSSVLG00005014060)	PPIL4 (ENSSVLG00005013984) #7	ENSSVLG00005013892 #8	KATNA1 (ENSSVLG00005013780) #9	LATS1 (ENSSVLG00005013545) #10	NUP43 (ENSSVLG00005013493) #11	PCMT1 (ENSSVLG00005013272) #12	ENSSVLG00005013084	LRP11 (ENSSVLG00005012935) #13	ENSSVLG00005012789 #14	ENSSVLG00005012647 #19	ENSSVLG00005012613	ENSSVLG00005012559 #19	PPP1R14C (ENSSVLG00005012500) #20	IYD (ENSSVLG00005012284) #21	PLEKHG1 (ENSSVLG00005012201) #22	MTHFD1L (ENSSVLG00005012073) #24	AKAP12 (ENSSVLG00005012004) #27	ZBTB2 (ENSSVLG00005011964) #28	RMND1 (ENSSVLG00005011890) #29	ARMT1 (ENSSVLG00005011814) #30	CCDC170 (ENSSVLG00005011680) #31	ESR1 (ENSSVLG00005011518) #32	ENSSVLG00005011101 #33	ENSSVLG00005010970 #33	ENSSVLG00005010938	ENSSVLG00005021418 #33	MYCT1 (ENSSVLG00005021349) #34	VIP (ENSSVLG00005021260) #35	ENSSVLG00005021174	FBXO5 (ENSSVLG00005021108) #36
Hystricomorpha	ANCESTRAL SPECIES	53	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473.b	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.dc #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00440000039314.a.e.a.b	ENSGT00940000155393.d	ENSGT00940000158236
Hystricomorpha_a	ANCESTRAL SPECIES	30	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473.b	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.dc #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00440000039314.a.e.a.b	ENSGT00940000155393.d	ENSGT00940000158236
Hystricomorpha_b	ANCESTRAL SPECIES	29	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473.b	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.dc #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00440000039314.a.e.a.b	ENSGT00940000155393.d	ENSGT00940000158236
Long-tailed chinchilla	MODERN SPECIES	146	ADGB (ENSCLAG00000004642)	STXBP5 (ENSCLAG00000004159)	SASH1 (ENSCLAG00000003367)	UST (ENSCLAG00000003051)	TAB2 (ENSCLAG00000002977)	ZC3H12D (ENSCLAG00000002831)	PPIL4 (ENSCLAG00000003991) #7	GINM1 (ENSCLAG00000003584) #8	KATNA1 (ENSCLAG00000003505) #9	LATS1 (ENSCLAG00000003449) #10	NUP43 (ENSCLAG00000003394) #11	PCMT1 (ENSCLAG00000003224) #12	ENSCLAG00000003173 #13	ENSCLAG00000002777	IYD (ENSCLAG00000002712) #21	PLEKHG1 (ENSCLAG00000004103) #22	MTHFD1L (ENSCLAG00000003603) #24	AKAP12 (ENSCLAG00000003496) #27	ZBTB2 (ENSCLAG00000003435) #28	ENSCLAG00000003248	ARMT1 (ENSCLAG00000003161) #30	CCDC170 (ENSCLAG00000003105) #31	ESR1 (ENSCLAG00000003026) #32	ENSCLAG00000002772 #33	ENSCLAG00000002568	ENSCLAG00000002479 #33	MYCT1 (ENSCLAG00000004202) #34	VIP (ENSCLAG00000004151) #35	ENSCLAG00000004035	FBXO5 (ENSCLAG00000003927) #36	ENSCLAG00000003820
Degu	MODERN SPECIES	287													PPP1R14C (ENSODEG00000001211) #20	IYD (ENSODEG00000001311) #21	ENSODEG00000018708	PLEKHG1 (ENSODEG00000001446) #22	MTHFD1L (ENSODEG00000001602) #24	ENSODEG00000018687	ZBTB2 (ENSODEG00000001142) #28	RMND1 (ENSODEG00000001174) #29	ENSODEG00000001262 #30	ENSODEG00000001273 #30	ENSODEG00000001305	CCDC170 (ENSODEG00000000921) #31	ENSODEG00000000997	ESR1 (ENSODEG00000001036) #32	SYNE1 (ENSODEG00000001363) #33	MYCT1 (ENSODEG00000001986) #34	VIP (ENSODEG00000002006) #35
Guinea pig	MODERN SPECIES	41	MED23 (ENSCPOG00000004032)	ARG1 (ENSCPOG00000023666)	AKAP7 (ENSCPOG00000035986)	EPB41L2 (ENSCPOG00000012165)	ENSCPOG00000037530	ENSCPOG00000006291	L3MBTL3 (ENSCPOG00000006280)	ARHGAP18 (ENSCPOG00000003798)	LAMA2 (ENSCPOG00000014253)	PTPRK (ENSCPOG00000011053)	THEMIS (ENSCPOG00000008519)	C6orf58 (ENSCPOG00000012978)	ENSCPOG00000035238	KIAA0408 (ENSCPOG00000020737)	ENSCPOG00000035414	PLEKHG1 (ENSCPOG00000010045) #22	MTHFD1L (ENSCPOG00000010056) #24	AKAP12 (ENSCPOG00000005547) #27	ZBTB2 (ENSCPOG00000034799) #28	ENSCPOG00000005849	ARMT1 (ENSCPOG00000040489) #30	CCDC170 (ENSCPOG00000008222) #31	ESR1 (ENSCPOG00000008317) #32	ENSCPOG00000039266 #33	ENSCPOG00000008325	ENSCPOG00000032322 #33	MYCT1 (ENSCPOG00000036928) #34	VIP (ENSCPOG00000002991) #35	FBXO5 (ENSCPOG00000007680) #36	RGS17 (ENSCPOG00000003312)	OPRM1 (ENSCPOG00000008135)
Naked mole-rat female	MODERN SPECIES		ENSHGLG00000009741	ZC3H12D (ENSHGLG00000008570)	PPIL4 (ENSHGLG00000007609) #7	GINM1 (ENSHGLG00000006870) #8	KATNA1 (ENSHGLG00000003287) #9	LATS1 (ENSHGLG00000010491) #10	NUP43 (ENSHGLG00000007986) #11	PCMT1 (ENSHGLG00000033749) #12	ENSHGLG00000006945 #13	ENSHGLG00000035878	ENSHGLG00000039077	ENSHGLG00000012691	ENSHGLG00000012404 #20	ENSHGLG00000036728	ENSHGLG00000012265 #21	ENSHGLG00000046296 #22	ENSHGLG00000003082	MTHFD1L (ENSHGLG00000010567) #24	AKAP12 (ENSHGLG00000008686) #27	ZBTB2 (ENSHGLG00000041496) #28	RMND1 (ENSHGLG00000006256) #29	ARMT1 (ENSHGLG00000046933) #30	CCDC170 (ENSHGLG00000002356) #31	ENSHGLG00000046338	ENSHGLG00000016358	ESR1 (ENSHGLG00000001873) #32	ENSHGLG00000005683 #33	ENSHGLG00000041227	ENSHGLG00000047622 #33	ENSHGLG00000004180 #33	MYCT1 (ENSHGLG00000003966) #34
Rodentia_B	ANCESTRAL SPECIES	18	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Kangaroo rat	MODERN SPECIES	417	Sash1 (ENSDORG00000002479)	Ust (ENSDORG00000015868)	Tab2 (ENSDORG00000000707)	ENSDORG00000027483	Ppil4 (ENSDORG00000007186) #7	Ginm1 (ENSDORG00000007187) #8	ENSDORG00000025692 #9	ENSDORG00000029134 #9	Lats1 (ENSDORG00000007190) #10	ENSDORG00000002203 #11	Pcmt1 (ENSDORG00000003137) #12	Lrp11 (ENSDORG00000003139) #13	ENSDORG00000023774	Ppp1r14c (ENSDORG00000029153) #20	Iyd (ENSDORG00000016201) #21	ENSDORG00000029716 #22	Mthfd1l (ENSDORG00000006234) #24	Zbtb2 (ENSDORG00000013305) #28	ENSDORG00000025869 #29	ENSDORG00000000434 #30	Ccdc170 (ENSDORG00000014673) #31	Esr1 (ENSDORG00000010443) #32	Syne1 (ENSDORG00000013226) #33	Myct1 (ENSDORG00000027276) #34	Vip (ENSDORG00000015940) #35	Fbxo5 (ENSDORG00000000495) #36	Mtrf1l (ENSDORG00000010997) #37	Rgs17 (ENSDORG00000011002)	Oprm1 (ENSDORG00000002315)	Ipcef1 (ENSDORG00000023655)	Cnksr3 (ENSDORG00000008824)
Myomorpha	ANCESTRAL SPECIES	21	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Muroidea	ANCESTRAL SPECIES	22	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT00510000048701	ENSGT00900000143212	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Murinae	ANCESTRAL SPECIES	29														ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Mus	ANCESTRAL SPECIES	15														ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Mus_A	ANCESTRAL SPECIES	11														ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401.a #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Mus_B	ANCESTRAL SPECIES	10												ENSGT00940000169591.d	ENSGT01100000263517.b.d.m.a.a.a.a.c.x #14	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401.a #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Mouse	MODERN SPECIES	1													H60c (ENSMUSG00000091618)	Ppp1r14c (ENSMUSG00000040653) #20	Iyd (ENSMUSG00000019762) #21	Plekhg1 (ENSMUSG00000040624) #22	Mthfd1l (ENSMUSG00000040675) #24	Akap12 (ENSMUSG00000038587) #27	Zbtb2 (ENSMUSG00000075327) #28	Rmnd1 (ENSMUSG00000019763) #29	Armt1 (ENSMUSG00000061759) #30	Ccdc170 (ENSMUSG00000019767) #31	Esr1 (ENSMUSG00000019768) #32	Syne1 (ENSMUSG00000096054) #33	Myct1 (ENSMUSG00000046916) #34	Vip (ENSMUSG00000019772) #35	Fbxo5 (ENSMUSG00000019773) #36	Mtrf1l (ENSMUSG00000019774) #37	Rgs17 (ENSMUSG00000019775)	Oprm1 (ENSMUSG00000000766)	Ipcef1 (ENSMUSG00000064065)
Mus_C	ANCESTRAL SPECIES	7												ENSGT00940000169591.d	ENSGT01100000263517.b.d.m.a.a.a.a.c.x #14	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401.a #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Steppe mouse	MODERN SPECIES	3173											ENSMSIG00000028950	ENSMSIG00000028953	H60c (ENSMSIG00000028958)	ENSMSIG00000028966 #20	ENSMSIG00000028971 #21	Plekhg1 (ENSMSIG00000028989) #22	Mthfd1l (ENSMSIG00000029009) #24	ENSMSIG00000029049	Akap12 (ENSMSIG00000029068) #27	ENSMSIG00000029085	Zbtb2 (ENSMSIG00000029096) #28	Rmnd1 (ENSMSIG00000029100) #29	Armt1 (ENSMSIG00000029112) #30	Ccdc170 (ENSMSIG00000029125) #31	Esr1 (ENSMSIG00000029132) #32	Syne1 (ENSMSIG00000029148) #33	Myct1 (ENSMSIG00000029269) #34	Vip (ENSMSIG00000029272) #35
spretus	MODERN SPECIES	1										MGP_SPRETEiJ_G0015877	MGP_SPRETEiJ_G0015878	MGP_SPRETEiJ_G0015880 #14	MGP_SPRETEiJ_G0015881 #14	Ppp1r14c (MGP_SPRETEiJ_G0015882) #20	Iyd (MGP_SPRETEiJ_G0015883) #21	Plekhg1 (MGP_SPRETEiJ_G0015884) #22	Mthfd1l (MGP_SPRETEiJ_G0015885) #24	Akap12 (MGP_SPRETEiJ_G0015886) #27	Zbtb2 (MGP_SPRETEiJ_G0015887) #28	Rmnd1 (MGP_SPRETEiJ_G0015888) #29	Armt1 (MGP_SPRETEiJ_G0015889) #30	Ccdc170 (MGP_SPRETEiJ_G0015890) #31	Esr1 (MGP_SPRETEiJ_G0015891) #32	MGP_SPRETEiJ_G0015893	Myct1 (MGP_SPRETEiJ_G0015895) #34	Vip (MGP_SPRETEiJ_G0015896) #35	Fbxo5 (MGP_SPRETEiJ_G0015897) #36	Mtrf1l (MGP_SPRETEiJ_G0015898) #37	Rgs17 (MGP_SPRETEiJ_G0015899)	Oprm1 (MGP_SPRETEiJ_G0015900)	Ipcef1 (MGP_SPRETEiJ_G0015901)
Ryukyu mouse	MODERN SPECIES	1														Ppp1r14c (MGP_CAROLIEiJ_G0015077) #20	Iyd (MGP_CAROLIEiJ_G0015078) #21	Plekhg1 (MGP_CAROLIEiJ_G0015079) #22	Mthfd1l (MGP_CAROLIEiJ_G0015080) #24	Akap12 (MGP_CAROLIEiJ_G0015081) #27	Zbtb2 (MGP_CAROLIEiJ_G0015082) #28	Rmnd1 (MGP_CAROLIEiJ_G0015083) #29	Armt1 (MGP_CAROLIEiJ_G0015084) #30	Ccdc170 (MGP_CAROLIEiJ_G0015085) #31	Esr1 (MGP_CAROLIEiJ_G0015086) #32	MGP_CAROLIEiJ_G0015087 #33	MGP_CAROLIEiJ_G0015088	Myct1 (MGP_CAROLIEiJ_G0015089) #34	Vip (MGP_CAROLIEiJ_G0015090) #35	Fbxo5 (MGP_CAROLIEiJ_G0015091) #36	Mtrf1l (MGP_CAROLIEiJ_G0015092) #37	Rgs17 (MGP_CAROLIEiJ_G0015093)	Oprm1 (MGP_CAROLIEiJ_G0015094)
Shrew mouse	MODERN SPECIES	13	Ubash3a (MGP_PahariEiJ_G0023683)	Rsph1 (MGP_PahariEiJ_G0023684)	Slc37a1 (MGP_PahariEiJ_G0023685)	Pde9a (MGP_PahariEiJ_G0023686)	MGP_PahariEiJ_G0023687	Ndufv3 (MGP_PahariEiJ_G0023688)	Pknox1 (MGP_PahariEiJ_G0023689)	Cbs (MGP_PahariEiJ_G0023690)	U2af1 (MGP_PahariEiJ_G0023691)	Cryaa (MGP_PahariEiJ_G0023692)	Sik1 (MGP_PahariEiJ_G0023693)	MGP_PahariEiJ_G0023694	Rrp1b (MGP_PahariEiJ_G0023695)	Ppp1r14c (MGP_PahariEiJ_G0023696) #20	Iyd (MGP_PahariEiJ_G0023697) #21	Plekhg1 (MGP_PahariEiJ_G0023698) #22	Mthfd1l (MGP_PahariEiJ_G0023699) #24	Akap12 (MGP_PahariEiJ_G0023700) #27	Zbtb2 (MGP_PahariEiJ_G0023701) #28	MGP_PahariEiJ_G0023702	Armt1 (MGP_PahariEiJ_G0023703) #30	MGP_PahariEiJ_G0023704 #31	Esr1 (MGP_PahariEiJ_G0023705) #32	MGP_PahariEiJ_G0023706 #33	MGP_PahariEiJ_G0023707	Myct1 (MGP_PahariEiJ_G0023708) #34	Vip (MGP_PahariEiJ_G0023709) #35	Fbxo5 (MGP_PahariEiJ_G0023710) #36	Mtrf1l (MGP_PahariEiJ_G0023711) #37	Rgs17 (MGP_PahariEiJ_G0023712)	Oprm1 (MGP_PahariEiJ_G0023713)
Rat	MODERN SPECIES		LOC102551340 (ENSRNOG00000047145)	Zfp273l-ps1 (ENSRNOG00000046353)	ENSRNOG00000068667	ENSRNOG00000066169	ENSRNOG00000067171	ENSRNOG00000070839	ENSRNOG00000068976	ENSRNOG00000063413	ENSRNOG00000067926	ENSRNOG00000069813	ENSRNOG00000067477	ENSRNOG00000070838	AABR07001348.1 (ENSRNOG00000023081) #14	Ppp1r14c (ENSRNOG00000016368) #20	Iyd (ENSRNOG00000016286) #21	Plekhg1 (ENSRNOG00000016011) #22	Mthfd1l (ENSRNOG00000019582) #24	Akap12 (ENSRNOG00000019549) #27	Zbtb2 (ENSRNOG00000019544) #28	Rmnd1 (ENSRNOG00000019501) #29	Armt1 (ENSRNOG00000019489) #30	Ccdc170 (ENSRNOG00000024280) #31	Esr1 (ENSRNOG00000019358) #32	Syne1 (ENSRNOG00000018960) #33	Myct1 (ENSRNOG00000018858) #34	Vip (ENSRNOG00000018808) #35	Fbxo5 (ENSRNOG00000024077) #36	Mtrf1l (ENSRNOG00000018773) #37	Rgs17 (ENSRNOG00000018690)	AABR07001408.1 (ENSRNOG00000033265)	ENSRNOG00000070385
Cricetidae	ANCESTRAL SPECIES	11	ENSGT00510000048701	ENSGT00900000143212	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Cricetinae	ANCESTRAL SPECIES	7	ENSGT00510000048701	ENSGT00900000143212	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00940000165162	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236
Chinese hamster chok1gshd	MODERN SPECIES	1	Sash1 (ENSCGRG00001005888)	ENSCGRG00001006451	Ust (ENSCGRG00001021198)	ENSCGRG00001021850	Tab2 (ENSCGRG00001022302)	Zc3h12d (ENSCGRG00001019159)	Ppil4 (ENSCGRG00001019623) #7	Ginm1 (ENSCGRG00001022724) #8	Katna1 (ENSCGRG00001023013) #9	Lats1 (ENSCGRG00001023972) #10	ENSCGRG00001019911 #11	Pcmt1 (ENSCGRG00001009158) #12	Lrp11 (ENSCGRG00001010309) #13	Ppp1r14c (ENSCGRG00001022707) #20	Iyd (ENSCGRG00001022969) #21	Plekhg1 (ENSCGRG00001023431) #22	Mthfd1l (ENSCGRG00001022372) #24	Akap12 (ENSCGRG00001022879) #27	Zbtb2 (ENSCGRG00001023273) #28	Rmnd1 (ENSCGRG00001018312) #29	Armt1 (ENSCGRG00001019042) #30	Ccdc170 (ENSCGRG00001019582) #31	Esr1 (ENSCGRG00001024268) #32	ENSCGRG00001024508 #33	ENSCGRG00001016292	ENSCGRG00001017406 #33	Myct1 (ENSCGRG00001007389) #34	Vip (ENSCGRG00001023726) #35	Fbxo5 (ENSCGRG00001024225) #36	Mtrf1l (ENSCGRG00001024662) #37	Rgs17 (ENSCGRG00001008622)
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	621	ENSMAUG00000001554	ENSMAUG00000020795	ENSMAUG00000008799	Tab2 (ENSMAUG00000011287)	Zc3h12d (ENSMAUG00000015783)	Ppil4 (ENSMAUG00000015059) #7	Ginm1 (ENSMAUG00000008067) #8	ENSMAUG00000016471 #9	ENSMAUG00000012301 #9	Lats1 (ENSMAUG00000020092) #10	Nup43 (ENSMAUG00000018659) #11	Pcmt1 (ENSMAUG00000011320) #12	Lrp11 (ENSMAUG00000014809) #13	Ppp1r14c (ENSMAUG00000019718) #20	Iyd (ENSMAUG00000013810) #21	ENSMAUG00000011570 #22	Mthfd1l (ENSMAUG00000016191) #24	ENSMAUG00000020409 #27	Zbtb2 (ENSMAUG00000008627) #28	Rmnd1 (ENSMAUG00000011585) #29	Armt1 (ENSMAUG00000012945) #30	Ccdc170 (ENSMAUG00000008640) #31	Esr1 (ENSMAUG00000006785) #32	ENSMAUG00000014937 #33	ENSMAUG00000012320	ENSMAUG00000019847 #33	Myct1 (ENSMAUG00000014906) #34	Vip (ENSMAUG00000014470) #35	Fbxo5 (ENSMAUG00000000824) #36	Mtrf1l (ENSMAUG00000017702) #37	ENSMAUG00000021559
Golden Hamster	MODERN SPECIES	50																ENSMAUG00000015378 #22
Cricetidae_B	ANCESTRAL SPECIES	21	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Prairie vole	MODERN SPECIES	358	Tspyl4 (ENSMOCG00000006852)	Tspyl1 (ENSMOCG00000007884)	Dse (ENSMOCG00000021598)	Calhm6 (ENSMOCG00000017769)	Calhm5 (ENSMOCG00000011633)	Trappc3l (ENSMOCG00000011302)	Calhm4 (ENSMOCG00000004418)	ENSMOCG00000002869	ENSMOCG00000021945	Grik2 (ENSMOCG00000022205)	Ascc3 (ENSMOCG00000004549)	Sim1 (ENSMOCG00000017754)	ENSMOCG00000008070	Ppp1r14c (ENSMOCG00000002551) #20	Iyd (ENSMOCG00000012475) #21	Plekhg1 (ENSMOCG00000006027) #22	Mthfd1l (ENSMOCG00000011918) #24	ENSMOCG00000019373 #27	Zbtb2 (ENSMOCG00000018175) #28	Rmnd1 (ENSMOCG00000012373) #29	Armt1 (ENSMOCG00000008335) #30	Ccdc170 (ENSMOCG00000015340) #31	ENSMOCG00000008666	Esr1 (ENSMOCG00000004623) #32	Syne1 (ENSMOCG00000003007) #33	Myct1 (ENSMOCG00000003327) #34	Vip (ENSMOCG00000000402) #35	Fbxo5 (ENSMOCG00000016622) #36	Mtrf1l (ENSMOCG00000016147) #37	Rgs17 (ENSMOCG00000013891)	Oprm1 (ENSMOCG00000009671)
Northern American deer mouse	MODERN SPECIES	7	Ginm1 (ENSPEMG00000018350) #8	Katna1 (ENSPEMG00000020852) #9	Lats1 (ENSPEMG00000021147) #10	Nup43 (ENSPEMG00000022692) #11	Pcmt1 (ENSPEMG00000027593) #12	Lrp11 (ENSPEMG00000000669) #13	ENSPEMG00000026371 #19	ENSPEMG00000026324	ENSPEMG00000027039 #14	ENSPEMG00000025014	ENSPEMG00000028469 #19	ENSPEMG00000029355 #14	ENSPEMG00000031117	Ppp1r14c (ENSPEMG00000026419) #20	Iyd (ENSPEMG00000009998) #21	Plekhg1 (ENSPEMG00000003381) #22	Mthfd1l (ENSPEMG00000012428) #24	ENSPEMG00000028722 #27	Zbtb2 (ENSPEMG00000028248) #28	Rmnd1 (ENSPEMG00000014544) #29	Armt1 (ENSPEMG00000027664) #30	Ccdc170 (ENSPEMG00000018858) #31	ENSPEMG00000028412	Esr1 (ENSPEMG00000012747) #32	ENSPEMG00000000704 #33	ENSPEMG00000029017 #33	ENSPEMG00000013933	ENSPEMG00000007014 #33	Myct1 (ENSPEMG00000016041) #34	Vip (ENSPEMG00000007974) #35	ENSPEMG00000005147
Upper Galilee mountains blind mole rat	MODERN SPECIES	1401														Iyd (ENSNGAG00000000377) #21	ENSNGAG00000010901	Plekhg1 (ENSNGAG00000002088) #22	Mthfd1l (ENSNGAG00000014110) #24	Akap12 (ENSNGAG00000001974) #27	Zbtb2 (ENSNGAG00000001004) #28	Rmnd1 (ENSNGAG00000003570) #29	Armt1 (ENSNGAG00000020620) #30	Ccdc170 (ENSNGAG00000013308) #31	ENSNGAG00000001180	Esr1 (ENSNGAG00000017049) #32	ENSNGAG00000000637 #33
Lesser Egyptian jerboa	MODERN SPECIES	44	ENSJJAG00000023184	Samd5 (ENSJJAG00000022729)	Sash1 (ENSJJAG00000009813)	Ust (ENSJJAG00000020630)	Tab2 (ENSJJAG00000008679)	Ppil4 (ENSJJAG00000017619) #7	Ginm1 (ENSJJAG00000010543) #8	ENSJJAG00000021207 #9	Lats1 (ENSJJAG00000019456) #10	Nup43 (ENSJJAG00000012578) #11	Pcmt1 (ENSJJAG00000023560) #12	Lrp11 (ENSJJAG00000024401) #13	ENSJJAG00000018910	Ppp1r14c (ENSJJAG00000020290) #20	ENSJJAG00000024322 #21	Plekhg1 (ENSJJAG00000023794) #22	Mthfd1l (ENSJJAG00000014266) #24	Akap12 (ENSJJAG00000021521) #27	Zbtb2 (ENSJJAG00000016308) #28	Rmnd1 (ENSJJAG00000008798) #29	ENSJJAG00000015720 ##30	ENSJJAG00000011473 #31	Esr1 (ENSJJAG00000015406) #32	ENSJJAG00000010411 #32	Syne1 (ENSJJAG00000014032) #33	Myct1 (ENSJJAG00000022731) #34	Vip (ENSJJAG00000018682) #35	ENSJJAG00000005271	Fbxo5 (ENSJJAG00000006490) #36	Mtrf1l (ENSJJAG00000024141) #37	Rgs17 (ENSJJAG00000009873)
Laurasiatheria	ANCESTRAL SPECIES	7	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00940000174968	ENSGT00940000165162	ENSGT00940000154481.a.b.ac.a #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37
Artiodactyla	ANCESTRAL SPECIES	19	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00940000174968	ENSGT00940000165162	ENSGT00940000154481.a.b.ac.a #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37
Suina	ANCESTRAL SPECIES	18	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803.e #11	ENSGT00900000143690	ENSGT00390000004803.f #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Pig	MODERN SPECIES		KATNA1 (ENSSSCG00000004104) #9	LATS1 (ENSSSCG00000004106) #10	ENSSSCG00000031644	NUP43 (ENSSSCG00000004105) #11	PCMT1 (ENSSSCG00000004103) #12	LRP11 (ENSSSCG00000004101) #13	ULBP1 (ENSSSCG00000026042) #19	ENSSSCG00000041378 #14	ENSSSCG00000004096 #14	ENSSSCG00000033578 #14	ENSSSCG00000032525 #14	ENSSSCG00000035574 #19	PPP1R14C (ENSSSCG00000004094) #20	IYD (ENSSSCG00000004093) #21	ENSSSCG00000040966	PLEKHG1 (ENSSSCG00000032778) #22	MTHFD1L (ENSSSCG00000004092) #24	AKAP12 (ENSSSCG00000031733) #27	ZBTB2 (ENSSSCG00000004090) #28	RMND1 (ENSSSCG00000004089) #29	ARMT1 (ENSSSCG00000004088) #30	CCDC170 (ENSSSCG00000004087) #31	ENSSSCG00000046251	ESR1 (ENSSSCG00000025777) #32	ENSSSCG00000004082 #33	ENSSSCG00000049158	ENSSSCG00000004081 #33	MYCT1 (ENSSSCG00000031536) #34	VIP (ENSSSCG00000004078) #35	FBXO5 (ENSSSCG00000004077) #36	MTRF1L (ENSSSCG00000004076) #37
Chacoan peccary	MODERN SPECIES	58	TAB2 (ENSCWAG00000000449)	ENSCWAG00000000428	PPIL4 (ENSCWAG00000000404) #7	GINM1 (ENSCWAG00000000374) #8	KATNA1 (ENSCWAG00000000351) #9	LATS1 (ENSCWAG00000000323) #10	ENSCWAG00000000304 #11	NUP43 (ENSCWAG00000000291) #11	PCMT1 (ENSCWAG00000000240) #12	LRP11 (ENSCWAG00000000182) #13	ENSCWAG00000000157 #14	ENSCWAG00000000130 #19	ENSCWAG00000000084 #19	PPP1R14C (ENSCWAG00000000064) #20	IYD (ENSCWAG00000000052) #21	PLEKHG1 (ENSCWAG00000000019) #22	MTHFD1L (ENSCWAG00000000009) #24	AKAP12 (ENSCWAG00000008834) #27	ZBTB2 (ENSCWAG00000008811) #28	RMND1 (ENSCWAG00000008762) #29	ARMT1 (ENSCWAG00000008701) #30	CCDC170 (ENSCWAG00000008566) #31	ESR1 (ENSCWAG00000008426) #32	SYNE1 (ENSCWAG00000005922) #33	MYCT1 (ENSCWAG00000005709) #34	VIP (ENSCWAG00000005683) #35	FBXO5 (ENSCWAG00000005639) #36	MTRF1L (ENSCWAG00000005591) #37	RGS17 (ENSCWAG00000005553)	IPCEF1 (ENSCWAG00000005502)	OPRM1 (ENSCWAG00000005403)
Artiodactyla_a	ANCESTRAL SPECIES	21	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00940000174968	ENSGT00940000165162	ENSGT00940000154481.a.b.ac.a #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37
Artiodactyla_b	ANCESTRAL SPECIES	18	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.b #19	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00940000174968	ENSGT00940000165162	ENSGT00940000154481.a.b.ac.a #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37
Cetacea	ANCESTRAL SPECIES	18	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000185143	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.a #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00940000165162	ENSGT00940000154481.a.b.ac.a #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d
Odontoceti	ANCESTRAL SPECIES	18	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000185143	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.a #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Odontoceti_a	ANCESTRAL SPECIES	16	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000185143	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.a #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Odontoceti_b	ANCESTRAL SPECIES	18	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.a #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT01010000228886	ENSGT00940000154481.a.b.bc #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236
Monodontidae	ANCESTRAL SPECIES	18	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000185143	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT01010000228886	ENSGT00940000154481.a.b.bc #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236
Narwhal	MODERN SPECIES	301	SASH1 (ENSMMNG00015005373)	UST (ENSMMNG00015009353)	TAB2 (ENSMMNG00015009360)	ZC3H12D (ENSMMNG00015009369)	PPIL4 (ENSMMNG00015009380) #7	GINM1 (ENSMMNG00015009391) #8	KATNA1 (ENSMMNG00015009407) #9	LATS1 (ENSMMNG00015009427) #10	ENSMMNG00015009437	NUP43 (ENSMMNG00015009446) #11	PCMT1 (ENSMMNG00015009476) #12	LRP11 (ENSMMNG00015009513) #13	ENSMMNG00015009542	PPP1R14C (ENSMMNG00015009544) #20	IYD (ENSMMNG00015009560) #21	PLEKHG1 (ENSMMNG00015009571) #22	MTHFD1L (ENSMMNG00015009588) #24	AKAP12 (ENSMMNG00015009623) #27	ZBTB2 (ENSMMNG00015009627) #28	RMND1 (ENSMMNG00015009633) #29	ARMT1 (ENSMMNG00015009647) #30	ESR1 (ENSMMNG00015009658) #32	ENSMMNG00015009668	SYNE1 (ENSMMNG00015009727) #33	MYCT1 (ENSMMNG00015009810) #34	VIP (ENSMMNG00015009820) #35	FBXO5 (ENSMMNG00015009826) #36	MTRF1L (ENSMMNG00015009848) #37	RGS17 (ENSMMNG00015009868)	OPRM1 (ENSMMNG00015009889)	IPCEF1 (ENSMMNG00015009907)
Beluga whale	MODERN SPECIES	80	SASH1 (ENSDLEG00000008357)	UST (ENSDLEG00000008720)	TAB2 (ENSDLEG00000008743)	ZC3H12D (ENSDLEG00000008768)	PPIL4 (ENSDLEG00000008785) #7	GINM1 (ENSDLEG00000008824) #8	KATNA1 (ENSDLEG00000008867) #9	LATS1 (ENSDLEG00000008906) #10	ENSDLEG00000008938	NUP43 (ENSDLEG00000008958) #11	PCMT1 (ENSDLEG00000008988) #12	LRP11 (ENSDLEG00000009046) #13	ENSDLEG00000009098	ENSDLEG00000009118 #20	IYD (ENSDLEG00000009156) #21	PLEKHG1 (ENSDLEG00000009309) #22	MTHFD1L (ENSDLEG00000009381) #24	AKAP12 (ENSDLEG00000009611) #27	ZBTB2 (ENSDLEG00000009640) #28	RMND1 (ENSDLEG00000009657) #29	ARMT1 (ENSDLEG00000009691) #30	CCDC170 (ENSDLEG00000009713) #31	ESR1 (ENSDLEG00000009792) #32	ENSDLEG00000009813	SYNE1 (ENSDLEG00000010092) #33	MYCT1 (ENSDLEG00000012183) #34	VIP (ENSDLEG00000012194) #35	FBXO5 (ENSDLEG00000012221) #36	MTRF1L (ENSDLEG00000012260) #37	RGS17 (ENSDLEG00000012267)	ENSDLEG00000012302
Vaquita	MODERN SPECIES	3	SASH1 (ENSPSNG00000010877)	UST (ENSPSNG00000010825)	TAB2 (ENSPSNG00000010769)	ENSPSNG00000010699	PPIL4 (ENSPSNG00000010612) #7	GINM1 (ENSPSNG00000010551) #8	KATNA1 (ENSPSNG00000010475) #9	LATS1 (ENSPSNG00000010422) #10	ENSPSNG00000010371	NUP43 (ENSPSNG00000010302) #11	PCMT1 (ENSPSNG00000010042) #12	LRP11 (ENSPSNG00000009810) #13	ENSPSNG00000009584 #19	PPP1R14C (ENSPSNG00000022573) #20	IYD (ENSPSNG00000022571) #21	PLEKHG1 (ENSPSNG00000022563) #22	MTHFD1L (ENSPSNG00000022543) #24	AKAP12 (ENSPSNG00000022535) #27	ZBTB2 (ENSPSNG00000022533) #28	RMND1 (ENSPSNG00000022531) #29	ARMT1 (ENSPSNG00000022528) #30	ENSPSNG00000022515	ESR1 (ENSPSNG00000022511) #32	ENSPSNG00000022502	SYNE1 (ENSPSNG00000022337) #33	MYCT1 (ENSPSNG00000022131) #34	VIP (ENSPSNG00000022117) #35	FBXO5 (ENSPSNG00000022107) #36	MTRF1L (ENSPSNG00000022083) #37	RGS17 (ENSPSNG00000022062)	OPRM1 (ENSPSNG00000022034)
Dolphin	MODERN SPECIES	48																PLEKHG1 (ENSTTRG00000006149) #22	MTHFD1L (ENSTTRG00000006156) #24
Sperm whale	MODERN SPECIES	1	SASH1 (ENSPCTG00005000760)	UST (ENSPCTG00005000730)	TAB2 (ENSPCTG00005000695)	ENSPCTG00005000658	PPIL4 (ENSPCTG00005000625) #7	GINM1 (ENSPCTG00005000594) #8	ENSPCTG00005000533 #9	LATS1 (ENSPCTG00005007155) #10	ENSPCTG00005007144	NUP43 (ENSPCTG00005007117) #11	PCMT1 (ENSPCTG00005007055) #12	ENSPCTG00005007010 #13	ENSPCTG00005006995	PPP1R14C (ENSPCTG00005006973) #20	IYD (ENSPCTG00005006834) #21	PLEKHG1 (ENSPCTG00005006762) #22	MTHFD1L (ENSPCTG00005006289) #24	AKAP12 (ENSPCTG00005006212) #27	ZBTB2 (ENSPCTG00005006183) #28	RMND1 (ENSPCTG00005006136) #29	ARMT1 (ENSPCTG00005006118) #30	CCDC170 (ENSPCTG00005006069) #31	ENSPCTG00005006030	ESR1 (ENSPCTG00005005962) #32	SYNE1 (ENSPCTG00005005794) #33	ENSPCTG00005005713 #33	ENSPCTG00005005623 #33	MYCT1 (ENSPCTG00005005562) #34	VIP (ENSPCTG00005005536) #35	FBXO5 (ENSPCTG00005005511) #36	MTRF1L (ENSPCTG00005005476) #37
Blue whale	MODERN SPECIES	3	TAB2 (ENSBMSG00010010292)	ZC3H12D (ENSBMSG00010010274)	PPIL4 (ENSBMSG00010010254) #7	GINM1 (ENSBMSG00010010234) #8	KATNA1 (ENSBMSG00010010214) #9	LATS1 (ENSBMSG00010010190) #10	ENSBMSG00010010172	NUP43 (ENSBMSG00010010153) #11	PCMT1 (ENSBMSG00010010090) #12	LRP11 (ENSBMSG00010010034) #13	ENSBMSG00010010009	ENSBMSG00010009982 #19	ENSBMSG00010009953	ENSBMSG00010009935 #20	IYD (ENSBMSG00010009876) #21	PLEKHG1 (ENSBMSG00010009838) #22	MTHFD1L (ENSBMSG00010009772) #24	AKAP12 (ENSBMSG00010009739) #27	ZBTB2 (ENSBMSG00010009731) #28	RMND1 (ENSBMSG00010009721) #29	ARMT1 (ENSBMSG00010009705) #30	CCDC170 (ENSBMSG00010009670) #31	ESR1 (ENSBMSG00010009630) #32	ENSBMSG00010009590 #33	ENSBMSG00010009558 #33	ENSBMSG00010009535	ENSBMSG00010009099 #33	MYCT1 (ENSBMSG00010008945) #34	VIP (ENSBMSG00010008935) #35	FBXO5 (ENSBMSG00010008916) #36	MTRF1L (ENSBMSG00010008898) #37
Pecora	ANCESTRAL SPECIES	19	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.a.b #19	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.b #19	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.b #19	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.a #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00940000174968	ENSGT00940000165162	ENSGT00940000154481.a.b.ac.a #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37
Yarkand deer	MODERN SPECIES	18	GINM1 (ENSCHYG00000023245) #8	ENSCHYG00000023317 #9	LATS1 (ENSCHYG00000023456) #10	ENSCHYG00000023530	NUP43 (ENSCHYG00000023555) #11	PCMT1 (ENSCHYG00000023657) #12	ENSCHYG00000023963	ENSCHYG00000023991 #13	ENSCHYG00000024023 #14	ENSCHYG00000024059 #19	ENSCHYG00000024218 #19	ENSCHYG00000024396 #19	ENSCHYG00000024426	PPP1R14C (ENSCHYG00000024443) #20	IYD (ENSCHYG00000024472) #21	PLEKHG1 (ENSCHYG00000024587) #22	ENSCHYG00000024716	MTHFD1L (ENSCHYG00000024773) #24	AKAP12 (ENSCHYG00000025364) #27	ZBTB2 (ENSCHYG00000025392) #28	RMND1 (ENSCHYG00000025421) #29	ARMT1 (ENSCHYG00000025462) #30	CCDC170 (ENSCHYG00000025505) #31	ESR1 (ENSCHYG00000025561) #32	SYNE1 (ENSCHYG00000025778) #33	MYCT1 (ENSCHYG00000026747) #34	VIP (ENSCHYG00000026757) #35	FBXO5 (ENSCHYG00000026768) #36	ENSCHYG00000026781 #37	RGS17 (ENSCHYG00000026801)	ENSCHYG00000026812
Percora_a	ANCESTRAL SPECIES	21	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c.g #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.a.b #19	ENSGT01100000263517.b.d.m.a.a.a.a.c.h #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.b #19	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.b #19	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.a #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00940000174968	ENSGT00940000165162	ENSGT00940000154481.a.b.ac.a #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37
Siberian musk deer	MODERN SPECIES	60	PPIL4 (ENSMMSG00000003589) #7	GINM1 (ENSMMSG00000003620) #8	KATNA1 (ENSMMSG00000003646) #9	LATS1 (ENSMMSG00000003677) #10	NUP43 (ENSMMSG00000003704) #11	PCMT1 (ENSMMSG00000003758) #12	LRP11 (ENSMMSG00000003820) #13	ENSMMSG00000003839 #14	ENSMMSG00000003858 #19	ENSMMSG00000003875 #19	ENSMMSG00000003889 #19	ENSMMSG00000003897 #14	ENSMMSG00000003903 #19	PPP1R14C (ENSMMSG00000003908) #20	IYD (ENSMMSG00000003954) #21	PLEKHG1 (ENSMMSG00000004000) #22	ENSMMSG00000004073	MTHFD1L (ENSMMSG00000004101) #24	AKAP12 (ENSMMSG00000004153) #27	ZBTB2 (ENSMMSG00000004198) #28	RMND1 (ENSMMSG00000004210) #29	ARMT1 (ENSMMSG00000004226) #30	CCDC170 (ENSMMSG00000004253) #31	ENSMMSG00000004280	ESR1 (ENSMMSG00000004298) #32	SYNE1 (ENSMMSG00000004396) #33	MYCT1 (ENSMMSG00000004698) #34	VIP (ENSMMSG00000004730) #35	FBXO5 (ENSMMSG00000004752) #36	MTRF1L (ENSMMSG00000004788) #37	RGS17 (ENSMMSG00000004836)
Bovidae	ANCESTRAL SPECIES	21	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.a.b #19	ENSGT01100000263517.b.d.m.a.a.a.a.c.g #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.b #19	ENSGT01100000263517.b.d.m.a.a.a.a.c.h #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.b #19	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.a #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00940000174968	ENSGT00940000165162	ENSGT00940000154481.a.b.ac.a #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37
Caprinae	ANCESTRAL SPECIES		ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.b.c.b.a #19	ENSGT00950000185143.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.b.d #19	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.a #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Goat	MODERN SPECIES	28	ENSCHIG00000012517 #19	ENSCHIG00000006873 #19	ENSCHIG00000018340 #19	ENSCHIG00000014062 #19	ENSCHIG00000001983 #14	ENSCHIG00000006005 #19	ENSCHIG00000018826 #19	ENSCHIG00000009129 #14	ENSCHIG00000008160 #19	ENSCHIG00000019400 #13	ENSCHIG00000009062 #13	ENSCHIG00000025529 #19	ENSCHIG00000023203 #19	PPP1R14C (ENSCHIG00000026590) #20	IYD (ENSCHIG00000026899) #21	PLEKHG1 (ENSCHIG00000011933) #22	MTHFD1L (ENSCHIG00000026337) #24	AKAP12 (ENSCHIG00000013493) #27	ZBTB2 (ENSCHIG00000023404) #28	RMND1 (ENSCHIG00000013571) #29	ARMT1 (ENSCHIG00000024403) #30	CCDC170 (ENSCHIG00000015746) #31	ESR1 (ENSCHIG00000014058) #32	ENSCHIG00000022719	ENSCHIG00000017428	SYNE1 (ENSCHIG00000016453) #33	MYCT1 (ENSCHIG00000027092) #34	VIP (ENSCHIG00000015334) #35	ENSCHIG00000018470	FBXO5 (ENSCHIG00000026682) #36	MTRF1L (ENSCHIG00000007830) #37
Rambouillet Sheep	MODERN SPECIES	24	PPIL4 (ENSOARG00020019852) #7	GINM1 (ENSOARG00020019919) #8	KATNA1 (ENSOARG00020019961) #9	LATS1 (ENSOARG00020020046) #10	NUP43 (ENSOARG00020020162) #11	PCMT1 (ENSOARG00020020247) #12	LRP11 (ENSOARG00020020445) #13	ENSOARG00020020509 #19	ENSOARG00020020751	ENSOARG00020020776 #19	ENSOARG00020020849	ENSOARG00020020885 #19	ENSOARG00020020931 #19	PPP1R14C (ENSOARG00020020977) #20	IYD (ENSOARG00020021015) #21	PLEKHG1 (ENSOARG00020021072) #22	MTHFD1L (ENSOARG00020021229) #24	AKAP12 (ENSOARG00020021809) #27	ZBTB2 (ENSOARG00020021872) #28	RMND1 (ENSOARG00020021897) #29	ARMT1 (ENSOARG00020021948) #30	CCDC170 (ENSOARG00020021972) #31	ESR1 (ENSOARG00020022045) #32	SYNE1 (ENSOARG00020022335) #33	MYCT1 (ENSOARG00020024842) #34	VIP (ENSOARG00020024851) #35	FBXO5 (ENSOARG00020024869) #36	MTRF1L (ENSOARG00020024904) #37	RGS17 (ENSOARG00020024922)	ENSOARG00020024931	OPRM1 (ENSOARG00020024943)
Bovinae	ANCESTRAL SPECIES	35	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.a.b.a #19	ENSGT00950000185143.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.b.f #19	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.a.a #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00940000174968	ENSGT00940000165162	ENSGT00940000154481.a.b.ac.a #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37
Bos	ANCESTRAL SPECIES	19	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00940000157437.bb.a.a	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.a.b.a #19	ENSGT00390000004348 #21	ENSGT00950000182985.b.a #20	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.a.a #19	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.b.e #19	ENSGT01100000263517.b.d.m.a.a.a.a.c.h.a #14	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00940000174968	ENSGT00940000165162	ENSGT00940000154481.a.b.ac.a #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37
Bos_a	ANCESTRAL SPECIES	54										ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.a.a #19	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.a.a #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT01100000263517.b.d.m.a.a.a.a.c.h.a #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.b.f.a #19	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Domestic yak	MODERN SPECIES	1											ENSBGRG00000007278	ENSBGRG00000007259	ENSBGRG00000007234 #14	IYD (ENSBGRG00000007032) #21	ENSBGRG00000006995	PLEKHG1 (ENSBGRG00000006883) #22	MTHFD1L (ENSBGRG00000006438) #24	AKAP12 (ENSBGRG00000006364) #27	ZBTB2 (ENSBGRG00000006306) #28	RMND1 (ENSBGRG00000006257) #29	ARMT1 (ENSBGRG00000006221) #30	CCDC170 (ENSBGRG00000006106) #31	ESR1 (ENSBGRG00000006011) #32	ENSBGRG00000005788 #33	ENSBGRG00000005717 #33	ENSBGRG00000005659	ENSBGRG00000005643	ENSBGRG00000004829 #33	MYCT1 (ENSBGRG00000004741) #34	VIP (ENSBGRG00000004685) #35	FBXO5 (ENSBGRG00000004593) #36
Wild yak	MODERN SPECIES	414															ENSBMUG00000022703 #14	PLEKHG1 (ENSBMUG00000022740) #22	MTHFD1L (ENSBMUG00000022849) #24	AKAP12 (ENSBMUG00000022883) #27	ZBTB2 (ENSBMUG00000022889) #28	RMND1 (ENSBMUG00000022921) #29	ARMT1 (ENSBMUG00000022940) #30	CCDC170 (ENSBMUG00000022950) #31	ENSBMUG00000022966 #32	SYNE1 (ENSBMUG00000023407) #33	MYCT1 (ENSBMUG00000023638) #34	VIP (ENSBMUG00000023648) #35	FBXO5 (ENSBMUG00000023656) #36	MTRF1L (ENSBMUG00000023676) #37	RGS17 (ENSBMUG00000023688)	ENSBMUG00000023702	OPRM1 (ENSBMUG00000023738)
Bos_b	ANCESTRAL SPECIES	42											ENSGT00390000004348 #21	ENSGT00950000182985.b.a #20	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.a.a #19	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.b.e.a #19	ENSGT01100000263517.b.d.m.a.a.a.a.c.h.a #14	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00940000165162	ENSGT00940000154481.a.b.ac.a #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d
Hybrid Bos Indicus	MODERN SPECIES	28	ENSBIXG00005021512 #14	ENSBIXG00005005447 #14	ENSBIXG00005021403 #19	ENSBIXG00005003606 #19	ENSBIXG00005003601 #19	ENSBIXG00005021328 #19	ENSBIXG00005021313 #19	ENSBIXG00005021299 #19	ENSBIXG00005003594 #19	ENSBIXG00005021260 #14	ENSBIXG00005021149 #19	ENSBIXG00005021137 #19	PPP1R14C (ENSBIXG00005021119) #20	IYD (ENSBIXG00005021090) #21	ENSBIXG00005003560 #14	PLEKHG1 (ENSBIXG00005021022) #22	MTHFD1L (ENSBIXG00005020926) #24	AKAP12 (ENSBIXG00005020718) #27	ZBTB2 (ENSBIXG00005020697) #28	RMND1 (ENSBIXG00005020664) #29	ARMT1 (ENSBIXG00005020618) #30	CCDC170 (ENSBIXG00005003477) #31	ENSBIXG00005020541	ESR1 (ENSBIXG00005020485) #32	SYNE1 (ENSBIXG00005007834) #33	MYCT1 (ENSBIXG00005019369) #34	VIP (ENSBIXG00005019364) #35	FBXO5 (ENSBIXG00005019333) #36	MTRF1L (ENSBIXG00005005667) #37	OPRM1 (ENSBIXG00005019182)	IPCEF1 (ENSBIXG00005019118)
Cow	MODERN SPECIES	28	LATS1 (ENSBTAG00000015076) #10	ENSBTAG00000050728	NUP43 (ENSBTAG00000010196) #11	PCMT1 (ENSBTAG00000010204) #12	LRP11 (ENSBTAG00000032007) #13	ULBP21 (ENSBTAG00000047902) #19	ENSBTAG00000038891 #19	ENSBTAG00000052230	ULBP17 (ENSBTAG00000024751) #19	ENSBTAG00000036061 #19	ENSBTAG00000050143 #19	RAET1G (ENSBTAG00000039329) #19	PPP1R14C (ENSBTAG00000026586) #20	IYD (ENSBTAG00000015935) #21	ENSBTAG00000048114 #14	PLEKHG1 (ENSBTAG00000009679) #22	MTHFD1L (ENSBTAG00000009846) #24	AKAP12 (ENSBTAG00000014788) #27	ZBTB2 (ENSBTAG00000014790) #28	RMND1 (ENSBTAG00000013224) #29	ARMT1 (ENSBTAG00000004098) #30	ENSBTAG00000006398	CCDC170 (ENSBTAG00000004099) #31	ESR1 (ENSBTAG00000007159) #32	SYNE1 (ENSBTAG00000009362) #33	ENSBTAG00000052949 #33	ENSBTAG00000054309	ENSBTAG00000052173 #33	ENSBTAG00000054597 #33	MYCT1 (ENSBTAG00000043975) #34	VIP (ENSBTAG00000013400) #35
American bison	MODERN SPECIES	3071												ENSBBBG00000012889 #14	ENSBBBG00000012884 #19	ENSBBBG00000012881 #19	IYD (ENSBBBG00000012867) #21	PLEKHG1 (ENSBBBG00000001747) #22	MTHFD1L (ENSBBBG00000002508) #24	AKAP12 (ENSBBBG00000008737) #27	ZBTB2 (ENSBBBG00000012799) #28	RMND1 (ENSBBBG00000012797) #29	ARMT1 (ENSBBBG00000012777) #30	CCDC170 (ENSBBBG00000012772) #31	ENSBBBG00000008109 #32	SYNE1 (ENSBBBG00000012707) #33	MYCT1 (ENSBBBG00000012062) #34	VIP (ENSBBBG00000012054) #35	FBXO5 (ENSBBBG00000012046) #36	MTRF1L (ENSBBBG00000012041) #37	RGS17 (ENSBBBG00000002257)	OPRM1 (ENSBBBG00000012004)	IPCEF1 (ENSBBBG00000011980)
Camelidae	ANCESTRAL SPECIES	37	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Arabian camel	MODERN SPECIES	34	TAB2 (ENSCDRG00005021050)	ENSCDRG00005021043	PPIL4 (ENSCDRG00005021029) #7	ENSCDRG00005021020	GINM1 (ENSCDRG00005021015) #8	KATNA1 (ENSCDRG00005021003) #9	LATS1 (ENSCDRG00005020994) #10	ENSCDRG00005020991	NUP43 (ENSCDRG00005020981) #11	PCMT1 (ENSCDRG00005020971) #12	LRP11 (ENSCDRG00005020953) #13	ENSCDRG00005020939 #14	ENSCDRG00005020920 #19	PPP1R14C (ENSCDRG00005020905) #20	IYD (ENSCDRG00005020897) #21	PLEKHG1 (ENSCDRG00005020866) #22	MTHFD1L (ENSCDRG00005020831) #24	AKAP12 (ENSCDRG00005020815) #27	ZBTB2 (ENSCDRG00005020809) #28	RMND1 (ENSCDRG00005020798) #29	ARMT1 (ENSCDRG00005020788) #30	CCDC170 (ENSCDRG00005020784) #31	ENSCDRG00005020779 #32	ENSCDRG00005020770 #32	SYNE1 (ENSCDRG00005019486) #33	MYCT1 (ENSCDRG00005019378) #34	VIP (ENSCDRG00005019356) #35	FBXO5 (ENSCDRG00005019337) #36	MTRF1L (ENSCDRG00005019302) #37	RGS17 (ENSCDRG00005019286)	OPRM1 (ENSCDRG00005019256)
Alpaca	MODERN SPECIES	3150															IYD (ENSVPAG00000012469) #21	PLEKHG1 (ENSVPAG00000012473) #22	MTHFD1L (ENSVPAG00000012480) #24
Laurasiatheria_b	ANCESTRAL SPECIES	7	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Carnivora	ANCESTRAL SPECIES	4	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Caniformia	ANCESTRAL SPECIES	3	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Caniformia_b	ANCESTRAL SPECIES	6	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Ursidae	ANCESTRAL SPECIES	22	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Ursus	ANCESTRAL SPECIES	117	ENSGT00390000014904	ENSGT00950000182906.b.a	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00940000165162	ENSGT00940000154481.a.b.ac.b #33	ENSGT00940000154481.a.b.ac.a #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35
American black bear	MODERN SPECIES	560																PLEKHG1 (ENSUAMG00000014983) #22	MTHFD1L (ENSUAMG00000014436) #24
Polar bear	MODERN SPECIES	190	STXBP5 (ENSUMAG00000003037)	SASH1 (ENSUMAG00000002837)	UST (ENSUMAG00000002801)	TAB2 (ENSUMAG00000002788)	ENSUMAG00000002782	PPIL4 (ENSUMAG00000002774) #7	GINM1 (ENSUMAG00000002770) #8	KATNA1 (ENSUMAG00000002763) #9	ENSUMAG00000002760 #10	ENSUMAG00000002756 #10	NUP43 (ENSUMAG00000002752) #11	PCMT1 (ENSUMAG00000002747) #12	ENSUMAG00000002745 #13	ENSUMAG00000002741 #19	IYD (ENSUMAG00000002727) #21	PLEKHG1 (ENSUMAG00000002715) #22	MTHFD1L (ENSUMAG00000002326) #24	ENSUMAG00000002250 #27	ZBTB2 (ENSUMAG00000002240) #28	RMND1 (ENSUMAG00000002220) #29	ENSUMAG00000002214 #30	ENSUMAG00000002206 #30	CCDC170 (ENSUMAG00000002190) #31	ENSUMAG00000002176 #32	ENSUMAG00000001138 #33	ENSUMAG00000000885	ENSUMAG00000000085 #33	ENSUMAG00000024192 #33	MYCT1 (ENSUMAG00000024191) #34	VIP (ENSUMAG00000024190) #35
Giant Panda	MODERN SPECIES	1	SASH1 (ENSAMEG00000018291)	UST (ENSAMEG00000018287)	TAB2 (ENSAMEG00000018285)	ENSAMEG00000018283	PPIL4 (ENSAMEG00000018278) #7	GINM1 (ENSAMEG00000018277) #8	KATNA1 (ENSAMEG00000018275) #9	LATS1 (ENSAMEG00000018273) #10	ENSAMEG00000029494	NUP43 (ENSAMEG00000018267) #11	PCMT1 (ENSAMEG00000018264) #12	LRP11 (ENSAMEG00000028001) #13	ENSAMEG00000018260 #19	ENSAMEG00000027911 #20	ENSAMEG00000003274 #21	PLEKHG1 (ENSAMEG00000003289) #22	ENSAMEG00000027298	MTHFD1L (ENSAMEG00000003323) #24	AKAP12 (ENSAMEG00000011101) #27	ZBTB2 (ENSAMEG00000023899) #28	RMND1 (ENSAMEG00000011087) #29	ARMT1 (ENSAMEG00000024514) #30	CCDC170 (ENSAMEG00000011074) #31	ESR1 (ENSAMEG00000011072) #32	SYNE1 (ENSAMEG00000010887) #33	MYCT1 (ENSAMEG00000025534) #34	VIP (ENSAMEG00000010871) #35	FBXO5 (ENSAMEG00000030250) #36	MTRF1L (ENSAMEG00000001252) #37	RGS17 (ENSAMEG00000001249)	OPRM1 (ENSAMEG00000010364)
Mustelinae	ANCESTRAL SPECIES	26	ENSGT00940000156987	ENSGT00940000155676	ENSGT00940000154317.a.b	ENSGT00940000162991	ENSGT00940000162821	ENSGT00390000006522.b	ENSGT00390000003880.b.b	ENSGT01030000234610.a.b	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.u.a.b #19	ENSGT01100000263517.b.d.m.a.a.a.a.c.k #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.u.a.a.a #19	ENSGT01030000235909	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.u.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Ferret	MODERN SPECIES	201	NT5DC1 (ENSMPUG00000010294)	COL10A1 (ENSMPUG00000010327)	TSPYL4 (ENSMPUG00000019131)	TSPYL1 (ENSMPUG00000019136)	DSE (ENSMPUG00000010332)	CALHM5 (ENSMPUG00000010338)	ENSMPUG00000010344 #19	ENSMPUG00000010351 #14	ENSMPUG00000010367	ENSMPUG00000010372 #19	ENSMPUG00000010376	ENSMPUG00000010380 #19	ENSMPUG00000010393	ENSMPUG00000019141	IYD (ENSMPUG00000010397) #21	PLEKHG1 (ENSMPUG00000010404) #22	ENSMPUG00000010410	MTHFD1L (ENSMPUG00000010414) #24	ENSMPUG00000010428	ENSMPUG00000010433	AKAP12 (ENSMPUG00000010439) #27	ZBTB2 (ENSMPUG00000010444) #28	RMND1 (ENSMPUG00000010450) #29	ARMT1 (ENSMPUG00000010459) #30	CCDC170 (ENSMPUG00000010462) #31	ESR1 (ENSMPUG00000010481) #32	SYNE1 (ENSMPUG00000010485) #33	MYCT1 (ENSMPUG00000010542) #34	VIP (ENSMPUG00000010545) #35	FBXO5 (ENSMPUG00000010553) #36	MTRF1L (ENSMPUG00000010577) #37
American mink	MODERN SPECIES	4	COL10A1 (ENSNVIG00000006451)	TSPYL4 (ENSNVIG00000006466)	DSE (ENSNVIG00000006494)	ENSNVIG00000006528	CALHM5 (ENSNVIG00000006537)	ENSNVIG00000006541 #19	ENSNVIG00000006546 #19	ENSNVIG00000006567 #14	ENSNVIG00000006590 #14	ENSNVIG00000006632 #19	ENSNVIG00000006638 #19	ENSNVIG00000006654 #19	PPP1R14C (ENSNVIG00000006672) #20	IYD1 (ENSNVIG00000006683) #21	ENSNVIG00000006714	PLEKHG1 (ENSNVIG00000006728) #22	MTHFD1L (ENSNVIG00000006768) #24	AKAP12 (ENSNVIG00000006843) #27	ZBTB2 (ENSNVIG00000006849) #28	RMND1 (ENSNVIG00000006864) #29	ARMT1 (ENSNVIG00000006911) #30	CCDC170 (ENSNVIG00000006940) #31	ESR1 (ENSNVIG00000006962) #32	SYNE1 (ENSNVIG00000007105) #33	MYCT1 (ENSNVIG00000008075) #34	VIP (ENSNVIG00000008088) #35	FBXO5 (ENSNVIG00000008114) #36	MTRF1L (ENSNVIG00000008138) #37	RGS17 (ENSNVIG00000008185)	OPRM1 (ENSNVIG00000008214)	IPCEF1 (ENSNVIG00000008312)
Canidae	ANCESTRAL SPECIES	34	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00950000182802.B.a.a.a.b.a.a	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236
Canis_lupus	ANCESTRAL SPECIES		ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT00390000015489.q.a.f.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00950000182802.B.a.a.a.b.a.a	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236
Dog	MODERN SPECIES		ZC3H12D (ENSCAFG00845018177)	PPIL4 (ENSCAFG00845018247) #7	GINM1 (ENSCAFG00845018387) #8	KATNA1 (ENSCAFG00845018545) #9	LATS1 (ENSCAFG00845018656) #10	ENSCAFG00845018728	NUP43 (ENSCAFG00845018774) #11	PCMT1 (ENSCAFG00845018925) #12	LRP11 (ENSCAFG00845019246) #13	ENSCAFG00845019312 #14	ENSCAFG00845019515	ENSCAFG00845019534 #19	ENSCAFG00845019584	PPP1R14C (ENSCAFG00845019656) #20	IYD (ENSCAFG00845019736) #21	PLEKHG1 (ENSCAFG00845019814) #22	MTHFD1L (ENSCAFG00845020116) #24	AKAP12 (ENSCAFG00845021174) #27	ZBTB2 (ENSCAFG00845021289) #28	RMND1 (ENSCAFG00845000007) #29	ARMT1 (ENSCAFG00845000014) #30	CCDC170 (ENSCAFG00845000020) #31	ESR1 (ENSCAFG00845000028) #32	SYNE1 (ENSCAFG00845000043) #33	ENSCAFG00845000071	MYCT1 (ENSCAFG00845000077) #34	VIP (ENSCAFG00845000085) #35	ENSCAFG00845000096	FBXO5 (ENSCAFG00845000104) #36	MTRF1L (ENSCAFG00845000120) #37	RGS17 (ENSCAFG00845000141)
Dingo	MODERN SPECIES	125	ENSCAFG00020013491	UST (ENSCAFG00020013516)	TAB2 (ENSCAFG00020013536)	ENSCAFG00020013539	PPIL4 (ENSCAFG00020013550) #7	GINM1 (ENSCAFG00020013825) #8	KATNA1 (ENSCAFG00020013829) #9	LATS1 (ENSCAFG00020013895) #10	NUP43 (ENSCAFG00020013901) #11	PCMT1 (ENSCAFG00020013908) #12	LRP11 (ENSCAFG00020013981) #13	ENSCAFG00020014007 #14	ENSCAFG00020014013	PPP1R14C (ENSCAFG00020014021) #20	IYD (ENSCAFG00020014043) #21	PLEKHG1 (ENSCAFG00020014055) #22	ENSCAFG00020014068 #24	ENSCAFG00020014133 #24	ENSCAFG00020014694	AKAP12 (ENSCAFG00020014695) #27	ZBTB2 (ENSCAFG00020014696) #28	RMND1 (ENSCAFG00020014697) #29	ENSCAFG00020014700 #30	ENSCAFG00020014702 #30	CCDC170 (ENSCAFG00020014704) #31	ESR1 (ENSCAFG00020014707) #32	ENSCAFG00020014804 #33	ENSCAFG00020014881 #33	MYCT1 (ENSCAFG00020014923) #34	VIP (ENSCAFG00020014925) #35	FBXO5 (ENSCAFG00020014935) #36
Red fox	MODERN SPECIES	26	TAB2 (ENSVVUG00000005075)	ENSVVUG00000005116	PPIL4 (ENSVVUG00000005119) #7	ENSVVUG00000005122	GINM1 (ENSVVUG00000005128) #8	KATNA1 (ENSVVUG00000005135) #9	LATS1 (ENSVVUG00000005155) #10	NUP43 (ENSVVUG00000005168) #11	PCMT1 (ENSVVUG00000005178) #12	ENSVVUG00000005185 #13	ENSVVUG00000005187 #14	ENSVVUG00000005191	ENSVVUG00000005195 #19	PPP1R14C (ENSVVUG00000005202) #20	IYD (ENSVVUG00000005224) #21	PLEKHG1 (ENSVVUG00000005233) #22	ENSVVUG00000005287 #24	ENSVVUG00000005367 #24	AKAP12 (ENSVVUG00000006099) #27	ENSVVUG00000006108	ZBTB2 (ENSVVUG00000006110) #28	RMND1 (ENSVVUG00000006114) #29	ARMT1 (ENSVVUG00000006134) #30	CCDC170 (ENSVVUG00000006168) #31	ESR1 (ENSVVUG00000006190) #32	ENSVVUG00000006396 #33	ENSVVUG00000006984 #33	MYCT1 (ENSVVUG00000007392) #34	VIP (ENSVVUG00000007395) #35	ENSVVUG00000007408	FBXO5 (ENSVVUG00000007414) #36
Felidae	ANCESTRAL SPECIES	5	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT01040000242984	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Panthera	ANCESTRAL SPECIES	7	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT01040000242984	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Panthera_a	ANCESTRAL SPECIES	4	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT01040000242984	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
lion	MODERN SPECIES	5	TAB2 (ENSPLOG00000020867)	ZC3H12D (ENSPLOG00000020914)	PPIL4 (ENSPLOG00000020968) #7	GINM1 (ENSPLOG00000021016) #8	KATNA1 (ENSPLOG00000021067) #9	LATS1 (ENSPLOG00000021118) #10	ENSPLOG00000021149	NUP43 (ENSPLOG00000021172) #11	PCMT1 (ENSPLOG00000021244) #12	LRP11 (ENSPLOG00000021323) #13	ENSPLOG00000021375 #14	PPP1R14C (ENSPLOG00000021411) #20	ENSPLOG00000021433	IYD (ENSPLOG00000021448) #21	ENSPLOG00000021471	PLEKHG1 (ENSPLOG00000021507) #22	MTHFD1L (ENSPLOG00000021591) #24	AKAP12 (ENSPLOG00000000322) #27	ZBTB2 (ENSPLOG00000000341) #28	RMND1 (ENSPLOG00000000352) #29	ARMT1 (ENSPLOG00000000374) #30	CCDC170 (ENSPLOG00000000397) #31	ESR1 (ENSPLOG00000000444) #32	SYNE1 (ENSPLOG00000001040) #33	MYCT1 (ENSPLOG00000002023) #34	VIP (ENSPLOG00000002035) #35	ENSPLOG00000002097 #37	RGS17 (ENSPLOG00000002174)	OPRM1 (ENSPLOG00000002202)	IPCEF1 (ENSPLOG00000002238)	CNKSR3 (ENSPLOG00000002266)
leopard	MODERN SPECIES	140													ENSPPRG00000008471	PPP1R14C (ENSPPRG00000008482) #20	IYD (ENSPPRG00000008491) #21	PLEKHG1 (ENSPPRG00000008781) #22	MTHFD1L (ENSPPRG00000009075) #24	AKAP12 (ENSPPRG00000009132) #27	ZBTB2 (ENSPPRG00000009222) #28	RMND1 (ENSPPRG00000009267) #29	ARMT1 (ENSPPRG00000009551) #30	CCDC170 (ENSPPRG00000009606) #31	ESR1 (ENSPPRG00000009745) #32	ENSPPRG00000009951 #33	ENSPPRG00000010874 #33	MYCT1 (ENSPPRG00000010948) #34	VIP (ENSPPRG00000010990) #35	FBXO5 (ENSPPRG00000011003) #36	MTRF1L (ENSPPRG00000011039) #37	RGS17 (ENSPPRG00000011102)
Cat	MODERN SPECIES	236	PPIL4 (ENSFCAG00000046720) #7	GINM1 (ENSFCAG00000011292) #8	KATNA1 (ENSFCAG00000011293) #9	LATS1 (ENSFCAG00000023857) #10	ENSFCAG00000041389	NUP43 (ENSFCAG00000031791) #11	PCMT1 (ENSFCAG00000027352) #12	LRP11 (ENSFCAG00000045912) #13	ENSFCAG00000005672 #14	ENSFCAG00000049506 #19	ENSFCAG00000047793 #19	PPP1R14C (ENSFCAG00000035894) #20	ENSFCAG00000023771	IYD (ENSFCAG00000003732) #21	ENSFCAG00000052538	PLEKHG1 (ENSFCAG00000029811) #22	MTHFD1L (ENSFCAG00000003673) #24	AKAP12 (ENSFCAG00000041794) #27	ZBTB2 (ENSFCAG00000040972) #28	RMND1 (ENSFCAG00000010205) #29	ARMT1 (ENSFCAG00000010206) #30	CCDC170 (ENSFCAG00000010207) #31	ESR1 (ENSFCAG00000031492) #32	SYNE1 (ENSFCAG00000000049) #33	MYCT1 (ENSFCAG00000028294) #34	VIP (ENSFCAG00000002179) #35	FBXO5 (ENSFCAG00000030126) #36	MTRF1L (ENSFCAG00000037854) #37	RGS17 (ENSFCAG00000037833)	OPRM1 (ENSFCAG00000005359)	IPCEF1 (ENSFCAG00000024018)
Laurasiatheria_c	ANCESTRAL SPECIES	6	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Chiroptera	ANCESTRAL SPECIES	3	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Megabat	MODERN SPECIES	205																PLEKHG1 (ENSPVAG00000005309) #22	MTHFD1L (ENSPVAG00000005315) #24
Microchiroptera	ANCESTRAL SPECIES	4	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00900000143690	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.d.b #19	ENSGT01100000263517.b.d.m.a.a.a.a.c #14	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Microbat	MODERN SPECIES	1428														PPP1R14C (ENSMLUG00000023245) #20	IYD (ENSMLUG00000008377) #21	PLEKHG1 (ENSMLUG00000016927) #22	MTHFD1L (ENSMLUG00000005296) #24
Greater horseshoe bat	MODERN SPECIES	21	KATNA1 (ENSRFEG00010014679) #9	LATS1 (ENSRFEG00010014763) #10	ENSRFEG00010014829	NUP43 (ENSRFEG00010014897) #11	PCMT1 (ENSRFEG00010015151) #12	LRP11 (ENSRFEG00010015632) #13	ENSRFEG00010015741 #19	ENSRFEG00010015765 #14	ENSRFEG00010015855 #14	ENSRFEG00010015921 #19	ENSRFEG00010016156 #19	PPP1R14C (ENSRFEG00010016410) #20	IYD (ENSRFEG00010016480) #21	ENSRFEG00010016530	ENSRFEG00010016588	PLEKHG1 (ENSRFEG00010016656) #22	MTHFD1L (ENSRFEG00010016718) #24	ENSRFEG00010017181	AKAP12 (ENSRFEG00010017239) #27	ZBTB2 (ENSRFEG00010017257) #28	RMND1 (ENSRFEG00010017312) #29	ARMT1 (ENSRFEG00010017409) #30	CCDC170 (ENSRFEG00010017486) #31	ESR1 (ENSRFEG00010017671) #32	SYNE1 (ENSRFEG00010017835) #33	MYCT1 (ENSRFEG00010018323) #34	VIP (ENSRFEG00010018363) #35	ENSRFEG00010018375	ENSRFEG00010018397	FBXO5 (ENSRFEG00010018406) #36	MTRF1L (ENSRFEG00010018467) #37
Equus	ANCESTRAL SPECIES	46	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.c.p.b #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.bb.b #19	ENSGT01100000263517.b.d.m.a.a.a.a.c.o #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.cb #19	ENSGT01100000263517.b.d.m.a.a.a.a.c.p.a #14	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.bb.a.b #19	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.bb.a.a #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b.bc #33	ENSGT00390000011642 #34	ENSGT01090000263352	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236
Donkey	MODERN SPECIES	20	ENSEASG00005036802	ENSEASG00005032238	ENSEASG00005032265	ENSEASG00005027781	ENSEASG00005027838	ENSEASG00005027669	ENSEASG00005028916	ENSEASG00005023074	PPIF (ENSEASG00005032195)	ZMIZ1 (ENSEASG00005023063)	ENSEASG00005023056	POLR3A (ENSEASG00005023053)	DLG5 (ENSEASG00005023049)	ENSEASG00005023024	ENSEASG00005016792 #21	ENSEASG00005016807 #22	MTHFD1L (ENSEASG00005017019) #24	AKAP12 (ENSEASG00005018740) #27	ZBTB2 (ENSEASG00005018742) #28	RMND1 (ENSEASG00005018744) #29	ARMT1 (ENSEASG00005031339) #30	CCDC170 (ENSEASG00005018748) #31	ESR1 (ENSEASG00005018755) #32	ENSEASG00005018807 #33	ENSEASG00005018835 #33	MYCT1 (ENSEASG00005031624) #34	ENSEASG00005037232	VIP (ENSEASG00005018861) #35	FBXO5 (ENSEASG00005018864) #36	MTRF1L (ENSEASG00005018866) #37	RGS17 (ENSEASG00005018868)
Horse	MODERN SPECIES	24	LATS1 (ENSECAG00000000891) #10	NUP43 (ENSECAG00000018413) #11	ENSECAG00000054669	ENSECAG00000054538	PCMT1 (ENSECAG00000005292) #12	LRP11 (ENSECAG00000026818) #13	ENSECAG00000037075 #14	ENSECAG00000033237 #19	ENSECAG00000047371 #14	ENSECAG00000036563 #19	ENSECAG00000003090 #14	ENSECAG00000059096 #19	ENSECAG00000037408 #19	ENSECAG00000034476 #20	IYD (ENSECAG00000018766) #21	PLEKHG1 (ENSECAG00000007095) #22	MTHFD1L (ENSECAG00000001166) #24	AKAP12 (ENSECAG00000022166) #27	ZBTB2 (ENSECAG00000021762) #28	RMND1 (ENSECAG00000018207) #29	ARMT1 (ENSECAG00000015349) #30	CCDC170 (ENSECAG00000013130) #31	ESR1 (ENSECAG00000022441) #32	SYNE1 (ENSECAG00000017353) #33	ENSECAG00000057509 #33	MYCT1 (ENSECAG00000015960) #34	ENSECAG00000059138	VIP (ENSECAG00000013586) #35	FBXO5 (ENSECAG00000011630) #36	MTRF1L (ENSECAG00000002759) #37	RGS17 (ENSECAG00000022231)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000157723 #22
Hedgehog	MODERN SPECIES	2109																ENSEEUG00000001313 #22
Common shrew	MODERN SPECIES	1509																PLEKHG1 (ENSSARG00000006200) #22
Atlantogenata	ANCESTRAL SPECIES	51	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.d #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Xenarthra	ANCESTRAL SPECIES	435																ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.b #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35
Sloth	MODERN SPECIES	1816																PLEKHG1 (ENSCHOG00000009687) #22
Armadillo	MODERN SPECIES	1163																PLEKHG1 (ENSDNOG00000031797) #22	ENSDNOG00000034617 #24
Afrotheria	ANCESTRAL SPECIES	55	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.d #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.a.a ##30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Afrotheria_a	ANCESTRAL SPECIES	51	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT01100000263517.b.d.m.a.a.a.a.d #19	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.a.a ##30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Elephant	MODERN SPECIES	1	SAMD5 (ENSLAFG00000018394)	SASH1 (ENSLAFG00000016939)	UST (ENSLAFG00000010257)	TAB2 (ENSLAFG00000028106)	ENSLAFG00000021535	PPIL4 (ENSLAFG00000026804) #7	GINM1 (ENSLAFG00000005075) #8	KATNA1 (ENSLAFG00000005080) #9	LATS1 (ENSLAFG00000005083) #10	NUP43 (ENSLAFG00000012413) #11	PCMT1 (ENSLAFG00000012417) #12	LRP11 (ENSLAFG00000022229) #13	ENSLAFG00000023055 #19	PPP1R14C (ENSLAFG00000015503) #20	IYD (ENSLAFG00000004806) #21	PLEKHG1 (ENSLAFG00000002415) #22	MTHFD1L (ENSLAFG00000001635) #24	AKAP12 (ENSLAFG00000006275) #27	ZBTB2 (ENSLAFG00000001805) #28	RMND1 (ENSLAFG00000017983) #29	ARMT1 (ENSLAFG00000007338) ##30	CCDC170 (ENSLAFG00000012458) #31	ENSLAFG00000015250 #32	SYNE1 (ENSLAFG00000008554) #33	MYCT1 (ENSLAFG00000017921) #34	VIP (ENSLAFG00000006337) #35	FBXO5 (ENSLAFG00000001713) #36	MTRF1L (ENSLAFG00000004022) #37	RGS17 (ENSLAFG00000004025)	OPRM1 (ENSLAFG00000002597)	ENSLAFG00000031150
Hyrax	MODERN SPECIES	1625																PLEKHG1 (ENSPCAG00000006552) #22
Tenrec	MODERN SPECIES	2018																PLEKHG1 (ENSETEG00000018782) #22
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Opossum	DUPLICATION
Opossum	MODERN SPECIES	1	SAMD5 (ENSMODG00000045013)	ENSMODG00000016847	UST (ENSMODG00000016836)	TAB2 (ENSMODG00000016831)	ENSMODG00000016829	PPIL4 (ENSMODG00000016825) #7	GINM1 (ENSMODG00000016822) #8	KATNA1 (ENSMODG00000016819) #9	LATS1 (ENSMODG00000016812) #10	ENSMODG00000048057 #11	ENSMODG00000016808 #11	PCMT1 (ENSMODG00000016804) #12	LRP11 (ENSMODG00000016792) #13	ENSMODG00000016787 #20	IYD (ENSMODG00000016781) #21	ENSMODG00000041763 #22	ENSMODG00000016771 #22	MTHFD1L (ENSMODG00000016765) #24	ENSMODG00000046586 #27	ZBTB2 (ENSMODG00000040530) #28	RMND1 (ENSMODG00000016750) #29	ARMT1 (ENSMODG00000028240) #30	CCDC170 (ENSMODG00000016728) #31	ESR1 (ENSMODG00000016719) #32	SYNE1 (ENSMODG00000016253) #33	MYCT1 (ENSMODG00000008518) #34	VIP (ENSMODG00000008511) #35	FBXO5 (ENSMODG00000008501) #36	MTRF1L (ENSMODG00000008487) #37	RGS17 (ENSMODG00000008463)	ENSMODG00000042566
Opossum	MODERN SPECIES	1	ENSMODG00000016847	UST (ENSMODG00000016836)	TAB2 (ENSMODG00000016831)	ENSMODG00000016829	PPIL4 (ENSMODG00000016825) #7	GINM1 (ENSMODG00000016822) #8	KATNA1 (ENSMODG00000016819) #9	LATS1 (ENSMODG00000016812) #10	ENSMODG00000048057 #11	ENSMODG00000016808 #11	PCMT1 (ENSMODG00000016804) #12	LRP11 (ENSMODG00000016792) #13	ENSMODG00000016787 #20	IYD (ENSMODG00000016781) #21	ENSMODG00000041763 #22	ENSMODG00000016771 #22	MTHFD1L (ENSMODG00000016765) #24	ENSMODG00000046586 #27	ZBTB2 (ENSMODG00000040530) #28	RMND1 (ENSMODG00000016750) #29	ARMT1 (ENSMODG00000028240) #30	CCDC170 (ENSMODG00000016728) #31	ESR1 (ENSMODG00000016719) #32	SYNE1 (ENSMODG00000016253) #33	MYCT1 (ENSMODG00000008518) #34	VIP (ENSMODG00000008511) #35	FBXO5 (ENSMODG00000008501) #36	MTRF1L (ENSMODG00000008487) #37	RGS17 (ENSMODG00000008463)	ENSMODG00000042566	OPRM1 (ENSMODG00000008382)
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388.h	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00960000188774	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Diprotodontia	ANCESTRAL SPECIES	15	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388.h	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.c #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00960000188774	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
Wallaby	MODERN SPECIES	2887																ENSMEUG00000009023 #22
Diprotodontia_a	ANCESTRAL SPECIES	43	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388.h	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023.c #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00960000188774	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000154428.b
koala	MODERN SPECIES	25	ADGB (ENSPCIG00000011140)	STXBP5 (ENSPCIG00000004560)	SAMD5 (ENSPCIG00000031367)	SASH1 (ENSPCIG00000004499)	UST (ENSPCIG00000025552)	TAB2 (ENSPCIG00000025555)	PPIL4 (ENSPCIG00000025561) #7	GINM1 (ENSPCIG00000025566) #8	KATNA1 (ENSPCIG00000025567) #9	LATS1 (ENSPCIG00000025569) #10	NUP43 (ENSPCIG00000025570) #11	PCMT1 (ENSPCIG00000025571) #12	LRP11 (ENSPCIG00000025572) #13	PPP1R14C (ENSPCIG00000025574) #20	IYD (ENSPCIG00000000102) #21	ENSPCIG00000036024 #22	MTHFD1L (ENSPCIG00000000340) #24	ENSPCIG00000000275 #27	ZBTB2 (ENSPCIG00000000317) #28	RMND1 (ENSPCIG00000015430) #29	ARMT1 (ENSPCIG00000015424) #30	CCDC170 (ENSPCIG00000015420) #31	ENSPCIG00000015401 #32	ENSPCIG00000026913 #33	ENSPCIG00000035321 #33	ENSPCIG00000037024	ENSPCIG00000026821 #33	MYCT1 (ENSPCIG00000026720) #34	ENSPCIG00000026717	ENSPCIG00000008468	FBXO5 (ENSPCIG00000027501) #36
Common wonbat	MODERN SPECIES	776		SAMD5 (ENSVURG00010002165)	SASH1 (ENSVURG00010002129)	UST (ENSVURG00010002084)	TAB2 (ENSVURG00010002055)	ENSVURG00010002031	PPIL4 (ENSVURG00010002015) #7	GINM1 (ENSVURG00010001985) #8	KATNA1 (ENSVURG00010001974) #9	LATS1 (ENSVURG00010001959) #10	NUP43 (ENSVURG00010001929) #11	PCMT1 (ENSVURG00010001919) #12	ENSVURG00010001905 #13	PPP1R14C (ENSVURG00010001870) #20	IYD (ENSVURG00010001839) #21	PLEKHG1 (ENSVURG00010001804) #22	ENSVURG00010001784	MTHFD1L (ENSVURG00010001735) #24	RMND1 (ENSVURG00010001696) #29	ENSVURG00010001687 #30	ENSVURG00010001665 #30	ESR1 (ENSVURG00010001622) #32	ENSVURG00010001445 #33	ENSVURG00010001331 #33
Tasmanian devil	MODERN SPECIES	3	SAMD5 (ENSSHAG00000028775)	SASH1 (ENSSHAG00000013003)	UST (ENSSHAG00000032035)	TAB2 (ENSSHAG00000016804)	ENSSHAG00000026461	ENSSHAG00000017000	PPIL4 (ENSSHAG00000017140) #7	GINM1 (ENSSHAG00000020912) #8	KATNA1 (ENSSHAG00000017296) #9	LATS1 (ENSSHAG00000017388) #10	NUP43 (ENSSHAG00000022940) #11	PCMT1 (ENSSHAG00000023309) #12	LRP11 (ENSSHAG00000027360) #13	PPP1R14C (ENSSHAG00000017832) #20	IYD (ENSSHAG00000005031) #21	PLEKHG1 (ENSSHAG00000009584) #22	MTHFD1L (ENSSHAG00000010362) #24	ENSSHAG00000012930 #27	RMND1 (ENSSHAG00000020900) #29	ZBTB2 (ENSSHAG00000013043) #28	ARMT1 (ENSSHAG00000026323) #30	ENSSHAG00000013619	CCDC170 (ENSSHAG00000013818) #31	ESR1 (ENSSHAG00000015240) #32	SYNE1 (ENSSHAG00000016595) #33	MYCT1 (ENSSHAG00000028412) #34	ENSSHAG00000031731	FBXO5 (ENSSHAG00000017971) #36	MTRF1L (ENSSHAG00000017997) #37	RGS17 (ENSSHAG00000020953)	OPRM1 (ENSSHAG00000005181)
Platypus	MODERN SPECIES	11	STXBP5 (ENSOANG00000012319)	SASH1 (ENSOANG00000012316)	UST (ENSOANG00000012315)	TAB2 (ENSOANG00000001062)	ENSOANG00000046774	ENSOANG00000041028	PPIL4 (ENSOANG00000001063) #7	GINM1 (ENSOANG00000001064) #8	KATNA1 (ENSOANG00000001065) #9	LATS1 (ENSOANG00000001067) #10	NUP43 (ENSOANG00000001068) #11	ENSOANG00000001066 #12	ENSOANG00000001069 #13	PPP1R14C (ENSOANG00000043661) #20	IYD (ENSOANG00000039425) #21	PLEKHG1 (ENSOANG00000003321) #22	MTHFD1L (ENSOANG00000021726) #24	ENSOANG00000039295 #27	ZBTB2 (ENSOANG00000003326) #28	RMND1 (ENSOANG00000003327) #29	ARMT1 (ENSOANG00000048494) #30	CCDC170 (ENSOANG00000003330) #31	ESR1 (ENSOANG00000040685) #32	SYNE1 (ENSOANG00000015557) #33	ENSOANG00000037205	ENSOANG00000011951	RSPH3 (ENSOANG00000021228)	EZR (ENSOANG00000001032)	ENSOANG00000001031	DYNLT1 (ENSOANG00000005209)	TMEM181 (ENSOANG00000010789)
Sauria	ANCESTRAL SPECIES	1	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00960000189587	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236
Lepidosauria	ANCESTRAL SPECIES		ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00960000189587	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236
Episquamata	ANCESTRAL SPECIES		ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00960000189587	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236
Laterata	ANCESTRAL SPECIES	4	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133.j #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000163429.A
Common wall lizard	MODERN SPECIES	11	ENSPMRG00000010344	ENSPMRG00000010364	UST (ENSPMRG00000010370)	TAB2 (ENSPMRG00000010381)	ZC3H12D (ENSPMRG00000010385)	PPIL4 (ENSPMRG00000010393) #7	GINM1 (ENSPMRG00000010401) #8	KATNA1 (ENSPMRG00000010410) #9	LATS1 (ENSPMRG00000010425) #10	NUP43 (ENSPMRG00000010435) #11	PCMT1 (ENSPMRG00000010445) #12	LRP11 (ENSPMRG00000010457) #13	ENSPMRG00000010469	PPP1R14C (ENSPMRG00000010476) #20	IYD (ENSPMRG00000010480) #21	PLEKHG1 (ENSPMRG00000010487) #22	MTHFD1L (ENSPMRG00000010497) #24	AKAP12 (ENSPMRG00000010510) #27	ZBTB2 (ENSPMRG00000010513) #28	RMND1 (ENSPMRG00000010516) #29	ENSPMRG00000010520 #30	ENSPMRG00000010523 #30	ENSPMRG00000010528 #30	CCDC170 (ENSPMRG00000010531) #31	ENSPMRG00000010538 #32	ENSPMRG00000010543 #33	ENSPMRG00000010555 #33	ENSPMRG00000010559	ENSPMRG00000010603 #33	MYCT1 (ENSPMRG00000010748) #34	VIP (ENSPMRG00000010751) #35
Argentine black and white tegu	MODERN SPECIES	2	SAMD5 (ENSSMRG00000022647)	ENSSMRG00000022645	SASH1 (ENSSMRG00000022643)	UST (ENSSMRG00000022642)	TAB2 (ENSSMRG00000022641)	ZC3H12D (ENSSMRG00000022640)	PPIL4 (ENSSMRG00000022639) #7	GINM1 (ENSSMRG00000022638) #8	KATNA1 (ENSSMRG00000022637) #9	LATS1 (ENSSMRG00000022636) #10	NUP43 (ENSSMRG00000022635) #11	PCMT1 (ENSSMRG00000022634) #12	LRP11 (ENSSMRG00000022633) #13	PPP1R14C (ENSSMRG00000022632) #20	IYD (ENSSMRG00000022630) #21	PLEKHG1 (ENSSMRG00000022629) #22	MTHFD1L (ENSSMRG00000022628) #24	AKAP12 (ENSSMRG00000022627) #27	ZBTB2 (ENSSMRG00000022626) #28	RMND1 (ENSSMRG00000022625) #29	ARMT1 (ENSSMRG00000022624) #30	CCDC170 (ENSSMRG00000022623) #31	ESR1 (ENSSMRG00000022622) #32	ENSSMRG00000022621 #33	ENSSMRG00000022490 #33	MYCT1 (ENSSMRG00000022489) #34	VIP (ENSSMRG00000022488) #35	FBXO5 (ENSSMRG00000022487) #36	MTRF1L (ENSSMRG00000022486) #37	RGS17 (ENSSMRG00000022485)	ENSSMRG00000022481
Toxicofera	ANCESTRAL SPECIES		ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00960000189587	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236
Elapidae	ANCESTRAL SPECIES		ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00960000189587	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133.l #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236
Elapidae_a	ANCESTRAL SPECIES	34	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24
Acanthophiinae	ANCESTRAL SPECIES	34	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24
Mainland tiger snake	MODERN SPECIES	14	SAMD5 (ENSNSUG00000010742)	SASH1 (ENSNSUG00000010745)	UST (ENSNSUG00000010746)	TAB2 (ENSNSUG00000010766)	ENSNSUG00000010768	PPIL4 (ENSNSUG00000010769) #7	GINM1 (ENSNSUG00000010782) #8	KATNA1 (ENSNSUG00000010783) #9	LATS1 (ENSNSUG00000010785) #10	NUP43 (ENSNSUG00000010787) #11	PCMT1 (ENSNSUG00000010789) #12	ENSNSUG00000010790	LRP11 (ENSNSUG00000010792) #13	PPP1R14C (ENSNSUG00000010793) #20	IYD (ENSNSUG00000010796) #21	PLEKHG1 (ENSNSUG00000010798) #22	MTHFD1L (ENSNSUG00000010804) #24
Eastern brown snake	MODERN SPECIES	28	STXBP5 (ENSPTXG00000012225)	SAMD5 (ENSPTXG00000012231)	SASH1 (ENSPTXG00000012232)	UST (ENSPTXG00000012234)	TAB2 (ENSPTXG00000012235)	ENSPTXG00000012236	PPIL4 (ENSPTXG00000012237) #7	GINM1 (ENSPTXG00000012238) #8	KATNA1 (ENSPTXG00000012239) #9	LATS1 (ENSPTXG00000012240) #10	NUP43 (ENSPTXG00000012241) #11	PCMT1 (ENSPTXG00000012242) #12	LRP11 (ENSPTXG00000012243) #13	PPP1R14C (ENSPTXG00000012244) #20	IYD (ENSPTXG00000012245) #21	PLEKHG1 (ENSPTXG00000012246) #22	MTHFD1L (ENSPTXG00000012263) #24
Blue-lipped sea krait	MODERN SPECIES	4861																PLEKHG1 (ENSLLTG00000013269) #22
Indian cobra	MODERN SPECIES		SAMD5 (ENSNNAG00000000229)	ENSNNAG00000000227	SASH1 (ENSNNAG00000000222)	UST (ENSNNAG00000000217)	TAB2 (ENSNNAG00000000214)	ZC3H12D (ENSNNAG00000000211)	PPIL4 (ENSNNAG00000000206) #7	GINM1 (ENSNNAG00000000199) #8	KATNA1 (ENSNNAG00000000190) #9	LATS1 (ENSNNAG00000000182) #10	NUP43 (ENSNNAG00000000179) #11	PCMT1 (ENSNNAG00000000170) #12	LRP11 (ENSNNAG00000000167) #13	PPP1R14C (ENSNNAG00000000163) #20	IYD (ENSNNAG00000000160) #21	PLEKHG1 (ENSNNAG00000000156) #22	MTHFD1L (ENSNNAG00000000154) #24	ENSNNAG00000000153 #27	ZBTB2 (ENSNNAG00000000152) #28	RMND1 (ENSNNAG00000000151) #29	ARMT1 (ENSNNAG00000000149) #30	CCDC170 (ENSNNAG00000000148) #31	ESR1 (ENSNNAG00000000145) #32	ENSNNAG00000000142 #33	MYCT1 (ENSNNAG00000000136) #34	VIP (ENSNNAG00000000134) #35	FBXO5 (ENSNNAG00000000132) #36	MTRF1L (ENSNNAG00000000123) #37	RGS17 (ENSNNAG00000000122)	ENSNNAG00000000120	ENSNNAG00000000118
Lizard	MODERN SPECIES	873			ENSACAG00000039439	TAB2 (ENSACAG00000006999)	ZC3H12D (ENSACAG00000006984)	PPIL4 (ENSACAG00000006936) #7	ENSACAG00000006919 #8	KATNA1 (ENSACAG00000006866) #9	LATS1 (ENSACAG00000006840) #10	NUP43 (ENSACAG00000006777) #11	PCMT1 (ENSACAG00000006734) #12	LRP11 (ENSACAG00000006719) #13	PPP1R14C (ENSACAG00000006718) #20	IYD (ENSACAG00000006702) #21	ENSACAG00000045327	PLEKHG1 (ENSACAG00000006603) #22	MTHFD1L (ENSACAG00000006340) #24	ENSACAG00000045552 #27	ZBTB2 (ENSACAG00000006317) #28	RMND1 (ENSACAG00000006275) #29	ARMT1 (ENSACAG00000006306) #30	CCDC170 (ENSACAG00000006265) #31	esr1 (ENSACAG00000006213) #32	ENSACAG00000037197	ENSACAG00000005645 #33
tuatara	MODERN SPECIES	207	SASH1 (ENSSPUG00000005517)	UST (ENSSPUG00000005540)	TAB2 (ENSSPUG00000005607)	ENSSPUG00000005636	ENSSPUG00000005643	PPIL4 (ENSSPUG00000005655) #7	GINM1 (ENSSPUG00000005672) #8	KATNA1 (ENSSPUG00000005705) #9	ENSSPUG00000005722	LATS1 (ENSSPUG00000005751) #10	ENSSPUG00000005769 #11	PCMT1 (ENSSPUG00000005816) #12	LRP11 (ENSSPUG00000005827) #13	PPP1R14C (ENSSPUG00000005841) #20	IYD (ENSSPUG00000005921) #21	ENSSPUG00000005940 #22	MTHFD1L (ENSSPUG00000005964) #24	ZBTB2 (ENSSPUG00000006004) #28	RMND1 (ENSSPUG00000006020) #29	ARMT1 (ENSSPUG00000006097) #30	CCDC170 (ENSSPUG00000006108) #31	ENSSPUG00000006170 #32	ESR1 (ENSSPUG00000006184) #32	CTNND2 (ENSSPUG00000006205)	DAP (ENSSPUG00000006225)	ENSSPUG00000006234	SNRNP48 (ENSSPUG00000006257)	ROPN1L (ENSSPUG00000006286)	MARCHF6 (ENSSPUG00000006375)
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00960000189587	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236
Archosauria	ANCESTRAL SPECIES	3	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00960000189587	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236
Aves	ANCESTRAL SPECIES	12	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00960000189587	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236
Neognathae	ANCESTRAL SPECIES	2	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00960000189587	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00960000189587	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236
Neognathae_c	ANCESTRAL SPECIES	5	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000163429.A
Golden eagle	MODERN SPECIES	24	STXBP5 (ENSACCG00020005265)	SAMD5 (ENSACCG00020005315)	SASH1 (ENSACCG00020005339)	UST (ENSACCG00020005381)	TAB2 (ENSACCG00020005405)	ZC3H12D (ENSACCG00020005459)	PPIL4 (ENSACCG00020005495) #7	GINM1 (ENSACCG00020005522) #8	KATNA1 (ENSACCG00020005537) #9	LATS1 (ENSACCG00020005566) #10	NUP43 (ENSACCG00020005581) #11	PCMT1 (ENSACCG00020005602) #12	LRP11 (ENSACCG00020005620) #13	PPP1R14C (ENSACCG00020005640) #20	IYD (ENSACCG00020005672) #21	PLEKHG1 (ENSACCG00020005704) #22	MTHFD1L (ENSACCG00020005759) #24	AKAP12 (ENSACCG00020005819) #27	ZBTB2 (ENSACCG00020005841) #28	RMND1 (ENSACCG00020005297) #29	ARMT1 (ENSACCG00020005308) #30	CCDC170 (ENSACCG00020005320) #31	ESR1 (ENSACCG00020005342) #32	SYNE1 (ENSACCG00020006416) #33	MYCT1 (ENSACCG00020007328) #34	VIP (ENSACCG00020007352) #35	FBXO5 (ENSACCG00020007364) #36	MTRF1L (ENSACCG00020007439) #37	RGS17 (ENSACCG00020007480)	OPRM1 (ENSACCG00020007494)	ENSACCG00020007507
Kakapo	MODERN SPECIES	2	SAMD5 (ENSSHBG00005018670)	ENSSHBG00005018650	SASH1 (ENSSHBG00005018631)	UST (ENSSHBG00005018620)	TAB2 (ENSSHBG00005018609)	ZC3H12D (ENSSHBG00005018601)	PPIL4 (ENSSHBG00005018594) #7	GINM1 (ENSSHBG00005018590) #8	KATNA1 (ENSSHBG00005018585) #9	LATS1 (ENSSHBG00005018579) #10	NUP43 (ENSSHBG00005018573) #11	PCMT1 (ENSSHBG00005018568) #12	LRP11 (ENSSHBG00005018560) #13	PPP1R14C (ENSSHBG00005018557) #20	IYD (ENSSHBG00005018551) #21	PLEKHG1 (ENSSHBG00005018548) #22	ENSSHBG00005018545	MTHFD1L (ENSSHBG00005018498) #24	AKAP12 (ENSSHBG00005018480) #27	ZBTB2 (ENSSHBG00005018476) #28	RMND1 (ENSSHBG00005018472) #29	ARMT1 (ENSSHBG00005018468) #30	CCDC170 (ENSSHBG00005018463) #31	ESR1 (ENSSHBG00005018449) #32	SYNE1 (ENSSHBG00005013775) #33	MYCT1 (ENSSHBG00005012266) #34	VIP (ENSSHBG00005012244) #35	FBXO5 (ENSSHBG00005012219) #36	MTRF1L (ENSSHBG00005012193) #37	RGS17 (ENSSHBG00005012171)	OPRM1 (ENSSHBG00005012145)
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00960000189587	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236
Great tit	MODERN SPECIES	22	PNLDC1 (ENSPMJG00000009374)	MRPL18 (ENSPMJG00000009371)	TCP1 (ENSPMJG00000009367)	ACAT2 (ENSPMJG00000009365)	WTAP (ENSPMJG00000009363)	SOD2 (ENSPMJG00000009361)	ENSPMJG00000009355	GINM1 (ENSPMJG00000009292) #8	KATNA1 (ENSPMJG00000009228) #9	LATS1 (ENSPMJG00000009227) #10	NUP43 (ENSPMJG00000009226) #11	PCMT1 (ENSPMJG00000009224) #12	LRP11 (ENSPMJG00000009223) #13	PPP1R14C (ENSPMJG00000009207) #20	IYD (ENSPMJG00000009205) #21	PLEKHG1 (ENSPMJG00000009185) #22	MTHFD1L (ENSPMJG00000009104) #24	AKAP12 (ENSPMJG00000009097) #27	ZBTB2 (ENSPMJG00000009064) #28	RMND1 (ENSPMJG00000009063) #29	ARMT1 (ENSPMJG00000009061) #30	CCDC170 (ENSPMJG00000009058) #31	ESR1 (ENSPMJG00000009054) #32	ENSPMJG00000009003 #33	ENSPMJG00000008965 #33	MYCT1 (ENSPMJG00000008961) #34	VIP (ENSPMJG00000008960) #35	FBXO5 (ENSPMJG00000008955) #36	MTRF1L (ENSPMJG00000008953) #37	RGS17 (ENSPMJG00000008950)	OPRM1 (ENSPMJG00000008946)
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00960000189587	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236
Passeriformes_g	ANCESTRAL SPECIES	1	ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00960000189587	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236
Medium ground finch	MODERN SPECIES	95	PNLDC1 (ENSGFOG00000005813)	MRPL18 (ENSGFOG00000005807)	TCP1 (ENSGFOG00000005797)	ENSGFOG00000005792	ENSGFOG00000005781	WTAP (ENSGFOG00000005775)	SOD2 (ENSGFOG00000005682)	ENSGFOG00000005628	GINM1 (ENSGFOG00000005603) #8	KATNA1 (ENSGFOG00000005594) #9	LATS1 (ENSGFOG00000005589) #10	NUP43 (ENSGFOG00000005569) #11	PCMT1 (ENSGFOG00000005555) #12	LRP11 (ENSGFOG00000005546) #13	IYD (ENSGFOG00000005534) #21	PLEKHG1 (ENSGFOG00000005518) #22	MTHFD1L (ENSGFOG00000001800) #24	AKAP12 (ENSGFOG00000001527) #27	ZBTB2 (ENSGFOG00000001524) #28	RMND1 (ENSGFOG00000001514) #29	ARMT1 (ENSGFOG00000001503) #30	ENSGFOG00000001500 #31
Passeroidea	ANCESTRAL SPECIES		ENSGT00940000153167.A.a	ENSGT00390000006394	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00960000189587	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236
Zebra finch	MODERN SPECIES	23	PNLDC1 (ENSTGUG00000011418)	MRPL18 (ENSTGUG00000011414)	TCP1 (ENSTGUG00000011409)	ACAT2 (ENSTGUG00000011404)	WTAP (ENSTGUG00000011389)	SOD2 (ENSTGUG00000024079)	ENSTGUG00000011376	GINM1 (ENSTGUG00000011370) #8	KATNA1 (ENSTGUG00000011351) #9	LATS1 (ENSTGUG00000011347) #10	NUP43 (ENSTGUG00000011345) #11	PCMT1 (ENSTGUG00000011332) #12	LRP11 (ENSTGUG00000011328) #13	PPP1R14C (ENSTGUG00000020746) #20	IYD (ENSTGUG00000011323) #21	PLEKHG1 (ENSTGUG00000011318) #22	MTHFD1L (ENSTGUG00000011286) #24	AKAP12 (ENSTGUG00000029620) #27	ZBTB2 (ENSTGUG00000020410) #28	RMND1 (ENSTGUG00000011268) #29	ARMT1 (ENSTGUG00000011263) #30	CCDC170 (ENSTGUG00000011261) #31	ESR1 (ENSTGUG00000011249) #32	ENSTGUG00000011195 #33	ENSTGUG00000024686	ENSTGUG00000019412 #33	MYCT1 (ENSTGUG00000011193) #34	VIP (ENSTGUG00000020465) #35	MTRF1L (ENSTGUG00000011186) #37	RGS17 (ENSTGUG00000011185)	OPRM1 (ENSTGUG00000011179)
Common canary	MODERN SPECIES	31	PNLDC1 (ENSSCAG00000011248)	MRPL18 (ENSSCAG00000011255)	TCP1 (ENSSCAG00000011263)	ACAT2 (ENSSCAG00000011272)	WTAP (ENSSCAG00000011282)	SOD2 (ENSSCAG00000011298)	FNDC1 (ENSSCAG00000011311)	GINM1 (ENSSCAG00000011323) #8	KATNA1 (ENSSCAG00000011333) #9	LATS1 (ENSSCAG00000011352) #10	NUP43 (ENSSCAG00000011370) #11	PCMT1 (ENSSCAG00000011396) #12	LRP11 (ENSSCAG00000011398) #13	PPP1R14C (ENSSCAG00000011401) #20	IYD (ENSSCAG00000011402) #21	PLEKHG1 (ENSSCAG00000011409) #22	MTHFD1L (ENSSCAG00000011453) #24	AKAP12 (ENSSCAG00000011615) #27	ZBTB2 (ENSSCAG00000011626) #28	RMND1 (ENSSCAG00000011631) #29	ENSSCAG00000011637	ARMT1 (ENSSCAG00000011639) #30	CCDC170 (ENSSCAG00000011646) #31	ESR1 (ENSSCAG00000011670) #32	SYNE1 (ENSSCAG00000012054) #33	MYCT1 (ENSSCAG00000013731) #34	VIP (ENSSCAG00000013737) #35	FBXO5 (ENSSCAG00000013747) #36	MTRF1L (ENSSCAG00000013752) #37	RGS17 (ENSSCAG00000013756)	OPRM1 (ENSSCAG00000013760)
Flycatcher	MODERN SPECIES	21	PNLDC1 (ENSFALG00000012081)	MRPL18 (ENSFALG00000012086)	TCP1 (ENSFALG00000012096)	ACAT2 (ENSFALG00000012103)	ENSFALG00000012108	ENSFALG00000026104	ENSFALG00000012125	GINM1 (ENSFALG00000012135) #8	KATNA1 (ENSFALG00000012149) #9	LATS1 (ENSFALG00000012161) #10	NUP43 (ENSFALG00000012166) #11	PCMT1 (ENSFALG00000026300) #12	LRP11 (ENSFALG00000023095) #13	ENSFALG00000023388	IYD (ENSFALG00000012182) #21	PLEKHG1 (ENSFALG00000012185) #22	MTHFD1L (ENSFALG00000012200) #24	AKAP12 (ENSFALG00000012244) #27	ZBTB2 (ENSFALG00000027296) #28	RMND1 (ENSFALG00000012263) #29	ARMT1 (ENSFALG00000023321) #30	CCDC170 (ENSFALG00000012277) #31	ESR1 (ENSFALG00000012305) #32	SYNE1 (ENSFALG00000012360) #33	MYCT1 (ENSFALG00000015346) #34	VIP (ENSFALG00000024261) #35	FBXO5 (ENSFALG00000012397) #36	MTRF1L (ENSFALG00000012403) #37	RGS17 (ENSFALG00000012407)	OPRM1 (ENSFALG00000012411)	IPCEF1 (ENSFALG00000026673)
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000163429.A
Anatidae	ANCESTRAL SPECIES		ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000163429.A
Duck	DUPLICATION
Duck	MODERN SPECIES	21	ENSAPLG00000022887	SASH1 (ENSAPLG00000007750)	UST (ENSAPLG00000008044)	TAB2 (ENSAPLG00000008173)	ZC3H12D (ENSAPLG00000008379)	PPIL4 (ENSAPLG00000008437) #7	GINM1 (ENSAPLG00000008777) #8	KATNA1 (ENSAPLG00000008891) #9	LATS1 (ENSAPLG00000009385) #10	NUP43 (ENSAPLG00000028569) #11	PCMT1 (ENSAPLG00000009762) #12	LRP11 (ENSAPLG00000009937) #13	PPP1R14C (ENSAPLG00000009955) #20	IYD (ENSAPLG00000009957) #21	ENSAPLG00000029816 #22	ENSAPLG00000010066 #22	MTHFD1L (ENSAPLG00000010485) #24	AKAP12 (ENSAPLG00000020224) #27	ZBTB2 (ENSAPLG00000011819) #28	RMND1 (ENSAPLG00000011834) #29	ARMT1 (ENSAPLG00000011927) #30	CCDC170 (ENSAPLG00000011938) #31	ESR1 (ENSAPLG00000004585) #32	ENSAPLG00000017771 #33	ENSAPLG00000019803 #33	ENSAPLG00000027425	ENSAPLG00000020483	ENSAPLG00000017874	ENSAPLG00000029426	ENSAPLG00000006495 #33	MYCT1 (ENSAPLG00000020316) #34
Duck	MODERN SPECIES	21	SAMD5 (ENSAPLG00000016694)	ENSAPLG00000022887	SASH1 (ENSAPLG00000007750)	UST (ENSAPLG00000008044)	TAB2 (ENSAPLG00000008173)	ZC3H12D (ENSAPLG00000008379)	PPIL4 (ENSAPLG00000008437) #7	GINM1 (ENSAPLG00000008777) #8	KATNA1 (ENSAPLG00000008891) #9	LATS1 (ENSAPLG00000009385) #10	NUP43 (ENSAPLG00000028569) #11	PCMT1 (ENSAPLG00000009762) #12	LRP11 (ENSAPLG00000009937) #13	PPP1R14C (ENSAPLG00000009955) #20	IYD (ENSAPLG00000009957) #21	ENSAPLG00000029816 #22	ENSAPLG00000010066 #22	MTHFD1L (ENSAPLG00000010485) #24	AKAP12 (ENSAPLG00000020224) #27	ZBTB2 (ENSAPLG00000011819) #28	RMND1 (ENSAPLG00000011834) #29	ARMT1 (ENSAPLG00000011927) #30	CCDC170 (ENSAPLG00000011938) #31	ESR1 (ENSAPLG00000004585) #32	ENSAPLG00000017771 #33	ENSAPLG00000019803 #33	ENSAPLG00000027425	ENSAPLG00000020483	ENSAPLG00000017874	ENSAPLG00000029426	ENSAPLG00000006495 #33
Pink-footed goose	MODERN SPECIES	2	ADGB (ENSABRG00000009564)	STXBP5 (ENSABRG00000009475)	SAMD5 (ENSABRG00000009448)	SASH1 (ENSABRG00000009323)	UST (ENSABRG00000009254)	TAB2 (ENSABRG00000009224)	ZC3H12D (ENSABRG00000009215)	PPIL4 (ENSABRG00000009200) #7	GINM1 (ENSABRG00000009189) #8	LATS1 (ENSABRG00000009169) #10	NUP43 (ENSABRG00000009140) #11	PCMT1 (ENSABRG00000009117) #12	LRP11 (ENSABRG00000009107) #13	PPP1R14C (ENSABRG00000009084) #20	IYD (ENSABRG00000009070) #21	PLEKHG1 (ENSABRG00000008984) #22	MTHFD1L (ENSABRG00000008938) #24	AKAP12 (ENSABRG00000008911) #27	ZBTB2 (ENSABRG00000008902) #28	RMND1 (ENSABRG00000008884) #29	ARMT1 (ENSABRG00000008870) #30	CCDC170 (ENSABRG00000008853) #31	ESR1 (ENSABRG00000008623) #32	SYNE1 (ENSABRG00000005369) #33	MYCT1 (ENSABRG00000005084) #34	VIP (ENSABRG00000005071) #35	FBXO5 (ENSABRG00000005041) #36	MTRF1L (ENSABRG00000005018) #37	RGS17 (ENSABRG00000005008)	OPRM1 (ENSABRG00000004981)	ENSABRG00000004958
Phasianidae	DUPLICATION
Phasianidae	ANCESTRAL SPECIES	3	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723.y #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000163429.A
Phasianidae_b	ANCESTRAL SPECIES	2	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723.y #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000163429.A
Chicken	MODERN SPECIES	22	STXBP5 (ENSGALG00010005411)	SASH1 (ENSGALG00010005442)	UST (ENSGALG00010005453)	TAB2 (ENSGALG00010006524)	ZC3H12D (ENSGALG00010005459)	PPIL4 (ENSGALG00010005468) #7	ENSGALG00010005471	GINM1 (ENSGALG00010005484) #8	KATNA1 (ENSGALG00010005500) #9	LATS1 (ENSGALG00010005504) #10	NUP43 (ENSGALG00010005527) #11	PCMT1 (ENSGALG00010005540) #12	LRP11 (ENSGALG00010005547) #13	PPP1R14C (ENSGALG00010005553) #20	IYD (ENSGALG00010005556) #21	PLEKHG1 (ENSGALG00010005568) #22	MTHFD1L (ENSGALG00010005610) #24	AKAP12 (ENSGALG00010005704) #27	ZBTB2 (ENSGALG00010005716) #28	RMND1 (ENSGALG00010005752) #29	ARMT1 (ENSGALG00010005779) #30	CCDC170 (ENSGALG00010005141) #31	ESR1 (ENSGALG00010005186) #32	ENSGALG00010005203 #33	ENSGALG00010005213 #33	ENSGALG00010005216	ENSGALG00010007190 ##33	ENSGALG00010005224 ##33	ENSGALG00010007201 #33	MYCT1 (ENSGALG00010005226) #34	VIP (ENSGALG00010005240) #35
Turkey	MODERN SPECIES	11	STXBP5 (ENSMGAG00000012565)	SAMD5 (ENSMGAG00000022046)	SASH1 (ENSMGAG00000012577)	UST (ENSMGAG00000012589)	TAB2 (ENSMGAG00000012593)	ZC3H12D (ENSMGAG00000012594)	PPIL4 (ENSMGAG00000012596) #7	GINM1 (ENSMGAG00000012604) #8	KATNA1 (ENSMGAG00000012608) #9	LATS1 (ENSMGAG00000012618) #10	NUP43 (ENSMGAG00000012626) #11	PCMT1 (ENSMGAG00000012636) #12	PPP1R14C (ENSMGAG00000012643) #20	IYD (ENSMGAG00000012644) #21	ENSMGAG00000021541 #22	ENSMGAG00000012651 #22	MTHFD1L (ENSMGAG00000012662) #24	AKAP12 (ENSMGAG00000012673) #27	ZBTB2 (ENSMGAG00000021738) #28	RMND1 (ENSMGAG00000012680) #29	ARMT1 (ENSMGAG00000012685) #30	CCDC170 (ENSMGAG00000012688) #31	ESR1 (ENSMGAG00000012692) #32	SYNE1 (ENSMGAG00000012698) #33	MYCT1 (ENSMGAG00000015856) #34	VIP (ENSMGAG00000012740) #35	MTRF1L (ENSMGAG00000012738) #37	RGS17 (ENSMGAG00000012749)	OPRM1 (ENSMGAG00000012751)	ENSMGAG00000012753	ENSMGAG00000012756
Japanese quail	MODERN SPECIES	21	SAMD5 (ENSCJPG00005005947)	SASH1 (ENSCJPG00005005963)	UST (ENSCJPG00005006187)	TAB2 (ENSCJPG00005006196)	ZC3H12D (ENSCJPG00005006197)	PPIL4 (ENSCJPG00005006198) #7	GINM1 (ENSCJPG00005006199) #8	KATNA1 (ENSCJPG00005006212) #9	LATS1 (ENSCJPG00005006283) #10	ENSCJPG00005006284	NUP43 (ENSCJPG00005006287) #11	PCMT1 (ENSCJPG00005006305) #12	LRP11 (ENSCJPG00005006308) #13	PPP1R14C (ENSCJPG00005006377) #20	IYD (ENSCJPG00005006409) #21	PLEKHG1 (ENSCJPG00005006423) #22	MTHFD1L (ENSCJPG00005006446) #24	AKAP12 (ENSCJPG00005007509) #27	ZBTB2 (ENSCJPG00005007510) #28	RMND1 (ENSCJPG00005007512) #29	CCDC170 (ENSCJPG00005007525) #31	ESR1 (ENSCJPG00005007531) #32	ENSCJPG00005007549 #33	ENSCJPG00005007605 #33	MYCT1 (ENSCJPG00005007730) #34	VIP (ENSCJPG00005007731) #35	FBXO5 (ENSCJPG00005007733) #36	MTRF1L (ENSCJPG00005007734) #37	RGS17 (ENSCJPG00005007740)	OPRM1 (ENSCJPG00005007753)	ENSCJPG00005007757
Phasianidae	ANCESTRAL SPECIES																	ENSGT00940000157723.z #22
Phasianidae_b	ANCESTRAL SPECIES																	ENSGT00940000157723.z #22
Turkey	MODERN SPECIES	11	ADGB (ENSMGAG00000012559)	STXBP5 (ENSMGAG00000012565)	SAMD5 (ENSMGAG00000022046)	SASH1 (ENSMGAG00000012577)	UST (ENSMGAG00000012589)	TAB2 (ENSMGAG00000012593)	ZC3H12D (ENSMGAG00000012594)	PPIL4 (ENSMGAG00000012596) #7	GINM1 (ENSMGAG00000012604) #8	KATNA1 (ENSMGAG00000012608) #9	LATS1 (ENSMGAG00000012618) #10	NUP43 (ENSMGAG00000012626) #11	PCMT1 (ENSMGAG00000012636) #12	PPP1R14C (ENSMGAG00000012643) #20	IYD (ENSMGAG00000012644) #21	ENSMGAG00000021541 #22	ENSMGAG00000012651 #22	MTHFD1L (ENSMGAG00000012662) #24	AKAP12 (ENSMGAG00000012673) #27	ZBTB2 (ENSMGAG00000021738) #28	RMND1 (ENSMGAG00000012680) #29	ARMT1 (ENSMGAG00000012685) #30	CCDC170 (ENSMGAG00000012688) #31	ESR1 (ENSMGAG00000012692) #32	SYNE1 (ENSMGAG00000012698) #33	MYCT1 (ENSMGAG00000015856) #34	VIP (ENSMGAG00000012740) #35	MTRF1L (ENSMGAG00000012738) #37	RGS17 (ENSMGAG00000012749)	OPRM1 (ENSMGAG00000012751)	ENSMGAG00000012753
African ostrich	MODERN SPECIES	394																PLEKHG1 (ENSSCUG00000006059) #22	MTHFD1L (ENSSCUG00000005958) #24	AKAP12 (ENSSCUG00000005911) #27	ZBTB2 (ENSSCUG00000005909) #28	RMND1 (ENSSCUG00000005908) #29	ENSSCUG00000005907 #30	ENSSCUG00000005906 #30	CCDC170 (ENSSCUG00000005904) #31	ESR1 (ENSSCUG00000005902) #32	ENSSCUG00000005898 #33	ENSSCUG00000005891 #33	MYCT1 (ENSSCUG00000005889) #34	VIP (ENSSCUG00000005887) #35	FBXO5 (ENSSCUG00000005886) #36	MTRF1L (ENSSCUG00000005885) #37	RGS17 (ENSSCUG00000005882)
Australian saltwater crocodile	MODERN SPECIES	60	STXBP5 (ENSCPRG00005000169)	SAMD5 (ENSCPRG00005018259)	SASH1 (ENSCPRG00005018257)	UST (ENSCPRG00005018253)	TAB2 (ENSCPRG00005018252)	ENSCPRG00005018250	PPIL4 (ENSCPRG00005018248) #7	GINM1 (ENSCPRG00005018246) #8	KATNA1 (ENSCPRG00005018245) #9	LATS1 (ENSCPRG00005018242) #10	NUP43 (ENSCPRG00005018240) #11	PCMT1 (ENSCPRG00005018239) #12	LRP11 (ENSCPRG00005018237) #13	PPP1R14C (ENSCPRG00005018235) #20	IYD (ENSCPRG00005018228) #21	PLEKHG1 (ENSCPRG00005018218) #22	MTHFD1L (ENSCPRG00005018210) #24	AKAP12 (ENSCPRG00005018202) #27	ZBTB2 (ENSCPRG00005018192) #28	RMND1 (ENSCPRG00005018189) #29	ARMT1 (ENSCPRG00005018186) #30	CCDC170 (ENSCPRG00005018179) #31	ESR1 (ENSCPRG00005018167) #32	ENSCPRG00005018146 #33	ENSCPRG00005018130 #33	MYCT1 (ENSCPRG00005018122) #34	VIP (ENSCPRG00005018118) #35	FBXO5 (ENSCPRG00005018113) #36	MTRF1L (ENSCPRG00005018112) #37	RGS17 (ENSCPRG00005018111)	OPRM1 (ENSCPRG00005018110)
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00960000189587	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133 #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236
Testudinoidea	ANCESTRAL SPECIES		ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388.b	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00960000189587	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133.g #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236
Emydidae	ANCESTRAL SPECIES		ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388.b	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133.g #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d	ENSGT00940000158236	ENSGT00940000163429.A
painted turtle	MODERN SPECIES	12	SAMD5 (ENSCPBG00000016647)	SASH1 (ENSCPBG00000016639)	UST (ENSCPBG00000016632)	TAB2 (ENSCPBG00000016627)	ENSCPBG00000016622	ENSCPBG00000016618	PPIL4 (ENSCPBG00000016612) #7	GINM1 (ENSCPBG00000016606) #8	KATNA1 (ENSCPBG00000016599) #9	LATS1 (ENSCPBG00000016594) #10	NUP43 (ENSCPBG00000016592) #11	PCMT1 (ENSCPBG00000016587) #12	LRP11 (ENSCPBG00000016581) #13	PPP1R14C (ENSCPBG00000016573) #20	IYD (ENSCPBG00000016570) #21	PLEKHG1 (ENSCPBG00000016555) #22	MTHFD1L (ENSCPBG00000016546) #24	AKAP12 (ENSCPBG00000016538) #27	ZBTB2 (ENSCPBG00000016532) #28	RMND1 (ENSCPBG00000016524) #29	ARMT1 (ENSCPBG00000016517) #30	CCDC170 (ENSCPBG00000016507) #31	ESR1 (ENSCPBG00000016495) #32	ENSCPBG00000016476 #33	ENSCPBG00000016384 #33	MYCT1 (ENSCPBG00000016354) #34	VIP (ENSCPBG00000016353) #35	FBXO5 (ENSCPBG00000016351) #36	MTRF1L (ENSCPBG00000016349) #37	RGS17 (ENSCPBG00000016347)	OPRM1 (ENSCPBG00000016340)
Three-toed box turtle	MODERN SPECIES	31	STXBP5 (ENSTMTG00000004778)	SAMD5 (ENSTMTG00000004731)	SASH1 (ENSTMTG00000004406)	UST (ENSTMTG00000004349)	TAB2 (ENSTMTG00000004322)	ENSTMTG00000004314	PPIL4 (ENSTMTG00000004303) #7	GINM1 (ENSTMTG00000004295) #8	KATNA1 (ENSTMTG00000004230) #9	LATS1 (ENSTMTG00000004215) #10	NUP43 (ENSTMTG00000004187) #11	PCMT1 (ENSTMTG00000004171) #12	LRP11 (ENSTMTG00000004151) #13	PPP1R14C (ENSTMTG00000004130) #20	IYD (ENSTMTG00000004119) #21	ENSTMTG00000004099 #22	MTHFD1L (ENSTMTG00000002772) #24	AKAP12 (ENSTMTG00000002678) #27	ZBTB2 (ENSTMTG00000002675) #28	RMND1 (ENSTMTG00000002671) #29	ARMT1 (ENSTMTG00000002665) #30	CCDC170 (ENSTMTG00000002659) #31	ESR1 (ENSTMTG00000002657) #32	ENSTMTG00000002405 #33	ENSTMTG00000002347	ENSTMTG00000002339	ENSTMTG00000002319 #33	MYCT1 (ENSTMTG00000002308) #34	VIP (ENSTMTG00000002297) #35	FBXO5 (ENSTMTG00000002290) #36	MTRF1L (ENSTMTG00000002218) #37
Testudinidae	ANCESTRAL SPECIES	4	ENSGT00390000014904	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388.b	ENSGT00940000156283 #7	ENSGT00390000008373 #8	ENSGT00940000156638 #9	ENSGT00940000157684 #10	ENSGT00390000004803 #11	ENSGT00950000183032.B.b.b #12	ENSGT00940000161275 #13	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT00940000158401 #28	ENSGT00390000013337 #29	ENSGT00960000189587	ENSGT00530000064023 #30	ENSGT00390000012924.a #31	ENSGT00940000158133.g #32	ENSGT00940000158133.h #32	ENSGT00940000154481.a.b #33	ENSGT00390000011642 #34	ENSGT00950000183154.a #35	ENSGT00530000063692.b #36	ENSGT00940000155683 #37	ENSGT00940000155393.d
Abingdon island giant tortoise	MODERN SPECIES	869										ENSCABG00000011732	ENSCABG00000011736	B4GALT4 (ENSCABG00000011740)	TMEM39A (ENSCABG00000011742)	ENSCABG00000011746	CHD1L (ENSCABG00000011754)	ENSCABG00000011820 #22	MTHFD1L (ENSCABG00000011822) #24	AKAP12 (ENSCABG00000012018) #27	ZBTB2 (ENSCABG00000012021) #28	ENSCABG00000012023 #29	ENSCABG00000012024	ARMT1 (ENSCABG00000012025) #30	CCDC170 (ENSCABG00000012027) #31	SULF1 (ENSCABG00000012028)
Goode s thornscrub tortoise	MODERN SPECIES	17	ENSGEVG00005011181	SAMD5 (ENSGEVG00005011221)	UST (ENSGEVG00005011749)	TAB2 (ENSGEVG00005011836)	ZC3H12D (ENSGEVG00005011865)	PPIL4 (ENSGEVG00005011896) #7	GINM1 (ENSGEVG00005011965) #8	KATNA1 (ENSGEVG00005011989) #9	LATS1 (ENSGEVG00005012016) #10	ENSGEVG00005012043 #11	ENSGEVG00005012087 #11	PCMT1 (ENSGEVG00005012105) #12	LRP11 (ENSGEVG00005012143) #13	PPP1R14C (ENSGEVG00005012375) #20	IYD (ENSGEVG00005012422) #21	ENSGEVG00005012469 #22	MTHFD1L (ENSGEVG00005012612) #24	AKAP12 (ENSGEVG00005012759) #27	ZBTB2 (ENSGEVG00005012892) #28	RMND1 (ENSGEVG00005012911) #29	ARMT1 (ENSGEVG00005012940) #30	CCDC170 (ENSGEVG00005012970) #31	ESR1 (ENSGEVG00005013158) #32	SYNE1 (ENSGEVG00005015272) #33	MYCT1 (ENSGEVG00005020222) #34	VIP (ENSGEVG00005020226) #35	FBXO5 (ENSGEVG00005020230) #36	MTRF1L (ENSGEVG00005020238) #37	RGS17 (ENSGEVG00005020253)	ENSGEVG00005020259	ENSGEVG00005020261
Chinese turtle	MODERN SPECIES	461	SASH1 (ENSPSIG00000014898)	UST (ENSPSIG00000015610)	ENSPSIG00000015911	TAB2 (ENSPSIG00000016192)	ZC3H12D (ENSPSIG00000016475)	PPIL4 (ENSPSIG00000016651) #7	GINM1 (ENSPSIG00000016675) #8	KATNA1 (ENSPSIG00000017091) #9	LATS1 (ENSPSIG00000017097) #10	NUP43 (ENSPSIG00000017199) #11	PCMT1 (ENSPSIG00000017327) #12	ENSPSIG00000017362	PPP1R14C (ENSPSIG00000017492) #20	IYD (ENSPSIG00000017499) #21	ENSPSIG00000017546	PLEKHG1 (ENSPSIG00000017610) #22	MTHFD1L (ENSPSIG00000018016) #24	AKAP12 (ENSPSIG00000018242) #27	ZBTB2 (ENSPSIG00000018246) #28	RMND1 (ENSPSIG00000018248) #29	ARMT1 (ENSPSIG00000004092) #30	CCDC170 (ENSPSIG00000004116) #31	ESR1 (ENSPSIG00000004166) #32	ENSPSIG00000004530 #33	ENSPSIG00000004795	ENSPSIG00000004808 #33	ENSPSIG00000004853 #33	MYCT1 (ENSPSIG00000004949) #34	VIP (ENSPSIG00000004987) #35	ENSPSIG00000000120	FBXO5 (ENSPSIG00000005294) #36
Anura	ANCESTRAL SPECIES	237															ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00940000157477 #24	ENSGT00730000111244 #27	ENSGT01100000263524.G	ENSGT00940000159330	ENSGT00940000153370.a.b	ENSGT00390000002675	ENSGT00940000158461	ENSGT00390000018361	ENSGT01050000244948.c.b	ENSGT00940000153467.a.a	ENSGT00390000010101
Frog	MODERN SPECIES	5	vta1 (ENSXETG00000021109)	adgrg6 (ENSXETG00000030163)	gje1 (ENSXETG00000049272)	slc22a2 (ENSXETG00000033727)	igf2r (ENSXETG00000021138)	tcp1 (ENSXETG00000038604)	acat2 (ENSXETG00000021174)	wtap (ENSXETG00000021175)	sod2 (ENSXETG00000021180)	fndc1 (ENSXETG00000035120)	spast (ENSXETG00000011392)	ttll2 (ENSXETG00000027373)	desi2 (ENSXETG00000045919)	hnrnpu (ENSXETG00000011386)	iyd (ENSXETG00000011383) #21	plekhg1 (ENSXETG00000007619) #22	mthfd1l (ENSXETG00000013956) #24	akap12 (ENSXETG00000037915) #27	opn6a (ENSXETG00000022282)	vit (ENSXETG00000022285)	fam89a (ENSXETG00000039518)	arv1 (ENSXETG00000026359)	ttc13 (ENSXETG00000022287)	c1orf198 (ENSXETG00000049317)	ENSXETG00000048087	stx11 (ENSXETG00000041475)	utrn (ENSXETG00000022290)	ENSXETG00000048985	epm2a (ENSXETG00000017691)	birc6 (ENSXETG00000017697)	ENSXETG00000043085
Leishan spiny toad	MODERN SPECIES	7	CGA (ENSLLEG00000026652)	ZNF292 (ENSLLEG00000026699)	ENSLLEG00000026767	GJB7 (ENSLLEG00000026785)	ENSLLEG00000026839	SMIM8 (ENSLLEG00000026892)	ENSLLEG00000026952	SLC35A1 (ENSLLEG00000027268)	RARS2 (ENSLLEG00000027332)	ORC3 (ENSLLEG00000027459)	AKIRIN2 (ENSLLEG00000028141)	PNISR (ENSLLEG00000028196)	ENSLLEG00000028268	COQ3 (ENSLLEG00000028305)	IYD (ENSLLEG00000028358) #21	PLEKHG1 (ENSLLEG00000028393) #22	ENSLLEG00000028603	ENSLLEG00000028619	MTHFD1L (ENSLLEG00000028652) #24	ENSLLEG00000028923	AKAP12 (ENSLLEG00000028941) #27	ENSLLEG00000028958	ENSLLEG00000028966	ENSLLEG00000028977	VIT (ENSLLEG00000029010)	FAM89A (ENSLLEG00000029141)	ARV1 (ENSLLEG00000029159)	TTC13 (ENSLLEG00000029203)	C1orf198 (ENSLLEG00000029424)	ENSLLEG00000029446	STX11 (ENSLLEG00000029458)
Coelacanth	MODERN SPECIES	2529																PLEKHG1 (ENSLACG00000001432) #22	ENSLACG00000004246 #24	ENSLACG00000005876 #24
Actinopterygii	ANCESTRAL SPECIES	69	ENSGT00940000155712	ENSGT00940000159614	ENSGT00940000155726	ENSGT00940000156799	ENSGT00940000156274	ENSGT00940000156248	ENSGT00940000156509	ENSGT00940000159413	ENSGT00950000183215.c.a.a	ENSGT00940000164948	ENSGT00950000183163.a.b	ENSGT00940000167949	ENSGT00950000182941.a.a.a	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000157993	ENSGT00390000004172	ENSGT01090000260082.d.b	ENSGT00940000160610	ENSGT00940000167198	ENSGT00940000156034.a
Reedfish	MODERN SPECIES	6	ECT2L (ENSECRG00000012867)	ccdc28a (ENSECRG00000012795)	NHSL1 (ENSECRG00000012718)	aldh8a1 (ENSECRG00000012650)	hbs1l (ENSECRG00000012621)	myb (ENSECRG00000012557)	ahi1 (ENSECRG00000012493)	PDE7B (ENSECRG00000012364)	mtfr2 (ENSECRG00000012286)	armc1l (ENSECRG00000012261)	BCLAF1 (ENSECRG00000012238)	ENSECRG00000012212	MAP7 (ENSECRG00000012118)	ppp1r14c (ENSECRG00000012056) #20	iyd (ENSECRG00000012047) #21	PLEKHG1 (ENSECRG00000012027) #22	tcp1 (ENSECRG00000011980)	acat2 (ENSECRG00000011958)	wtap (ENSECRG00000011932)	sod2 (ENSECRG00000011913)	tagapb (ENSECRG00000011888)	rsph3 (ENSECRG00000011873)	ezra (ENSECRG00000011838)	ENSECRG00000011818	ENSECRG00000011803	enpp1 (ENSECRG00000011769)	hao1 (ENSECRG00000011686)	PLCB1 (ENSECRG00000011416)	PLCB4 (ENSECRG00000017132)	ENSECRG00000017078	LAMP5 (ENSECRG00000017058)
Neopterygii	ANCESTRAL SPECIES	88	ENSGT00940000155712	ENSGT00940000159614	ENSGT00940000155726	ENSGT00940000156799	ENSGT00940000156274	ENSGT00940000156248	ENSGT00940000156509	ENSGT00940000159413	ENSGT00950000183215.c.a.a	ENSGT00940000164948	ENSGT00950000183163.a.b	ENSGT00940000167949	ENSGT00950000182941.a.a.a	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.A
Spotted gar	MODERN SPECIES	647	slc2a12 (ENSLOCG00000016228)	ENSLOCG00000016227	SGK1 (ENSLOCG00000016226)	aldh8a1 (ENSLOCG00000016225)	hbs1l (ENSLOCG00000016221)	myb (ENSLOCG00000016218)	ahi1 (ENSLOCG00000016215)	PDE7B (ENSLOCG00000016213)	mtfr2 (ENSLOCG00000016211)	armc1l (ENSLOCG00000016210)	BCLAF1 (ENSLOCG00000016208)	ENSLOCG00000016206	MAP7 (ENSLOCG00000016205)	ppp1r14c (ENSLOCG00000016203) #20	iyd (ENSLOCG00000016202) #21	PLEKHG1 (ENSLOCG00000016199) #22	tcp1 (ENSLOCG00000016197)	acat2 (ENSLOCG00000016193)	wtap (ENSLOCG00000016191)	sod2 (ENSLOCG00000016188)	FNDC1 (ENSLOCG00000016185)	OTOF (ENSLOCG00000016183)	drc1 (ENSLOCG00000016179)	selenoi (ENSLOCG00000016178)	ost4 (ENSLOCG00000017994)	agbl5 (ENSLOCG00000016175)	UTRN (ENSLOCG00000016162)	ENSLOCG00000016161	EPM2A (ENSLOCG00000016158)	fbxo30a (ENSLOCG00000016157)	ENSLOCG00000016156
Osteoglossocephalai	ANCESTRAL SPECIES	183	ENSGT00950000182978.A.a.a	ENSGT00940000160174	ENSGT00940000155712	ENSGT00940000159614	ENSGT00940000155726	ENSGT00940000156799	ENSGT00940000156274	ENSGT00940000156248	ENSGT00940000159413	ENSGT00950000183215.c.a.a	ENSGT00940000164948	ENSGT00950000183163.a.b	ENSGT00950000182941.a.a.a.a	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B
Osteoglossiformes	ANCESTRAL SPECIES	16	ENSGT00940000155712	ENSGT00940000159614	ENSGT00940000164496.b	ENSGT00940000156399.vb	ENSGT00940000155726	ENSGT00940000156799	ENSGT00940000156274	ENSGT00940000156248.oc.b	ENSGT00940000159413	ENSGT00950000183215.c.a.a	ENSGT00940000164948	ENSGT00950000183163.a.b	ENSGT00950000182941.a.a.a.a	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.A.h	ENSGT00940000153804.A
P. kingsleyae	MODERN SPECIES	82	matn3a (ENSPKIG00000023389)	laptm4a (ENSPKIG00000023354)	SGK1 (ENSPKIG00000023267)	ENSPKIG00000023230	aldh8a1 (ENSPKIG00000023217)	hbs1l (ENSPKIG00000023171)	MYB (ENSPKIG00000023135)	PDE7B (ENSPKIG00000023116)	mtfr2 (ENSPKIG00000023105)	armc1l (ENSPKIG00000023085)	ENSPKIG00000023071	BCLAF1 (ENSPKIG00000023059)	MAP7 (ENSPKIG00000022970)	ppp1r14c (ENSPKIG00000022914) #20	iyd (ENSPKIG00000022903) #21	PLEKHG1 (ENSPKIG00000022866) #22	tcp1 (ENSPKIG00000022823)	acat2 (ENSPKIG00000022793)	wtap (ENSPKIG00000022767)	wtap (ENSPKIG00000022748)	sod2 (ENSPKIG00000022722)	FNDC1 (ENSPKIG00000022686)	OTOF (ENSPKIG00000022619)	fzd3a (ENSPKIG00000022575)	ENSPKIG00000022561	cdc42bpab (ENSPKIG00000022461)	lft1 (ENSPKIG00000022403)	ENSPKIG00000022375	hnrnpub (ENSPKIG00000022332)	KIF26B (ENSPKIG00000022242)	cnstb (ENSPKIG00000022184)
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	6	aspg (ENSSFOG00015015394)	mthfd1b (ENSSFOG00015015515)	ZBTB25 (ENSSFOG00015028717)	zbtb1 (ENSSFOG00015015685)	ENSSFOG00015015695	INAFM2 (ENSSFOG00015015753)	PLCB2 (ENSSFOG00015015768)	ENSSFOG00015019683	myh6 (ENSSFOG00015015818)	ANKRD63 (ENSSFOG00015015973)	PAK6 (ENSSFOG00015015987)	BUB1B (ENSSFOG00015016012)	zfyve19 (ENSSFOG00015016054)	ppp1r14d (ENSSFOG00015016105) ##20	spint1a (ENSSFOG00015029702)	ENSSFOG00015016175 #22	xgb (ENSSFOG00015016240)	srp14 (ENSSFOG00015028535)	PLD4 (ENSSFOG00015016295)	adss1 (ENSSFOG00015016315)	siva1 (ENSSFOG00015016355)	ENSSFOG00015025511	AKT1 (ENSSFOG00015016396)	CEP170B (ENSSFOG00015016436)	dnajc17 (ENSSFOG00015016491)	ENSSFOG00015016523	gchfr (ENSSFOG00015016529)	rmdn3 (ENSSFOG00015016547)	cyp1c2 (ENSSFOG00015016581)	cyp1c2 (ENSSFOG00015016644)	rad51 (ENSSFOG00015016657)
Asian bonytongue	MODERN SPECIES		eya4 (ENSSFOG00015017200)	tcf21 (ENSSFOG00015024810)	tbpl1 (ENSSFOG00015017311)	slc2a12 (ENSSFOG00015017339)	sgk1 (ENSSFOG00015017351)	aldh8a1 (ENSSFOG00015033318)	hbs1l (ENSSFOG00015017544)	MYB (ENSSFOG00015017613)	mtfr2 (ENSSFOG00015017810)	armc1l (ENSSFOG00015017825)	BCLAF1 (ENSSFOG00015017853)	MAP7 (ENSSFOG00015017910)	ENSSFOG00015018022	ppp1r14c (ENSSFOG00015018031) #20	iyd (ENSSFOG00015018043) #21	PLEKHG1 (ENSSFOG00015024237) #22	ENSSFOG00015018085	tcp1 (ENSSFOG00015018108)	acat2 (ENSSFOG00015018150)	wtap (ENSSFOG00015032191)	sod2 (ENSSFOG00015018195)	OTOF (ENSSFOG00015018253)	drc1 (ENSSFOG00015018560)	foxi2 (ENSSFOG00015026749)	zfyve28 (ENSSFOG00015027771)	EIF2AK3 (ENSSFOG00015018609)	SLC4A11 (ENSSFOG00015018690)	ENSSFOG00015018852	dnaaf9 (ENSSFOG00015018879)	ATRN (ENSSFOG00015018905)	gfra4a (ENSSFOG00015018969)
Clupeocephala	ANCESTRAL SPECIES	140	ENSGT00940000160174	ENSGT00940000155712	ENSGT00940000159614	ENSGT00940000155726	ENSGT00940000156799	ENSGT00940000156274	ENSGT01080000257573	ENSGT00650000094590	ENSGT00940000156248	ENSGT00940000159413	ENSGT00950000183215.c.a.a	ENSGT00940000164948	ENSGT00950000182941.a.a.a.a	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000166976	ENSGT00940000155086.B
Otomorpha	DUPLICATION
Otomorpha	DUPLICATION
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000157723.c.a #22
Otophysi	ANCESTRAL SPECIES																	ENSGT00940000157723.c.a #22
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00940000157723.c.a #22
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000157723.c.a #22
Cyprininae_a	ANCESTRAL SPECIES	685										ENSGT00390000005766.b	ENSGT00940000159326.j	ENSGT00940000156528.c.h.b	ENSGT00940000158912.j.b	ENSGT00390000016108.c.b	ENSGT00940000164935.a.a	ENSGT00940000157723.c.a #22
Common carp reference	MODERN SPECIES	30	zgc:136872 (ENSCCRG00000034795)	ENSCCRG00000065639	bdkrb1 (ENSCCRG00000074269)	ENSCCRG00000065008	kcnk10b (ENSCCRG00000013657)	ENSCCRG00000029672	ENSCCRG00000045272	ENSCCRG00000075928	ENSCCRG00000004033 ##20	PLCB2 (ENSCCRG00000020460)	INAFM2 (ENSCCRG00000067731)	PAK6 (ENSCCRG00000063441)	zfyve19 (ENSCCRG00000025202)	ENSCCRG00000058128	spint1a (ENSCCRG00000004037)	ENSCCRG00000072360 #22	srp14 (ENSCCRG00000003720)	ENSCCRG00000003646	ENSCCRG00000003615	ENSCCRG00000060815	siva1 (ENSCCRG00000054271)	adss1 (ENSCCRG00000076330)	ENSCCRG00000005839	INF2 (ENSCCRG00000031408)	dnajc17 (ENSCCRG00000002844)	ENSCCRG00000067730	ENSCCRG00000002815	ENSCCRG00000031417	ENSCCRG00000055422	ENSCCRG00000058394	ENSCCRG00000053792
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000157723.c.b #22
Clupeiformes	ANCESTRAL SPECIES	653																ENSGT00940000157723.c.b #22	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000158752.g.b
Denticle herring	MODERN SPECIES	5	spint1b (ENSDCDG00000016500)	KIF1A (ENSDCDG00000016697)	agxtb (ENSDCDG00000019685)	tmem63a (ENSDCDG00000019828)	prkchb (ENSDCDG00000021886)	hif1ab (ENSDCDG00000021912)	tmem121ab (ENSDCDG00000022232)	SLC24A4 (ENSDCDG00000022244)	cpsf2 (ENSDCDG00000022249)	NDUFB1 (ENSDCDG00000022255)	riox1 (ENSDCDG00000022267)	extl3 (ENSDCDG00000022381)	ints9 (ENSDCDG00000022399)	HMBOX1 (ENSDCDG00000022414)	ENSDCDG00000022416	ENSDCDG00000022419 #22	ENSDCDG00000022423	CEP170B (ENSDCDG00000022426)	AKT1 (ENSDCDG00000022593)	selenot2 (ENSDCDG00000026411)	DLGAP2 (ENSDCDG00000026421)	grcc10 (ENSDCDG00000026467)	ptger2b (ENSDCDG00000026468)	INAFM2 (ENSDCDG00000026470)	zbtb1 (ENSDCDG00000026471)	ENSDCDG00000026472	MTHFD1 (ENSDCDG00000026490)	KIF26A (ENSDCDG00000027192)	tmem179aa (ENSDCDG00000027210)	prph2lb (ENSDCDG00000027212)	serpina10a (ENSDCDG00000027213)
Atlantic herring	MODERN SPECIES	6	efhc1 (ENSCHAG00000025291)	ENSCHAG00000025313	ENSCHAG00000025325	ENSCHAG00000025330	mrpl19 (ENSCHAG00000025333)	itsn2a (ENSCHAG00000025403)	ENSCHAG00000026148	GNPAT (ENSCHAG00000026157)	mxg (ENSCHAG00000026181)	LPIN1 (ENSCHAG00000026202)	si:ch73-21k16.4 (ENSCHAG00000026246)	id2b (ENSCHAG00000026250)	kidins220b (ENSCHAG00000026256)	spint1b (ENSCHAG00000026334)	rbp2a (ENSCHAG00000026337)	ENSCHAG00000026342 #22	ENSCHAG00000026351	CEP170B (ENSCHAG00000026354)	AKT1 (ENSCHAG00000026369)	HMBOX1 (ENSCHAG00000026418)	ints9 (ENSCHAG00000026434)	extl3 (ENSCHAG00000002367)	riox1 (ENSCHAG00000002553)	NDUFB1 (ENSCHAG00000003539)	cpsf2 (ENSCHAG00000003572)	ENSCHAG00000004655	SLC24A4 (ENSCHAG00000004667)	tmem121ab (ENSCHAG00000004684)	FUT8 (ENSCHAG00000004716)	gphnb (ENSCHAG00000005071)	atp6v1d (ENSCHAG00000011859)
Otophysi	ANCESTRAL SPECIES																	ENSGT00940000157723.c.b #22
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00940000157723.c.b #22
Cyprininae	ANCESTRAL SPECIES	1263														ENSGT00940000155656.x	ENSGT00940000164935.b.k.b	ENSGT00940000157723.c.b #22
Cyprininae_a	ANCESTRAL SPECIES	928														ENSGT00940000155656.x	ENSGT00940000164935.b.k.b	ENSGT00940000157723.c.b #22
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	34	ENSCCRG00000073500	ENSCCRG00000027697	ufl1 (ENSCCRG00000079835)	GPR63 (ENSCCRG00000015550)	NDUFAF4 (ENSCCRG00000015546)	fynb (ENSCCRG00000015327)	ENSCCRG00000015289	ccn6 (ENSCCRG00000003023)	tube1 (ENSCCRG00000037750)	lama4 (ENSCCRG00000033581)	marcksa (ENSCCRG00000035694)	cebpz (ENSCCRG00000050486)	ndufaf7 (ENSCCRG00000050493)	rps6kc1 (ENSCCRG00000016042)	spint1b (ENSCCRG00000071651)	ENSCCRG00000037534 #22	ENSCCRG00000068016	ENSCCRG00000068780	ENSCCRG00000014213	ENSCCRG00000013854	ENSCCRG00000058990	ENSCCRG00000050291	ENSCCRG00000072426	ENSCCRG00000029135	tshr (ENSCCRG00000029075)	ENSCCRG00000061663	ENSCCRG00000057724	nrxn3b (ENSCCRG00000062580)	ENSCCRG00000063467	snw1 (ENSCCRG00000052579)	sptlc2b (ENSCCRG00000073465)
Common carp reference	MODERN SPECIES	28	smyd2b (ENSCCRG00000023358)	ENSCCRG00000067843	FRK (ENSCCRG00000045923)	nt5dc1 (ENSCCRG00000069029)	COL10A1 (ENSCCRG00000076105)	dse (ENSCCRG00000049243)	ufl1 (ENSCCRG00000024687)	ENSCCRG00000004150	ENSCCRG00000056471	fynb (ENSCCRG00000056134)	ENSCCRG00000004191	ENSCCRG00000009697	ENSCCRG00000064624	rps6kc1 (ENSCCRG00000011581)	ENSCCRG00000029990	ENSCCRG00000012339 #22	ENSCCRG00000012354	ENSCCRG00000022269	ENSCCRG00000036293	ENSCCRG00000055263	ENSCCRG00000064504	tshr (ENSCCRG00000049861)	ENSCCRG00000071579	ENSCCRG00000057583	ENSCCRG00000060667	nrxn3b (ENSCCRG00000027234)	ENSCCRG00000035307	ENSCCRG00000073302	snw1 (ENSCCRG00000023924)	sptlc2b (ENSCCRG00000013553)	ism2b (ENSCCRG00000024399)
Otomorpha	ANCESTRAL SPECIES	588													ENSGT00950000182941.a.a.a.a	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723.d #22	ENSGT00550000074878
Clupeiformes	ANCESTRAL SPECIES	185	ENSGT00530000065281	ENSGT00390000012588	ENSGT00940000155566	ENSGT00940000164803	ENSGT00950000183117.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000159826	ENSGT00940000163170	ENSGT00940000161401	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00950000182985.b.a #20	ENSGT00390000004348 #21	ENSGT00940000157723.d #22	ENSGT00550000074878
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	275													nbas (ENSDCDG00000012451)	lratd1 (ENSDCDG00000012416)	ENSDCDG00000012391	ENSDCDG00000012384 #22	tcp1 (ENSDCDG00000011715)	ppp1r14c (ENSDCDG00000011704) #20	iyd (ENSDCDG00000011659) #21	PLEKHG1 (ENSDCDG00000011631) #22	tcp1 (ENSDCDG00000011394)	elovl4b (ENSDCDG00000011307)	tent5ab (ENSDCDG00000011282)	ENSDCDG00000011267	smek1 (ENSDCDG00000011204)	lratd1 (ENSDCDG00000010930)	SCML4 (ENSDCDG00000010921)	sec63 (ENSDCDG00000010749)	ENSDCDG00000010706	usta (ENSDCDG00000010632)	slc22a16 (ENSDCDG00000010598)
Denticle herring	MODERN SPECIES	275									nbas (ENSDCDG00000012451)	lratd1 (ENSDCDG00000012416)	ENSDCDG00000012391	ENSDCDG00000012384 #22	tcp1 (ENSDCDG00000011715)	ppp1r14c (ENSDCDG00000011704) #20	iyd (ENSDCDG00000011659) #21	PLEKHG1 (ENSDCDG00000011631) #22	tcp1 (ENSDCDG00000011394)	elovl4b (ENSDCDG00000011307)	tent5ab (ENSDCDG00000011282)	ENSDCDG00000011267	smek1 (ENSDCDG00000011204)	lratd1 (ENSDCDG00000010930)	SCML4 (ENSDCDG00000010921)	sec63 (ENSDCDG00000010749)	ENSDCDG00000010706	usta (ENSDCDG00000010632)	slc22a16 (ENSDCDG00000010598)	ENSDCDG00000010581	ENSDCDG00000010573	ENSDCDG00000010565	ENSDCDG00000010547
Atlantic herring	MODERN SPECIES	6	ENSCHAG00000024875	irak1bp1 (ENSCHAG00000024881)	tbx18 (ENSCHAG00000024883)	ENSCHAG00000024897	selenoi (ENSCHAG00000024907)	sesn1 (ENSCHAG00000024966)	ENSCHAG00000025042	rpain (ENSCHAG00000025061)	FOXO3 (ENSCHAG00000025066)	afg1lb (ENSCHAG00000025071)	snx3 (ENSCHAG00000025091)	nr2e1 (ENSCHAG00000025099)	OSTM1 (ENSCHAG00000025111)	ppp1r14c (ENSCHAG00000025115) #20	iyd (ENSCHAG00000000452) #21	PLEKHG1 (ENSCHAG00000000529) #22	tcp1 (ENSCHAG00000000740)	elovl4b (ENSCHAG00000000881)	tent5ab (ENSCHAG00000000951)	PRSS35 (ENSCHAG00000000988)	ENSCHAG00000001038	smek1 (ENSCHAG00000001226)	ENSCHAG00000001796	mycn (ENSCHAG00000001824)	DDX1 (ENSCHAG00000002054)	nbas (ENSCHAG00000002963)	ENSCHAG00000009503	ENSCHAG00000009542	ENSCHAG00000009549	sec63 (ENSCHAG00000009562)	usta (ENSCHAG00000009716)
Otophysi	ANCESTRAL SPECIES	321																ENSGT00940000157723.d #22	ENSGT00550000074878	ENSGT00390000000155.b.a	ENSGT00940000157191.d	ENSGT01050000244838.D.a.b	ENSGT00950000182982.C.c.b	ENSGT00390000000358.z	ENSGT00940000159567.a.b	ENSGT00940000165797	ENSGT00940000160862	ENSGT00940000158080	ENSGT00950000182963.b.a.c	ENSGT00940000163807	ENSGT00940000172200
Characiphysae	ANCESTRAL SPECIES	16																ENSGT00940000157723.d #22	ENSGT00550000074878	ENSGT00390000000155.b.a	ENSGT00940000157191.d	ENSGT01050000244838.D.a.b	ENSGT00950000182982.C.c.b	ENSGT00390000000358.z	ENSGT00940000159567.a.b	ENSGT00940000165797	ENSGT00940000160862	ENSGT00940000158080	ENSGT00950000182963.b.a.c	ENSGT00940000163807	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b
Characiphysae_b	ANCESTRAL SPECIES	181																ENSGT00940000157723.d #22	ENSGT00550000074878	ENSGT00390000000155.b.a	ENSGT00940000157191.d	ENSGT01050000244838.D.a.b	ENSGT00950000182982.C.c.b	ENSGT00390000000358.z	ENSGT00940000159567.a.b	ENSGT00940000165797	ENSGT00940000160862	ENSGT00940000158080	ENSGT00950000182963.b.a.c	ENSGT00940000163807	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b
Characoidei	ANCESTRAL SPECIES	404															ENSGT00950000182879.a.a.b	ENSGT00940000157723.d #22	ENSGT00550000074878	ENSGT00390000000155.b.a	ENSGT00940000157191.d
Red-bellied piranha	MODERN SPECIES	558							ENSPNAG00000019713	ENSPNAG00000019698	ENSPNAG00000007058	ENSPNAG00000019656	ENSPNAG00000019647	ENSPNAG00000019636	ENSPNAG00000019606	ENSPNAG00000019501	ENSPNAG00000019465	PLEKHG1 (ENSPNAG00000019445) #22	tcp1 (ENSPNAG00000019425)	PRSS35 (ENSPNAG00000005248)	tent5ab (ENSPNAG00000019355)
Mexicana tetra	MODERN SPECIES	6	tec (ENSAMXG00000019793)	ENSAMXG00000019769	g3bp2b (ENSAMXG00000004459)	CDKL2 (ENSAMXG00000004449)	ENSAMXG00000004426	ENSAMXG00000004397	CORIN (ENSAMXG00000004363)	NFXL1 (ENSAMXG00000004309)	ENSAMXG00000037466	ENSAMXG00000034579	ENSAMXG00000038049	ENSAMXG00000035322	ENSAMXG00000005148	ENSAMXG00000031802	ENSAMXG00000010740	PLEKHG1 (ENSAMXG00000010782) #22	tcp1 (ENSAMXG00000010825)	PRSS35 (ENSAMXG00000024981)	tent5ab (ENSAMXG00000033334)	ENSAMXG00000042465	eno1a (ENSAMXG00000024777)	CA6 (ENSAMXG00000031060)	slc2a5 (ENSAMXG00000024779)	gpr157 (ENSAMXG00000034944)	spsb1 (ENSAMXG00000039905)	ENSAMXG00000033833	rap1gapa (ENSAMXG00000041806)	slc2a1a (ENSAMXG00000024783)	phc2a (ENSAMXG00000024784)	ENSAMXG00000024785	ENSAMXG00000032942
Channel catfish	MODERN SPECIES	6	zgc:158659 (ENSIPUG00000003405)	MEPCE (ENSIPUG00000003387)	ENSIPUG00000003374	ENSIPUG00000003363	ENSIPUG00000003339	cfi (ENSIPUG00000003259)	sgms2b (ENSIPUG00000003241)	ENSIPUG00000003218	AIMP1 (ENSIPUG00000003203)	ENSIPUG00000003183	ENSIPUG00000003179	ddx58 (ENSIPUG00000003114)	ENSIPUG00000003098	ENSIPUG00000002950	prelid1b (ENSIPUG00000002915)	ENSIPUG00000002888 #22	PRSS35 (ENSIPUG00000002875)	tcp1 (ENSIPUG00000002853)	tent5ab (ENSIPUG00000002850)	ELOVL4 (ENSIPUG00000002837)	ENSIPUG00000002826	ENSIPUG00000002818	rnf146 (ENSIPUG00000002813)	ENSIPUG00000002781	Mdp1 (ENSIPUG00000002764)	tmem27 (ENSIPUG00000002753)	ENSIPUG00000002736	NHS (ENSIPUG00000002726)	ENSIPUG00000002714	scp2b (ENSIPUG00000002702)	podn (ENSIPUG00000002686)
Cyprinoidei	ANCESTRAL SPECIES	83	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a.q	ENSGT00950000183204.b.b.a	ENSGT00390000010101	ENSGT00940000153467.a.a.fc.a	ENSGT00940000162200.a.a	ENSGT00940000167983	ENSGT00950000183177.a.b.a	ENSGT00940000158340	ENSGT00390000007586.a.b	ENSGT00940000160357	ENSGT01100000263547.a.b.b.a.a.a.a.a	ENSGT00940000159588	ENSGT01030000235096	ENSGT00940000155482	ENSGT00940000157723.d #22	ENSGT00550000074878	ENSGT00390000000155.b.a	ENSGT00940000154681.b.c	ENSGT00530000063829.C.b	ENSGT00940000156917.a	ENSGT00730000111114	ENSGT00940000155006.e.b.b	ENSGT00940000158901	ENSGT00950000182893.a.a.b.a	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT01100000263524.B.b.a.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	459													ENSGT00940000158340.g	ENSGT00390000007586.a.b.a	ENSGT00940000160357.e.a	ENSGT00940000157723.d.c #22	ENSGT00550000074878	ENSGT00390000000155.b.a.c	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.b.a.b.b.a.a	ENSGT00940000154681.b.c.a	ENSGT00530000063829.C.b.a.b	ENSGT00940000156917.a.b	ENSGT00730000111114.c	ENSGT00940000158901.e	ENSGT00950000182893.a.a.b.a.a	ENSGT00940000160486.c.c	ENSGT00950000182909.b.b.a.f	ENSGT00530000063956.a	ENSGT00940000164679.eb.d.b.a	ENSGT00940000157210	ENSGT00940000158138.g
Goldfish	MODERN SPECIES	57	ogfr (ENSCARG00000022882)	MTG2 (ENSCARG00000022892)	ENSCARG00000022902	NUP210 (ENSCARG00000022906)	IQSEC1 (ENSCARG00000022953)	ENSCARG00000023007	ENSCARG00000023008	ENSCARG00000023009	cnbpa (ENSCARG00000023017)	raf1a (ENSCARG00000023115)	syn2a (ENSCARG00000025554)	prdm5 (ENSCARG00000025578)	ndnf (ENSCARG00000025663)	CPEB2 (ENSCARG00000025691)	ENSCARG00000026334	PLEKHG1 (ENSCARG00000026347) #22	tcp1 (ENSCARG00000026367)	ENSCARG00000026478	snai1b (ENSCARG00000026486)	ENSCARG00000026503	GGT7 (ENSCARG00000026523)	NCOA6 (ENSCARG00000026591)	ENSCARG00000026627	plcg1 (ENSCARG00000026709)	zhx3b (ENSCARG00000028175)	rab5if (ENSCARG00000028182)	mafba (ENSCARG00000028185)	rnf114 (ENSCARG00000028192)	spata2 (ENSCARG00000028196)	ENSCARG00000028206	pacsin1a (ENSCARG00000028221)
Cyprininae_a	ANCESTRAL SPECIES	367										ENSGT00940000158340.g	ENSGT00390000007586.a.b.a	ENSGT00940000160357.e.a	ENSGT01100000263547.a.b.b.a.a.a.a.a	ENSGT00940000159588.e	ENSGT00940000155482.b	ENSGT00940000157723.d.c #22	ENSGT00550000074878.ob	ENSGT00390000000155.b.a.c	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.b.a.b.b.a.a	ENSGT00940000154681.b.c.a	ENSGT00530000063829.C.b.a.b	ENSGT00940000156917.a.b	ENSGT00730000111114.c	ENSGT00940000155006.e.b.b	ENSGT00940000158901.e	ENSGT00950000182893.a.a.b.a.a	ENSGT00390000004786.g.b	ENSGT00940000160486.c.c	ENSGT00950000182909.b.b.a.f	ENSGT00530000063956.a	ENSGT00940000164679.eb.d.b.a
Golden-line barbel	MODERN SPECIES	658											prdm5 (ENSSGRG00000023987)	ndnf (ENSSGRG00000023988)	CPEB2 (ENSSGRG00000023999)	ENSSGRG00000024402	ENSSGRG00000024404	PLEKHG1 (ENSSGRG00000024408) #22	tcp1 (ENSSGRG00000024470)	PRSS35 (ENSSGRG00000024661)	ENSSGRG00000024663	ENSSGRG00000024664	snai1b (ENSSGRG00000024665)	ENSSGRG00000024666	GGT7 (ENSSGRG00000024667)
Common carp reference	MODERN SPECIES	11	stxbp3 (ENSCCRG00000002710)	ENSCCRG00000002753	ENSCCRG00000042350	fbxo30b (ENSCCRG00000042336)	ENSCCRG00000073881	ENSCCRG00000063533	ENSCCRG00000078021	ENSCCRG00000074702	ENSCCRG00000042344	prdm5 (ENSCCRG00000022853)	ndnf (ENSCCRG00000055993)	CPEB2 (ENSCCRG00000073539)	ENSCCRG00000033104	ENSCCRG00000013509	ENSCCRG00000060531	ENSCCRG00000022612 #22	ENSCCRG00000070429	tcp1 (ENSCCRG00000022560)	ENSCCRG00000076275	ENSCCRG00000059595	ENSCCRG00000074563	ENSCCRG00000039558	snai1b (ENSCCRG00000022786)	ENSCCRG00000075756	ENSCCRG00000071709	ENSCCRG00000082092	TOP1 (ENSCCRG00000032166)	plcg1 (ENSCCRG00000032195)	zhx3b (ENSCCRG00000075543)	ENSCCRG00000065758	ENSCCRG00000074500
Cyprininae	ANCESTRAL SPECIES	168	ENSGT00940000157064.a.b.b.a.a.q	ENSGT00950000183204.b.b.a.h	ENSGT00390000010101	ENSGT00940000153467.a.a.fc.a	ENSGT00940000162200.a.a	ENSGT00940000167983	ENSGT00950000183177.a.b.a.e	ENSGT00940000158340.h	ENSGT00390000007586.a.b.b	ENSGT00940000160357.e.b	ENSGT00940000159588.f	ENSGT01030000235096	ENSGT01100000263547.a.b.b.a.a.a.a.a	ENSGT00940000159588.e	ENSGT00940000155482	ENSGT00940000157723.d.d #22	ENSGT00390000000155.b.a.d	ENSGT00940000154681.b.c.b	ENSGT00530000063829.C.b.b	ENSGT00940000156917.a.a	ENSGT00730000111114.d	ENSGT00940000155006.e.b.b	ENSGT00940000158901.f	ENSGT00950000182893.a.a.b.a.b	ENSGT00390000004786	ENSGT00940000156142	ENSGT00940000160486.c.d	ENSGT00950000182909.b.b.a.e
Goldfish	MODERN SPECIES	15	ENSCARG00000009362	TGM1 (ENSCARG00000009370)	stxbp3 (ENSCARG00000009436)	ENSCARG00000009871	fbxo30b (ENSCARG00000009881)	EPM2A (ENSCARG00000009885)	psmb11b (ENSCARG00000010046)	ENSCARG00000010060	slc34a2b (ENSCARG00000010136)	prdm5 (ENSCARG00000011170)	ndnf (ENSCARG00000011190)	CPEB2 (ENSCARG00000011220)	C1QTNF7 (ENSCARG00000011637)	ENSCARG00000011642	CC2D2A (ENSCARG00000011654)	PLEKHG1 (ENSCARG00000011944) #22	tcp1 (ENSCARG00000011994)	PRSS35 (ENSCARG00000012115)	snai1b (ENSCARG00000012120)	TP53INP2 (ENSCARG00000012126)	GGT7 (ENSCARG00000012143)	ENSCARG00000012843	TOP1 (ENSCARG00000012904)	plcg1 (ENSCARG00000013028)	zhx3b (ENSCARG00000013954)	rab5if (ENSCARG00000013958)	dhx35 (ENSCARG00000013970)	mafba (ENSCARG00000014042)	pacsin1a (ENSCARG00000014066)	ENSCARG00000014154	rnf114 (ENSCARG00000014157)
Cyprininae_a	ANCESTRAL SPECIES	79	ENSGT00940000157607.d	ENSGT00390000004674.i.b.b	ENSGT00940000157064.a.b.b.a.a.q.b	ENSGT00950000183204.b.b.a.h	ENSGT00390000010101	ENSGT00940000153467.a.a.fc.a	ENSGT00940000162200.a.a	ENSGT00940000167983	ENSGT00950000183177.a.b.a.f	ENSGT00950000183177.a.b.a.e	ENSGT00940000158340.h	ENSGT00390000007586.a.b.b	ENSGT00940000160357.e.b	ENSGT00940000159588.f	ENSGT00940000155482.a.a	ENSGT00940000157723.d.d #22	ENSGT00550000074878.nb	ENSGT00390000000155.b.a.d	ENSGT00940000154681.b.c.b	ENSGT00530000063829.C.b.b	ENSGT00940000156917.a.a	ENSGT00730000111114.d	ENSGT00390000003058.b.a.b.l	ENSGT00940000158901.f	ENSGT00950000182893.a.a.b.a.b	ENSGT00390000004786.g.a	ENSGT00940000156142	ENSGT00940000160486.c.d	ENSGT00950000182909.b.b.a.e
Common carp reference	MODERN SPECIES	49	fbxo30b (ENSCCRG00000075189)	ENSCCRG00000028820	ENSCCRG00000064920	ENSCCRG00000058773	ENSCCRG00000079354	ENSCCRG00000044025	ENSCCRG00000009434	ENSCCRG00000056131	prdm5 (ENSCCRG00000022838)	ndnf (ENSCCRG00000082518)	ENSCCRG00000068117	CPEB2 (ENSCCRG00000065707)	ENSCCRG00000064419	CC2D2A (ENSCCRG00000030164)	ENSCCRG00000070182	ENSCCRG00000029020 #22	ENSCCRG00000070334	ENSCCRG00000061091	tcp1 (ENSCCRG00000067021)	ENSCCRG00000065015	snai1b (ENSCCRG00000024135)	ENSCCRG00000071710	ENSCCRG00000056902	ENSCCRG00000076996	plcg1 (ENSCCRG00000060325)	zhx3b (ENSCCRG00000057491)	rab5if (ENSCCRG00000038048)	dhx35 (ENSCCRG00000049267)	mafba (ENSCCRG00000063775)	rnf114 (ENSCCRG00000060470)	spata2 (ENSCCRG00000071221)
Golden-line barbel	MODERN SPECIES	363							UTRN (ENSSGRG00000032806)	psmb11b (ENSSGRG00000033564)	slc34a2b (ENSSGRG00000033567)	prdm5 (ENSSGRG00000033569)	ENSSGRG00000033572	ndnf (ENSSGRG00000033575)	CPEB2 (ENSSGRG00000033580)	C1QTNF7 (ENSSGRG00000033587)	CC2D2A (ENSSGRG00000033591)	PLEKHG1 (ENSSGRG00000033598) #22	tcp1 (ENSSGRG00000033620)	ENSSGRG00000034393	snai1b (ENSSGRG00000034394)	TP53INP2 (ENSSGRG00000034395)
Zebrafish	MODERN SPECIES	15	psmb11b (ENSDARG00000068086)	UTRN (ENSDARG00000100222)	ENSDARG00000098793	EPM2A (ENSDARG00000059044)	fbxo30b (ENSDARG00000019311)	ENSDARG00000075676	ENSDARG00000108006	stxbp3 (ENSDARG00000008142)	rabggta (ENSDARG00000061024)	TGM1 (ENSDARG00000017799)	prdm5 (ENSDARG00000006288)	ndnf (ENSDARG00000062936)	CPEB2 (ENSDARG00000052604)	C1QTNF7 (ENSDARG00000074949)	CC2D2A (ENSDARG00000090971)	ENSDARG00000111585 #22	tcp1 (ENSDARG00000017891)	PRSS35 (ENSDARG00000059081)	snai1b (ENSDARG00000046019)	ENSDARG00000109769	GGT7 (ENSDARG00000115805)	ENSDARG00000115082	ENSDARG00000071272	zgc:114123 (ENSDARG00000044956)	TOP1 (ENSDARG00000086775)	plcg1 (ENSDARG00000038442)	zhx3b (ENSDARG00000019774)	rab5if (ENSDARG00000074790)	dhx35 (ENSDARG00000063419)	mafba (ENSDARG00000017121)	rnf114 (ENSDARG00000009886)
Euteleosteomorpha	ANCESTRAL SPECIES	81	ENSGT00530000063583.b	ENSGT00950000182962.b.b	ENSGT01060000248564.b.a.a.b	ENSGT00550000074943	ENSGT00740000115564	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000157723 #22	ENSGT00550000074878
Acanthomorphata	ANCESTRAL SPECIES	59	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.C	ENSGT00940000155086.B	ENSGT00940000153804.A
Cod	MODERN SPECIES	13	mrps10 (ENSGMOG00000014270)	msgn1 (ENSGMOG00000014284)	ENSGMOG00000014295	PPIL6 (ENSGMOG00000014325)	cd164 (ENSGMOG00000022181)	cep57l1 (ENSGMOG00000014394)	ENSGMOG00000022278	sesn1 (ENSGMOG00000005675)	ARMC2 (ENSGMOG00000005690)	foxo3b (ENSGMOG00000035821)	ENSGMOG00000024666	afg1lb (ENSGMOG00000016004)	snx3 (ENSGMOG00000016029)	nr2e1 (ENSGMOG00000016036)	OSTM1 (ENSGMOG00000016051)	ENSGMOG00000022936 #22	TCP1 (ENSGMOG00000001647)	acat2 (ENSGMOG00000001630)	wtap (ENSGMOG00000001613)	sod2 (ENSGMOG00000001602)	FNDC1 (ENSGMOG00000001515)	otofa (ENSGMOG00000001446)	drc1 (ENSGMOG00000001177)	paplnb (ENSGMOG00000001137)	ENSGMOG00000001125	smek1 (ENSGMOG00000001099)	mycn (ENSGMOG00000025424)	ENSGMOG00000013706	ENSGMOG00000026789	efhc1 (ENSGMOG00000013731)	ENSGMOG00000013745
Euacanthomorphacea	ANCESTRAL SPECIES	13	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000180091	ENSGT00940000154096.b.b.a	ENSGT00940000178209	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.C	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00940000178331	ENSGT00390000000663
Pinecone sodierfish	MODERN SPECIES	16	ENSMMDG00005022349	GRIK2 (ENSMMDG00005022353)	lin28b (ENSMMDG00005022386)	prep (ENSMMDG00005022389)	ENSMMDG00005022404	xkr5a (ENSMMDG00005022407)	tram2 (ENSMMDG00005022412)	efhc1 (ENSMMDG00005022444)	ENSMMDG00005022446	ENSMMDG00005022447	mrpl19 (ENSMMDG00005022448)	mycn (ENSMMDG00005022449)	smek1 (ENSMMDG00005022460)	ENSMMDG00005022836	paplnb (ENSMMDG00005022838)	PLEKHG1 (ENSMMDG00005022840) #22	tcp1 (ENSMMDG00005022846)	acat2 (ENSMMDG00005022853)	wtap (ENSMMDG00005022860)	sod2 (ENSMMDG00005022866)	FNDC1 (ENSMMDG00005022994)	otofa (ENSMMDG00005023012)	drc1 (ENSMMDG00005023125)	OSTM1 (ENSMMDG00005023128)	nr2e1 (ENSMMDG00005023129)	snx3 (ENSMMDG00005002559)	afg1lb (ENSMMDG00005002572)	foxo3b (ENSMMDG00005002624)	ENSMMDG00005002632	ARMC2 (ENSMMDG00005002639)	sesn1 (ENSMMDG00005002663)
Percomorphaceae	ANCESTRAL SPECIES	14	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000180091	ENSGT00940000154096.b.b.a	ENSGT00940000178209	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.C	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00940000178331	ENSGT00390000000663
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	450	ENSHCOG00000014550	MDGA2 (ENSHCOG00000014586)	hsp90aa1.1 (ENSHCOG00000014614)	HSP90AA1 (ENSHCOG00000014636)	ppp2r5cb (ENSHCOG00000014671)	ENSHCOG00000014684	ENSHCOG00000000411	slc25a47a (ENSHCOG00000014703)	slc25a29 (ENSHCOG00000014732)	sod2 (ENSHCOG00000014748)	ENSHCOG00000014761	wtap (ENSHCOG00000014785)	acat2 (ENSHCOG00000014816)	ENSHCOG00000014809	ENSHCOG00000014907	ENSHCOG00000014921 #22	PLEKHG1 (ENSHCOG00000014925) #22	tcp1 (ENSHCOG00000014951)	smek1 (ENSHCOG00000014980)	mycn (ENSHCOG00000015013)	mrpl19 (ENSHCOG00000015019)	ENSHCOG00000015026	efhc1 (ENSHCOG00000015031)	tram2 (ENSHCOG00000015072)
Tiger tail seahorse	MODERN SPECIES	450	MDGA2 (ENSHCOG00000014586)	hsp90aa1.1 (ENSHCOG00000014614)	HSP90AA1 (ENSHCOG00000014636)	ppp2r5cb (ENSHCOG00000014671)	ENSHCOG00000014684	ENSHCOG00000000411	slc25a47a (ENSHCOG00000014703)	slc25a29 (ENSHCOG00000014732)	sod2 (ENSHCOG00000014748)	ENSHCOG00000014761	wtap (ENSHCOG00000014785)	acat2 (ENSHCOG00000014816)	ENSHCOG00000014809	ENSHCOG00000014907	ENSHCOG00000014921 #22	PLEKHG1 (ENSHCOG00000014925) #22	tcp1 (ENSHCOG00000014951)	smek1 (ENSHCOG00000014980)	mycn (ENSHCOG00000015013)	mrpl19 (ENSHCOG00000015019)	ENSHCOG00000015026	efhc1 (ENSHCOG00000015031)	tram2 (ENSHCOG00000015072)
Percomorphaceae_B	ANCESTRAL SPECIES	18	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000180091	ENSGT00940000154096.b.b.a	ENSGT00940000178209	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000173939	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.C	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00940000178331	ENSGT00390000000663
Percomorphaceae_C	ANCESTRAL SPECIES	19	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00940000178209	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000173939	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00940000178331	ENSGT00390000000663	ENSGT00950000183168.B.b
Percomorphaceae_D	ANCESTRAL SPECIES	18	ENSGT00940000156143.a.b	ENSGT00390000008152.A	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00390000000663	ENSGT00950000183168.B.b	ENSGT00530000063695.b
Anabantaria	ANCESTRAL SPECIES	20	ENSGT00940000161952	ENSGT00940000156143.a.b	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00390000000663	ENSGT00950000183168.B.b	ENSGT00530000063695.b
Anabantoidei	ANCESTRAL SPECIES	15	ENSGT00940000161952	ENSGT00940000156143.a.b	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00390000000663	ENSGT00950000183168.B.b	ENSGT00530000063695.b
Climbing perch	MODERN SPECIES	15	ENSATEG00000014254	ENSATEG00000014211	ENSATEG00000014169	ENSATEG00000014088	prep (ENSATEG00000014056)	ENSATEG00000014034	xkr5a (ENSATEG00000014004)	tram2 (ENSATEG00000013975)	ENSATEG00000013913	ENSATEG00000027883	ENSATEG00000013886	mycn (ENSATEG00000029948)	ENSATEG00000013845	ENSATEG00000026335	paplnb (ENSATEG00000013766)	ENSATEG00000013758 #22	TCP1 (ENSATEG00000013715)	acat2 (ENSATEG00000013681)	wtap (ENSATEG00000013657)	sod2 (ENSATEG00000013630)	FNDC1 (ENSATEG00000025404)	otofa (ENSATEG00000013468)	ENSATEG00000013422	OSTM1 (ENSATEG00000013366)	nr2e1 (ENSATEG00000013336)	snx3 (ENSATEG00000028012)	afg1lb (ENSATEG00000013291)	foxo3b (ENSATEG00000013282)	ARMC2 (ENSATEG00000013216)	sesn1 (ENSATEG00000013150)	cep57l1 (ENSATEG00000013115)
Siamese fighting fish	MODERN SPECIES	13	ripply2 (ENSBSLG00000013340)	sim1a (ENSBSLG00000013187)	GRIK2 (ENSBSLG00000010881)	lin28b (ENSBSLG00000010592)	prep (ENSBSLG00000010035)	ENSBSLG00000010007	xkr5a (ENSBSLG00000009977)	tram2 (ENSBSLG00000009183)	efhc1 (ENSBSLG00000008976)	ENSBSLG00000008936	mrpl19 (ENSBSLG00000008908)	mycn (ENSBSLG00000008457)	smek1 (ENSBSLG00000008129)	ERH (ENSBSLG00000008104)	paplnb (ENSBSLG00000008077)	PLEKHG1 (ENSBSLG00000008026) #22	tcp1 (ENSBSLG00000007940)	wtap (ENSBSLG00000007744)	sod2 (ENSBSLG00000007119)	FNDC1 (ENSBSLG00000007069)	drc1 (ENSBSLG00000007006)	OSTM1 (ENSBSLG00000006938)	nr2e1 (ENSBSLG00000006905)	snx3 (ENSBSLG00000006871)	drc1 (ENSBSLG00000006632)	OSTM1 (ENSBSLG00000006564)	nr2e1 (ENSBSLG00000006538)	snx3 (ENSBSLG00000006476)	afg1lb (ENSBSLG00000006399)	foxo3b (ENSBSLG00000006344)	ARMC2 (ENSBSLG00000005756)
Zig-zag eel	MODERN SPECIES	16	ripply2 (ENSMAMG00000006564)	ENSMAMG00000006584	ENSMAMG00000006597	ENSMAMG00000006635	prep (ENSMAMG00000006757)	ENSMAMG00000006790	xkr5a (ENSMAMG00000006796)	tram2 (ENSMAMG00000024315)	efhc1 (ENSMAMG00000006869)	ENSMAMG00000006878	ENSMAMG00000006902	mycn (ENSMAMG00000006908)	ENSMAMG00000006925	ENSMAMG00000006967	paplnb (ENSMAMG00000007053)	ENSMAMG00000007068 #22	TCP1 (ENSMAMG00000007085)	acat2 (ENSMAMG00000007108)	wtap (ENSMAMG00000027304)	sod2 (ENSMAMG00000007154)	FNDC1 (ENSMAMG00000007183)	otofa (ENSMAMG00000007209)	ENSMAMG00000007292	OSTM1 (ENSMAMG00000007316)	nr2e1 (ENSMAMG00000007321)	snx3 (ENSMAMG00000007349)	afg1lb (ENSMAMG00000025589)	foxo3b (ENSMAMG00000007377)	ARMC2 (ENSMAMG00000007384)	sesn1 (ENSMAMG00000007399)	cep57l1 (ENSMAMG00000007432)
Carangaria	ANCESTRAL SPECIES	18	ENSGT00940000156143.a.b	ENSGT00390000008152.A	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00390000000663	ENSGT00950000183168.B.b	ENSGT00530000063695.b
Carangaria_A	ANCESTRAL SPECIES	13	ENSGT00940000156143.a.b	ENSGT00390000008152.A	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00390000000663	ENSGT00950000183168.B.b	ENSGT00530000063695.b
Seriola	ANCESTRAL SPECIES	4	ENSGT00390000008152.A	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000180577	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00390000000663	ENSGT00950000183168.B.b	ENSGT00530000063695.b
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	MODERN SPECIES	2936	SIM1 (ENSSLDG00000001728)	GRIK2 (ENSSLDG00000001796)	lin28b (ENSSLDG00000001858)	prep (ENSSLDG00000001885)	ENSSLDG00000001957	xkr5a (ENSSLDG00000001988)	tram2 (ENSSLDG00000002009)	efhc1 (ENSSLDG00000002071)	ENSSLDG00000002152	mrpl19 (ENSSLDG00000002195)	mycn (ENSSLDG00000002226)	smek1 (ENSSLDG00000002251)	ENSSLDG00000002313	paplnb (ENSSLDG00000002342)	ENSSLDG00000002356	PLEKHG1 (ENSSLDG00000002378) #22
Yellowtail amberjack	MODERN SPECIES	2272																PLEKHG1 (ENSSLDG00000005370) #22	tcp1 (ENSSLDG00000005262)	acat2 (ENSSLDG00000005309)	wtap (ENSSLDG00000005241)	sod2 (ENSSLDG00000005197)	FNDC1 (ENSSLDG00000005130)
Greater amberjack	MODERN SPECIES	10	ENSSDUG00000000729	GRIK2 (ENSSDUG00000000651)	lin28b (ENSSDUG00000000613)	prep (ENSSDUG00000000552)	ENSSDUG00000000524	xkr5a (ENSSDUG00000000511)	tram2 (ENSSDUG00000000462)	efhc1 (ENSSDUG00000000447)	mrpl19 (ENSSDUG00000000420)	mycn (ENSSDUG00000000413)	ENSSDUG00000000392	smek1 (ENSSDUG00000000333)	ENSSDUG00000000320	paplnb (ENSSDUG00000000272)	ENSSDUG00000000256	PLEKHG1 (ENSSDUG00000000241) #22	tcp1 (ENSSDUG00000000173)	acat2 (ENSSDUG00000000092)	wtap (ENSSDUG00000020070)	sod2 (ENSSDUG00000020057)	FNDC1 (ENSSDUG00000019950)	otofa (ENSSDUG00000019875)	drc1 (ENSSDUG00000019839)	OSTM1 (ENSSDUG00000019798)	nr2e1 (ENSSDUG00000019776)	snx3 (ENSSDUG00000019760)	afg1lb (ENSSDUG00000019727)	foxo3b (ENSSDUG00000019718)	ARMC2 (ENSSDUG00000019699)	sesn1 (ENSSDUG00000019665)	cep57l1 (ENSSDUG00000019647)
Barramundi perch	MODERN SPECIES	66			lin28b (ENSLCAG00010018392)	prep (ENSLCAG00010018417)	ENSLCAG00010018515	xkr5a (ENSLCAG00010018520)	tram2 (ENSLCAG00010018539)	efhc1 (ENSLCAG00010018596)	ENSLCAG00010018604	mrpl19 (ENSLCAG00010018614)	ENSLCAG00010018617	ENSLCAG00010018621	smek1 (ENSLCAG00010018636)	ENSLCAG00010018662	paplnb (ENSLCAG00010018672)	PLEKHG1 (ENSLCAG00010018681) #22	tcp1 (ENSLCAG00010018702)	acat2 (ENSLCAG00010018750)	wtap (ENSLCAG00010018762)	sod2 (ENSLCAG00010018771)	FNDC1 (ENSLCAG00010018791)	otofa (ENSLCAG00010018817)	ENSLCAG00010018863	drc1 (ENSLCAG00010018869)
Pleuronectoidei	ANCESTRAL SPECIES	11	ENSGT00940000156143.a.b	ENSGT00390000008152.A	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a.k	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00390000000663	ENSGT00950000183168.B.b	ENSGT00530000063695.b
Turbot	MODERN SPECIES	12	mrap2b (ENSSMAG00000035004)	ripply2 (ENSSMAG00000033898)	ENSSMAG00000017594	ENSSMAG00000017553	ENSSMAG00000032293	prep (ENSSMAG00000017534)	ENSSMAG00000017518	xkr5a (ENSSMAG00000017512)	tram2 (ENSSMAG00000017472)	ENSSMAG00000017458	ENSSMAG00000017419	ENSSMAG00000017409	mycn (ENSSMAG00000017400)	ENSSMAG00000017349	paplnb (ENSSMAG00000017290)	ENSSMAG00000017272 #22	TCP1 (ENSSMAG00000017148)	wtap (ENSSMAG00000017133)	sod2 (ENSSMAG00000017117)	FNDC1 (ENSSMAG00000017056)	otofa (ENSSMAG00000016888)	ENSSMAG00000016874	OSTM1 (ENSSMAG00000016855)	nr2e1 (ENSSMAG00000016849)	snx3 (ENSSMAG00000024559)	afg1lb (ENSSMAG00000016829)	foxo3b (ENSSMAG00000016818)	ARMC2 (ENSSMAG00000016776)	sesn1 (ENSSMAG00000016729)	cep57l1 (ENSSMAG00000016719)	cd164 (ENSSMAG00000016703)
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES	17	znf410 (ENSCSEG00000002062)	ENSCSEG00000002073	actr10 (ENSCSEG00000002081)	ENSCSEG00000002095	naa30 (ENSCSEG00000002105)	ENSCSEG00000002106	LAMP5 (ENSCSEG00000002107)	ENSCSEG00000002111	PLCB4 (ENSCSEG00000002116)	PLCB1 (ENSCSEG00000002161)	ENSCSEG00000002183	ENSCSEG00000002188	bmp2 (ENSCSEG00000002193)	FERMT1 (ENSCSEG00000002212)	trmt6 (ENSCSEG00000002228)	ENSCSEG00000002232 #22	ENSCSEG00000002242	gpcpd1 (ENSCSEG00000002247)	NAPB (ENSCSEG00000002257)	GZF1 (ENSCSEG00000002270)	TRIB2 (ENSCSEG00000002274)	KLHL29 (ENSCSEG00000002292)	ATAD2B (ENSCSEG00000002360)	UBXN2A (ENSCSEG00000002412)	mfsd2b (ENSCSEG00000002421)	wdcp (ENSCSEG00000002436)	fkbp1b (ENSCSEG00000002439)	mmut (ENSCSEG00000002441)	opn8b (ENSCSEG00000002447)	opn8a (ENSCSEG00000002450)	runx2b (ENSCSEG00000002454)
Tongue sole	MODERN SPECIES	17	pdia6 (ENSCSEG00000020956)	kcnf1a (ENSCSEG00000020961)	ENSCSEG00000020963	ENSCSEG00000020965	rock2b (ENSCSEG00000020966)	sobpb (ENSCSEG00000020972)	ENSCSEG00000020974	ENSCSEG00000020976	mrap2b (ENSCSEG00000020979)	ripply2 (ENSCSEG00000020982)	SIM1 (ENSCSEG00000020985)	ENSCSEG00000021032	ENSCSEG00000021033	GRIK2 (ENSCSEG00000021035)	ENSCSEG00000021038	PLEKHG1 (ENSCSEG00000000275) #22	tram2 (ENSCSEG00000000292)	xkr5a (ENSCSEG00000000301)	ENSCSEG00000000305	prep (ENSCSEG00000000307)	lin28b (ENSCSEG00000000312)	paplnb (ENSCSEG00000000314)	ENSCSEG00000000321	smek1 (ENSCSEG00000000332)	mycn (ENSCSEG00000000346)	mrpl19 (ENSCSEG00000000349)	ENSCSEG00000000354	efhc1 (ENSCSEG00000000362)	efhc1 (ENSCSEG00000000379)	tcp1 (ENSCSEG00000000387)	acat2 (ENSCSEG00000000403)
Eupercaria	ANCESTRAL SPECIES	16	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00940000178209	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000173939	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00940000178331	ENSGT00390000000663	ENSGT00950000183168.B.b
Tetraodontidae	ANCESTRAL SPECIES	15	ENSGT00940000156143.a.b	ENSGT00390000008152.A	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00990000211308	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00390000000663	ENSGT00950000183168.B.b	ENSGT00530000063695.b
Fugu	MODERN SPECIES	7	ripply2 (ENSTRUG00000018263)	sim1a (ENSTRUG00000018267)	ENSTRUG00000027585	ENSTRUG00000018275	lin28b (ENSTRUG00000028901)	prep (ENSTRUG00000008072)	ENSTRUG00000007847	xrg5 (ENSTRUG00000007765)	tram2 (ENSTRUG00000007487)	efhc1 (ENSTRUG00000007418)	ENSTRUG00000023346	mrpl19 (ENSTRUG00000007313)	mycn (ENSTRUG00000026111)	smek1 (ENSTRUG00000006781)	ERH (ENSTRUG00000024367)	PLEKHG1 (ENSTRUG00000006405) #22	tcp1 (ENSTRUG00000005967)	wtap (ENSTRUG00000005409)	sod2 (ENSTRUG00000005242)	FNDC1 (ENSTRUG00000004949)	otofa (ENSTRUG00000003831)	ENSTRUG00000002802	OSTM1 (ENSTRUG00000002434)	NR2E1 (ENSTRUG00000001893)	snx3 (ENSTRUG00000023871)	afg1lb (ENSTRUG00000032686)	foxo3b (ENSTRUG00000001458)	ARMC2 (ENSTRUG00000001327)	sesn1 (ENSTRUG00000001205)	cep57l1 (ENSTRUG00000009028)	cd164 (ENSTRUG00000031789)
Tetraodon	MODERN SPECIES	5	ENSTNIG00000012305	sim1a (ENSTNIG00000012304)	GRIK2 (ENSTNIG00000012303)	lin28b (ENSTNIG00000012302)	prep (ENSTNIG00000012301)	ENSTNIG00000001052	ENSTNIG00000012300	xkr5a (ENSTNIG00000012299)	tram2 (ENSTNIG00000012298)	efhc1 (ENSTNIG00000012297)	ENSTNIG00000012296	mrpl19 (ENSTNIG00000012295)	mycn (ENSTNIG00000012294)	ENSTNIG00000012293	ENSTNIG00000012292	PLEKHG1 (ENSTNIG00000012291) #22	tcp1 (ENSTNIG00000012290)	acat2 (ENSTNIG00000012289)	wtap (ENSTNIG00000012288)	sod2 (ENSTNIG00000012287)	ENSTNIG00000012286	ENSTNIG00000012285	otofa (ENSTNIG00000012284)	ENSTNIG00000012283	nr2e1 (ENSTNIG00000012282)	snx3 (ENSTNIG00000012281)	afg1lb (ENSTNIG00000012280)	ENSTNIG00000012279	ARMC2 (ENSTNIG00000012278)	sesn1 (ENSTNIG00000012277)	cep57l1 (ENSTNIG00000012276)
Eupecaria_A	ANCESTRAL SPECIES	16	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00940000178209	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000173939	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00940000178331	ENSGT00390000000663	ENSGT00950000183168.B.b
Ballan wrasse	MODERN SPECIES	52																PLEKHG1 (ENSLBEG00000013520) #22	tcp1 (ENSLBEG00000013564)	ENSLBEG00000013623	acat2 (ENSLBEG00000013733)	wtap (ENSLBEG00000013802)	sod2 (ENSLBEG00000013851)	ENSLBEG00000013873	otofa (ENSLBEG00000014067)	ENSLBEG00000014359	OSTM1 (ENSLBEG00000014388)	nr2e1 (ENSLBEG00000014424)	snx3 (ENSLBEG00000014465)	afg1lb (ENSLBEG00000014493)	foxo3b (ENSLBEG00000014513)	ARMC2 (ENSLBEG00000014525)	ENSLBEG00000014553
Eupecaria_B	ANCESTRAL SPECIES	16	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00940000178209	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000173939	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00940000178331	ENSGT00390000000663	ENSGT00950000183168.B.b
Perciformes	ANCESTRAL SPECIES	14	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00940000178209	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000173939	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00940000178331	ENSGT00390000000663	ENSGT00950000183168.B.b
Cottioidei	ANCESTRAL SPECIES	25	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00940000178209	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000173939	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00940000178331	ENSGT00390000000663	ENSGT00950000183168.B.b	ENSGT00530000063695.b
Stickleback	MODERN SPECIES	18	SIM1 (ENSGACG00000009479)	GRIK2 (ENSGACG00000009432)	lin28b (ENSGACG00000009428)	prep (ENSGACG00000009366)	ENSGACG00000009358	xkr5a (ENSGACG00000009350)	tram2 (ENSGACG00000009285)	efhc1 (ENSGACG00000009276)	ENSGACG00000009272	mrpl19 (ENSGACG00000009248)	mycn (ENSGACG00000009241)	smek1 (ENSGACG00000009228)	ERH (ENSGACG00000009220)	paplnb (ENSGACG00000009212)	ENSGACG00000009211	PLEKHG1 (ENSGACG00000009204) #22	tcp1 (ENSGACG00000009066)	acat2 (ENSGACG00000009052)	wtap (ENSGACG00000009045)	sod2 (ENSGACG00000009000)	FNDC1 (ENSGACG00000008978)	otofa (ENSGACG00000008956)	ENSGACG00000008950	nr2e1 (ENSGACG00000008934)	snx3 (ENSGACG00000008921)	afg1lb (ENSGACG00000008916)	foxo3b (ENSGACG00000008910)	ARMC2 (ENSGACG00000008903)	sesn1 (ENSGACG00000008895)	cep57l1 (ENSGACG00000008882)	cd164 (ENSGACG00000008876)
Lumpfish	DUPLICATION
Lumpfish	MODERN SPECIES	16	ENSCLMG00005005168	vipas39 (ENSCLMG00005005179)	ENSCLMG00005006958	cdc42bpb (ENSCLMG00005006974)	ENSCLMG00005007050	CKB (ENSCLMG00005007052)	ENSCLMG00005007063	ENSCLMG00005007064	ENSCLMG00005007066	ENSCLMG00005007067	zbtb1 (ENSCLMG00005007068)	myh6 (ENSCLMG00005007070)	PAK6 (ENSCLMG00005007073)	ENSCLMG00005007074	ENSCLMG00005007075	ENSCLMG00005007076 #22	KIF26A (ENSCLMG00005007077)	ccr6a (ENSCLMG00005007080)	cep43 (ENSCLMG00005007083)	mboat2b (ENSCLMG00005007087)	kidins220b (ENSCLMG00005007090)	ENSCLMG00005007095	allc (ENSCLMG00005007099)	asap2b (ENSCLMG00005007128)	ENSCLMG00005010135	rrm2 (ENSCLMG00005010159)	ENSCLMG00005010162	ENSCLMG00005010163	ENSCLMG00005010164	ENSCLMG00005010166	ENSCLMG00005010180
Lumpfish	MODERN SPECIES	16	ENSCLMG00005017045	ENSCLMG00005017029	lin28b (ENSCLMG00005017026)	prep (ENSCLMG00005017023)	ENSCLMG00005017020	xkr5a (ENSCLMG00005017019)	tram2 (ENSCLMG00005017015)	efhc1 (ENSCLMG00005016685)	ENSCLMG00005016683	ENSCLMG00005016681	mrpl19 (ENSCLMG00005016679)	mycn (ENSCLMG00005016668)	smek1 (ENSCLMG00005016666)	ENSCLMG00005016660	paplnb (ENSCLMG00005016654)	PLEKHG1 (ENSCLMG00005016652) #22	ENSCLMG00005016650	tcp1 (ENSCLMG00005016643)	acat2 (ENSCLMG00005016642)	wtap (ENSCLMG00005016640)	sod2 (ENSCLMG00005016631)	FNDC1 (ENSCLMG00005016626)	otofa (ENSCLMG00005016621)	OSTM1 (ENSCLMG00005016616)	nr2e1 (ENSCLMG00005016608)	snx3 (ENSCLMG00005016599)	afg1lb (ENSCLMG00005016596)	foxo3b (ENSCLMG00005016594)	ENSCLMG00005016591	ARMC2 (ENSCLMG00005016590)	sesn1 (ENSCLMG00005016589)
Perciformes_a	ANCESTRAL SPECIES	15	ENSGT00940000156143.a.b	ENSGT00390000008152.A	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00390000000663	ENSGT00950000183168.B.b	ENSGT00530000063695.b
Pike perch	MODERN SPECIES	4	ENSSLUG00000005843	ENSSLUG00000005870	GRIK2 (ENSSLUG00000005914)	lin28b (ENSSLUG00000006062)	prep (ENSSLUG00000006096)	ENSSLUG00000006356	xkr5a (ENSSLUG00000006372)	tram2 (ENSSLUG00000006387)	efhc1 (ENSSLUG00000006412)	ENSSLUG00000006429	mrpl19 (ENSSLUG00000006444)	mycn (ENSSLUG00000006464)	smek1 (ENSSLUG00000006567)	ENSSLUG00000006670	paplnb (ENSSLUG00000006688)	PLEKHG1 (ENSSLUG00000006706) #22	tcp1 (ENSSLUG00000006740)	acat2 (ENSSLUG00000006773)	wtap (ENSSLUG00000006806)	sod2 (ENSSLUG00000006819)	FNDC1 (ENSSLUG00000006833)	otofa (ENSSLUG00000006951)	drc1 (ENSSLUG00000007488)	OSTM1 (ENSSLUG00000007499)	nr2e1 (ENSSLUG00000007504)	snx3 (ENSSLUG00000007519)	afg1lb (ENSSLUG00000007525)	foxo3b (ENSSLUG00000007540)	ARMC2 (ENSSLUG00000007561)	sesn1 (ENSSLUG00000007600)	cep57l1 (ENSSLUG00000007623)
Channel bull blenny	DUPLICATION
Channel bull blenny	MODERN SPECIES	14	khdrbs1a (ENSCGOG00000002760)	tmem39b (ENSCGOG00000002601)	ccdc28b (ENSCGOG00000002586)	ENSCGOG00000022066	KLHL28 (ENSCGOG00000022065)	C14orf28 (ENSCGOG00000022063)	mthfd1b (ENSCGOG00000021919)	ENSCGOG00000021900	INAFM2 (ENSCGOG00000021899)	PLCB2 (ENSCGOG00000021898)	ANKRD63 (ENSCGOG00000021897)	ENSCGOG00000021896	zfyve19 (ENSCGOG00000021895)	ppp1r14d (ENSCGOG00000021893) ##20	spint1a (ENSCGOG00000021891)	ENSCGOG00000021886 #22	xgb (ENSCGOG00000021875)	srp14 (ENSCGOG00000021879)	PLD4 (ENSCGOG00000021864)	CEP170B (ENSCGOG00000021858)	PAK6 (ENSCGOG00000021808)	ENSCGOG00000021804	siva1 (ENSCGOG00000021802)	adss1 (ENSCGOG00000021667)	INF2 (ENSCGOG00000021629)	ENSCGOG00000021626	dnajc17 (ENSCGOG00000021621)	gchfr (ENSCGOG00000021618)	cyp1c2 (ENSCGOG00000021615)	cyp1c1 (ENSCGOG00000021612)	ENSCGOG00000021608
Channel bull blenny	MODERN SPECIES	16	ripply2 (ENSCGOG00000024661)	SIM1 (ENSCGOG00000024662)	GRIK2 (ENSCGOG00000024687)	lin28b (ENSCGOG00000024703)	prep (ENSCGOG00000024704)	ENSCGOG00000024705	xkr5a (ENSCGOG00000024706)	tram2 (ENSCGOG00000024708)	efhc1 (ENSCGOG00000024709)	ENSCGOG00000024710	mrpl19 (ENSCGOG00000024711)	mycn (ENSCGOG00000024712)	smek1 (ENSCGOG00000002846)	ENSCGOG00000003736	paplnb (ENSCGOG00000003759)	PLEKHG1 (ENSCGOG00000003765) #22	tcp1 (ENSCGOG00000003796)	acat2 (ENSCGOG00000004647)	wtap (ENSCGOG00000004978)	sod2 (ENSCGOG00000005042)	FNDC1 (ENSCGOG00000005216)	otofa (ENSCGOG00000005248)	drc1 (ENSCGOG00000005935)	ENSCGOG00000005938	nr2e1 (ENSCGOG00000005949)	snx3 (ENSCGOG00000005941)	afg1lb (ENSCGOG00000005998)	foxo3b (ENSCGOG00000006004)	ARMC2 (ENSCGOG00000006007)	sesn1 (ENSCGOG00000006017)	cep57l1 (ENSCGOG00000006019)
Eupecaria_C	ANCESTRAL SPECIES	16	ENSGT00940000156143.a.b	ENSGT00390000008152.A	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00390000000663	ENSGT00950000183168.B.b	ENSGT00530000063695.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	11	ENSGT00940000156143.a.b	ENSGT00390000008152.A	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00390000000663	ENSGT00950000183168.B.b	ENSGT00530000063695.b
European seabass	MODERN SPECIES	7	mrap2b (ENSDLAG00005031700)	ripply2 (ENSDLAG00005016820)	ENSDLAG00005016828	ENSDLAG00005005046	ENSDLAG00005016885	ENSDLAG00005027424	ENSDLAG00005018660	xkr5a (ENSDLAG00005029326)	efhc1 (ENSDLAG00005018822)	ENSDLAG00005028887	ENSDLAG00005018839	mycn (ENSDLAG00005026718)	ENSDLAG00005018898	ENSDLAG00005027281	paplnb (ENSDLAG00005030947)	ENSDLAG00005019041 #22	TCP1 (ENSDLAG00005019069)	acat2 (ENSDLAG00005019106)	wtap (ENSDLAG00005019235)	sod2 (ENSDLAG00005019276)	FNDC1 (ENSDLAG00005019303)	otofa (ENSDLAG00005019390)	ENSDLAG00005020122	OSTM1 (ENSDLAG00005020161)	nr2e1 (ENSDLAG00005020195)	snx3 (ENSDLAG00005029627)	afg1lb (ENSDLAG00005020306)	foxo3b (ENSDLAG00005020324)	ARMC2 (ENSDLAG00005020331)	sesn1 (ENSDLAG00005020385)	cep57l1 (ENSDLAG00005034480)
Large yellow croaker	MODERN SPECIES	482	ENSLCRG00005004997	GRIK2 (ENSLCRG00005005010)	lin28b (ENSLCRG00005006382)	prep (ENSLCRG00005006387)	ENSLCRG00005006593	xkr5a (ENSLCRG00005006598)	tram2 (ENSLCRG00005006604)	efhc1 (ENSLCRG00005007099)	ENSLCRG00005007101	mrpl19 (ENSLCRG00005007103)	mycn (ENSLCRG00005007105)	smek1 (ENSLCRG00005007143)	ENSLCRG00005007166	ENSLCRG00005007167	paplnb (ENSLCRG00005007170)	PLEKHG1 (ENSLCRG00005007177) #22	tcp1 (ENSLCRG00005007185)	acat2 (ENSLCRG00005007190)	wtap (ENSLCRG00005007191)	sod2 (ENSLCRG00005007192)	FNDC1 (ENSLCRG00005007194)	otofa (ENSLCRG00005007205)	drc1 (ENSLCRG00005007721)	OSTM1 (ENSLCRG00005007722)	nr2e1 (ENSLCRG00005007723)	snx3 (ENSLCRG00005007729)	afg1lb (ENSLCRG00005007731)	foxo3b (ENSLCRG00005007732)	ARMC2 (ENSLCRG00005007733)	sesn1 (ENSLCRG00005007734)	cep57l1 (ENSLCRG00005007735)
Gilthead seabream	MODERN SPECIES	14	SIM1 (ENSSAUG00010015487)	ENSSAUG00010015520	GRIK2 (ENSSAUG00010015544)	lin28b (ENSSAUG00010015808)	prep (ENSSAUG00010015819)	ENSSAUG00010015854	xkr5a (ENSSAUG00010015857)	tram2 (ENSSAUG00010015861)	efhc1 (ENSSAUG00010015930)	ENSSAUG00010015932	mrpl19 (ENSSAUG00010015939)	mycn (ENSSAUG00010015944)	smek1 (ENSSAUG00010015958)	ERH (ENSSAUG00010016632)	paplnb (ENSSAUG00010016633)	PLEKHG1 (ENSSAUG00010016638) #22	tcp1 (ENSSAUG00010008729)	acat2 (ENSSAUG00010008737)	wtap (ENSSAUG00010009317)	sod2 (ENSSAUG00010009320)	FNDC1 (ENSSAUG00010009326)	otofa (ENSSAUG00010009331)	drc1 (ENSSAUG00010009552)	OSTM1 (ENSSAUG00010009560)	nr2e1 (ENSSAUG00010009563)	snx3 (ENSSAUG00010009568)	afg1lb (ENSSAUG00010009573)	foxo3b (ENSSAUG00010009595)	ARMC2 (ENSSAUG00010009600)	sesn1 (ENSSAUG00010009605)	cep57l1 (ENSSAUG00010009608)
Ovalentaria	ANCESTRAL SPECIES	19	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000180091	ENSGT00940000154096.b.b.a	ENSGT00940000178209	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000173939	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.C	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00940000178331	ENSGT00390000000663
Ovalentaria_B	ANCESTRAL SPECIES	17	ENSGT00390000008152.A	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00940000178209	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00940000178331	ENSGT00390000000663	ENSGT00950000183168.B.b
Pomacentridae	ANCESTRAL SPECIES	34	ENSGT00390000008152.A	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00940000178209	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B
Pomacentridae_A	ANCESTRAL SPECIES	26	ENSGT00390000008152.A	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00940000178209	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00390000016097.c	ENSGT00390000011890	ENSGT00940000157624.a	ENSGT00940000153635.B	ENSGT00900000141110	ENSGT00390000003855.b.e.b	ENSGT00940000167177	ENSGT00950000183147.A.a.g.b	ENSGT00390000007874
Amphiprion	ANCESTRAL SPECIES	55	ENSGT00390000008152.A	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00940000178209	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00390000016097.c	ENSGT00390000011890	ENSGT00940000157624.a	ENSGT00940000153635.B	ENSGT00900000141110	ENSGT00390000003855.b.e.b	ENSGT00940000167177	ENSGT00950000183147.A.a.g.b	ENSGT00390000007874
Clown anemonefish	MODERN SPECIES	1408													smek1 (ENSAOCG00000011257)	ERH (ENSAOCG00000011284)	paplnb (ENSAOCG00000011325)	ENSAOCG00000011356 #22	tcp1 (ENSAOCG00000011419)	acat2 (ENSAOCG00000011461)	wtap (ENSAOCG00000011495)	sod2 (ENSAOCG00000011525)	FNDC1 (ENSAOCG00000011580)	otofa (ENSAOCG00000011718)	ZFYVE1 (ENSAOCG00000011802)	pigh (ENSAOCG00000011836)
Orange clownfish	MODERN SPECIES	2	ENSAPEG00000022031	xkr5a (ENSAPEG00000022044)	ENSAPEG00000022072	prep (ENSAPEG00000022083)	ENSAPEG00000022096	xkr5a (ENSAPEG00000022118)	tram2 (ENSAPEG00000022143)	efhc1 (ENSAPEG00000022192)	ENSAPEG00000022427	ENSAPEG00000022432	mrpl19 (ENSAPEG00000022446)	mycn (ENSAPEG00000022477)	smek1 (ENSAPEG00000022492)	ERH (ENSAPEG00000022577)	paplnb (ENSAPEG00000022586)	ENSAPEG00000022606 #22	tcp1 (ENSAPEG00000022617)	acat2 (ENSAPEG00000022680)	wtap (ENSAPEG00000022698)	sod2 (ENSAPEG00000022721)	ENSAPEG00000022735	otofa (ENSAPEG00000022763)	ZFYVE1 (ENSAPEG00000022833)	pigh (ENSAPEG00000022860)	rhov (ENSAPEG00000022872)	vps18 (ENSAPEG00000022883)	ino80 (ENSAPEG00000022911)	chac1 (ENSAPEG00000022979)	dll4 (ENSAPEG00000023015)	syndig1l (ENSAPEG00000023081)	vrtn (ENSAPEG00000023134)
Spiny chromis	MODERN SPECIES	1220																PLEKHG1 (ENSAPOG00000004322) #22	tcp1 (ENSAPOG00000004288)	acat2 (ENSAPOG00000004232)	wtap (ENSAPOG00000004201)	sod2 (ENSAPOG00000004182)	FNDC1 (ENSAPOG00000004149)
Bicolor damselfish	MODERN SPECIES	1325																PLEKHG1 (ENSSPAG00000011477) #22	tcp1 (ENSSPAG00000011506)	acat2 (ENSSPAG00000011575)	wtap (ENSSPAG00000011600)	sod2 (ENSSPAG00000011621)	FNDC1 (ENSSPAG00000011652)	otofa (ENSSPAG00000011816)
Cichlidae	ANCESTRAL SPECIES	12	ENSGT00390000008152.A	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00940000178209	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00940000178331	ENSGT00390000000663	ENSGT00950000183168.B.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	6	ENSGT00940000156143.a.b	ENSGT00390000008152.A	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00940000178331	ENSGT00390000000663	ENSGT00950000183168.B.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	3	ENSGT00940000156143.a.b	ENSGT00390000008152.A	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00940000178331	ENSGT00390000000663	ENSGT00950000183168.B.b
Lyretail cichlid	MODERN SPECIES	314	sim1a (ENSNBRG00000020202)	ENSNBRG00000020165	GRIK2 (ENSNBRG00000020131)	lin28b (ENSNBRG00000020118)	prep (ENSNBRG00000020096)	ENSNBRG00000020082	xkr5a (ENSNBRG00000020053)	tram2 (ENSNBRG00000020036)	efhc1 (ENSNBRG00000019997)	ENSNBRG00000019983	mrpl19 (ENSNBRG00000019970)	mycn (ENSNBRG00000019959)	smek1 (ENSNBRG00000019921)	ENSNBRG00000019894	paplnb (ENSNBRG00000019859)	ENSNBRG00000019846 #22	tcp1 (ENSNBRG00000019787)	acat2 (ENSNBRG00000019737)	wtap (ENSNBRG00000019705)	sod2 (ENSNBRG00000019677)	ENSNBRG00000019660	ENSNBRG00000019648	ENSNBRG00000019637	otofa (ENSNBRG00000019524)	ENSNBRG00000019483	OSTM1 (ENSNBRG00000019471)	nr2e1 (ENSNBRG00000019443)	snx3 (ENSNBRG00000019406)	afg1lb (ENSNBRG00000019375)	foxo3b (ENSNBRG00000019364)	ARMC2 (ENSNBRG00000019334)
Haplochromini	ANCESTRAL SPECIES	13	ENSGT00940000156143.a.b	ENSGT00390000008152.A	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00940000178331	ENSGT00390000000663	ENSGT00950000183168.B.b
Burton s mouthbrooder	MODERN SPECIES	312	SIM1 (ENSHBUG00000014296)	ENSHBUG00000014245	GRIK2 (ENSHBUG00000014232)	lin28b (ENSHBUG00000014195)	prep (ENSHBUG00000014169)	ENSHBUG00000014127	xkr5a (ENSHBUG00000014101)	tram2 (ENSHBUG00000014095)	efhc1 (ENSHBUG00000014062)	ENSHBUG00000014054	mrpl19 (ENSHBUG00000014044)	mycn (ENSHBUG00000014040)	smek1 (ENSHBUG00000014012)	ENSHBUG00000013942	paplnb (ENSHBUG00000013931)	PLEKHG1 (ENSHBUG00000013918) #22	tcp1 (ENSHBUG00000013899)	acat2 (ENSHBUG00000013808)	wtap (ENSHBUG00000001138)	sod2 (ENSHBUG00000013750)	FNDC1 (ENSHBUG00000013724)	ENSHBUG00000013701	otofa (ENSHBUG00000013680)	drc1 (ENSHBUG00000013557)	OSTM1 (ENSHBUG00000013547)	nr2e1 (ENSHBUG00000013534)	snx3 (ENSHBUG00000013497)	afg1lb (ENSHBUG00000013479)	foxo3b (ENSHBUG00000000399)	ARMC2 (ENSHBUG00000000398)	sesn1 (ENSHBUG00000013443)
Haplochromini_A	ANCESTRAL SPECIES	11	ENSGT00940000156143.a.b	ENSGT00390000008152.A	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00940000178331	ENSGT00390000000663	ENSGT00950000183168.B.b
Haplochromini_B	ANCESTRAL SPECIES	34	ENSGT00940000156143.a.b	ENSGT00390000008152.A	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT01100000263664.b.b	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00390000000663	ENSGT00950000183168.B.b
Eastern happy	MODERN SPECIES	6	SIM1 (ENSACLG00000021729)	ENSACLG00000021702	ENSACLG00000021584	lin28b (ENSACLG00000021564)	prep (ENSACLG00000021516)	ENSACLG00000021497	xkr5a (ENSACLG00000021490)	tram2 (ENSACLG00000021448)	efhc1 (ENSACLG00000021421)	ENSACLG00000021389	mrpl19 (ENSACLG00000021351)	mycn (ENSACLG00000021336)	smek1 (ENSACLG00000021261)	ENSACLG00000021247	paplnb (ENSACLG00000021209)	PLEKHG1 (ENSACLG00000021076) #22	tcp1 (ENSACLG00000020965)	acat2 (ENSACLG00000020918)	wtap (ENSACLG00000020899)	sod2 (ENSACLG00000020876)	ENSACLG00000020862	ENSACLG00000020851	FNDC1 (ENSACLG00000020762)	otofa (ENSACLG00000020643)	ENSACLG00000020606	OSTM1 (ENSACLG00000020598)	nr2e1 (ENSACLG00000020548)	snx3 (ENSACLG00000020523)	afg1lb (ENSACLG00000020466)	foxo3b (ENSACLG00000020458)	ARMC2 (ENSACLG00000020440)
Zebra mbuna	MODERN SPECIES	1097	SIM1 (ENSMZEG00005018193)	ENSMZEG00005018185	ENSMZEG00005018179	lin28b (ENSMZEG00005018178)	prep (ENSMZEG00005018171)	ENSMZEG00005018167	xkr5a (ENSMZEG00005018164)	tram2 (ENSMZEG00005018161)	efhc1 (ENSMZEG00005018159)	ENSMZEG00005018157	mrpl19 (ENSMZEG00005018154)	mycn (ENSMZEG00005018153)	smek1 (ENSMZEG00005018149)	ENSMZEG00005018146	paplnb (ENSMZEG00005018145)	PLEKHG1 (ENSMZEG00005018138) #22	tcp1 (ENSMZEG00005018125)	acat2 (ENSMZEG00005018127)	wtap (ENSMZEG00005018121)	sod2 (ENSMZEG00005018119)	ENSMZEG00005018117	FNDC1 (ENSMZEG00005018113)	otofa (ENSMZEG00005018102)	ENSMZEG00005018096	OSTM1 (ENSMZEG00005018095)	nr2e1 (ENSMZEG00005018093)	snx3 (ENSMZEG00005018091)	afg1lb (ENSMZEG00005018089)	foxo3b (ENSMZEG00005018088)	ENSMZEG00005018086	ENSMZEG00005018083
P. nyererei	MODERN SPECIES	336	sim1a (ENSPNYG00000022633)	ENSPNYG00000022610	ENSPNYG00000022594	lin28b (ENSPNYG00000022590)	prep (ENSPNYG00000022582)	ENSPNYG00000022569	xkr5a (ENSPNYG00000022559)	tram2 (ENSPNYG00000022540)	efhc1 (ENSPNYG00000022525)	ENSPNYG00000022518	mrpl19 (ENSPNYG00000022512)	mycn (ENSPNYG00000022509)	smek1 (ENSPNYG00000022476)	ENSPNYG00000022461	paplnb (ENSPNYG00000022451)	ENSPNYG00000022442 #22	ENSPNYG00000022434	tcp1 (ENSPNYG00000022378)	acat2 (ENSPNYG00000022364)	wtap (ENSPNYG00000022353)	sod2 (ENSPNYG00000022342)	ENSPNYG00000022334	ENSPNYG00000022331	otofa (ENSPNYG00000022307)	drc1 (ENSPNYG00000022285)	OSTM1 (ENSPNYG00000022269)	nr2e1 (ENSPNYG00000022258)	snx3 (ENSPNYG00000022249)	afg1lb (ENSPNYG00000022230)	foxo3b (ENSPNYG00000022219)	ENSPNYG00000022211
Nile tilapia	MODERN SPECIES	6	ENSONIG00000014699	ENSONIG00000028237	GRIK2 (ENSONIG00000014701)	lin28b (ENSONIG00000014706)	prep (ENSONIG00000014707)	ENSONIG00000014709	xkr5a (ENSONIG00000014716)	tram2 (ENSONIG00000014718)	efhc1 (ENSONIG00000014725)	ENSONIG00000014730	mrpl19 (ENSONIG00000014731)	mycn (ENSONIG00000014735)	smek1 (ENSONIG00000014737)	ENSONIG00000027132	paplnb (ENSONIG00000014740)	PLEKHG1 (ENSONIG00000013238) #22	tcp1 (ENSONIG00000013244)	acat2 (ENSONIG00000013255)	wtap (ENSONIG00000013259)	sod2 (ENSONIG00000013263)	FNDC1 (ENSONIG00000013266)	otofa (ENSONIG00000013269)	ENSONIG00000013276	OSTM1 (ENSONIG00000013278)	nr2e1 (ENSONIG00000013281)	snx3 (ENSONIG00000013287)	afg1lb (ENSONIG00000013289)	foxo3b (ENSONIG00000013292)	ARMC2 (ENSONIG00000013293)	sesn1 (ENSONIG00000013301)	cep57l1 (ENSONIG00000013303)
Midas cichlid	MODERN SPECIES	271	ENSACIG00000009873	GRIK2 (ENSACIG00000009831)	lin28b (ENSACIG00000009818)	prep (ENSACIG00000009776)	ENSACIG00000009747	xkr5a (ENSACIG00000009725)	tram2 (ENSACIG00000009677)	efhc1 (ENSACIG00000009608)	ENSACIG00000009591	ENSACIG00000009580	mrpl19 (ENSACIG00000009562)	mycn (ENSACIG00000009541)	smek1 (ENSACIG00000009497)	ENSACIG00000009424	paplnb (ENSACIG00000009378)	ENSACIG00000009358 #22	tcp1 (ENSACIG00000009317)	acat2 (ENSACIG00000009288)	wtap (ENSACIG00000009155)	sod2 (ENSACIG00000009132)	FNDC1 (ENSACIG00000008997)	otofa (ENSACIG00000008893)	ENSACIG00000008830	OSTM1 (ENSACIG00000008805)	nr2e1 (ENSACIG00000008784)	snx3 (ENSACIG00000008723)	afg1lb (ENSACIG00000008668)	foxo3b (ENSACIG00000008588)	ARMC2 (ENSACIG00000008500)	sesn1 (ENSACIG00000008468)	cep57l1 (ENSACIG00000008438)
Atherinomorphae	ANCESTRAL SPECIES	18	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000180091	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000173939	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.C	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00940000176160	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00940000178331
Oryzias	ANCESTRAL SPECIES	19	ENSGT00940000156143.a.b	ENSGT00390000008152.A.g.a	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b.e	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000176160	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00390000000663	ENSGT00950000183168.B.b	ENSGT00390000002143.b.a
Oryzias_b	ANCESTRAL SPECIES	17	ENSGT00940000156143.a.b	ENSGT00390000008152.A.g.a	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b.e	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000176160	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00390000000663	ENSGT00950000183168.B.b	ENSGT00390000002143.b.a
Indian medaka	MODERN SPECIES	22	ENSOMEG00000006337	GRIK2 (ENSOMEG00000006383)	lin28b (ENSOMEG00000006425)	prep (ENSOMEG00000006468)	ENSOMEG00000006502	xkr5a (ENSOMEG00000006544)	tram2 (ENSOMEG00000006582)	efhc1 (ENSOMEG00000006600)	ENSOMEG00000006632	mrpl19 (ENSOMEG00000006661)	mycn (ENSOMEG00000000785)	smek1 (ENSOMEG00000006704)	ERH (ENSOMEG00000006713)	ENSOMEG00000006737	paplnb (ENSOMEG00000006760)	PLEKHG1 (ENSOMEG00000006809) #22	tcp1 (ENSOMEG00000006853)	acat2 (ENSOMEG00000006874)	wtap (ENSOMEG00000006907)	sod2 (ENSOMEG00000006930)	FNDC1 (ENSOMEG00000007225)	otofa (ENSOMEG00000007326)	ENSOMEG00000007358	OSTM1 (ENSOMEG00000007371)	nr2e1 (ENSOMEG00000007396)	snx3 (ENSOMEG00000007412)	afg1lb (ENSOMEG00000007445)	foxo3b (ENSOMEG00000007462)	ENSOMEG00000007473	sesn1 (ENSOMEG00000007536)	EFR3B (ENSOMEG00000007711)
Javanese ricefish	MODERN SPECIES	16	sim1a (ENSOJAG00000022574)	ENSOJAG00000022584	GRIK2 (ENSOJAG00000022652)	lin28b (ENSOJAG00000023134)	prep (ENSOJAG00000023160)	ENSOJAG00000023216	xkr5a (ENSOJAG00000023230)	tram2 (ENSOJAG00000023245)	efhc1 (ENSOJAG00000023264)	ENSOJAG00000023270	mrpl19 (ENSOJAG00000023277)	mycn (ENSOJAG00000023283)	smek1 (ENSOJAG00000023298)	ERH (ENSOJAG00000023329)	paplnb (ENSOJAG00000023337)	PLEKHG1 (ENSOJAG00000023344) #22	ENSOJAG00000015416	tcp1 (ENSOJAG00000015426)	acat2 (ENSOJAG00000015488)	wtap (ENSOJAG00000015544)	sod2 (ENSOJAG00000015572)	ENSOJAG00000015626	otofa (ENSOJAG00000015846)	ENSOJAG00000016316	OSTM1 (ENSOJAG00000016324)	nr2e1 (ENSOJAG00000016346)	snx3 (ENSOJAG00000016432)	afg1lb (ENSOJAG00000016467)	foxo3b (ENSOJAG00000016575)	ARMC2 (ENSOJAG00000016586)	sesn1 (ENSOJAG00000016607)
Oryzias_a	ANCESTRAL SPECIES	13	ENSGT00940000156143.a.b	ENSGT00390000008152.A.g.a	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b.e	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000176160	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00390000000663	ENSGT00950000183168.B.b	ENSGT00390000002143.b.a
Japanese Medaka HdrR	MODERN SPECIES	16	ENSORLG00000012851	sim1a (ENSORLG00000012840)	GRIK2 (ENSORLG00000012884)	lin28b (ENSORLG00000012891)	prep (ENSORLG00000012934)	prdm1c (ENSORLG00000012948)	xkr5a (ENSORLG00000012952)	tram2 (ENSORLG00000012971)	efhc1 (ENSORLG00000012981)	ENSORLG00000013000	mrpl19 (ENSORLG00000013027)	mycn (ENSORLG00000022362)	smek1 (ENSORLG00000013092)	ERH (ENSORLG00000028815)	paplnb (ENSORLG00000013108)	PLEKHG1 (ENSORLG00000013150) #22	tcp1 (ENSORLG00000013195)	acat2 (ENSORLG00000013226)	wtap (ENSORLG00000013240)	sod2 (ENSORLG00000013261)	FNDC1 (ENSORLG00000013281)	otofa (ENSORLG00000013388)	ENSORLG00000026052	OSTM1 (ENSORLG00000013403)	nr2e1 (ENSORLG00000013426)	snx3 (ENSORLG00000013433)	afg1lb (ENSORLG00000013445)	foxo3b (ENSORLG00000013450)	ARMC2 (ENSORLG00000013466)	sesn1 (ENSORLG00000013484)	EFR3B (ENSORLG00000013543)
Chinese medaka	MODERN SPECIES	676	mrap2b (ENSOSIG00000011116)	sim1a (ENSOSIG00000011103)	ENSOSIG00000011102	GRIK2 (ENSOSIG00000010901)	lin28b (ENSOSIG00000010898)	prep (ENSOSIG00000010859)	ENSOSIG00000010856	xkr5a (ENSOSIG00000010855)	tram2 (ENSOSIG00000010193)	ENSOSIG00000010174	mrpl19 (ENSOSIG00000010172)	mycn (ENSOSIG00000010146)	smek1 (ENSOSIG00000010125)	ERH (ENSOSIG00000010121)	paplnb (ENSOSIG00000010119)	PLEKHG1 (ENSOSIG00000010105) #22	tcp1 (ENSOSIG00000010100)	wtap (ENSOSIG00000010092)	sod2 (ENSOSIG00000010013)	FNDC1 (ENSOSIG00000010001)	otofa (ENSOSIG00000009904)	OSTM1 (ENSOSIG00000009900)	nr2e1 (ENSOSIG00000009896)	snx3 (ENSOSIG00000009893)	afg1lb (ENSOSIG00000009890)	foxo3b (ENSOSIG00000009889)	ENSOSIG00000009887	ARMC2 (ENSOSIG00000009885)	sesn1 (ENSOSIG00000009546)	EFR3B (ENSOSIG00000009515)	ENSOSIG00000009514
Cyprinodontiformes	ANCESTRAL SPECIES	14	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000180091	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000173939	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.C	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00940000178331	ENSGT00390000000663
Cyprinodontoidei	ANCESTRAL SPECIES	12	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000180091	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000173939	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.C	ENSGT00940000155086.B	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00940000178331	ENSGT00390000000663	ENSGT00950000183168.B.b
Poeciliinae	ANCESTRAL SPECIES	15	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000180091	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000173939	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00940000178331	ENSGT00390000000663	ENSGT00950000183168.B.b	ENSGT00530000063695.b
Poecilia	ANCESTRAL SPECIES	9	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000180091	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000173939	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00940000178331	ENSGT00390000000663	ENSGT00950000183168.B.b	ENSGT00530000063695.b
NAME_6	ANCESTRAL SPECIES	2	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000180091	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000173939	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00390000000663	ENSGT00950000183168.B.b	ENSGT00530000063695.b	ENSGT00530000063929.a.b
Amazon molly	MODERN SPECIES	253	lin28b (ENSPFOG00000019352)	prep (ENSPFOG00000019358)	ENSPFOG00000019374	xkr5a (ENSPFOG00000019377)	tram2 (ENSPFOG00000019383)	efhc1 (ENSPFOG00000019386)	ENSPFOG00000019390	mrpl19 (ENSPFOG00000019392)	ENSPFOG00000022923	mycn (ENSPFOG00000019393)	ENSPFOG00000019396	smek1 (ENSPFOG00000019400)	ENSPFOG00000019405	paplnb (ENSPFOG00000019407)	ENSPFOG00000020614	PLEKHG1 (ENSPFOG00000019410) #22	tcp1 (ENSPFOG00000019417)	acat2 (ENSPFOG00000019421)	wtap (ENSPFOG00000019425)	sod2 (ENSPFOG00000019429)	FNDC1 (ENSPFOG00000019433)	otofa (ENSPFOG00000019457)	otofa (ENSPFOG00000019508)	OSTM1 (ENSPFOG00000019529)	nr2e1 (ENSPFOG00000019532)	snx3 (ENSPFOG00000019534)	afg1lb (ENSPFOG00000019535)	foxo3b (ENSPFOG00000019537)	ARMC2 (ENSPFOG00000019538)	sesn1 (ENSPFOG00000019540)	cep57l1 (ENSPFOG00000019541)
Sailfin molly	MODERN SPECIES	3294																PLEKHG1 (ENSPLAG00000002329) #22
Guppy	MODERN SPECIES	452	ENSPREG00000006258	ENSPREG00000006240	GRIK2 (ENSPREG00000006189)	lin28b (ENSPREG00000006170)	prep (ENSPREG00000006132)	ENSPREG00000006060	xkr5a (ENSPREG00000006029)	tram2 (ENSPREG00000005990)	efhc1 (ENSPREG00000005975)	ENSPREG00000005957	mrpl19 (ENSPREG00000005939)	mycn (ENSPREG00000005916)	smek1 (ENSPREG00000005878)	ERH (ENSPREG00000005785)	paplnb (ENSPREG00000005755)	ENSPREG00000005734 #22	tcp1 (ENSPREG00000005703)	acat2 (ENSPREG00000005675)	wtap (ENSPREG00000005555)	sod2 (ENSPREG00000005529)	FNDC1 (ENSPREG00000005423)	otofa (ENSPREG00000005299)	OSTM1 (ENSPREG00000005263)	nr2e1 (ENSPREG00000005235)	snx3 (ENSPREG00000005216)	afg1lb (ENSPREG00000005157)	foxo3b (ENSPREG00000005040)	ENSPREG00000005022	ARMC2 (ENSPREG00000004984)	sesn1 (ENSPREG00000004835)	cep57l1 (ENSPREG00000004797)
Platyfish	MODERN SPECIES	6	ENSXMAG00000003517	ENSXMAG00000021597	GRIK2 (ENSXMAG00000003453)	lin28b (ENSXMAG00000003450)	prep (ENSXMAG00000003424)	ENSXMAG00000003417	xkr5a (ENSXMAG00000003413)	tram2 (ENSXMAG00000003399)	efhc1 (ENSXMAG00000003396)	ENSXMAG00000021325	mrpl19 (ENSXMAG00000003388)	mycn (ENSXMAG00000003386)	smek1 (ENSXMAG00000003375)	ENSXMAG00000029136	paplnb (ENSXMAG00000003371)	PLEKHG1 (ENSXMAG00000003360) #22	tcp1 (ENSXMAG00000003351)	acat2 (ENSXMAG00000003334)	wtap (ENSXMAG00000003331)	sod2 (ENSXMAG00000003325)	FNDC1 (ENSXMAG00000003322)	otofa (ENSXMAG00000003300)	OSTM1 (ENSXMAG00000029145)	nr2e1 (ENSXMAG00000003283)	snx3 (ENSXMAG00000003281)	afg1lb (ENSXMAG00000003272)	foxo3 (ENSXMAG00000003269)	ARMC2 (ENSXMAG00000003268)	sesn1 (ENSXMAG00000028518)	cep57l1 (ENSXMAG00000003254)	cd164 (ENSXMAG00000022598)
NAME_4	ANCESTRAL SPECIES	8	ENSGT00390000008152.A.g.b	ENSGT00390000008152.A.g.a	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.C	ENSGT00940000155086.B	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00390000000663	ENSGT00950000183168.B.b	ENSGT00530000063695.b
Mummichog	MODERN SPECIES	2240		ENSFHEG00000022522	GRIK2 (ENSFHEG00000022564)	lin28b (ENSFHEG00000022590)	prep (ENSFHEG00000022636)	ENSFHEG00000022651	xkr5a (ENSFHEG00000022661)	tram2 (ENSFHEG00000022697)	efhc1 (ENSFHEG00000022840)	ENSFHEG00000022847	mrpl19 (ENSFHEG00000022887)	mycn (ENSFHEG00000022918)	smek1 (ENSFHEG00000022980)	ERH (ENSFHEG00000022994)	paplnb (ENSFHEG00000023004)	PLEKHG1 (ENSFHEG00000023038) #22	tcp1 (ENSFHEG00000023109)	acat2 (ENSFHEG00000023174)	wtap (ENSFHEG00000023365)	sod2 (ENSFHEG00000023363)	FNDC1 (ENSFHEG00000023360)	ENSFHEG00000023354	ENSFHEG00000023352	OSTM1 (ENSFHEG00000023349)	nr2e1 (ENSFHEG00000023345)	snx3 (ENSFHEG00000023342)	afg1lb (ENSFHEG00000023340)	foxo3b (ENSFHEG00000023338)	ARMC2 (ENSFHEG00000023335)	sesn1 (ENSFHEG00000023330)	cep57l1 (ENSFHEG00000023326)
Sheepshead minnow	MODERN SPECIES	150	ENSCVAG00000001894	ENSCVAG00000001891	GRIK2 (ENSCVAG00000001886)	lin28b (ENSCVAG00000001868)	prep (ENSCVAG00000001865)	ENSCVAG00000001859	xkr5a (ENSCVAG00000001852)	tram2 (ENSCVAG00000001838)	ENSCVAG00000001824	ENSCVAG00000001822	mrpl19 (ENSCVAG00000001815)	mycn (ENSCVAG00000001807)	smek1 (ENSCVAG00000001802)	ENSCVAG00000001791	paplnb (ENSCVAG00000001786)	PLEKHG1 (ENSCVAG00000001777) #22	tcp1 (ENSCVAG00000001769)	acat2 (ENSCVAG00000001762)	wtap (ENSCVAG00000001753)	sod2 (ENSCVAG00000001748)	ENSCVAG00000001745	otofa (ENSCVAG00000001740)	OSTM1 (ENSCVAG00000001719)	nr2e1 (ENSCVAG00000001716)	snx3 (ENSCVAG00000001713)	afg1lb (ENSCVAG00000001709)	foxo3b (ENSCVAG00000001690)	ARMC2 (ENSCVAG00000001686)	sesn1 (ENSCVAG00000001679)	cep57l1 (ENSCVAG00000001671)	cd164 (ENSCVAG00000001666)
Aplocheiloidei	ANCESTRAL SPECIES	27	ENSGT00390000008152.A.h	ENSGT00390000008152.A.g.a	ENSGT00940000155610.o.a	ENSGT00940000153295.b	ENSGT00530000063426.b.b	ENSGT00940000154798.a.d.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000154096.b.b.a	ENSGT00390000009415	ENSGT00940000158432	ENSGT00390000018199.a	ENSGT00390000003316.c.a	ENSGT00940000156891.a.b	ENSGT00940000157723 #22	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B	ENSGT00940000155086.B	ENSGT00940000153804.A
Mangrove rivulus	MODERN SPECIES	20	ENSKMAG00000016463	ENSKMAG00000016448	GRIK2 (ENSKMAG00000016401)	lin28b (ENSKMAG00000016334)	prep (ENSKMAG00000016265)	ENSKMAG00000016247	xkr5a (ENSKMAG00000016226)	tram2 (ENSKMAG00000016177)	efhc1 (ENSKMAG00000016043)	ENSKMAG00000015994	mrpl19 (ENSKMAG00000015967)	mycn (ENSKMAG00000015950)	smek1 (ENSKMAG00000015917)	ERH (ENSKMAG00000015901)	paplnb (ENSKMAG00000015873)	PLEKHG1 (ENSKMAG00000015816) #22	tcp1 (ENSKMAG00000015727)	acat2 (ENSKMAG00000015691)	wtap (ENSKMAG00000015655)	sod2 (ENSKMAG00000015554)	FNDC1 (ENSKMAG00000015455)	otofa (ENSKMAG00000015305)	ENSKMAG00000015262
Turquoise killifish	DUPLICATION
Turquoise killifish	MODERN SPECIES	1613	ADAM17B (ENSNFUG00015003637)	cpsf3 (ENSNFUG00015003613)	ASAP2B (ENSNFUG00015003583)	allc (ENSNFUG00015003547)	cep43 (ENSNFUG00015003540)	ccr6a (ENSNFUG00015003538)	ENSNFUG00015003537	KIF26A (ENSNFUG00015003522)	ENSNFUG00015003515	ENSNFUG00015003509	ENSNFUG00015003502	myh6 (ENSNFUG00015003500)	pak6b (ENSNFUG00015003496)	spint1b (ENSNFUG00015003492)	ENSNFUG00015003482	PLEKHG3 (ENSNFUG00015003463) #22	Nfu_g_1_018754 (ENSNFUG00015003436)	ENSNFUG00015003422	MARK3 (ENSNFUG00015003315)	ENSNFUG00015003292	prph2lb (ENSNFUG00015003288)	cdc42bpb (ENSNFUG00015002882)	ckbb (ENSNFUG00015002742)	vipas39 (ENSNFUG00015002718)	ENSNFUG00015002705	ebna1bp2 (ENSNFUG00015002700)	ENSNFUG00015002689	HIVEP2 (ENSNFUG00015002681)	AIG1 (ENSNFUG00015002674)	ADAT2 (ENSNFUG00015002668)	pex3 (ENSNFUG00015002636)
Turquoise killifish	MODERN SPECIES	1613	lin28b (ENSNFUG00015012428)	ENSNFUG00015012425	prep (ENSNFUG00015012052)	ENSNFUG00015012027	Nfu_g_1_019020 (ENSNFUG00015012021)	tram2 (ENSNFUG00015011996)	ENSNFUG00015011982	EVA1A (ENSNFUG00015011976)	efhc1 (ENSNFUG00015011969)	MRPL19 (ENSNFUG00015011964)	mycn (ENSNFUG00015011955)	ENSNFUG00015011949	SMEK1 (ENSNFUG00015011795)	OLA.1317 (ENSNFUG00015011759)	paplnb (ENSNFUG00015011727)	PLEKHG1 (ENSNFUG00015011706) #22	TCP1 (ENSNFUG00015011663)	WTAP (ENSNFUG00015011580)	SOD2 (ENSNFUG00015011560)	FNDC1 (ENSNFUG00015011516)	ENSNFUG00015011506	otofa (ENSNFUG00015010570)	METTL24 (ENSNFUG00015010495)	CDC40 (ENSNFUG00015010408)	WASF1 (ENSNFUG00015010380)	CCDC167 (ENSNFUG00015010371)	GPR6 (ENSNFUG00015010365)	FIG4 (ENSNFUG00015009885)	ENSNFUG00015009830	ENSNFUG00015009793	TMEM18 (ENSNFUG00015009756)
Protacanthopterygii	DUPLICATION
Protacanthopterygii	DUPLICATION
Protacanthopterygii	ANCESTRAL SPECIES	22	ENSGT00530000063583.b	ENSGT00950000182962.b.b	ENSGT01060000248564.b.a.a.b	ENSGT00550000074943	ENSGT00740000115564	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000157723.q.a #22	ENSGT00550000074878	ENSGT00940000167949	ENSGT00950000182941.a.a.a.b	ENSGT01030000234626.B.ub	ENSGT00390000013931	ENSGT00390000011877	ENSGT00530000063558.B.k	ENSGT00940000155086.B	ENSGT00940000153804.A	ENSGT00940000155086.A	ENSGT00490000043329.a.b.g.a	ENSGT01030000234527.A.a.a.b.a	ENSGT00940000155459.x.b	ENSGT00940000153897.b.a.b	ENSGT00520000055578.a.b
Salmoninae	ANCESTRAL SPECIES	56	ENSGT00530000063583.b.a	ENSGT00950000182962.b.b.g.b	ENSGT01060000248564.b.a.a.b.c	ENSGT00550000074943	ENSGT00740000115564	ENSGT00940000159634	ENSGT00530000063929.a.b.d	ENSGT00530000063695.b	ENSGT00950000183168.B.b.a	ENSGT00940000161401.m.a.b	ENSGT00940000161401.m.a.a.a	ENSGT00390000013227.a.b	ENSGT00940000153609.b.db	ENSGT00940000156693.e	ENSGT00390000012341.c	ENSGT00940000157723.q.a #22	ENSGT00550000074878.ib.b	ENSGT01030000234626.B.ub	ENSGT00390000013931.m.b
Salmoninae_a	ANCESTRAL SPECIES	30	ENSGT00390000002881.fc.b	ENSGT00530000063583.b.a	ENSGT00950000182962.b.b.g.b	ENSGT01060000248564.b.a.a.b.c	ENSGT00550000074943	ENSGT00740000115564	ENSGT00940000159634	ENSGT00530000063929.a.b.d	ENSGT00530000063695.b	ENSGT00950000183168.B.b.a	ENSGT00940000161401.m.a.a.a	ENSGT00390000013227.a.b	ENSGT00940000153609.b.db	ENSGT00940000156693.e	ENSGT00390000012341.c	ENSGT00940000157723.q.a #22	ENSGT00550000074878.ib.b	ENSGT01030000234626.B.ub	ENSGT00390000013931.m.b	ENSGT00530000063558.B.l	ENSGT00940000166976	ENSGT00940000155086.B.e	ENSGT01100000263524.D.d.f	ENSGT01100000263524.C	ENSGT00390000011892.g.b	ENSGT00940000153311.a.b.b.f	ENSGT00390000001660.n	ENSGT00390000005318.b.b.a.j	ENSGT00520000055567.a.b	ENSGT00550000074694.b.n	ENSGT00940000158824.h
Salmo	ANCESTRAL SPECIES	12	ENSGT00390000002881.fc.b	ENSGT00530000063583.b.a	ENSGT00950000182962.b.b.g.b	ENSGT01060000248564.b.a.a.b.c	ENSGT00550000074943	ENSGT00740000115564	ENSGT00940000159634	ENSGT00530000063929.a.b.d	ENSGT00530000063695.b	ENSGT00950000183168.B.b.a	ENSGT00940000161401.m.a.b	ENSGT00390000013227.a.b	ENSGT00940000153609.b.db	ENSGT00940000156693.e	ENSGT00390000012341.c	ENSGT00940000157723.q.a #22	ENSGT00550000074878.ib.b	ENSGT01030000234626.B.ub	ENSGT00390000013931.m.b	ENSGT00530000063558.B.l	ENSGT00940000166976	ENSGT00940000155086.B.e	ENSGT01100000263524.D.d.f	ENSGT01100000263524.C	ENSGT00390000011892.g.b	ENSGT00940000153311.a.b.b.f	ENSGT00390000001660.n	ENSGT00390000005318.b.b.a.j	ENSGT00520000055567.a.b	ENSGT00550000074694.b.n	ENSGT00940000158824.h
River trout	MODERN SPECIES		cdc40 (ENSSTUG00000010936)	ENSSTUG00000010906	WASF1 (ENSSTUG00000010899)	GPR6 (ENSSTUG00000010892)	FIG4 (ENSSTUG00000010447)	AK9 (ENSSTUG00000010417)	ENSSTUG00000010407	ppil6 (ENSSTUG00000010282)	cep57l1 (ENSSTUG00000010265)	sesn1 (ENSSTUG00000010232)	foxo3b (ENSSTUG00000010224)	afg1lb (ENSSTUG00000010153)	snx3 (ENSSTUG00000010136)	nr2e1 (ENSSTUG00000010113)	OSTM1 (ENSSTUG00000010090)	PLEKHG1 (ENSSTUG00000010046) #22	tcp1 (ENSSTUG00000009987)	wtap (ENSSTUG00000009957)	ENSSTUG00000009949	ENSSTUG00000009942	ENSSTUG00000009933	otofa (ENSSTUG00000009472)	opn8a (ENSSTUG00000009409)	opn8b (ENSSTUG00000009391)	fkbp1b (ENSSTUG00000009384)	wdcp (ENSSTUG00000009376)	mfsd2b (ENSSTUG00000009325)	UBXN2A (ENSSTUG00000009297)	ATAD2B (ENSSTUG00000007738)	KLHL29 (ENSSTUG00000007394)	TRIB2 (ENSSTUG00000007379)
Atlantic salmon	MODERN SPECIES	25	cdc40 (ENSSSAG00000002396)	WASF1 (ENSSSAG00000009642)	FIG4 (ENSSSAG00000008552)	AK9 (ENSSSAG00000008446)	PPIL6 (ENSSSAG00000109308)	cd164 (ENSSSAG00000098472)	cep57l1 (ENSSSAG00000008398)	sesn1 (ENSSSAG00000008383)	foxo3b (ENSSSAG00000092355)	ENSSSAG00000109266	lace1 (ENSSSAG00000008348)	snx3 (ENSSSAG00000110792)	nr2e1 (ENSSSAG00000090271)	ENSSSAG00000114269	ostm1 (ENSSSAG00000008297)	plekhg1 (ENSSSAG00000008287) #22	TCPA (ENSSSAG00000008240)	acat2 (ENSSSAG00000096175)	wtap (ENSSSAG00000095056)	FNDC1 (ENSSSAG00000008223)	ENSSSAG00000091891	otofa (ENSSSAG00000061721)	opn8a (ENSSSAG00000062094)	opn8b (ENSSSAG00000101895)	mmut (ENSSSAG00000062142)	fkbp1b (ENSSSAG00000097867)	cssa06h2orf44 (ENSSSAG00000062468)	mfsd2b (ENSSSAG00000062498)	ubxn2a (ENSSSAG00000084988)	ENSSSAG00000118824	atad2b (ENSSSAG00000062770)
Oncorhynchus	ANCESTRAL SPECIES	30	ENSGT00390000002881.fc.b	ENSGT00530000063583.b.a	ENSGT00950000182962.b.b.g.b	ENSGT01060000248564.b.a.a.b.c	ENSGT00550000074943	ENSGT00740000115564	ENSGT00940000159634	ENSGT00530000063929.a.b.d	ENSGT00530000063695.b	ENSGT00950000183168.B.b.a	ENSGT00940000161401.m.a.a.a	ENSGT00390000013227.a.b	ENSGT00940000153609.b.db	ENSGT00940000156693.e	ENSGT00390000012341.c	ENSGT00940000157723.q.a #22	ENSGT00550000074878.ib.b	ENSGT01030000234626.B.ub	ENSGT00390000013931.m.b	ENSGT00530000063558.B.l	ENSGT00940000166976	ENSGT00940000155086.B.e	ENSGT01100000263524.D.d.f	ENSGT01100000263524.C	ENSGT00940000153311.a.b.b.f	ENSGT00390000001660.n	ENSGT00390000005318.b.b.a.j	ENSGT00520000055567.a.b	ENSGT00550000074694.b.n	ENSGT00940000158824.h	ENSGT00950000182986.a.b.a.g.b
Rainbow trout	MODERN SPECIES	25	WASF1 (ENSOMYG00000011354)	GPR6 (ENSOMYG00000063609)	FIG4 (ENSOMYG00000009720)	AK9 (ENSOMYG00000008741)	ENSOMYG00000069564	PPIL6 (ENSOMYG00000008614)	cd164 (ENSOMYG00000008587)	cep57l1 (ENSOMYG00000008571)	sesn1 (ENSOMYG00000008399)	foxo3b (ENSOMYG00000062959)	afg1lb (ENSOMYG00000019501)	snx3 (ENSOMYG00000019434)	nr2e1 (ENSOMYG00000019420)	OSTM1 (ENSOMYG00000019402)	ENSOMYG00000072136	ENSOMYG00000049071 #22	TCP1 (ENSOMYG00000019333)	acat2 (ENSOMYG00000019218)	wtap (ENSOMYG00000019164)	FNDC1 (ENSOMYG00000019136)	ENSOMYG00000070248	otofa (ENSOMYG00000029543)	opn8a (ENSOMYG00000060304)	opn8b (ENSOMYG00000029802)	fkbp1b (ENSOMYG00000029818)	wdcp (ENSOMYG00000029845)	mfsd2b (ENSOMYG00000029875)	UBXN2A (ENSOMYG00000029910)	ATAD2B (ENSOMYG00000030187)	ENSOMYG00000072966	ENSOMYG00000076604
Oncorhynchus_a	ANCESTRAL SPECIES	35	ENSGT00390000002881.fc.b	ENSGT00530000063583.b.a	ENSGT00950000182962.b.b.g.b	ENSGT01060000248564.b.a.a.b.c	ENSGT00550000074943	ENSGT00740000115564	ENSGT00940000159634	ENSGT00530000063929.a.b.d	ENSGT00530000063695.b	ENSGT00950000183168.B.b.a	ENSGT00940000161401.m.a.a.a	ENSGT00390000013227.a.b	ENSGT00940000153609.b.db	ENSGT00940000156693.e	ENSGT00390000012341.c	ENSGT00940000157723.q.a #22	ENSGT00550000074878.ib.b	ENSGT01030000234626.B.ub	ENSGT00390000013931.m.b	ENSGT00530000063558.B.l	ENSGT00940000166976	ENSGT00940000155086.B.e	ENSGT01100000263524.D.d.f	ENSGT01100000263524.C	ENSGT00940000153311.a.b.b.f	ENSGT00390000001660.n	ENSGT00390000005318.b.b.a.j	ENSGT00520000055567.a.b	ENSGT00550000074694.b.n	ENSGT00940000158824.h	ENSGT00950000182986.a.b.a.g.b
Coho salmon	MODERN SPECIES	13	cdc40 (ENSOKIG00005031045)	WASF1 (ENSOKIG00005031213)	GPR6 (ENSOKIG00005031232)	FIG4 (ENSOKIG00005031318)	AK9 (ENSOKIG00005032809)	ppil6 (ENSOKIG00005032863)	cd164 (ENSOKIG00005032898)	ENSOKIG00005032909	cep57l1 (ENSOKIG00005032917)	sesn1 (ENSOKIG00005032944)	foxo3b (ENSOKIG00005033024)	afg1lb (ENSOKIG00005033050)	snx3 (ENSOKIG00005033236)	nr2e1 (ENSOKIG00005033251)	OSTM1 (ENSOKIG00005033299)	PLEKHG1 (ENSOKIG00005033330) #22	tcp1 (ENSOKIG00005033362)	acat2 (ENSOKIG00005033499)	wtap (ENSOKIG00005033642)	ENSOKIG00005033712	ENSOKIG00005033737	otofa (ENSOKIG00005033769)	opn8a (ENSOKIG00005034318)	opn8b (ENSOKIG00005034393)	fkbp1b (ENSOKIG00005034435)	ENSOKIG00005034442	wdcp (ENSOKIG00005034446)	mfsd2b (ENSOKIG00005034453)	UBXN2A (ENSOKIG00005034497)	ATAD2B (ENSOKIG00005034612)	KLHL29 (ENSOKIG00005036875)
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	9	KLHL29 (ENSOTSG00005028746)	ATAD2B (ENSOTSG00005028204)	UBXN2A (ENSOTSG00005028195)	mfsd2b (ENSOTSG00005028192)	wdcp (ENSOTSG00005028189)	fkbp1b (ENSOTSG00005028184)	opn8b (ENSOTSG00005028182)	opn8a (ENSOTSG00005028167)	otofa (ENSOTSG00005027900)	ENSOTSG00005027894	foxo3b (ENSOTSG00005027893)	afg1lb (ENSOTSG00005027891)	snx3 (ENSOTSG00005027886)	nr2e1 (ENSOTSG00005027881)	OSTM1 (ENSOTSG00005027879)	ENSOTSG00005027877 #22	ENSOTSG00005027876 #22	tcp1 (ENSOTSG00005027849)	acat2 (ENSOTSG00005027838)	wtap (ENSOTSG00005027828)	ENSOTSG00005027826	ENSOTSG00005027823	METTL24 (ENSOTSG00005027822)	cdc40 (ENSOTSG00005026617)	ENSOTSG00005026615	FIG4 (ENSOTSG00005023974)	AK9 (ENSOTSG00005023967)	ppil6 (ENSOTSG00005023966)	cd164 (ENSOTSG00005023965)	cep57l1 (ENSOTSG00005023964)	sesn1 (ENSOTSG00005023962)
Chinook salmon	MODERN SPECIES	9	ATAD2B (ENSOTSG00005028204)	UBXN2A (ENSOTSG00005028195)	mfsd2b (ENSOTSG00005028192)	wdcp (ENSOTSG00005028189)	fkbp1b (ENSOTSG00005028184)	opn8b (ENSOTSG00005028182)	opn8a (ENSOTSG00005028167)	otofa (ENSOTSG00005027900)	ENSOTSG00005027894	foxo3b (ENSOTSG00005027893)	afg1lb (ENSOTSG00005027891)	snx3 (ENSOTSG00005027886)	nr2e1 (ENSOTSG00005027881)	OSTM1 (ENSOTSG00005027879)	ENSOTSG00005027877 #22	ENSOTSG00005027876 #22	tcp1 (ENSOTSG00005027849)	acat2 (ENSOTSG00005027838)	wtap (ENSOTSG00005027828)	ENSOTSG00005027826	ENSOTSG00005027823	METTL24 (ENSOTSG00005027822)	cdc40 (ENSOTSG00005026617)	ENSOTSG00005026615	FIG4 (ENSOTSG00005023974)	AK9 (ENSOTSG00005023967)	ppil6 (ENSOTSG00005023966)	cd164 (ENSOTSG00005023965)	cep57l1 (ENSOTSG00005023964)	sesn1 (ENSOTSG00005023962)	ENSOTSG00005023960
Huchen	MODERN SPECIES	3655																PLEKHG1 (ENSHHUG00000050243) #22	tcp1 (ENSHHUG00000050195)	acat2 (ENSHHUG00000050167)	wtap (ENSHHUG00000050140)
Northern pike	MODERN SPECIES	17	WASF1 (ENSELUG00000016757)	cdc40 (ENSELUG00000016837)	ENSELUG00000028462	METTL24 (ENSELUG00000016901)	slc22a16 (ENSELUG00000016920)	ppil6 (ENSELUG00000016932)	cd164 (ENSELUG00000016948)	cep57l1 (ENSELUG00000016989)	sesn1 (ENSELUG00000017036)	ARMC2 (ENSELUG00000017071)	foxo3b (ENSELUG00000017092)	afg1lb (ENSELUG00000017123)	snx3 (ENSELUG00000017150)	nr2e1 (ENSELUG00000017172)	OSTM1 (ENSELUG00000017212)	PLEKHG1 (ENSELUG00000017280) #22	tcp1 (ENSELUG00000017365)	acat2 (ENSELUG00000017338)	STX11 (ENSELUG00000017388)	stx11b.2 (ENSELUG00000017392)	mthfd1l (ENSELUG00000017415) #24	ENSELUG00000017427	zbtb2b (ENSELUG00000000662) #28	ENSELUG00000029127	armt1 (ENSELUG00000000664) #30	esr1 (ENSELUG00000000670) #32	ENSELUG00000027437	myct1a (ENSELUG00000032763) #34	serac1 (ENSELUG00000017822)	gtf2h5 (ENSELUG00000000724)	ENSELUG00000029928
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000157723.q.b #22
Salmoninae	ANCESTRAL SPECIES	831									ENSGT00530000063929.a.b.c	ENSGT00950000183168.B.b.b	ENSGT00390000000663	ENSGT00940000161401.m.b	ENSGT00940000153609.b.eb	ENSGT00940000156693.f	ENSGT00390000012341.d	ENSGT00940000157723.q.b #22	ENSGT00550000074878.ib.a
Salmoninae_a	ANCESTRAL SPECIES	23	ENSGT00510000048701.a.b	ENSGT00940000156778.l.b	ENSGT00530000063408.A.j	ENSGT00940000160723.w	ENSGT00390000002881.fc.a	ENSGT00530000063583.b.b	ENSGT00950000182962.b.b.g.a	ENSGT01060000248564.b.a.a.b.d	ENSGT00530000063929.a.b.c	ENSGT00950000183168.B.b.b	ENSGT00390000000663	ENSGT00940000161401.m.b	ENSGT00940000153609.b.eb	ENSGT00940000156693.f	ENSGT00390000012341.d	ENSGT00940000157723.q.b #22	ENSGT00550000074878.ib.a
Salmo	ANCESTRAL SPECIES	26	ENSGT00510000048701.a.b	ENSGT00940000156778.l.b	ENSGT00530000063408.A.j	ENSGT00940000160723.w	ENSGT00390000002881.fc.a	ENSGT00530000063583.b.b	ENSGT00950000182962.b.b.g.a	ENSGT01060000248564.b.a.a.b.d	ENSGT00530000063929.a.b.c	ENSGT00950000183168.B.b.b	ENSGT00390000000663	ENSGT00940000161401.m.b	ENSGT00940000153609.b.eb	ENSGT00940000156693.f	ENSGT00390000012341.d	ENSGT00940000157723.q.b #22
Atlantic salmon	MODERN SPECIES	6	ENSSSAG00000089359	ENSSSAG00000087570	cdc40 (ENSSSAG00000055003)	ENSSSAG00000084208	WASF1 (ENSSSAG00000055071)	ENSSSAG00000116979	ENSSSAG00000055094	cd164 (ENSSSAG00000083978)	sesn1 (ENSSSAG00000055139)	armc2 (ENSSSAG00000055198)	foxo3b (ENSSSAG00000055241)	ENSSSAG00000098707	snx3 (ENSSSAG00000055389)	nr2e1 (ENSSSAG00000108206)	OSTM1 (ENSSSAG00000055399)	ENSSSAG00000055427 #22	ENSSSAG00000055508	ENSSSAG00000006716	ENSSSAG00000006676	ENSSSAG00000006651	ENSSSAG00000006635	IFT122 (ENSSSAG00000098697)	exorh (ENSSSAG00000006623)	PLXND1 (ENSSSAG00000005934)	TMCC1 (ENSSSAG00000109496)	trh (ENSSSAG00000077925)	ENSSSAG00000077809	ENSSSAG00000077668	ENSSSAG00000077650	ENSSSAG00000077635	ENSSSAG00000106287
River trout	MODERN SPECIES	28	sash1a (ENSSTUG00000023413)	usta (ENSSTUG00000023396)	slc22a16 (ENSSTUG00000023388)	METTL24 (ENSSTUG00000023383)	cdc40 (ENSSTUG00000023272)	WASF1 (ENSSTUG00000023176)	GPR6 (ENSSTUG00000023163)	cd164 (ENSSTUG00000023147)	sesn1 (ENSSTUG00000022819)	ARMC2 (ENSSTUG00000022755)	foxo3b (ENSSTUG00000022742)	snx3 (ENSSTUG00000022724)	nr2e1 (ENSSTUG00000022609)	OSTM1 (ENSSTUG00000022583)	ENSSTUG00000022577	PLEKHG1 (ENSSTUG00000022487) #22	ENSSTUG00000022477
Oncorhynchus	ANCESTRAL SPECIES	25	ENSGT00510000048701.a.b	ENSGT00940000156778.l.b	ENSGT00530000063408.A.j	ENSGT00940000160723.w	ENSGT00390000002881.fc.a	ENSGT00530000063583.b.b	ENSGT00950000182962.b.b.g.a	ENSGT01060000248564.b.a.a.b.d	ENSGT00530000063929.a.b.c	ENSGT00950000183168.B.b.b	ENSGT00390000000663	ENSGT00940000161401.m.b	ENSGT00940000153609.b.eb	ENSGT00940000156693.f	ENSGT00390000012341.d	ENSGT00940000157723.q.b #22	ENSGT00550000074878.ib.a
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000003027	WASF1 (ENSOMYG00000003111)	ENSOMYG00000003152	ENSOMYG00000049495	cd164 (ENSOMYG00000003178)	ENSOMYG00000058594	sesn1 (ENSOMYG00000003265)	ARMC2 (ENSOMYG00000003416)	foxo3b (ENSOMYG00000003539)	ENSOMYG00000076318	ENSOMYG00000072341	snx3 (ENSOMYG00000003564)	ENSOMYG00000003617	OSTM1 (ENSOMYG00000003696)	ENSOMYG00000053109	ENSOMYG00000003808 #22	ENSOMYG00000003853	ENSOMYG00000058397	ENSOMYG00000063278	ENSOMYG00000062400	ENSOMYG00000054475	ENSOMYG00000064092	ENSOMYG00000003892	ENSOMYG00000004401	ENSOMYG00000004775	ENSOMYG00000060455	ENSOMYG00000005129	ENSOMYG00000005527	ENSOMYG00000005586	ENSOMYG00000005606	dnaaf11 (ENSOMYG00000005775)
Oncorhynchus_a	ANCESTRAL SPECIES	17	ENSGT00940000156778.l.b	ENSGT00530000063408.A.j	ENSGT00940000160723.w	ENSGT00390000002881.fc.a	ENSGT00530000063583.b.b	ENSGT00950000182962.b.b.g.a	ENSGT01060000248564.b.a.a.b.d	ENSGT00990000211334	ENSGT00530000063929.a.b.c	ENSGT00950000183168.B.b.b	ENSGT00390000000663	ENSGT00940000161401.m.b	ENSGT00940000153609.b.eb.a.a	ENSGT00940000156693.f	ENSGT00390000012341.d	ENSGT00940000157723.q.b #22
Chinook salmon	MODERN SPECIES	5	itpkcb (ENSOTSG00005035247)	snrpa (ENSOTSG00005035248)	ENSOTSG00005035276	clasrp (ENSOTSG00005035279)	ENSOTSG00005035283	ENSOTSG00005035289	fosb (ENSOTSG00005035307)	si:ch211-160d20.3 (ENSOTSG00005035310)	ttc9b (ENSOTSG00005035312)	MAP3K10 (ENSOTSG00005035313)	SIPA1L3 (ENSOTSG00005035348)	six9 (ENSOTSG00005035865)	six5 (ENSOTSG00005035866)	tbcb (ENSOTSG00005035868)	clptm1 (ENSOTSG00005035871)	PLEKHG1 (ENSOTSG00005036015) #22	ENSOTSG00005036018	ENSOTSG00005036022	ENSOTSG00005036023	ENSOTSG00005036024	il10ra (ENSOTSG00005036025)	tmprss4a (ENSOTSG00005036026)	scn4ba (ENSOTSG00005036027)	SCN2B (ENSOTSG00005036028)	zgc:172282 (ENSOTSG00005036029)	zgc:162730 (ENSOTSG00005036030)	zgc:114130 (ENSOTSG00005036032)	rrp15 (ENSOTSG00005036033)	ENSOTSG00005036035	ENSOTSG00005036036	si:cabz01090165.1 (ENSOTSG00005036037)
Coho salmon	MODERN SPECIES	3	usta (ENSOKIG00005023468)	slc22a16 (ENSOKIG00005023489)	ENSOKIG00005023502	METTL24 (ENSOKIG00005023508)	CDC40 (ENSOKIG00005023517)	WASF1 (ENSOKIG00005023552)	GPR6 (ENSOKIG00005023576)	ENSOKIG00005023585	cd164 (ENSOKIG00005023599)	sesn1 (ENSOKIG00005023618)	ARMC2 (ENSOKIG00005023639)	foxo3b (ENSOKIG00005023694)	snx3 (ENSOKIG00005023707)	nr2e1 (ENSOKIG00005023746)	OSTM1 (ENSOKIG00005023807)	PLEKHG1 (ENSOKIG00005023847) #22	ENSOKIG00005023941	ENSOKIG00005023978	DNAJA1 (ENSOKIG00005024068)	ENSOKIG00005024186	ENSOKIG00005024224	rps6 (ENSOKIG00005024250)	ENSOKIG00005024297	ENSOKIG00005024312	ENSOKIG00005024333	mttp (ENSOKIG00005024462)	C4orf54 (ENSOKIG00005026267)	lgi2b (ENSOKIG00005026320)	ccdc149b (ENSOKIG00005026389)	SOD3 (ENSOKIG00005026417)	DHX15 (ENSOKIG00005026440)
Huchen	MODERN SPECIES	4780																PLEKHG1 (ENSHHUG00000005054) #22	tcp1 (ENSHHUG00000005120)
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000157723.r #22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000157723.r #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000157723.r #22
Salmo	ANCESTRAL SPECIES																	ENSGT00940000157723.r #22
Atlantic salmon	MODERN SPECIES		ZBTB8OS (ENSSSAG00000005082)	ENSSSAG00000005091	ENSSSAG00000005096	ENSSSAG00000005107	ENSSSAG00000005120	ENSSSAG00000002448	C14orf28 (ENSSSAG00000005135)	ENSSSAG00000005331	ENSSSAG00000007092	INAFM2 (ENSSSAG00000111422)	ANKRD63 (ENSSSAG00000106191)	PAK6 (ENSSSAG00000007106)	zfyve19 (ENSSSAG00000007122)	ppp1r14d (ENSSSAG00000007135) ##20	spint1a (ENSSSAG00000007139)	ENSSSAG00000007145 #22	xgb (ENSSSAG00000100306)	srp14 (ENSSSAG00000117033)	ENSSSAG00000007182	CEP170B (ENSSSAG00000087337)	ENSSSAG00000120525	ENSSSAG00000014992	adss1 (ENSSSAG00000015427)	ENSSSAG00000043349	ENSSSAG00000078052	dnajc17 (ENSSSAG00000043419)	ENSSSAG00000106511	gchfr (ENSSSAG00000043443)	ENSSSAG00000043462	ENSSSAG00000085966	ENSSSAG00000108030
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000157723.r #22
Rainbow trout	MODERN SPECIES	29	eif5 (ENSOMYG00000003370)	MARK3 (ENSOMYG00000003515)	ENSOMYG00000075096	CKB (ENSOMYG00000003805)	ENSOMYG00000003848	ENSOMYG00000003876	ENSOMYG00000003990	ENSOMYG00000004040	ENSOMYG00000004170	ENSOMYG00000004200	ENSOMYG00000004222	ENSOMYG00000053095	ENSOMYG00000076150 ##20	ENSOMYG00000056790	ENSOMYG00000004330	ENSOMYG00000004426 #22	ENSOMYG00000066911	ENSOMYG00000004507	paplnb (ENSOMYG00000004534)	erh (ENSOMYG00000004566)	smek1 (ENSOMYG00000004771)	ENSOMYG00000059366	mycn (ENSOMYG00000004942)	ENSOMYG00000004959	ENSOMYG00000004980	ENSOMYG00000005108	tram2 (ENSOMYG00000005145)	xkr5a (ENSOMYG00000005163)	ENSOMYG00000005214	prep (ENSOMYG00000005745)	ENSOMYG00000006059
Huchen	DUPLICATION
Huchen	MODERN SPECIES	1707								zbtb1 (ENSHHUG00000032366)	ENSHHUG00000032365	ENSHHUG00000032363	ENSHHUG00000032360	pak6b (ENSHHUG00000032352)	ENSHHUG00000032347	ppp1r14d (ENSHHUG00000032343) ##20	spint1b (ENSHHUG00000032336)	ENSHHUG00000032319 #22	ENSHHUG00000032309	ENSHHUG00000032299
Huchen	MODERN SPECIES	1757															ENSHHUG00000048894	ENSHHUG00000048885 #22
Elephant shark	MODERN SPECIES	1519	nt5e (ENSCMIG00000007573)	polr3f (ENSCMIG00000007570)	dzank1 (ENSCMIG00000007565)	kat14 (ENSCMIG00000007535)	ENSCMIG00000007513	mgme1 (ENSCMIG00000007508)	snx5 (ENSCMIG00000007415)	rrbp1a (ENSCMIG00000007336)	ENSCMIG00000007318	tmed4 (ENSCMIG00000007315)	ENSCMIG00000007313	pcmt (ENSCMIG00000007310) #12	ENSCMIG00000007302 #13	ppp1r14c (ENSCMIG00000007295) #20	iyd (ENSCMIG00000007293) #21	PLEKHG1 (ENSCMIG00000007287) #22	mthfd1l (ENSCMIG00000007030) #24	ENSCMIG00000006916 #27	zbtb2b (ENSCMIG00000006914) #28	rmnd1 (ENSCMIG00000006908) #29	armt1 (ENSCMIG00000006901) #30	CCDC170 (ENSCMIG00000006895) #31	esr1 (ENSCMIG00000006851) #32	SYNE1 (ENSCMIG00000006500) #33	tmem178a (ENSCMIG00000006284)	MAP4K3 (ENSCMIG00000006116)	CDKL4 (ENSCMIG00000005992)	RDH13 (ENSCMIG00000005985)	sos2 (ENSCMIG00000005958)	ENSCMIG00000005936	morn2 (ENSCMIG00000005929)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000157723 #22
Lamprey	MODERN SPECIES	138							ENSPMAG00000005912	ENSPMAG00000005859	ENSPMAG00000005835	ENSPMAG00000005820	dph6 (ENSPMAG00000005810)	drap1 (ENSPMAG00000005794)	ENSPMAG00000005789	GPR135 (ENSPMAG00000005785)	PC (ENSPMAG00000005777)	ENSPMAG00000005742 #22	ENSPMAG00000005733	ENSPMAG00000005705	nap1l1 (ENSPMAG00000005613)	ENSPMAG00000005605	ENSPMAG00000005505	ENSPMAG00000005476	ENSPMAG00000005472	ENSPMAG00000005423	bms1 (ENSPMAG00000005401)	ENSPMAG00000005397
Hagfish	MODERN SPECIES	1348											ENSEBUG00000006829	ENSEBUG00000009842	tbp (ENSEBUG00000009217)	ENSEBUG00000011158	ENSEBUG00000007693	ENSEBUG00000016124 #22	ENSEBUG00000001901	ENSEBUG00000010994	coq6 (ENSEBUG00000016695)	cct4 (ENSEBUG00000007694)	ENSEBUG00000008847	ENSEBUG00000004232	ENSEBUG00000012825	slc35b2 (ENSEBUG00000000837)	ENSEBUG00000008779	ENSEBUG00000002670