Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00940000154479.a #7	ENSGT00390000017480 #8	ENSGT00940000158775 #9	ENSGT00390000014065 #10	ENSGT00940000158970 #11	ENSGT00390000016785 #12	ENSGT01020000230346.E #15	ENSGT00940000157349 #16	ENSGT00940000159754 #17	ENSGT00940000157698.b #18	ENSGT00940000156718 #19	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062	ENSGT00940000160630 #30	ENSGT00390000007055 #31	ENSGT00940000154348.c.b.a #32	ENSGT00390000016223 #33	ENSGT00940000160394.a #34	ENSGT00390000007640.b #35
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00940000154479.a #7	ENSGT00390000017480 #8	ENSGT00940000158775 #9	ENSGT00390000014065 #10	ENSGT00940000158970 #11	ENSGT00390000016785 #12	ENSGT01020000230346.E #15	ENSGT00940000157349 #16	ENSGT00940000159754 #17	ENSGT00940000157698.b #18	ENSGT00940000156718 #19	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062	ENSGT00940000160630 #30	ENSGT00390000007055 #31	ENSGT00940000154348.c.b.a #32	ENSGT00390000016223 #33	ENSGT00940000160394.a #34	ENSGT00390000007640.b #35	ENSGT00940000156152 #36
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00940000154479.a #7	ENSGT00390000017480 #8	ENSGT00940000158775 #9	ENSGT00390000014065 #10	ENSGT00940000158970 #11	ENSGT00390000016785 #12	ENSGT01020000230346.E #15	ENSGT00940000157349 #16	ENSGT00940000159754 #17	ENSGT00940000157698.b #18	ENSGT00940000156718 #19	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062	ENSGT00940000160630 #30	ENSGT00390000007055 #31	ENSGT00940000154348.c.b.a #32	ENSGT00390000016223 #33	ENSGT00940000160394.a #34	ENSGT00390000007640.b #35	ENSGT00940000156152 #36
Eurasian red squirrel	MODERN SPECIES	2	FAM180B (ENSSVLG00005009289) #7	NDUFS3 (ENSSVLG00005009316) #8	KBTBD4 (ENSSVLG00005009359) #9	PTPMT1 (ENSSVLG00005009417) #10	CELF1 (ENSSVLG00005009492) #11	RAPSN (ENSSVLG00005009920) #12	ENSSVLG00005009993 #13	ENSSVLG00005010167 #14	ENSSVLG00005010225 #15	ENSSVLG00005010302 #16	SPI1 (ENSSVLG00005010597) #17	MYBPC3 (ENSSVLG00005010729) #18	MADD (ENSSVLG00005011762) #19	ENSSVLG00005012055 #20	NR1H3 (ENSSVLG00005012159) #21	ACP2 (ENSSVLG00005012397) #22	DDB2 (ENSSVLG00005012634) #23	PACSIN3 (ENSSVLG00005013010) #24	ARFGAP2 (ENSSVLG00005013354) #25	CSTPP1 (ENSSVLG00005013495) #26	LRP4 (ENSSVLG00005013702) #27	CKAP5 (ENSSVLG00005013939) #28	F2 (ENSSVLG00005014116) #29	ARHGAP1 (ENSSVLG00005014685) #30	ENSSVLG00005014869 #31	HARBI1 (ENSSVLG00005015510) #32	AMBRA1 (ENSSVLG00005015569) #33	CHRM4 (ENSSVLG00005015740) #34	MDK (ENSSVLG00005015782) #35	DGKZ (ENSSVLG00005015887) #36	ENSSVLG00005015926 #37
Marmotini	ANCESTRAL SPECIES	22	ENSGT00940000160201	ENSGT00390000000020.b.e	ENSGT00940000161832.a	ENSGT00940000154479.a #7	ENSGT00390000017480 #8	ENSGT00940000158775 #9	ENSGT00390000014065 #10	ENSGT00940000158970 #11	ENSGT00390000016785 #12	ENSGT01020000230346.E #15	ENSGT00940000157349 #16	ENSGT00940000159754 #17	ENSGT00940000157698.b #18	ENSGT00940000156718 #19	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062	ENSGT00940000160630 #30	ENSGT00390000007055 #31	ENSGT00940000154348.c.b.a #32	ENSGT00390000016223 #33	ENSGT00940000160394.a #34	ENSGT00390000007640.b #35	ENSGT00940000156152 #36
Marmotini_b	ANCESTRAL SPECIES	23	ENSGT00940000160201	ENSGT00390000000020.b.e	ENSGT00940000161832.a	ENSGT00940000154479.a #7	ENSGT00390000017480 #8	ENSGT00940000158775 #9	ENSGT00390000014065 #10	ENSGT00940000158970 #11	ENSGT00390000016785 #12	ENSGT01020000230346.E #15	ENSGT00940000157349 #16	ENSGT00940000159754 #17	ENSGT00940000157698.b #18	ENSGT00940000156718 #19	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062	ENSGT00940000160630 #30	ENSGT00390000007055 #31	ENSGT00940000154348.c.b.a #32	ENSGT00390000016223 #33	ENSGT00940000160394.a #34	ENSGT00390000007640.b #35	ENSGT00940000156152 #36
Arctic ground squirrel	MODERN SPECIES	208	MTCH2 (ENSUPAG00010014096)	C1QTNF4 (ENSUPAG00010014090)	FAM180B (ENSUPAG00010014076) #7	NDUFS3 (ENSUPAG00010014067) #8	KBTBD4 (ENSUPAG00010014056) #9	ENSUPAG00010014045	CELF1 (ENSUPAG00010013973) #11	RAPSN (ENSUPAG00010013926) #12	PSMC3 (ENSUPAG00010013908) #15	SLC39A13 (ENSUPAG00010013855) #16	SPI1 (ENSUPAG00010013850) #17	ENSUPAG00010013841	MYBPC3 (ENSUPAG00010013812) #18	MADD (ENSUPAG00010011229) #19	NR1H3 (ENSUPAG00010011188) #21	ACP2 (ENSUPAG00010011162) #22	DDB2 (ENSUPAG00010011149) #23	PACSIN3 (ENSUPAG00010011141) #24	ARFGAP2 (ENSUPAG00010011117) #25	CSTPP1 (ENSUPAG00010011093) #26	LRP4 (ENSUPAG00010011049) #27	CKAP5 (ENSUPAG00010010730) #28	F2 (ENSUPAG00010010714) #29	ZNF408 (ENSUPAG00010010704)	ARHGAP1 (ENSUPAG00010010696) #30	ATG13 (ENSUPAG00010010621) #31	HARBI1 (ENSUPAG00010010611) #32	AMBRA1 (ENSUPAG00010010430) #33	CHRM4 (ENSUPAG00010010417) #34	MDK (ENSUPAG00010010379) #35	DGKZ (ENSUPAG00010010211) #36
Squirrel	MODERN SPECIES	162	AGBL2 (ENSSTOG00000003491)	ENSSTOG00000028441	C1QTNF4 (ENSSTOG00000024273)	FAM180B (ENSSTOG00000000628) #7	NDUFS3 (ENSSTOG00000000622) #8	KBTBD4 (ENSSTOG00000020864) #9	PTPMT1 (ENSSTOG00000019770) #10	CELF1 (ENSSTOG00000000613) #11	RAPSN (ENSSTOG00000011047) #12	PSMC3 (ENSSTOG00000011038) #15	SLC39A13 (ENSSTOG00000027722) #16	SPI1 (ENSSTOG00000022735) #17	MYBPC3 (ENSSTOG00000026473) #18	MADD (ENSSTOG00000007626) #19	NR1H3 (ENSSTOG00000007611) #21	ACP2 (ENSSTOG00000007586) #22	DDB2 (ENSSTOG00000007571) #23	PACSIN3 (ENSSTOG00000007547) #24	ARFGAP2 (ENSSTOG00000007524) #25	CSTPP1 (ENSSTOG00000007512) #26	LRP4 (ENSSTOG00000005236) #27	CKAP5 (ENSSTOG00000005158) #28	F2 (ENSSTOG00000005130) #29	ZNF408 (ENSSTOG00000005114)	ARHGAP1 (ENSSTOG00000026557) #30	ATG13 (ENSSTOG00000005077) #31	HARBI1 (ENSSTOG00000005072) #32	AMBRA1 (ENSSTOG00000019411) #33	CHRM4 (ENSSTOG00000022455) #34	MDK (ENSSTOG00000027636) #35	DGKZ (ENSSTOG00000012704) #36
Alpin marmot	MODERN SPECIES	3	ENSMMMG00000015743	ENSMMMG00000015697	ENSMMMG00000015683	FAM180B (ENSMMMG00000015675) #7	NDUFS3 (ENSMMMG00000015667) #8	KBTBD4 (ENSMMMG00000015654) #9	ENSMMMG00000015652	CELF1 (ENSMMMG00000015346) #11	RAPSN (ENSMMMG00000015294) #12	PSMC3 (ENSMMMG00000015270) #15	SLC39A13 (ENSMMMG00000015224) #16	SPI1 (ENSMMMG00000015212) #17	MYBPC3 (ENSMMMG00000015189) #18	MADD (ENSMMMG00000014606) #19	NR1H3 (ENSMMMG00000014541) #21	ACP2 (ENSMMMG00000014527) #22	DDB2 (ENSMMMG00000014518) #23	PACSIN3 (ENSMMMG00000014498) #24	ARFGAP2 (ENSMMMG00000014424) #25	CSTPP1 (ENSMMMG00000014382) #26	LRP4 (ENSMMMG00000014335) #27	CKAP5 (ENSMMMG00000013993) #28	F2 (ENSMMMG00000013961) #29	ZNF408 (ENSMMMG00000013944)	ARHGAP1 (ENSMMMG00000013934) #30	ATG13 (ENSMMMG00000013875) #31	HARBI1 (ENSMMMG00000013860) #32	AMBRA1 (ENSMMMG00000013284) #33	CHRM4 (ENSMMMG00000013278) #34	MDK (ENSMMMG00000013259) #35	DGKZ (ENSMMMG00000013155) #36
Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480 #8	ENSGT00940000158775 #9	ENSGT00390000014065 #10	ENSGT00940000158970 #11	ENSGT00390000016785 #12	ENSGT01020000230346.E #15	ENSGT00940000157349 #16	ENSGT00940000159754 #17	ENSGT00940000157698.b #18	ENSGT00940000156718 #19	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00940000160630 #30	ENSGT00390000007055 #31	ENSGT00940000154348.c.b.a #32	ENSGT00390000016223 #33	ENSGT00940000160394.a #34	ENSGT00390000007640.b #35	ENSGT00940000156152 #36	ENSGT00860000136066
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480 #8	ENSGT00940000158775 #9	ENSGT00390000014065 #10	ENSGT00940000158970 #11	ENSGT00390000016785 #12	ENSGT01020000230346.E #15	ENSGT00940000157349 #16	ENSGT00940000159754 #17	ENSGT00940000157698.b #18	ENSGT00940000156718 #19	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00940000160630 #30	ENSGT00390000007055 #31	ENSGT00940000154348.c.b.a #32	ENSGT00390000016223 #33	ENSGT00940000160394.a #34	ENSGT00390000007640.b #35	ENSGT00940000156152 #36	ENSGT00860000136066
Guinea pig	MODERN SPECIES	72	FNBP4 (ENSCPOG00000000320)	AGBL2 (ENSCPOG00000003935)	MTCH2 (ENSCPOG00000006293)	C1QTNF4 (ENSCPOG00000023948)	NDUFS3 (ENSCPOG00000006141) #8	KBTBD4 (ENSCPOG00000019448) #9	PTPMT1 (ENSCPOG00000031147) #10	CELF1 (ENSCPOG00000036381) #11	RAPSN (ENSCPOG00000015456) #12	PSMC3 (ENSCPOG00000008176) #15	SLC39A13 (ENSCPOG00000008169) #16	SPI1 (ENSCPOG00000022138) #17	MYBPC3 (ENSCPOG00000013368) #18	MADD (ENSCPOG00000013364) #19	NR1H3 (ENSCPOG00000013362) #21	ACP2 (ENSCPOG00000013359) #22	DDB2 (ENSCPOG00000013358) #23	PACSIN3 (ENSCPOG00000013356) #24	ARFGAP2 (ENSCPOG00000013352) #25	CSTPP1 (ENSCPOG00000020334) #26	LRP4 (ENSCPOG00000007072) #27	CKAP5 (ENSCPOG00000007054) #28	F2 (ENSCPOG00000026682) #29	ARHGAP1 (ENSCPOG00000013046) #30	ATG13 (ENSCPOG00000013042) #31	HARBI1 (ENSCPOG00000037304) #32	AMBRA1 (ENSCPOG00000007341) #33	CHRM4 (ENSCPOG00000020788) #34	MDK (ENSCPOG00000007340) #35	DGKZ (ENSCPOG00000009636) #36	CREB3L1 (ENSCPOG00000010073)
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00390000000972	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480 #8	ENSGT00940000158775 #9	ENSGT00940000158970 #11	ENSGT00390000016785 #12	ENSGT01020000230346.E #15	ENSGT00940000157349 #16	ENSGT00940000159754 #17	ENSGT00940000157698.b #18	ENSGT00940000156718 #19	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00940000160630 #30	ENSGT00390000007055 #31	ENSGT00940000154348.c.b.a #32	ENSGT00390000016223 #33	ENSGT00940000160394.a #34	ENSGT00390000007640.b #35	ENSGT00940000156152 #36	ENSGT00860000136066
Long-tailed chinchilla	MODERN SPECIES	129	PTPRJ (ENSCLAG00000015568)	NUP160 (ENSCLAG00000015457)	FNBP4 (ENSCLAG00000014534)	MTCH2 (ENSCLAG00000012026)	C1QTNF4 (ENSCLAG00000015186)	NDUFS3 (ENSCLAG00000014873) #8	KBTBD4 (ENSCLAG00000016255) #9	CELF1 (ENSCLAG00000011791) #11	RAPSN (ENSCLAG00000015497) #12	PSMC3 (ENSCLAG00000013916) #15	SLC39A13 (ENSCLAG00000014480) #16	SPI1 (ENSCLAG00000017201) #17	MYBPC3 (ENSCLAG00000015418) #18	MADD (ENSCLAG00000012503) #19	NR1H3 (ENSCLAG00000013563) #21	ACP2 (ENSCLAG00000014608) #22	DDB2 (ENSCLAG00000016473) #23	ENSCLAG00000012709 #24	ARFGAP2 (ENSCLAG00000016467) #25	CSTPP1 (ENSCLAG00000014110) #26	LRP4 (ENSCLAG00000016159) #27	CKAP5 (ENSCLAG00000015801) #28	F2 (ENSCLAG00000015618) #29	ARHGAP1 (ENSCLAG00000013542) #30	ATG13 (ENSCLAG00000015328) #31	HARBI1 (ENSCLAG00000013578) #32	AMBRA1 (ENSCLAG00000015156) #33	CHRM4 (ENSCLAG00000013251) #34	MDK (ENSCLAG00000014462) #35	DGKZ (ENSCLAG00000016057) #36	ENSCLAG00000014194
Degu	MODERN SPECIES	59	PTPRJ (ENSODEG00000016025)	NUP160 (ENSODEG00000015381)	FNBP4 (ENSODEG00000016574)	AGBL2 (ENSODEG00000016111)	MTCH2 (ENSODEG00000015416)	NDUFS3 (ENSODEG00000015948) #8	KBTBD4 (ENSODEG00000015830) #9	CELF1 (ENSODEG00000015204) #11	RAPSN (ENSODEG00000015194) #12	ENSODEG00000016550 #15	SLC39A13 (ENSODEG00000015895) #16	SPI1 (ENSODEG00000015369) #17	MYBPC3 (ENSODEG00000016030) #18	MADD (ENSODEG00000017645) #19	NR1H3 (ENSODEG00000016180) #21	ACP2 (ENSODEG00000015528) #22	ENSODEG00000015965 #24	ENSODEG00000016456 #25	CSTPP1 (ENSODEG00000016656) #26	LRP4 (ENSODEG00000015720) #27	CKAP5 (ENSODEG00000016409) #28	F2 (ENSODEG00000016157) #29	ARHGAP1 (ENSODEG00000016156) #30	ATG13 (ENSODEG00000017294) #31	ENSODEG00000016339	AMBRA1 (ENSODEG00000016633) #33	CHRM4 (ENSODEG00000020352) #34	MDK (ENSODEG00000015931) #35	DGKZ (ENSODEG00000016309) #36	ENSODEG00000016420 #36	ENSODEG00000016039
Naked mole-rat female	MODERN SPECIES	14	ENSHGLG00000039374	ENSHGLG00000008506	ENSHGLG00000043784	MTCH2 (ENSHGLG00000017536)	FAM180B (ENSHGLG00000038229) #7	NDUFS3 (ENSHGLG00000018368) #8	KBTBD4 (ENSHGLG00000047234) #9	ENSHGLG00000037048	ENSHGLG00000006909 #11	RAPSN (ENSHGLG00000008521) #12	PSMC3 (ENSHGLG00000005713) #15	SLC39A13 (ENSHGLG00000041087) #16	ENSHGLG00000011456 #17	ENSHGLG00000044290 #18	NR1H3 (ENSHGLG00000014541) #21	ENSHGLG00000036516 #22	DDB2 (ENSHGLG00000018689) #23	ENSHGLG00000040462 #25	CSTPP1 (ENSHGLG00000018725) #26	ARHGAP1 (ENSHGLG00000017685) #30	ENSHGLG00000013428 #31	ENSHGLG00000018447 #32	AMBRA1 (ENSHGLG00000017564) #33	ENSHGLG00000034290	ENSHGLG00000042531	ENSHGLG00000032476 #36	CREB3L1 (ENSHGLG00000048284)	ENSHGLG00000033741	ENSHGLG00000037709	ENSHGLG00000050302	ENSHGLG00000032419
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480 #8	ENSGT00940000158775 #9	ENSGT00390000014065 #10	ENSGT00940000158970 #11	ENSGT00390000016785 #12	ENSGT01020000230346.E #15	ENSGT00940000157349 #16	ENSGT00940000159754 #17	ENSGT00940000157698.b #18	ENSGT00940000156718 #19	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062	ENSGT00940000160630 #30	ENSGT00390000007055 #31	ENSGT00940000154348.c.b.a #32	ENSGT00390000016223 #33	ENSGT00940000160394.a #34	ENSGT00390000007640.b #35
Myomorpha	ANCESTRAL SPECIES	4	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480 #8	ENSGT00940000158775 #9	ENSGT00390000014065 #10	ENSGT00940000158970 #11	ENSGT00390000016785 #12	ENSGT01020000230346.E #15	ENSGT00940000157349 #16	ENSGT00940000159754 #17	ENSGT00940000157698.b #18	ENSGT00940000156718 #19	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062	ENSGT00940000160630 #30	ENSGT00390000007055 #31	ENSGT00940000154348.c.b.a #32	ENSGT00390000016223 #33	ENSGT00940000160394.a #34	ENSGT00390000007640.b #35
Muroidea	ANCESTRAL SPECIES	2	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480 #8	ENSGT00940000158775 #9	ENSGT00390000014065 #10	ENSGT00940000158970 #11	ENSGT00390000016785 #12	ENSGT01020000230346.E #15	ENSGT00940000157349 #16	ENSGT00940000159754 #17	ENSGT00940000157698.b #18	ENSGT00940000156718 #19	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062	ENSGT00940000160630 #30	ENSGT00390000007055 #31	ENSGT00940000154348.c.b.a #32	ENSGT00390000016223 #33	ENSGT00940000160394.a #34	ENSGT00390000007640.b #35
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480 #8	ENSGT00940000158775 #9	ENSGT00390000014065 #10	ENSGT00940000158970 #11	ENSGT00390000016785 #12	ENSGT01020000230346.E #15	ENSGT00940000157349 #16	ENSGT00940000159754 #17	ENSGT00940000157698.b #18	ENSGT00940000156718 #19	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062	ENSGT00940000160630 #30	ENSGT00390000007055 #31	ENSGT00940000154348.c.b.a #32	ENSGT00390000016223 #33	ENSGT00940000160394.a #34	ENSGT00390000007640.b #35
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480 #8	ENSGT00940000158775 #9	ENSGT00390000014065 #10	ENSGT00940000158970 #11	ENSGT00390000016785 #12	ENSGT01020000230346.E #15	ENSGT00940000157349 #16	ENSGT00940000159754 #17	ENSGT00940000157698.b #18	ENSGT00940000156718 #19	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062	ENSGT00940000160630 #30	ENSGT00390000007055 #31	ENSGT00940000154348.c.b.a #32	ENSGT00390000016223 #33	ENSGT00940000160394.a #34	ENSGT00390000007640.b #35	ENSGT00940000156152 #36
Cricetidae_B	ANCESTRAL SPECIES	34	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480 #8	ENSGT00940000158775 #9	ENSGT00390000014065 #10	ENSGT00940000158970 #11	ENSGT00390000016785 #12	ENSGT01020000230346.E #15	ENSGT00940000157349 #16	ENSGT00940000159754 #17	ENSGT00940000157698.b #18	ENSGT00940000156718 #19	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062	ENSGT00940000160630 #30	ENSGT00390000007055 #31	ENSGT00940000154348.c.b.a #32	ENSGT00390000016223 #33	ENSGT00940000160394.a #34	ENSGT00390000007640.b #35	ENSGT00940000156152 #36
Northern American deer mouse	MODERN SPECIES	17	Nup160 (ENSPEMG00000018101)	Fnbp4 (ENSPEMG00000016688)	Agbl2 (ENSPEMG00000001437)	Mtch2 (ENSPEMG00000010063)	C1qtnf4 (ENSPEMG00000024602)	Ndufs3 (ENSPEMG00000007248) #8	Kbtbd4 (ENSPEMG00000001992) #9	Ptpmt1 (ENSPEMG00000030250) #10	Celf1 (ENSPEMG00000015644) #11	Rapsn (ENSPEMG00000016952) #12	Slc39a13 (ENSPEMG00000016290) #16	Spi1 (ENSPEMG00000009647) #17	Mybpc3 (ENSPEMG00000009479) #18	Madd (ENSPEMG00000001264) #19	Nr1h3 (ENSPEMG00000018824) #21	Acp2 (ENSPEMG00000011860) #22	Ddb2 (ENSPEMG00000012899) #23	Pacsin3 (ENSPEMG00000018424) #24	Arfgap2 (ENSPEMG00000009220) #25	Cstpp1 (ENSPEMG00000018931) #26	Lrp4 (ENSPEMG00000015598) #27	Ckap5 (ENSPEMG00000007231) #28	F2 (ENSPEMG00000018118) #29	Zfp408 (ENSPEMG00000016757)	Arhgap1 (ENSPEMG00000011370) #30	Atg13 (ENSPEMG00000017021) #31	Harbi1 (ENSPEMG00000013606) #32	ENSPEMG00000025318	Ambra1 (ENSPEMG00000005111) #33	Chrm4 (ENSPEMG00000028345) #34	Mdk (ENSPEMG00000014123) #35
Prairie vole	MODERN SPECIES	81	Agbl2 (ENSMOCG00000015547)	Mtch2 (ENSMOCG00000001577)	C1qtnf4 (ENSMOCG00000013500)	Ndufs3 (ENSMOCG00000009375) #8	Kbtbd4 (ENSMOCG00000021780) #9	Ptpmt1 (ENSMOCG00000018913) #10	Celf1 (ENSMOCG00000012633) #11	Rapsn (ENSMOCG00000012267) #12	Psmc3 (ENSMOCG00000001464) #15	ENSMOCG00000006097 #16	ENSMOCG00000008195 #16	Spi1 (ENSMOCG00000006114) #17	Mybpc3 (ENSMOCG00000008344) #18	Madd (ENSMOCG00000003278) #19	Nr1h3 (ENSMOCG00000010671) #21	Acp2 (ENSMOCG00000002882) #22	Ddb2 (ENSMOCG00000021291) #23	Pacsin3 (ENSMOCG00000022577) #24	Arfgap2 (ENSMOCG00000016700) #25	Cstpp1 (ENSMOCG00000006672) #26	Lrp4 (ENSMOCG00000005823) #27	Ckap5 (ENSMOCG00000022214) #28	F2 (ENSMOCG00000019585) #29	Arhgap1 (ENSMOCG00000008533) #30	Atg13 (ENSMOCG00000018209) #31	ENSMOCG00000007253	Ambra1 (ENSMOCG00000018792) #33	Chrm4 (ENSMOCG00000016103) #34	Mdk (ENSMOCG00000014474) #35	Dgkz (ENSMOCG00000000694) #36	Creb3l1 (ENSMOCG00000012802)
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480 #8	ENSGT00940000158775 #9	ENSGT00390000014065 #10	ENSGT00940000158970 #11	ENSGT00390000016785 #12	ENSGT01020000230346.E #15	ENSGT00940000157349 #16	ENSGT00940000159754 #17	ENSGT00940000157698.b #18	ENSGT00940000156718 #19	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062	ENSGT00940000160630 #30	ENSGT00390000007055 #31	ENSGT00940000154348.c.b.a #32	ENSGT00390000016223 #33	ENSGT00940000160394.a #34	ENSGT00390000007640.b #35	ENSGT00940000156152 #36
Chinese hamster chok1gshd	MODERN SPECIES	188	Fnbp4 (ENSCGRG00001022832)	Agbl2 (ENSCGRG00001000549)	Mtch2 (ENSCGRG00001024807)	C1qtnf4 (ENSCGRG00001007540)	Ndufs3 (ENSCGRG00001024136) #8	Kbtbd4 (ENSCGRG00001023919) #9	Ptpmt1 (ENSCGRG00001012152) #10	Celf1 (ENSCGRG00001011274) #11	Rapsn (ENSCGRG00001009650) #12	Psmc3 (ENSCGRG00001005657) #15	Slc39a13 (ENSCGRG00001003447) #16	Spi1 (ENSCGRG00001009684) #17	Mybpc3 (ENSCGRG00001006702) #18	Madd (ENSCGRG00001024681) #19	Nr1h3 (ENSCGRG00001022656) #21	Acp2 (ENSCGRG00001022138) #22	Ddb2 (ENSCGRG00001012939) #23	Pacsin3 (ENSCGRG00001011840) #24	Arfgap2 (ENSCGRG00001010700) #25	Cstpp1 (ENSCGRG00001020042) #26	Lrp4 (ENSCGRG00001018783) #27	Ckap5 (ENSCGRG00001013368) #28	F2 (ENSCGRG00001023426) #29	Zfp408 (ENSCGRG00001023588)	Arhgap1 (ENSCGRG00001023260) #30	ENSCGRG00001022859	Atg13 (ENSCGRG00001022112) #31	Harbi1 (ENSCGRG00001021313) #32	Ambra1 (ENSCGRG00001020313) #33	Chrm4 (ENSCGRG00001012019) #34	Mdk (ENSCGRG00001022566) #35
Golden Hamster	MODERN SPECIES	618	Nup160 (ENSMAUG00000009877)	Agbl2 (ENSMAUG00000013242)	Mtch2 (ENSMAUG00000009619)	C1qtnf4 (ENSMAUG00000009128)	Ndufs3 (ENSMAUG00000010036) #8	Kbtbd4 (ENSMAUG00000009694) #9	Ptpmt1 (ENSMAUG00000010436) #10	Celf1 (ENSMAUG00000009468) #11	Rapsn (ENSMAUG00000008690) #12	Psmc3 (ENSMAUG00000007346) #15	ENSMAUG00000009110 #16	Spi1 (ENSMAUG00000008854) #17	Mybpc3 (ENSMAUG00000008229) #18	Madd (ENSMAUG00000009156) #19	Nr1h3 (ENSMAUG00000008657) #21	Acp2 (ENSMAUG00000007767) #22	Ddb2 (ENSMAUG00000010179) #23	Pacsin3 (ENSMAUG00000009572) #24	Arfgap2 (ENSMAUG00000009218) #25	ENSMAUG00000008870	ENSMAUG00000008742	Cstpp1 (ENSMAUG00000008635) #26	Lrp4 (ENSMAUG00000016435) #27	Ckap5 (ENSMAUG00000012944) #28	F2 (ENSMAUG00000009414) #29	Arhgap1 (ENSMAUG00000012048) #30	Atg13 (ENSMAUG00000011052) #31	Harbi1 (ENSMAUG00000012193) #32	Ambra1 (ENSMAUG00000008821) #33	Chrm4 (ENSMAUG00000007510) #34	Mdk (ENSMAUG00000006759) #35
Murinae	ANCESTRAL SPECIES	1	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480 #8	ENSGT00940000158775 #9	ENSGT00390000014065 #10	ENSGT00940000158970 #11	ENSGT00390000016785 #12	ENSGT01020000230346.E #15	ENSGT00940000157349 #16	ENSGT00940000159754 #17	ENSGT00940000157698.b #18	ENSGT00940000156718 #19	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062	ENSGT00940000160630 #30	ENSGT00390000007055 #31	ENSGT00940000154348.c.b.a #32	ENSGT00390000016223 #33	ENSGT00940000160394.a #34	ENSGT00390000007640.b #35
Mus	ANCESTRAL SPECIES	1	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480 #8	ENSGT00940000158775 #9	ENSGT00390000014065 #10	ENSGT00940000158970 #11	ENSGT00390000016785 #12	ENSGT01020000230346.E #15	ENSGT00940000157349 #16	ENSGT00940000159754 #17	ENSGT00940000157698.b #18	ENSGT00940000156718 #19	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062	ENSGT00940000160630 #30	ENSGT00390000007055 #31	ENSGT00940000154348.c.b.a #32	ENSGT00390000016223 #33	ENSGT00940000160394.a #34	ENSGT00390000007640.b #35
Mus_A	ANCESTRAL SPECIES		ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480 #8	ENSGT00940000158775 #9	ENSGT00390000014065 #10	ENSGT00940000158970 #11	ENSGT00390000016785 #12	ENSGT01020000230346.E #15	ENSGT00940000157349 #16	ENSGT00940000159754 #17	ENSGT00940000157698.b #18	ENSGT00940000156718 #19	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062	ENSGT00940000160630 #30	ENSGT00390000007055 #31	ENSGT00940000154348.c.b.a #32	ENSGT00390000016223 #33	ENSGT00940000160394.a #34	ENSGT00390000007640.b.g #35
Mus_B	ANCESTRAL SPECIES	1	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480 #8	ENSGT00940000158775 #9	ENSGT00390000014065 #10	ENSGT00940000158970 #11	ENSGT00390000016785 #12	ENSGT01020000230346.E #15	ENSGT00940000157349 #16	ENSGT00940000159754 #17	ENSGT00940000157698.b #18	ENSGT00940000156718 #19	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062	ENSGT00940000160630 #30	ENSGT00390000007055 #31	ENSGT00940000154348.c.b.a #32	ENSGT00390000016223 #33	ENSGT00940000160394.a #34	ENSGT00390000007640.b.g #35
Mus_C	ANCESTRAL SPECIES		ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480 #8	ENSGT00940000158775 #9	ENSGT00390000014065 #10	ENSGT00940000158970 #11	ENSGT00390000016785 #12	ENSGT01020000230346.E #15	ENSGT00940000157349 #16	ENSGT00940000159754 #17	ENSGT00940000157698.b #18	ENSGT00940000156718 #19	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062	ENSGT00940000160630 #30	ENSGT00390000007055 #31	ENSGT00940000154348.c.b.a #32	ENSGT00390000016223 #33	ENSGT00940000160394.a #34	ENSGT00390000007640.b.g #35
spretus	MODERN SPECIES	11	Nup160 (MGP_SPRETEiJ_G0024852)	Fnbp4 (MGP_SPRETEiJ_G0024853)	Agbl2 (MGP_SPRETEiJ_G0024854)	Mtch2 (MGP_SPRETEiJ_G0024855)	C1qtnf4 (MGP_SPRETEiJ_G0024856)	Ndufs3 (MGP_SPRETEiJ_G0024857) #8	Kbtbd4 (MGP_SPRETEiJ_G0024858) #9	Celf1 (MGP_SPRETEiJ_G0024859) #11	Rapsn (MGP_SPRETEiJ_G0024860) #12	Psmc3 (MGP_SPRETEiJ_G0024861) #15	Slc39a13 (MGP_SPRETEiJ_G0024862) #16	Spi1 (MGP_SPRETEiJ_G0024863) #17	Mybpc3 (MGP_SPRETEiJ_G0024864) #18	Madd (MGP_SPRETEiJ_G0024865) #19	Nr1h3 (MGP_SPRETEiJ_G0024866) #21	Acp2 (MGP_SPRETEiJ_G0024867) #22	Ddb2 (MGP_SPRETEiJ_G0024868) #23	Pacsin3 (MGP_SPRETEiJ_G0024869) #24	Arfgap2 (MGP_SPRETEiJ_G0024870) #25	Cstpp1 (MGP_SPRETEiJ_G0024871) #26	Lrp4 (MGP_SPRETEiJ_G0024872) #27	Ckap5 (MGP_SPRETEiJ_G0024873) #28	F2 (MGP_SPRETEiJ_G0024874) #29	Zfp408 (MGP_SPRETEiJ_G0024875)	Arhgap1 (MGP_SPRETEiJ_G0024876) #30	Atg13 (MGP_SPRETEiJ_G0024877) #31	Harbi1 (MGP_SPRETEiJ_G0024878) #32	Ambra1 (MGP_SPRETEiJ_G0024879) #33	Chrm4 (MGP_SPRETEiJ_G0024880) #34	Mdk (MGP_SPRETEiJ_G0024881) #35	Dgkz (MGP_SPRETEiJ_G0024882) #36
Steppe mouse	MODERN SPECIES	36	Agbl2 (ENSMSIG00000027703)	ENSMSIG00000027642	C1qtnf4 (ENSMSIG00000027637)	Ndufs3 (ENSMSIG00000027630) #8	Kbtbd4 (ENSMSIG00000027623) #9	ENSMSIG00000027615 #10	Celf1 (ENSMSIG00000027572) #11	ENSMSIG00000027554	Rapsn (ENSMSIG00000027530) #12	Psmc3 (ENSMSIG00000027459) #15	Slc39a13 (ENSMSIG00000027429) #16	Spi1 (ENSMSIG00000027421) #17	Mybpc3 (ENSMSIG00000027308) #18	Madd (ENSMSIG00000021063) #19	Nr1h3 (ENSMSIG00000020950) #21	Acp2 (ENSMSIG00000020936) #22	Ddb2 (ENSMSIG00000020921) #23	Pacsin3 (ENSMSIG00000020892) #24	Arfgap2 (ENSMSIG00000020760) #25	ENSMSIG00000020727 #26	ENSMSIG00000020721	Lrp4 (ENSMSIG00000020667) #27	ENSMSIG00000020658	Ckap5 (ENSMSIG00000020211) #28	F2 (ENSMSIG00000020083) #29	Zfp408 (ENSMSIG00000020068)	Arhgap1 (ENSMSIG00000020000) #30	Atg13 (ENSMSIG00000019915) #31	Harbi1 (ENSMSIG00000019911) #32	Ambra1 (ENSMSIG00000019820) #33	Chrm4 (ENSMSIG00000019816) #34
Mouse	MODERN SPECIES	11	Fnbp4 (ENSMUSG00000008200)	Agbl2 (ENSMUSG00000040812)	Mtch2 (ENSMUSG00000027282)	C1qtnf4 (ENSMUSG00000040794)	Ndufs3 (ENSMUSG00000005510) #8	Kbtbd4 (ENSMUSG00000005505) #9	Ptpmt1 (ENSMUSG00000063235) #10	Celf1 (ENSMUSG00000005506) #11	Rapsn (ENSMUSG00000002104) #12	Psmc3 (ENSMUSG00000002102) #15	Slc39a13 (ENSMUSG00000002105) #16	Spi1 (ENSMUSG00000002111) #17	Mybpc3 (ENSMUSG00000002100) #18	Madd (ENSMUSG00000040687) #19	Nr1h3 (ENSMUSG00000002108) #21	Acp2 (ENSMUSG00000002103) #22	Ddb2 (ENSMUSG00000002109) #23	Pacsin3 (ENSMUSG00000027257) #24	Arfgap2 (ENSMUSG00000027255) #25	Cstpp1 (ENSMUSG00000040591) #26	Lrp4 (ENSMUSG00000027253) #27	Ckap5 (ENSMUSG00000040549) #28	F2 (ENSMUSG00000027249) #29	Zfp408 (ENSMUSG00000075040)	Arhgap1 (ENSMUSG00000027247) #30	Atg13 (ENSMUSG00000027244) #31	Harbi1 (ENSMUSG00000027243) #32	Ambra1 (ENSMUSG00000040506) #33	Chrm4 (ENSMUSG00000040495) #34	Mdk (ENSMUSG00000027239) #35	Dgkz (ENSMUSG00000040479) #36
Ryukyu mouse	MODERN SPECIES	11	Nup160 (MGP_CAROLIEiJ_G0023941)	Fnbp4 (MGP_CAROLIEiJ_G0023942)	Agbl2 (MGP_CAROLIEiJ_G0023943)	Mtch2 (MGP_CAROLIEiJ_G0023944)	Madd (MGP_CAROLIEiJ_G0023945) #19	C1qtnf4 (MGP_CAROLIEiJ_G0023946)	Ndufs3 (MGP_CAROLIEiJ_G0023947) #8	Kbtbd4 (MGP_CAROLIEiJ_G0023948) #9	Celf1 (MGP_CAROLIEiJ_G0023949) #11	Rapsn (MGP_CAROLIEiJ_G0023950) #12	Psmc3 (MGP_CAROLIEiJ_G0023951) #15	Slc39a13 (MGP_CAROLIEiJ_G0023952) #16	Spi1 (MGP_CAROLIEiJ_G0023953) #17	Mybpc3 (MGP_CAROLIEiJ_G0023954) #18	Nr1h3 (MGP_CAROLIEiJ_G0023955) #21	Acp2 (MGP_CAROLIEiJ_G0023956) #22	Ddb2 (MGP_CAROLIEiJ_G0023957) #23	Pacsin3 (MGP_CAROLIEiJ_G0023958) #24	Arfgap2 (MGP_CAROLIEiJ_G0023959) #25	Cstpp1 (MGP_CAROLIEiJ_G0023960) #26	MGP_CAROLIEiJ_G0023961	Lrp4 (MGP_CAROLIEiJ_G0023962) #27	Ckap5 (MGP_CAROLIEiJ_G0023963) #28	F2 (MGP_CAROLIEiJ_G0023964) #29	Zfp408 (MGP_CAROLIEiJ_G0023965)	Arhgap1 (MGP_CAROLIEiJ_G0023966) #30	Atg13 (MGP_CAROLIEiJ_G0023967) #31	Harbi1 (MGP_CAROLIEiJ_G0023968) #32	Ambra1 (MGP_CAROLIEiJ_G0023969) #33	Chrm4 (MGP_CAROLIEiJ_G0023970) #34	Mdk (MGP_CAROLIEiJ_G0023971) #35
Shrew mouse	MODERN SPECIES	16	Nup160 (MGP_PahariEiJ_G0025378)	Fnbp4 (MGP_PahariEiJ_G0025379)	Agbl2 (MGP_PahariEiJ_G0025380)	Mtch2 (MGP_PahariEiJ_G0025381)	C1qtnf4 (MGP_PahariEiJ_G0025382)	Ndufs3 (MGP_PahariEiJ_G0025383) #8	Kbtbd4 (MGP_PahariEiJ_G0025384) #9	Celf1 (MGP_PahariEiJ_G0025385) #11	Rapsn (MGP_PahariEiJ_G0025386) #12	Psmc3 (MGP_PahariEiJ_G0025387) #15	Slc39a13 (MGP_PahariEiJ_G0025388) #16	Spi1 (MGP_PahariEiJ_G0025389) #17	Mybpc3 (MGP_PahariEiJ_G0025390) #18	Madd (MGP_PahariEiJ_G0025391) #19	Nr1h3 (MGP_PahariEiJ_G0025392) #21	Acp2 (MGP_PahariEiJ_G0025393) #22	Ddb2 (MGP_PahariEiJ_G0025394) #23	Pacsin3 (MGP_PahariEiJ_G0025395) #24	Arfgap2 (MGP_PahariEiJ_G0025396) #25	Cstpp1 (MGP_PahariEiJ_G0025397) #26	MGP_PahariEiJ_G0025398	Lrp4 (MGP_PahariEiJ_G0025399) #27	Ckap5 (MGP_PahariEiJ_G0025400) #28	F2 (MGP_PahariEiJ_G0025401) #29	Zfp408 (MGP_PahariEiJ_G0025402)	Arhgap1 (MGP_PahariEiJ_G0025403) #30	Atg13 (MGP_PahariEiJ_G0025404) #31	Harbi1 (MGP_PahariEiJ_G0025405) #32	Ambra1 (MGP_PahariEiJ_G0025406) #33	Chrm4 (MGP_PahariEiJ_G0025407) #34	Mdk (MGP_PahariEiJ_G0025408) #35
Rat	MODERN SPECIES	13	Fnbp4 (ENSRNOG00000007241)	Agbl2 (ENSRNOG00000008467)	Mtch2 (ENSRNOG00000058658)	C1qtnf4 (ENSRNOG00000069579)	Ndufs3 (ENSRNOG00000009155) #8	Kbtbd4 (ENSRNOG00000009397) #9	Ptpmt1 (ENSRNOG00000009723) #10	Celf1 (ENSRNOG00000010379) #11	Rapsn (ENSRNOG00000011208) #12	Psmc3 (ENSRNOG00000011414) #15	Slc39a13 (ENSRNOG00000011981) #16	Spi1 (ENSRNOG00000012172) #17	Mybpc3 (ENSRNOG00000012307) #18	Madd (ENSRNOG00000012568) #19	Nr1h3 (ENSRNOG00000013172) #21	Acp2 (ENSRNOG00000013594) #22	Ddb2 (ENSRNOG00000014071) #23	Pacsin3 (ENSRNOG00000014204) #24	Arfgap2 (ENSRNOG00000014429) #25	Cstpp1 (ENSRNOG00000014798) #26	Lrp4 (ENSRNOG00000015285) #27	Ckap5 (ENSRNOG00000016067) #28	F2 (ENSRNOG00000016325) #29	ENSRNOG00000070459	Arhgap1 (ENSRNOG00000016610) #30	Atg13 (ENSRNOG00000016984) #31	Ambra1 (ENSRNOG00000017422) #33	Chrm4 (ENSRNOG00000017556) #34	Mdk (ENSRNOG00000017560) #35	Dgkz (ENSRNOG00000017737) #36	Creb3l1 (ENSRNOG00000005413)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1238	Agbl2 (ENSNGAG00000000234)	Mtch2 (ENSNGAG00000003094)	C1qtnf4 (ENSNGAG00000009680)	Ndufs3 (ENSNGAG00000012046) #8	Kbtbd4 (ENSNGAG00000000276) #9	Ptpmt1 (ENSNGAG00000017776) #10	ENSNGAG00000018260	Celf1 (ENSNGAG00000017390) #11	Rapsn (ENSNGAG00000007295) #12	Psmc3 (ENSNGAG00000017843) #15	Slc39a13 (ENSNGAG00000017536) #16	Spi1 (ENSNGAG00000010713) #17	Mybpc3 (ENSNGAG00000000260) #18	Madd (ENSNGAG00000017768) #19	Nr1h3 (ENSNGAG00000015402) #21	Acp2 (ENSNGAG00000007455) #22	Ddb2 (ENSNGAG00000017336) #23	Pacsin3 (ENSNGAG00000014205) #24	Arfgap2 (ENSNGAG00000009124) #25	Cstpp1 (ENSNGAG00000000171) #26	Lrp4 (ENSNGAG00000020436) #27	Ckap5 (ENSNGAG00000001579) #28	F2 (ENSNGAG00000010351) #29	Zfp408 (ENSNGAG00000000309)	Arhgap1 (ENSNGAG00000013969) #30	Atg13 (ENSNGAG00000015785) #31	ENSNGAG00000012504
Lesser Egyptian jerboa	MODERN SPECIES	62	Nup160 (ENSJJAG00000020091)	Fnbp4 (ENSJJAG00000009203)	Agbl2 (ENSJJAG00000022894)	Mtch2 (ENSJJAG00000011880)	C1qtnf4 (ENSJJAG00000023278)	Ndufs3 (ENSJJAG00000023557) #8	Kbtbd4 (ENSJJAG00000020543) #9	Celf1 (ENSJJAG00000020280) #11	Rapsn (ENSJJAG00000020297) #12	Psmc3 (ENSJJAG00000021354) #15	Slc39a13 (ENSJJAG00000007370) #16	Spi1 (ENSJJAG00000019221) #17	Mybpc3 (ENSJJAG00000018706) #18	Madd (ENSJJAG00000015606) #19	Nr1h3 (ENSJJAG00000020697) #21	Acp2 (ENSJJAG00000019515) #22	Ddb2 (ENSJJAG00000016552) #23	Pacsin3 (ENSJJAG00000023252) #24	Arfgap2 (ENSJJAG00000003129) #25	Cstpp1 (ENSJJAG00000008330) #26	Lrp4 (ENSJJAG00000014851) #27	Ckap5 (ENSJJAG00000023265) #28	F2 (ENSJJAG00000005619) #29	Zfp408 (ENSJJAG00000015381)	Arhgap1 (ENSJJAG00000022610) #30	Atg13 (ENSJJAG00000024173) #31	ENSJJAG00000015195	ENSJJAG00000016975	Ambra1 (ENSJJAG00000004138) #33	Chrm4 (ENSJJAG00000010466) #34	Mdk (ENSJJAG00000023305) #35
Kangaroo rat	MODERN SPECIES	444	Nup160 (ENSDORG00000004246)	Fnbp4 (ENSDORG00000004245)	Agbl2 (ENSDORG00000025903)	Mtch2 (ENSDORG00000001511)	C1qtnf4 (ENSDORG00000015597)	Kbtbd4 (ENSDORG00000015593) #9	Ptpmt1 (ENSDORG00000015591) #10	Celf1 (ENSDORG00000013721) #11	Rapsn (ENSDORG00000000757) #12	Psmc3 (ENSDORG00000000756) #15	Slc39a13 (ENSDORG00000000753) #16	Spi1 (ENSDORG00000007758) #17	Mybpc3 (ENSDORG00000007751) #18	Madd (ENSDORG00000007749) #19	Nr1h3 (ENSDORG00000007747) #21	Acp2 (ENSDORG00000007743) #22	Ddb2 (ENSDORG00000007741) #23	ENSDORG00000013060 #24	Arfgap2 (ENSDORG00000013057) #25	Cstpp1 (ENSDORG00000013052) #26	Lrp4 (ENSDORG00000001785) #27	Ckap5 (ENSDORG00000011373) #28	F2 (ENSDORG00000029579) #29	Zfp408 (ENSDORG00000000387)	Arhgap1 (ENSDORG00000000385) #30	Atg13 (ENSDORG00000000382) #31	ENSDORG00000028941	Ambra1 (ENSDORG00000008382) #33	Chrm4 (ENSDORG00000024984) #34	Mdk (ENSDORG00000029447) #35	Dgkz (ENSDORG00000008377) #36