Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000160201 #9	ENSGT00390000000020.b #10	ENSGT00940000161832.a #11	ENSGT00940000154479.a	ENSGT00390000017480 #12	ENSGT00940000158775 #13	ENSGT00390000014065	ENSGT00940000158970 #14	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062 #30	ENSGT00940000160630 #31	ENSGT00390000007055 #32	ENSGT00940000154348.c.b.a	ENSGT00390000016223 #35	ENSGT00940000160394.a #36	ENSGT00390000007640.b #37
Glires	ANCESTRAL SPECIES	1	ENSGT00940000160201 #9	ENSGT00390000000020.b #10	ENSGT00940000161832.a #11	ENSGT00940000154479.a	ENSGT00390000017480 #12	ENSGT00940000158775 #13	ENSGT00390000014065	ENSGT00940000158970 #14	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062 #30	ENSGT00940000160630 #31	ENSGT00390000007055 #32	ENSGT00940000154348.c.b.a	ENSGT00390000016223 #35	ENSGT00940000160394.a #36	ENSGT00390000007640.b #37
Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000160201 #9	ENSGT00390000000020.b #10	ENSGT00940000161832.a #11	ENSGT00940000154479.a	ENSGT00390000017480 #12	ENSGT00940000158775 #13	ENSGT00390000014065	ENSGT00940000158970 #14	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062 #30	ENSGT00940000160630 #31	ENSGT00390000007055 #32	ENSGT00940000154348.c.b.a	ENSGT00390000016223 #35	ENSGT00940000160394.a #36	ENSGT00390000007640.b #37
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00390000003450 #8	ENSGT00940000160201 #9	ENSGT00390000000020.b #10	ENSGT00940000161832.a #11	ENSGT00390000017480 #12	ENSGT00940000158775 #13	ENSGT00390000014065	ENSGT00940000158970 #14	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062 #30	ENSGT00940000160630 #31	ENSGT00390000007055 #32	ENSGT00940000154348.c.b.a	ENSGT00390000016223 #35	ENSGT00940000160394.a #36	ENSGT00390000007640.b #37
Myomorpha	ANCESTRAL SPECIES	4	ENSGT00390000003450 #8	ENSGT00940000160201 #9	ENSGT00390000000020.b #10	ENSGT00940000161832.a #11	ENSGT00390000017480 #12	ENSGT00940000158775 #13	ENSGT00390000014065	ENSGT00940000158970 #14	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062 #30	ENSGT00940000160630 #31	ENSGT00390000007055 #32	ENSGT00940000154348.c.b.a	ENSGT00390000016223 #35	ENSGT00940000160394.a #36	ENSGT00390000007640.b #37
Lesser Egyptian jerboa	MODERN SPECIES	62	Nup160 (ENSJJAG00000020091) #7	Fnbp4 (ENSJJAG00000009203) #8	Agbl2 (ENSJJAG00000022894) #9	Mtch2 (ENSJJAG00000011880) #10	C1qtnf4 (ENSJJAG00000023278) #11	Ndufs3 (ENSJJAG00000023557) #12	Kbtbd4 (ENSJJAG00000020543) #13	Celf1 (ENSJJAG00000020280) #14	Rapsn (ENSJJAG00000020297) #15	Psmc3 (ENSJJAG00000021354) #16	Slc39a13 (ENSJJAG00000007370) #17	Spi1 (ENSJJAG00000019221) #18	Mybpc3 (ENSJJAG00000018706) #19	Madd (ENSJJAG00000015606) #20	Nr1h3 (ENSJJAG00000020697) #21	Acp2 (ENSJJAG00000019515) #22	Ddb2 (ENSJJAG00000016552) #23	Pacsin3 (ENSJJAG00000023252) #24	Arfgap2 (ENSJJAG00000003129) #25	Cstpp1 (ENSJJAG00000008330) #26	Lrp4 (ENSJJAG00000014851) #27	Ckap5 (ENSJJAG00000023265) #28	F2 (ENSJJAG00000005619) #29	Zfp408 (ENSJJAG00000015381) #30	Arhgap1 (ENSJJAG00000022610) #31	Atg13 (ENSJJAG00000024173) #32	ENSJJAG00000015195 #33	ENSJJAG00000016975 #34	Ambra1 (ENSJJAG00000004138) #35	Chrm4 (ENSJJAG00000010466) #36	Mdk (ENSJJAG00000023305) #37
Muroidea	ANCESTRAL SPECIES	2	ENSGT00390000003450 #8	ENSGT00940000160201 #9	ENSGT00390000000020.b #10	ENSGT00940000161832.a #11	ENSGT00390000017480 #12	ENSGT00940000158775 #13	ENSGT00390000014065	ENSGT00940000158970 #14	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062 #30	ENSGT00940000160630 #31	ENSGT00390000007055 #32	ENSGT00940000154348.c.b.a	ENSGT00390000016223 #35	ENSGT00940000160394.a #36	ENSGT00390000007640.b #37
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00390000003450 #8	ENSGT00940000160201 #9	ENSGT00390000000020.b #10	ENSGT00940000161832.a #11	ENSGT00390000017480 #12	ENSGT00940000158775 #13	ENSGT00390000014065	ENSGT00940000158970 #14	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062 #30	ENSGT00940000160630 #31	ENSGT00390000007055 #32	ENSGT00940000154348.c.b.a	ENSGT00390000016223 #35	ENSGT00940000160394.a #36	ENSGT00390000007640.b #37
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00390000003450 #8	ENSGT00940000160201 #9	ENSGT00390000000020.b #10	ENSGT00940000161832.a #11	ENSGT00390000017480 #12	ENSGT00940000158775 #13	ENSGT00390000014065	ENSGT00940000158970 #14	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062 #30	ENSGT00940000160630 #31	ENSGT00390000007055 #32	ENSGT00940000154348.c.b.a	ENSGT00390000016223 #35	ENSGT00940000160394.a #36	ENSGT00390000007640.b #37	ENSGT00940000156152
Cricetidae_B	ANCESTRAL SPECIES	34	ENSGT00390000003450 #8	ENSGT00940000160201 #9	ENSGT00390000000020.b #10	ENSGT00940000161832.a #11	ENSGT00390000017480 #12	ENSGT00940000158775 #13	ENSGT00390000014065	ENSGT00940000158970 #14	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062 #30	ENSGT00940000160630 #31	ENSGT00390000007055 #32	ENSGT00940000154348.c.b.a	ENSGT00390000016223 #35	ENSGT00940000160394.a #36	ENSGT00390000007640.b #37	ENSGT00940000156152
Northern American deer mouse	MODERN SPECIES	17	Nup160 (ENSPEMG00000018101) #7	Fnbp4 (ENSPEMG00000016688) #8	Agbl2 (ENSPEMG00000001437) #9	Mtch2 (ENSPEMG00000010063) #10	C1qtnf4 (ENSPEMG00000024602) #11	Ndufs3 (ENSPEMG00000007248) #12	Kbtbd4 (ENSPEMG00000001992) #13	Ptpmt1 (ENSPEMG00000030250)	Celf1 (ENSPEMG00000015644) #14	Rapsn (ENSPEMG00000016952) #15	Slc39a13 (ENSPEMG00000016290) #17	Spi1 (ENSPEMG00000009647) #18	Mybpc3 (ENSPEMG00000009479) #19	Madd (ENSPEMG00000001264) #20	Nr1h3 (ENSPEMG00000018824) #21	Acp2 (ENSPEMG00000011860) #22	Ddb2 (ENSPEMG00000012899) #23	Pacsin3 (ENSPEMG00000018424) #24	Arfgap2 (ENSPEMG00000009220) #25	Cstpp1 (ENSPEMG00000018931) #26	Lrp4 (ENSPEMG00000015598) #27	Ckap5 (ENSPEMG00000007231) #28	F2 (ENSPEMG00000018118) #29	Zfp408 (ENSPEMG00000016757) #30	Arhgap1 (ENSPEMG00000011370) #31	Atg13 (ENSPEMG00000017021) #32	Harbi1 (ENSPEMG00000013606)	ENSPEMG00000025318	Ambra1 (ENSPEMG00000005111) #35	Chrm4 (ENSPEMG00000028345) #36	Mdk (ENSPEMG00000014123) #37
Prairie vole	MODERN SPECIES	81	Agbl2 (ENSMOCG00000015547) #9	Mtch2 (ENSMOCG00000001577) #10	C1qtnf4 (ENSMOCG00000013500) #11	Ndufs3 (ENSMOCG00000009375) #12	Kbtbd4 (ENSMOCG00000021780) #13	Ptpmt1 (ENSMOCG00000018913)	Celf1 (ENSMOCG00000012633) #14	Rapsn (ENSMOCG00000012267) #15	Psmc3 (ENSMOCG00000001464) #16	ENSMOCG00000006097 #17	ENSMOCG00000008195 #17	Spi1 (ENSMOCG00000006114) #18	Mybpc3 (ENSMOCG00000008344) #19	Madd (ENSMOCG00000003278) #20	Nr1h3 (ENSMOCG00000010671) #21	Acp2 (ENSMOCG00000002882) #22	Ddb2 (ENSMOCG00000021291) #23	Pacsin3 (ENSMOCG00000022577) #24	Arfgap2 (ENSMOCG00000016700) #25	Cstpp1 (ENSMOCG00000006672) #26	Lrp4 (ENSMOCG00000005823) #27	Ckap5 (ENSMOCG00000022214) #28	F2 (ENSMOCG00000019585) #29	Arhgap1 (ENSMOCG00000008533) #31	Atg13 (ENSMOCG00000018209) #32	ENSMOCG00000007253	Ambra1 (ENSMOCG00000018792) #35	Chrm4 (ENSMOCG00000016103) #36	Mdk (ENSMOCG00000014474) #37	Dgkz (ENSMOCG00000000694)	Creb3l1 (ENSMOCG00000012802)
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00390000003450 #8	ENSGT00940000160201 #9	ENSGT00390000000020.b #10	ENSGT00940000161832.a #11	ENSGT00390000017480 #12	ENSGT00940000158775 #13	ENSGT00390000014065	ENSGT00940000158970 #14	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062 #30	ENSGT00940000160630 #31	ENSGT00390000007055 #32	ENSGT00940000154348.c.b.a	ENSGT00390000016223 #35	ENSGT00940000160394.a #36	ENSGT00390000007640.b #37	ENSGT00940000156152
Chinese hamster chok1gshd	MODERN SPECIES	188	Fnbp4 (ENSCGRG00001022832) #8	Agbl2 (ENSCGRG00001000549) #9	Mtch2 (ENSCGRG00001024807) #10	C1qtnf4 (ENSCGRG00001007540) #11	Ndufs3 (ENSCGRG00001024136) #12	Kbtbd4 (ENSCGRG00001023919) #13	Ptpmt1 (ENSCGRG00001012152)	Celf1 (ENSCGRG00001011274) #14	Rapsn (ENSCGRG00001009650) #15	Psmc3 (ENSCGRG00001005657) #16	Slc39a13 (ENSCGRG00001003447) #17	Spi1 (ENSCGRG00001009684) #18	Mybpc3 (ENSCGRG00001006702) #19	Madd (ENSCGRG00001024681) #20	Nr1h3 (ENSCGRG00001022656) #21	Acp2 (ENSCGRG00001022138) #22	Ddb2 (ENSCGRG00001012939) #23	Pacsin3 (ENSCGRG00001011840) #24	Arfgap2 (ENSCGRG00001010700) #25	Cstpp1 (ENSCGRG00001020042) #26	Lrp4 (ENSCGRG00001018783) #27	Ckap5 (ENSCGRG00001013368) #28	F2 (ENSCGRG00001023426) #29	Zfp408 (ENSCGRG00001023588) #30	Arhgap1 (ENSCGRG00001023260) #31	ENSCGRG00001022859	Atg13 (ENSCGRG00001022112) #32	Harbi1 (ENSCGRG00001021313)	Ambra1 (ENSCGRG00001020313) #35	Chrm4 (ENSCGRG00001012019) #36	Mdk (ENSCGRG00001022566) #37
Golden Hamster	MODERN SPECIES	618	Nup160 (ENSMAUG00000009877) #7	Agbl2 (ENSMAUG00000013242) #9	Mtch2 (ENSMAUG00000009619) #10	C1qtnf4 (ENSMAUG00000009128) #11	Ndufs3 (ENSMAUG00000010036) #12	Kbtbd4 (ENSMAUG00000009694) #13	Ptpmt1 (ENSMAUG00000010436)	Celf1 (ENSMAUG00000009468) #14	Rapsn (ENSMAUG00000008690) #15	Psmc3 (ENSMAUG00000007346) #16	ENSMAUG00000009110 #17	Spi1 (ENSMAUG00000008854) #18	Mybpc3 (ENSMAUG00000008229) #19	Madd (ENSMAUG00000009156) #20	Nr1h3 (ENSMAUG00000008657) #21	Acp2 (ENSMAUG00000007767) #22	Ddb2 (ENSMAUG00000010179) #23	Pacsin3 (ENSMAUG00000009572) #24	Arfgap2 (ENSMAUG00000009218) #25	ENSMAUG00000008870	ENSMAUG00000008742	Cstpp1 (ENSMAUG00000008635) #26	Lrp4 (ENSMAUG00000016435) #27	Ckap5 (ENSMAUG00000012944) #28	F2 (ENSMAUG00000009414) #29	Arhgap1 (ENSMAUG00000012048) #31	Atg13 (ENSMAUG00000011052) #32	Harbi1 (ENSMAUG00000012193)	Ambra1 (ENSMAUG00000008821) #35	Chrm4 (ENSMAUG00000007510) #36	Mdk (ENSMAUG00000006759) #37
Murinae	ANCESTRAL SPECIES	1	ENSGT00390000003450 #8	ENSGT00940000160201 #9	ENSGT00390000000020.b #10	ENSGT00940000161832.a #11	ENSGT00390000017480 #12	ENSGT00940000158775 #13	ENSGT00390000014065	ENSGT00940000158970 #14	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062 #30	ENSGT00940000160630 #31	ENSGT00390000007055 #32	ENSGT00940000154348.c.b.a	ENSGT00390000016223 #35	ENSGT00940000160394.a #36	ENSGT00390000007640.b #37
Mus	ANCESTRAL SPECIES	1	ENSGT00390000003450 #8	ENSGT00940000160201 #9	ENSGT00390000000020.b #10	ENSGT00940000161832.a #11	ENSGT00390000017480 #12	ENSGT00940000158775 #13	ENSGT00390000014065	ENSGT00940000158970 #14	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062 #30	ENSGT00940000160630 #31	ENSGT00390000007055 #32	ENSGT00940000154348.c.b.a	ENSGT00390000016223 #35	ENSGT00940000160394.a #36	ENSGT00390000007640.b #37
Mus_A	ANCESTRAL SPECIES		ENSGT00390000003450 #8	ENSGT00940000160201 #9	ENSGT00390000000020.b #10	ENSGT00940000161832.a #11	ENSGT00390000017480 #12	ENSGT00940000158775 #13	ENSGT00390000014065	ENSGT00940000158970 #14	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062 #30	ENSGT00940000160630 #31	ENSGT00390000007055 #32	ENSGT00940000154348.c.b.a	ENSGT00390000016223 #35	ENSGT00940000160394.a #36	ENSGT00390000007640.b.g #37
Mus_B	ANCESTRAL SPECIES	1	ENSGT00390000003450 #8	ENSGT00940000160201 #9	ENSGT00390000000020.b #10	ENSGT00940000161832.a #11	ENSGT00390000017480 #12	ENSGT00940000158775 #13	ENSGT00390000014065	ENSGT00940000158970 #14	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062 #30	ENSGT00940000160630 #31	ENSGT00390000007055 #32	ENSGT00940000154348.c.b.a	ENSGT00390000016223 #35	ENSGT00940000160394.a #36	ENSGT00390000007640.b.g #37
Mus_C	ANCESTRAL SPECIES		ENSGT00390000003450 #8	ENSGT00940000160201 #9	ENSGT00390000000020.b #10	ENSGT00940000161832.a #11	ENSGT00390000017480 #12	ENSGT00940000158775 #13	ENSGT00390000014065	ENSGT00940000158970 #14	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062 #30	ENSGT00940000160630 #31	ENSGT00390000007055 #32	ENSGT00940000154348.c.b.a	ENSGT00390000016223 #35	ENSGT00940000160394.a #36	ENSGT00390000007640.b.g #37
spretus	MODERN SPECIES	11	Nup160 (MGP_SPRETEiJ_G0024852) #7	Fnbp4 (MGP_SPRETEiJ_G0024853) #8	Agbl2 (MGP_SPRETEiJ_G0024854) #9	Mtch2 (MGP_SPRETEiJ_G0024855) #10	C1qtnf4 (MGP_SPRETEiJ_G0024856) #11	Ndufs3 (MGP_SPRETEiJ_G0024857) #12	Kbtbd4 (MGP_SPRETEiJ_G0024858) #13	Celf1 (MGP_SPRETEiJ_G0024859) #14	Rapsn (MGP_SPRETEiJ_G0024860) #15	Psmc3 (MGP_SPRETEiJ_G0024861) #16	Slc39a13 (MGP_SPRETEiJ_G0024862) #17	Spi1 (MGP_SPRETEiJ_G0024863) #18	Mybpc3 (MGP_SPRETEiJ_G0024864) #19	Madd (MGP_SPRETEiJ_G0024865) #20	Nr1h3 (MGP_SPRETEiJ_G0024866) #21	Acp2 (MGP_SPRETEiJ_G0024867) #22	Ddb2 (MGP_SPRETEiJ_G0024868) #23	Pacsin3 (MGP_SPRETEiJ_G0024869) #24	Arfgap2 (MGP_SPRETEiJ_G0024870) #25	Cstpp1 (MGP_SPRETEiJ_G0024871) #26	Lrp4 (MGP_SPRETEiJ_G0024872) #27	Ckap5 (MGP_SPRETEiJ_G0024873) #28	F2 (MGP_SPRETEiJ_G0024874) #29	Zfp408 (MGP_SPRETEiJ_G0024875) #30	Arhgap1 (MGP_SPRETEiJ_G0024876) #31	Atg13 (MGP_SPRETEiJ_G0024877) #32	Harbi1 (MGP_SPRETEiJ_G0024878)	Ambra1 (MGP_SPRETEiJ_G0024879) #35	Chrm4 (MGP_SPRETEiJ_G0024880) #36	Mdk (MGP_SPRETEiJ_G0024881) #37	Dgkz (MGP_SPRETEiJ_G0024882)
Steppe mouse	MODERN SPECIES	36	Agbl2 (ENSMSIG00000027703) #9	ENSMSIG00000027642 #10	C1qtnf4 (ENSMSIG00000027637) #11	Ndufs3 (ENSMSIG00000027630) #12	Kbtbd4 (ENSMSIG00000027623) #13	ENSMSIG00000027615	Celf1 (ENSMSIG00000027572) #14	ENSMSIG00000027554	Rapsn (ENSMSIG00000027530) #15	Psmc3 (ENSMSIG00000027459) #16	Slc39a13 (ENSMSIG00000027429) #17	Spi1 (ENSMSIG00000027421) #18	Mybpc3 (ENSMSIG00000027308) #19	Madd (ENSMSIG00000021063) #20	Nr1h3 (ENSMSIG00000020950) #21	Acp2 (ENSMSIG00000020936) #22	Ddb2 (ENSMSIG00000020921) #23	Pacsin3 (ENSMSIG00000020892) #24	Arfgap2 (ENSMSIG00000020760) #25	ENSMSIG00000020727 #26	ENSMSIG00000020721	Lrp4 (ENSMSIG00000020667) #27	ENSMSIG00000020658	Ckap5 (ENSMSIG00000020211) #28	F2 (ENSMSIG00000020083) #29	Zfp408 (ENSMSIG00000020068) #30	Arhgap1 (ENSMSIG00000020000) #31	Atg13 (ENSMSIG00000019915) #32	Harbi1 (ENSMSIG00000019911)	Ambra1 (ENSMSIG00000019820) #35	Chrm4 (ENSMSIG00000019816) #36
Mouse	MODERN SPECIES	11	Fnbp4 (ENSMUSG00000008200) #8	Agbl2 (ENSMUSG00000040812) #9	Mtch2 (ENSMUSG00000027282) #10	C1qtnf4 (ENSMUSG00000040794) #11	Ndufs3 (ENSMUSG00000005510) #12	Kbtbd4 (ENSMUSG00000005505) #13	Ptpmt1 (ENSMUSG00000063235)	Celf1 (ENSMUSG00000005506) #14	Rapsn (ENSMUSG00000002104) #15	Psmc3 (ENSMUSG00000002102) #16	Slc39a13 (ENSMUSG00000002105) #17	Spi1 (ENSMUSG00000002111) #18	Mybpc3 (ENSMUSG00000002100) #19	Madd (ENSMUSG00000040687) #20	Nr1h3 (ENSMUSG00000002108) #21	Acp2 (ENSMUSG00000002103) #22	Ddb2 (ENSMUSG00000002109) #23	Pacsin3 (ENSMUSG00000027257) #24	Arfgap2 (ENSMUSG00000027255) #25	Cstpp1 (ENSMUSG00000040591) #26	Lrp4 (ENSMUSG00000027253) #27	Ckap5 (ENSMUSG00000040549) #28	F2 (ENSMUSG00000027249) #29	Zfp408 (ENSMUSG00000075040) #30	Arhgap1 (ENSMUSG00000027247) #31	Atg13 (ENSMUSG00000027244) #32	Harbi1 (ENSMUSG00000027243)	Ambra1 (ENSMUSG00000040506) #35	Chrm4 (ENSMUSG00000040495) #36	Mdk (ENSMUSG00000027239) #37	Dgkz (ENSMUSG00000040479)
Ryukyu mouse	MODERN SPECIES	11	Nup160 (MGP_CAROLIEiJ_G0023941) #7	Fnbp4 (MGP_CAROLIEiJ_G0023942) #8	Agbl2 (MGP_CAROLIEiJ_G0023943) #9	Mtch2 (MGP_CAROLIEiJ_G0023944) #10	Madd (MGP_CAROLIEiJ_G0023945) #20	C1qtnf4 (MGP_CAROLIEiJ_G0023946) #11	Ndufs3 (MGP_CAROLIEiJ_G0023947) #12	Kbtbd4 (MGP_CAROLIEiJ_G0023948) #13	Celf1 (MGP_CAROLIEiJ_G0023949) #14	Rapsn (MGP_CAROLIEiJ_G0023950) #15	Psmc3 (MGP_CAROLIEiJ_G0023951) #16	Slc39a13 (MGP_CAROLIEiJ_G0023952) #17	Spi1 (MGP_CAROLIEiJ_G0023953) #18	Mybpc3 (MGP_CAROLIEiJ_G0023954) #19	Nr1h3 (MGP_CAROLIEiJ_G0023955) #21	Acp2 (MGP_CAROLIEiJ_G0023956) #22	Ddb2 (MGP_CAROLIEiJ_G0023957) #23	Pacsin3 (MGP_CAROLIEiJ_G0023958) #24	Arfgap2 (MGP_CAROLIEiJ_G0023959) #25	Cstpp1 (MGP_CAROLIEiJ_G0023960) #26	MGP_CAROLIEiJ_G0023961	Lrp4 (MGP_CAROLIEiJ_G0023962) #27	Ckap5 (MGP_CAROLIEiJ_G0023963) #28	F2 (MGP_CAROLIEiJ_G0023964) #29	Zfp408 (MGP_CAROLIEiJ_G0023965) #30	Arhgap1 (MGP_CAROLIEiJ_G0023966) #31	Atg13 (MGP_CAROLIEiJ_G0023967) #32	Harbi1 (MGP_CAROLIEiJ_G0023968)	Ambra1 (MGP_CAROLIEiJ_G0023969) #35	Chrm4 (MGP_CAROLIEiJ_G0023970) #36	Mdk (MGP_CAROLIEiJ_G0023971) #37
Shrew mouse	MODERN SPECIES	16	Nup160 (MGP_PahariEiJ_G0025378) #7	Fnbp4 (MGP_PahariEiJ_G0025379) #8	Agbl2 (MGP_PahariEiJ_G0025380) #9	Mtch2 (MGP_PahariEiJ_G0025381) #10	C1qtnf4 (MGP_PahariEiJ_G0025382) #11	Ndufs3 (MGP_PahariEiJ_G0025383) #12	Kbtbd4 (MGP_PahariEiJ_G0025384) #13	Celf1 (MGP_PahariEiJ_G0025385) #14	Rapsn (MGP_PahariEiJ_G0025386) #15	Psmc3 (MGP_PahariEiJ_G0025387) #16	Slc39a13 (MGP_PahariEiJ_G0025388) #17	Spi1 (MGP_PahariEiJ_G0025389) #18	Mybpc3 (MGP_PahariEiJ_G0025390) #19	Madd (MGP_PahariEiJ_G0025391) #20	Nr1h3 (MGP_PahariEiJ_G0025392) #21	Acp2 (MGP_PahariEiJ_G0025393) #22	Ddb2 (MGP_PahariEiJ_G0025394) #23	Pacsin3 (MGP_PahariEiJ_G0025395) #24	Arfgap2 (MGP_PahariEiJ_G0025396) #25	Cstpp1 (MGP_PahariEiJ_G0025397) #26	MGP_PahariEiJ_G0025398	Lrp4 (MGP_PahariEiJ_G0025399) #27	Ckap5 (MGP_PahariEiJ_G0025400) #28	F2 (MGP_PahariEiJ_G0025401) #29	Zfp408 (MGP_PahariEiJ_G0025402) #30	Arhgap1 (MGP_PahariEiJ_G0025403) #31	Atg13 (MGP_PahariEiJ_G0025404) #32	Harbi1 (MGP_PahariEiJ_G0025405)	Ambra1 (MGP_PahariEiJ_G0025406) #35	Chrm4 (MGP_PahariEiJ_G0025407) #36	Mdk (MGP_PahariEiJ_G0025408) #37
Rat	MODERN SPECIES	13	Fnbp4 (ENSRNOG00000007241) #8	Agbl2 (ENSRNOG00000008467) #9	Mtch2 (ENSRNOG00000058658) #10	C1qtnf4 (ENSRNOG00000069579) #11	Ndufs3 (ENSRNOG00000009155) #12	Kbtbd4 (ENSRNOG00000009397) #13	Ptpmt1 (ENSRNOG00000009723)	Celf1 (ENSRNOG00000010379) #14	Rapsn (ENSRNOG00000011208) #15	Psmc3 (ENSRNOG00000011414) #16	Slc39a13 (ENSRNOG00000011981) #17	Spi1 (ENSRNOG00000012172) #18	Mybpc3 (ENSRNOG00000012307) #19	Madd (ENSRNOG00000012568) #20	Nr1h3 (ENSRNOG00000013172) #21	Acp2 (ENSRNOG00000013594) #22	Ddb2 (ENSRNOG00000014071) #23	Pacsin3 (ENSRNOG00000014204) #24	Arfgap2 (ENSRNOG00000014429) #25	Cstpp1 (ENSRNOG00000014798) #26	Lrp4 (ENSRNOG00000015285) #27	Ckap5 (ENSRNOG00000016067) #28	F2 (ENSRNOG00000016325) #29	ENSRNOG00000070459 #30	Arhgap1 (ENSRNOG00000016610) #31	Atg13 (ENSRNOG00000016984) #32	Ambra1 (ENSRNOG00000017422) #35	Chrm4 (ENSRNOG00000017556) #36	Mdk (ENSRNOG00000017560) #37	Dgkz (ENSRNOG00000017737)	Creb3l1 (ENSRNOG00000005413)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1238	Agbl2 (ENSNGAG00000000234) #9	Mtch2 (ENSNGAG00000003094) #10	C1qtnf4 (ENSNGAG00000009680) #11	Ndufs3 (ENSNGAG00000012046) #12	Kbtbd4 (ENSNGAG00000000276) #13	Ptpmt1 (ENSNGAG00000017776)	ENSNGAG00000018260	Celf1 (ENSNGAG00000017390) #14	Rapsn (ENSNGAG00000007295) #15	Psmc3 (ENSNGAG00000017843) #16	Slc39a13 (ENSNGAG00000017536) #17	Spi1 (ENSNGAG00000010713) #18	Mybpc3 (ENSNGAG00000000260) #19	Madd (ENSNGAG00000017768) #20	Nr1h3 (ENSNGAG00000015402) #21	Acp2 (ENSNGAG00000007455) #22	Ddb2 (ENSNGAG00000017336) #23	Pacsin3 (ENSNGAG00000014205) #24	Arfgap2 (ENSNGAG00000009124) #25	Cstpp1 (ENSNGAG00000000171) #26	Lrp4 (ENSNGAG00000020436) #27	Ckap5 (ENSNGAG00000001579) #28	F2 (ENSNGAG00000010351) #29	Zfp408 (ENSNGAG00000000309) #30	Arhgap1 (ENSNGAG00000013969) #31	Atg13 (ENSNGAG00000015785) #32	ENSNGAG00000012504 #33
Kangaroo rat	MODERN SPECIES	444	Nup160 (ENSDORG00000004246) #7	Fnbp4 (ENSDORG00000004245) #8	Agbl2 (ENSDORG00000025903) #9	Mtch2 (ENSDORG00000001511) #10	C1qtnf4 (ENSDORG00000015597) #11	Kbtbd4 (ENSDORG00000015593) #13	Ptpmt1 (ENSDORG00000015591)	Celf1 (ENSDORG00000013721) #14	Rapsn (ENSDORG00000000757) #15	Psmc3 (ENSDORG00000000756) #16	Slc39a13 (ENSDORG00000000753) #17	Spi1 (ENSDORG00000007758) #18	Mybpc3 (ENSDORG00000007751) #19	Madd (ENSDORG00000007749) #20	Nr1h3 (ENSDORG00000007747) #21	Acp2 (ENSDORG00000007743) #22	Ddb2 (ENSDORG00000007741) #23	ENSDORG00000013060 #24	Arfgap2 (ENSDORG00000013057) #25	Cstpp1 (ENSDORG00000013052) #26	Lrp4 (ENSDORG00000001785) #27	Ckap5 (ENSDORG00000011373) #28	F2 (ENSDORG00000029579) #29	Zfp408 (ENSDORG00000000387) #30	Arhgap1 (ENSDORG00000000385) #31	Atg13 (ENSDORG00000000382) #32	ENSDORG00000028941	Ambra1 (ENSDORG00000008382) #35	Chrm4 (ENSDORG00000024984) #36	Mdk (ENSDORG00000029447) #37	Dgkz (ENSDORG00000008377)
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000160201 #9	ENSGT00390000000020.b #10	ENSGT00940000161832.a #11	ENSGT00940000154479.a	ENSGT00390000017480 #12	ENSGT00940000158775 #13	ENSGT00390000014065	ENSGT00940000158970 #14	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062 #30	ENSGT00940000160630 #31	ENSGT00390000007055 #32	ENSGT00940000154348.c.b.a	ENSGT00390000016223 #35	ENSGT00940000160394.a #36	ENSGT00390000007640.b #37	ENSGT00940000156152
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00940000160201 #9	ENSGT00390000000020.b #10	ENSGT00940000161832.a #11	ENSGT00940000154479.a	ENSGT00390000017480 #12	ENSGT00940000158775 #13	ENSGT00390000014065	ENSGT00940000158970 #14	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062 #30	ENSGT00940000160630 #31	ENSGT00390000007055 #32	ENSGT00940000154348.c.b.a	ENSGT00390000016223 #35	ENSGT00940000160394.a #36	ENSGT00390000007640.b #37	ENSGT00940000156152
Marmotini	ANCESTRAL SPECIES	22	ENSGT00940000160201 #9	ENSGT00390000000020.b.e #10	ENSGT00940000161832.a #11	ENSGT00940000154479.a	ENSGT00390000017480 #12	ENSGT00940000158775 #13	ENSGT00390000014065	ENSGT00940000158970 #14	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062 #30	ENSGT00940000160630 #31	ENSGT00390000007055 #32	ENSGT00940000154348.c.b.a	ENSGT00390000016223 #35	ENSGT00940000160394.a #36	ENSGT00390000007640.b #37	ENSGT00940000156152
Marmotini_b	ANCESTRAL SPECIES	23	ENSGT00940000160201 #9	ENSGT00390000000020.b.e #10	ENSGT00940000161832.a #11	ENSGT00940000154479.a	ENSGT00390000017480 #12	ENSGT00940000158775 #13	ENSGT00390000014065	ENSGT00940000158970 #14	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00930000151062 #30	ENSGT00940000160630 #31	ENSGT00390000007055 #32	ENSGT00940000154348.c.b.a	ENSGT00390000016223 #35	ENSGT00940000160394.a #36	ENSGT00390000007640.b #37	ENSGT00940000156152
Arctic ground squirrel	MODERN SPECIES	208	MTCH2 (ENSUPAG00010014096) #10	C1QTNF4 (ENSUPAG00010014090) #11	FAM180B (ENSUPAG00010014076)	NDUFS3 (ENSUPAG00010014067) #12	KBTBD4 (ENSUPAG00010014056) #13	ENSUPAG00010014045	CELF1 (ENSUPAG00010013973) #14	RAPSN (ENSUPAG00010013926) #15	PSMC3 (ENSUPAG00010013908) #16	SLC39A13 (ENSUPAG00010013855) #17	SPI1 (ENSUPAG00010013850) #18	ENSUPAG00010013841	MYBPC3 (ENSUPAG00010013812) #19	MADD (ENSUPAG00010011229) #20	NR1H3 (ENSUPAG00010011188) #21	ACP2 (ENSUPAG00010011162) #22	DDB2 (ENSUPAG00010011149) #23	PACSIN3 (ENSUPAG00010011141) #24	ARFGAP2 (ENSUPAG00010011117) #25	CSTPP1 (ENSUPAG00010011093) #26	LRP4 (ENSUPAG00010011049) #27	CKAP5 (ENSUPAG00010010730) #28	F2 (ENSUPAG00010010714) #29	ZNF408 (ENSUPAG00010010704) #30	ARHGAP1 (ENSUPAG00010010696) #31	ATG13 (ENSUPAG00010010621) #32	HARBI1 (ENSUPAG00010010611)	AMBRA1 (ENSUPAG00010010430) #35	CHRM4 (ENSUPAG00010010417) #36	MDK (ENSUPAG00010010379) #37	DGKZ (ENSUPAG00010010211)
Squirrel	MODERN SPECIES	162	AGBL2 (ENSSTOG00000003491) #9	ENSSTOG00000028441 #10	C1QTNF4 (ENSSTOG00000024273) #11	FAM180B (ENSSTOG00000000628)	NDUFS3 (ENSSTOG00000000622) #12	KBTBD4 (ENSSTOG00000020864) #13	PTPMT1 (ENSSTOG00000019770)	CELF1 (ENSSTOG00000000613) #14	RAPSN (ENSSTOG00000011047) #15	PSMC3 (ENSSTOG00000011038) #16	SLC39A13 (ENSSTOG00000027722) #17	SPI1 (ENSSTOG00000022735) #18	MYBPC3 (ENSSTOG00000026473) #19	MADD (ENSSTOG00000007626) #20	NR1H3 (ENSSTOG00000007611) #21	ACP2 (ENSSTOG00000007586) #22	DDB2 (ENSSTOG00000007571) #23	PACSIN3 (ENSSTOG00000007547) #24	ARFGAP2 (ENSSTOG00000007524) #25	CSTPP1 (ENSSTOG00000007512) #26	LRP4 (ENSSTOG00000005236) #27	CKAP5 (ENSSTOG00000005158) #28	F2 (ENSSTOG00000005130) #29	ZNF408 (ENSSTOG00000005114) #30	ARHGAP1 (ENSSTOG00000026557) #31	ATG13 (ENSSTOG00000005077) #32	HARBI1 (ENSSTOG00000005072)	AMBRA1 (ENSSTOG00000019411) #35	CHRM4 (ENSSTOG00000022455) #36	MDK (ENSSTOG00000027636) #37	DGKZ (ENSSTOG00000012704)
Alpin marmot	MODERN SPECIES	3	ENSMMMG00000015743	ENSMMMG00000015697 #9	ENSMMMG00000015683 #10	FAM180B (ENSMMMG00000015675)	NDUFS3 (ENSMMMG00000015667) #12	KBTBD4 (ENSMMMG00000015654) #13	ENSMMMG00000015652	CELF1 (ENSMMMG00000015346) #14	RAPSN (ENSMMMG00000015294) #15	PSMC3 (ENSMMMG00000015270) #16	SLC39A13 (ENSMMMG00000015224) #17	SPI1 (ENSMMMG00000015212) #18	MYBPC3 (ENSMMMG00000015189) #19	MADD (ENSMMMG00000014606) #20	NR1H3 (ENSMMMG00000014541) #21	ACP2 (ENSMMMG00000014527) #22	DDB2 (ENSMMMG00000014518) #23	PACSIN3 (ENSMMMG00000014498) #24	ARFGAP2 (ENSMMMG00000014424) #25	CSTPP1 (ENSMMMG00000014382) #26	LRP4 (ENSMMMG00000014335) #27	CKAP5 (ENSMMMG00000013993) #28	F2 (ENSMMMG00000013961) #29	ZNF408 (ENSMMMG00000013944) #30	ARHGAP1 (ENSMMMG00000013934) #31	ATG13 (ENSMMMG00000013875) #32	HARBI1 (ENSMMMG00000013860)	AMBRA1 (ENSMMMG00000013284) #35	CHRM4 (ENSMMMG00000013278) #36	MDK (ENSMMMG00000013259) #37	DGKZ (ENSMMMG00000013155)
Eurasian red squirrel	MODERN SPECIES	2	FAM180B (ENSSVLG00005009289)	NDUFS3 (ENSSVLG00005009316) #12	KBTBD4 (ENSSVLG00005009359) #13	PTPMT1 (ENSSVLG00005009417)	CELF1 (ENSSVLG00005009492) #14	RAPSN (ENSSVLG00005009920) #15	ENSSVLG00005009993 #16	ENSSVLG00005010167 #17	ENSSVLG00005010225 #16	ENSSVLG00005010302 #17	SPI1 (ENSSVLG00005010597) #18	MYBPC3 (ENSSVLG00005010729) #19	MADD (ENSSVLG00005011762) #20	ENSSVLG00005012055	NR1H3 (ENSSVLG00005012159) #21	ACP2 (ENSSVLG00005012397) #22	DDB2 (ENSSVLG00005012634) #23	PACSIN3 (ENSSVLG00005013010) #24	ARFGAP2 (ENSSVLG00005013354) #25	CSTPP1 (ENSSVLG00005013495) #26	LRP4 (ENSSVLG00005013702) #27	CKAP5 (ENSSVLG00005013939) #28	F2 (ENSSVLG00005014116) #29	ARHGAP1 (ENSSVLG00005014685) #31	ENSSVLG00005014869 #32	HARBI1 (ENSSVLG00005015510)	AMBRA1 (ENSSVLG00005015569) #35	CHRM4 (ENSSVLG00005015740) #36	MDK (ENSSVLG00005015782) #37	DGKZ (ENSSVLG00005015887)	ENSSVLG00005015926
Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00390000003450 #8	ENSGT00940000160201 #9	ENSGT00390000000020.b #10	ENSGT00940000161832.a #11	ENSGT00390000017480 #12	ENSGT00940000158775 #13	ENSGT00390000014065	ENSGT00940000158970 #14	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00940000160630 #31	ENSGT00390000007055 #32	ENSGT00940000154348.c.b.a	ENSGT00390000016223 #35	ENSGT00940000160394.a #36	ENSGT00390000007640.b #37	ENSGT00940000156152	ENSGT00860000136066
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00390000003450 #8	ENSGT00940000160201 #9	ENSGT00390000000020.b #10	ENSGT00940000161832.a #11	ENSGT00390000017480 #12	ENSGT00940000158775 #13	ENSGT00390000014065	ENSGT00940000158970 #14	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00940000160630 #31	ENSGT00390000007055 #32	ENSGT00940000154348.c.b.a	ENSGT00390000016223 #35	ENSGT00940000160394.a #36	ENSGT00390000007640.b #37	ENSGT00940000156152	ENSGT00860000136066
Guinea pig	MODERN SPECIES	72	FNBP4 (ENSCPOG00000000320) #8	AGBL2 (ENSCPOG00000003935) #9	MTCH2 (ENSCPOG00000006293) #10	C1QTNF4 (ENSCPOG00000023948) #11	NDUFS3 (ENSCPOG00000006141) #12	KBTBD4 (ENSCPOG00000019448) #13	PTPMT1 (ENSCPOG00000031147)	CELF1 (ENSCPOG00000036381) #14	RAPSN (ENSCPOG00000015456) #15	PSMC3 (ENSCPOG00000008176) #16	SLC39A13 (ENSCPOG00000008169) #17	SPI1 (ENSCPOG00000022138) #18	MYBPC3 (ENSCPOG00000013368) #19	MADD (ENSCPOG00000013364) #20	NR1H3 (ENSCPOG00000013362) #21	ACP2 (ENSCPOG00000013359) #22	DDB2 (ENSCPOG00000013358) #23	PACSIN3 (ENSCPOG00000013356) #24	ARFGAP2 (ENSCPOG00000013352) #25	CSTPP1 (ENSCPOG00000020334) #26	LRP4 (ENSCPOG00000007072) #27	CKAP5 (ENSCPOG00000007054) #28	F2 (ENSCPOG00000026682) #29	ARHGAP1 (ENSCPOG00000013046) #31	ATG13 (ENSCPOG00000013042) #32	HARBI1 (ENSCPOG00000037304)	AMBRA1 (ENSCPOG00000007341) #35	CHRM4 (ENSCPOG00000020788) #36	MDK (ENSCPOG00000007340) #37	DGKZ (ENSCPOG00000009636)	CREB3L1 (ENSCPOG00000010073)
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00390000000972 #7	ENSGT00390000003450 #8	ENSGT00940000160201 #9	ENSGT00390000000020.b #10	ENSGT00940000161832.a #11	ENSGT00390000017480 #12	ENSGT00940000158775 #13	ENSGT00940000158970 #14	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000154234.b #29	ENSGT00940000160630 #31	ENSGT00390000007055 #32	ENSGT00940000154348.c.b.a	ENSGT00390000016223 #35	ENSGT00940000160394.a #36	ENSGT00390000007640.b #37	ENSGT00940000156152	ENSGT00860000136066
Long-tailed chinchilla	MODERN SPECIES	129	PTPRJ (ENSCLAG00000015568)	NUP160 (ENSCLAG00000015457) #7	FNBP4 (ENSCLAG00000014534) #8	MTCH2 (ENSCLAG00000012026) #10	C1QTNF4 (ENSCLAG00000015186) #11	NDUFS3 (ENSCLAG00000014873) #12	KBTBD4 (ENSCLAG00000016255) #13	CELF1 (ENSCLAG00000011791) #14	RAPSN (ENSCLAG00000015497) #15	PSMC3 (ENSCLAG00000013916) #16	SLC39A13 (ENSCLAG00000014480) #17	SPI1 (ENSCLAG00000017201) #18	MYBPC3 (ENSCLAG00000015418) #19	MADD (ENSCLAG00000012503) #20	NR1H3 (ENSCLAG00000013563) #21	ACP2 (ENSCLAG00000014608) #22	DDB2 (ENSCLAG00000016473) #23	ENSCLAG00000012709 #24	ARFGAP2 (ENSCLAG00000016467) #25	CSTPP1 (ENSCLAG00000014110) #26	LRP4 (ENSCLAG00000016159) #27	CKAP5 (ENSCLAG00000015801) #28	F2 (ENSCLAG00000015618) #29	ARHGAP1 (ENSCLAG00000013542) #31	ATG13 (ENSCLAG00000015328) #32	HARBI1 (ENSCLAG00000013578)	AMBRA1 (ENSCLAG00000015156) #35	CHRM4 (ENSCLAG00000013251) #36	MDK (ENSCLAG00000014462) #37	DGKZ (ENSCLAG00000016057)	ENSCLAG00000014194
Degu	MODERN SPECIES	59	PTPRJ (ENSODEG00000016025)	NUP160 (ENSODEG00000015381) #7	FNBP4 (ENSODEG00000016574) #8	AGBL2 (ENSODEG00000016111) #9	MTCH2 (ENSODEG00000015416) #10	NDUFS3 (ENSODEG00000015948) #12	KBTBD4 (ENSODEG00000015830) #13	CELF1 (ENSODEG00000015204) #14	RAPSN (ENSODEG00000015194) #15	ENSODEG00000016550 #16	SLC39A13 (ENSODEG00000015895) #17	SPI1 (ENSODEG00000015369) #18	MYBPC3 (ENSODEG00000016030) #19	MADD (ENSODEG00000017645) #20	NR1H3 (ENSODEG00000016180) #21	ACP2 (ENSODEG00000015528) #22	ENSODEG00000015965 #24	ENSODEG00000016456 #25	CSTPP1 (ENSODEG00000016656) #26	LRP4 (ENSODEG00000015720) #27	CKAP5 (ENSODEG00000016409) #28	F2 (ENSODEG00000016157) #29	ARHGAP1 (ENSODEG00000016156) #31	ATG13 (ENSODEG00000017294) #32	ENSODEG00000016339	AMBRA1 (ENSODEG00000016633) #35	CHRM4 (ENSODEG00000020352) #36	MDK (ENSODEG00000015931) #37	DGKZ (ENSODEG00000016309)	ENSODEG00000016420	ENSODEG00000016039
Naked mole-rat female	MODERN SPECIES	14	ENSHGLG00000039374	ENSHGLG00000008506	ENSHGLG00000043784	MTCH2 (ENSHGLG00000017536) #10	FAM180B (ENSHGLG00000038229)	NDUFS3 (ENSHGLG00000018368) #12	KBTBD4 (ENSHGLG00000047234) #13	ENSHGLG00000037048	ENSHGLG00000006909 #14	RAPSN (ENSHGLG00000008521) #15	PSMC3 (ENSHGLG00000005713) #16	SLC39A13 (ENSHGLG00000041087) #17	ENSHGLG00000011456 #18	ENSHGLG00000044290 #19	NR1H3 (ENSHGLG00000014541) #21	ENSHGLG00000036516 #22	DDB2 (ENSHGLG00000018689) #23	ENSHGLG00000040462 #25	CSTPP1 (ENSHGLG00000018725) #26	ARHGAP1 (ENSHGLG00000017685) #31	ENSHGLG00000013428 #32	ENSHGLG00000018447	AMBRA1 (ENSHGLG00000017564) #35	ENSHGLG00000034290	ENSHGLG00000042531	ENSHGLG00000032476	CREB3L1 (ENSHGLG00000048284)	ENSHGLG00000033741	ENSHGLG00000037709	ENSHGLG00000050302	ENSHGLG00000032419
Lagomorpha	ANCESTRAL SPECIES	4	ENSGT00390000003450 #8	ENSGT00940000160201 #9	ENSGT00390000000020.b #10	ENSGT00940000161832.a #11	ENSGT00940000154479.a	ENSGT00390000017480 #12	ENSGT00940000158775 #13	ENSGT00390000014065	ENSGT00940000158970 #14	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00940000158287 #27	ENSGT00390000014757 #28	ENSGT00940000164059	ENSGT00930000151062 #30	ENSGT00940000160630 #31	ENSGT00390000007055 #32	ENSGT00940000154348.c.b.a	ENSGT00390000016223 #35	ENSGT00940000160394.a #36	ENSGT00940000156152	ENSGT00940000159848
Rabbit	MODERN SPECIES		FNBP4 (ENSOCUG00000017534) #8	AGBL2 (ENSOCUG00000017524) #9	MTCH2 (ENSOCUG00000006368) #10	C1QTNF4 (ENSOCUG00000006365) #11	FAM180B (ENSOCUG00000006361)	NDUFS3 (ENSOCUG00000006359) #12	KBTBD4 (ENSOCUG00000006353) #13	PTPMT1 (ENSOCUG00000021229)	CELF1 (ENSOCUG00000001311) #14	RAPSN (ENSOCUG00000008892) #15	PSMC3 (ENSOCUG00000026980) #16	SLC39A13 (ENSOCUG00000005557) #17	MYBPC3 (ENSOCUG00000002112) #19	MADD (ENSOCUG00000002099) #20	NR1H3 (ENSOCUG00000002095) #21	ACP2 (ENSOCUG00000013342) #22	DDB2 (ENSOCUG00000002076) #23	PACSIN3 (ENSOCUG00000027715) #24	ENSOCUG00000002073 #25	CSTPP1 (ENSOCUG00000002066) #26	LRP4 (ENSOCUG00000002052) #27	CKAP5 (ENSOCUG00000016200) #28	ZNF408 (ENSOCUG00000010953) #30	ARHGAP1 (ENSOCUG00000016160) #31	ATG13 (ENSOCUG00000016144) #32	HARBI1 (ENSOCUG00000016137)	AMBRA1 (ENSOCUG00000016117) #35	CHRM4 (ENSOCUG00000021064) #36	ENSOCUG00000024752	CREB3L1 (ENSOCUG00000004418)	PHF21A (ENSOCUG00000001675)
Pika	MODERN SPECIES	3586													MYBPC3 (ENSOPRG00000009569) #19	MADD (ENSOPRG00000009509) #20	NR1H3 (ENSOPRG00000009497) #21	ACP2 (ENSOPRG00000009485) #22	DDB2 (ENSOPRG00000009468) #23	PACSIN3 (ENSOPRG00000009451) #24	ARFGAP2 (ENSOPRG00000009432) #25	CSTPP1 (ENSOPRG00000009417) #26	LRP4 (ENSOPRG00000009347) #27	CKAP5 (ENSOPRG00000009287) #28	ENSOPRG00000009249	ZNF408 (ENSOPRG00000009225) #30	ARHGAP1 (ENSOPRG00000009201) #31	ATG13 (ENSOPRG00000009172) #32
Tree shrew	MODERN SPECIES	1561												ENSTBEG00000001919 #18	MYBPC3 (ENSTBEG00000000966) #19	MADD (ENSTBEG00000000554) #20	NR1H3 (ENSTBEG00000000492) #21	ACP2 (ENSTBEG00000000444) #22	DDB2 (ENSTBEG00000000275) #23