Mus	ANCESTRAL SPECIES	1	ENSGT00390000003450	ENSGT00940000160201 #7	ENSGT00390000000020.b #8	ENSGT00940000161832.a #9	ENSGT00390000017480 #10	ENSGT00940000158775 #11	ENSGT00390000014065 #12	ENSGT00940000158970 #13	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374 #27	ENSGT00940000158287 #28	ENSGT00390000014757 #30	ENSGT00940000154234.b #31	ENSGT00930000151062 #32	ENSGT00940000160630 #33	ENSGT00390000007055 #34	ENSGT00940000154348.c.b.a #35	ENSGT00390000016223 #36	ENSGT00940000160394.a #37	ENSGT00390000007640.b
Mus_A	ANCESTRAL SPECIES		ENSGT00390000003450	ENSGT00940000160201 #7	ENSGT00390000000020.b #8	ENSGT00940000161832.a #9	ENSGT00390000017480 #10	ENSGT00940000158775 #11	ENSGT00390000014065 #12	ENSGT00940000158970 #13	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374 #27	ENSGT00940000158287 #28	ENSGT00390000014757 #30	ENSGT00940000154234.b #31	ENSGT00930000151062 #32	ENSGT00940000160630 #33	ENSGT00390000007055 #34	ENSGT00940000154348.c.b.a #35	ENSGT00390000016223 #36	ENSGT00940000160394.a #37	ENSGT00390000007640.b.g
Mus_B	ANCESTRAL SPECIES	1	ENSGT00390000003450	ENSGT00940000160201 #7	ENSGT00390000000020.b #8	ENSGT00940000161832.a #9	ENSGT00390000017480 #10	ENSGT00940000158775 #11	ENSGT00390000014065 #12	ENSGT00940000158970 #13	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374 #27	ENSGT00940000158287 #28	ENSGT00390000014757 #30	ENSGT00940000154234.b #31	ENSGT00930000151062 #32	ENSGT00940000160630 #33	ENSGT00390000007055 #34	ENSGT00940000154348.c.b.a #35	ENSGT00390000016223 #36	ENSGT00940000160394.a #37	ENSGT00390000007640.b.g
Mus_C	ANCESTRAL SPECIES		ENSGT00390000003450	ENSGT00940000160201 #7	ENSGT00390000000020.b #8	ENSGT00940000161832.a #9	ENSGT00390000017480 #10	ENSGT00940000158775 #11	ENSGT00390000014065 #12	ENSGT00940000158970 #13	ENSGT00390000016785 #15	ENSGT01020000230346.E #16	ENSGT00940000157349 #17	ENSGT00940000159754 #18	ENSGT00940000157698.b #19	ENSGT00940000156718 #20	ENSGT00940000159068 #21	ENSGT00940000158446 #22	ENSGT00510000047881 #23	ENSGT00950000182973.b.a #24	ENSGT00940000155568 #25	ENSGT00390000012935 #26	ENSGT00960000189374 #27	ENSGT00940000158287 #28	ENSGT00390000014757 #30	ENSGT00940000154234.b #31	ENSGT00930000151062 #32	ENSGT00940000160630 #33	ENSGT00390000007055 #34	ENSGT00940000154348.c.b.a #35	ENSGT00390000016223 #36	ENSGT00940000160394.a #37	ENSGT00390000007640.b.g
Steppe mouse	MODERN SPECIES	36	Agbl2 (ENSMSIG00000027703) #7	ENSMSIG00000027642 #8	C1qtnf4 (ENSMSIG00000027637) #9	Ndufs3 (ENSMSIG00000027630) #10	Kbtbd4 (ENSMSIG00000027623) #11	ENSMSIG00000027615 #12	Celf1 (ENSMSIG00000027572) #13	ENSMSIG00000027554 #14	Rapsn (ENSMSIG00000027530) #15	Psmc3 (ENSMSIG00000027459) #16	Slc39a13 (ENSMSIG00000027429) #17	Spi1 (ENSMSIG00000027421) #18	Mybpc3 (ENSMSIG00000027308) #19	Madd (ENSMSIG00000021063) #20	Nr1h3 (ENSMSIG00000020950) #21	Acp2 (ENSMSIG00000020936) #22	Ddb2 (ENSMSIG00000020921) #23	Pacsin3 (ENSMSIG00000020892) #24	Arfgap2 (ENSMSIG00000020760) #25	ENSMSIG00000020727 #26	ENSMSIG00000020721 #27	Lrp4 (ENSMSIG00000020667) #28	ENSMSIG00000020658 #29	Ckap5 (ENSMSIG00000020211) #30	F2 (ENSMSIG00000020083) #31	Zfp408 (ENSMSIG00000020068) #32	Arhgap1 (ENSMSIG00000020000) #33	Atg13 (ENSMSIG00000019915) #34	Harbi1 (ENSMSIG00000019911) #35	Ambra1 (ENSMSIG00000019820) #36	Chrm4 (ENSMSIG00000019816) #37
spretus	MODERN SPECIES	11	Nup160 (MGP_SPRETEiJ_G0024852)	Fnbp4 (MGP_SPRETEiJ_G0024853)	Agbl2 (MGP_SPRETEiJ_G0024854) #7	Mtch2 (MGP_SPRETEiJ_G0024855) #8	C1qtnf4 (MGP_SPRETEiJ_G0024856) #9	Ndufs3 (MGP_SPRETEiJ_G0024857) #10	Kbtbd4 (MGP_SPRETEiJ_G0024858) #11	Celf1 (MGP_SPRETEiJ_G0024859) #13	Rapsn (MGP_SPRETEiJ_G0024860) #15	Psmc3 (MGP_SPRETEiJ_G0024861) #16	Slc39a13 (MGP_SPRETEiJ_G0024862) #17	Spi1 (MGP_SPRETEiJ_G0024863) #18	Mybpc3 (MGP_SPRETEiJ_G0024864) #19	Madd (MGP_SPRETEiJ_G0024865) #20	Nr1h3 (MGP_SPRETEiJ_G0024866) #21	Acp2 (MGP_SPRETEiJ_G0024867) #22	Ddb2 (MGP_SPRETEiJ_G0024868) #23	Pacsin3 (MGP_SPRETEiJ_G0024869) #24	Arfgap2 (MGP_SPRETEiJ_G0024870) #25	Cstpp1 (MGP_SPRETEiJ_G0024871) #26	Lrp4 (MGP_SPRETEiJ_G0024872) #28	Ckap5 (MGP_SPRETEiJ_G0024873) #30	F2 (MGP_SPRETEiJ_G0024874) #31	Zfp408 (MGP_SPRETEiJ_G0024875) #32	Arhgap1 (MGP_SPRETEiJ_G0024876) #33	Atg13 (MGP_SPRETEiJ_G0024877) #34	Harbi1 (MGP_SPRETEiJ_G0024878) #35	Ambra1 (MGP_SPRETEiJ_G0024879) #36	Chrm4 (MGP_SPRETEiJ_G0024880) #37	Mdk (MGP_SPRETEiJ_G0024881)	Dgkz (MGP_SPRETEiJ_G0024882)
Mouse	MODERN SPECIES	11	Fnbp4 (ENSMUSG00000008200)	Agbl2 (ENSMUSG00000040812) #7	Mtch2 (ENSMUSG00000027282) #8	C1qtnf4 (ENSMUSG00000040794) #9	Ndufs3 (ENSMUSG00000005510) #10	Kbtbd4 (ENSMUSG00000005505) #11	Ptpmt1 (ENSMUSG00000063235) #12	Celf1 (ENSMUSG00000005506) #13	Rapsn (ENSMUSG00000002104) #15	Psmc3 (ENSMUSG00000002102) #16	Slc39a13 (ENSMUSG00000002105) #17	Spi1 (ENSMUSG00000002111) #18	Mybpc3 (ENSMUSG00000002100) #19	Madd (ENSMUSG00000040687) #20	Nr1h3 (ENSMUSG00000002108) #21	Acp2 (ENSMUSG00000002103) #22	Ddb2 (ENSMUSG00000002109) #23	Pacsin3 (ENSMUSG00000027257) #24	Arfgap2 (ENSMUSG00000027255) #25	Cstpp1 (ENSMUSG00000040591) #26	Lrp4 (ENSMUSG00000027253) #28	Ckap5 (ENSMUSG00000040549) #30	F2 (ENSMUSG00000027249) #31	Zfp408 (ENSMUSG00000075040) #32	Arhgap1 (ENSMUSG00000027247) #33	Atg13 (ENSMUSG00000027244) #34	Harbi1 (ENSMUSG00000027243) #35	Ambra1 (ENSMUSG00000040506) #36	Chrm4 (ENSMUSG00000040495) #37	Mdk (ENSMUSG00000027239)	Dgkz (ENSMUSG00000040479)
Ryukyu mouse	MODERN SPECIES	11	Nup160 (MGP_CAROLIEiJ_G0023941)	Fnbp4 (MGP_CAROLIEiJ_G0023942)	Agbl2 (MGP_CAROLIEiJ_G0023943) #7	Mtch2 (MGP_CAROLIEiJ_G0023944) #8	Madd (MGP_CAROLIEiJ_G0023945) #20	C1qtnf4 (MGP_CAROLIEiJ_G0023946) #9	Ndufs3 (MGP_CAROLIEiJ_G0023947) #10	Kbtbd4 (MGP_CAROLIEiJ_G0023948) #11	Celf1 (MGP_CAROLIEiJ_G0023949) #13	Rapsn (MGP_CAROLIEiJ_G0023950) #15	Psmc3 (MGP_CAROLIEiJ_G0023951) #16	Slc39a13 (MGP_CAROLIEiJ_G0023952) #17	Spi1 (MGP_CAROLIEiJ_G0023953) #18	Mybpc3 (MGP_CAROLIEiJ_G0023954) #19	Nr1h3 (MGP_CAROLIEiJ_G0023955) #21	Acp2 (MGP_CAROLIEiJ_G0023956) #22	Ddb2 (MGP_CAROLIEiJ_G0023957) #23	Pacsin3 (MGP_CAROLIEiJ_G0023958) #24	Arfgap2 (MGP_CAROLIEiJ_G0023959) #25	Cstpp1 (MGP_CAROLIEiJ_G0023960) #26	MGP_CAROLIEiJ_G0023961	Lrp4 (MGP_CAROLIEiJ_G0023962) #28	Ckap5 (MGP_CAROLIEiJ_G0023963) #30	F2 (MGP_CAROLIEiJ_G0023964) #31	Zfp408 (MGP_CAROLIEiJ_G0023965) #32	Arhgap1 (MGP_CAROLIEiJ_G0023966) #33	Atg13 (MGP_CAROLIEiJ_G0023967) #34	Harbi1 (MGP_CAROLIEiJ_G0023968) #35	Ambra1 (MGP_CAROLIEiJ_G0023969) #36	Chrm4 (MGP_CAROLIEiJ_G0023970) #37	Mdk (MGP_CAROLIEiJ_G0023971)
Shrew mouse	MODERN SPECIES	16	Nup160 (MGP_PahariEiJ_G0025378)	Fnbp4 (MGP_PahariEiJ_G0025379)	Agbl2 (MGP_PahariEiJ_G0025380) #7	Mtch2 (MGP_PahariEiJ_G0025381) #8	C1qtnf4 (MGP_PahariEiJ_G0025382) #9	Ndufs3 (MGP_PahariEiJ_G0025383) #10	Kbtbd4 (MGP_PahariEiJ_G0025384) #11	Celf1 (MGP_PahariEiJ_G0025385) #13	Rapsn (MGP_PahariEiJ_G0025386) #15	Psmc3 (MGP_PahariEiJ_G0025387) #16	Slc39a13 (MGP_PahariEiJ_G0025388) #17	Spi1 (MGP_PahariEiJ_G0025389) #18	Mybpc3 (MGP_PahariEiJ_G0025390) #19	Madd (MGP_PahariEiJ_G0025391) #20	Nr1h3 (MGP_PahariEiJ_G0025392) #21	Acp2 (MGP_PahariEiJ_G0025393) #22	Ddb2 (MGP_PahariEiJ_G0025394) #23	Pacsin3 (MGP_PahariEiJ_G0025395) #24	Arfgap2 (MGP_PahariEiJ_G0025396) #25	Cstpp1 (MGP_PahariEiJ_G0025397) #26	MGP_PahariEiJ_G0025398	Lrp4 (MGP_PahariEiJ_G0025399) #28	Ckap5 (MGP_PahariEiJ_G0025400) #30	F2 (MGP_PahariEiJ_G0025401) #31	Zfp408 (MGP_PahariEiJ_G0025402) #32	Arhgap1 (MGP_PahariEiJ_G0025403) #33	Atg13 (MGP_PahariEiJ_G0025404) #34	Harbi1 (MGP_PahariEiJ_G0025405) #35	Ambra1 (MGP_PahariEiJ_G0025406) #36	Chrm4 (MGP_PahariEiJ_G0025407) #37	Mdk (MGP_PahariEiJ_G0025408)