Euarchontoglires_A ANCESTRAL SPECIES 1 ENSGT00940000160201 #8 ENSGT00390000000020.b #9 ENSGT00940000161832.a #10 ENSGT00940000154479.a #11 ENSGT00390000017480 #12 ENSGT00940000158775 #13 ENSGT00390000014065 #14 ENSGT00940000158970 #15 ENSGT00390000016785 #16 ENSGT01020000230346.E #17 ENSGT00940000157349 #18 ENSGT00940000159754 ENSGT00940000157698.b #19 ENSGT00940000156718 #20 ENSGT00940000159068 #21 ENSGT00940000158446 #22 ENSGT00510000047881 #23 ENSGT00950000182973.b.a #24 ENSGT00940000155568 #25 ENSGT00390000012935 #26 ENSGT00960000189374 ENSGT00940000158287 #27 ENSGT00390000014757 #28 ENSGT00940000154234.b ENSGT00930000151062 #29 ENSGT00940000160630 #30 ENSGT00390000007055 #31 ENSGT00940000154348.c.b.a #32 ENSGT00390000016223 #33 ENSGT00940000160394.a #34 ENSGT00390000007640.b Glires ANCESTRAL SPECIES 1 ENSGT00940000160201 #8 ENSGT00390000000020.b #9 ENSGT00940000161832.a #10 ENSGT00940000154479.a #11 ENSGT00390000017480 #12 ENSGT00940000158775 #13 ENSGT00390000014065 #14 ENSGT00940000158970 #15 ENSGT00390000016785 #16 ENSGT01020000230346.E #17 ENSGT00940000157349 #18 ENSGT00940000159754 ENSGT00940000157698.b #19 ENSGT00940000156718 #20 ENSGT00940000159068 #21 ENSGT00940000158446 #22 ENSGT00510000047881 #23 ENSGT00950000182973.b.a #24 ENSGT00940000155568 #25 ENSGT00390000012935 #26 ENSGT00960000189374 ENSGT00940000158287 #27 ENSGT00390000014757 #28 ENSGT00940000154234.b ENSGT00930000151062 #29 ENSGT00940000160630 #30 ENSGT00390000007055 #31 ENSGT00940000154348.c.b.a #32 ENSGT00390000016223 #33 ENSGT00940000160394.a #34 ENSGT00390000007640.b Lagomorpha ANCESTRAL SPECIES 4 ENSGT00390000003450 #7 ENSGT00940000160201 #8 ENSGT00390000000020.b #9 ENSGT00940000161832.a #10 ENSGT00940000154479.a #11 ENSGT00390000017480 #12 ENSGT00940000158775 #13 ENSGT00390000014065 #14 ENSGT00940000158970 #15 ENSGT00390000016785 #16 ENSGT01020000230346.E #17 ENSGT00940000157349 #18 ENSGT00940000157698.b #19 ENSGT00940000156718 #20 ENSGT00940000159068 #21 ENSGT00940000158446 #22 ENSGT00510000047881 #23 ENSGT00950000182973.b.a #24 ENSGT00940000155568 #25 ENSGT00390000012935 #26 ENSGT00940000158287 #27 ENSGT00390000014757 #28 ENSGT00940000164059 ENSGT00930000151062 #29 ENSGT00940000160630 #30 ENSGT00390000007055 #31 ENSGT00940000154348.c.b.a #32 ENSGT00390000016223 #33 ENSGT00940000160394.a #34 ENSGT00940000156152 #35 ENSGT00940000159848 #36 Rabbit MODERN SPECIES FNBP4 (ENSOCUG00000017534) #7 AGBL2 (ENSOCUG00000017524) #8 MTCH2 (ENSOCUG00000006368) #9 C1QTNF4 (ENSOCUG00000006365) #10 FAM180B (ENSOCUG00000006361) #11 NDUFS3 (ENSOCUG00000006359) #12 KBTBD4 (ENSOCUG00000006353) #13 PTPMT1 (ENSOCUG00000021229) #14 CELF1 (ENSOCUG00000001311) #15 RAPSN (ENSOCUG00000008892) #16 PSMC3 (ENSOCUG00000026980) #17 SLC39A13 (ENSOCUG00000005557) #18 MYBPC3 (ENSOCUG00000002112) #19 MADD (ENSOCUG00000002099) #20 NR1H3 (ENSOCUG00000002095) #21 ACP2 (ENSOCUG00000013342) #22 DDB2 (ENSOCUG00000002076) #23 PACSIN3 (ENSOCUG00000027715) #24 ENSOCUG00000002073 #25 CSTPP1 (ENSOCUG00000002066) #26 LRP4 (ENSOCUG00000002052) #27 CKAP5 (ENSOCUG00000016200) #28 ZNF408 (ENSOCUG00000010953) #29 ARHGAP1 (ENSOCUG00000016160) #30 ATG13 (ENSOCUG00000016144) #31 HARBI1 (ENSOCUG00000016137) #32 AMBRA1 (ENSOCUG00000016117) #33 CHRM4 (ENSOCUG00000021064) #34 ENSOCUG00000024752 #35 CREB3L1 (ENSOCUG00000004418) #36 PHF21A (ENSOCUG00000001675) #37 Pika MODERN SPECIES 3586 MYBPC3 (ENSOPRG00000009569) #19 MADD (ENSOPRG00000009509) #20 NR1H3 (ENSOPRG00000009497) #21 ACP2 (ENSOPRG00000009485) #22 DDB2 (ENSOPRG00000009468) #23 PACSIN3 (ENSOPRG00000009451) #24 ARFGAP2 (ENSOPRG00000009432) #25 CSTPP1 (ENSOPRG00000009417) #26 LRP4 (ENSOPRG00000009347) #27 CKAP5 (ENSOPRG00000009287) #28 ENSOPRG00000009249 ZNF408 (ENSOPRG00000009225) #29 ARHGAP1 (ENSOPRG00000009201) #30 ATG13 (ENSOPRG00000009172) #31 Rodentia ANCESTRAL SPECIES 1 ENSGT00940000160201 #8 ENSGT00390000000020.b #9 ENSGT00940000161832.a #10 ENSGT00940000154479.a #11 ENSGT00390000017480 #12 ENSGT00940000158775 #13 ENSGT00390000014065 #14 ENSGT00940000158970 #15 ENSGT00390000016785 #16 ENSGT01020000230346.E #17 ENSGT00940000157349 #18 ENSGT00940000159754 ENSGT00940000157698.b #19 ENSGT00940000156718 #20 ENSGT00940000159068 #21 ENSGT00940000158446 #22 ENSGT00510000047881 #23 ENSGT00950000182973.b.a #24 ENSGT00940000155568 #25 ENSGT00390000012935 #26 ENSGT00960000189374 ENSGT00940000158287 #27 ENSGT00390000014757 #28 ENSGT00940000154234.b ENSGT00930000151062 #29 ENSGT00940000160630 #30 ENSGT00390000007055 #31 ENSGT00940000154348.c.b.a #32 ENSGT00390000016223 #33 ENSGT00940000160394.a #34 ENSGT00390000007640.b Rodentia_B ANCESTRAL SPECIES 5 ENSGT00390000003450 #7 ENSGT00940000160201 #8 ENSGT00390000000020.b #9 ENSGT00940000161832.a #10 ENSGT00390000017480 #12 ENSGT00940000158775 #13 ENSGT00390000014065 #14 ENSGT00940000158970 #15 ENSGT00390000016785 #16 ENSGT01020000230346.E #17 ENSGT00940000157349 #18 ENSGT00940000159754 ENSGT00940000157698.b #19 ENSGT00940000156718 #20 ENSGT00940000159068 #21 ENSGT00940000158446 #22 ENSGT00510000047881 #23 ENSGT00950000182973.b.a #24 ENSGT00940000155568 #25 ENSGT00390000012935 #26 ENSGT00960000189374 ENSGT00940000158287 #27 ENSGT00390000014757 #28 ENSGT00940000154234.b ENSGT00930000151062 #29 ENSGT00940000160630 #30 ENSGT00390000007055 #31 ENSGT00940000154348.c.b.a #32 ENSGT00390000016223 #33 ENSGT00940000160394.a #34 ENSGT00390000007640.b Myomorpha ANCESTRAL SPECIES 4 ENSGT00390000003450 #7 ENSGT00940000160201 #8 ENSGT00390000000020.b #9 ENSGT00940000161832.a #10 ENSGT00390000017480 #12 ENSGT00940000158775 #13 ENSGT00390000014065 #14 ENSGT00940000158970 #15 ENSGT00390000016785 #16 ENSGT01020000230346.E #17 ENSGT00940000157349 #18 ENSGT00940000159754 ENSGT00940000157698.b #19 ENSGT00940000156718 #20 ENSGT00940000159068 #21 ENSGT00940000158446 #22 ENSGT00510000047881 #23 ENSGT00950000182973.b.a #24 ENSGT00940000155568 #25 ENSGT00390000012935 #26 ENSGT00960000189374 ENSGT00940000158287 #27 ENSGT00390000014757 #28 ENSGT00940000154234.b ENSGT00930000151062 #29 ENSGT00940000160630 #30 ENSGT00390000007055 #31 ENSGT00940000154348.c.b.a #32 ENSGT00390000016223 #33 ENSGT00940000160394.a #34 ENSGT00390000007640.b Muroidea ANCESTRAL SPECIES 2 ENSGT00390000003450 #7 ENSGT00940000160201 #8 ENSGT00390000000020.b #9 ENSGT00940000161832.a #10 ENSGT00390000017480 #12 ENSGT00940000158775 #13 ENSGT00390000014065 #14 ENSGT00940000158970 #15 ENSGT00390000016785 #16 ENSGT01020000230346.E #17 ENSGT00940000157349 #18 ENSGT00940000159754 ENSGT00940000157698.b #19 ENSGT00940000156718 #20 ENSGT00940000159068 #21 ENSGT00940000158446 #22 ENSGT00510000047881 #23 ENSGT00950000182973.b.a #24 ENSGT00940000155568 #25 ENSGT00390000012935 #26 ENSGT00960000189374 ENSGT00940000158287 #27 ENSGT00390000014757 #28 ENSGT00940000154234.b ENSGT00930000151062 #29 ENSGT00940000160630 #30 ENSGT00390000007055 #31 ENSGT00940000154348.c.b.a #32 ENSGT00390000016223 #33 ENSGT00940000160394.a #34 ENSGT00390000007640.b Muroidea_A ANCESTRAL SPECIES 2 ENSGT00390000003450 #7 ENSGT00940000160201 #8 ENSGT00390000000020.b #9 ENSGT00940000161832.a #10 ENSGT00390000017480 #12 ENSGT00940000158775 #13 ENSGT00390000014065 #14 ENSGT00940000158970 #15 ENSGT00390000016785 #16 ENSGT01020000230346.E #17 ENSGT00940000157349 #18 ENSGT00940000159754 ENSGT00940000157698.b #19 ENSGT00940000156718 #20 ENSGT00940000159068 #21 ENSGT00940000158446 #22 ENSGT00510000047881 #23 ENSGT00950000182973.b.a #24 ENSGT00940000155568 #25 ENSGT00390000012935 #26 ENSGT00960000189374 ENSGT00940000158287 #27 ENSGT00390000014757 #28 ENSGT00940000154234.b ENSGT00930000151062 #29 ENSGT00940000160630 #30 ENSGT00390000007055 #31 ENSGT00940000154348.c.b.a #32 ENSGT00390000016223 #33 ENSGT00940000160394.a #34 ENSGT00390000007640.b Cricetidae ANCESTRAL SPECIES 5 ENSGT00390000003450 #7 ENSGT00940000160201 #8 ENSGT00390000000020.b #9 ENSGT00940000161832.a #10 ENSGT00390000017480 #12 ENSGT00940000158775 #13 ENSGT00390000014065 #14 ENSGT00940000158970 #15 ENSGT00390000016785 #16 ENSGT01020000230346.E #17 ENSGT00940000157349 #18 ENSGT00940000159754 ENSGT00940000157698.b #19 ENSGT00940000156718 #20 ENSGT00940000159068 #21 ENSGT00940000158446 #22 ENSGT00510000047881 #23 ENSGT00950000182973.b.a #24 ENSGT00940000155568 #25 ENSGT00390000012935 #26 ENSGT00940000158287 #27 ENSGT00390000014757 #28 ENSGT00940000154234.b ENSGT00930000151062 #29 ENSGT00940000160630 #30 ENSGT00390000007055 #31 ENSGT00940000154348.c.b.a #32 ENSGT00390000016223 #33 ENSGT00940000160394.a #34 ENSGT00390000007640.b ENSGT00940000156152 #35 Cricetidae_B ANCESTRAL SPECIES 34 ENSGT00390000003450 #7 ENSGT00940000160201 #8 ENSGT00390000000020.b #9 ENSGT00940000161832.a #10 ENSGT00390000017480 #12 ENSGT00940000158775 #13 ENSGT00390000014065 #14 ENSGT00940000158970 #15 ENSGT00390000016785 #16 ENSGT01020000230346.E #17 ENSGT00940000157349 #18 ENSGT00940000159754 ENSGT00940000157698.b #19 ENSGT00940000156718 #20 ENSGT00940000159068 #21 ENSGT00940000158446 #22 ENSGT00510000047881 #23 ENSGT00950000182973.b.a #24 ENSGT00940000155568 #25 ENSGT00390000012935 #26 ENSGT00940000158287 #27 ENSGT00390000014757 #28 ENSGT00940000154234.b ENSGT00930000151062 #29 ENSGT00940000160630 #30 ENSGT00390000007055 #31 ENSGT00940000154348.c.b.a #32 ENSGT00390000016223 #33 ENSGT00940000160394.a #34 ENSGT00390000007640.b ENSGT00940000156152 #35 Northern American deer mouse MODERN SPECIES 17 Nup160 (ENSPEMG00000018101) Fnbp4 (ENSPEMG00000016688) #7 Agbl2 (ENSPEMG00000001437) #8 Mtch2 (ENSPEMG00000010063) #9 C1qtnf4 (ENSPEMG00000024602) #10 Ndufs3 (ENSPEMG00000007248) #12 Kbtbd4 (ENSPEMG00000001992) #13 Ptpmt1 (ENSPEMG00000030250) #14 Celf1 (ENSPEMG00000015644) #15 Rapsn (ENSPEMG00000016952) #16 Slc39a13 (ENSPEMG00000016290) #18 Spi1 (ENSPEMG00000009647) Mybpc3 (ENSPEMG00000009479) #19 Madd (ENSPEMG00000001264) #20 Nr1h3 (ENSPEMG00000018824) #21 Acp2 (ENSPEMG00000011860) #22 Ddb2 (ENSPEMG00000012899) #23 Pacsin3 (ENSPEMG00000018424) #24 Arfgap2 (ENSPEMG00000009220) #25 Cstpp1 (ENSPEMG00000018931) #26 Lrp4 (ENSPEMG00000015598) #27 Ckap5 (ENSPEMG00000007231) #28 F2 (ENSPEMG00000018118) Zfp408 (ENSPEMG00000016757) #29 Arhgap1 (ENSPEMG00000011370) #30 Atg13 (ENSPEMG00000017021) #31 Harbi1 (ENSPEMG00000013606) #32 ENSPEMG00000025318 Ambra1 (ENSPEMG00000005111) #33 Chrm4 (ENSPEMG00000028345) #34 Mdk (ENSPEMG00000014123) Prairie vole MODERN SPECIES 81 Agbl2 (ENSMOCG00000015547) #8 Mtch2 (ENSMOCG00000001577) #9 C1qtnf4 (ENSMOCG00000013500) #10 Ndufs3 (ENSMOCG00000009375) #12 Kbtbd4 (ENSMOCG00000021780) #13 Ptpmt1 (ENSMOCG00000018913) #14 Celf1 (ENSMOCG00000012633) #15 Rapsn (ENSMOCG00000012267) #16 Psmc3 (ENSMOCG00000001464) #17 ENSMOCG00000006097 #18 ENSMOCG00000008195 #18 Spi1 (ENSMOCG00000006114) Mybpc3 (ENSMOCG00000008344) #19 Madd (ENSMOCG00000003278) #20 Nr1h3 (ENSMOCG00000010671) #21 Acp2 (ENSMOCG00000002882) #22 Ddb2 (ENSMOCG00000021291) #23 Pacsin3 (ENSMOCG00000022577) #24 Arfgap2 (ENSMOCG00000016700) #25 Cstpp1 (ENSMOCG00000006672) #26 Lrp4 (ENSMOCG00000005823) #27 Ckap5 (ENSMOCG00000022214) #28 F2 (ENSMOCG00000019585) Arhgap1 (ENSMOCG00000008533) #30 Atg13 (ENSMOCG00000018209) #31 ENSMOCG00000007253 Ambra1 (ENSMOCG00000018792) #33 Chrm4 (ENSMOCG00000016103) #34 Mdk (ENSMOCG00000014474) Dgkz (ENSMOCG00000000694) #35 Creb3l1 (ENSMOCG00000012802) #36 Cricetinae ANCESTRAL SPECIES 1 ENSGT00390000003450 #7 ENSGT00940000160201 #8 ENSGT00390000000020.b #9 ENSGT00940000161832.a #10 ENSGT00390000017480 #12 ENSGT00940000158775 #13 ENSGT00390000014065 #14 ENSGT00940000158970 #15 ENSGT00390000016785 #16 ENSGT01020000230346.E #17 ENSGT00940000157349 #18 ENSGT00940000159754 ENSGT00940000157698.b #19 ENSGT00940000156718 #20 ENSGT00940000159068 #21 ENSGT00940000158446 #22 ENSGT00510000047881 #23 ENSGT00950000182973.b.a #24 ENSGT00940000155568 #25 ENSGT00390000012935 #26 ENSGT00940000158287 #27 ENSGT00390000014757 #28 ENSGT00940000154234.b ENSGT00930000151062 #29 ENSGT00940000160630 #30 ENSGT00390000007055 #31 ENSGT00940000154348.c.b.a #32 ENSGT00390000016223 #33 ENSGT00940000160394.a #34 ENSGT00390000007640.b ENSGT00940000156152 #35 Chinese hamster chok1gshd MODERN SPECIES 188 Fnbp4 (ENSCGRG00001022832) #7 Agbl2 (ENSCGRG00001000549) #8 Mtch2 (ENSCGRG00001024807) #9 C1qtnf4 (ENSCGRG00001007540) #10 Ndufs3 (ENSCGRG00001024136) #12 Kbtbd4 (ENSCGRG00001023919) #13 Ptpmt1 (ENSCGRG00001012152) #14 Celf1 (ENSCGRG00001011274) #15 Rapsn (ENSCGRG00001009650) #16 Psmc3 (ENSCGRG00001005657) #17 Slc39a13 (ENSCGRG00001003447) #18 Spi1 (ENSCGRG00001009684) Mybpc3 (ENSCGRG00001006702) #19 Madd (ENSCGRG00001024681) #20 Nr1h3 (ENSCGRG00001022656) #21 Acp2 (ENSCGRG00001022138) #22 Ddb2 (ENSCGRG00001012939) #23 Pacsin3 (ENSCGRG00001011840) #24 Arfgap2 (ENSCGRG00001010700) #25 Cstpp1 (ENSCGRG00001020042) #26 Lrp4 (ENSCGRG00001018783) #27 Ckap5 (ENSCGRG00001013368) #28 F2 (ENSCGRG00001023426) Zfp408 (ENSCGRG00001023588) #29 Arhgap1 (ENSCGRG00001023260) #30 ENSCGRG00001022859 Atg13 (ENSCGRG00001022112) #31 Harbi1 (ENSCGRG00001021313) #32 Ambra1 (ENSCGRG00001020313) #33 Chrm4 (ENSCGRG00001012019) #34 Mdk (ENSCGRG00001022566) Golden Hamster MODERN SPECIES 618 Nup160 (ENSMAUG00000009877) Agbl2 (ENSMAUG00000013242) #8 Mtch2 (ENSMAUG00000009619) #9 C1qtnf4 (ENSMAUG00000009128) #10 Ndufs3 (ENSMAUG00000010036) #12 Kbtbd4 (ENSMAUG00000009694) #13 Ptpmt1 (ENSMAUG00000010436) #14 Celf1 (ENSMAUG00000009468) #15 Rapsn (ENSMAUG00000008690) #16 Psmc3 (ENSMAUG00000007346) #17 ENSMAUG00000009110 #18 Spi1 (ENSMAUG00000008854) Mybpc3 (ENSMAUG00000008229) #19 Madd (ENSMAUG00000009156) #20 Nr1h3 (ENSMAUG00000008657) #21 Acp2 (ENSMAUG00000007767) #22 Ddb2 (ENSMAUG00000010179) #23 Pacsin3 (ENSMAUG00000009572) #24 Arfgap2 (ENSMAUG00000009218) #25 ENSMAUG00000008870 ENSMAUG00000008742 Cstpp1 (ENSMAUG00000008635) #26 Lrp4 (ENSMAUG00000016435) #27 Ckap5 (ENSMAUG00000012944) #28 F2 (ENSMAUG00000009414) Arhgap1 (ENSMAUG00000012048) #30 Atg13 (ENSMAUG00000011052) #31 Harbi1 (ENSMAUG00000012193) #32 Ambra1 (ENSMAUG00000008821) #33 Chrm4 (ENSMAUG00000007510) #34 Mdk (ENSMAUG00000006759) Murinae ANCESTRAL SPECIES 1 ENSGT00390000003450 #7 ENSGT00940000160201 #8 ENSGT00390000000020.b #9 ENSGT00940000161832.a #10 ENSGT00390000017480 #12 ENSGT00940000158775 #13 ENSGT00390000014065 #14 ENSGT00940000158970 #15 ENSGT00390000016785 #16 ENSGT01020000230346.E #17 ENSGT00940000157349 #18 ENSGT00940000159754 ENSGT00940000157698.b #19 ENSGT00940000156718 #20 ENSGT00940000159068 #21 ENSGT00940000158446 #22 ENSGT00510000047881 #23 ENSGT00950000182973.b.a #24 ENSGT00940000155568 #25 ENSGT00390000012935 #26 ENSGT00960000189374 ENSGT00940000158287 #27 ENSGT00390000014757 #28 ENSGT00940000154234.b ENSGT00930000151062 #29 ENSGT00940000160630 #30 ENSGT00390000007055 #31 ENSGT00940000154348.c.b.a #32 ENSGT00390000016223 #33 ENSGT00940000160394.a #34 ENSGT00390000007640.b Mus ANCESTRAL SPECIES 1 ENSGT00390000003450 #7 ENSGT00940000160201 #8 ENSGT00390000000020.b #9 ENSGT00940000161832.a #10 ENSGT00390000017480 #12 ENSGT00940000158775 #13 ENSGT00390000014065 #14 ENSGT00940000158970 #15 ENSGT00390000016785 #16 ENSGT01020000230346.E #17 ENSGT00940000157349 #18 ENSGT00940000159754 ENSGT00940000157698.b #19 ENSGT00940000156718 #20 ENSGT00940000159068 #21 ENSGT00940000158446 #22 ENSGT00510000047881 #23 ENSGT00950000182973.b.a #24 ENSGT00940000155568 #25 ENSGT00390000012935 #26 ENSGT00960000189374 ENSGT00940000158287 #27 ENSGT00390000014757 #28 ENSGT00940000154234.b ENSGT00930000151062 #29 ENSGT00940000160630 #30 ENSGT00390000007055 #31 ENSGT00940000154348.c.b.a #32 ENSGT00390000016223 #33 ENSGT00940000160394.a #34 ENSGT00390000007640.b Mus_A ANCESTRAL SPECIES ENSGT00390000003450 #7 ENSGT00940000160201 #8 ENSGT00390000000020.b #9 ENSGT00940000161832.a #10 ENSGT00390000017480 #12 ENSGT00940000158775 #13 ENSGT00390000014065 #14 ENSGT00940000158970 #15 ENSGT00390000016785 #16 ENSGT01020000230346.E #17 ENSGT00940000157349 #18 ENSGT00940000159754 ENSGT00940000157698.b #19 ENSGT00940000156718 #20 ENSGT00940000159068 #21 ENSGT00940000158446 #22 ENSGT00510000047881 #23 ENSGT00950000182973.b.a #24 ENSGT00940000155568 #25 ENSGT00390000012935 #26 ENSGT00960000189374 ENSGT00940000158287 #27 ENSGT00390000014757 #28 ENSGT00940000154234.b ENSGT00930000151062 #29 ENSGT00940000160630 #30 ENSGT00390000007055 #31 ENSGT00940000154348.c.b.a #32 ENSGT00390000016223 #33 ENSGT00940000160394.a #34 ENSGT00390000007640.b.g Mus_B ANCESTRAL SPECIES 1 ENSGT00390000003450 #7 ENSGT00940000160201 #8 ENSGT00390000000020.b #9 ENSGT00940000161832.a #10 ENSGT00390000017480 #12 ENSGT00940000158775 #13 ENSGT00390000014065 #14 ENSGT00940000158970 #15 ENSGT00390000016785 #16 ENSGT01020000230346.E #17 ENSGT00940000157349 #18 ENSGT00940000159754 ENSGT00940000157698.b #19 ENSGT00940000156718 #20 ENSGT00940000159068 #21 ENSGT00940000158446 #22 ENSGT00510000047881 #23 ENSGT00950000182973.b.a #24 ENSGT00940000155568 #25 ENSGT00390000012935 #26 ENSGT00960000189374 ENSGT00940000158287 #27 ENSGT00390000014757 #28 ENSGT00940000154234.b ENSGT00930000151062 #29 ENSGT00940000160630 #30 ENSGT00390000007055 #31 ENSGT00940000154348.c.b.a #32 ENSGT00390000016223 #33 ENSGT00940000160394.a #34 ENSGT00390000007640.b.g Mus_C ANCESTRAL SPECIES ENSGT00390000003450 #7 ENSGT00940000160201 #8 ENSGT00390000000020.b #9 ENSGT00940000161832.a #10 ENSGT00390000017480 #12 ENSGT00940000158775 #13 ENSGT00390000014065 #14 ENSGT00940000158970 #15 ENSGT00390000016785 #16 ENSGT01020000230346.E #17 ENSGT00940000157349 #18 ENSGT00940000159754 ENSGT00940000157698.b #19 ENSGT00940000156718 #20 ENSGT00940000159068 #21 ENSGT00940000158446 #22 ENSGT00510000047881 #23 ENSGT00950000182973.b.a #24 ENSGT00940000155568 #25 ENSGT00390000012935 #26 ENSGT00960000189374 ENSGT00940000158287 #27 ENSGT00390000014757 #28 ENSGT00940000154234.b ENSGT00930000151062 #29 ENSGT00940000160630 #30 ENSGT00390000007055 #31 ENSGT00940000154348.c.b.a #32 ENSGT00390000016223 #33 ENSGT00940000160394.a #34 ENSGT00390000007640.b.g spretus MODERN SPECIES 11 Nup160 (MGP_SPRETEiJ_G0024852) Fnbp4 (MGP_SPRETEiJ_G0024853) #7 Agbl2 (MGP_SPRETEiJ_G0024854) #8 Mtch2 (MGP_SPRETEiJ_G0024855) #9 C1qtnf4 (MGP_SPRETEiJ_G0024856) #10 Ndufs3 (MGP_SPRETEiJ_G0024857) #12 Kbtbd4 (MGP_SPRETEiJ_G0024858) #13 Celf1 (MGP_SPRETEiJ_G0024859) #15 Rapsn (MGP_SPRETEiJ_G0024860) #16 Psmc3 (MGP_SPRETEiJ_G0024861) #17 Slc39a13 (MGP_SPRETEiJ_G0024862) #18 Spi1 (MGP_SPRETEiJ_G0024863) Mybpc3 (MGP_SPRETEiJ_G0024864) #19 Madd (MGP_SPRETEiJ_G0024865) #20 Nr1h3 (MGP_SPRETEiJ_G0024866) #21 Acp2 (MGP_SPRETEiJ_G0024867) #22 Ddb2 (MGP_SPRETEiJ_G0024868) #23 Pacsin3 (MGP_SPRETEiJ_G0024869) #24 Arfgap2 (MGP_SPRETEiJ_G0024870) #25 Cstpp1 (MGP_SPRETEiJ_G0024871) #26 Lrp4 (MGP_SPRETEiJ_G0024872) #27 Ckap5 (MGP_SPRETEiJ_G0024873) #28 F2 (MGP_SPRETEiJ_G0024874) Zfp408 (MGP_SPRETEiJ_G0024875) #29 Arhgap1 (MGP_SPRETEiJ_G0024876) #30 Atg13 (MGP_SPRETEiJ_G0024877) #31 Harbi1 (MGP_SPRETEiJ_G0024878) #32 Ambra1 (MGP_SPRETEiJ_G0024879) #33 Chrm4 (MGP_SPRETEiJ_G0024880) #34 Mdk (MGP_SPRETEiJ_G0024881) Dgkz (MGP_SPRETEiJ_G0024882) #35 Steppe mouse MODERN SPECIES 36 Agbl2 (ENSMSIG00000027703) #8 ENSMSIG00000027642 #9 C1qtnf4 (ENSMSIG00000027637) #10 Ndufs3 (ENSMSIG00000027630) #12 Kbtbd4 (ENSMSIG00000027623) #13 ENSMSIG00000027615 #14 Celf1 (ENSMSIG00000027572) #15 ENSMSIG00000027554 Rapsn (ENSMSIG00000027530) #16 Psmc3 (ENSMSIG00000027459) #17 Slc39a13 (ENSMSIG00000027429) #18 Spi1 (ENSMSIG00000027421) Mybpc3 (ENSMSIG00000027308) #19 Madd (ENSMSIG00000021063) #20 Nr1h3 (ENSMSIG00000020950) #21 Acp2 (ENSMSIG00000020936) #22 Ddb2 (ENSMSIG00000020921) #23 Pacsin3 (ENSMSIG00000020892) #24 Arfgap2 (ENSMSIG00000020760) #25 ENSMSIG00000020727 #26 ENSMSIG00000020721 Lrp4 (ENSMSIG00000020667) #27 ENSMSIG00000020658 Ckap5 (ENSMSIG00000020211) #28 F2 (ENSMSIG00000020083) Zfp408 (ENSMSIG00000020068) #29 Arhgap1 (ENSMSIG00000020000) #30 Atg13 (ENSMSIG00000019915) #31 Harbi1 (ENSMSIG00000019911) #32 Ambra1 (ENSMSIG00000019820) #33 Chrm4 (ENSMSIG00000019816) #34 Mouse MODERN SPECIES 11 Fnbp4 (ENSMUSG00000008200) #7 Agbl2 (ENSMUSG00000040812) #8 Mtch2 (ENSMUSG00000027282) #9 C1qtnf4 (ENSMUSG00000040794) #10 Ndufs3 (ENSMUSG00000005510) #12 Kbtbd4 (ENSMUSG00000005505) #13 Ptpmt1 (ENSMUSG00000063235) #14 Celf1 (ENSMUSG00000005506) #15 Rapsn (ENSMUSG00000002104) #16 Psmc3 (ENSMUSG00000002102) #17 Slc39a13 (ENSMUSG00000002105) #18 Spi1 (ENSMUSG00000002111) Mybpc3 (ENSMUSG00000002100) #19 Madd (ENSMUSG00000040687) #20 Nr1h3 (ENSMUSG00000002108) #21 Acp2 (ENSMUSG00000002103) #22 Ddb2 (ENSMUSG00000002109) #23 Pacsin3 (ENSMUSG00000027257) #24 Arfgap2 (ENSMUSG00000027255) #25 Cstpp1 (ENSMUSG00000040591) #26 Lrp4 (ENSMUSG00000027253) #27 Ckap5 (ENSMUSG00000040549) #28 F2 (ENSMUSG00000027249) Zfp408 (ENSMUSG00000075040) #29 Arhgap1 (ENSMUSG00000027247) #30 Atg13 (ENSMUSG00000027244) #31 Harbi1 (ENSMUSG00000027243) #32 Ambra1 (ENSMUSG00000040506) #33 Chrm4 (ENSMUSG00000040495) #34 Mdk (ENSMUSG00000027239) Dgkz (ENSMUSG00000040479) #35 Ryukyu mouse MODERN SPECIES 11 Nup160 (MGP_CAROLIEiJ_G0023941) Fnbp4 (MGP_CAROLIEiJ_G0023942) #7 Agbl2 (MGP_CAROLIEiJ_G0023943) #8 Mtch2 (MGP_CAROLIEiJ_G0023944) #9 Madd (MGP_CAROLIEiJ_G0023945) #20 C1qtnf4 (MGP_CAROLIEiJ_G0023946) #10 Ndufs3 (MGP_CAROLIEiJ_G0023947) #12 Kbtbd4 (MGP_CAROLIEiJ_G0023948) #13 Celf1 (MGP_CAROLIEiJ_G0023949) #15 Rapsn (MGP_CAROLIEiJ_G0023950) #16 Psmc3 (MGP_CAROLIEiJ_G0023951) #17 Slc39a13 (MGP_CAROLIEiJ_G0023952) #18 Spi1 (MGP_CAROLIEiJ_G0023953) Mybpc3 (MGP_CAROLIEiJ_G0023954) #19 Nr1h3 (MGP_CAROLIEiJ_G0023955) #21 Acp2 (MGP_CAROLIEiJ_G0023956) #22 Ddb2 (MGP_CAROLIEiJ_G0023957) #23 Pacsin3 (MGP_CAROLIEiJ_G0023958) #24 Arfgap2 (MGP_CAROLIEiJ_G0023959) #25 Cstpp1 (MGP_CAROLIEiJ_G0023960) #26 MGP_CAROLIEiJ_G0023961 Lrp4 (MGP_CAROLIEiJ_G0023962) #27 Ckap5 (MGP_CAROLIEiJ_G0023963) #28 F2 (MGP_CAROLIEiJ_G0023964) Zfp408 (MGP_CAROLIEiJ_G0023965) #29 Arhgap1 (MGP_CAROLIEiJ_G0023966) #30 Atg13 (MGP_CAROLIEiJ_G0023967) #31 Harbi1 (MGP_CAROLIEiJ_G0023968) #32 Ambra1 (MGP_CAROLIEiJ_G0023969) #33 Chrm4 (MGP_CAROLIEiJ_G0023970) #34 Mdk (MGP_CAROLIEiJ_G0023971) Shrew mouse MODERN SPECIES 16 Nup160 (MGP_PahariEiJ_G0025378) Fnbp4 (MGP_PahariEiJ_G0025379) #7 Agbl2 (MGP_PahariEiJ_G0025380) #8 Mtch2 (MGP_PahariEiJ_G0025381) #9 C1qtnf4 (MGP_PahariEiJ_G0025382) #10 Ndufs3 (MGP_PahariEiJ_G0025383) #12 Kbtbd4 (MGP_PahariEiJ_G0025384) #13 Celf1 (MGP_PahariEiJ_G0025385) #15 Rapsn (MGP_PahariEiJ_G0025386) #16 Psmc3 (MGP_PahariEiJ_G0025387) #17 Slc39a13 (MGP_PahariEiJ_G0025388) #18 Spi1 (MGP_PahariEiJ_G0025389) Mybpc3 (MGP_PahariEiJ_G0025390) #19 Madd (MGP_PahariEiJ_G0025391) #20 Nr1h3 (MGP_PahariEiJ_G0025392) #21 Acp2 (MGP_PahariEiJ_G0025393) #22 Ddb2 (MGP_PahariEiJ_G0025394) #23 Pacsin3 (MGP_PahariEiJ_G0025395) #24 Arfgap2 (MGP_PahariEiJ_G0025396) #25 Cstpp1 (MGP_PahariEiJ_G0025397) #26 MGP_PahariEiJ_G0025398 Lrp4 (MGP_PahariEiJ_G0025399) #27 Ckap5 (MGP_PahariEiJ_G0025400) #28 F2 (MGP_PahariEiJ_G0025401) Zfp408 (MGP_PahariEiJ_G0025402) #29 Arhgap1 (MGP_PahariEiJ_G0025403) #30 Atg13 (MGP_PahariEiJ_G0025404) #31 Harbi1 (MGP_PahariEiJ_G0025405) #32 Ambra1 (MGP_PahariEiJ_G0025406) #33 Chrm4 (MGP_PahariEiJ_G0025407) #34 Mdk (MGP_PahariEiJ_G0025408) Rat MODERN SPECIES 13 Fnbp4 (ENSRNOG00000007241) #7 Agbl2 (ENSRNOG00000008467) #8 Mtch2 (ENSRNOG00000058658) #9 C1qtnf4 (ENSRNOG00000069579) #10 Ndufs3 (ENSRNOG00000009155) #12 Kbtbd4 (ENSRNOG00000009397) #13 Ptpmt1 (ENSRNOG00000009723) #14 Celf1 (ENSRNOG00000010379) #15 Rapsn (ENSRNOG00000011208) #16 Psmc3 (ENSRNOG00000011414) #17 Slc39a13 (ENSRNOG00000011981) #18 Spi1 (ENSRNOG00000012172) Mybpc3 (ENSRNOG00000012307) #19 Madd (ENSRNOG00000012568) #20 Nr1h3 (ENSRNOG00000013172) #21 Acp2 (ENSRNOG00000013594) #22 Ddb2 (ENSRNOG00000014071) #23 Pacsin3 (ENSRNOG00000014204) #24 Arfgap2 (ENSRNOG00000014429) #25 Cstpp1 (ENSRNOG00000014798) #26 Lrp4 (ENSRNOG00000015285) #27 Ckap5 (ENSRNOG00000016067) #28 F2 (ENSRNOG00000016325) ENSRNOG00000070459 #29 Arhgap1 (ENSRNOG00000016610) #30 Atg13 (ENSRNOG00000016984) #31 Ambra1 (ENSRNOG00000017422) #33 Chrm4 (ENSRNOG00000017556) #34 Mdk (ENSRNOG00000017560) Dgkz (ENSRNOG00000017737) #35 Creb3l1 (ENSRNOG00000005413) #36 Upper Galilee mountains blind mole rat MODERN SPECIES 1238 Agbl2 (ENSNGAG00000000234) #8 Mtch2 (ENSNGAG00000003094) #9 C1qtnf4 (ENSNGAG00000009680) #10 Ndufs3 (ENSNGAG00000012046) #12 Kbtbd4 (ENSNGAG00000000276) #13 Ptpmt1 (ENSNGAG00000017776) #14 ENSNGAG00000018260 Celf1 (ENSNGAG00000017390) #15 Rapsn (ENSNGAG00000007295) #16 Psmc3 (ENSNGAG00000017843) #17 Slc39a13 (ENSNGAG00000017536) #18 Spi1 (ENSNGAG00000010713) Mybpc3 (ENSNGAG00000000260) #19 Madd (ENSNGAG00000017768) #20 Nr1h3 (ENSNGAG00000015402) #21 Acp2 (ENSNGAG00000007455) #22 Ddb2 (ENSNGAG00000017336) #23 Pacsin3 (ENSNGAG00000014205) #24 Arfgap2 (ENSNGAG00000009124) #25 Cstpp1 (ENSNGAG00000000171) #26 Lrp4 (ENSNGAG00000020436) #27 Ckap5 (ENSNGAG00000001579) #28 F2 (ENSNGAG00000010351) Zfp408 (ENSNGAG00000000309) #29 Arhgap1 (ENSNGAG00000013969) #30 Atg13 (ENSNGAG00000015785) #31 ENSNGAG00000012504 Lesser Egyptian jerboa MODERN SPECIES 62 Nup160 (ENSJJAG00000020091) Fnbp4 (ENSJJAG00000009203) #7 Agbl2 (ENSJJAG00000022894) #8 Mtch2 (ENSJJAG00000011880) #9 C1qtnf4 (ENSJJAG00000023278) #10 Ndufs3 (ENSJJAG00000023557) #12 Kbtbd4 (ENSJJAG00000020543) #13 Celf1 (ENSJJAG00000020280) #15 Rapsn (ENSJJAG00000020297) #16 Psmc3 (ENSJJAG00000021354) #17 Slc39a13 (ENSJJAG00000007370) #18 Spi1 (ENSJJAG00000019221) Mybpc3 (ENSJJAG00000018706) #19 Madd (ENSJJAG00000015606) #20 Nr1h3 (ENSJJAG00000020697) #21 Acp2 (ENSJJAG00000019515) #22 Ddb2 (ENSJJAG00000016552) #23 Pacsin3 (ENSJJAG00000023252) #24 Arfgap2 (ENSJJAG00000003129) #25 Cstpp1 (ENSJJAG00000008330) #26 Lrp4 (ENSJJAG00000014851) #27 Ckap5 (ENSJJAG00000023265) #28 F2 (ENSJJAG00000005619) Zfp408 (ENSJJAG00000015381) #29 Arhgap1 (ENSJJAG00000022610) #30 Atg13 (ENSJJAG00000024173) #31 ENSJJAG00000015195 ENSJJAG00000016975 Ambra1 (ENSJJAG00000004138) #33 Chrm4 (ENSJJAG00000010466) #34 Mdk (ENSJJAG00000023305) Kangaroo rat MODERN SPECIES 444 Nup160 (ENSDORG00000004246) Fnbp4 (ENSDORG00000004245) #7 Agbl2 (ENSDORG00000025903) #8 Mtch2 (ENSDORG00000001511) #9 C1qtnf4 (ENSDORG00000015597) #10 Kbtbd4 (ENSDORG00000015593) #13 Ptpmt1 (ENSDORG00000015591) #14 Celf1 (ENSDORG00000013721) #15 Rapsn (ENSDORG00000000757) #16 Psmc3 (ENSDORG00000000756) #17 Slc39a13 (ENSDORG00000000753) #18 Spi1 (ENSDORG00000007758) Mybpc3 (ENSDORG00000007751) #19 Madd (ENSDORG00000007749) #20 Nr1h3 (ENSDORG00000007747) #21 Acp2 (ENSDORG00000007743) #22 Ddb2 (ENSDORG00000007741) #23 ENSDORG00000013060 #24 Arfgap2 (ENSDORG00000013057) #25 Cstpp1 (ENSDORG00000013052) #26 Lrp4 (ENSDORG00000001785) #27 Ckap5 (ENSDORG00000011373) #28 F2 (ENSDORG00000029579) Zfp408 (ENSDORG00000000387) #29 Arhgap1 (ENSDORG00000000385) #30 Atg13 (ENSDORG00000000382) #31 ENSDORG00000028941 Ambra1 (ENSDORG00000008382) #33 Chrm4 (ENSDORG00000024984) #34 Mdk (ENSDORG00000029447) Dgkz (ENSDORG00000008377) #35 Rodentia_A ANCESTRAL SPECIES 1 ENSGT00940000160201 #8 ENSGT00390000000020.b #9 ENSGT00940000161832.a #10 ENSGT00940000154479.a #11 ENSGT00390000017480 #12 ENSGT00940000158775 #13 ENSGT00390000014065 #14 ENSGT00940000158970 #15 ENSGT00390000016785 #16 ENSGT01020000230346.E #17 ENSGT00940000157349 #18 ENSGT00940000159754 ENSGT00940000157698.b #19 ENSGT00940000156718 #20 ENSGT00940000159068 #21 ENSGT00940000158446 #22 ENSGT00510000047881 #23 ENSGT00950000182973.b.a #24 ENSGT00940000155568 #25 ENSGT00390000012935 #26 ENSGT00940000158287 #27 ENSGT00390000014757 #28 ENSGT00940000154234.b ENSGT00930000151062 #29 ENSGT00940000160630 #30 ENSGT00390000007055 #31 ENSGT00940000154348.c.b.a #32 ENSGT00390000016223 #33 ENSGT00940000160394.a #34 ENSGT00390000007640.b ENSGT00940000156152 #35 Sciuridae ANCESTRAL SPECIES 2 ENSGT00940000160201 #8 ENSGT00390000000020.b #9 ENSGT00940000161832.a #10 ENSGT00940000154479.a #11 ENSGT00390000017480 #12 ENSGT00940000158775 #13 ENSGT00390000014065 #14 ENSGT00940000158970 #15 ENSGT00390000016785 #16 ENSGT01020000230346.E #17 ENSGT00940000157349 #18 ENSGT00940000159754 ENSGT00940000157698.b #19 ENSGT00940000156718 #20 ENSGT00940000159068 #21 ENSGT00940000158446 #22 ENSGT00510000047881 #23 ENSGT00950000182973.b.a #24 ENSGT00940000155568 #25 ENSGT00390000012935 #26 ENSGT00940000158287 #27 ENSGT00390000014757 #28 ENSGT00940000154234.b ENSGT00930000151062 #29 ENSGT00940000160630 #30 ENSGT00390000007055 #31 ENSGT00940000154348.c.b.a #32 ENSGT00390000016223 #33 ENSGT00940000160394.a #34 ENSGT00390000007640.b ENSGT00940000156152 #35 Marmotini ANCESTRAL SPECIES 22 ENSGT00940000160201 #8 ENSGT00390000000020.b.e #9 ENSGT00940000161832.a #10 ENSGT00940000154479.a #11 ENSGT00390000017480 #12 ENSGT00940000158775 #13 ENSGT00390000014065 #14 ENSGT00940000158970 #15 ENSGT00390000016785 #16 ENSGT01020000230346.E #17 ENSGT00940000157349 #18 ENSGT00940000159754 ENSGT00940000157698.b #19 ENSGT00940000156718 #20 ENSGT00940000159068 #21 ENSGT00940000158446 #22 ENSGT00510000047881 #23 ENSGT00950000182973.b.a #24 ENSGT00940000155568 #25 ENSGT00390000012935 #26 ENSGT00940000158287 #27 ENSGT00390000014757 #28 ENSGT00940000154234.b ENSGT00930000151062 #29 ENSGT00940000160630 #30 ENSGT00390000007055 #31 ENSGT00940000154348.c.b.a #32 ENSGT00390000016223 #33 ENSGT00940000160394.a #34 ENSGT00390000007640.b ENSGT00940000156152 #35 Marmotini_b ANCESTRAL SPECIES 23 ENSGT00940000160201 #8 ENSGT00390000000020.b.e #9 ENSGT00940000161832.a #10 ENSGT00940000154479.a #11 ENSGT00390000017480 #12 ENSGT00940000158775 #13 ENSGT00390000014065 #14 ENSGT00940000158970 #15 ENSGT00390000016785 #16 ENSGT01020000230346.E #17 ENSGT00940000157349 #18 ENSGT00940000159754 ENSGT00940000157698.b #19 ENSGT00940000156718 #20 ENSGT00940000159068 #21 ENSGT00940000158446 #22 ENSGT00510000047881 #23 ENSGT00950000182973.b.a #24 ENSGT00940000155568 #25 ENSGT00390000012935 #26 ENSGT00940000158287 #27 ENSGT00390000014757 #28 ENSGT00940000154234.b ENSGT00930000151062 #29 ENSGT00940000160630 #30 ENSGT00390000007055 #31 ENSGT00940000154348.c.b.a #32 ENSGT00390000016223 #33 ENSGT00940000160394.a #34 ENSGT00390000007640.b ENSGT00940000156152 #35 Arctic ground squirrel MODERN SPECIES 208 MTCH2 (ENSUPAG00010014096) #9 C1QTNF4 (ENSUPAG00010014090) #10 FAM180B (ENSUPAG00010014076) #11 NDUFS3 (ENSUPAG00010014067) #12 KBTBD4 (ENSUPAG00010014056) #13 ENSUPAG00010014045 CELF1 (ENSUPAG00010013973) #15 RAPSN (ENSUPAG00010013926) #16 PSMC3 (ENSUPAG00010013908) #17 SLC39A13 (ENSUPAG00010013855) #18 SPI1 (ENSUPAG00010013850) ENSUPAG00010013841 MYBPC3 (ENSUPAG00010013812) #19 MADD (ENSUPAG00010011229) #20 NR1H3 (ENSUPAG00010011188) #21 ACP2 (ENSUPAG00010011162) #22 DDB2 (ENSUPAG00010011149) #23 PACSIN3 (ENSUPAG00010011141) #24 ARFGAP2 (ENSUPAG00010011117) #25 CSTPP1 (ENSUPAG00010011093) #26 LRP4 (ENSUPAG00010011049) #27 CKAP5 (ENSUPAG00010010730) #28 F2 (ENSUPAG00010010714) ZNF408 (ENSUPAG00010010704) #29 ARHGAP1 (ENSUPAG00010010696) #30 ATG13 (ENSUPAG00010010621) #31 HARBI1 (ENSUPAG00010010611) #32 AMBRA1 (ENSUPAG00010010430) #33 CHRM4 (ENSUPAG00010010417) #34 MDK (ENSUPAG00010010379) DGKZ (ENSUPAG00010010211) #35 Squirrel MODERN SPECIES 162 AGBL2 (ENSSTOG00000003491) #8 ENSSTOG00000028441 #9 C1QTNF4 (ENSSTOG00000024273) #10 FAM180B (ENSSTOG00000000628) #11 NDUFS3 (ENSSTOG00000000622) #12 KBTBD4 (ENSSTOG00000020864) #13 PTPMT1 (ENSSTOG00000019770) #14 CELF1 (ENSSTOG00000000613) #15 RAPSN (ENSSTOG00000011047) #16 PSMC3 (ENSSTOG00000011038) #17 SLC39A13 (ENSSTOG00000027722) #18 SPI1 (ENSSTOG00000022735) MYBPC3 (ENSSTOG00000026473) #19 MADD (ENSSTOG00000007626) #20 NR1H3 (ENSSTOG00000007611) #21 ACP2 (ENSSTOG00000007586) #22 DDB2 (ENSSTOG00000007571) #23 PACSIN3 (ENSSTOG00000007547) #24 ARFGAP2 (ENSSTOG00000007524) #25 CSTPP1 (ENSSTOG00000007512) #26 LRP4 (ENSSTOG00000005236) #27 CKAP5 (ENSSTOG00000005158) #28 F2 (ENSSTOG00000005130) ZNF408 (ENSSTOG00000005114) #29 ARHGAP1 (ENSSTOG00000026557) #30 ATG13 (ENSSTOG00000005077) #31 HARBI1 (ENSSTOG00000005072) #32 AMBRA1 (ENSSTOG00000019411) #33 CHRM4 (ENSSTOG00000022455) #34 MDK (ENSSTOG00000027636) DGKZ (ENSSTOG00000012704) #35 Alpin marmot MODERN SPECIES 3 ENSMMMG00000015743 ENSMMMG00000015697 #8 ENSMMMG00000015683 #9 FAM180B (ENSMMMG00000015675) #11 NDUFS3 (ENSMMMG00000015667) #12 KBTBD4 (ENSMMMG00000015654) #13 ENSMMMG00000015652 CELF1 (ENSMMMG00000015346) #15 RAPSN (ENSMMMG00000015294) #16 PSMC3 (ENSMMMG00000015270) #17 SLC39A13 (ENSMMMG00000015224) #18 SPI1 (ENSMMMG00000015212) MYBPC3 (ENSMMMG00000015189) #19 MADD (ENSMMMG00000014606) #20 NR1H3 (ENSMMMG00000014541) #21 ACP2 (ENSMMMG00000014527) #22 DDB2 (ENSMMMG00000014518) #23 PACSIN3 (ENSMMMG00000014498) #24 ARFGAP2 (ENSMMMG00000014424) #25 CSTPP1 (ENSMMMG00000014382) #26 LRP4 (ENSMMMG00000014335) #27 CKAP5 (ENSMMMG00000013993) #28 F2 (ENSMMMG00000013961) ZNF408 (ENSMMMG00000013944) #29 ARHGAP1 (ENSMMMG00000013934) #30 ATG13 (ENSMMMG00000013875) #31 HARBI1 (ENSMMMG00000013860) #32 AMBRA1 (ENSMMMG00000013284) #33 CHRM4 (ENSMMMG00000013278) #34 MDK (ENSMMMG00000013259) DGKZ (ENSMMMG00000013155) #35 Eurasian red squirrel MODERN SPECIES 2 FAM180B (ENSSVLG00005009289) #11 NDUFS3 (ENSSVLG00005009316) #12 KBTBD4 (ENSSVLG00005009359) #13 PTPMT1 (ENSSVLG00005009417) #14 CELF1 (ENSSVLG00005009492) #15 RAPSN (ENSSVLG00005009920) #16 ENSSVLG00005009993 #17 ENSSVLG00005010167 #18 ENSSVLG00005010225 #17 ENSSVLG00005010302 #18 SPI1 (ENSSVLG00005010597) MYBPC3 (ENSSVLG00005010729) #19 MADD (ENSSVLG00005011762) #20 ENSSVLG00005012055 NR1H3 (ENSSVLG00005012159) #21 ACP2 (ENSSVLG00005012397) #22 DDB2 (ENSSVLG00005012634) #23 PACSIN3 (ENSSVLG00005013010) #24 ARFGAP2 (ENSSVLG00005013354) #25 CSTPP1 (ENSSVLG00005013495) #26 LRP4 (ENSSVLG00005013702) #27 CKAP5 (ENSSVLG00005013939) #28 F2 (ENSSVLG00005014116) ARHGAP1 (ENSSVLG00005014685) #30 ENSSVLG00005014869 #31 HARBI1 (ENSSVLG00005015510) #32 AMBRA1 (ENSSVLG00005015569) #33 CHRM4 (ENSSVLG00005015740) #34 MDK (ENSSVLG00005015782) DGKZ (ENSSVLG00005015887) #35 ENSSVLG00005015926 Hystricomorpha ANCESTRAL SPECIES 16 ENSGT00390000003450 #7 ENSGT00940000160201 #8 ENSGT00390000000020.b #9 ENSGT00940000161832.a #10 ENSGT00390000017480 #12 ENSGT00940000158775 #13 ENSGT00390000014065 #14 ENSGT00940000158970 #15 ENSGT00390000016785 #16 ENSGT01020000230346.E #17 ENSGT00940000157349 #18 ENSGT00940000159754 ENSGT00940000157698.b #19 ENSGT00940000156718 #20 ENSGT00940000159068 #21 ENSGT00940000158446 #22 ENSGT00510000047881 #23 ENSGT00950000182973.b.a #24 ENSGT00940000155568 #25 ENSGT00390000012935 #26 ENSGT00940000158287 #27 ENSGT00390000014757 #28 ENSGT00940000154234.b ENSGT00940000160630 #30 ENSGT00390000007055 #31 ENSGT00940000154348.c.b.a #32 ENSGT00390000016223 #33 ENSGT00940000160394.a #34 ENSGT00390000007640.b ENSGT00940000156152 #35 ENSGT00860000136066 Hystricomorpha_a ANCESTRAL SPECIES 12 ENSGT00390000003450 #7 ENSGT00940000160201 #8 ENSGT00390000000020.b #9 ENSGT00940000161832.a #10 ENSGT00390000017480 #12 ENSGT00940000158775 #13 ENSGT00390000014065 #14 ENSGT00940000158970 #15 ENSGT00390000016785 #16 ENSGT01020000230346.E #17 ENSGT00940000157349 #18 ENSGT00940000159754 ENSGT00940000157698.b #19 ENSGT00940000156718 #20 ENSGT00940000159068 #21 ENSGT00940000158446 #22 ENSGT00510000047881 #23 ENSGT00950000182973.b.a #24 ENSGT00940000155568 #25 ENSGT00390000012935 #26 ENSGT00940000158287 #27 ENSGT00390000014757 #28 ENSGT00940000154234.b ENSGT00940000160630 #30 ENSGT00390000007055 #31 ENSGT00940000154348.c.b.a #32 ENSGT00390000016223 #33 ENSGT00940000160394.a #34 ENSGT00390000007640.b ENSGT00940000156152 #35 ENSGT00860000136066 Guinea pig MODERN SPECIES 72 FNBP4 (ENSCPOG00000000320) #7 AGBL2 (ENSCPOG00000003935) #8 MTCH2 (ENSCPOG00000006293) #9 C1QTNF4 (ENSCPOG00000023948) #10 NDUFS3 (ENSCPOG00000006141) #12 KBTBD4 (ENSCPOG00000019448) #13 PTPMT1 (ENSCPOG00000031147) #14 CELF1 (ENSCPOG00000036381) #15 RAPSN (ENSCPOG00000015456) #16 PSMC3 (ENSCPOG00000008176) #17 SLC39A13 (ENSCPOG00000008169) #18 SPI1 (ENSCPOG00000022138) MYBPC3 (ENSCPOG00000013368) #19 MADD (ENSCPOG00000013364) #20 NR1H3 (ENSCPOG00000013362) #21 ACP2 (ENSCPOG00000013359) #22 DDB2 (ENSCPOG00000013358) #23 PACSIN3 (ENSCPOG00000013356) #24 ARFGAP2 (ENSCPOG00000013352) #25 CSTPP1 (ENSCPOG00000020334) #26 LRP4 (ENSCPOG00000007072) #27 CKAP5 (ENSCPOG00000007054) #28 F2 (ENSCPOG00000026682) ARHGAP1 (ENSCPOG00000013046) #30 ATG13 (ENSCPOG00000013042) #31 HARBI1 (ENSCPOG00000037304) #32 AMBRA1 (ENSCPOG00000007341) #33 CHRM4 (ENSCPOG00000020788) #34 MDK (ENSCPOG00000007340) DGKZ (ENSCPOG00000009636) #35 CREB3L1 (ENSCPOG00000010073) #36 Hystricomorpha_b ANCESTRAL SPECIES 10 ENSGT00390000000972 ENSGT00390000003450 #7 ENSGT00940000160201 #8 ENSGT00390000000020.b #9 ENSGT00940000161832.a #10 ENSGT00390000017480 #12 ENSGT00940000158775 #13 ENSGT00940000158970 #15 ENSGT00390000016785 #16 ENSGT01020000230346.E #17 ENSGT00940000157349 #18 ENSGT00940000159754 ENSGT00940000157698.b #19 ENSGT00940000156718 #20 ENSGT00940000159068 #21 ENSGT00940000158446 #22 ENSGT00510000047881 #23 ENSGT00950000182973.b.a #24 ENSGT00940000155568 #25 ENSGT00390000012935 #26 ENSGT00940000158287 #27 ENSGT00390000014757 #28 ENSGT00940000154234.b ENSGT00940000160630 #30 ENSGT00390000007055 #31 ENSGT00940000154348.c.b.a #32 ENSGT00390000016223 #33 ENSGT00940000160394.a #34 ENSGT00390000007640.b ENSGT00940000156152 #35 ENSGT00860000136066 Long-tailed chinchilla MODERN SPECIES 129 PTPRJ (ENSCLAG00000015568) NUP160 (ENSCLAG00000015457) FNBP4 (ENSCLAG00000014534) #7 MTCH2 (ENSCLAG00000012026) #9 C1QTNF4 (ENSCLAG00000015186) #10 NDUFS3 (ENSCLAG00000014873) #12 KBTBD4 (ENSCLAG00000016255) #13 CELF1 (ENSCLAG00000011791) #15 RAPSN (ENSCLAG00000015497) #16 PSMC3 (ENSCLAG00000013916) #17 SLC39A13 (ENSCLAG00000014480) #18 SPI1 (ENSCLAG00000017201) MYBPC3 (ENSCLAG00000015418) #19 MADD (ENSCLAG00000012503) #20 NR1H3 (ENSCLAG00000013563) #21 ACP2 (ENSCLAG00000014608) #22 DDB2 (ENSCLAG00000016473) #23 ENSCLAG00000012709 #24 ARFGAP2 (ENSCLAG00000016467) #25 CSTPP1 (ENSCLAG00000014110) #26 LRP4 (ENSCLAG00000016159) #27 CKAP5 (ENSCLAG00000015801) #28 F2 (ENSCLAG00000015618) ARHGAP1 (ENSCLAG00000013542) #30 ATG13 (ENSCLAG00000015328) #31 HARBI1 (ENSCLAG00000013578) #32 AMBRA1 (ENSCLAG00000015156) #33 CHRM4 (ENSCLAG00000013251) #34 MDK (ENSCLAG00000014462) DGKZ (ENSCLAG00000016057) #35 ENSCLAG00000014194 Degu MODERN SPECIES 59 PTPRJ (ENSODEG00000016025) NUP160 (ENSODEG00000015381) FNBP4 (ENSODEG00000016574) #7 AGBL2 (ENSODEG00000016111) #8 MTCH2 (ENSODEG00000015416) #9 NDUFS3 (ENSODEG00000015948) #12 KBTBD4 (ENSODEG00000015830) #13 CELF1 (ENSODEG00000015204) #15 RAPSN (ENSODEG00000015194) #16 ENSODEG00000016550 #17 SLC39A13 (ENSODEG00000015895) #18 SPI1 (ENSODEG00000015369) MYBPC3 (ENSODEG00000016030) #19 MADD (ENSODEG00000017645) #20 NR1H3 (ENSODEG00000016180) #21 ACP2 (ENSODEG00000015528) #22 ENSODEG00000015965 #24 ENSODEG00000016456 #25 CSTPP1 (ENSODEG00000016656) #26 LRP4 (ENSODEG00000015720) #27 CKAP5 (ENSODEG00000016409) #28 F2 (ENSODEG00000016157) ARHGAP1 (ENSODEG00000016156) #30 ATG13 (ENSODEG00000017294) #31 ENSODEG00000016339 AMBRA1 (ENSODEG00000016633) #33 CHRM4 (ENSODEG00000020352) #34 MDK (ENSODEG00000015931) DGKZ (ENSODEG00000016309) #35 ENSODEG00000016420 #35 ENSODEG00000016039 Naked mole-rat female MODERN SPECIES 14 ENSHGLG00000039374 ENSHGLG00000008506 ENSHGLG00000043784 MTCH2 (ENSHGLG00000017536) #9 FAM180B (ENSHGLG00000038229) #11 NDUFS3 (ENSHGLG00000018368) #12 KBTBD4 (ENSHGLG00000047234) #13 ENSHGLG00000037048 ENSHGLG00000006909 #15 RAPSN (ENSHGLG00000008521) #16 PSMC3 (ENSHGLG00000005713) #17 SLC39A13 (ENSHGLG00000041087) #18 ENSHGLG00000011456 ENSHGLG00000044290 #19 NR1H3 (ENSHGLG00000014541) #21 ENSHGLG00000036516 #22 DDB2 (ENSHGLG00000018689) #23 ENSHGLG00000040462 #25 CSTPP1 (ENSHGLG00000018725) #26 ARHGAP1 (ENSHGLG00000017685) #30 ENSHGLG00000013428 #31 ENSHGLG00000018447 #32 AMBRA1 (ENSHGLG00000017564) #33 ENSHGLG00000034290 ENSHGLG00000042531 ENSHGLG00000032476 #35 CREB3L1 (ENSHGLG00000048284) #36 ENSHGLG00000033741 ENSHGLG00000037709 #37 ENSHGLG00000050302 ENSHGLG00000032419 Tree shrew MODERN SPECIES 1561 ENSTBEG00000001919 MYBPC3 (ENSTBEG00000000966) #19 MADD (ENSTBEG00000000554) #20 NR1H3 (ENSTBEG00000000492) #21 ACP2 (ENSTBEG00000000444) #22 DDB2 (ENSTBEG00000000275) #23