Bilateria	ANCESTRAL SPECIES																	ENSGT00940000156500 #22
Chordata	ANCESTRAL SPECIES																	ENSGT00940000156500 #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000156500 #22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000156500 #22
Euteleostomi	ANCESTRAL SPECIES	54																ENSGT00940000156500 #22	ENSGT00940000165015	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00940000182276	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641
Sarcopterygii	ANCESTRAL SPECIES	91	ENSGT01030000234510.a.a.a.a.a.a	ENSGT01030000234510.a.a.b	ENSGT00940000157031	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000171800	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000165015	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00940000182276	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858
Tetrapoda	ANCESTRAL SPECIES	1	ENSGT00940000157031	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000165015	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00940000182276	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641
Amniota	ANCESTRAL SPECIES	3	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000165015	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00940000182276	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641
Mammalia	ANCESTRAL SPECIES	3	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00940000182276	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858
Theria	ANCESTRAL SPECIES	7	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00940000182276	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858
Eutheria	ANCESTRAL SPECIES	20	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00940000166650	ENSGT00920000149172 #25	ENSGT00940000182276	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641
Boreoeutheria	ANCESTRAL SPECIES	22	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00940000166650	ENSGT00920000149172 #25	ENSGT00940000182276	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00910000145708	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616
Euarchontoglires	ANCESTRAL SPECIES	22	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00910000145708	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858
Primates	ANCESTRAL SPECIES	24	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847.a #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00910000145708	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858
Haplorrhini	ANCESTRAL SPECIES	25	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847.a #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00910000145708	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858
Simiiformes	ANCESTRAL SPECIES	24	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847.a #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000166220 #27	ENSGT00940000160839 #28	ENSGT00910000145708	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641
Platyrrhini	ANCESTRAL SPECIES	26	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847.a #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000166220 #27	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858
Mas night monkey	MODERN SPECIES	712	DSEL (ENSANAG00000012597) #7	TMX3 (ENSANAG00000035190) #8	ENSANAG00000025522 #9	DOK6 (ENSANAG00000032444) #10	CD226 (ENSANAG00000021699) #11	ENSANAG00000028436 #12	RTTN (ENSANAG00000030012) #13	SOCS6 (ENSANAG00000013654) #14	CBLN2 (ENSANAG00000032460) #15	NETO1 (ENSANAG00000024199) #16	FBXO15 (ENSANAG00000023790) #17	TIMM21 (ENSANAG00000026364) #18	CYB5A (ENSANAG00000020201) #19	C18orf63 (ENSANAG00000028286) #20	DIPK1C (ENSANAG00000028265) #21	CNDP2 (ENSANAG00000035349) #22	CNDP1 (ENSANAG00000031126) #23	ZNF407 (ENSANAG00000026344) #24	PTGR3 (ENSANAG00000035661) #25	TSHZ1 (ENSANAG00000016880) #26	ENSANAG00000035939 #27	ZNF516 (ENSANAG00000024430) #28	ENSANAG00000038453 #29	ZNF236 (ENSANAG00000022552) #30	MBP (ENSANAG00000027357) #31	GALR1 (ENSANAG00000030151) #32	SALL3 (ENSANAG00000032412) #33	ENSANAG00000020890 #34
Cebidae	ANCESTRAL SPECIES	28	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847.a #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000166220 #27	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Marmoset	MODERN SPECIES	4	ENSCJAG00000084899	ENSCJAG00000072047	SOCS6 (ENSCJAG00000022864) #14	ENSCJAG00000081505	ENSCJAG00000071876	ENSCJAG00000054330	CBLN2 (ENSCJAG00000084858) #15	NETO1 (ENSCJAG00000003126) #16	ENSCJAG00000073296	FBXO15 (ENSCJAG00000003151) #17	TIMM21 (ENSCJAG00000043210) #18	ENSCJAG00000065780	CYB5A (ENSCJAG00000003163) #19	C18orf63 (ENSCJAG00000003172) #20	DIPK1C (ENSCJAG00000003178) #21	CNDP2 (ENSCJAG00000085960) #22	CNDP1 (ENSCJAG00000003184) #23	ZNF407 (ENSCJAG00000003204) #24	PTGR3 (ENSCJAG00000003219) #25	TSHZ1 (ENSCJAG00000046603) #26	ENSCJAG00000076287	ZNF516 (ENSCJAG00000022733) #28	ENSCJAG00000082701	ENSCJAG00000084473	ZNF236 (ENSCJAG00000008039) #30	MBP (ENSCJAG00000047439) #31	ENSCJAG00000080817	ENSCJAG00000062549	ENSCJAG00000063009	SALL3 (ENSCJAG00000007332) #33	ATP9B (ENSCJAG00000007347) #34
Cebidae_a	ANCESTRAL SPECIES	23	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847.a #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000166220 #27	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Bolivian squirrel monkey	MODERN SPECIES	58	CD226 (ENSSBOG00000032857) #11	ENSSBOG00000024700 #12	RTTN (ENSSBOG00000006589) #13	SOCS6 (ENSSBOG00000020065) #14	ENSSBOG00000010853	ENSSBOG00000024747	CBLN2 (ENSSBOG00000019328) #15	NETO1 (ENSSBOG00000035887) #16	ENSSBOG00000033127	ENSSBOG00000026756	FBXO15 (ENSSBOG00000035966) #17	TIMM21 (ENSSBOG00000034325) #18	CYB5A (ENSSBOG00000006601) #19	C18orf63 (ENSSBOG00000027206) #20	DIPK1C (ENSSBOG00000024590) #21	CNDP2 (ENSSBOG00000027831) #22	CNDP1 (ENSSBOG00000020895) #23	ZNF407 (ENSSBOG00000025007) #24	PTGR3 (ENSSBOG00000035548) #25	TSHZ1 (ENSSBOG00000017309) #26	ENSSBOG00000005717 #27	ZNF516 (ENSSBOG00000027376) #28	ENSSBOG00000025494 #29	ZNF236 (ENSSBOG00000029994) #30	MBP (ENSSBOG00000030678) #31	ENSSBOG00000025895	SALL3 (ENSSBOG00000023380) #33	ATP9B (ENSSBOG00000034933) #34	CTDP1 (ENSSBOG00000025960)	KCNG2 (ENSSBOG00000022849)	SLC66A2 (ENSSBOG00000027796)
Capuchin	MODERN SPECIES	49	ENSCCAG00000035711	TMX3 (ENSCCAG00000034310) #8	CCDC102B (ENSCCAG00000022404)	DOK6 (ENSCCAG00000035565) #10	CD226 (ENSCCAG00000023410) #11	ENSCCAG00000025716	RTTN (ENSCCAG00000033623) #13	SOCS6 (ENSCCAG00000011029) #14	CBLN2 (ENSCCAG00000037222) #15	NETO1 (ENSCCAG00000034235) #16	FBXO15 (ENSCCAG00000025771) #17	ENSCCAG00000021881 #18	CYB5A (ENSCCAG00000029960) #19	C18orf63 (ENSCCAG00000023366) #20	DIPK1C (ENSCCAG00000022135) #21	CNDP2 (ENSCCAG00000031433) #22	CNDP1 (ENSCCAG00000029722) #23	ZNF407 (ENSCCAG00000023084) #24	ZADH2 (ENSCCAG00000026690) #25	TSHZ1 (ENSCCAG00000020568) #26	ENSCCAG00000024868 #27	ZNF516 (ENSCCAG00000027802) #28	ZNF236 (ENSCCAG00000026594) #30	ENSCCAG00000022455 #29	MBP (ENSCCAG00000026758) #31	ENSCCAG00000021014
Catarrhini	ANCESTRAL SPECIES	23	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847.a #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00910000146991	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00910000147812	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000166968	ENSGT00910000147830	ENSGT00940000166220 #27	ENSGT00940000160839 #28	ENSGT00910000145708	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33
Hominoidea	ANCESTRAL SPECIES	24	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847.a #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00910000146991	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00910000147812	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000166968	ENSGT00910000147830	ENSGT00940000166220 #27	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34
Hominidae	ANCESTRAL SPECIES	24	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847.a #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00910000146991	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00910000147812	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000166968	ENSGT00940000166220 #27	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	26	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847.a #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00910000146991	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00910000147812	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000166968	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641
Homo/Pan group	ANCESTRAL SPECIES	25	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847.a #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00910000146991	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000166968	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858
Pan	ANCESTRAL SPECIES	24	ENSGT00940000166009.b.a	ENSGT00930000151022.d #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847.a #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00910000146991	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000166968	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858
Chimpanzee	MODERN SPECIES	9	CCDC102B (ENSPTRG00000010100)	DOK6 (ENSPTRG00000046320) #10	CD226 (ENSPTRG00000010102) #11	RTTN (ENSPTRG00000010103) #13	SOCS6 (ENSPTRG00000010105) #14	ENSPTRG00000051922	CBLN2 (ENSPTRG00000010107) #15	NETO1 (ENSPTRG00000010108) #16	FBXO15 (ENSPTRG00000010109) #17	TIMM21 (ENSPTRG00000010110) #18	CYB5A (ENSPTRG00000010111) #19	ENSPTRG00000044095	C18H18orf63 (ENSPTRG00000029279) #20	ENSPTRG00000042747	DIPK1C (ENSPTRG00000010113) #21	CNDP2 (ENSPTRG00000010114) #22	CNDP1 (ENSPTRG00000010115) #23	ZNF407 (ENSPTRG00000010117) #24	PTGR3 (ENSPTRG00000048547) #25	TSHZ1 (ENSPTRG00000010120) #26	SMIM21 (ENSPTRG00000042672)	ZNF516 (ENSPTRG00000010121) #28	ZNF236 (ENSPTRG00000010123) #30	ENSPTRG00000043129 #29	MBP (ENSPTRG00000010124) #31	GALR1 (ENSPTRG00000010125) #32	SALL3 (ENSPTRG00000010126) #33	ATP9B (ENSPTRG00000010127) #34	NFATC1 (ENSPTRG00000010129)	CTDP1 (ENSPTRG00000010133)	KCNG2 (ENSPTRG00000010134)
Bonobo	MODERN SPECIES	9	TMX3 (ENSPPAG00000028688) #8	CCDC102B (ENSPPAG00000030026)	DOK6 (ENSPPAG00000030358) #10	CD226 (ENSPPAG00000030754) #11	RTTN (ENSPPAG00000033229) #13	SOCS6 (ENSPPAG00000032920) #14	ENSPPAG00000041821 #15	NETO1 (ENSPPAG00000025619) #16	FBXO15 (ENSPPAG00000008805) #17	TIMM21 (ENSPPAG00000013034) #18	CYB5A (ENSPPAG00000027983) #19	ENSPPAG00000031780	C18orf63 (ENSPPAG00000034652) #20	ENSPPAG00000032835	DIPK1C (ENSPPAG00000041469) #21	CNDP2 (ENSPPAG00000038993) #22	CNDP1 (ENSPPAG00000033478) #23	ENSPPAG00000039074 #24	ENSPPAG00000039880 #24	PTGR3 (ENSPPAG00000027237) #25	TSHZ1 (ENSPPAG00000029386) #26	ZNF516 (ENSPPAG00000032527) #28	ZNF236 (ENSPPAG00000038362) #30	ENSPPAG00000027666 #29	MBP (ENSPPAG00000029936) #31	GALR1 (ENSPPAG00000028798) #32	ENSPPAG00000029586 #33	ATP9B (ENSPPAG00000034175) #34	NFATC1 (ENSPPAG00000030766)	CTDP1 (ENSPPAG00000042068)	SLC66A2 (ENSPPAG00000031573)
Human	MODERN SPECIES	9	CDH19 (ENSG00000071991)	DSEL (ENSG00000171451) #7	TMX3 (ENSG00000166479) #8	CCDC102B (ENSG00000150636)	DOK6 (ENSG00000206052) #10	CD226 (ENSG00000150637) #11	RTTN (ENSG00000176225) #13	SOCS6 (ENSG00000170677) #14	CBLN2 (ENSG00000141668) #15	NETO1 (ENSG00000166342) #16	FBXO15 (ENSG00000141665) #17	TIMM21 (ENSG00000075336) #18	CYB5A (ENSG00000166347) #19	C18orf63 (ENSG00000206043) #20	DIPK1C (ENSG00000187773) #21	CNDP2 (ENSG00000133313) #22	CNDP1 (ENSG00000150656) #23	ZNF407 (ENSG00000215421) #24	PTGR3 (ENSG00000180011) #25	TSHZ1 (ENSG00000179981) #26	SMIM21 (ENSG00000206026)	ZNF516 (ENSG00000101493) #28	ZNF236 (ENSG00000130856) #30	MBP (ENSG00000197971) #31	GALR1 (ENSG00000166573) #32	SALL3 (ENSG00000256463) #33	ATP9B (ENSG00000166377) #34	NFATC1 (ENSG00000131196)	CTDP1 (ENSG00000060069)	KCNG2 (ENSG00000178342)	SLC66A2 (ENSG00000122490)
Gorilla	MODERN SPECIES	9	CDH19 (ENSGGOG00000024756)	DSEL (ENSGGOG00000040208) #7	TMX3 (ENSGGOG00000005485) #8	CCDC102B (ENSGGOG00000040790)	DOK6 (ENSGGOG00000003318) #10	CD226 (ENSGGOG00000006047) #11	RTTN (ENSGGOG00000013129) #13	SOCS6 (ENSGGOG00000023191) #14	CBLN2 (ENSGGOG00000009354) #15	ENSGGOG00000025925 #16	FBXO15 (ENSGGOG00000013486) #17	TIMM21 (ENSGGOG00000015941) #18	ENSGGOG00000007968 #19	C18orf63 (ENSGGOG00000014525) #20	DIPK1C (ENSGGOG00000016066) #21	CNDP2 (ENSGGOG00000016794) #22	CNDP1 (ENSGGOG00000016801) #23	ENSGGOG00000040979	ZNF407 (ENSGGOG00000025018) #24	PTGR3 (ENSGGOG00000007319) #25	TSHZ1 (ENSGGOG00000005289) #26	SMIM21 (ENSGGOG00000001499)	ZNF516 (ENSGGOG00000003996) #28	ZNF236 (ENSGGOG00000008826) #30	ENSGGOG00000036615 #29	MBP (ENSGGOG00000009590) #31	GALR1 (ENSGGOG00000001342) #32	SALL3 (ENSGGOG00000008127) #33	ATP9B (ENSGGOG00000008135) #34	NFATC1 (ENSGGOG00000006879)	CTDP1 (ENSGGOG00000011089)
Orangutan	MODERN SPECIES	9	DSEL (ENSPPYG00000009228) #7	TMX3 (ENSPPYG00000040113) #8	CCDC102B (ENSPPYG00000009230)	ENSPPYG00000001363	DOK6 (ENSPPYG00000009231) #10	CD226 (ENSPPYG00000009232) #11	RTTN (ENSPPYG00000009233) #13	SOCS6 (ENSPPYG00000009234) #14	CBLN2 (ENSPPYG00000032181) #15	NETO1 (ENSPPYG00000009237) #16	FBXO15 (ENSPPYG00000009238) #17	TIMM21 (ENSPPYG00000009239) #18	CYB5A (ENSPPYG00000009240) #19	C18orf63 (ENSPPYG00000009241) #20	DIPK1C (ENSPPYG00000009242) #21	CNDP2 (ENSPPYG00000009243) #22	CNDP1 (ENSPPYG00000009244) #23	ZNF407 (ENSPPYG00000009246) #24	PTGR3 (ENSPPYG00000009247) #25	TSHZ1 (ENSPPYG00000009248) #26	ENSPPYG00000037442 #27	ZNF516 (ENSPPYG00000009249) #28	ZNF236 (ENSPPYG00000009250) #30	MBP (ENSPPYG00000009251) #31	GALR1 (ENSPPYG00000009252) #32	SALL3 (ENSPPYG00000009253) #33	ATP9B (ENSPPYG00000009254) #34	NFATC1 (ENSPPYG00000009255)	CTDP1 (ENSPPYG00000009259)	KCNG2 (ENSPPYG00000009261)	SLC66A2 (ENSPPYG00000009262)
Gibbon	MODERN SPECIES	19	CCDC102B (ENSNLEG00000009091)	DOK6 (ENSNLEG00000009106) #10	CD226 (ENSNLEG00000009116) #11	RTTN (ENSNLEG00000009131) #13	SOCS6 (ENSNLEG00000018458) #14	ENSNLEG00000035138	ENSNLEG00000033807	CBLN2 (ENSNLEG00000009198) #15	NETO1 (ENSNLEG00000009204) #16	FBXO15 (ENSNLEG00000009214) #17	TIMM21 (ENSNLEG00000029495) #18	ENSNLEG00000029763	CYB5A (ENSNLEG00000009232) #19	C18orf63 (ENSNLEG00000009238) #20	DIPK1C (ENSNLEG00000009259) #21	CNDP2 (ENSNLEG00000009264) #22	CNDP1 (ENSNLEG00000009273) #23	ENSNLEG00000009303 #24	TSHZ1 (ENSNLEG00000018459) #26	ENSNLEG00000009315	ENSNLEG00000035372	ZNF516 (ENSNLEG00000009317) #28	ENSNLEG00000031632 #29	ZNF236 (ENSNLEG00000009319) #30	MBP (ENSNLEG00000009336) #31	GALR1 (ENSNLEG00000009350) #32	SALL3 (ENSNLEG00000008217) #33	ATP9B (ENSNLEG00000008230) #34	NFATC1 (ENSNLEG00000008307)	CTDP1 (ENSNLEG00000008353)	SLC66A2 (ENSNLEG00000008361)
Cercopithecidae	ANCESTRAL SPECIES	25	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847.a #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00910000146991	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00910000147812	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000166968	ENSGT00910000147830	ENSGT00940000166220 #27	ENSGT00940000160839 #28	ENSGT00390000006350.m.a.c.b.a.a.j.a	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33
Cercopithecinae	ANCESTRAL SPECIES	22	ENSGT00930000151022.d #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847.a #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770.n #19	ENSGT00910000146991	ENSGT00940000156770.m.a #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00910000147812	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000166968	ENSGT00910000147830	ENSGT00940000166220 #27	ENSGT00940000160839 #28	ENSGT00390000006350.m.a.c.b.a.a.j.a	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33
Cercopithecinae_a	ANCESTRAL SPECIES	21	ENSGT00930000151022.d #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847.a #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770.n #19	ENSGT00910000146991	ENSGT00940000156770.m.a #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00910000147812	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000166968	ENSGT00910000147830	ENSGT00940000166220 #27	ENSGT00940000160839 #28	ENSGT00390000006350.m.a.c.b.a.a.j.a	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33
Cercopithecinae_b	ANCESTRAL SPECIES	25	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847.a #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00910000146991	ENSGT00940000156770.m.a #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00910000147812	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000166220 #27	ENSGT00940000160839 #28	ENSGT00390000006350.m.a.c.b.a.a.j.a	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616
Cercopithecinae_d	ANCESTRAL SPECIES	142								ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00910000146991	ENSGT00940000156770.m.a #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00910000147812	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000166220 #27	ENSGT00940000160839 #28	ENSGT00390000006350.m.a.c.b.a.a.j.a	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616
Sooty mangabey	MODERN SPECIES	248								CBLN2 (ENSCATG00000036161) #15	NETO1 (ENSCATG00000034226) #16	FBXO15 (ENSCATG00000025306) #17	TIMM21 (ENSCATG00000035709) #18	ENSCATG00000033895 #19	ENSCATG00000037734	C18orf63 (ENSCATG00000008394) #20	DIPK1C (ENSCATG00000031119) #21	CNDP2 (ENSCATG00000030983) #22	CNDP1 (ENSCATG00000034582) #23	ENSCATG00000020154	ZNF407 (ENSCATG00000000049) #24	PTGR3 (ENSCATG00000032406) #25	TSHZ1 (ENSCATG00000038888) #26	ENSCATG00000042018 #27	ZNF516 (ENSCATG00000035185) #28	ENSCATG00000017534	ZNF236 (ENSCATG00000033072) #30	ENSCATG00000016933 #29	MBP (ENSCATG00000030245) #31	GALR1 (ENSCATG00000036322) #32	SALL3 (ENSCATG00000029727) #33	ATP9B (ENSCATG00000032665) #34	NFATC1 (ENSCATG00000029374)
Drill	MODERN SPECIES	545								CBLN2 (ENSMLEG00000029817) #15	NETO1 (ENSMLEG00000034707) #16	FBXO15 (ENSMLEG00000039973) #17	TIMM21 (ENSMLEG00000036871) #18	ENSMLEG00000033374	ENSMLEG00000038513 #19	C18orf63 (ENSMLEG00000032146) #20	DIPK1C (ENSMLEG00000038350) #21	CNDP2 (ENSMLEG00000013354) #22	CNDP1 (ENSMLEG00000000707) #23	ZNF407 (ENSMLEG00000037097) #24	TSHZ1 (ENSMLEG00000018472) #26	ENSMLEG00000034511 #27	ZNF516 (ENSMLEG00000027373) #28	ENSMLEG00000026133	ENSMLEG00000040506 #29	ZNF236 (ENSMLEG00000034779) #30	MBP (ENSMLEG00000041746) #31	ENSMLEG00000033952	ENSMLEG00000032518 #33	ATP9B (ENSMLEG00000020365) #34	ENSMLEG00000014274	NFATC1 (ENSMLEG00000037077)	CTDP1 (ENSMLEG00000035236)
Macaca	ANCESTRAL SPECIES	22	ENSGT00930000151022.d #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847.a #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770.n #19	ENSGT00910000146991	ENSGT00940000156770.m.a #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00910000147812	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000166220 #27	ENSGT00940000166968	ENSGT00910000147830	ENSGT00940000160839 #28	ENSGT00390000006350.m.a.c.b.a.a.j.a	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159286.b.b
Macaca_a	ANCESTRAL SPECIES	21	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847.a #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770.n #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.b.a.a.a.a.a.b.b.b	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00910000147171	ENSGT00960000192723	ENSGT00390000015641
Crab-eating macaque	MODERN SPECIES	9	DSEL (ENSMFAG00000036044) #7	TMX3 (ENSMFAG00000003421) #8	CCDC102B (ENSMFAG00000037114)	DOK6 (ENSMFAG00000037397) #10	CD226 (ENSMFAG00000042682) #11	RTTN (ENSMFAG00000043259) #13	SOCS6 (ENSMFAG00000036046) #14	CBLN2 (ENSMFAG00000033106) #15	NETO1 (ENSMFAG00000032084) #16	ENSMFAG00000052138	FBXO15 (ENSMFAG00000031818) #17	TIMM21 (ENSMFAG00000031508) #18	CYB5A (ENSMFAG00000030228) #19	C18orf63 (ENSMFAG00000029634) #20	ENSMFAG00000024091 #21	CNDP2 (ENSMFAG00000045912) #22	ENSMFAG00000055856	CNDP1 (ENSMFAG00000036771) #23	ENSMFAG00000057469	ZNF407 (ENSMFAG00000031607) #24	PTGR3 (ENSMFAG00000063377) #25	TSHZ1 (ENSMFAG00000037350) #26	ENSMFAG00000001214 #27	ENSMFAG00000063070	ENSMFAG00000055361	ZNF236 (ENSMFAG00000044643) #30	ENSMFAG00000057120	ENSMFAG00000059268	ENSMFAG00000056251	ENSMFAG00000041988 #31	GALR1 (ENSMFAG00000063435) #32
Rhesus	MODERN SPECIES	78																ENSMMUG00000053517 #22
Pig-tailed macaque	MODERN SPECIES	154									NETO1 (ENSMNEG00000028773) #16	FBXO15 (ENSMNEG00000044788) #17	TIMM21 (ENSMNEG00000038734) #18	ENSMNEG00000038498	ENSMNEG00000033556 #19	C18orf63 (ENSMNEG00000032579) #20	DIPK1C (ENSMNEG00000032975) #21	CNDP2 (ENSMNEG00000034380) #22	CNDP1 (ENSMNEG00000041332) #23	ENSMNEG00000018895	ZNF407 (ENSMNEG00000032620) #24	PTGR3 (ENSMNEG00000032613) #25	TSHZ1 (ENSMNEG00000031078) #26	SMIM21 (ENSMNEG00000034505)	ENSMNEG00000038263	ZNF516 (ENSMNEG00000003940) #28	ENSMNEG00000008498	ENSMNEG00000029102 #29	ZNF236 (ENSMNEG00000038296) #30	MBP (ENSMNEG00000008562) #31	ENSMNEG00000037566	SALL3 (ENSMNEG00000029916) #33	ATP9B (ENSMNEG00000028672) #34
Vervet Monkey	MODERN SPECIES	9	TMX3 (ENSCSAG00000018214) #8	ENSCSAG00000018215	CCDC102B (ENSCSAG00000018216)	ENSCSAG00000018217 #10	CD226 (ENSCSAG00000018218) #11	RTTN (ENSCSAG00000018219) #13	SOCS6 (ENSCSAG00000019505) #14	CBLN2 (ENSCSAG00000018220) #15	NETO1 (ENSCSAG00000018221) #16	ENSCSAG00000018222	FBXO15 (ENSCSAG00000018223) #17	TIMM21 (ENSCSAG00000018224) #18	CYB5A (ENSCSAG00000018225) #19	C18orf63 (ENSCSAG00000018226) #20	DIPK1C (ENSCSAG00000018228) #21	CNDP2 (ENSCSAG00000018229) #22	CNDP1 (ENSCSAG00000018230) #23	ZNF407 (ENSCSAG00000018231) #24	PTGR3 (ENSCSAG00000018232) #25	TSHZ1 (ENSCSAG00000019504) #26	ENSCSAG00000018233	SMIM21 (ENSCSAG00000018234)	ENSCSAG00000018235	ZNF516 (ENSCSAG00000018237) #28	ENSCSAG00000018238	ENSCSAG00000018239	ZNF236 (ENSCSAG00000018240) #30	MBP (ENSCSAG00000018242) #31	ENSCSAG00000018243	SALL3 (ENSCSAG00000018244) #33	ATP9B (ENSCSAG00000018245) #34
Rhinopithecus	ANCESTRAL SPECIES	251										ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00910000146991	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000166220 #27	ENSGT00940000160839 #28	ENSGT00390000006350.m.a.c.b.a.a.j.a.a	ENSGT00390000006350.m.a.c.b.a.a.j.a.b	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000157071.c #34	ENSGT00940000157616	ENSGT00910000147171
Golden snub-nosed monkey	MODERN SPECIES	3118									FBXO15 (ENSRROG00000031542) #17	TIMM21 (ENSRROG00000045064) #18	CYB5A (ENSRROG00000030982) #19	ENSRROG00000044278	C18orf63 (ENSRROG00000033253) #20	ENSRROG00000030908	DIPK1C (ENSRROG00000040593) #21	CNDP2 (ENSRROG00000027039) #22	CNDP1 (ENSRROG00000033891) #23	ZNF407 (ENSRROG00000041453) #24	PTGR3 (ENSRROG00000032513) #25	TSHZ1 (ENSRROG00000014497) #26	ENSRROG00000043270 #27
Black snub-nosed monkey	MODERN SPECIES	2868										FBXO15 (ENSRBIG00000038134) #17	TIMM21 (ENSRBIG00000042483) #18	CYB5A (ENSRBIG00000034037) #19	ENSRBIG00000044446	C18orf63 (ENSRBIG00000037011) #20	DIPK1C (ENSRBIG00000043465) #21	CNDP2 (ENSRBIG00000032288) #22	CNDP1 (ENSRBIG00000036078) #23	ZNF407 (ENSRBIG00000032368) #24	PTGR3 (ENSRBIG00000016720) #25	TSHZ1 (ENSRBIG00000037419) #26	ENSRBIG00000042967 #27	ZNF516 (ENSRBIG00000018664) #28	ENSRBIG00000042920	ENSRBIG00000029341	ENSRBIG00000006940	ZNF236 (ENSRBIG00000041864) #30	ENSRBIG00000031198 #29	MBP (ENSRBIG00000037108) #31	GALR1 (ENSRBIG00000027621) #32	SALL3 (ENSRBIG00000036190) #33	ATP9B (ENSRBIG00000037695) #34
Tarsier	MODERN SPECIES	7211											FBXO15 (ENSTSYG00000012653) #17	TIMM21 (ENSTSYG00000006823) #18	CYB5A (ENSTSYG00000002241) #19	CUNH18orf63 (ENSTSYG00000008810) #20	FAM69C (ENSTSYG00000029938) #21	CNDP2 (ENSTSYG00000010229) #22	CNDP1 (ENSTSYG00000009723) #23	ZNF407 (ENSTSYG00000036525) #24	TSHZ1 (ENSTSYG00000028132) #26
Strepsirrhini	ANCESTRAL SPECIES	22	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00940000163731	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847.a #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Lemuriformes	ANCESTRAL SPECIES	80	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847.a #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32
Lemuriformes_a	ANCESTRAL SPECIES	175			ENSGT00930000151022.c.b ##8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847.a #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32
Coquerels sifaka	MODERN SPECIES	420															DIPK1C (ENSPCOG00000019758) #21	CNDP2 (ENSPCOG00000010165) #22	CNDP1 (ENSPCOG00000013291) #23	ZNF407 (ENSPCOG00000014861) #24	PTGR3 (ENSPCOG00000017533) #25	TSHZ1 (ENSPCOG00000010742) #26	ZNF516 (ENSPCOG00000013722) #28	ZNF236 (ENSPCOG00000003371) #30	ENSPCOG00000026660 #29	MBP (ENSPCOG00000022672) #31	GALR1 (ENSPCOG00000015232) #32
Greater bamboo lemur	MODERN SPECIES	739									CBLN2 (ENSPSMG00000019694) #15	NETO1 (ENSPSMG00000019668) #16	FBXO15 (ENSPSMG00000019651) #17	TIMM21 (ENSPSMG00000019644) #18	ENSPSMG00000019619 #19	C18orf63 (ENSPSMG00000019568) #20	DIPK1C (ENSPSMG00000019555) #21	CNDP2 (ENSPSMG00000019521) #22	CNDP1 (ENSPSMG00000019431) #23	ENSPSMG00000019378	ENSPSMG00000019373	ZNF407 (ENSPSMG00000019365) #24	PTGR3 (ENSPSMG00000019354) #25	TSHZ1 (ENSPSMG00000019351) #26	ZNF516 (ENSPSMG00000019344) #28	ZNF236 (ENSPSMG00000019328) #30	ENSPSMG00000019282	MBP (ENSPSMG00000019199) #31	GALR1 (ENSPSMG00000019143) #32
Mouse lemur	MODERN SPECIES	10	HSBP1L1 (ENSMICG00000028958)	ENSMICG00000031799	ENSMICG00000032888	RBFA (ENSMICG00000011956)	ADNP2 (ENSMICG00000036153)	PARD6G (ENSMICG00000011267)	MBP (ENSMICG00000004041) #31	ENSMICG00000026747 #29	ZNF236 (ENSMICG00000004031) #30	ZNF516 (ENSMICG00000000044) #28	TSHZ1 (ENSMICG00000013601) #26	PTGR3 (ENSMICG00000047342) #25	ZNF407 (ENSMICG00000034092) #24	CNDP1 (ENSMICG00000015694) #23	DIPK1C (ENSMICG00000027176) #21	CNDP2 (ENSMICG00000012839) #22	C18orf63 (ENSMICG00000041724) #20	CYB5A (ENSMICG00000003395) #19	TIMM21 (ENSMICG00000027988) #18	FBXO15 (ENSMICG00000035240) #17	NETO1 (ENSMICG00000007872) #16	CBLN2 (ENSMICG00000030925) #15	SOCS6 (ENSMICG00000017585) #14	RTTN (ENSMICG00000014111) #13	CD226 (ENSMICG00000029965) #11	ENSMICG00000027742	DOK6 (ENSMICG00000027937) #10	ENSMICG00000037491 #9	CDH19 (ENSMICG00000030062)	CDH7 (ENSMICG00000031244)	ENSMICG00000005211
Bushbaby	MODERN SPECIES	142	CDH19 (ENSOGAG00000000853)	DSEL (ENSOGAG00000034834) #7	TMX3 (ENSOGAG00000009490) #8	CCDC102B (ENSOGAG00000000472)	ENSOGAG00000029434	DOK6 (ENSOGAG00000011292) #10	RTTN (ENSOGAG00000015011) #13	SOCS6 (ENSOGAG00000034731) #14	CBLN2 (ENSOGAG00000026560) #15	NETO1 (ENSOGAG00000009869) #16	FBXO15 (ENSOGAG00000011591) #17	TIMM21 (ENSOGAG00000011596) #18	CYB5A (ENSOGAG00000000052) #19	C18orf63 (ENSOGAG00000000053) #20	DIPK1C (ENSOGAG00000025227) #21	CNDP2 (ENSOGAG00000013471) #22	CNDP1 (ENSOGAG00000013478) #23	ZNF407 (ENSOGAG00000032013) #24	PTGR3 (ENSOGAG00000007345) #25	TSHZ1 (ENSOGAG00000007341) #26	ZNF516 (ENSOGAG00000033116) #28	ZNF236 (ENSOGAG00000027487) #30	MBP (ENSOGAG00000026007) #31	ENSOGAG00000012140	SALL3 (ENSOGAG00000031681) #33	ATP9B (ENSOGAG00000008156) #34	NFATC1 (ENSOGAG00000008159)	ENSOGAG00000027882	CTDP1 (ENSOGAG00000026225)	ENSOGAG00000032618	KCNG2 (ENSOGAG00000033887)
Euarchontoglires_A	ANCESTRAL SPECIES	22	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Tree shrew	MODERN SPECIES	1498																CNDP2 (ENSTBEG00000011235) #22	ENSTBEG00000011263 #23
Glires	ANCESTRAL SPECIES	23	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Rodentia	ANCESTRAL SPECIES	23	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT01030000234871 #29	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Rodentia_A	ANCESTRAL SPECIES	23	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00550000076117
Sciuridae	ANCESTRAL SPECIES	31	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00550000076117
Marmotini	ANCESTRAL SPECIES	31	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00550000076117
Marmotini_b	ANCESTRAL SPECIES	147			ENSGT00930000151022.d #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00550000076117
Arctic ground squirrel	MODERN SPECIES	61			TMX3 (ENSUPAG00010015249) #8	ENSUPAG00010015287 #9	DOK6 (ENSUPAG00010015325) #10	ENSUPAG00010015339 #11	RTTN (ENSUPAG00010015348) #13	SOCS6 (ENSUPAG00010015376) #14	CBLN2 (ENSUPAG00010015415) #15	NETO1 (ENSUPAG00010015441) #16	FBXO15 (ENSUPAG00010015463) #17	TIMM21 (ENSUPAG00010015488) #18	CYB5A (ENSUPAG00010015513) #19	C18orf63 (ENSUPAG00010015537) #20	DIPK1C (ENSUPAG00010015556) #21	CNDP2 (ENSUPAG00010015570) #22	CNDP1 (ENSUPAG00010015588) #23	ZNF407 (ENSUPAG00010015601) #24	PTGR3 (ENSUPAG00010015615) #25	TSHZ1 (ENSUPAG00010015631) #26	ZNF516 (ENSUPAG00010015641) #28
Squirrel	MODERN SPECIES	216												FBXO15 (ENSSTOG00000014142) #17	TIMM21 (ENSSTOG00000023611) #18	ENSSTOG00000022436 #19	DIPK1C (ENSSTOG00000024256) #21	CNDP2 (ENSSTOG00000002221) #22	ZNF407 (ENSSTOG00000029099) #24	PTGR3 (ENSSTOG00000024479) #25	TSHZ1 (ENSSTOG00000019384) #26	ZNF516 (ENSSTOG00000026569) #28	ZNF236 (ENSSTOG00000006987) #30	MBP (ENSSTOG00000007051) #31	GALR1 (ENSSTOG00000007064) #32	SALL3 (ENSSTOG00000004145) #33	ATP9B (ENSSTOG00000006826) #34	NFATC1 (ENSSTOG00000008168)	CTDP1 (ENSSTOG00000011752)	KCNG2 (ENSSTOG00000027489)	SLC66A2 (ENSSTOG00000024050)	HSBP1L1 (ENSSTOG00000029821)	TXNL4A (ENSSTOG00000022277)
Alpin marmot	MODERN SPECIES	62	CDH19 (ENSMMMG00000018404)	DSEL (ENSMMMG00000018420) #7	TMX3 (ENSMMMG00000018431) #8	ENSMMMG00000018461 #9	DOK6 (ENSMMMG00000018509) #10	ENSMMMG00000018526 #11	RTTN (ENSMMMG00000018533) #13	SOCS6 (ENSMMMG00000018573) #14	CBLN2 (ENSMMMG00000018641) #15	NETO1 (ENSMMMG00000018657) #16	FBXO15 (ENSMMMG00000018675) #17	TIMM21 (ENSMMMG00000018686) #18	CYB5A (ENSMMMG00000018693) #19	C18orf63 (ENSMMMG00000018708) #20	DIPK1C (ENSMMMG00000018726) #21	CNDP2 (ENSMMMG00000018737) #22	CNDP1 (ENSMMMG00000018749) #23	ZNF407 (ENSMMMG00000018778) #24	PTGR3 (ENSMMMG00000018782) #25	TSHZ1 (ENSMMMG00000018783) #26	ZNF516 (ENSMMMG00000018790) #28	ZNF236 (ENSMMMG00000018847) #30	MBP (ENSMMMG00000018899) #31	GALR1 (ENSMMMG00000018971) #32	SALL3 (ENSMMMG00000018978) #33	ATP9B (ENSMMMG00000018994) #34	NFATC1 (ENSMMMG00000019049)	ENSMMMG00000019069	CTDP1 (ENSMMMG00000019077)	KCNG2 (ENSMMMG00000019094)	SLC66A2 (ENSMMMG00000019097)
Eurasian red squirrel	MODERN SPECIES	4	CDH19 (ENSSVLG00005007898)	DSEL (ENSSVLG00005008021) #7	TMX3 (ENSSVLG00005008051) #8	CCDC102B (ENSSVLG00005008117)	DOK6 (ENSSVLG00005008178) #10	CD226 (ENSSVLG00005008245) #11	RTTN (ENSSVLG00005008360) #13	SOCS6 (ENSSVLG00005008849) #14	CBLN2 (ENSSVLG00005008889) #15	NETO1 (ENSSVLG00005008955) #16	FBXO15 (ENSSVLG00005009033) #17	TIMM21 (ENSSVLG00005009130) #18	CYB5A (ENSSVLG00005009233) #19	C18orf63 (ENSSVLG00005009351) #20	DIPK1C (ENSSVLG00005009432) #21	CNDP2 (ENSSVLG00005009505) #22	CNDP1 (ENSSVLG00005009579) #23	ZNF407 (ENSSVLG00005009770) #24	PTGR3 (ENSSVLG00005009844) #25	TSHZ1 (ENSSVLG00005009882) #26	ZNF516 (ENSSVLG00005009908) #28	ZNF236 (ENSSVLG00005009991) #30	MBP (ENSSVLG00005010263) #31	GALR1 (ENSSVLG00005010721) #32	SALL3 (ENSSVLG00005010810) #33	ATP9B (ENSSVLG00005010928) #34	ENSSVLG00005011078	NFATC1 (ENSSVLG00005011217)	ENSSVLG00005012377	CTDP1 (ENSSVLG00005012457)	KCNG2 (ENSSVLG00005012552)
Hystricomorpha	ANCESTRAL SPECIES	32	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00550000076117
Hystricomorpha_a	ANCESTRAL SPECIES	26	ENSGT00940000157031	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00550000076117
Hystricomorpha_b	ANCESTRAL SPECIES	21	ENSGT00940000157031	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00550000076117
Degu	MODERN SPECIES	161									ENSODEG00000002681	FBXO15 (ENSODEG00000002700) #17	TIMM21 (ENSODEG00000002726) #18	ENSODEG00000002747 #19	ENSODEG00000018841	ENSODEG00000002757	DIPK1C (ENSODEG00000002789) #21	CNDP2 (ENSODEG00000002825) #22	CNDP1 (ENSODEG00000002852) #23	ENSODEG00000002905 #24	ENSODEG00000018901	ENSODEG00000002919 #24	PTGR3 (ENSODEG00000002932) #25	ENSODEG00000002943 #26	ENSODEG00000002953	ZNF516 (ENSODEG00000002971) #28	ZNF236 (ENSODEG00000003041) #30	MBP (ENSODEG00000002651) #31	GALR1 (ENSODEG00000002674) #32	SALL3 (ENSODEG00000002692) #33	ATP9B (ENSODEG00000002792) #34	NFATC1 (ENSODEG00000002866)	ENSODEG00000002960
Long-tailed chinchilla	MODERN SPECIES	109	TMX3 (ENSCLAG00000008593) #8	DOK6 (ENSCLAG00000010707) #10	CD226 (ENSCLAG00000009214) #11	ENSCLAG00000011300	RTTN (ENSCLAG00000008660) #13	SOCS6 (ENSCLAG00000012662) #14	ENSCLAG00000013595	ENSCLAG00000007863	CBLN2 (ENSCLAG00000007487) #15	NETO1 (ENSCLAG00000009727) #16	FBXO15 (ENSCLAG00000010080) #17	TIMM21 (ENSCLAG00000010578) #18	CYB5A (ENSCLAG00000009123) #19	C18orf63 (ENSCLAG00000008797) #20	DIPK1C (ENSCLAG00000014214) #21	CNDP2 (ENSCLAG00000013139) #22	CNDP1 (ENSCLAG00000008101) #23	ENSCLAG00000011969 #24	PTGR3 (ENSCLAG00000016929) #25	TSHZ1 (ENSCLAG00000018002) #26	ZNF516 (ENSCLAG00000015957) #28	ZNF236 (ENSCLAG00000007793) #30	MBP (ENSCLAG00000014151) #31	GALR1 (ENSCLAG00000013020) #32	SALL3 (ENSCLAG00000007727) #33	ATP9B (ENSCLAG00000010218) #34	NFATC1 (ENSCLAG00000009557)	ENSCLAG00000013642	CTDP1 (ENSCLAG00000011662)	KCNG2 (ENSCLAG00000007825)	SLC66A2 (ENSCLAG00000008800)
Guinea pig	MODERN SPECIES	57		CDH7 (ENSCPOG00000001747)	CDH19 (ENSCPOG00000000563)	DSEL (ENSCPOG00000009231) #7	TMX3 (ENSCPOG00000010485) #8	DOK6 (ENSCPOG00000003225) #10	CD226 (ENSCPOG00000039994) #11	RTTN (ENSCPOG00000002661) #13	SOCS6 (ENSCPOG00000039204) #14	CBLN2 (ENSCPOG00000002004) #15	NETO1 (ENSCPOG00000009520) #16	FBXO15 (ENSCPOG00000006644) #17	TIMM21 (ENSCPOG00000011226) #18	CYB5A (ENSCPOG00000012111) #19	ENSCPOG00000002230 #21	CNDP2 (ENSCPOG00000004578) #22	CNDP1 (ENSCPOG00000038292) #23	ENSCPOG00000026737 #24	PTGR3 (ENSCPOG00000024070) #25	TSHZ1 (ENSCPOG00000009072) #26
Naked mole-rat female	MODERN SPECIES	9	ENSHGLG00000047507	ENSHGLG00000000688	ENSHGLG00000045137	ENSHGLG00000040150	ENSHGLG00000001957 #15	ENSHGLG00000000784 #16	ENSHGLG00000002100	FBXO15 (ENSHGLG00000001715) #17	ENSHGLG00000004807 #18	CYB5A (ENSHGLG00000036219) #19	C18orf63 (ENSHGLG00000041217) #20	ENSHGLG00000032625	DIPK1C (ENSHGLG00000032925) #21	ENSHGLG00000035284	ENSHGLG00000036803	CNDP2 (ENSHGLG00000000420) #22	CNDP1 (ENSHGLG00000000854) #23	ENSHGLG00000029663	ENSHGLG00000000471 #24	ENSHGLG00000002361	ENSHGLG00000048880	ENSHGLG00000002000	ENSHGLG00000046614 #25	TSHZ1 (ENSHGLG00000001424) #26	ENSHGLG00000041384	ENSHGLG00000045035	ENSHGLG00000034199	ENSHGLG00000041344 #30	ENSHGLG00000000648 #30	ENSHGLG00000039076 #31	ENSHGLG00000045815 #31
Rodentia_B	ANCESTRAL SPECIES	27	ENSGT00940000157031	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT01030000234871 #29	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Myomorpha	ANCESTRAL SPECIES	35	ENSGT00940000157031	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022.d #8	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT01030000234871 #29	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Muroidea	ANCESTRAL SPECIES	73				ENSGT00930000151022.d #8	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT01030000234871 #29	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Muroidea_A	ANCESTRAL SPECIES	18				ENSGT00930000151022.d #8	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT01030000234871 #29	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Cricetidae	ANCESTRAL SPECIES	18				ENSGT00930000151022.d #8	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770.t #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00900000143828	ENSGT00940000160839 #28	ENSGT01030000234871 #29	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858
Cricetidae_B	ANCESTRAL SPECIES	15				ENSGT00930000151022.d #8	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770.t #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00900000143828	ENSGT00940000160839 #28	ENSGT01030000234871 #29	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858
Northern American deer mouse	MODERN SPECIES	10	Rttn (ENSPEMG00000019864) #13	ENSPEMG00000027089	Socs6 (ENSPEMG00000009086) #14	ENSPEMG00000009228	ENSPEMG00000004621	ENSPEMG00000028176	Cbln2 (ENSPEMG00000024653) #15	Neto1 (ENSPEMG00000021247) #16	ENSPEMG00000026675	ENSPEMG00000030444	Fbxo15 (ENSPEMG00000003160) #17	Timm21 (ENSPEMG00000024475) #18	Cyb5a (ENSPEMG00000020270) #19	Gm17266 (ENSPEMG00000031219) #20	Dipk1c (ENSPEMG00000019790) #21	Cndp2 (ENSPEMG00000020038) #22	Cndp1 (ENSPEMG00000017304) #23	Zfp407 (ENSPEMG00000019754) #24	Zadh2 (ENSPEMG00000028418) #25	Tshz1 (ENSPEMG00000022838) #26	Zfp516 (ENSPEMG00000024000) #28	ENSPEMG00000024427 #29	Zfp236 (ENSPEMG00000026320) #30	Mbp (ENSPEMG00000021451) #31	Galr1 (ENSPEMG00000022914) #32	Sall3 (ENSPEMG00000022799) #33	ENSPEMG00000005583	Atp9b (ENSPEMG00000023034) #34	Nfatc1 (ENSPEMG00000022364)	Ctdp1 (ENSPEMG00000022491)	Kcng2 (ENSPEMG00000026971)
Prairie vole	MODERN SPECIES	5								ENSMOCG00000002373	Cbln2 (ENSMOCG00000018040) #15	Neto1 (ENSMOCG00000021043) #16	ENSMOCG00000021362	Fbxo15 (ENSMOCG00000017161) #17	Timm21 (ENSMOCG00000008519) #18	Cyb5a (ENSMOCG00000023024) #19	Dipk1c (ENSMOCG00000022218) #21	Cndp2 (ENSMOCG00000008291) #22	Cndp1 (ENSMOCG00000017520) #23	Zfp407 (ENSMOCG00000015024) #24	Zadh2 (ENSMOCG00000009189) #25	Tshz1 (ENSMOCG00000001476) #26	ENSMOCG00000016186	Zfp516 (ENSMOCG00000021872) #28	Zfp236 (ENSMOCG00000022870) #30	Mbp (ENSMOCG00000013318) #31	Galr1 (ENSMOCG00000018111) #32	Sall3 (ENSMOCG00000013205) #33	Atp9b (ENSMOCG00000015627) #34	Nfatc1 (ENSMOCG00000017415)	Ctdp1 (ENSMOCG00000017315)	Kcng2 (ENSMOCG00000011974)	Slc66a2 (ENSMOCG00000005974)
Cricetinae	ANCESTRAL SPECIES	14	ENSGT00940000156781	ENSGT00950000182902.a.c	ENSGT00510000047245.n	ENSGT00940000157762	ENSGT00390000008041.B	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770.t #19	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00900000143828	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Chinese hamster chok1gshd	MODERN SPECIES	92	Dok6 (ENSCGRG00001001960) #10	Cd226 (ENSCGRG00001017903) #11	ENSCGRG00001009493	Rttn (ENSCGRG00001022256) #13	Socs6 (ENSCGRG00001006036) #14	ENSCGRG00001002314	Cbln2 (ENSCGRG00001018380) #15	ENSCGRG00001018048	Neto1 (ENSCGRG00001009379) #16	ENSCGRG00001024329	Fbxo15 (ENSCGRG00001000344) #17	Timm21 (ENSCGRG00001023966) #18	Cyb5a (ENSCGRG00001020903) #19	ENSCGRG00001014845	Dipk1c (ENSCGRG00001011086) #21	Cndp2 (ENSCGRG00001022839) #22	Cndp1 (ENSCGRG00001017779) #23	Zfp407 (ENSCGRG00001024334) #24	Zadh2 (ENSCGRG00001023041) #25	Tshz1 (ENSCGRG00001020488) #26	ENSCGRG00001014546	Zfp516 (ENSCGRG00001014360) #28	Zfp236 (ENSCGRG00001012398) #30	Mbp (ENSCGRG00001015943) #31	Galr1 (ENSCGRG00001023113) #32	Sall3 (ENSCGRG00001018203) #33	Atp9b (ENSCGRG00001016871) #34	Nfatc1 (ENSCGRG00001007565)	ENSCGRG00001000659	Ctdp1 (ENSCGRG00001020255)	Kcng2 (ENSCGRG00001009283)
Golden Hamster	MODERN SPECIES	619	Mib1 (ENSMAUG00000013504)	Abhd3 (ENSMAUG00000015600)	ENSMAUG00000006829	Esco1 (ENSMAUG00000018771)	Greb1l (ENSMAUG00000013565)	Dok6 (ENSMAUG00000001321) #10	Cd226 (ENSMAUG00000002713) #11	Rttn (ENSMAUG00000022019) #13	ENSMAUG00000022132	Cbln2 (ENSMAUG00000011105) #15	Neto1 (ENSMAUG00000021232) #16	ENSMAUG00000021871 #17	Timm21 (ENSMAUG00000020549) #18	ENSMAUG00000009196 #19	Dipk1c (ENSMAUG00000019914) #21	Cndp2 (ENSMAUG00000021830) #22	Cndp1 (ENSMAUG00000022223) #23	Zfp407 (ENSMAUG00000006171) #24	ENSMAUG00000010942 #25	Tshz1 (ENSMAUG00000022081) #26	Zfp516 (ENSMAUG00000008561) #28	ENSMAUG00000002017 #30	ENSMAUG00000015835 #30	ENSMAUG00000000901 #31	Galr1 (ENSMAUG00000009153) #32	Sall3 (ENSMAUG00000011828) #33	ENSMAUG00000015980 #34	Nfatc1 (ENSMAUG00000013597)	Ctdp1 (ENSMAUG00000015399)	Slc66a2 (ENSMAUG00000019704)	Hsbp1l1 (ENSMAUG00000007227)
Murinae	ANCESTRAL SPECIES	17			ENSGT00940000153805.q.b.a.a.a.b.b.b.a.b.b.a	ENSGT00930000151022.d #8	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00550000076117
Mus	ANCESTRAL SPECIES	19			ENSGT00940000153805.q.b.a.a.a.b.b.b.a.b.b.a	ENSGT00930000151022.d #8	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00550000076117
Mus_A	DUPLICATION
Mus_A	ANCESTRAL SPECIES	19			ENSGT00940000153805.q.b.a.a.a.b.b.b.a.b.b.a	ENSGT00930000151022.d #8	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500.c #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00550000076117
Mus_B	ANCESTRAL SPECIES	19			ENSGT00940000153805.q.b.a.a.a.b.b.b.a.b.b.a	ENSGT00930000151022.d #8	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500.c #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00550000076117
Mus_C	ANCESTRAL SPECIES	16		ENSGT00940000153805.q.b.a.a.a.b.b.b.a.b.b.a	ENSGT00930000151022.d #8	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00390000003122.c.a.b	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500.c #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00550000076117
spretus	MODERN SPECIES	9			Gm45871 (MGP_SPRETEiJ_G0023379)	Tmx3 (MGP_SPRETEiJ_G0023378) #8	Dok6 (MGP_SPRETEiJ_G0023377) #10	Cd226 (MGP_SPRETEiJ_G0023376) #11	Rttn (MGP_SPRETEiJ_G0023375) #13	MGP_SPRETEiJ_G0023374 #14	MGP_SPRETEiJ_G0023373	Cbln2 (MGP_SPRETEiJ_G0023372) #15	Neto1 (MGP_SPRETEiJ_G0023371) #16	Timm21 (MGP_SPRETEiJ_G0023370) #18	Fbxo15 (MGP_SPRETEiJ_G0023369) #17	Cyb5a (MGP_SPRETEiJ_G0023368) #19	MGP_SPRETEiJ_G0023367 #21	Cndp2 (MGP_SPRETEiJ_G0023366) #22	Cndp1 (MGP_SPRETEiJ_G0023365) #23	Zfp407 (MGP_SPRETEiJ_G0023364) #24	Zadh2 (MGP_SPRETEiJ_G0023363) #25	Tshz1 (MGP_SPRETEiJ_G0023362) #26	Zfp516 (MGP_SPRETEiJ_G0023361) #28	Zfp236 (MGP_SPRETEiJ_G0023360) #30	Mbp (MGP_SPRETEiJ_G0023359) #31	Galr1 (MGP_SPRETEiJ_G0023358) #32	Sall3 (MGP_SPRETEiJ_G0023357) #33	Atp9b (MGP_SPRETEiJ_G0023356) #34	Nfatc1 (MGP_SPRETEiJ_G0023355)	Ctdp1 (MGP_SPRETEiJ_G0023354)	Kcng2 (MGP_SPRETEiJ_G0023353)	Slc66a2 (MGP_SPRETEiJ_G0023352)	Hsbp1l1 (MGP_SPRETEiJ_G0023351)
Steppe mouse	MODERN SPECIES	3168					Cbln2 (ENSMSIG00000024262) #15	Neto1 (ENSMSIG00000024230) #16	ENSMSIG00000024214	ENSMSIG00000024189	ENSMSIG00000024186	ENSMSIG00000024175	Timm21 (ENSMSIG00000024148) #18	Fbxo15 (ENSMSIG00000024100) #17	Cyb5a (ENSMSIG00000024084) #19	Gm17266 (ENSMSIG00000024036) #20	ENSMSIG00000024020 #21	Cndp2 (ENSMSIG00000023966) #22
Mouse	MODERN SPECIES	9		Gm45871 (ENSMUSG00000110277)	Tmx3 (ENSMUSG00000024614) #8	Dok6 (ENSMUSG00000073514) #10	Cd226 (ENSMUSG00000034028) #11	Rttn (ENSMUSG00000023066) #13	Socs6 (ENSMUSG00000056153) #14	Bhmt1b (ENSMUSG00000069324)	Cbln2 (ENSMUSG00000024647) #15	Neto1 (ENSMUSG00000050321) #16	Timm21 (ENSMUSG00000024645) #18	Fbxo15 (ENSMUSG00000034391) #17	Cyb5a (ENSMUSG00000024646) #19	Gm17266 (ENSMUSG00000117781) #20	Dipk1c (ENSMUSG00000047992) #21	Cndp2 (ENSMUSG00000024644) #22	Cndp1 (ENSMUSG00000056162) #23	Zfp407 (ENSMUSG00000048410) #24	Zadh2 (ENSMUSG00000049090) #25	Tshz1 (ENSMUSG00000046982) #26	Zfp516 (ENSMUSG00000058881) #28	Zfp236 (ENSMUSG00000041258) #30	Mbp (ENSMUSG00000041607) #31	Galr1 (ENSMUSG00000024553) #32	Sall3 (ENSMUSG00000024565) #33	Atp9b (ENSMUSG00000024566) #34	Nfatc1 (ENSMUSG00000033016)	Ctdp1 (ENSMUSG00000033323)	Kcng2 (ENSMUSG00000059852)	Slc66a2 (ENSMUSG00000034006)	Hsbp1l1 (ENSMUSG00000078963)
Ryukyu mouse	MODERN SPECIES	9					Tmx3 (MGP_CAROLIEiJ_G0022462) #8	Dok6 (MGP_CAROLIEiJ_G0022461) #10	Cd226 (MGP_CAROLIEiJ_G0022460) #11	Rttn (MGP_CAROLIEiJ_G0022459) #13	MGP_CAROLIEiJ_G0022458 #14	Cbln2 (MGP_CAROLIEiJ_G0022457) #15	Neto1 (MGP_CAROLIEiJ_G0022456) #16	MGP_CAROLIEiJ_G0022455 #17	Timm21 (MGP_CAROLIEiJ_G0022454) #18	Cyb5a (MGP_CAROLIEiJ_G0022453) #19	MGP_CAROLIEiJ_G0022452 #21	Cndp2 (MGP_CAROLIEiJ_G0022451) #22	Cndp1 (MGP_CAROLIEiJ_G0022450) #23	Zfp407 (MGP_CAROLIEiJ_G0022449) #24	Zadh2 (MGP_CAROLIEiJ_G0022448) #25	Tshz1 (MGP_CAROLIEiJ_G0022447) #26	Zfp516 (MGP_CAROLIEiJ_G0022446) #28	Zfp236 (MGP_CAROLIEiJ_G0022445) #30	Mbp (MGP_CAROLIEiJ_G0022444) #31	Galr1 (MGP_CAROLIEiJ_G0022443) #32	Sall3 (MGP_CAROLIEiJ_G0022442) #33	Atp9b (MGP_CAROLIEiJ_G0022441) #34	Nfatc1 (MGP_CAROLIEiJ_G0022440)	Ctdp1 (MGP_CAROLIEiJ_G0022439)	Kcng2 (MGP_CAROLIEiJ_G0022438)	Slc66a2 (MGP_CAROLIEiJ_G0022437)	Hsbp1l1 (MGP_CAROLIEiJ_G0022436)
Mus_A	ANCESTRAL SPECIES																	ENSGT00940000156500.d #22
Mus_B	ANCESTRAL SPECIES																	ENSGT00940000156500.d #22
Mus_C	ANCESTRAL SPECIES																	ENSGT00940000156500.d #22
Steppe mouse	MODERN SPECIES	16																ENSMSIG00000013766 #22	ENSMSIG00000013739	Inhba (ENSMSIG00000013725)	Gli3 (ENSMSIG00000013680)	AW209491 (ENSMSIG00000013663)	Psma2 (ENSMSIG00000013613)	Mrpl32 (ENSMSIG00000013590)
Shrew mouse	MODERN SPECIES	6					Tmx3 (MGP_PahariEiJ_G0019190) #8	Dok6 (MGP_PahariEiJ_G0019189) #10	Cd226 (MGP_PahariEiJ_G0019188) #11	Rttn (MGP_PahariEiJ_G0019187) #13	Socs6 (MGP_PahariEiJ_G0019186) #14	Cbln2 (MGP_PahariEiJ_G0019185) #15	Neto1 (MGP_PahariEiJ_G0019184) #16	Timm21 (MGP_PahariEiJ_G0019183) #18	MGP_PahariEiJ_G0019182 #17	Cyb5a (MGP_PahariEiJ_G0019181) #19	MGP_PahariEiJ_G0019180 #21	Cndp2 (MGP_PahariEiJ_G0019179) #22	Cndp1 (MGP_PahariEiJ_G0019178) #23	Zfp407 (MGP_PahariEiJ_G0019177) #24	Zadh2 (MGP_PahariEiJ_G0019176) #25	Tshz1 (MGP_PahariEiJ_G0019175) #26	Zfp516 (MGP_PahariEiJ_G0019174) #28	Zfp236 (MGP_PahariEiJ_G0019173) #30	Mbp (MGP_PahariEiJ_G0019172) #31	Galr1 (MGP_PahariEiJ_G0019171) #32	Sall3 (MGP_PahariEiJ_G0019170) #33	Atp9b (MGP_PahariEiJ_G0019169) #34	Nfatc1 (MGP_PahariEiJ_G0019168)	Ctdp1 (MGP_PahariEiJ_G0019167)	Kcng2 (MGP_PahariEiJ_G0019166)	Slc66a2 (MGP_PahariEiJ_G0019165)	Hsbp1l1 (MGP_PahariEiJ_G0019164)
Rat	MODERN SPECIES	9	Rttn (ENSRNOG00000038200) #13	AABR07032856.1 (ENSRNOG00000038211)	ENSRNOG00000067774	Socs6 (ENSRNOG00000038212) #14	ENSRNOG00000064792	RGD1560813 (ENSRNOG00000013622)	RGD1559726 (ENSRNOG00000034073)	Cbln2 (ENSRNOG00000013654) #15	Neto1 (ENSRNOG00000014006) #16	ENSRNOG00000067088	Fbxo15 (ENSRNOG00000038225) #17	Timm21 (ENSRNOG00000015142) #18	Cyb5a (ENSRNOG00000070068) #19	LOC100359752 (ENSRNOG00000038241) #20	Dipk1c (ENSRNOG00000015448) #21	Cndp2 (ENSRNOG00000015591) #22	Cndp1 (ENSRNOG00000027739) #23	Zfp407 (ENSRNOG00000043357) #24	Ptgr3 (ENSRNOG00000016239) #25	Tshz1 (ENSRNOG00000016246) #26	Zfp516 (ENSRNOG00000016258) #28	Zfp236 (ENSRNOG00000016303) #30	Mbp (ENSRNOG00000016516) #31	Galr1 (ENSRNOG00000016654) #32	Sall3 (ENSRNOG00000026116) #33	Atp9b (ENSRNOG00000032039) #34	Nfatc1 (ENSRNOG00000017146)	Ctdp1 (ENSRNOG00000061474)	Kcng2 (ENSRNOG00000053640)	Slc66a2 (ENSRNOG00000059215)	Hsbp1l1 (ENSRNOG00000059055)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1543										Cbln2 (ENSNGAG00000021579) #15	Neto1 (ENSNGAG00000014840) #16	Fbxo15 (ENSNGAG00000018318) #17	Timm21 (ENSNGAG00000022926) #18	Cyb5a (ENSNGAG00000001698) #19	Dipk1c (ENSNGAG00000014549) #21	Cndp2 (ENSNGAG00000022339) #22	Cndp1 (ENSNGAG00000010812) #23	Zfp407 (ENSNGAG00000012229) #24	ENSNGAG00000022733 #25	Tshz1 (ENSNGAG00000021600) #26	Zfp516 (ENSNGAG00000012539) #28	Zfp236 (ENSNGAG00000011056) #30	ENSNGAG00000024328 #31	ENSNGAG00000023281	ENSNGAG00000005493	Galr1 (ENSNGAG00000023931) #32	Sall3 (ENSNGAG00000023772) #33	Atp9b (ENSNGAG00000021053) #34	Nfatc1 (ENSNGAG00000023514)	Ctdp1 (ENSNGAG00000003968)	Kcng2 (ENSNGAG00000024057)
Lesser Egyptian jerboa	MODERN SPECIES	55	Serpinb7 (ENSJJAG00000019416)	Serpinb2 (ENSJJAG00000008877)	Serpinb10 (ENSJJAG00000012267)	Serpinb8 (ENSJJAG00000024051)	Cdh7 (ENSJJAG00000019518)	ENSJJAG00000018700	Dsel (ENSJJAG00000013330) #7	ENSJJAG00000011145 #8	Dok6 (ENSJJAG00000017009) #10	ENSJJAG00000023825 #11	ENSJJAG00000016953 #13	Socs6 (ENSJJAG00000017873) #14	Cbln2 (ENSJJAG00000021520) #15	Neto1 (ENSJJAG00000024284) #16	Cyb5a (ENSJJAG00000020003) #19	Cndp2 (ENSJJAG00000013882) #22	Cndp1 (ENSJJAG00000022953) #23	Zadh2 (ENSJJAG00000013604) #25	ENSJJAG00000017663 #26	Zfp516 (ENSJJAG00000016237) #28	Ndc80 (ENSJJAG00000020131)	Adcyap1 (ENSJJAG00000024315)	Yes1 (ENSJJAG00000006110)	ENSJJAG00000019240	Tyms (ENSJJAG00000020713)	Cetn1 (ENSJJAG00000010533)	Colec12 (ENSJJAG00000014240)	ENSJJAG00000014893	Usp14 (ENSJJAG00000001720)	Rock1 (ENSJJAG00000012599)	Greb1l (ENSJJAG00000019827)
Kangaroo rat	MODERN SPECIES	410															Cyb5a (ENSDORG00000004719) #19	Cndp2 (ENSDORG00000009686) #22	Cndp1 (ENSDORG00000009688) #23	ENSDORG00000027679 #24	ENSDORG00000030046	Zadh2 (ENSDORG00000008344) #25	ENSDORG00000000351 #26	Zfp236 (ENSDORG00000010273) #30	ENSDORG00000025113 #31	Galr1 (ENSDORG00000028616) #32	Sall3 (ENSDORG00000002702) #33	Atp9b (ENSDORG00000002559) #34	Nfatc1 (ENSDORG00000028944)	Ctdp1 (ENSDORG00000013560)	Slc66a2 (ENSDORG00000011994)	ENSDORG00000024699	Adnp2 (ENSDORG00000023278)
Lagomorpha	ANCESTRAL SPECIES	29	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022.c.a ##8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26
Rabbit	MODERN SPECIES	20	ENSOCUG00000030827	ENSOCUG00000039244	CD226 (ENSOCUG00000012227) #11	RTTN (ENSOCUG00000001384) #13	ENSOCUG00000032498	SOCS6 (ENSOCUG00000001076) #14	ENSOCUG00000031165	ENSOCUG00000026232	ENSOCUG00000004173 #15	NETO1 (ENSOCUG00000007675) #16	ENSOCUG00000011641 #17	ENSOCUG00000014062 #18	CYB5A (ENSOCUG00000016235) #19	C18orf63 (ENSOCUG00000029434) #20	DIPK1C (ENSOCUG00000003995) #21	CNDP2 (ENSOCUG00000004001) #22	CNDP1 (ENSOCUG00000004008) #23	ZNF407 (ENSOCUG00000004015) #24	PTGR3 (ENSOCUG00000008234) #25	TSHZ1 (ENSOCUG00000008235) #26
Pika	MODERN SPECIES	1205																CNDP2 (ENSOPRG00000017312) #22	ENSOPRG00000017313 #23	ENSOPRG00000017314 #24
Laurasiatheria	ANCESTRAL SPECIES	23	ENSGT00930000151022 #8	ENSGT00940000163731	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000172154	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00940000166650	ENSGT00920000149172 #25	ENSGT00940000182276	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00910000145708	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616
Laurasiatheria_a	ANCESTRAL SPECIES	13	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00940000163731	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00940000166650	ENSGT00920000149172 #25	ENSGT00940000182276	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00910000145708	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616
Artiodactyla	ANCESTRAL SPECIES	17	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00940000182276	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00910000145708	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00940000155163.b
Suina	ANCESTRAL SPECIES	12	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00940000155163.b	ENSGT00390000015641	ENSGT00940000153289.b	ENSGT00940000159506
Chacoan peccary	MODERN SPECIES	788	ENSCWAG00000014560	TMX3 (ENSCWAG00000014588) #8	CCDC102B (ENSCWAG00000014625)	DOK6 (ENSCWAG00000014743) #10	CD226 (ENSCWAG00000014813) #11	RTTN (ENSCWAG00000014922) #13	SOCS6 (ENSCWAG00000015739) #14	ENSCWAG00000015753	CBLN2 (ENSCWAG00000015802) #15	NETO1 (ENSCWAG00000015868) #16	FBXO15 (ENSCWAG00000015960) #17	TIMM21 (ENSCWAG00000016025) #18	CYB5A (ENSCWAG00000016075) #19	C18orf63 (ENSCWAG00000016150) #20	ENSCWAG00000016237 #21	CNDP2 (ENSCWAG00000016273) #22	CNDP1 (ENSCWAG00000016346) #23	ENSCWAG00000016614	ENSCWAG00000016648 #24	PTGR3 (ENSCWAG00000016684) #25	TSHZ1 (ENSCWAG00000016715) #26	ZNF516 (ENSCWAG00000016750) #28	ZNF236 (ENSCWAG00000016772) #30	MBP (ENSCWAG00000016987) #31	GALR1 (ENSCWAG00000018025) #32	SALL3 (ENSCWAG00000018066) #33	ATP9B (ENSCWAG00000018143) #34	ENSCWAG00000018247	NFATC1 (ENSCWAG00000018287)	CTDP1 (ENSCWAG00000019223)	ENSCWAG00000019305
Pig	MODERN SPECIES		ENSSSCG00000050338	ENSSSCG00000037349	TMX3 (ENSSSCG00000004884) #8	ENSSSCG00000032084 #9	DOK6 (ENSSSCG00000028977) #10	CD226 (ENSSSCG00000038398) #11	RTTN (ENSSSCG00000032574) #13	SOCS6 (ENSSSCG00000032214) #14	CBLN2 (ENSSSCG00000020859) #15	NETO1 (ENSSSCG00000027654) #16	FBXO15 (ENSSSCG00000004873) #17	TIMM21 (ENSSSCG00000032494) #18	CYB5A (ENSSSCG00000004875) #19	C18orf63 (ENSSSCG00000004874) #20	DIPK1C (ENSSSCG00000039486) #21	CNDP2 (ENSSSCG00000004870) #22	CNDP1 (ENSSSCG00000004869) #23	ENSSSCG00000053589 #24	PTGR3 (ENSSSCG00000032488) #25	TSHZ1 (ENSSSCG00000004861) #26	ENSSSCG00000060932	ENSSSCG00000057943	ZNF516 (ENSSSCG00000004859) #28	ZNF236 (ENSSSCG00000023533) #30	MBP (ENSSSCG00000038767) #31	GALR1 (ENSSSCG00000036984) #32	ENSSSCG00000054407	SALL3 (ENSSSCG00000004858) #33	ENSSSCG00000040521	ATP9B (ENSSSCG00000004857) #34	NFATC1 (ENSSSCG00000004856)
Artiodactyla_a	ANCESTRAL SPECIES	17	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00940000182276	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00910000145708	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00940000155163.b
Camelidae	ANCESTRAL SPECIES	53	ENSGT00940000157031	ENSGT00940000160137	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00550000076117
Arabian camel	MODERN SPECIES	23	CDH7 (ENSCDRG00005013263)	CDH19 (ENSCDRG00005013142)	TMX3 (ENSCDRG00005012981) #8	CCDC102B (ENSCDRG00005012940)	DOK6 (ENSCDRG00005012915) #10	CD226 (ENSCDRG00005012791) #11	RTTN (ENSCDRG00005012707) #13	CBLN2 (ENSCDRG00005012557) #15	NETO1 (ENSCDRG00005012441) #16	FBXO15 (ENSCDRG00005012350) #17	TIMM21 (ENSCDRG00005012305) #18	ENSCDRG00005012281	ENSCDRG00005012150 #19	C18orf63 (ENSCDRG00005012117) #20	ENSCDRG00005012083 #21	CNDP2 (ENSCDRG00005011922) #22	CNDP1 (ENSCDRG00005011713) #23	ENSCDRG00005011697	ENSCDRG00005011659 #24	ENSCDRG00005011596 #24	PTGR3 (ENSCDRG00005011586) #25	TSHZ1 (ENSCDRG00005011569) #26	ZNF516 (ENSCDRG00005011507) #28	ZNF236 (ENSCDRG00005011227) #30	MBP (ENSCDRG00005010386) #31	GALR1 (ENSCDRG00005010287) #32	SALL3 (ENSCDRG00005010105) #33	ATP9B (ENSCDRG00005009917) #34	NFATC1 (ENSCDRG00005009800)	CTDP1 (ENSCDRG00005009526)	KCNG2 (ENSCDRG00005009403)
Artiodactyla_b	ANCESTRAL SPECIES	10	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00940000182276	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00910000145708	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00940000155163.b
Cetacea	ANCESTRAL SPECIES	11	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00940000163731	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00910000145708	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00940000155163.b	ENSGT00390000015641
Odontoceti	ANCESTRAL SPECIES	10	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00910000145708	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00940000155163.b	ENSGT00390000015641	ENSGT00940000160858
Odontoceti_a	ANCESTRAL SPECIES	9	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00910000145708	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00940000155163.b	ENSGT00390000015641	ENSGT00940000160858
Odontoceti_b	ANCESTRAL SPECIES	10	ENSGT00390000012916.y.b.b.b	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770.lb.a #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00890000139472.f.b	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00940000155163.b	ENSGT00390000015641	ENSGT00940000160858
Monodontidae	ANCESTRAL SPECIES	8	ENSGT00390000012916.y.b.b.b	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770.lb.a #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00390000005811.e.a	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00890000139472.f.b	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00940000155163.b	ENSGT00390000015641
Narwhal	MODERN SPECIES	295	ENSMMNG00015004758	DSEL (ENSMMNG00015004756) #7	TMX3 (ENSMMNG00015004726) #8	ENSMMNG00015004712 #9	DOK6 (ENSMMNG00015004699) #10	CD226 (ENSMMNG00015004693) #11	RTTN (ENSMMNG00015004679) #13	SOCS6 (ENSMMNG00015004670) #14	CBLN2 (ENSMMNG00015004661) #15	NETO1 (ENSMMNG00015004652) #16	FBXO15 (ENSMMNG00015004632) #17	TIMM21 (ENSMMNG00015004621) #18	ENSMMNG00015004609 #19	C18orf63 (ENSMMNG00015004599) #20	DIPK1C (ENSMMNG00015004591) #21	CNDP2 (ENSMMNG00015004580) #22	CNDP1 (ENSMMNG00015004558) #23	ZNF407 (ENSMMNG00015004543) #24	PTGR3 (ENSMMNG00015004535) #25	TSHZ1 (ENSMMNG00015004527) #26	ENSMMNG00015004517	ZNF516 (ENSMMNG00015004508) #28	ENSMMNG00015004498	ZNF236 (ENSMMNG00015004434) #30	MBP (ENSMMNG00015004355) #31	GALR1 (ENSMMNG00015004319) #32	SALL3 (ENSMMNG00015004296) #33	ATP9B (ENSMMNG00015004205) #34	NFATC1 (ENSMMNG00015004144)	CTDP1 (ENSMMNG00015004114)	KCNG2 (ENSMMNG00015004101)
Beluga whale	MODERN SPECIES	25	CDH19 (ENSDLEG00000003525)	ENSDLEG00000003520	DSEL (ENSDLEG00000003517) #7	TMX3 (ENSDLEG00000003510) #8	CCDC102B (ENSDLEG00000003496) #9	DOK6 (ENSDLEG00000003478) #10	CD226 (ENSDLEG00000003465) #11	RTTN (ENSDLEG00000003428) #13	CBLN2 (ENSDLEG00000003416) #15	NETO1 (ENSDLEG00000009495) #16	FBXO15 (ENSDLEG00000009385) #17	TIMM21 (ENSDLEG00000009352) #18	ENSDLEG00000009317 #19	C18orf63 (ENSDLEG00000009238) #20	FAM69C (ENSDLEG00000009206) #21	CNDP2 (ENSDLEG00000009101) #22	CNDP1 (ENSDLEG00000009037) #23	ZNF407 (ENSDLEG00000008995) #24	ZADH2 (ENSDLEG00000008976) #25	TSHZ1 (ENSDLEG00000008959) #26	ENSDLEG00000008928	ZNF516 (ENSDLEG00000008884) #28	ZNF236 (ENSDLEG00000007883) #30	ENSDLEG00000007867	MBP (ENSDLEG00000007855) #31	GALR1 (ENSDLEG00000007850) #32	ENSDLEG00000007848	SALL3 (ENSDLEG00000007843) #33	ATP9B (ENSDLEG00000005315) #34	NFATC1 (ENSDLEG00000004971)	ENSDLEG00000004966
Vaquita	MODERN SPECIES	5	DSEL (ENSPSNG00000017875) #7	TMX3 (ENSPSNG00000017796) #8	CCDC102B (ENSPSNG00000017671)	DOK6 (ENSPSNG00000017574) #10	CD226 (ENSPSNG00000017461) #11	ENSPSNG00000017429	RTTN (ENSPSNG00000016449) #13	SOCS6 (ENSPSNG00000016372) #14	CBLN2 (ENSPSNG00000016259) #15	NETO1 (ENSPSNG00000016051) #16	FBXO15 (ENSPSNG00000016021) #17	TIMM21 (ENSPSNG00000015973) #18	ENSPSNG00000015834 #19	C18orf63 (ENSPSNG00000015663) #20	DIPK1C (ENSPSNG00000015542) #21	CNDP2 (ENSPSNG00000015447) #22	CNDP1 (ENSPSNG00000015211) #23	ZNF407 (ENSPSNG00000015129) #24	PTGR3 (ENSPSNG00000015074) #25	TSHZ1 (ENSPSNG00000015019) #26	ZNF516 (ENSPSNG00000014900) #28	ZNF236 (ENSPSNG00000014391) #30	MBP (ENSPSNG00000013612) #31	GALR1 (ENSPSNG00000013471) #32	ENSPSNG00000013413	SALL3 (ENSPSNG00000013174) #33	ATP9B (ENSPSNG00000012909) #34	NFATC1 (ENSPSNG00000012745)	ENSPSNG00000012721	CTDP1 (ENSPSNG00000012690)	KCNG2 (ENSPSNG00000012622)
Dolphin	MODERN SPECIES	360																CNDP2 (ENSTTRG00000012764) #22	CNDP1 (ENSTTRG00000012766) #23	ZNF407 (ENSTTRG00000012774) #24	PTGR3 (ENSTTRG00000012777) #25
Sperm whale	MODERN SPECIES	10	CCDC102B (ENSPCTG00005010246)	DOK6 (ENSPCTG00005010396) #10	CD226 (ENSPCTG00005010438) #11	RTTN (ENSPCTG00005010566) #13	ENSPCTG00005010685	ENSPCTG00005010702	SOCS6 (ENSPCTG00005010719) #14	CBLN2 (ENSPCTG00005010740) #15	NETO1 (ENSPCTG00005010835) #16	ENSPCTG00005011000	FBXO15 (ENSPCTG00005011070) #17	TIMM21 (ENSPCTG00005011204) #18	CYB5A (ENSPCTG00005011274) #19	C19H18orf63 (ENSPCTG00005011353) #20	ENSPCTG00005011486 #21	CNDP2 (ENSPCTG00005011552) #22	CNDP1 (ENSPCTG00005011859) #23	ZNF407 (ENSPCTG00005012106) #24	PTGR3 (ENSPCTG00005012131) #25	TSHZ1 (ENSPCTG00005012158) #26	ZNF516 (ENSPCTG00005012183) #28	ZNF236 (ENSPCTG00005012375) #30	MBP (ENSPCTG00005013054) #31	GALR1 (ENSPCTG00005013906) #32	SALL3 (ENSPCTG00005013970) #33	ATP9B (ENSPCTG00005014193) #34	ENSPCTG00005014376	CTDP1 (ENSPCTG00005014437)	KCNG2 (ENSPCTG00005015311)	PQLC1 (ENSPCTG00005015359)	HSBP1L1 (ENSPCTG00005015498)
Blue whale	MODERN SPECIES	5	CCDC102B (ENSBMSG00010012939)	DOK6 (ENSBMSG00010012950) #10	CD226 (ENSBMSG00010012961) #11	RTTN (ENSBMSG00010012983) #13	ENSBMSG00010013043	ENSBMSG00010013048	SOCS6 (ENSBMSG00010013057) #14	CBLN2 (ENSBMSG00010013061) #15	NETO1 (ENSBMSG00010013073) #16	ENSBMSG00010013087	FBXO15 (ENSBMSG00010013097) #17	TIMM21 (ENSBMSG00010013111) #18	CYB5A (ENSBMSG00010013121) #19	C18orf63 (ENSBMSG00010013137) #20	DIPK1C (ENSBMSG00010013145) #21	CNDP2 (ENSBMSG00010013159) #22	CNDP1 (ENSBMSG00010013181) #23	ZNF407 (ENSBMSG00010013216) #24	PTGR3 (ENSBMSG00010009206) #25	TSHZ1 (ENSBMSG00010009213) #26	ENSBMSG00010009286 #30	ENSBMSG00010009291 #30	ENSBMSG00010009296 #29	MBP (ENSBMSG00010009319) #31	GALR1 (ENSBMSG00010009407) #32	ENSBMSG00010009414	SALL3 (ENSBMSG00010009423) #33	ATP9B (ENSBMSG00010009457) #34	NFATC1 (ENSBMSG00010009496)	ENSBMSG00010009531	CTDP1 (ENSBMSG00010009542)
Pecora	ANCESTRAL SPECIES	26	ENSGT00390000006522.a #7	ENSGT00960000188975	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00940000182276	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00940000155163.b	ENSGT00390000015641
Yarkand deer	MODERN SPECIES	19	ENSCHYG00000023651	TMX3 (ENSCHYG00000023681) #8	ENSCHYG00000023799 #9	ENSCHYG00000024044	DOK6 (ENSCHYG00000024096) #10	CD226 (ENSCHYG00000024147) #11	RTTN (ENSCHYG00000024194) #13	SOCS6 (ENSCHYG00000024272) #14	CBLN2 (ENSCHYG00000024286) #15	NETO1 (ENSCHYG00000024335) #16	FBXO15 (ENSCHYG00000024414) #17	TIMM21 (ENSCHYG00000024465) #18	ENSCHYG00000024552 #19	C18orf63 (ENSCHYG00000024641) #20	ENSCHYG00000024713 #21	CNDP2 (ENSCHYG00000024751) #22	ZNF407 (ENSCHYG00000024817) #24	PTGR3 (ENSCHYG00000024859) #25	TSHZ1 (ENSCHYG00000024880) #26	ZNF516 (ENSCHYG00000024900) #28	ZNF236 (ENSCHYG00000024966) #30	ENSCHYG00000025218 #29	MBP (ENSCHYG00000025251) #31	GALR1 (ENSCHYG00000025374) #32	ENSCHYG00000025397	SALL3 (ENSCHYG00000025411) #33	ATP9B (ENSCHYG00000025490) #34	NFATC1 (ENSCHYG00000025717)	ENSCHYG00000025845	CTDP1 (ENSCHYG00000025858)	KCNG2 (ENSCHYG00000025901)
Percora_a	ANCESTRAL SPECIES	28	ENSGT00390000006522.a #7	ENSGT00960000188975	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00940000182276	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT01030000234871 #29	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00940000155163.b	ENSGT00390000015641
Bovidae	ANCESTRAL SPECIES	28	ENSGT00390000006522.a #7	ENSGT00960000188975	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00940000182276	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT01030000234871 #29	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00940000155163.b	ENSGT00390000015641
Bovinae	ANCESTRAL SPECIES	28	ENSGT00940000154847 #14	ENSGT01100000263528.C	ENSGT01100000263528.D.c.b.b.b.a.a	ENSGT01100000263528.D.c.b.b.b.a.b.a	ENSGT01100000263522.A.d.b.c.b	ENSGT01100000263528.D.c.b.b.b.a.b.b	ENSGT01100000263522.A.d.b.c.a	ENSGT01100000263522.A.d.b.d.b	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00940000182276	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00940000155163.b	ENSGT00390000015641
Bos	ANCESTRAL SPECIES	29	ENSGT00960000188975	ENSGT00940000154276.jb.a.a.a.a.a.a.b.a.b	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT01100000263481.n.a.b.a.b.a.a.a.a.b	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00940000155163.b	ENSGT00390000015641.h
Bos_a	ANCESTRAL SPECIES	73	ENSGT00390000006522.a #7	ENSGT00960000188975	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT01100000263481.n.a.b.a.b.a.a.a.a.b	ENSGT00940000160839 #28	ENSGT01100000263481.n.a.b.b.a.a.a.a.b.a.a.b	ENSGT01030000234871 #29	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00940000155163.b
Domestic yak	MODERN SPECIES	13	ENSBGRG00000020660 #9	ENSBGRG00000020821	DOK6 (ENSBGRG00000020847) #10	CD226 (ENSBGRG00000020891) #11	RTTN (ENSBGRG00000021012) #13	SOCS6 (ENSBGRG00000021607) #14	ENSBGRG00000021635	CBLN2 (ENSBGRG00000021651) #15	NETO1 (ENSBGRG00000021741) #16	FBXO15 (ENSBGRG00000021796) #17	TIMM21 (ENSBGRG00000021856) #18	CYB5A (ENSBGRG00000021982) #19	ENSBGRG00000022137	C18orf63 (ENSBGRG00000022180) #20	DIPK1C (ENSBGRG00000022222) #21	CNDP2 (ENSBGRG00000022281) #22	CNDP1 (ENSBGRG00000022393) #23	ZNF407 (ENSBGRG00000022510) #24	ENSBGRG00000022594	PTGR3 (ENSBGRG00000022621) #25	TSHZ1 (ENSBGRG00000022648) #26	ENSBGRG00000022689	ZNF516 (ENSBGRG00000022703) #28	ENSBGRG00000022789	ZNF236 (ENSBGRG00000022821) #30	ENSBGRG00000023225 #31	GALR1 (ENSBGRG00000023482) #32	SALL3 (ENSBGRG00000023520) #33	ATP9B (ENSBGRG00000023552) #34	NFATC1 (ENSBGRG00000023817)	ENSBGRG00000024239
Wild yak	MODERN SPECIES	1630												FBXO15 (ENSBMUG00000020110) #17	TIMM21 (ENSBMUG00000020076) #18	CYB5A (ENSBMUG00000020045) #19	C18orf63 (ENSBMUG00000020026) #20	CNDP2 (ENSBMUG00000019993) #22	CNDP1 (ENSBMUG00000019940) #23	ENSBMUG00000019917 #24	PTGR3 (ENSBMUG00000019912) #25	TSHZ1 (ENSBMUG00000019900) #26
Bos_b	ANCESTRAL SPECIES	34	ENSGT00960000188975	ENSGT00940000154276.jb.a.a.a.a.a.a.b.a.b	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT01100000263481.n.a.b.a.b.a.a.a.a.b	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00940000155163.b	ENSGT00390000015641.h
Hybrid Bos Indicus	MODERN SPECIES	16	ENSBIXG00005021717 #9	ENSBIXG00005021739	DOK6 (ENSBIXG00005021764) #10	CD226 (ENSBIXG00005003671) #11	ENSBIXG00005021804	RTTN (ENSBIXG00005005751) #13	SOCS6 (ENSBIXG00005021863) #14	CBLN2 (ENSBIXG00005021894) #15	ENSBIXG00005021916	NETO1 (ENSBIXG00005021949) #16	FBXO15 (ENSBIXG00005021977) #17	TIMM21 (ENSBIXG00005021999) #18	CYB5A (ENSBIXG00005022055) #19	C18orf63 (ENSBIXG00005006829) #20	ENSBIXG00005022143 #21	CNDP2 (ENSBIXG00005003778) #22	CNDP1 (ENSBIXG00005022283) #23	ENSBIXG00005022300	ZNF407 (ENSBIXG00005003807) #24	PTGR3 (ENSBIXG00005022385) #25	TSHZ1 (ENSBIXG00005022438) #26	ENSBIXG00005022543	ZNF516 (ENSBIXG00005022566) #28	ENSBIXG00005003864	ENSBIXG00005022637 #29	ZNF236 (ENSBIXG00005022796) #30	MBP (ENSBIXG00005022953) #31	GALR1 (ENSBIXG00005023001) #32	ENSBIXG00005023023	SALL3 (ENSBIXG00005023059) #33	ATP9B (ENSBIXG00005006472) #34
Cow	MODERN SPECIES	16	ENSBTAG00000053985	HIGD1A (ENSBTAG00000034676)	TMX3 (ENSBTAG00000007567) #8	CCDC102B (ENSBTAG00000006726) #9	DOK6 (ENSBTAG00000046957) #10	CD226 (ENSBTAG00000009266) #11	RTTN (ENSBTAG00000013221) #13	SOCS6 (ENSBTAG00000017412) #14	CBLN2 (ENSBTAG00000005985) #15	NETO1 (ENSBTAG00000012889) #16	FBXO15 (ENSBTAG00000009686) #17	TIMM21 (ENSBTAG00000009687) #18	CYB5A (ENSBTAG00000012012) #19	C24H18orf63 (ENSBTAG00000022466) #20	DIPK1C (ENSBTAG00000000106) #21	CNDP2 (ENSBTAG00000009841) #22	CNDP1 (ENSBTAG00000021428) #23	ENSBTAG00000022887 #24	ENSBTAG00000054164 #24	PTGR3 (ENSBTAG00000001724) #25	TSHZ1 (ENSBTAG00000000422) #26	ZNF516 (ENSBTAG00000004650) #28	ENSBTAG00000053937 #29	ZNF236 (ENSBTAG00000017517) #30	MBP (ENSBTAG00000022890) #31	GALR1 (ENSBTAG00000021003) #32	SALL3 (ENSBTAG00000050200) #33	ATP9B (ENSBTAG00000001224) #34	NFATC1 (ENSBTAG00000000656)	CTDP1 (ENSBTAG00000053484)	KCNG2 (ENSBTAG00000013665)
American bison	MODERN SPECIES	3267						RTTN (ENSBBBG00000000925) #13	SOCS6 (ENSBBBG00000001057) #14	ENSBBBG00000001073	ENSBBBG00000001082 #15	NETO1 (ENSBBBG00000001086) #16	FBXO15 (ENSBBBG00000001118) #17	TIMM21 (ENSBBBG00000001146) #18	CYB5A (ENSBBBG00000001172) #19	C18orf63 (ENSBBBG00000001219) #20	ENSBBBG00000001238 #21	CNDP2 (ENSBBBG00000014907) #22	CNDP1 (ENSBBBG00000003660) #23	ENSBBBG00000014828	ENSBBBG00000003649 #24	ENSBBBG00000014816	PTGR3 (ENSBBBG00000014811) #25	ENSBBBG00000002833	TSHZ1 (ENSBBBG00000014803) #26	ZNF516 (ENSBBBG00000014795) #28	ZNF236 (ENSBBBG00000007133) #30	MBP (ENSBBBG00000014716) #31	GALR1 (ENSBBBG00000014588) #32	SALL3 (ENSBBBG00000003511) #33	ATP9B (ENSBBBG00000009131) #34	ENSBBBG00000014441	CTDP1 (ENSBBBG00000003330)
Caprinae	ANCESTRAL SPECIES	25	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847.l #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT01030000234871 #29	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Rambouillet Sheep	MODERN SPECIES	15	CDH19 (ENSOARG00020021263)	DSEL (ENSOARG00020021223) #7	TMX3 (ENSOARG00020020872) #8	DOK6 (ENSOARG00020020719) #10	ENSOARG00020020639 #11	RTTN (ENSOARG00020017785) #13	SOCS6 (ENSOARG00020017675) #14	ENSOARG00020017645	CBLN2 (ENSOARG00020017536) #15	NETO1 (ENSOARG00020017333) #16	ENSOARG00020017244	FBXO15 (ENSOARG00020017103) #17	TIMM21 (ENSOARG00020017050) #18	CYB5A (ENSOARG00020016854) #19	C18orf63 (ENSOARG00020016748) #20	CNDP2 (ENSOARG00020016430) #22	CNDP1 (ENSOARG00020016251) #23	PTGR3 (ENSOARG00020016189) #25	TSHZ1 (ENSOARG00020016102) #26	ENSOARG00020015995 #29	ZNF236 (ENSOARG00020015393) #30	GALR1 (ENSOARG00020015092) #32	ATP9B (ENSOARG00020014579) #34	NFATC1 (ENSOARG00020012783)	CTDP1 (ENSOARG00020012196)	KCNG2 (ENSOARG00020012110)	SLC66A2 (ENSOARG00020011960)	HSBP1L1 (ENSOARG00020011927)	TXNL4A (ENSOARG00020011771)	ENSOARG00020011706	ENSOARG00020011645
Goat	MODERN SPECIES	16	ENSCHIG00000000357 #9	DOK6 (ENSCHIG00000000290) #10	CD226 (ENSCHIG00000000255) #11	RTTN (ENSCHIG00000009958) #13	ENSCHIG00000024754 #14	ENSCHIG00000021728	CBLN2 (ENSCHIG00000018855) #15	NETO1 (ENSCHIG00000013781) #16	ENSCHIG00000009717	ENSCHIG00000009949	FBXO15 (ENSCHIG00000000420) #17	TIMM21 (ENSCHIG00000000355) #18	CYB5A (ENSCHIG00000000287) #19	C18orf63 (ENSCHIG00000000176) #20	DIPK1C (ENSCHIG00000000144) #21	CNDP2 (ENSCHIG00000000112) #22	CNDP1 (ENSCHIG00000010519) #23	ZNF407 (ENSCHIG00000000452) #24	PTGR3 (ENSCHIG00000019084) #25	TSHZ1 (ENSCHIG00000016422) #26	ZNF516 (ENSCHIG00000014196) #28	ENSCHIG00000010813 #29	ZNF236 (ENSCHIG00000000391) #30	ENSCHIG00000000358 #31	GALR1 (ENSCHIG00000000288) #32	ENSCHIG00000000252	SALL3 (ENSCHIG00000000145) #33	ATP9B (ENSCHIG00000018159) #34	NFATC1 (ENSCHIG00000020951)	CTDP1 (ENSCHIG00000016412)	KCNG2 (ENSCHIG00000011977)
Siberian musk deer	MODERN SPECIES	373																CNDP2 (ENSMMSG00000008992) #22	CNDP1 (ENSMMSG00000008827) #23	ZNF407 (ENSMMSG00000008784) #24	PTGR3 (ENSMMSG00000008758) #25	TSHZ1 (ENSMMSG00000008746) #26	ZNF516 (ENSMMSG00000008709) #28	ENSMMSG00000008670 #29	ZNF236 (ENSMMSG00000008516) #30	MBP (ENSMMSG00000008128) #31	GALR1 (ENSMMSG00000008077) #32	SALL3 (ENSMMSG00000007960) #33	ATP9B (ENSMMSG00000007533) #34	NFATC1 (ENSMMSG00000007403)	CTDP1 (ENSMMSG00000007350)	KCNG2 (ENSMMSG00000007319)	SLC66A2 (ENSMMSG00000007214)
Laurasiatheria_b	ANCESTRAL SPECIES	13	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00940000166650	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT01030000234871 #29	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858
Carnivora	ANCESTRAL SPECIES	13	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT01030000234871 #29	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Caniformia	ANCESTRAL SPECIES	9	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000179600	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00550000076117
Caniformia_b	ANCESTRAL SPECIES	25	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000179600	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770.z #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00550000076117
Ursidae	ANCESTRAL SPECIES	23	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770.z #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772.b #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00550000076117
Ursus	ANCESTRAL SPECIES	156			ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535.m #13	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770.z #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000156787 #30	ENSGT00390000014772.b #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071.i #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT01000000215617	ENSGT00550000076117
Polar bear	MODERN SPECIES	128	ENSUMAG00000004368	DSEL (ENSUMAG00000004377) #7	TMX3 (ENSUMAG00000004385) #8	CCDC102B (ENSUMAG00000004396)	DOK6 (ENSUMAG00000004418) #10	CD226 (ENSUMAG00000004424) #11	ENSUMAG00000004435 #13	ENSUMAG00000004474 #13	ENSUMAG00000004554	ENSUMAG00000004564 #15	NETO1 (ENSUMAG00000004574) #16	FBXO15 (ENSUMAG00000004592) #17	TIMM21 (ENSUMAG00000004599) #18	ENSUMAG00000004601 #19	C18orf63 (ENSUMAG00000004610) #20	CNDP2 (ENSUMAG00000004617) #22	CNDP1 (ENSUMAG00000004630) #23	ENSUMAG00000004695	ENSUMAG00000004701 #24	ENSUMAG00000004713 #25	TSHZ1 (ENSUMAG00000004721) #26	ENSUMAG00000004744 #30	ENSUMAG00000004755 #30	MBP (ENSUMAG00000004758) #31	GALR1 (ENSUMAG00000004765) #32	ENSUMAG00000004770 #33	ATP9B (ENSUMAG00000004776) #34	NFATC1 (ENSUMAG00000004785)	CTDP1 (ENSUMAG00000004809)	SLC66A2 (ENSUMAG00000004842)	ENSUMAG00000004867
American black bear	MODERN SPECIES	2971														C18orf63 (ENSUAMG00000009497) #20	DIPK1C (ENSUAMG00000009496) #21	CNDP2 (ENSUAMG00000009495) #22	CNDP1 (ENSUAMG00000009494) #23
Giant Panda	MODERN SPECIES	5	DSEL (ENSAMEG00000019200) #7	TMX3 (ENSAMEG00000018385) #8	CCDC102B (ENSAMEG00000018386)	DOK6 (ENSAMEG00000018387) #10	CD226 (ENSAMEG00000018388) #11	RTTN (ENSAMEG00000018391) #13	SOCS6 (ENSAMEG00000019075) #14	ENSAMEG00000029000	ENSAMEG00000024530 #15	NETO1 (ENSAMEG00000013561) #16	FBXO15 (ENSAMEG00000013571) #17	TIMM21 (ENSAMEG00000013601) #18	ENSAMEG00000029496 #19	C18orf63 (ENSAMEG00000013625) #20	DIPK1C (ENSAMEG00000028067) #21	CNDP2 (ENSAMEG00000004519) #22	CNDP1 (ENSAMEG00000004582) #23	ZNF407 (ENSAMEG00000004614) #24	PTGR3 (ENSAMEG00000018987) #25	TSHZ1 (ENSAMEG00000018999) #26	ZNF516 (ENSAMEG00000028859) #28	ZNF236 (ENSAMEG00000010549) #30	MBP (ENSAMEG00000010530) #31	GALR1 (ENSAMEG00000003075) #32	SALL3 (ENSAMEG00000010206) #33	ATP9B (ENSAMEG00000010214) #34	NFATC1 (ENSAMEG00000010314)	CTDP1 (ENSAMEG00000010355)	KCNG2 (ENSAMEG00000010374)	SLC66A2 (ENSAMEG00000010378)	HSBP1L1 (ENSAMEG00000031443)
Mustelinae	ANCESTRAL SPECIES	5	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000179600	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770.z #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787.kb #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616.f	ENSGT00390000015641	ENSGT00390000002381.a	ENSGT00550000076117	ENSGT00390000010779.a.a
Ferret	MODERN SPECIES	177	CD226 (ENSMPUG00000016604) #11	RTTN (ENSMPUG00000016606) #13	ENSMPUG00000016609	SOCS6 (ENSMPUG00000016614) #14	ENSMPUG00000016616	CBLN2 (ENSMPUG00000016617) #15	NETO1 (ENSMPUG00000016619) #16	ENSMPUG00000016620	ENSMPUG00000016621	FBXO15 (ENSMPUG00000016622) #17	TIMM21 (ENSMPUG00000016626) #18	CYB5A (ENSMPUG00000016630) #19	C18orf63 (ENSMPUG00000016631) #20	ENSMPUG00000016632	DIPK1C (ENSMPUG00000016633) #21	CNDP2 (ENSMPUG00000016634) #22	CNDP1 (ENSMPUG00000016635) #23	ENSMPUG00000016636 #24	TSHZ1 (ENSMPUG00000019613) #26	ENSMPUG00000016637	ZNF516 (ENSMPUG00000016638) #28	ENSMPUG00000019614	ZNF236 (ENSMPUG00000016639) #30	ENSMPUG00000016640 #30	MBP (ENSMPUG00000016641) #31	GALR1 (ENSMPUG00000016642) #32	ENSMPUG00000016643	ENSMPUG00000016645	SALL3 (ENSMPUG00000016646) #33	ATP9B (ENSMPUG00000016647) #34	ENSMPUG00000016649
American mink	MODERN SPECIES	5	DSEL (ENSNVIG00000012159) #7	TMX3 (ENSNVIG00000012103) #8	CCDC102B (ENSNVIG00000012078)	DOK6 (ENSNVIG00000012061) #10	CD226 (ENSNVIG00000011995) #11	RTTN (ENSNVIG00000011935) #13	ENSNVIG00000011898	SOCS6 (ENSNVIG00000011891) #14	CBLN2 (ENSNVIG00000011856) #15	NETO1 (ENSNVIG00000011793) #16	FBXO15 (ENSNVIG00000011734) #17	TIMM21 (ENSNVIG00000011701) #18	CYB5A (ENSNVIG00000011661) #19	C18orf63 (ENSNVIG00000011632) #20	ENSNVIG00000011625 #21	CNDP2 (ENSNVIG00000011561) #22	CNDP1 (ENSNVIG00000011531) #23	ENSNVIG00000011503 #24	PTGR3 (ENSNVIG00000011498) #25	TSHZ1 (ENSNVIG00000011486) #26	ENSNVIG00000011477	ENSNVIG00000011446 #29	ZNF236 (ENSNVIG00000011386) #30	MBP (ENSNVIG00000011283) #31	SALL3 (ENSNVIG00000011252) #33	ATP9B (ENSNVIG00000011196) #34	ENSNVIG00000011185	ENSNVIG00000011164	CTDP1 (ENSNVIG00000011033)	SLC66A2 (ENSNVIG00000010991)	HSBP1L1 (ENSNVIG00000010980)
Canidae	ANCESTRAL SPECIES	58	ENSGT00940000163252	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000179600	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770.ab #19	ENSGT00940000156770.`b.a #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00390000002381.a	ENSGT00550000076117	ENSGT00390000010779.a.a
Canis_lupus	ANCESTRAL SPECIES		ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000179600	ENSGT00940000154847 #14	ENSGT00390000011962.d	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00490000043329.a.a.a.ob.b.a	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770.`b.a #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT01090000260046.e.b.b.a.b.a.a.b.b.b.b.b.a.a.b.a.b.b	ENSGT01030000234871 #29	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00390000002381.a
Dog	MODERN SPECIES		DOK6 (ENSCAFG00845001688) #10	CD226 (ENSCAFG00845001642) #11	RTTN (ENSCAFG00845001271) #13	ENSCAFG00845001204	SOCS6 (ENSCAFG00845001189) #14	ENSCAFG00845001115	CBLN2 (ENSCAFG00845001098) #15	NETO1 (ENSCAFG00845001049) #16	MAPRE1 (ENSCAFG00845001028)	FBXO15 (ENSCAFG00845000996) #17	TIMM21 (ENSCAFG00845000972) #18	ENSCAFG00845000961	CYB5A (ENSCAFG00845000926) #19	C18orf63 (ENSCAFG00845000859) #20	DIPK1C (ENSCAFG00845000817) #21	CNDP2 (ENSCAFG00845000777) #22	CNDP1 (ENSCAFG00845000751) #23	ZNF407 (ENSCAFG00845000698) #24	ZADH2 (ENSCAFG00845000664) #25	TSHZ1 (ENSCAFG00845000638) #26	ZNF516 (ENSCAFG00845000590) #28	ENSCAFG00845000551	ENSCAFG00845000527 #29	ZNF236 (ENSCAFG00845000448) #30	MBP (ENSCAFG00845000353) #31	GALR1 (ENSCAFG00845000275) #32	SALL3 (ENSCAFG00845000191) #33	ATP9B (ENSCAFG00845000134) #34	NFATC1 (ENSCAFG00845000073)	CTDP1 (ENSCAFG00845000045)	ENSCAFG00845000033
Dingo	MODERN SPECIES	125	RTTN (ENSCAFG00020015723) #13	ENSCAFG00020015710	SOCS6 (ENSCAFG00020015708) #14	ENSCAFG00020015689	ENSCAFG00020015683	ENSCAFG00020015675	CBLN2 (ENSCAFG00020015667) #15	NETO1 (ENSCAFG00020015664) #16	ENSCAFG00020015660	ENSCAFG00020015659	FBXO15 (ENSCAFG00020015651) #17	TIMM21 (ENSCAFG00020015649) #18	ENSCAFG00020015638 #19	C18orf63 (ENSCAFG00020015633) #20	DIPK1C (ENSCAFG00020015629) #21	CNDP2 (ENSCAFG00020015390) #22	CNDP1 (ENSCAFG00020015339) #23	ENSCAFG00020015313 #24	PTGR3 (ENSCAFG00020015292) #25	TSHZ1 (ENSCAFG00020015291) #26	ENSCAFG00020015281	ZNF516 (ENSCAFG00020015256) #28	ENSCAFG00020015238	ENSCAFG00020015228 #29	ZNF236 (ENSCAFG00020015152) #30	ENSCAFG00020015125 #31	GALR1 (ENSCAFG00020015114) #32	SALL3 (ENSCAFG00020015092) #33	ATP9B (ENSCAFG00020014769) #34	NFATC1 (ENSCAFG00020014734)	CTDP1 (ENSCAFG00020014667)
Red fox	MODERN SPECIES	25	DSEL (ENSVVUG00000018436) #7	ENSVVUG00000018441	ENSVVUG00000018445	TMX3 (ENSVVUG00000018447) #8	CCDC102B (ENSVVUG00000018460)	ENSVVUG00000018470	DOK6 (ENSVVUG00000018481) #10	RTTN (ENSVVUG00000018491) #13	CBLN2 (ENSVVUG00000018554) #15	NETO1 (ENSVVUG00000018563) #16	FBXO15 (ENSVVUG00000018608) #17	TIMM21 (ENSVVUG00000018616) #18	ENSVVUG00000018623 #19	C18orf63 (ENSVVUG00000018634) #20	DIPK1C (ENSVVUG00000018646) #21	CNDP2 (ENSVVUG00000018647) #22	CNDP1 (ENSVVUG00000018653) #23	ZNF407 (ENSVVUG00000018662) #24	PTGR3 (ENSVVUG00000018671) #25	TSHZ1 (ENSVVUG00000018675) #26	ZNF516 (ENSVVUG00000018686) #28	ZNF236 (ENSVVUG00000018724) #30	MBP (ENSVVUG00000018785) #31	GALR1 (ENSVVUG00000018795) #32	SALL3 (ENSVVUG00000018838) #33	ATP9B (ENSVVUG00000018860) #34	NFATC1 (ENSVVUG00000018908)	ENSVVUG00000018926	CTDP1 (ENSVVUG00000018937)	SLC66A2 (ENSVVUG00000018948)	ENSVVUG00000018958
Felidae	ANCESTRAL SPECIES	24	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00940000163731	ENSGT00950000183198.c.a.b.a.a	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT01030000234871 #29	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Panthera	ANCESTRAL SPECIES	24	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00940000163731	ENSGT00950000183198.c.a.b.a.a	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT01030000234871 #29	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Tiger	MODERN SPECIES	206		TMX3 (ENSPTIG00000011949) #8	CCDC102B (ENSPTIG00000011915)	ENSPTIG00000011910	DOK6 (ENSPTIG00000011903) #10	CD226 (ENSPTIG00000011893) #11	RTTN (ENSPTIG00000011816) #13	SOCS6 (ENSPTIG00000008807) #14	ENSPTIG00000011788 #15	NETO1 (ENSPTIG00000011758) #16	FBXO15 (ENSPTIG00000011735) #17	TIMM21 (ENSPTIG00000011728) #18	CYB5A (ENSPTIG00000011720) #19	C18orf63 (ENSPTIG00000011710) #20	ENSPTIG00000011704 #21	CNDP2 (ENSPTIG00000011679) #22	CNDP1 (ENSPTIG00000011647) #23	ZNF407 (ENSPTIG00000011621) #24	ENSPTIG00000011611 #24	PTGR3 (ENSPTIG00000008802) #25	ZNF236 (ENSPTIG00000011566) #30	MBP (ENSPTIG00000011434) #31	GALR1 (ENSPTIG00000011401) #32	ATP9B (ENSPTIG00000011375) #34	ENSPTIG00000011326	HSBP1L1 (ENSPTIG00000011319)	TXNL4A (ENSPTIG00000011304)	ENSPTIG00000011288	ENSPTIG00000011268	ADNP2 (ENSPTIG00000011252)	ENSPTIG00000008795
Panthera_a	ANCESTRAL SPECIES	26	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00940000163731	ENSGT00950000183198.c.a.b.a.a	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT01030000234871 #29	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
leopard	MODERN SPECIES	95									CBLN2 (ENSPPRG00000012031) #15	NETO1 (ENSPPRG00000012326) #16	FBXO15 (ENSPPRG00000012358) #17	ENSPPRG00000012387 #18	CYB5A (ENSPPRG00000012505) #19	C18orf63 (ENSPPRG00000012554) #20	DIPK1C (ENSPPRG00000012575) #21	CNDP2 (ENSPPRG00000012633) #22	CNDP1 (ENSPPRG00000012701) #23	ZNF407 (ENSPPRG00000012723) #24	ENSPPRG00000012742 #24	PTGR3 (ENSPPRG00000012748) #25	TSHZ1 (ENSPPRG00000011295) #26	ZNF516 (ENSPPRG00000012759) #28	ENSPPRG00000012771 #29	ZNF236 (ENSPPRG00000012906) #30	MBP (ENSPPRG00000013404) #31	GALR1 (ENSPPRG00000013426) #32	ATP9B (ENSPPRG00000013726) #34	NFATC1 (ENSPPRG00000013969)	CTDP1 (ENSPPRG00000014019)	KCNG2 (ENSPPRG00000014050)	SLC66A2 (ENSPPRG00000014124)
Cat	MODERN SPECIES	243	ENSFCAG00000052092	TMX3 (ENSFCAG00000023020) #8	CCDC102B (ENSFCAG00000015556)	ENSFCAG00000026408	DOK6 (ENSFCAG00000004167) #10	CD226 (ENSFCAG00000023562) #11	RTTN (ENSFCAG00000009192) #13	SOCS6 (ENSFCAG00000009195) #14	CBLN2 (ENSFCAG00000040188) #15	NETO1 (ENSFCAG00000015031) #16	FBXO15 (ENSFCAG00000010279) #17	TIMM21 (ENSFCAG00000027980) #18	CYB5A (ENSFCAG00000029619) #19	CD3H18orf63 (ENSFCAG00000011958) #20	DIPK1C (ENSFCAG00000008272) #21	CNDP2 (ENSFCAG00000008274) #22	CNDP1 (ENSFCAG00000008275) #23	ZNF407 (ENSFCAG00000031567) #24	PTGR3 (ENSFCAG00000008278) #25	TSHZ1 (ENSFCAG00000036924) #26	ZNF516 (ENSFCAG00000031855) #28	ZNF236 (ENSFCAG00000001780) #30	MBP (ENSFCAG00000034257) #31	ENSFCAG00000053046	GALR1 (ENSFCAG00000008682) #32	SALL3 (ENSFCAG00000028839) #33	ATP9B (ENSFCAG00000008455) #34	NFATC1 (ENSFCAG00000000884)	CTDP1 (ENSFCAG00000000566)	KCNG2 (ENSFCAG00000040828)	SLC66A2 (ENSFCAG00000000567)
Laurasiatheria_c	ANCESTRAL SPECIES	24	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446.j #24	ENSGT00940000166650	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858
Chiroptera	ANCESTRAL SPECIES	26	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000172154	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446.j #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Microchiroptera	ANCESTRAL SPECIES	26	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446.j #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Microbat	MODERN SPECIES	1019	DOK6 (ENSMLUG00000008202) #10	CD226 (ENSMLUG00000008219) #11	ENSMLUG00000026202	RTTN (ENSMLUG00000008228) #13	SOCS6 (ENSMLUG00000006873) #14	ENSMLUG00000015784	ENSMLUG00000022614	ENSMLUG00000022821	CBLN2 (ENSMLUG00000004727) #15	NETO1 (ENSMLUG00000010614) #16	FBXO15 (ENSMLUG00000011427) #17	TIMM21 (ENSMLUG00000011440) #18	CYB5A (ENSMLUG00000011462) #19	C18orf63 (ENSMLUG00000028665) #20	DIPK1C (ENSMLUG00000029517) #21	CNDP2 (ENSMLUG00000002721) #22	CNDP1 (ENSMLUG00000002726) #23	ZNF407 (ENSMLUG00000001226) #24	PTGR3 (ENSMLUG00000000306) #25	TSHZ1 (ENSMLUG00000000305) #26	ZNF516 (ENSMLUG00000003250) #28	ZNF236 (ENSMLUG00000011089) #30	MBP (ENSMLUG00000011157) #31	GALR1 (ENSMLUG00000011174) #32	ENSMLUG00000028402
Greater horseshoe bat	MODERN SPECIES	10	CDH19 (ENSRFEG00010017501)	DSEL (ENSRFEG00010017584) #7	TMX3 (ENSRFEG00010017615) #8	CCDC102B (ENSRFEG00010017705)	DOK6 (ENSRFEG00010017854) #10	CD226 (ENSRFEG00010017901) #11	RTTN (ENSRFEG00010017950) #13	SOCS6 (ENSRFEG00010018100) #14	CBLN2 (ENSRFEG00010018116) #15	NETO1 (ENSRFEG00010018182) #16	FBXO15 (ENSRFEG00010018221) #17	TIMM21 (ENSRFEG00010018249) #18	CYB5A (ENSRFEG00010018285) #19	C18orf63 (ENSRFEG00010018438) #20	DIPK1C (ENSRFEG00010018462) #21	CNDP2 (ENSRFEG00010018518) #22	CNDP1 (ENSRFEG00010018609) #23	ENSRFEG00010018943 #24	PTGR3 (ENSRFEG00010019004) #25	TSHZ1 (ENSRFEG00010019021) #26	ZNF516 (ENSRFEG00010019046) #28	ZNF236 (ENSRFEG00010019074) #30	ENSRFEG00010019164 #29	MBP (ENSRFEG00010019222) #31	GALR1 (ENSRFEG00010019399) #32	ENSRFEG00010019419 #33	ATP9B (ENSRFEG00010019457) #34	NFATC1 (ENSRFEG00010019522)	CTDP1 (ENSRFEG00010019640)	KCNG2 (ENSRFEG00010019655)	ENSRFEG00010019698
Megabat	MODERN SPECIES	2922															ENSPVAG00000004957 #21	CNDP2 (ENSPVAG00000004958) #22	CNDP1 (ENSPVAG00000004959) #23	ZNF407 (ENSPVAG00000004961) #24
Equus	ANCESTRAL SPECIES	36	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847.i #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446.j #24	ENSGT00940000166650	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Donkey	MODERN SPECIES	27	ENSEASG00005000268	DSEL (ENSEASG00005030919) #7	TMX3 (ENSEASG00005000260) #8	ENSEASG00005000195 #9	DOK6 (ENSEASG00005000117) #10	CD226 (ENSEASG00005023102) #11	RTTN (ENSEASG00005023092) #13	ENSEASG00005024669 #14	CBLN2 (ENSEASG00005029253) #15	NETO1 (ENSEASG00005023072) #16	FBXO15 (ENSEASG00005023066) #17	TIMM21 (ENSEASG00005023065) #18	ENSEASG00005027637 #19	C18orf63 (ENSEASG00005023060) #20	DIPK1C (ENSEASG00005023059) #21	CNDP2 (ENSEASG00005023057) #22	ENSEASG00005023054 #23	ENSEASG00005038204 #24
Horse	MODERN SPECIES	29	DSEL (ENSECAG00000024756) #7	TMX3 (ENSECAG00000024758) #8	CCDC102B (ENSECAG00000002784) #9	ENSECAG00000050818	DOK6 (ENSECAG00000003159) #10	CD226 (ENSECAG00000007623) #11	RTTN (ENSECAG00000009711) #13	SOCS6 (ENSECAG00000051862) #14	CBLN2 (ENSECAG00000033234) #15	NETO1 (ENSECAG00000014149) #16	FBXO15 (ENSECAG00000016377) #17	TIMM21 (ENSECAG00000016833) #18	CYB5A (ENSECAG00000017581) #19	C8H18orf63 (ENSECAG00000017611) #20	DIPK1C (ENSECAG00000018225) #21	CNDP2 (ENSECAG00000043835) #22	CNDP1 (ENSECAG00000022986) #23	ZNF407 (ENSECAG00000001496) #24	PTGR3 (ENSECAG00000002635) #25	TSHZ1 (ENSECAG00000002955) #26	ZNF516 (ENSECAG00000003761) #28	ZNF236 (ENSECAG00000005459) #30	ENSECAG00000050762 #30	MBP (ENSECAG00000010961) #31	GALR1 (ENSECAG00000014845) #32	SALL3 (ENSECAG00000015414) #33	NFATC1 (ENSECAG00000019813) #34	ENSECAG00000045161	CTDP1 (ENSECAG00000021835)	KCNG2 (ENSECAG00000034020)	SLC66A2 (ENSECAG00000042673)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000156500 #22
Hedgehog	MODERN SPECIES	3004																ENSEEUG00000006990 #22
Atlantogenata	ANCESTRAL SPECIES	22	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00940000166650	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Afrotheria	ANCESTRAL SPECIES	23	ENSGT00940000154835.C	ENSGT00940000157031	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00940000166650	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Afrotheria_a	ANCESTRAL SPECIES	22	ENSGT00940000154835.C	ENSGT00940000157031	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00940000166650	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Elephant	MODERN SPECIES	375	CDH7 (ENSLAFG00000016391)	ENSLAFG00000008219	ENSLAFG00000026322	DSEL (ENSLAFG00000027810) #7	TMX3 (ENSLAFG00000014107) #8	DOK6 (ENSLAFG00000013307) #10	ENSLAFG00000013311 #11	RTTN (ENSLAFG00000013313) #13	SOCS6 (ENSLAFG00000009337) #14	ENSLAFG00000030809 #15	NETO1 (ENSLAFG00000009759) #16	FBXO15 (ENSLAFG00000018628) #17	TIMM21 (ENSLAFG00000018631) #18	CYB5A (ENSLAFG00000010020) #19	ENSLAFG00000004544 #21	CNDP2 (ENSLAFG00000028844) #22	CNDP1 (ENSLAFG00000010969) #23	ENSLAFG00000009611	ENSLAFG00000026800 #24	ENSLAFG00000025849	PTGR3 (ENSLAFG00000015694) #25	TSHZ1 (ENSLAFG00000027654) #26	ENSLAFG00000005840 #28	ENSLAFG00000031333 #28	ENSLAFG00000007752	ENSLAFG00000032306 #30	ENSLAFG00000007757 #31	GALR1 (ENSLAFG00000027134) #32	SALL3 (ENSLAFG00000013521) #33	ATP9B (ENSLAFG00000012641) #34	NFATC1 (ENSLAFG00000008297)
Hyrax	MODERN SPECIES	2369																ENSPCAG00000016059 #22
Tenrec	MODERN SPECIES	4458																CNDP2 (ENSETEG00000002835) #22
Xenarthra	ANCESTRAL SPECIES	1039														ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24
Armadillo	MODERN SPECIES	3952														C18orf63 (ENSDNOG00000025845) #20	DIPK1C (ENSDNOG00000048032) #21	CNDP2 (ENSDNOG00000040930) #22	ENSDNOG00000037160	CNDP1 (ENSDNOG00000016990) #23	ENSDNOG00000016991 #24
Sloth	MODERN SPECIES	7888																ENSCHOG00000000828 #22
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00550000076117
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00550000076117
Diprotodontia	ANCESTRAL SPECIES	1	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00550000076117
Diprotodontia_a	ANCESTRAL SPECIES		ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00950000182967.a.c.b	ENSGT00940000159054.j	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770.i #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00550000076117
koala	MODERN SPECIES	3											FBXO15 (ENSPCIG00000006410) #17	TIMM21 (ENSPCIG00000006413) #18	ENSPCIG00000006416 #19	C18orf63 (ENSPCIG00000006419) #20	DIPK1C (ENSPCIG00000009872) #21	CNDP2 (ENSPCIG00000022137) #22	CNDP1 (ENSPCIG00000022140) #23	ENSPCIG00000036127	ENSPCIG00000022145 #24	ENSPCIG00000022152 #24	PTGR3 (ENSPCIG00000024213) #25	TSHZ1 (ENSPCIG00000032577) #26	ACTBL2 (ENSPCIG00000036711)	GPBP1 (ENSPCIG00000024724)	MIER3 (ENSPCIG00000013512)	SETD9 (ENSPCIG00000013507)	MAP3K1 (ENSPCIG00000013501)	ENSPCIG00000013500	ENSPCIG00000010377	IL6ST (ENSPCIG00000024769)	ENSPCIG00000024763
Common wonbat	MODERN SPECIES	599	ENSVURG00010019647	ENSVURG00010019649	ENSVURG00010019654	ENSVURG00010019658	ENSVURG00010019664	ENSVURG00010019674	ENSVURG00010019684	CBLN2 (ENSVURG00010019691) #15	NETO1 (ENSVURG00010019720) #16	ENSVURG00010019736	FBXO15 (ENSVURG00010019742) #17	TIMM21 (ENSVURG00010019746) #18	ENSVURG00010019754 #19	C18orf63 (ENSVURG00010019760) #20	DIPK1C (ENSVURG00010019772) #21	CNDP2 (ENSVURG00010019786) #22	CNDP1 (ENSVURG00010019817) #23	ENSVURG00010020045 #24	PTGR3 (ENSVURG00010020053) #25	TSHZ1 (ENSVURG00010020060) #26	ZNF516 (ENSVURG00010020066) #28	ZNF236 (ENSVURG00010020072) #30	MBP (ENSVURG00010020099) #31	GALR1 (ENSVURG00010020125) #32	SALL3 (ENSVURG00010020136) #33	ATP9B (ENSVURG00010020173) #34	NFATC1 (ENSVURG00010020234)	CTDP1 (ENSVURG00010020249)	KCNG2 (ENSVURG00010020329)	SLC66A2 (ENSVURG00010020339)	HSBP1L1 (ENSVURG00010020347)
Wallaby	DUPLICATION
Wallaby	DUPLICATION
Wallaby	MODERN SPECIES	13766																ENSMEUG00000003670 #22
Wallaby	MODERN SPECIES	12925																ENSMEUG00000002828 #22
Wallaby	MODERN SPECIES	10292																ENSMEUG00000014903 #22
Tasmanian devil	MODERN SPECIES		TMX3 (ENSSHAG00000001318) #8	ENSSHAG00000021092 #9	DOK6 (ENSSHAG00000008431) #10	ENSSHAG00000028556	ENSSHAG00000022678 #11	RTTN (ENSSHAG00000012406) #13	SOCS6 (ENSSHAG00000024549) #14	CBLN2 (ENSSHAG00000025530) #15	NETO1 (ENSSHAG00000001697) #16	ENSSHAG00000022932	FBXO15 (ENSSHAG00000029170) #17	TIMM21 (ENSSHAG00000028322) #18	CYB5A (ENSSHAG00000006748) #19	C18orf63 (ENSSHAG00000007427) #20	DIPK1C (ENSSHAG00000008858) #21	CNDP2 (ENSSHAG00000009489) #22	CNDP1 (ENSSHAG00000009859) #23	ZNF407 (ENSSHAG00000010961) #24	PTGR3 (ENSSHAG00000014471) #25	TSHZ1 (ENSSHAG00000014804) #26	ENSSHAG00000030697	ZNF516 (ENSSHAG00000009007) #28	ZNF236 (ENSSHAG00000013079) #30	MBP (ENSSHAG00000027590) #31	GALR1 (ENSSHAG00000028513) #32	SALL3 (ENSSHAG00000015872) #33	ATP9B (ENSSHAG00000000789) #34	NFATC1 (ENSSHAG00000009139)	CTDP1 (ENSSHAG00000012579)	KCNG2 (ENSSHAG00000028558)	SLC66A2 (ENSSHAG00000026775)
Opossum	MODERN SPECIES	2	ENSMODG00000021399 #11	RTTN (ENSMODG00000021398) #13	ENSMODG00000037767	ENSMODG00000021397	SOCS6 (ENSMODG00000021396) #14	ENSMODG00000036897	ENSMODG00000024691	ENSMODG00000048297	ENSMODG00000012418 #15	NETO1 (ENSMODG00000012411) #16	FBXO15 (ENSMODG00000012399) #17	TIMM21 (ENSMODG00000037747) #18	CYB5A (ENSMODG00000012386) #19	C18orf63 (ENSMODG00000012384) #20	DIPK1C (ENSMODG00000012378) #21	CNDP2 (ENSMODG00000012371) #22	CNDP1 (ENSMODG00000012366) #23	ZNF407 (ENSMODG00000012332) #24	ENSMODG00000000365	PTGR3 (ENSMODG00000012320) #25	TSHZ1 (ENSMODG00000012317) #26	ENSMODG00000046201	ZNF516 (ENSMODG00000012315) #28	ENSMODG00000045385	ZNF236 (ENSMODG00000012304) #30	MBP (ENSMODG00000012291) #31	ENSMODG00000027479	GALR1 (ENSMODG00000012282) #32	SALL3 (ENSMODG00000012231) #33	ATP9B (ENSMODG00000012216) #34	NFATC1 (ENSMODG00000012018)
Platypus	MODERN SPECIES	85													DIPK1C (ENSOANG00000040718) #21	CNDP1 (ENSOANG00000013446) #23	ENSOANG00000013445 #24	CNDP2 (ENSOANG00000013448) #22	ENSOANG00000045662 #24	TSHZ1 (ENSOANG00000040889) #26	ENSOANG00000049310 #28	ZNF236 (ENSOANG00000005983) #30	MBP (ENSOANG00000039093) #31	GALR1 (ENSOANG00000047844) #32	SALL3 (ENSOANG00000010135) #33	ATP9B (ENSOANG00000010134) #34	NFATC1 (ENSOANG00000030248)	KCNG2 (ENSOANG00000040534)	SLC66A2 (ENSOANG00000042001)	ENSOANG00000040140	TXNL4A (ENSOANG00000012931)	ENSOANG00000050699	ENSOANG00000044635
Sauria	ANCESTRAL SPECIES		ENSGT00390000006522.a #7	ENSGT01050000244866.A.a.a.b	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000165015	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Archelosauria	ANCESTRAL SPECIES	5	ENSGT00390000006522.a #7	ENSGT01050000244866.A.a.a.b	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000165015	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Archosauria	ANCESTRAL SPECIES		ENSGT00390000006522.a #7	ENSGT01050000244866.A.a.a.b	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00550000076117
Aves	ANCESTRAL SPECIES	9	ENSGT00390000006522.a #7	ENSGT01050000244866.A.a.a.b	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32
Neognathae	ANCESTRAL SPECIES		ENSGT00390000006522.a #7	ENSGT01050000244866.A.a.a.b	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00390000014242	ENSGT00390000013934	ENSGT00390000008115	ENSGT00940000153270.a	ENSGT00940000153717.a.a	ENSGT00940000155112.B	ENSGT00950000183108.a
Galloanserae	ANCESTRAL SPECIES		ENSGT00390000006522.a #7	ENSGT01050000244866.A.a.a.b	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00390000014242	ENSGT00390000013934	ENSGT00390000008115	ENSGT00940000153270.a	ENSGT00940000153717.a.a	ENSGT00940000155112.B	ENSGT00950000183108.a
Anatidae	ANCESTRAL SPECIES	3	ENSGT00390000006522.a #7	ENSGT01050000244866.A.a.a.b	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00390000014242	ENSGT00390000013934	ENSGT00390000008115	ENSGT00940000153270.a	ENSGT00940000153717.a.a	ENSGT00940000155112.B	ENSGT00950000183108.a
Pink-footed goose	MODERN SPECIES	14	ENSABRG00000018678	ENSABRG00000018692	TMX3 (ENSABRG00000018719) #8	ENSABRG00000018730 #9	DOK6 (ENSABRG00000018757) #10	CD226 (ENSABRG00000018763) #11	RTTN (ENSABRG00000018775) #13	SOCS6 (ENSABRG00000018805) #14	CBLN2 (ENSABRG00000018823) #15	NETO1 (ENSABRG00000018829) #16	FBXO15 (ENSABRG00000018889) #17	TIMM21 (ENSABRG00000018894) #18	CYB5A (ENSABRG00000018905) #19	C18orf63 (ENSABRG00000018918) #20	DIPK1C (ENSABRG00000018929) #21	CNDP2 (ENSABRG00000018931) #22	CNDP1 (ENSABRG00000018941) #23	ZNF407 (ENSABRG00000018959) #24	PTGR3 (ENSABRG00000018972) #25	TSHZ1 (ENSABRG00000018981) #26	ZNF516 (ENSABRG00000018997) #28	ZNF236 (ENSABRG00000019008) #30	MBP (ENSABRG00000019050) #31	ENSABRG00000019054	TDP2 (ENSABRG00000019066)	ACOT13 (ENSABRG00000019070)	C6orf62 (ENSABRG00000019077)	GMNN (ENSABRG00000019086)	RIPOR2 (ENSABRG00000019098)	CARMIL1 (ENSABRG00000019131)	SCGN (ENSABRG00000019181)
Duck	MODERN SPECIES	10	ENSAPLG00000019540	ENSAPLG00000022601	TMX3 (ENSAPLG00000010231) #8	ENSAPLG00000002342 #9	DOK6 (ENSAPLG00000008778) #10	ENSAPLG00000030695 #13	ENSAPLG00000008843 #13	ENSAPLG00000021502	ENSAPLG00000030542	CBLN2 (ENSAPLG00000009670) #15	NETO1 (ENSAPLG00000009839) #16	FBXO15 (ENSAPLG00000012462) #17	CYB5A (ENSAPLG00000025505) #19	ENSAPLG00000028433	DIPK1C (ENSAPLG00000009958) #21	CNDP2 (ENSAPLG00000009010) #22	CNDP1 (ENSAPLG00000008937) #23	ZNF407 (ENSAPLG00000015102) #24	ENSAPLG00000020727	PTGR3 (ENSAPLG00000000703) #25	TSHZ1 (ENSAPLG00000015100) #26	ZNF516 (ENSAPLG00000015083) #28	ZNF236 (ENSAPLG00000014682) #30	MBP (ENSAPLG00000014659) #31	GALR1 (ENSAPLG00000011047) #32	TDP2 (ENSAPLG00000030813)	ACOT13 (ENSAPLG00000024331)	C6orf62 (ENSAPLG00000013019)	GMNN (ENSAPLG00000013031)	RIPOR2 (ENSAPLG00000013099)	CARMIL1 (ENSAPLG00000016185)
Phasianidae	ANCESTRAL SPECIES	1	ENSGT01050000244866.A.a.a.b	ENSGT00930000151022 #8	ENSGT00940000163731	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993.a #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787.u.a #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00390000014242	ENSGT00390000013934	ENSGT00390000008115	ENSGT00940000153270.a	ENSGT00940000153717.a.a	ENSGT00940000155112.B	ENSGT00950000183108.a
Phasianidae_b	ANCESTRAL SPECIES	1	ENSGT00390000006522.a #7	ENSGT01050000244866.A.a.a.b	ENSGT00930000151022 #8	ENSGT00940000163731	ENSGT00940000158760 #10	ENSGT00500000044993.a #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787.u.a #30	ENSGT00390000014772.g #31	ENSGT00940000159286.b	ENSGT00390000014242	ENSGT00390000013934	ENSGT00390000008115	ENSGT00940000153270.a	ENSGT00940000153717.a.a	ENSGT00940000155112.B	ENSGT00950000183108.a
Turkey	MODERN SPECIES	22	ENSMGAG00000009591	SMCHD1 (ENSMGAG00000009642)	ENSMGAG00000009739	ENSMGAG00000009700	ENSMGAG00000008509	SOCS6 (ENSMGAG00000015440) #14	ENSMGAG00000008306 #13	ENSMGAG00000021272 #11	ENSMGAG00000008393 #11	CBLN2 (ENSMGAG00000008302) #15	ENSMGAG00000008273 #16	ENSMGAG00000015437 #25	ENSMGAG00000018954	ENSMGAG00000008121 #24	ENSMGAG00000008124 #23	ENSMGAG00000008157 #22	DIPK1C (ENSMGAG00000008201) #21	TIMM21 (ENSMGAG00000008261) #18	ENSMGAG00000008213 #19	C18orf63 (ENSMGAG00000008208) #20	ENSMGAG00000007802	ENSMGAG00000007795	ENSMGAG00000007830	ENSMGAG00000007821	ENSMGAG00000019137	ENSMGAG00000021838	ENSMGAG00000017743	ENSMGAG00000007842	ENSMGAG00000019200	ENSMGAG00000007965	ENSMGAG00000007931
Chicken	MODERN SPECIES	11	TMX3 (ENSGALG00010001203) #8	CCDC102B (ENSGALG00010001235)	DOK6 (ENSGALG00010001168) #10	ENSGALG00010001162 #11	RTTN (ENSGALG00010001159) #13	SOCS6 (ENSGALG00010001225) #14	CBLN2 (ENSGALG00010001268) #15	ENSGALG00010001259	NETO1 (ENSGALG00010001254) #16	ENSGALG00010001239	FBXO15 (ENSGALG00010002346) #17	TIMM21 (ENSGALG00010001157) #18	CYB5A (ENSGALG00010001155) #19	C18orf63 (ENSGALG00010001148) #20	FAM69C (ENSGALG00010001146) #21	CNDP2 (ENSGALG00010001233) #22	CNDP1 (ENSGALG00010001231) #23	ZNF407 (ENSGALG00010001229) #24	PTGR3 (ENSGALG00010001154) #25	TSHZ1 (ENSGALG00010001153) #26	ZNF516 (ENSGALG00010007867) #28	ZNF236 (ENSGALG00010007795) #30	MBP (ENSGALG00010007781) #31	GALR1 (ENSGALG00010007717)	TDP2 (ENSGALG00010008035)	ACOT13 (ENSGALG00010008033)	C2H6ORF62 (ENSGALG00010008027)	GMNN (ENSGALG00010008017)	FAM65B (ENSGALG00010007994)	CARMIL1 (ENSGALG00010007973)	SCGN (ENSGALG00010007953)
Japanese quail	MODERN SPECIES	11	ENSCJPG00005007546	ENSCJPG00005007505	TMX3 (ENSCJPG00005007502) #8	ENSCJPG00005007493 #9	DOK6 (ENSCJPG00005007476) #10	CD226 (ENSCJPG00005007459) #11	RTTN (ENSCJPG00005007458) #13	SOCS6 (ENSCJPG00005007455) #14	CBLN2 (ENSCJPG00005007436) #15	NETO1 (ENSCJPG00005007427) #16	TIMM21 (ENSCJPG00005007370) #18	FBXO15 (ENSCJPG00005007363) #17	CYB5A (ENSCJPG00005007362) #19	C18orf63 (ENSCJPG00005007359) #20	DIPK1C (ENSCJPG00005007321) #21	CNDP2 (ENSCJPG00005007320) #22	CNDP1 (ENSCJPG00005007319) #23	ZNF407 (ENSCJPG00005007318) #24	PTGR3 (ENSCJPG00005007262) #25	TSHZ1 (ENSCJPG00005007261) #26	ZNF516 (ENSCJPG00005007179) #28	ZNF236 (ENSCJPG00005007161) #30	MBP (ENSCJPG00005007160) #31	GALR1 (ENSCJPG00005007144) #32	TDP2 (ENSCJPG00005007142)	ACOT13 (ENSCJPG00005007119)	C6orf62 (ENSCJPG00005007118)	ENSCJPG00005007117	RIPOR2 (ENSCJPG00005007113)	CARMIL1 (ENSCJPG00005007109)	SCGN (ENSCJPG00005007081)
Neognathae_b	ANCESTRAL SPECIES	3	ENSGT00390000006522.a #7	ENSGT01050000244866.A.a.a.b	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00390000014242	ENSGT00390000013934	ENSGT00390000008115	ENSGT00940000153270.a	ENSGT00940000153717.a.a	ENSGT00940000155112.B	ENSGT00950000183108.a
Passeriformes	ANCESTRAL SPECIES		ENSGT00390000006522.a #7	ENSGT01050000244866.A.a.a.b	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00960000190252	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00390000014242	ENSGT00390000013934	ENSGT00390000008115	ENSGT00940000153270.a	ENSGT00940000153717.a.a	ENSGT00940000155112.B	ENSGT00950000183108.a
Passeriformes_d	ANCESTRAL SPECIES		ENSGT00390000006522.a #7	ENSGT01050000244866.A.a.a.b	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00960000190252	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00390000014242	ENSGT00390000013934	ENSGT00390000008115	ENSGT00940000153270.a	ENSGT00940000153717.a.a	ENSGT00940000155112.B	ENSGT00950000183108.a.h
Passeriformes_g	ANCESTRAL SPECIES	3	ENSGT00390000006522.a #7	ENSGT01050000244866.A.a.a.b	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00960000190252	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00390000014242	ENSGT00390000013934	ENSGT00390000008115	ENSGT00940000153270.a	ENSGT00940000153717.a.a	ENSGT00940000155112.B	ENSGT00950000183108.a.h
Medium ground finch	MODERN SPECIES	14									CBLN2 (ENSGFOG00000000930) #15	NETO1 (ENSGFOG00000000902) #16	FBXO15 (ENSGFOG00000000888) #17	TIMM21 (ENSGFOG00000000877) #18	CYB5A (ENSGFOG00000000871) #19	C18orf63 (ENSGFOG00000000862) #20	DIPK1C (ENSGFOG00000000854) #21	CNDP2 (ENSGFOG00000000844) #22	CNDP1 (ENSGFOG00000000836) #23	ZNF407 (ENSGFOG00000000825) #24	PTGR3 (ENSGFOG00000000820) #25	TSHZ1 (ENSGFOG00000000816) #26	ZNF516 (ENSGFOG00000000810) #28	ZNF236 (ENSGFOG00000000761) #30	MBP (ENSGFOG00000000734) #31	GALR1 (ENSGFOG00000000726) #32	TDP2 (ENSGFOG00000000715)	ACOT13 (ENSGFOG00000000710)	C6orf62 (ENSGFOG00000000703)	GMNN (ENSGFOG00000000698)	RIPOR2 (ENSGFOG00000000680)	CARMIL1 (ENSGFOG00000000607)	SCGN (ENSGFOG00000000560)
Passeroidea	ANCESTRAL SPECIES	2	ENSGT00390000006522.a #7	ENSGT01050000244866.A.a.a.b	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00960000190252	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00390000014242	ENSGT00390000013934	ENSGT00390000008115	ENSGT00940000153270.a	ENSGT00940000153717.a.a	ENSGT00940000155112.B	ENSGT00950000183108.a.h
Common canary	MODERN SPECIES		DSEL (ENSSCAG00000007755) #7	ENSSCAG00000007728	TMX3 (ENSSCAG00000007716) #8	ENSSCAG00000007690 #9	DOK6 (ENSSCAG00000007671) #10	ENSSCAG00000007655	RTTN (ENSSCAG00000007638) #13	SOCS6 (ENSSCAG00000007631) #14	CBLN2 (ENSSCAG00000007603) #15	NETO1 (ENSSCAG00000007599) #16	FBXO15 (ENSSCAG00000007578) #17	TIMM21 (ENSSCAG00000007572) #18	ENSSCAG00000007566	C18orf63 (ENSSCAG00000007561) #20	DIPK1C (ENSSCAG00000007558) #21	CNDP2 (ENSSCAG00000007552) #22	CNDP1 (ENSSCAG00000007535) #23	ZNF407 (ENSSCAG00000007532) #24	PTGR3 (ENSSCAG00000007510) #25	TSHZ1 (ENSSCAG00000007501) #26	ZNF516 (ENSSCAG00000007476) #28	ZNF236 (ENSSCAG00000007444) #30	MBP (ENSSCAG00000007416) #31	GALR1 (ENSSCAG00000007394) #32	TDP2 (ENSSCAG00000007372)	ACOT13 (ENSSCAG00000007367)	C6orf62 (ENSSCAG00000007363)	GMNN (ENSSCAG00000007357)	RIPOR2 (ENSSCAG00000007353)	CARMIL1 (ENSSCAG00000007329)	SCGN (ENSSCAG00000007320)
Zebra finch	MODERN SPECIES	12	CDH19 (ENSTGUG00000009319)	TMX3 (ENSTGUG00000009298) #8	ENSTGUG00000009269	DSEL (ENSTGUG00000020055) #7	DOK6 (ENSTGUG00000009250) #10	ENSTGUG00000028827	RTTN (ENSTGUG00000009221) #13	SOCS6 (ENSTGUG00000020323) #14	CBLN2 (ENSTGUG00000009205) #15	NETO1 (ENSTGUG00000009188) #16	FBXO15 (ENSTGUG00000009178) #17	TIMM21 (ENSTGUG00000023415) #18	CYB5A (ENSTGUG00000009166) #19	C18orf63 (ENSTGUG00000024091) #20	DIPK1C (ENSTGUG00000009165) #21	CNDP2 (ENSTGUG00000009147) #22	CNDP1 (ENSTGUG00000009132) #23	ZNF407 (ENSTGUG00000009124) #24	PTGR3 (ENSTGUG00000024919) #25	TSHZ1 (ENSTGUG00000009111) #26	ZNF516 (ENSTGUG00000009106) #28	ZNF236 (ENSTGUG00000009074) #30	MBP (ENSTGUG00000009051) #31	GALR1 (ENSTGUG00000024217) #32	TDP2 (ENSTGUG00000009035)	ENSTGUG00000020283	C6orf62 (ENSTGUG00000029400)	GMNN (ENSTGUG00000009018)	RIPOR2 (ENSTGUG00000008974)	CARMIL1 (ENSTGUG00000008921)	SCGN (ENSTGUG00000008902)
Flycatcher	MODERN SPECIES	11	CDH19 (ENSFALG00000006582)	DSEL (ENSFALG00000014587) #7	ENSFALG00000004556	TMX3 (ENSFALG00000024148) #8	ENSFALG00000004570 #9	DOK6 (ENSFALG00000004574) #10	RTTN (ENSFALG00000004592) #13	SOCS6 (ENSFALG00000014598) #14	CBLN2 (ENSFALG00000004624) #15	NETO1 (ENSFALG00000004630) #16	FBXO15 (ENSFALG00000023381) #17	TIMM21 (ENSFALG00000028573) #18	CYB5A (ENSFALG00000026908) #19	C18orf63 (ENSFALG00000004643) #20	DIPK1C (ENSFALG00000026013) #21	CNDP2 (ENSFALG00000004651) #22	CNDP1 (ENSFALG00000004655) #23	ZNF407 (ENSFALG00000004663) #24	PTGR3 (ENSFALG00000022974) #25	TSHZ1 (ENSFALG00000004672) #26	ZNF516 (ENSFALG00000004674) #28	ZNF236 (ENSFALG00000004682) #30	MBP (ENSFALG00000004700) #31	TDP2 (ENSFALG00000004710)	GALR1 (ENSFALG00000026015) #32	C6orf62 (ENSFALG00000004718)	GMNN (ENSFALG00000028466)	RIPOR2 (ENSFALG00000004725)	CARMIL1 (ENSFALG00000004729)	SCGN (ENSFALG00000004743)	ENSFALG00000004746
Great tit	MODERN SPECIES	11	ENSPMJG00000014342	TMX3 (ENSPMJG00000014341) #8	ENSPMJG00000014340 #9	ENSPMJG00000014339	DOK6 (ENSPMJG00000014338) #10	ENSPMJG00000014337	RTTN (ENSPMJG00000014336) #13	SOCS6 (ENSPMJG00000014334) #14	CBLN2 (ENSPMJG00000014331) #15	NETO1 (ENSPMJG00000014329) #16	FBXO15 (ENSPMJG00000014326) #17	TIMM21 (ENSPMJG00000014325) #18	CYB5A (ENSPMJG00000014324) #19	C18orf63 (ENSPMJG00000014323) #20	DIPK1C (ENSPMJG00000014322) #21	CNDP2 (ENSPMJG00000014321) #22	CNDP1 (ENSPMJG00000014320) #23	ZNF407 (ENSPMJG00000014319) #24	PTGR3 (ENSPMJG00000014316) #25	TSHZ1 (ENSPMJG00000014315) #26	ZNF516 (ENSPMJG00000014303) #28	ZNF236 (ENSPMJG00000014287) #30	MBP (ENSPMJG00000014269) #31	GALR1 (ENSPMJG00000014259) #32	TDP2 (ENSPMJG00000014256)	ACOT13 (ENSPMJG00000014254)	C6orf62 (ENSPMJG00000014252)	GMNN (ENSPMJG00000014251)	RIPOR2 (ENSPMJG00000014241)	CARMIL1 (ENSPMJG00000014196)	SCGN (ENSPMJG00000014177)
Neognathae_c	ANCESTRAL SPECIES	1	ENSGT00390000006522.a #7	ENSGT01050000244866.A.a.a.b	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00390000014242	ENSGT00390000013934	ENSGT00390000008115	ENSGT00940000153270.a	ENSGT00940000153717.a.a.d	ENSGT00940000155112.B	ENSGT00950000183108.a
Golden eagle	MODERN SPECIES	20	DSEL (ENSACCG00020012221) #7	ENSACCG00020012347	TMX3 (ENSACCG00020012466) #8	DOK6 (ENSACCG00020012502) #10	CD226 (ENSACCG00020012523) #11	RTTN (ENSACCG00020012616) #13	SOCS6 (ENSACCG00020012840) #14	CBLN2 (ENSACCG00020012853) #15	ENSACCG00020012863 #15	NETO1 (ENSACCG00020012902) #16	FBXO15 (ENSACCG00020012948) #17	TIMM21 (ENSACCG00020012965) #18	CYB5A (ENSACCG00020012983) #19	C18orf63 (ENSACCG00020013011) #20	DIPK1C (ENSACCG00020013033) #21	CNDP2 (ENSACCG00020013045) #22	CNDP1 (ENSACCG00020013081) #23	ZNF407 (ENSACCG00020013097) #24	PTGR3 (ENSACCG00020013119) #25	TSHZ1 (ENSACCG00020013133) #26	ZNF516 (ENSACCG00020013209) #28	ZNF236 (ENSACCG00020013273) #30	MBP (ENSACCG00020013328) #31	GALR1 (ENSACCG00020013352) #32	TDP2 (ENSACCG00020013366)	ACOT13 (ENSACCG00020013391)	C6orf62 (ENSACCG00020013408)	GMNN (ENSACCG00020013420)	RIPOR2 (ENSACCG00020000812)	CARMIL1 (ENSACCG00020001099)	SCGN (ENSACCG00020001271)
Kakapo	MODERN SPECIES		DLGAP1 (ENSSHBG00005010073)	ENSSHBG00005010098	ENSSHBG00005010107	ZBTB14 (ENSSHBG00005010118)	EPB41L3 (ENSSHBG00005010140)	TMEM200C (ENSSHBG00005010241)	ARHGAP28 (ENSSHBG00005010310)	LAMA1 (ENSSHBG00005000448)	LRRC30 (ENSSHBG00005000506)	ENSSHBG00005000569	FBXO15 (ENSSHBG00005000593) #17	TIMM21 (ENSSHBG00005000597) #18	CYB5A (ENSSHBG00005002134) #19	C18orf63 (ENSSHBG00005002153) #20	DIPK1C (ENSSHBG00005002169) #21	CNDP2 (ENSSHBG00005002177) #22	CNDP1 (ENSSHBG00005002189) #23	ENSSHBG00005002206 #24	PTGR3 (ENSSHBG00005002221) #25	TSHZ1 (ENSSHBG00005002225) #26	ZNF516 (ENSSHBG00005002233) #28	ZNF236 (ENSSHBG00005002251) #30	MBP (ENSSHBG00005002306) #31	GALR1 (ENSSHBG00005002321) #32	TDP2 (ENSSHBG00005002339)	ACOT13 (ENSSHBG00005002348)	C6orf62 (ENSSHBG00005002355)	GMNN (ENSSHBG00005002373)	ENSSHBG00005002398	ENSSHBG00005002417	CARMIL1 (ENSSHBG00005002905)
African ostrich	MODERN SPECIES	444								ENSSCUG00000006727 #15	CBLN2 (ENSSCUG00000006725) #15	NETO1 (ENSSCUG00000006723) #16	FBXO15 (ENSSCUG00000006715) #17	TIMM21 (ENSSCUG00000006712) #18	CYB5A (ENSSCUG00000006710) #19	C18orf63 (ENSSCUG00000006707) #20	DIPK1C (ENSSCUG00000006706) #21	CNDP2 (ENSSCUG00000006701) #22	CNDP1 (ENSSCUG00000006700) #23	ZNF407 (ENSSCUG00000006697) #24	PTGR3 (ENSSCUG00000006693) #25	TSHZ1 (ENSSCUG00000006692) #26	ZNF516 (ENSSCUG00000006686) #28	ZNF236 (ENSSCUG00000010711) #30	MBP (ENSSCUG00000010705) #31
Australian saltwater crocodile	MODERN SPECIES		ENSCPRG00005006536 #9	DOK6 (ENSCPRG00005006474) #10	CD226 (ENSCPRG00005006419) #11	RTTN (ENSCPRG00005006116) #13	SOCS6 (ENSCPRG00005005997) #14	ENSCPRG00005005883	CBLN2 (ENSCPRG00005005790) #15	NETO1 (ENSCPRG00005005685) #16	ENSCPRG00005005612	FBXO15 (ENSCPRG00005005597) #17	TIMM21 (ENSCPRG00005005595) #18	ENSCPRG00005004956	CYB5A (ENSCPRG00005004883) #19	C18orf63 (ENSCPRG00005004874) #20	DIPK1C (ENSCPRG00005004872) #21	CNDP2 (ENSCPRG00005004864) #22	CNDP1 (ENSCPRG00005004822) #23	ZNF407 (ENSCPRG00005004813) #24	PTGR3 (ENSCPRG00005004797) #25	TSHZ1 (ENSCPRG00005004790) #26	ZNF516 (ENSCPRG00005004768) #28	ZNF236 (ENSCPRG00005004724) #30	MBP (ENSCPRG00005004693) #31	GALR1 (ENSCPRG00005004675) #32	SALL3 (ENSCPRG00005004655) #33	ATP9B (ENSCPRG00005004634) #34	NFATC1 (ENSCPRG00005004588)	CTDP1 (ENSCPRG00005004546)	KCNG2 (ENSCPRG00005004501)	SLC66A2 (ENSCPRG00005004499)	ENSCPRG00005004444
Cryptodira	ANCESTRAL SPECIES	7	ENSGT00390000006522.a #7	ENSGT01050000244866.A.a.a.b	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000165015	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839.a #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Testudinoidea	ANCESTRAL SPECIES		ENSGT00390000006522.a #7	ENSGT01050000244866.A.a.a.b	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535.g #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770.nb #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000165015	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839.a #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00960000192768	ENSGT00940000159356.a.a #33	ENSGT00940000157071.k #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858
Emydidae	ANCESTRAL SPECIES		ENSGT00390000006522.a #7	ENSGT01050000244866.A.a.a.b	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535.g #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770.nb #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000165015	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839.a #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00960000192768	ENSGT00940000159356.a.a #33	ENSGT00940000157071.k #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858
Three-toed box turtle	MODERN SPECIES	24	ENSTMTG00000008662	TMX3 (ENSTMTG00000008634) #8	ENSTMTG00000008478 #9	DOK6 (ENSTMTG00000008444) #10	ENSTMTG00000008420 #11	RTTN (ENSTMTG00000008297) #13	SOCS6 (ENSTMTG00000008281) #14	CBLN2 (ENSTMTG00000008252) #15	NETO1 (ENSTMTG00000008219) #16	FBXO15 (ENSTMTG00000008121) #17	TIMM21 (ENSTMTG00000008093) #18	ENSTMTG00000008008	CYB5A (ENSTMTG00000007989) #19	C18orf63 (ENSTMTG00000007952) #20	DIPK1C (ENSTMTG00000007933) #21	CNDP2 (ENSTMTG00000007881) #22	CNDP1 (ENSTMTG00000007816) #23	ENSTMTG00000007793	ZNF407 (ENSTMTG00000007768) #24	PTGR3 (ENSTMTG00000007763) #25	TSHZ1 (ENSTMTG00000007752) #26	ZNF516 (ENSTMTG00000007742) #28	ZNF236 (ENSTMTG00000007282) #30	MBP (ENSTMTG00000007225) #31	GALR1 (ENSTMTG00000007182) #32	ENSTMTG00000007169	SALL3 (ENSTMTG00000007130) #33	ATP9B (ENSTMTG00000002000) #34	NFATC1 (ENSTMTG00000001575)	CTDP1 (ENSTMTG00000001557)	KCNG2 (ENSTMTG00000001551)
painted turtle	MODERN SPECIES	2417	TMX3 (ENSCPBG00000028421) #8	ENSCPBG00000028422 #9	DOK6 (ENSCPBG00000028424) #10	CD226 (ENSCPBG00000028425) #11	RTTN (ENSCPBG00000028426) #13	SOCS6 (ENSCPBG00000028427) #14	ENSCPBG00000028428	CBLN2 (ENSCPBG00000028433) #15	NETO1 (ENSCPBG00000028434) #16	FBXO15 (ENSCPBG00000028436) #17	TIMM21 (ENSCPBG00000028437) #18	ENSCPBG00000002553	CYB5A (ENSCPBG00000002585) #19	C18orf63 (ENSCPBG00000002599) #20	DIPK1C (ENSCPBG00000002616) #21	CNDP2 (ENSCPBG00000002620) #22	CNDP1 (ENSCPBG00000002643) #23	ENSCPBG00000002680	ZNF407 (ENSCPBG00000003382) #24	PTGR3 (ENSCPBG00000003407) #25	TSHZ1 (ENSCPBG00000003416) #26	ZNF516 (ENSCPBG00000003442) #28	ZNF236 (ENSCPBG00000003495) #30	MBP (ENSCPBG00000003570) #31	GALR1 (ENSCPBG00000003627) #32	SALL3 (ENSCPBG00000003657) #33	ATP9B (ENSCPBG00000003736) #34	NFATC1 (ENSCPBG00000003948)	CTDP1 (ENSCPBG00000004073)	KCNG2 (ENSCPBG00000006404)	SLC66A2 (ENSCPBG00000006405)
Testudinidae	ANCESTRAL SPECIES	4	ENSGT00390000006522.a #7	ENSGT01050000244866.A.a.a.b	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535.g #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770.nb #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484.c #23	ENSGT00940000165015	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839.a #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00960000192768	ENSGT00940000159356.a.a #33	ENSGT00940000157071.k #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858
Abingdon island giant tortoise	MODERN SPECIES	2841										FBXO15 (ENSCABG00000022105) #17	TIMM21 (ENSCABG00000022106) #18	ENSCABG00000022107	CYB5A (ENSCABG00000022203) #19	C18orf63 (ENSCABG00000022205) #20	DIPK1C (ENSCABG00000022207) #21	CNDP2 (ENSCABG00000022209) #22	ENSCABG00000022212	ENSCABG00000022215 #23
Goode s thornscrub tortoise	MODERN SPECIES	11	ENSGEVG00005014665 #9	DOK6 (ENSGEVG00005014573) #10	CD226 (ENSGEVG00005014545) #11	RTTN (ENSGEVG00005012942) #13	SOCS6 (ENSGEVG00005012713) #14	CBLN2 (ENSGEVG00005012554) #15	NETO1 (ENSGEVG00005012417) #16	FBXO15 (ENSGEVG00005011997) #17	TIMM21 (ENSGEVG00005011942) #18	ENSGEVG00005011903	ENSGEVG00005011868 #19	ENSGEVG00005011727 #20	ENSGEVG00005011682 #19	ENSGEVG00005011584 #20	DIPK1C (ENSGEVG00005011536) #21	CNDP2 (ENSGEVG00005011450) #22	CNDP1 (ENSGEVG00005011192) #23	ENSGEVG00005010963	ZNF407 (ENSGEVG00005010897) #24	PTGR3 (ENSGEVG00005010867) #25	TSHZ1 (ENSGEVG00005010849) #26	ZNF516 (ENSGEVG00005010828) #28	ZNF236 (ENSGEVG00005010706) #30	MBP (ENSGEVG00005010577) #31	GALR1 (ENSGEVG00005010471) #32	ENSGEVG00005010422	SALL3 (ENSGEVG00005010347) #33	ATP9B (ENSGEVG00005010218) #34	NFATC1 (ENSGEVG00005009488)	CTDP1 (ENSGEVG00005009311)	KCNG2 (ENSGEVG00005009267)
Chinese turtle	MODERN SPECIES	960	TMX3 (ENSPSIG00000003273) #8	ENSPSIG00000000406 #9	ENSPSIG00000003259 #9	DOK6 (ENSPSIG00000003255) #10	CD226 (ENSPSIG00000003251) #11	RTTN (ENSPSIG00000003193) #13	ENSPSIG00000003179	CBLN2 (ENSPSIG00000003176) #15	NETO1 (ENSPSIG00000003161) #16	ENSPSIG00000000399	FBXO15 (ENSPSIG00000003070) #17	TIMM21 (ENSPSIG00000003061) #18	ENSPSIG00000003041	C18orf63 (ENSPSIG00000003033) #20	DIPK1C (ENSPSIG00000003023) #21	CNDP2 (ENSPSIG00000002975) #22	CNDP1 (ENSPSIG00000002925) #23	ENSPSIG00000002898	ZNF407 (ENSPSIG00000002896) #24	PTGR3 (ENSPSIG00000002882) #25	TSHZ1 (ENSPSIG00000002872) #26	ENSPSIG00000002867 #28
Lepidosauria	ANCESTRAL SPECIES	2	ENSGT00390000006522.a #7	ENSGT01050000244866.A.a.a.b	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000165015	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Episquamata	ANCESTRAL SPECIES	1	ENSGT00390000006522.a #7	ENSGT01050000244866.A.a.a.b	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000165015	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Laterata	ANCESTRAL SPECIES	5	ENSGT00940000157031	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT01050000244866.A.a.a.b	ENSGT00930000151022 #8	ENSGT00730000110960.a.b #9	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000165015	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a
Argentine black and white tegu	MODERN SPECIES	4	CDH7 (ENSSMRG00000003587)	ENSSMRG00000003602	DSEL (ENSSMRG00000003609) #7	ENSSMRG00000003617	DOK6 (ENSSMRG00000003995) #10	RTTN (ENSSMRG00000004003) #13	SOCS6 (ENSSMRG00000004025) #14	ENSSMRG00000004035	CBLN2 (ENSSMRG00000004042) #15	NETO1 (ENSSMRG00000004045) #16	FBXO15 (ENSSMRG00000004054) #17	TIMM21 (ENSSMRG00000004064) #18	CYB5A (ENSSMRG00000004067) #19	C18orf63 (ENSSMRG00000004070) #20	DIPK1C (ENSSMRG00000004073) #21	CNDP2 (ENSSMRG00000004084) #22	ENSSMRG00000004092	CNDP1 (ENSSMRG00000004094) #23	ZNF407 (ENSSMRG00000004168) #24	PTGR3 (ENSSMRG00000004173) #25	TSHZ1 (ENSSMRG00000004177) #26	ZNF516 (ENSSMRG00000004193) #28	ZNF236 (ENSSMRG00000004202) #30	MBP (ENSSMRG00000004291) #31	ENSSMRG00000004319	ENSSMRG00000004391	SALL3 (ENSSMRG00000004402) #33	ATP9B (ENSSMRG00000004423) #34	NFATC1 (ENSSMRG00000004483)	CTDP1 (ENSSMRG00000004596)	KCNG2 (ENSSMRG00000004647)
Toxicofera	ANCESTRAL SPECIES	8	ENSGT00940000157031	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00550000076117
Elapidae	ANCESTRAL SPECIES	8	ENSGT00940000157031	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535.l #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446.c #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071.n #34	ENSGT00940000157616.b	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00390000010779.b
Indian cobra	MODERN SPECIES	2	CDH19 (ENSNNAG00000012338)	DSEL (ENSNNAG00000012302) #7	TMX3 (ENSNNAG00000012273) #8	DOK6 (ENSNNAG00000012250) #10	ENSNNAG00000012228 #11	ENSNNAG00000012198 #13	ENSNNAG00000012142 #13	SOCS6 (ENSNNAG00000012131) #14	ENSNNAG00000012098	CBLN2 (ENSNNAG00000012087) #15	NETO1 (ENSNNAG00000012046) #16	FBXO15 (ENSNNAG00000011984) #17	TIMM21 (ENSNNAG00000011964) #18	CYB5A (ENSNNAG00000011918) #19	DIPK1C (ENSNNAG00000011900) #21	CNDP2 (ENSNNAG00000010123) #22	CNDP1 (ENSNNAG00000009992) #23	ENSNNAG00000009958 #24	PTGR3 (ENSNNAG00000009930) #25	TSHZ1 (ENSNNAG00000009919) #26	ZNF516 (ENSNNAG00000009905) #28	ZNF236 (ENSNNAG00000009158) #30	MBP (ENSNNAG00000009059) #31	GALR1 (ENSNNAG00000008972) #32	SALL3 (ENSNNAG00000008844) #33	ATP9B (ENSNNAG00000006407) #34	NFATC1 (ENSNNAG00000006157)	CTDP1 (ENSNNAG00000005809)	KCNG2 (ENSNNAG00000015316)	SLC66A2 (ENSNNAG00000015286)	ENSNNAG00000015259
Elapidae_a	ANCESTRAL SPECIES	14	ENSGT00940000157031.c	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535.l #13	ENSGT00640000091535.k #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446.c #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071.n #34	ENSGT00940000157616.b	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00390000010779.b
Acanthophiinae	ANCESTRAL SPECIES	16	ENSGT00940000157031.c	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00940000158760 #10	ENSGT00990000214277	ENSGT00500000044993 #11	ENSGT00640000091535.k #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000156446.c #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071.n #34	ENSGT00940000157616.b	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00390000010779.b
Eastern brown snake	MODERN SPECIES	11	TMX3 (ENSPTXG00000017278) #8	DOK6 (ENSPTXG00000017280) #10	ENSPTXG00000017284	ENSPTXG00000017285 #11	RTTN (ENSPTXG00000017288) #13	ENSPTXG00000017292	ENSPTXG00000017293	CBLN2 (ENSPTXG00000017294) #15	NETO1 (ENSPTXG00000017295) #16	ENSPTXG00000017296	FBXO15 (ENSPTXG00000017297) #17	TIMM21 (ENSPTXG00000017298) #18	CYB5A (ENSPTXG00000017299) #19	ENSPTXG00000000041	DIPK1C (ENSPTXG00000000057) #21	CNDP2 (ENSPTXG00000000070) #22	CNDP1 (ENSPTXG00000000103) #23	ZNF407 (ENSPTXG00000000154) #24	PTGR3 (ENSPTXG00000000213) #25	TSHZ1 (ENSPTXG00000000230) #26	ZNF516 (ENSPTXG00000000238) #28	ZNF236 (ENSPTXG00000000343) #30	MBP (ENSPTXG00000000515) #31	GALR1 (ENSPTXG00000000530) #32	SALL3 (ENSPTXG00000000547) #33	ATP9B (ENSPTXG00000000615) #34	NFATC1 (ENSPTXG00000000626)	CTDP1 (ENSPTXG00000000637)	KCNG2 (ENSPTXG00000000642)	SLC66A2 (ENSPTXG00000000645)	ENSPTXG00000000647
Mainland tiger snake	MODERN SPECIES	30											FBXO15 (ENSNSUG00000013515) #17	TIMM21 (ENSNSUG00000013516) #18	CYB5A (ENSNSUG00000013517) #19	C18orf63 (ENSNSUG00000013518) #20	DIPK1C (ENSNSUG00000013519) #21	CNDP2 (ENSNSUG00000013521) #22	CNDP1 (ENSNSUG00000013523) #23	ZNF407 (ENSNSUG00000013524) #24	PTGR3 (ENSNSUG00000013569) #25	TSHZ1 (ENSNSUG00000013570) #26	ZNF516 (ENSNSUG00000013572) #28	ZNF236 (ENSNSUG00000013573) #30	MBP (ENSNSUG00000013576) #31	GALR1 (ENSNSUG00000013582) #32	SALL3 (ENSNSUG00000013583) #33	ATP9B (ENSNSUG00000013594) #34	NFATC1 (ENSNSUG00000016698)	CTDP1 (ENSNSUG00000016700)	KCNG2 (ENSNSUG00000016702)	SLC66A2 (ENSNSUG00000016703)	ENSNSUG00000016704
Blue-lipped sea krait	MODERN SPECIES	67																CNDP2 (ENSLLTG00000012298) #22
Lizard	MODERN SPECIES	3	DOK6 (ENSACAG00000011732) #10	ENSACAG00000044225	ENSACAG00000039125	CD226 (ENSACAG00000011729) #11	RTTN (ENSACAG00000011576) #13	ENSACAG00000045415	ENSACAG00000042376	CBLN2 (ENSACAG00000003828) #15	NETO1 (ENSACAG00000003789) #16	ENSACAG00000042139	FBXO15 (ENSACAG00000003780) #17	TIMM21 (ENSACAG00000003778) #18	CYB5A (ENSACAG00000034676) #19	C18orf63 (ENSACAG00000003727) #20	DIPK1C (ENSACAG00000003723) #21	CNDP2 (ENSACAG00000003653) #22	CNDP1 (ENSACAG00000003637) #23	ENSACAG00000044218	ENSACAG00000023951 #24	ENSACAG00000042708	PTGR3 (ENSACAG00000005316) #25	TSHZ1 (ENSACAG00000042445) #26	ENSACAG00000038594	ZNF516 (ENSACAG00000005332) #28	ZNF236 (ENSACAG00000005340) #30	MBP (ENSACAG00000005477) #31	GALR1 (ENSACAG00000005481) #32	ENSACAG00000040253	SALL3 (ENSACAG00000000478) #33	ATP9B (ENSACAG00000000552) #34	NFATC1 (ENSACAG00000000941)
tuatara	MODERN SPECIES	1321										FBXO15 (ENSSPUG00000000288) #17	TIMM21 (ENSSPUG00000000392) #18	ENSSPUG00000000445	ENSSPUG00000000449	CYB5A (ENSSPUG00000000463) #19	DIPK1C (ENSSPUG00000000469) #21	CNDP2 (ENSSPUG00000000484) #22	CNDP1 (ENSSPUG00000000504) #23	ENSSPUG00000000546	ENSSPUG00000000570 #24	ENSSPUG00000000620 #24	ENSSPUG00000000651 #24	PTGR3 (ENSSPUG00000000667) #25	TSHZ1 (ENSSPUG00000000680) #26	ZNF516 (ENSSPUG00000000695) #28	ZNF236 (ENSSPUG00000000709) #30	ENSSPUG00000000813 #31	ENSSPUG00000000823 #31	GALR1 (ENSSPUG00000000828) #32
Anura	ANCESTRAL SPECIES	1	ENSGT00940000157031	ENSGT00940000160137	ENSGT00390000006522.a #7	ENSGT00930000151022 #8	ENSGT00940000158760 #10	ENSGT00500000044993 #11	ENSGT00640000091535 #13	ENSGT00940000154847 #14	ENSGT00940000159988 #15	ENSGT00940000156700 #16	ENSGT00390000017498 #17	ENSGT00390000011552 #18	ENSGT00940000156770 #19	ENSGT00390000007627 #20	ENSGT00390000006452.a #21	ENSGT00940000156500 #22	ENSGT00940000160484 #23	ENSGT00940000165015	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00950000182905.b.l	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641	ENSGT00940000160858
Frog	MODERN SPECIES	6	atp9b (ENSXETG00000000852) #34	sall3 (ENSXETG00000000845) #33	ENSXETG00000014690	ENSXETG00000024894	galr1 (ENSXETG00000014693) #32	mbp (ENSXETG00000010788) #31	znf236 (ENSXETG00000010789) #30	znf516 (ENSXETG00000039699) #28	ENSXETG00000042220	tshz1 (ENSXETG00000039942) #26	zadh2 (ENSXETG00000037014) #25	znf407 (ENSXETG00000040326) #24	darmin (ENSXETG00000026681)	cndp1 (ENSXETG00000023564) #23	dipk1c (ENSXETG00000023563) #21	cndp2 (ENSXETG00000023561) #22	cyb5a (ENSXETG00000042691) #19	timm21 (ENSXETG00000023559) #18	fbxo15 (ENSXETG00000023558) #17	neto1 (ENSXETG00000016864) #16	cbln2 (ENSXETG00000016861) #15	ENSXETG00000035754	socs6 (ENSXETG00000048969) #14	rttn (ENSXETG00000039976) #13	ENSXETG00000015643 #11	DOK6 (ENSXETG00000033116) #10	tmx3 (ENSXETG00000015637) #8	dsel (ENSXETG00000046620) #7	cdh19 (ENSXETG00000015623)	cdh7 (ENSXETG00000014706)	ENSXETG00000046327
Leishan spiny toad	MODERN SPECIES	8	RTTN (ENSLLEG00000029808) #13	SOCS6 (ENSLLEG00000029898) #14	CBLN2 (ENSLLEG00000029905) #15	ENSLLEG00000029913	ENSLLEG00000029922	NETO1 (ENSLLEG00000029939) #16	ENSLLEG00000029971	FBXO15 (ENSLLEG00000005352) #17	ENSLLEG00000005428	TIMM21 (ENSLLEG00000005437) #18	CYB5A (ENSLLEG00000005484) #19	C18orf63 (ENSLLEG00000005546) #20	ENSLLEG00000005729	ENSLLEG00000005738	DIPK1C (ENSLLEG00000005753) #21	CNDP2 (ENSLLEG00000005785) #22	ENSLLEG00000005927	CNDP1 (ENSLLEG00000005941) #23	ENSLLEG00000006007	ZNF407 (ENSLLEG00000006125) #24	ENSLLEG00000006182	PTGR3 (ENSLLEG00000006201) #25	TSHZ1 (ENSLLEG00000006227) #26	ENSLLEG00000006283	ZNF516 (ENSLLEG00000006310) #28	ENSLLEG00000006430	ENSLLEG00000006445	ENSLLEG00000006459	ENSLLEG00000006494 #30	ENSLLEG00000006734 #30	ENSLLEG00000006788 #30
Coelacanth	MODERN SPECIES	297		CBLN2 (ENSLACG00000003584) #15	ENSLACG00000003874	ENSLACG00000022360	NETO1 (ENSLACG00000007110) #16	ENSLACG00000013903	ENSLACG00000014721	ENSLACG00000015875	FBXO15 (ENSLACG00000016141) #17	TIMM21 (ENSLACG00000016361) #18	ENSLACG00000016399	si:dkey-29d8.3 (ENSLACG00000016561)	CYB5A (ENSLACG00000016749) #19	C18orf63 (ENSLACG00000022364) #20	DIPK1C (ENSLACG00000017069) #21	CNDP2 (ENSLACG00000017191) #22	cndp1 (ENSLACG00000017272)	ENSLACG00000017488 #24	ENSLACG00000017829 #24
Actinopterygii	ANCESTRAL SPECIES	155														ENSGT00390000004886	ENSGT00510000051337	ENSGT00940000156500 #22	ENSGT00940000165015	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00940000182276	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616	ENSGT00390000015641
Neopterygii	ANCESTRAL SPECIES	215													ENSGT00390000004886	ENSGT00940000158302.e	ENSGT00510000051337	ENSGT00940000156500 #22	ENSGT00940000165015	ENSGT00940000160484 #23	ENSGT00940000156446 #24	ENSGT00920000149172 #25	ENSGT00940000182276	ENSGT00950000183051.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT01030000234871 #29	ENSGT00390000014772 #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.a #33	ENSGT00940000157071 #34	ENSGT00940000157616
Osteoglossocephalai	ANCESTRAL SPECIES	515														ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00950000183051.a.a.a #26
Clupeocephala	ANCESTRAL SPECIES	19															ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00950000183051.a.a.a #26	ENSGT00940000160839 #28	ENSGT00940000156787 #30	ENSGT00390000014772.l #31	ENSGT00390000014772.k #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.b ##33	ENSGT00940000157071 #34	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000162855.a.a.a.b
Otomorpha	ANCESTRAL SPECIES	9															ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00950000183051.a.a.a #26	ENSGT00940000161408	ENSGT00390000014772.k #31	ENSGT01050000244841.A.b.a.b.a.a #32	ENSGT00940000159356.a.b ##33	ENSGT00940000157071 #34	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000162855.a.a.a.b	ENSGT00390000002661.b.ub.a	ENSGT00530000063880.b.e
Clupeiformes	ANCESTRAL SPECIES	385															ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00950000183051.a.a.a #26	ENSGT00940000161408	ENSGT00390000014772.k #31	ENSGT00390000009042	ENSGT00390000014542	ENSGT00870000136537	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000158438.m	ENSGT00940000154996.a.a.b	ENSGT00940000166429
Denticle herring	MODERN SPECIES	12	rnf19a (ENSDCDG00000022843)	spag1a (ENSDCDG00000022851)	ENSDCDG00000022857	stk3 (ENSDCDG00000022869)	rida (ENSDCDG00000022879)	rpl30 (ENSDCDG00000022893)	laptm4b (ENSDCDG00000022926)	mtdha (ENSDCDG00000022929)	rrm2b (ENSDCDG00000022942)	KCNQ4 (ENSDCDG00000023841)	nfyc (ENSDCDG00000023917)	krit1 (ENSDCDG00000024108)	ENSDCDG00000024117	mcl1a (ENSDCDG00000024122)	ensab (ENSDCDG00000024123)	cndp2 (ENSDCDG00000024130) #22	ENSDCDG00000024410	s100v2 (ENSDCDG00000024417)	ENSDCDG00000024422	PPP3R1 (ENSDCDG00000024432)	pno1 (ENSDCDG00000024450)	ENSDCDG00000024486	ENSDCDG00000024500	ENSDCDG00000024516	polr3gla (ENSDCDG00000024525)	txnipa (ENSDCDG00000024536)	mtx1b (ENSDCDG00000024549)	arl4ab (ENSDCDG00000024556)	tmem106bb (ENSDCDG00000024559)	thsd7aa (ENSDCDG00000024569)	nxph1 (ENSDCDG00000024617)
Atlantic herring	MODERN SPECIES	10	ENSCHAG00000014096	slc52a2 (ENSCHAG00000014082)	ENSCHAG00000013905	nfatc1 (ENSCHAG00000013880)	atp9b (ENSCHAG00000008142) #34	sall3b (ENSCHAG00000007900) ##33	LIX1L (ENSCHAG00000007816)	ENSCHAG00000007801	tnfaip8l2a (ENSCHAG00000007782)	ENSCHAG00000007758	sema6d (ENSCHAG00000007598)	ENSCHAG00000007577	ENSCHAG00000007546	ENSCHAG00000007497	ENSCHAG00000007479	cndp2 (ENSCHAG00000007351) #22	tshz1 (ENSCHAG00000007345) #26	znf516 (ENSCHAG00000007326)	ENSCHAG00000007208 #31	prcc (ENSCHAG00000007189)	mrpl24 (ENSCHAG00000007178)	sf3b4 (ENSCHAG00000007167)	naxe (ENSCHAG00000007145)	chd4a (ENSCHAG00000002793)	cdc42l (ENSCHAG00000002415)	eno2 (ENSCHAG00000026360)	tpi1a (ENSCHAG00000026350)	gnb3b (ENSCHAG00000026346)	zgc:174904 (ENSCHAG00000026344)	ENSCHAG00000026339	GRIK5 (ENSCHAG00000026252)
Otophysi	ANCESTRAL SPECIES	260																ENSGT00940000156500 #22	ENSGT00950000183051.a.a.a #26	ENSGT00940000161408	ENSGT00390000014772.k #31	ENSGT01050000244841.A.b.a.b.a.a.i #32	ENSGT00940000159356.a.b ##33	ENSGT00940000157071 #34	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000162855.a.a.a.b	ENSGT00390000002661.b.ub.a	ENSGT00530000063880.b.e
Characiphysae	ANCESTRAL SPECIES	172																ENSGT00940000156500 #22	ENSGT00950000183051.a.a.a #26	ENSGT00940000161408	ENSGT00390000014772.k #31	ENSGT01050000244841.A.b.a.b.a.a.i #32	ENSGT00940000159356.a.b ##33	ENSGT00940000157071 #34	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000162855.a.a.a.b	ENSGT00390000002661.b.ub.a	ENSGT00530000063880.b.e
Characiphysae_b	ANCESTRAL SPECIES	17	ENSGT00390000018500.b.b.b	ENSGT00500000045044	ENSGT00940000159017.a.b	ENSGT00500000044921.a	ENSGT00510000047245	ENSGT00530000063461.A.b	ENSGT00550000074698.b	ENSGT00940000155113.a.a.b	ENSGT00940000164832.e.b	ENSGT00940000155784.C.u.b	ENSGT00940000155602	ENSGT00940000157780	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00940000166193	ENSGT00940000156500 #22	ENSGT00950000183051.a.a.a #26	ENSGT00940000161408	ENSGT00390000014772.k #31	ENSGT01050000244841.A.b.a.b.a.a.i #32	ENSGT00940000159356.a.b ##33	ENSGT00940000157071 #34	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000162855.a.a.a.b	ENSGT00390000002661.b.ub.a	ENSGT00530000063880.b.e
Characoidei	ANCESTRAL SPECIES	33	ENSGT00390000018500.b.b.b	ENSGT00500000045044	ENSGT00940000159017.a.b	ENSGT00500000044921.a	ENSGT00510000047245	ENSGT00530000063461.A.b	ENSGT00550000074698.b	ENSGT00940000155113.a.a.b	ENSGT00940000164832.e.b	ENSGT00940000155784.C.u.b	ENSGT00940000155602	ENSGT00940000157780	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00940000166193	ENSGT00940000156500 #22	ENSGT00950000183051.a.a.a #26	ENSGT00940000161408	ENSGT00390000014772.k #31	ENSGT01050000244841.A.b.a.b.a.a.i #32	ENSGT00940000159356.a.b ##33	ENSGT00940000157071 #34	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000154843.F.d	ENSGT00400000022514	ENSGT00940000162855.a.b	ENSGT00940000162855.a.a.a.b
Red-bellied piranha	MODERN SPECIES	68	mturn (ENSPNAG00000017886)	znrf2a (ENSPNAG00000017867)	ggcta (ENSPNAG00000017854)	snrpd1 (ENSPNAG00000017824)	clptm1l (ENSPNAG00000017807)	ENSPNAG00000017758	rplp1 (ENSPNAG00000017741)	PTK2 (ENSPNAG00000017725)	ENSPNAG00000017618	DENND3 (ENSPNAG00000017591)	klhl7 (ENSPNAG00000017551)	lrrc3b (ENSPNAG00000017517)	SLC45A4 (ENSPNAG00000017495)	GPR20 (ENSPNAG00000017441)	ENSPNAG00000017423	cndp2 (ENSPNAG00000017310) #22	tshz1 (ENSPNAG00000017293) #26	znf516 (ENSPNAG00000017286)	ENSPNAG00000017263 #31	GALR1 (ENSPNAG00000017178) #32	sall3b (ENSPNAG00000017141) ##33	atp9b (ENSPNAG00000017126) #34	nfatc1 (ENSPNAG00000017021)
Mexicana tetra	MODERN SPECIES	144	SH3BP5 (ENSAMXG00000039958)	mturn (ENSAMXG00000032980)	znrf2a (ENSAMXG00000035513)	ggcta (ENSAMXG00000038966)	snrpd1 (ENSAMXG00000004589)	clptm1l (ENSAMXG00000004561)	rplp1 (ENSAMXG00000029436)	PTK2 (ENSAMXG00000004491)	ENSAMXG00000031714	DENND3 (ENSAMXG00000004469)	klhl7 (ENSAMXG00000004443)	lrrc3b (ENSAMXG00000025609)	SLC45A4 (ENSAMXG00000004424)	GPR20 (ENSAMXG00000025141)	ENSAMXG00000016489	cndp2 (ENSAMXG00000043870) #22
Electric eel	MODERN SPECIES	421											DENND3 (ENSEEEG00000012230)	klhl7 (ENSEEEG00000012222)	lrrc3b (ENSEEEG00000012217)	SLC45A4 (ENSEEEG00000012048)	ENSEEEG00000012015	cndp2 (ENSEEEG00000011976) #22	tshz1 (ENSEEEG00000011966) #26
Channel catfish	MODERN SPECIES	16	SH3BP5 (ENSIPUG00000003633)	mturn (ENSIPUG00000003620)	znrf2 (ENSIPUG00000003600)	ggcta (ENSIPUG00000003587)	snrpd1 (ENSIPUG00000003576)	clptm1l (ENSIPUG00000003529)	rplp1 (ENSIPUG00000003514)	ptk2 (ENSIPUG00000003268)	ENSIPUG00000003235	ggcta (ENSIPUG00000003221)	ENSIPUG00000003213	slc45a4 (ENSIPUG00000003180)	lrrc3b (ENSIPUG00000003166)	klhl7 (ENSIPUG00000003141)	ENSIPUG00000003090	cndp2 (ENSIPUG00000003077) #22	tshz1 (ENSIPUG00000003059) #26	znf516 (ENSIPUG00000003046)	ENSIPUG00000003031 #31	GALR1 (ENSIPUG00000003021) #32	sall3b (ENSIPUG00000003006) ##33	atp9b (ENSIPUG00000002960) #34	nfatc1 (ENSIPUG00000002936)	rft2 (ENSIPUG00000002914)	SLC52A1 (ENSIPUG00000002893)	ENSIPUG00000002886	fbxl6 (ENSIPUG00000002871)	pleca (ENSIPUG00000002350)	eif3eb (ENSIPUG00000002187)	TMEM74 (ENSIPUG00000002171)	trhrb (ENSIPUG00000002162)
Cyprinoidei	ANCESTRAL SPECIES	33	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00390000004280	ENSGT00530000063609.b.x	ENSGT00530000063480.b	ENSGT00940000157121	ENSGT00390000008096.C.b	ENSGT00940000156869	ENSGT00940000154337.b	ENSGT00940000154995	ENSGT00390000006540	ENSGT00530000063631.a.k	ENSGT00390000010779.a.b.a	ENSGT00940000156500 #22	ENSGT00950000183051.a.a.a #26	ENSGT00940000161408	ENSGT00390000014772.k #31	ENSGT01050000244841.A.b.a.b.a.a.i #32	ENSGT00940000159356.a.b.b ##33	ENSGT00940000157071 #34	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00940000162855.a.b	ENSGT00940000162855.a.a.a.b	ENSGT00390000002661.b.ub.a	ENSGT00530000063880.b.e	ENSGT01100000263484.B.b.b.a.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	115	ENSGT00950000183188.B.j	ENSGT00390000004280.a	ENSGT00530000063609.b.x.q.a	ENSGT00530000063480.b.p	ENSGT00940000157121.g	ENSGT00390000008096.C.b.a	ENSGT00940000156869.i	ENSGT00390000008096.C.a.b	ENSGT00940000168259	ENSGT00940000154337.b.f	ENSGT00940000154995.fb	ENSGT00390000006540.f	ENSGT00510000047030.d.q.b	ENSGT00530000063631.a.k.b	ENSGT00390000010779.a.b.a.f	ENSGT00940000156500.e #22	ENSGT00950000183051.a.a.a.a #26	ENSGT00940000161408.a	ENSGT00390000014772.k.e #31	ENSGT01050000244841.A.b.a.b.a.a.i.a #32	ENSGT00940000159356.a.b.b.b ##33	ENSGT00940000157071.s #34	ENSGT00940000157616.j.a.b	ENSGT00390000003774.a.a.c.f	ENSGT00390000003774.b.a	ENSGT00400000024940.b	ENSGT00400000022514.d.a	ENSGT00940000162855.a.b	ENSGT00940000162855.a.a.a.b.a	ENSGT00390000002661.b.ub.a	ENSGT00530000063880.b.e.a.b
Cyprininae_a	ANCESTRAL SPECIES	52	ENSGT00950000183188.B.j	ENSGT00390000004280.a	ENSGT00530000063609.b.x.q.a	ENSGT00530000063480.b.p	ENSGT00940000157121.g	ENSGT00390000008096.C.b.a	ENSGT00940000156869.i	ENSGT00390000008096.C.a.b	ENSGT00940000168259	ENSGT00940000154337.b.f	ENSGT00940000154995.fb	ENSGT00390000006540.f	ENSGT00510000047030.d.q.b	ENSGT00530000063631.a.k.b	ENSGT00390000010779.a.b.a.f	ENSGT00940000156500.e #22	ENSGT00950000183051.a.a.a.a #26	ENSGT00940000161408.a	ENSGT00390000014772.k.e #31	ENSGT01050000244841.A.b.a.b.a.a.i.a #32	ENSGT00940000159356.a.b.b.b ##33	ENSGT00940000157071.s #34	ENSGT00940000157616.j.a.b	ENSGT00390000003774.a.a.c.f	ENSGT00390000003774.b.a	ENSGT00400000024940.b	ENSGT00400000022514.d.a	ENSGT00940000162855.a.b	ENSGT00940000162855.a.a.a.b.a	ENSGT00390000002661.a.a	ENSGT00530000063880.b.e.a.b
Common carp reference	MODERN SPECIES	12	fam221a (ENSCCRG00000037999)	tra2a (ENSCCRG00000062498)	igf2bp3 (ENSCCRG00000030227)	GPNMB (ENSCCRG00000023873)	oxnad1 (ENSCCRG00000023876)	RFTN1 (ENSCCRG00000023881)	dazl (ENSCCRG00000023883)	tbc1d5 (ENSCCRG00000023940)	satb1a (ENSCCRG00000024007)	KCNH8 (ENSCCRG00000023886)	ENSCCRG00000077868	kat2b (ENSCCRG00000069798)	ngly1 (ENSCCRG00000021036)	adnp2b (ENSCCRG00000021092)	txnl4a (ENSCCRG00000021097)	cndp2 (ENSCCRG00000020392) #22	ENSCCRG00000043638	tshz1 (ENSCCRG00000055930) #26	znf516 (ENSCCRG00000026041)	ENSCCRG00000058472 #31	GALR1 (ENSCCRG00000069851) #32	sall3b (ENSCCRG00000079531) ##33	atp9b (ENSCCRG00000040711) #34	ENSCCRG00000061462	nfatc1 (ENSCCRG00000007446)	ENSCCRG00000048113	ENSCCRG00000042066	slc52a2 (ENSCCRG00000042060)	fbxl6 (ENSCCRG00000060495)	eppk1 (ENSCCRG00000069112)	pleca (ENSCCRG00000042048)
Golden-line barbel	MODERN SPECIES	148	fam221a (ENSSGRG00000050535)	tra2a (ENSSGRG00000050536)	igf2bp3 (ENSSGRG00000050552)	ENSSGRG00000051380	GPNMB (ENSSGRG00000051381)	oxnad1 (ENSSGRG00000051382)	ENSSGRG00000051383	dazl (ENSSGRG00000051384)	tbc1d5 (ENSSGRG00000051406)	satb1a (ENSSGRG00000051505)	KCNH8 (ENSSGRG00000051506)	kat2b (ENSSGRG00000051507)	nutf2l (ENSSGRG00000051532)	adnp2b (ENSSGRG00000051534)	txnl4a (ENSSGRG00000051535)	cndp2 (ENSSGRG00000051541) #22	tshz1 (ENSSGRG00000051558) #26	znf516 (ENSSGRG00000051559)	ENSSGRG00000051562 #31	GALR1 (ENSSGRG00000051567) #32	sall3b (ENSSGRG00000051568) ##33	atp9b (ENSSGRG00000051577) #34	nfatc1 (ENSSGRG00000052172)	ENSSGRG00000052189	slc52a2 (ENSSGRG00000052190)	ENSSGRG00000052191	fbxl6 (ENSSGRG00000052195)	ENSSGRG00000052197	pleca (ENSSGRG00000052204)	EIF3E (ENSSGRG00000052518)	TMEM74 (ENSSGRG00000052743)
Goldfish	MODERN SPECIES	10	igf2bp3 (ENSCARG00000019683)	GPNMB (ENSCARG00000020368)	oxnad1 (ENSCARG00000020398)	ENSCARG00000020405	dazl (ENSCARG00000020409)	tbc1d5 (ENSCARG00000020443)	satb1a (ENSCARG00000020567)	KCNH8 (ENSCARG00000020573)	rab5aa (ENSCARG00000020626)	kat2b (ENSCARG00000020707)	ngly1 (ENSCARG00000022617)	ENSCARG00000022623	nutf2l (ENSCARG00000022627)	adnp2b (ENSCARG00000022636)	txnl4a (ENSCARG00000022641)	cndp2 (ENSCARG00000022692) #22	tshz1 (ENSCARG00000023087) #26	znf516 (ENSCARG00000023096)	ENSCARG00000023108 #31	ENSCARG00000018113	sall3b (ENSCARG00000018144) ##33	atp9b (ENSCARG00000018289) #34	slc52a2 (ENSCARG00000024178)	ENSCARG00000024190	fbxl6 (ENSCARG00000024196)	pleca (ENSCARG00000024250)	EIF3E (ENSCARG00000024940)	TMEM74 (ENSCARG00000024980)	trhrb (ENSCARG00000024988)	nudcd1 (ENSCARG00000024995)	pkhd1l1.2 (ENSCARG00000025086)
Cyprininae	ANCESTRAL SPECIES	75	ENSGT00940000154957.B.b	ENSGT00950000183188.B.i	ENSGT00390000004280.b	ENSGT00530000063609.b.x.q.b	ENSGT00530000063609.b.x.r	ENSGT00530000063480.b.o	ENSGT00940000157121.h	ENSGT00390000008096.C.b.b	ENSGT00940000156869.j	ENSGT00940000154337.b.e.a	ENSGT00940000154995.gb	ENSGT00390000006540.e	ENSGT00510000047030.d.q.a	ENSGT00530000063631.a.k.a	ENSGT00390000010779.a.b.a.e	ENSGT00940000156500.f #22	ENSGT00950000183051.a.a.a.b #26	ENSGT00940000161408.b
Cyprininae_a	ANCESTRAL SPECIES	1	ENSGT00940000154957.B.b	ENSGT00950000183188.B.i	ENSGT00390000004280.b	ENSGT00530000063609.b.x.q.b	ENSGT00530000063609.b.x.r	ENSGT00530000063480.b.o	ENSGT00940000157121.h	ENSGT00390000008096.C.b.b	ENSGT00940000156869.j	ENSGT00940000154337.b.e.a	ENSGT00940000154995.gb	ENSGT00390000006540.e	ENSGT00510000047030.d.q.a	ENSGT00530000063631.a.k.a	ENSGT00390000010779.a.b.a.e	ENSGT00940000156500.f #22	ENSGT00950000183051.a.a.a.b #26	ENSGT00940000161408.b	ENSGT00390000014772.k.f #31	ENSGT01050000244841.A.b.a.b.a.a.i.b #32	ENSGT00940000159356.a.b.b.a ##33	ENSGT00940000157071.t #34	ENSGT00940000157616.j.a.a	ENSGT00390000003774.a.a.c.e	ENSGT00390000003774.b.b	ENSGT00400000024940.a	ENSGT00400000022514.d.b	ENSGT00940000154843.F.d.a	ENSGT00940000162855.a.a.a.b.b	ENSGT00530000063880.b.e.b	ENSGT01100000263484.B.b.b.a.a.b
Golden-line barbel	MODERN SPECIES	173	fam221a (ENSSGRG00000048849)	ccdc126 (ENSSGRG00000048847)	tra2a (ENSSGRG00000048846)	igf2bp3 (ENSSGRG00000048700)	GPNMB (ENSSGRG00000048697)	oxnad1 (ENSSGRG00000048695)	dazl (ENSSGRG00000048694)	tbc1d5 (ENSSGRG00000048006)	satb1a (ENSSGRG00000047993)	KCNH8 (ENSSGRG00000047985)	kat2b (ENSSGRG00000047666)	ngly1 (ENSSGRG00000047655)	nutf2l (ENSSGRG00000047639)	adnp2b (ENSSGRG00000047638)	ENSSGRG00000047633	cndp2 (ENSSGRG00000047548) #22	tshz1 (ENSSGRG00000047545) #26	PCDH1 (ENSSGRG00000047544)
Common carp reference	MODERN SPECIES	31	igf2bp3 (ENSCCRG00000054552)	GPNMB (ENSCCRG00000041852)	oxnad1 (ENSCCRG00000032264)	ENSCCRG00000032267	ENSCCRG00000023882	dazl (ENSCCRG00000064421)	tbc1d5 (ENSCCRG00000032372)	satb1a (ENSCCRG00000041031)	KCNH8 (ENSCCRG00000041034)	rab5aa (ENSCCRG00000054440)	kat2b (ENSCCRG00000007857)	ngly1 (ENSCCRG00000020431)	nutf2l (ENSCCRG00000020425)	adnp2b (ENSCCRG00000020419)	txnl4a (ENSCCRG00000020409)	cndp2 (ENSCCRG00000021131) #22	ENSCCRG00000068758	tshz1 (ENSCCRG00000078395) #26	ENSCCRG00000067793	znf516 (ENSCCRG00000060631)	ENSCCRG00000076353 #31	GALR1 (ENSCCRG00000058396) #32	ENSCCRG00000055835	sall3b (ENSCCRG00000040618) ##33	atp9b (ENSCCRG00000079182) #34	nfatc1 (ENSCCRG00000042043)	ENSCCRG00000076741	ENSCCRG00000048111	eppk1 (ENSCCRG00000067005)	ENSCCRG00000070090	pleca (ENSCCRG00000003243)
Goldfish	MODERN SPECIES	38	tra2a (ENSCARG00000030410)	igf2bp3 (ENSCARG00000025298)	GPNMB (ENSCARG00000025004)	oxnad1 (ENSCARG00000024962)	ENSCARG00000024956	dazl (ENSCARG00000024917)	tbc1d5 (ENSCARG00000023076)	satb1a (ENSCARG00000023032)	KCNH8 (ENSCARG00000022999)	rab5aa (ENSCARG00000022987)	kat2b (ENSCARG00000022552)	ngly1 (ENSCARG00000022519)	nutf2l (ENSCARG00000022510)	adnp2b (ENSCARG00000022506)	txnl4a (ENSCARG00000022496)	cndp2 (ENSCARG00000022040) #22	tshz1 (ENSCARG00000022016) #26	znf516 (ENSCARG00000022006)	ENSCARG00000022000	ext1b (ENSCARG00000021952)	med30 (ENSCARG00000021936)	SLC30A8 (ENSCARG00000021920)	crabp2b (ENSCARG00000021900)	mrps21 (ENSCARG00000021888)	ciarta (ENSCARG00000021868)	rprd2a (ENSCARG00000021836)	celf3a (ENSCARG00000021768)	cers2a (ENSCARG00000021724)	ENSCARG00000021695	chrna11 (ENSCARG00000021663)	snx27a (ENSCARG00000020384)
Zebrafish	MODERN SPECIES	10	ENSDARG00000096834	igf2bp3 (ENSDARG00000010266)	GPNMB (ENSDARG00000062688)	oxnad1 (ENSDARG00000062664)	RFTN1 (ENSDARG00000070831)	dazl (ENSDARG00000036214)	tbc1d5 (ENSDARG00000036212)	satb1a (ENSDARG00000057649)	KCNH8 (ENSDARG00000062640)	rab5aa (ENSDARG00000018602)	kat2b (ENSDARG00000062634)	ngly1 (ENSDARG00000003205)	nutf2l (ENSDARG00000014499)	adnp2b (ENSDARG00000028431)	txnl4a (ENSDARG00000036190)	cndp2 (ENSDARG00000003931) #22	tshz1 (ENSDARG00000005026) #26	znf516 (ENSDARG00000070809)	ENSDARG00000036186 #31	ENSDARG00000111408	GALR1 (ENSDARG00000005522) #32	sall3b (ENSDARG00000057586) ##33	atp9b (ENSDARG00000062521) #34	nfatc1 (ENSDARG00000036168)	ENSDARG00000062502	slc52a2 (ENSDARG00000102035)	ENSDARG00000070800	fbxl6 (ENSDARG00000077227)	eppk1 (ENSDARG00000096359)	pleca (ENSDARG00000062590)	eif3eb (ENSDARG00000002549)
Euteleosteomorpha	ANCESTRAL SPECIES	241	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00940000161427	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00730000110871.b	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00950000183051.a.a.a #26	ENSGT00940000161408
Acanthomorphata	ANCESTRAL SPECIES	22	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00730000110871.b	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893	ENSGT00940000155549.a.a.b	ENSGT00950000183051.a.a.a #26
Cod	MODERN SPECIES	14	tent5bb (ENSGMOG00000018930)	ENSGMOG00000023083	tbxta (ENSGMOG00000018941)	nudc (ENSGMOG00000018951)	ENSGMOG00000032484	tpbga (ENSGMOG00000035490)	ENSGMOG00000000239	paqr7a (ENSGMOG00000018974)	ENSGMOG00000000042	ENSGMOG00000007115	ENSGMOG00000007209	ENSGMOG00000007262	ENSGMOG00000011366	ENSGMOG00000011329	ENSGMOG00000027353	ENSGMOG00000001186 #22	ENSGMOG00000023867	ENSGMOG00000001340	ENSGMOG00000029940	ENSGMOG00000013833	zgc:63863 (ENSGMOG00000009822)	ENSGMOG00000036473	dgat1a (ENSGMOG00000016836)	cfap20 (ENSGMOG00000016832)	ENSGMOG00000029829	ENSGMOG00000034931	ENSGMOG00000016795	ENSGMOG00000022786	ENSGMOG00000031213	ENSGMOG00000003124	ENSGMOG00000007072
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00730000110871.b	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893	ENSGT00940000155549.a.a.b	ENSGT00950000183051.a.a.a #26
Pinecone sodierfish	MODERN SPECIES	2	tmem79a (ENSMMDG00005002190)	mef2d (ENSMMDG00005002194)	mrpl24 (ENSMMDG00005002203)	HDGF (ENSMMDG00005002206)	prcc (ENSMMDG00005002207)	mrpl9 (ENSMMDG00005002209)	si:dkey-266f7.9 (ENSMMDG00005002211)	rpz2 (ENSMMDG00005002213)	krit1 (ENSMMDG00005002223)	cyp51 (ENSMMDG00005002249)	ENSMMDG00005002335	ENSMMDG00005002340	MTERF1 (ENSMMDG00005002342)	dus3l (ENSMMDG00005002348)	ENSMMDG00005002398	cndp2 (ENSMMDG00005002406) #22	RECQL4 (ENSMMDG00005002687)	ENSMMDG00005002714	SCRT1 (ENSMMDG00005002733)	zgc:63863 (ENSMMDG00005002744)	dgat1a (ENSMMDG00005002759)	cfap20 (ENSMMDG00005002784)	SLC45A4 (ENSMMDG00005002814)	DENND3 (ENSMMDG00005002895)	PTK2 (ENSMMDG00005003089)	rplp1 (ENSMMDG00005003107)	clptm1l (ENSMMDG00005003160)	trps1 (ENSMMDG00005003403)	CSMD3 (ENSMMDG00005003424)	tshz1 (ENSMMDG00005004041) #26	znf516 (ENSMMDG00005004049)
Percomorphaceae	ANCESTRAL SPECIES	10	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00730000110871.b	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893	ENSGT00940000155549.a.a.b	ENSGT00950000183051.a.a.a #26
Tiger tail seahorse	MODERN SPECIES	99	ENSHCOG00000015631	ENSHCOG00000015638	ENSHCOG00000015654	trps1 (ENSHCOG00000015687)	clptm1l (ENSHCOG00000015698)	rplp1 (ENSHCOG00000015713)	PTK2 (ENSHCOG00000015835)	si:dkey-266f7.9 (ENSHCOG00000015848)	rpz2 (ENSHCOG00000000442)	krit1 (ENSHCOG00000015896)	cyp51 (ENSHCOG00000015902)	ENSHCOG00000016056	MTERF1 (ENSHCOG00000016064)	dus3l (ENSHCOG00000016072)	ENSHCOG00000016129	cndp2 (ENSHCOG00000016143) #22	RECQL4 (ENSHCOG00000016157)	ENSHCOG00000016163	SCRT1 (ENSHCOG00000016179)	zgc:63863 (ENSHCOG00000016208)	dgat1a (ENSHCOG00000016223)	ENSHCOG00000016279	polr2k (ENSHCOG00000016287)	spag1a (ENSHCOG00000016309)	ENSHCOG00000016329	osbpl3a (ENSHCOG00000016386)	TRIL (ENSHCOG00000016402)	ENSHCOG00000016476	ENSHCOG00000016502	jazf1a (ENSHCOG00000016517)	tax1bp1a (ENSHCOG00000016543)
Percomorphaceae_B	ANCESTRAL SPECIES	15	ENSGT00390000014542	ENSGT00940000177924	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00730000110871.b	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893
Ovalentaria	ANCESTRAL SPECIES	12	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000177924	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893
Ovalentaria_B	ANCESTRAL SPECIES	15	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893
Pomacentridae	ANCESTRAL SPECIES	7	ENSGT00390000002390.b.f	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893
Pomacentridae_A	ANCESTRAL SPECIES	99	ENSGT00390000002390.b.f	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c.j	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554.r	ENSGT00390000004554.q	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893
Amphiprion	ANCESTRAL SPECIES	186												ENSGT00950000183155.a.b.a.a.b.c.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c.j	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554.r	ENSGT00390000004554.q	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893
Clown anemonefish	MODERN SPECIES	2638												ENSAOCG00000004358	MTERF1 (ENSAOCG00000004345)	dus3l (ENSAOCG00000004343)	ENSAOCG00000004317	cndp2 (ENSAOCG00000004280) #22	ENSAOCG00000004254	ENSAOCG00000004233
Orange clownfish	MODERN SPECIES	8	ENSAPEG00000007412	mef2d (ENSAPEG00000007314)	ENSAPEG00000007273	ENSAPEG00000007224	RPS19 (ENSAPEG00000007172)	ENSAPEG00000006103	ENSAPEG00000005977	ENSAPEG00000005961	ndufv1 (ENSAPEG00000005934)	ENSAPEG00000005917	ENSAPEG00000005907	ENSAPEG00000005888	MTERF1 (ENSAPEG00000005877)	dus3l (ENSAPEG00000005828)	ENSAPEG00000005796	cndp2 (ENSAPEG00000005779) #22	ENSAPEG00000005709	ENSAPEG00000005691	SCRT1 (ENSAPEG00000005677)	KLHL10 (ENSAPEG00000005598)	zgc:63863 (ENSAPEG00000005579)	dgat1a (ENSAPEG00000005517)	cfap20 (ENSAPEG00000005503)	cfap20 (ENSAPEG00000005472)	GPR20 (ENSAPEG00000005428)	SLC45A4 (ENSAPEG00000005346)	DENND3 (ENSAPEG00000005252)	PTK2 (ENSAPEG00000005023)	rplp1 (ENSAPEG00000004985)	clptm1l (ENSAPEG00000004913)	trps1 (ENSAPEG00000004813)
Spiny chromis	MODERN SPECIES	2491														dus3l (ENSAPOG00000016764)	ENSAPOG00000016822	cndp2 (ENSAPOG00000016834) #22	RECQL4 (ENSAPOG00000016945)	slc39a4 (ENSAPOG00000016965)
Bicolor damselfish	MODERN SPECIES	1850															ENSSPAG00000006941	cndp2 (ENSSPAG00000006884) #22	RECQL4 (ENSSPAG00000006827)	slc39a4 (ENSSPAG00000006805)	ENSSPAG00000006796	SCRT1 (ENSSPAG00000006788)
Cichlidae	ANCESTRAL SPECIES	7	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893
Pseudocrenilabrinae	DUPLICATION
Pseudocrenilabrinae	ANCESTRAL SPECIES	12	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500.g #22	ENSGT00940000156500.h.a #22	ENSGT00940000156500.h.b #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c.e	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	9	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500.g #22	ENSGT00940000156500.h.a #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c.e	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b
Haplochromini	ANCESTRAL SPECIES	5	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500.g #22	ENSGT00940000156500.h.a.b.a.a #22	ENSGT00940000156500.h.b #22	ENSGT00940000156500.h.a.a #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c.e	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a
Haplochromini_A	ANCESTRAL SPECIES	5	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500.g #22	ENSGT00940000156500.h.a.b.a.a #22	ENSGT00940000156500.h.b #22	ENSGT01100000263483.E.a.c.a.b.a.b	ENSGT00940000156500.h.a.b.a.b.b #22	ENSGT00940000156500.h.a.a #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c.e.c	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b
Haplochromini_B	ANCESTRAL SPECIES	1	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500.g #22	ENSGT00940000156500.h.a.b.a.a #22	ENSGT00940000156500.h.b #22	ENSGT01100000263483.E.a.c.a.b.a.b	ENSGT00940000156500.h.a.a #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c.e.c.a.a	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a
Eastern happy	MODERN SPECIES	13	s100s (ENSACLG00000010756)	ENSACLG00000010771	mrpl24 (ENSACLG00000010827)	HDGF (ENSACLG00000010863)	prcc (ENSACLG00000010880)	mrpl9 (ENSACLG00000010920)	ENSACLG00000010934	si:dkey-266f7.9 (ENSACLG00000010962)	rpz2 (ENSACLG00000010988)	krit1 (ENSACLG00000010998)	cyp51 (ENSACLG00000011052)	ENSACLG00000011385	MTERF1 (ENSACLG00000011571)	dus3l (ENSACLG00000011576)	ENSACLG00000011617	cndp2 (ENSACLG00000011631) #22	cndp2 (ENSACLG00000011738) #22	cndp2 (ENSACLG00000011770) #22	ENSACLG00000011804	cndp2 (ENSACLG00000011810) #22	ENSACLG00000011982	ENSACLG00000012028	SCRT1 (ENSACLG00000012046)	KLHL10 (ENSACLG00000012065)	KLHL10 (ENSACLG00000012119)	zgc:63863 (ENSACLG00000012165)	dgat1a (ENSACLG00000012220)	cfap20 (ENSACLG00000012271)	ENSACLG00000012293	SLC45A4 (ENSACLG00000012397)	DENND3 (ENSACLG00000012420)
Zebra mbuna	MODERN SPECIES	1104	ENSMZEG00005026622	mrpl24 (ENSMZEG00005026624)	HDGF (ENSMZEG00005026627)	prcc (ENSMZEG00005026630)	mrpl9 (ENSMZEG00005026632)	ENSMZEG00005026634	si:dkey-266f7.9 (ENSMZEG00005026636)	rpz2 (ENSMZEG00005026638)	krit1 (ENSMZEG00005026640)	cyp51 (ENSMZEG00005026642)	ENSMZEG00005026646	ENSMZEG00005026656	MTERF1 (ENSMZEG00005026659)	dus3l (ENSMZEG00005026661)	ENSMZEG00005026664	cndp2 (ENSMZEG00005026666) #22	ENSMZEG00005026670	cndp2 (ENSMZEG00005026671) #22	cndp2 (ENSMZEG00005026679) #22	ENSMZEG00005026691	cndp2 (ENSMZEG00005026696) #22	RECQL4 (ENSMZEG00005026699)	ENSMZEG00005026701	ENSMZEG00005026702	KLHL10 (ENSMZEG00005026703)	KLHL10 (ENSMZEG00005026704)	zgc:63863 (ENSMZEG00005026705)	dgat1a (ENSMZEG00005026706)	cfap20 (ENSMZEG00005026708)	ENSMZEG00005026709	SLC45A4 (ENSMZEG00005026711)
Lyretail cichlid	MODERN SPECIES	302	ENSNBRG00000015538	ENSNBRG00000015530	mef2d (ENSNBRG00000015507)	ENSNBRG00000015386	ENSNBRG00000015365	prcc (ENSNBRG00000015303)	mrpl9 (ENSNBRG00000015276)	si:dkey-266f7.9 (ENSNBRG00000015259)	krit1 (ENSNBRG00000015215)	cyp51 (ENSNBRG00000015178)	ENSNBRG00000015077	ENSNBRG00000015055	dus3l (ENSNBRG00000015011)	ENSNBRG00000014968	ENSNBRG00000014962	cndp2 (ENSNBRG00000014933) #22	slc39a4 (ENSNBRG00000014915)	ENSNBRG00000014895	SCRT1 (ENSNBRG00000014882)	KLHL10 (ENSNBRG00000014863)	zgc:63863 (ENSNBRG00000014838)	dgat1a (ENSNBRG00000014736)	cfap20 (ENSNBRG00000014678)	GPR20 (ENSNBRG00000014662)	SLC45A4 (ENSNBRG00000014628)	ENSNBRG00000014566	ENSNBRG00000014525	ENSNBRG00000014497	ENSNBRG00000014483	ENSNBRG00000014464	rplp1 (ENSNBRG00000014452)
Nile tilapia	MODERN SPECIES	13	ENSONIG00000019771	mrpl24 (ENSONIG00000019772)	ENSONIG00000028554	ENSONIG00000031957	prcc (ENSONIG00000033561)	mrpl9 (ENSONIG00000030963)	ENSONIG00000043075	si:dkey-266f7.9 (ENSONIG00000019781)	rpz2 (ENSONIG00000020796)	krit1 (ENSONIG00000019783)	cyp51 (ENSONIG00000019785)	ENSONIG00000019787	MTERF1 (ENSONIG00000019792)	dus3l (ENSONIG00000019793)	ENSONIG00000041402	cndp2 (ENSONIG00000019796) #22	cndp2 (ENSONIG00000034035) #22	cndp2 (ENSONIG00000036243) #22	RECQL4 (ENSONIG00000019801)	ENSONIG00000019806	ENSONIG00000031414	SCRT1 (ENSONIG00000019809)	ENSONIG00000037409	ENSONIG00000042862	ENSONIG00000030309	ENSONIG00000038713	zgc:63863 (ENSONIG00000002857)	dgat1a (ENSONIG00000002849)	cfap20 (ENSONIG00000002845)	GPR20 (ENSONIG00000037263)	SLC45A4 (ENSONIG00000002838)
Pseudocrenilabrinae	DUPLICATION
Pseudocrenilabrinae	ANCESTRAL SPECIES	12	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500.g #22	ENSGT00940000156500.h.a #22	ENSGT00940000156500.h.b #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c.e	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	9	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500.g #22	ENSGT00940000156500.h.a #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c.e	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893
Haplochromini	DUPLICATION
Haplochromini	ANCESTRAL SPECIES	5	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500.g #22	ENSGT00940000156500.h.a.b.a.a #22	ENSGT00940000156500.h.b #22	ENSGT00940000156500.h.a.a #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c.e	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893
Burton s mouthbrooder	MODERN SPECIES	831												ENSHBUG00000018873	ENSHBUG00000018890 #22	cndp2 (ENSHBUG00000018912) #22	cndp2 (ENSHBUG00000018940) #22	cndp2 (ENSHBUG00000019065) #22	ENSHBUG00000019085	ENSHBUG00000019094	SCRT1 (ENSHBUG00000019101)	zgc:63863 (ENSHBUG00000000563)	cfap20 (ENSHBUG00000019132)	dgat1a (ENSHBUG00000019156)	SLC45A4 (ENSHBUG00000019168)
Haplochromini_A	ANCESTRAL SPECIES	5	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500.g #22	ENSGT00940000156500.h.a.b.a.a #22	ENSGT00940000156500.h.b #22	ENSGT01100000263483.E.a.c.a.b.a.b	ENSGT00940000156500.h.a.b.a.b.b #22	ENSGT00940000156500.h.a.a #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c.e.c	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893
Haplochromini_B	ANCESTRAL SPECIES	1	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500.g #22	ENSGT00940000156500.h.a.b.a.a #22	ENSGT00940000156500.h.b #22	ENSGT01100000263483.E.a.c.a.b.a.b	ENSGT00940000156500.h.a.a #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c.e.c.a.a	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893	ENSGT00940000155549.a.a.b
Zebra mbuna	MODERN SPECIES	1104	ENSMZEG00005026634	si:dkey-266f7.9 (ENSMZEG00005026636)	rpz2 (ENSMZEG00005026638)	krit1 (ENSMZEG00005026640)	cyp51 (ENSMZEG00005026642)	ENSMZEG00005026646	ENSMZEG00005026656	MTERF1 (ENSMZEG00005026659)	dus3l (ENSMZEG00005026661)	ENSMZEG00005026664	cndp2 (ENSMZEG00005026666) #22	ENSMZEG00005026670	cndp2 (ENSMZEG00005026671) #22	cndp2 (ENSMZEG00005026679) #22	ENSMZEG00005026691	cndp2 (ENSMZEG00005026696) #22	RECQL4 (ENSMZEG00005026699)	ENSMZEG00005026701	ENSMZEG00005026702	KLHL10 (ENSMZEG00005026703)	KLHL10 (ENSMZEG00005026704)	zgc:63863 (ENSMZEG00005026705)	dgat1a (ENSMZEG00005026706)	cfap20 (ENSMZEG00005026708)	ENSMZEG00005026709	SLC45A4 (ENSMZEG00005026711)	DENND3 (ENSMZEG00005026714)	PTK2 (ENSMZEG00005026719)	rplp1 (ENSMZEG00005026720)	clptm1l (ENSMZEG00005026722)	trps1 (ENSMZEG00005026723)
Haplochromini	DUPLICATION
Haplochromini	DUPLICATION
Haplochromini	ANCESTRAL SPECIES	5	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500.g #22	ENSGT00940000156500.h.a.b.a.a #22	ENSGT00940000156500.h.b #22	ENSGT00940000156500.h.a.a #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c.e	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698
Haplochromini_A	ANCESTRAL SPECIES	5	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500.g #22	ENSGT00940000156500.h.a.b.a.a #22	ENSGT00940000156500.h.b #22	ENSGT01100000263483.E.a.c.a.b.a.b	ENSGT00940000156500.h.a.b.a.b.b #22	ENSGT00940000156500.h.a.a #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c.e.c	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b
Haplochromini_B	ANCESTRAL SPECIES	1	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500.g #22	ENSGT00940000156500.h.a.b.a.a #22	ENSGT00940000156500.h.b #22	ENSGT01100000263483.E.a.c.a.b.a.b	ENSGT00940000156500.h.a.a #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c.e.c.a.a	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698
Zebra mbuna	MODERN SPECIES	1104	HDGF (ENSMZEG00005026627)	prcc (ENSMZEG00005026630)	mrpl9 (ENSMZEG00005026632)	ENSMZEG00005026634	si:dkey-266f7.9 (ENSMZEG00005026636)	rpz2 (ENSMZEG00005026638)	krit1 (ENSMZEG00005026640)	cyp51 (ENSMZEG00005026642)	ENSMZEG00005026646	ENSMZEG00005026656	MTERF1 (ENSMZEG00005026659)	dus3l (ENSMZEG00005026661)	ENSMZEG00005026664	cndp2 (ENSMZEG00005026666) #22	ENSMZEG00005026670	cndp2 (ENSMZEG00005026671) #22	cndp2 (ENSMZEG00005026679) #22	ENSMZEG00005026691	cndp2 (ENSMZEG00005026696) #22	RECQL4 (ENSMZEG00005026699)	ENSMZEG00005026701	ENSMZEG00005026702	KLHL10 (ENSMZEG00005026703)	KLHL10 (ENSMZEG00005026704)	zgc:63863 (ENSMZEG00005026705)	dgat1a (ENSMZEG00005026706)	cfap20 (ENSMZEG00005026708)	ENSMZEG00005026709	SLC45A4 (ENSMZEG00005026711)	DENND3 (ENSMZEG00005026714)	PTK2 (ENSMZEG00005026719)
Eastern happy	MODERN SPECIES	13	ENSACLG00000010771	mrpl24 (ENSACLG00000010827)	HDGF (ENSACLG00000010863)	prcc (ENSACLG00000010880)	mrpl9 (ENSACLG00000010920)	ENSACLG00000010934	si:dkey-266f7.9 (ENSACLG00000010962)	rpz2 (ENSACLG00000010988)	krit1 (ENSACLG00000010998)	cyp51 (ENSACLG00000011052)	ENSACLG00000011385	MTERF1 (ENSACLG00000011571)	dus3l (ENSACLG00000011576)	ENSACLG00000011617	cndp2 (ENSACLG00000011631) #22	cndp2 (ENSACLG00000011738) #22	cndp2 (ENSACLG00000011770) #22	ENSACLG00000011804	cndp2 (ENSACLG00000011810) #22	ENSACLG00000011982	ENSACLG00000012028	SCRT1 (ENSACLG00000012046)	KLHL10 (ENSACLG00000012065)	KLHL10 (ENSACLG00000012119)	zgc:63863 (ENSACLG00000012165)	dgat1a (ENSACLG00000012220)	cfap20 (ENSACLG00000012271)	ENSACLG00000012293	SLC45A4 (ENSACLG00000012397)	DENND3 (ENSACLG00000012420)	PTK2 (ENSACLG00000012512)
Haplochromini	DUPLICATION
Haplochromini	ANCESTRAL SPECIES																	ENSGT00940000156500.h.a.b.a.b.a #22
Burton s mouthbrooder	DUPLICATION
Burton s mouthbrooder	DUPLICATION
Burton s mouthbrooder	MODERN SPECIES	831														ENSHBUG00000018873	ENSHBUG00000018890 #22	cndp2 (ENSHBUG00000018912) #22	cndp2 (ENSHBUG00000018940) #22	cndp2 (ENSHBUG00000019065) #22	ENSHBUG00000019085	ENSHBUG00000019094	SCRT1 (ENSHBUG00000019101)	zgc:63863 (ENSHBUG00000000563)	cfap20 (ENSHBUG00000019132)	dgat1a (ENSHBUG00000019156)	SLC45A4 (ENSHBUG00000019168)
Burton s mouthbrooder	MODERN SPECIES	831													ENSHBUG00000018873	ENSHBUG00000018890 #22	cndp2 (ENSHBUG00000018912) #22	cndp2 (ENSHBUG00000018940) #22	cndp2 (ENSHBUG00000019065) #22	ENSHBUG00000019085	ENSHBUG00000019094	SCRT1 (ENSHBUG00000019101)	zgc:63863 (ENSHBUG00000000563)	cfap20 (ENSHBUG00000019132)	dgat1a (ENSHBUG00000019156)	SLC45A4 (ENSHBUG00000019168)
Burton s mouthbrooder	MODERN SPECIES	831															ENSHBUG00000018873	ENSHBUG00000018890 #22	cndp2 (ENSHBUG00000018912) #22	cndp2 (ENSHBUG00000018940) #22	cndp2 (ENSHBUG00000019065) #22	ENSHBUG00000019085	ENSHBUG00000019094	SCRT1 (ENSHBUG00000019101)	zgc:63863 (ENSHBUG00000000563)	cfap20 (ENSHBUG00000019132)	dgat1a (ENSHBUG00000019156)	SLC45A4 (ENSHBUG00000019168)
Haplochromini	ANCESTRAL SPECIES																	ENSGT00940000156500.h.a.b.a.b.b #22
Haplochromini_A	ANCESTRAL SPECIES	5	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500.g #22	ENSGT00940000156500.h.a.b.a.a #22	ENSGT00940000156500.h.b #22	ENSGT01100000263483.E.a.c.a.b.a.b	ENSGT00940000156500.h.a.b.a.b.b #22	ENSGT00940000156500.h.a.a #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c.e.c	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b
P. nyererei	DUPLICATION
P. nyererei	MODERN SPECIES	1271																cndp2 (ENSPNYG00000023872) #22
P. nyererei	MODERN SPECIES	397	mef2d (ENSPNYG00000009684)	ENSPNYG00000009488	mrpl24 (ENSPNYG00000009437)	ENSPNYG00000009424	prcc (ENSPNYG00000009406)	mrpl9 (ENSPNYG00000009390)	si:dkey-266f7.9 (ENSPNYG00000009370)	rpz2 (ENSPNYG00000009356)	krit1 (ENSPNYG00000009295)	cyp51 (ENSPNYG00000009266)	ENSPNYG00000009166	ENSPNYG00000009128	MTERF1 (ENSPNYG00000009120)	dus3l (ENSPNYG00000009052)	ENSPNYG00000009009	cndp2 (ENSPNYG00000008985) #22	RECQL4 (ENSPNYG00000008927)	slc39a4 (ENSPNYG00000008901)	ENSPNYG00000008881	SCRT1 (ENSPNYG00000008865)	zgc:63863 (ENSPNYG00000008848)	dgat1a (ENSPNYG00000008671)	cfap20 (ENSPNYG00000008620)	ENSPNYG00000008599	SLC45A4 (ENSPNYG00000008580)	DENND3 (ENSPNYG00000008490)
Burton s mouthbrooder	MODERN SPECIES	357	mef2d (ENSHBUG00000021492)	ENSHBUG00000021524	HDGF (ENSHBUG00000021552)	prcc (ENSHBUG00000000809)	mrpl9 (ENSHBUG00000021568)	ENSHBUG00000021576	si:dkey-266f7.9 (ENSHBUG00000021607)	rpz2 (ENSHBUG00000000669)	krit1 (ENSHBUG00000021657)	cyp51 (ENSHBUG00000021964)	ENSHBUG00000022152	ENSHBUG00000022204	MTERF1 (ENSHBUG00000022218)	dus3l (ENSHBUG00000022232)	ENSHBUG00000022271	ENSHBUG00000022294 #22
Haplochromini	ANCESTRAL SPECIES																	ENSGT00940000156500.h.a.b.b #22
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00940000156500.h.a.b.b #22
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT00940000156500.h.a.b.b #22
Eastern happy	MODERN SPECIES	13	prcc (ENSACLG00000010880)	mrpl9 (ENSACLG00000010920)	ENSACLG00000010934	si:dkey-266f7.9 (ENSACLG00000010962)	rpz2 (ENSACLG00000010988)	krit1 (ENSACLG00000010998)	cyp51 (ENSACLG00000011052)	ENSACLG00000011385	MTERF1 (ENSACLG00000011571)	dus3l (ENSACLG00000011576)	ENSACLG00000011617	cndp2 (ENSACLG00000011631) #22	cndp2 (ENSACLG00000011738) #22	cndp2 (ENSACLG00000011770) #22	ENSACLG00000011804	cndp2 (ENSACLG00000011810) #22	ENSACLG00000011982	ENSACLG00000012028	SCRT1 (ENSACLG00000012046)	KLHL10 (ENSACLG00000012065)	KLHL10 (ENSACLG00000012119)	zgc:63863 (ENSACLG00000012165)	dgat1a (ENSACLG00000012220)	cfap20 (ENSACLG00000012271)	ENSACLG00000012293	SLC45A4 (ENSACLG00000012397)	DENND3 (ENSACLG00000012420)	PTK2 (ENSACLG00000012512)	rplp1 (ENSACLG00000012690)	clptm1l (ENSACLG00000012698)	trps1 (ENSACLG00000013131)
Nile tilapia	MODERN SPECIES	13	mrpl24 (ENSONIG00000019772)	ENSONIG00000028554	ENSONIG00000031957	prcc (ENSONIG00000033561)	mrpl9 (ENSONIG00000030963)	ENSONIG00000043075	si:dkey-266f7.9 (ENSONIG00000019781)	rpz2 (ENSONIG00000020796)	krit1 (ENSONIG00000019783)	cyp51 (ENSONIG00000019785)	ENSONIG00000019787	MTERF1 (ENSONIG00000019792)	dus3l (ENSONIG00000019793)	ENSONIG00000041402	cndp2 (ENSONIG00000019796) #22	cndp2 (ENSONIG00000034035) #22	cndp2 (ENSONIG00000036243) #22	RECQL4 (ENSONIG00000019801)	ENSONIG00000019806	ENSONIG00000031414	SCRT1 (ENSONIG00000019809)	ENSONIG00000037409	ENSONIG00000042862	ENSONIG00000030309	ENSONIG00000038713	zgc:63863 (ENSONIG00000002857)	dgat1a (ENSONIG00000002849)	cfap20 (ENSONIG00000002845)	GPR20 (ENSONIG00000037263)	SLC45A4 (ENSONIG00000002838)	DENND3 (ENSONIG00000002833)
Pseudocrenilabrinae	ANCESTRAL SPECIES	12	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500.g #22	ENSGT00940000156500.h.a #22	ENSGT00940000156500.h.b #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c.e	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893
Pseudocrenilabrinae_A	ANCESTRAL SPECIES																	ENSGT00940000156500.h.b #22
Haplochromini	ANCESTRAL SPECIES	5	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500.g #22	ENSGT00940000156500.h.a.b.a.a #22	ENSGT00940000156500.h.b #22	ENSGT00940000156500.h.a.a #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c.e	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b
Haplochromini_A	ANCESTRAL SPECIES	5	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500.g #22	ENSGT00940000156500.h.a.b.a.a #22	ENSGT00940000156500.h.b #22	ENSGT01100000263483.E.a.c.a.b.a.b	ENSGT00940000156500.h.a.b.a.b.b #22	ENSGT00940000156500.h.a.a #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c.e.c	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a
P. nyererei	MODERN SPECIES	1221																cndp2 (ENSPNYG00000023742) #22	ENSPNYG00000023743
Haplochromini_B	ANCESTRAL SPECIES	1	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500.g #22	ENSGT00940000156500.h.a.b.a.a #22	ENSGT00940000156500.h.b #22	ENSGT01100000263483.E.a.c.a.b.a.b	ENSGT00940000156500.h.a.a #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c.e.c.a.a	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b
Eastern happy	MODERN SPECIES	13	mrpl24 (ENSACLG00000010827)	HDGF (ENSACLG00000010863)	prcc (ENSACLG00000010880)	mrpl9 (ENSACLG00000010920)	ENSACLG00000010934	si:dkey-266f7.9 (ENSACLG00000010962)	rpz2 (ENSACLG00000010988)	krit1 (ENSACLG00000010998)	cyp51 (ENSACLG00000011052)	ENSACLG00000011385	MTERF1 (ENSACLG00000011571)	dus3l (ENSACLG00000011576)	ENSACLG00000011617	cndp2 (ENSACLG00000011631) #22	cndp2 (ENSACLG00000011738) #22	cndp2 (ENSACLG00000011770) #22	ENSACLG00000011804	cndp2 (ENSACLG00000011810) #22	ENSACLG00000011982	ENSACLG00000012028	SCRT1 (ENSACLG00000012046)	KLHL10 (ENSACLG00000012065)	KLHL10 (ENSACLG00000012119)	zgc:63863 (ENSACLG00000012165)	dgat1a (ENSACLG00000012220)	cfap20 (ENSACLG00000012271)	ENSACLG00000012293	SLC45A4 (ENSACLG00000012397)	DENND3 (ENSACLG00000012420)	PTK2 (ENSACLG00000012512)	rplp1 (ENSACLG00000012690)
Zebra mbuna	MODERN SPECIES	1104	prcc (ENSMZEG00005026630)	mrpl9 (ENSMZEG00005026632)	ENSMZEG00005026634	si:dkey-266f7.9 (ENSMZEG00005026636)	rpz2 (ENSMZEG00005026638)	krit1 (ENSMZEG00005026640)	cyp51 (ENSMZEG00005026642)	ENSMZEG00005026646	ENSMZEG00005026656	MTERF1 (ENSMZEG00005026659)	dus3l (ENSMZEG00005026661)	ENSMZEG00005026664	cndp2 (ENSMZEG00005026666) #22	ENSMZEG00005026670	cndp2 (ENSMZEG00005026671) #22	cndp2 (ENSMZEG00005026679) #22	ENSMZEG00005026691	cndp2 (ENSMZEG00005026696) #22	RECQL4 (ENSMZEG00005026699)	ENSMZEG00005026701	ENSMZEG00005026702	KLHL10 (ENSMZEG00005026703)	KLHL10 (ENSMZEG00005026704)	zgc:63863 (ENSMZEG00005026705)	dgat1a (ENSMZEG00005026706)	cfap20 (ENSMZEG00005026708)	ENSMZEG00005026709	SLC45A4 (ENSMZEG00005026711)	DENND3 (ENSMZEG00005026714)	PTK2 (ENSMZEG00005026719)	rplp1 (ENSMZEG00005026720)
Nile tilapia	MODERN SPECIES	13	ENSONIG00000028554	ENSONIG00000031957	prcc (ENSONIG00000033561)	mrpl9 (ENSONIG00000030963)	ENSONIG00000043075	si:dkey-266f7.9 (ENSONIG00000019781)	rpz2 (ENSONIG00000020796)	krit1 (ENSONIG00000019783)	cyp51 (ENSONIG00000019785)	ENSONIG00000019787	MTERF1 (ENSONIG00000019792)	dus3l (ENSONIG00000019793)	ENSONIG00000041402	cndp2 (ENSONIG00000019796) #22	cndp2 (ENSONIG00000034035) #22	cndp2 (ENSONIG00000036243) #22	RECQL4 (ENSONIG00000019801)	ENSONIG00000019806	ENSONIG00000031414	SCRT1 (ENSONIG00000019809)	ENSONIG00000037409	ENSONIG00000042862	ENSONIG00000030309	ENSONIG00000038713	zgc:63863 (ENSONIG00000002857)	dgat1a (ENSONIG00000002849)	cfap20 (ENSONIG00000002845)	GPR20 (ENSONIG00000037263)	SLC45A4 (ENSONIG00000002838)	DENND3 (ENSONIG00000002833)	PTK2 (ENSONIG00000002815)
Midas cichlid	MODERN SPECIES	1525															ENSACIG00000023555	cndp2 (ENSACIG00000023473) #22
Atherinomorphae	ANCESTRAL SPECIES	12	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000177924	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b.h	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893	ENSGT00940000155549.a.a.b
Cyprinodontiformes	ANCESTRAL SPECIES	10	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000177924	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b.h	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893	ENSGT00940000155549.a.a.b
Aplocheiloidei	ANCESTRAL SPECIES	9	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485.`b	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b.h	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893	ENSGT00940000155549.a.a.b
Mangrove rivulus	MODERN SPECIES	2	mef2d (ENSKMAG00000010472)	ENSKMAG00000010359	mrpl24 (ENSKMAG00000010337)	HDGF (ENSKMAG00000010315)	prcc (ENSKMAG00000010290)	mrpl9 (ENSKMAG00000010267)	ENSKMAG00000010253	si:dkey-266f7.9 (ENSKMAG00000010239)	rpz2 (ENSKMAG00000010231)	krit1 (ENSKMAG00000010171)	cyp51 (ENSKMAG00000010014)	ENSKMAG00000009757	MTERF1 (ENSKMAG00000009695)	dus3l (ENSKMAG00000009675)	ENSKMAG00000009653	cndp2 (ENSKMAG00000009618) #22	ENSKMAG00000009537	ENSKMAG00000009503	ENSKMAG00000009489	KLHL10 (ENSKMAG00000009467)	zgc:63863 (ENSKMAG00000009431)	dgat1a (ENSKMAG00000009340)	cfap20 (ENSKMAG00000009297)	cfap20 (ENSKMAG00000009263)	SLC45A4 (ENSKMAG00000009242)	DENND3 (ENSKMAG00000009201)	PTK2 (ENSKMAG00000009027)	rplp1 (ENSKMAG00000008998)	clptm1l (ENSKMAG00000008913)	trps1 (ENSKMAG00000008869)	CSMD3 (ENSKMAG00000008620)
Turquoise killifish	MODERN SPECIES	1628	MEF2D (ENSNFUG00015022324)	mrpl24 (ENSNFUG00015022310)	ENSNFUG00015022308	ENSNFUG00015022306	PRCC (ENSNFUG00015022302)	MRPL9 (ENSNFUG00015022295)	Nfu_g_1_004159 (ENSNFUG00015022293)	RPZ2 (ENSNFUG00015022292)	KRIT1 (ENSNFUG00015022280)	cyp51 (ENSNFUG00015022236)	ENSNFUG00015022173	ENSNFUG00015022167	MTERF1 (ENSNFUG00015022166)	dus3l (ENSNFUG00015021851)	ENSNFUG00015021838	cndp2 (ENSNFUG00015021804) #22	RECQL4 (ENSNFUG00015021784)	SLC39A4 (ENSNFUG00015021780)	ENSNFUG00015021778	SCRT1 (ENSNFUG00015021772)	Nfu_g_1_004128 (ENSNFUG00015021764)	DGAT1A (ENSNFUG00015021711)	ENSNFUG00015021704	ENSNFUG00015021692	SLC45A4 (ENSNFUG00015021684)	DENND3 (ENSNFUG00015021646)	ENSNFUG00015021639	PTK2 (ENSNFUG00015020854)	cks1b (ENSNFUG00015020789)	EFNA3A (ENSNFUG00015020786)	efna1a (ENSNFUG00015020784)
Cyprinodontoidei	DUPLICATION
Cyprinodontoidei	ANCESTRAL SPECIES	11	ENSGT00390000014542	ENSGT00940000177924	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b.h	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500.j #22	ENSGT00940000156500.i #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893	ENSGT00940000155549.a.a.b	ENSGT00950000183051.a.a.a #26
Poeciliinae	ANCESTRAL SPECIES	18	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b.h	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000156500.j #22	ENSGT00940000156500.i #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893	ENSGT00940000155549.a.a.b	ENSGT00950000183051.a.a.a #26
Poecilia	ANCESTRAL SPECIES	24	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a.g	ENSGT00390000014542	ENSGT00940000157485	ENSGT00940000177924	ENSGT00390000009042	ENSGT00390000008281	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b.h	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000156500.j #22	ENSGT00940000156500.i #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893	ENSGT00940000155549.a.a.b	ENSGT00950000183051.a.a.a #26
NAME_6	ANCESTRAL SPECIES	171	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a.g	ENSGT00390000014542	ENSGT00940000157485	ENSGT00940000177924	ENSGT00390000009042	ENSGT00390000008281	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b.h	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000156500.j #22	ENSGT00940000156500.i #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893
Amazon molly	MODERN SPECIES	419	tmem79a (ENSPFOG00000008048)	mef2d (ENSPFOG00000007905)	ENSPFOG00000007758	mrpl24 (ENSPFOG00000007709)	HDGF (ENSPFOG00000007632)	prcc (ENSPFOG00000007578)	mrpl9 (ENSPFOG00000007514)	si:dkey-266f7.9 (ENSPFOG00000007505)	rpz2 (ENSPFOG00000007497)	krit1 (ENSPFOG00000007240)	cyp51 (ENSPFOG00000007109)	ENSPFOG00000006927	MTERF1 (ENSPFOG00000006919)	dus3l (ENSPFOG00000006750)	cndp2 (ENSPFOG00000006653) #22	cndp2 (ENSPFOG00000006107) #22	ENSPFOG00000005814	ENSPFOG00000005641	SCRT1 (ENSPFOG00000005616)	zgc:63863 (ENSPFOG00000005444)	dgat1a (ENSPFOG00000005252)	cfap20 (ENSPFOG00000005171)	SLC45A4 (ENSPFOG00000004858)	DENND3 (ENSPFOG00000004408)	PTK2 (ENSPFOG00000003397)	rplp1 (ENSPFOG00000003310)	clptm1l (ENSPFOG00000003009)	trps1 (ENSPFOG00000002852)	ENSPFOG00000002808
Sailfin molly	MODERN SPECIES	49		ENSPLAG00000011384	mrpl24 (ENSPLAG00000011406)	ENSPLAG00000011420	ENSPLAG00000011429	prcc (ENSPLAG00000011435)	mrpl9 (ENSPLAG00000011446)	si:dkey-266f7.9 (ENSPLAG00000011455)	rpz2 (ENSPLAG00000011463)	krit1 (ENSPLAG00000011505)	cyp51 (ENSPLAG00000011514)	ENSPLAG00000011562	MTERF1 (ENSPLAG00000011584)	dus3l (ENSPLAG00000011636)	cndp2 (ENSPLAG00000011675) #22	cndp2 (ENSPLAG00000011693) #22	ENSPLAG00000011704	ENSPLAG00000011708	SCRT1 (ENSPLAG00000011718)	zgc:63863 (ENSPLAG00000011723)	dgat1a (ENSPLAG00000011729)	cfap20 (ENSPLAG00000011743)	SLC45A4 (ENSPLAG00000011749)	ENSPLAG00000011758	ENSPLAG00000011768	ENSPLAG00000011795	ENSPLAG00000011819
Guppy	MODERN SPECIES	441	ENSPREG00000012657	mrpl24 (ENSPREG00000012621)	HDGF (ENSPREG00000012607)	ENSPREG00000012601	prcc (ENSPREG00000012592)	mrpl9 (ENSPREG00000012577)	si:dkey-266f7.9 (ENSPREG00000012564)	rpz2 (ENSPREG00000012560)	krit1 (ENSPREG00000012501)	cyp51 (ENSPREG00000012465)	ENSPREG00000012409	ENSPREG00000012377	MTERF1 (ENSPREG00000012369)	dus3l (ENSPREG00000012315)	cndp2 (ENSPREG00000012281) #22	cndp2 (ENSPREG00000012256) #22	ENSPREG00000012196	slc39a4 (ENSPREG00000012173)	ENSPREG00000012166	ENSPREG00000012153	zgc:63863 (ENSPREG00000012136)	dgat1a (ENSPREG00000012064)	cfap20 (ENSPREG00000012033)	ENSPREG00000012010	SLC45A4 (ENSPREG00000011989)	DENND3 (ENSPREG00000011896)	PTK2 (ENSPREG00000011683)	rplp1 (ENSPREG00000011579)	clptm1l (ENSPREG00000011507)	trps1 (ENSPREG00000011468)	CSMD3 (ENSPREG00000011344)
Platyfish	MODERN SPECIES	4	mef2d (ENSXMAG00000015057)	ENSXMAG00000015085	mrpl24 (ENSXMAG00000015099)	HDGF (ENSXMAG00000025538)	prcc (ENSXMAG00000015108)	mrpl9 (ENSXMAG00000028983)	ENSXMAG00000022666	si:dkey-266f7.9 (ENSXMAG00000015124)	rpz2 (ENSXMAG00000015126)	krit1 (ENSXMAG00000015127)	cyp51 (ENSXMAG00000015173)	ENSXMAG00000015218	ENSXMAG00000029166	ENSXMAG00000029672	dus3l (ENSXMAG00000015252)	cndp2 (ENSXMAG00000015266) #22	ENSXMAG00000015315	ENSXMAG00000015339	SCRT1 (ENSXMAG00000015353)	zgc:63863 (ENSXMAG00000015355)	dgat1a (ENSXMAG00000015366)	cfap20 (ENSXMAG00000015399)	GPR20 (ENSXMAG00000015403)	SLC45A4 (ENSXMAG00000015412)	DENND3 (ENSXMAG00000015472)	PTK2 (ENSXMAG00000015476)	rplp1 (ENSXMAG00000015532)	clptm1l (ENSXMAG00000015553)	trps1 (ENSXMAG00000015559)	CSMD3 (ENSXMAG00000015566)	tshz1 (ENSXMAG00000023230) #26
NAME_4	ANCESTRAL SPECIES	10	ENSGT00390000014542	ENSGT00940000177924	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b.h	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500.j #22	ENSGT00940000156500.i #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893	ENSGT00940000155549.a.a.b	ENSGT00950000183051.a.a.a #26
Mummichog	MODERN SPECIES	2348	HDGF (ENSFHEG00000010383)	prcc (ENSFHEG00000010354)	mrpl9 (ENSFHEG00000010344)	ENSFHEG00000010333	si:dkey-266f7.9 (ENSFHEG00000010313)	rpz2 (ENSFHEG00000010304)	rpz2 (ENSFHEG00000010281)	krit1 (ENSFHEG00000010263)	cyp51 (ENSFHEG00000010179)	ENSFHEG00000010129	ENSFHEG00000010104	MTERF1 (ENSFHEG00000000224)	dus3l (ENSFHEG00000010091)	ENSFHEG00000010012	cndp2 (ENSFHEG00000010005) #22	cndp2 (ENSFHEG00000009872) #22	RECQL4 (ENSFHEG00000009855)	slc39a4 (ENSFHEG00000009832)	SCRT1 (ENSFHEG00000009794)	zgc:63863 (ENSFHEG00000009773)	dgat1a (ENSFHEG00000009713)	cfap20 (ENSFHEG00000009610)	GPR20 (ENSFHEG00000009588)	SLC45A4 (ENSFHEG00000009569)	ENSFHEG00000009492	DENND3 (ENSFHEG00000000219)	PTK2 (ENSFHEG00000009427)	rplp1 (ENSFHEG00000008862)	clptm1l (ENSFHEG00000008826)	trps1 (ENSFHEG00000008678)	CSMD3 (ENSFHEG00000008655)
Sheepshead minnow	MODERN SPECIES	1479										ENSCVAG00000007807	ENSCVAG00000007821	ENSCVAG00000007829	MTERF1 (ENSCVAG00000007837)	dus3l (ENSCVAG00000007874)	cndp2 (ENSCVAG00000007883) #22	cndp2 (ENSCVAG00000007927) #22	ENSCVAG00000007993	slc39a4 (ENSCVAG00000008003)
Cyprinodontoidei	ANCESTRAL SPECIES	11	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000177924	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b.h	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500.j #22	ENSGT00940000156500.i #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893	ENSGT00940000155549.a.a.b
NAME_4	ANCESTRAL SPECIES	10	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000177924	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b.h	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500.j #22	ENSGT00940000156500.i #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893	ENSGT00940000155549.a.a.b
Mummichog	MODERN SPECIES	2348	mrpl24 (ENSFHEG00000010405)	HDGF (ENSFHEG00000010383)	prcc (ENSFHEG00000010354)	mrpl9 (ENSFHEG00000010344)	ENSFHEG00000010333	si:dkey-266f7.9 (ENSFHEG00000010313)	rpz2 (ENSFHEG00000010304)	rpz2 (ENSFHEG00000010281)	krit1 (ENSFHEG00000010263)	cyp51 (ENSFHEG00000010179)	ENSFHEG00000010129	ENSFHEG00000010104	MTERF1 (ENSFHEG00000000224)	dus3l (ENSFHEG00000010091)	ENSFHEG00000010012	cndp2 (ENSFHEG00000010005) #22	cndp2 (ENSFHEG00000009872) #22	RECQL4 (ENSFHEG00000009855)	slc39a4 (ENSFHEG00000009832)	SCRT1 (ENSFHEG00000009794)	zgc:63863 (ENSFHEG00000009773)	dgat1a (ENSFHEG00000009713)	cfap20 (ENSFHEG00000009610)	GPR20 (ENSFHEG00000009588)	SLC45A4 (ENSFHEG00000009569)	ENSFHEG00000009492	DENND3 (ENSFHEG00000000219)	PTK2 (ENSFHEG00000009427)	rplp1 (ENSFHEG00000008862)	clptm1l (ENSFHEG00000008826)	trps1 (ENSFHEG00000008678)
Sheepshead minnow	MODERN SPECIES	1479											ENSCVAG00000007807	ENSCVAG00000007821	ENSCVAG00000007829	MTERF1 (ENSCVAG00000007837)	dus3l (ENSCVAG00000007874)	cndp2 (ENSCVAG00000007883) #22	cndp2 (ENSCVAG00000007927) #22	ENSCVAG00000007993	slc39a4 (ENSCVAG00000008003)
Poeciliinae	ANCESTRAL SPECIES	18	ENSGT00390000002390.b.f	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b.h	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000156500.j #22	ENSGT00940000156500.i #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893	ENSGT00940000155549.a.a.b
Poecilia	ANCESTRAL SPECIES	24	ENSGT00390000002390.b.f	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a.g	ENSGT00390000014542	ENSGT00940000157485	ENSGT00940000177924	ENSGT00390000009042	ENSGT00390000008281	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b.h	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000156500.j #22	ENSGT00940000156500.i #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893	ENSGT00940000155549.a.a.b
NAME_6	ANCESTRAL SPECIES	171	ENSGT00390000002390.b.f	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a.g	ENSGT00390000014542	ENSGT00940000157485	ENSGT00940000177924	ENSGT00390000009042	ENSGT00390000008281	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b.h	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000156500.j #22	ENSGT00940000156500.i #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893
Amazon molly	MODERN SPECIES	419	ENSPFOG00000023475	tmem79a (ENSPFOG00000008048)	mef2d (ENSPFOG00000007905)	ENSPFOG00000007758	mrpl24 (ENSPFOG00000007709)	HDGF (ENSPFOG00000007632)	prcc (ENSPFOG00000007578)	mrpl9 (ENSPFOG00000007514)	si:dkey-266f7.9 (ENSPFOG00000007505)	rpz2 (ENSPFOG00000007497)	krit1 (ENSPFOG00000007240)	cyp51 (ENSPFOG00000007109)	ENSPFOG00000006927	MTERF1 (ENSPFOG00000006919)	dus3l (ENSPFOG00000006750)	cndp2 (ENSPFOG00000006653) #22	cndp2 (ENSPFOG00000006107) #22	ENSPFOG00000005814	ENSPFOG00000005641	SCRT1 (ENSPFOG00000005616)	zgc:63863 (ENSPFOG00000005444)	dgat1a (ENSPFOG00000005252)	cfap20 (ENSPFOG00000005171)	SLC45A4 (ENSPFOG00000004858)	DENND3 (ENSPFOG00000004408)	PTK2 (ENSPFOG00000003397)	rplp1 (ENSPFOG00000003310)	clptm1l (ENSPFOG00000003009)	trps1 (ENSPFOG00000002852)	ENSPFOG00000002808
Sailfin molly	MODERN SPECIES	49			ENSPLAG00000011384	mrpl24 (ENSPLAG00000011406)	ENSPLAG00000011420	ENSPLAG00000011429	prcc (ENSPLAG00000011435)	mrpl9 (ENSPLAG00000011446)	si:dkey-266f7.9 (ENSPLAG00000011455)	rpz2 (ENSPLAG00000011463)	krit1 (ENSPLAG00000011505)	cyp51 (ENSPLAG00000011514)	ENSPLAG00000011562	MTERF1 (ENSPLAG00000011584)	dus3l (ENSPLAG00000011636)	cndp2 (ENSPLAG00000011675) #22	cndp2 (ENSPLAG00000011693) #22	ENSPLAG00000011704	ENSPLAG00000011708	SCRT1 (ENSPLAG00000011718)	zgc:63863 (ENSPLAG00000011723)	dgat1a (ENSPLAG00000011729)	cfap20 (ENSPLAG00000011743)	SLC45A4 (ENSPLAG00000011749)	ENSPLAG00000011758	ENSPLAG00000011768	ENSPLAG00000011795	ENSPLAG00000011819
Guppy	MODERN SPECIES	441	mef2d (ENSPREG00000012739)	ENSPREG00000012657	mrpl24 (ENSPREG00000012621)	HDGF (ENSPREG00000012607)	ENSPREG00000012601	prcc (ENSPREG00000012592)	mrpl9 (ENSPREG00000012577)	si:dkey-266f7.9 (ENSPREG00000012564)	rpz2 (ENSPREG00000012560)	krit1 (ENSPREG00000012501)	cyp51 (ENSPREG00000012465)	ENSPREG00000012409	ENSPREG00000012377	MTERF1 (ENSPREG00000012369)	dus3l (ENSPREG00000012315)	cndp2 (ENSPREG00000012281) #22	cndp2 (ENSPREG00000012256) #22	ENSPREG00000012196	slc39a4 (ENSPREG00000012173)	ENSPREG00000012166	ENSPREG00000012153	zgc:63863 (ENSPREG00000012136)	dgat1a (ENSPREG00000012064)	cfap20 (ENSPREG00000012033)	ENSPREG00000012010	SLC45A4 (ENSPREG00000011989)	DENND3 (ENSPREG00000011896)	PTK2 (ENSPREG00000011683)	rplp1 (ENSPREG00000011579)	clptm1l (ENSPREG00000011507)	trps1 (ENSPREG00000011468)
Oryzias	ANCESTRAL SPECIES	24	ENSGT00390000002390.b.f	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b.h	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000178701	ENSGT00530000063461.A.b	ENSGT00950000182914.a.a.a.d	ENSGT00940000155784.C.v	ENSGT00940000155113.a.a.f	ENSGT00970000197016
Oryzias_a	ANCESTRAL SPECIES	64	ENSGT00390000002390.b.f	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b.h	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554.u.a	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000178701
Japanese Medaka HdrR	MODERN SPECIES	2	ENSORLG00000026486	mrpl24 (ENSORLG00000020211)	ENSORLG00000028666	prcc (ENSORLG00000020217)	mrpl9 (ENSORLG00000026444)	si:dkey-266f7.9 (ENSORLG00000018515)	ENSORLG00000028610	rpz2 (ENSORLG00000020218)	krit1 (ENSORLG00000020220)	cyp51 (ENSORLG00000020002)	ENSORLG00000030522	ENSORLG00000024311	MTERF1 (ENSORLG00000027811)	dus3l (ENSORLG00000030245)	ENSORLG00000023295	cndp2 (ENSORLG00000019164) #22	ENSORLG00000030147	RECQL4 (ENSORLG00000024764)	SCRT1 (ENSORLG00000022825)	zgc:63863 (ENSORLG00000019247)	ENSORLG00000026428	ENSORLG00000027147	dgat1a (ENSORLG00000019263)	cfap20 (ENSORLG00000024355)	GPR20 (ENSORLG00000022557)	ENSORLG00000023702	SLC45A4 (ENSORLG00000026476)	ENSORLG00000028399	ENSORLG00000019222	ENSORLG00000025177	ENSORLG00000023685
Oryzias_b	ANCESTRAL SPECIES	31	ENSGT00940000163756.c.a	ENSGT00390000002390.b.f	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b.h	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00530000063461.A.b	ENSGT00950000182914.a.a.a.d	ENSGT00940000155784.C.v	ENSGT00940000155113.a.a.f	ENSGT00970000197016
Indian medaka	MODERN SPECIES		gng2 (ENSOMEG00000023305)	dusp23a (ENSOMEG00000023312)	txlnbb (ENSOMEG00000023322)	ENSOMEG00000023329	ENSOMEG00000023332	fuca2 (ENSOMEG00000023345)	TATDN3 (ENSOMEG00000023369)	COQ8A (ENSOMEG00000023393)	krit1 (ENSOMEG00000023406)	cyp51 (ENSOMEG00000023434)	ENSOMEG00000023464	ENSOMEG00000023478	MTERF1 (ENSOMEG00000023485)	dus3l (ENSOMEG00000023500)	ENSOMEG00000023503	cndp2 (ENSOMEG00000023514) #22	RECQL4 (ENSOMEG00000023534)	slc39a4 (ENSOMEG00000023543)	exd2 (ENSOMEG00000023552)	numb (ENSOMEG00000023564)	GALNT16 (ENSOMEG00000023575)	jkamp (ENSOMEG00000023589)	ENSOMEG00000023597	ENSOMEG00000023634	ENSOMEG00000023647	ENSOMEG00000023650	hadhab (ENSOMEG00000023658)	RPS6KA5 (ENSOMEG00000023672)	mbip (ENSOMEG00000023679)	nkx2.1 (ENSOMEG00000023684)	NKX2-8 (ENSOMEG00000023686)
Percomorphaceae_C	ANCESTRAL SPECIES	15	ENSGT00390000014542	ENSGT00940000177924	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00730000110871.b	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893
Eupercaria	ANCESTRAL SPECIES	11	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00730000110871.b	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893
Tetraodontidae	ANCESTRAL SPECIES	69	ENSGT00770000121795	ENSGT00390000002390.b.f	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00730000110871.a.a.a.a	ENSGT00730000110871.b	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000156500 #22	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554.ab
Tetraodon	MODERN SPECIES	16	chrac1 (ENSTNIG00000017796)	gatad1 (ENSTNIG00000017797)	ENSTNIG00000017525	ENSTNIG00000017526	mef2d (ENSTNIG00000017527)	BCAN (ENSTNIG00000017528)	mrpl24 (ENSTNIG00000017529)	ENSTNIG00000017530	prcc (ENSTNIG00000017531)	mrpl9 (ENSTNIG00000017532)	si:dkey-266f7.9 (ENSTNIG00000017533)	krit1 (ENSTNIG00000017534)	cyp51 (ENSTNIG00000017535)	ENSTNIG00000017536	dus3l (ENSTNIG00000017537)	cndp2 (ENSTNIG00000017538) #22	RECQL4 (ENSTNIG00000017539)	SLC39A4 (ENSTNIG00000017540)	ENSTNIG00000017541	zgc:63863 (ENSTNIG00000017542)	dgat1a (ENSTNIG00000017543)	cfap20 (ENSTNIG00000017544)	cers2a (ENSTNIG00000017545)	celf3a (ENSTNIG00000017546)	ENSTNIG00000017547	crabp2b (ENSTNIG00000017548)	scamp3 (ENSTNIG00000017549)	ENSTNIG00000000111	ash1l (ENSTNIG00000017550)	ENSTNIG00000017551	ENSTNIG00000017552
Fugu	MODERN SPECIES	3	ENSTRUG00000031020	ENSTRUG00000020056	mef2d (ENSTRUG00000013784)	ENSTRUG00000013629	mrpl24 (ENSTRUG00000013588)	ENSTRUG00000020123	prcc (ENSTRUG00000013509)	mrpl9 (ENSTRUG00000031887)	si:dkey-266f7.9 (ENSTRUG00000019794)	rpz2 (ENSTRUG00000021627)	krit1 (ENSTRUG00000013413)	ENSTRUG00000022386	ENSTRUG00000025255	MTERF1 (ENSTRUG00000030432)	ENSTRUG00000027682	cndp2 (ENSTRUG00000012921) #22	ENSTRUG00000026302	ENSTRUG00000012739	SCRT1 (ENSTRUG00000012719)	ENSTRUG00000031799	zgc:63863 (ENSTRUG00000012626)	dgat1a (ENSTRUG00000012581)	cfap20 (ENSTRUG00000026308)	cers2a (ENSTRUG00000012292)	celf3a (ENSTRUG00000012064)	rprd2a (ENSTRUG00000012016)	mrps21 (ENSTRUG00000022345)	crabp2b (ENSTRUG00000011951)	scamp3 (ENSTRUG00000011701)	ENSTRUG00000011671	ash1l (ENSTRUG00000022988)
Eupecaria_A	ANCESTRAL SPECIES	12	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893
Ballan wrasse	MODERN SPECIES	687													ENSLBEG00000015731	ENSLBEG00000015752	dus3l (ENSLBEG00000015795)	cndp2 (ENSLBEG00000015839) #22	RECQL4 (ENSLBEG00000015884)	ENSLBEG00000015941	ENSLBEG00000015992
Eupecaria_B	ANCESTRAL SPECIES	12	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893
Perciformes	ANCESTRAL SPECIES	11	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893
Cottioidei	ANCESTRAL SPECIES	16	ENSGT00390000002390.b.f	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000156500 #22	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893	ENSGT00940000155549.a.a.b	ENSGT00950000183051.a.a.a #26
Lumpfish	MODERN SPECIES	2	ENSCLMG00005001401	MEF2D (ENSCLMG00005001429)	ENSCLMG00005001479	mrpl24 (ENSCLMG00005001512)	HDGF (ENSCLMG00005001525)	prcc (ENSCLMG00005001541)	mrpl9 (ENSCLMG00005001551)	ENSCLMG00005001557	si:dkey-266f7.9 (ENSCLMG00005001567)	rpz2 (ENSCLMG00005001575)	krit1 (ENSCLMG00005001596)	cyp51 (ENSCLMG00005001706)	ENSCLMG00005001757	MTERF1 (ENSCLMG00005001788)	dus3l (ENSCLMG00005001799)	cndp2 (ENSCLMG00005002128) #22	ENSCLMG00005002139	ENSCLMG00005002140	SCRT1 (ENSCLMG00005002141)	zgc:63863 (ENSCLMG00005002142)	dgat1a (ENSCLMG00005002143)	cfap20 (ENSCLMG00005002144)	GPR20 (ENSCLMG00005002145)	SLC45A4 (ENSCLMG00005002146)	PTK2 (ENSCLMG00005002160)	drc1 (ENSCLMG00005002232)	rplp1 (ENSCLMG00005002236)	clptm1l (ENSCLMG00005002245)	ENSCLMG00005002260	CSMD3 (ENSCLMG00005002265)	tshz1 (ENSCLMG00005002275) #26
Stickleback	MODERN SPECIES	9	ENSGACG00000004248	ENSGACG00000004236	ENSGACG00000004235	tmem79a (ENSGACG00000004231)	mef2d (ENSGACG00000004227)	BCAN (ENSGACG00000004219)	mrpl24 (ENSGACG00000004206)	ENSGACG00000004199	prcc (ENSGACG00000004195)	mrpl9 (ENSGACG00000004192)	si:dkey-266f7.9 (ENSGACG00000004184)	krit1 (ENSGACG00000004168)	cyp51 (ENSGACG00000004161)	ENSGACG00000004143	dus3l (ENSGACG00000004109)	cndp2 (ENSGACG00000004084) #22	ENSGACG00000004076	SCRT1 (ENSGACG00000004072)	zgc:63863 (ENSGACG00000004066)	dgat1a (ENSGACG00000004051)	cfap20 (ENSGACG00000004039)	ENSGACG00000004037	SLC45A4 (ENSGACG00000004032)	DENND3 (ENSGACG00000004021)	PTK2 (ENSGACG00000004011)	ENSGACG00000004003	rplp1 (ENSGACG00000003995)	clptm1l (ENSGACG00000003981)	trps1 (ENSGACG00000003970)	ENSGACG00000003969	CSMD3 (ENSGACG00000003938)
Perciformes_a	ANCESTRAL SPECIES	14	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893	ENSGT00940000155549.a.a.b
Channel bull blenny	MODERN SPECIES	2	ehmt2 (ENSCGOG00000002267)	slc44a4 (ENSCGOG00000002109)	RNF5 (ENSCGOG00000002102)	prcc (ENSCGOG00000002100)	ENSCGOG00000002099	ENSCGOG00000002096	si:dkey-266f7.9 (ENSCGOG00000002093)	rpz2 (ENSCGOG00000002092)	krit1 (ENSCGOG00000001842)	cyp51 (ENSCGOG00000001577)	ENSCGOG00000001570	ENSCGOG00000001567	MTERF1 (ENSCGOG00000001566)	dus3l (ENSCGOG00000001553)	ENSCGOG00000001548	cndp2 (ENSCGOG00000001355) #22	ENSCGOG00000001340	RECQL4 (ENSCGOG00000001283)	ENSCGOG00000014107	SCRT1 (ENSCGOG00000014105)	KLHL10 (ENSCGOG00000014089)	zgc:63863 (ENSCGOG00000014085)	dgat1a (ENSCGOG00000013924)	cfap20 (ENSCGOG00000013912)	GPR20 (ENSCGOG00000013911)	SLC45A4 (ENSCGOG00000013897)	DENND3 (ENSCGOG00000013831)	PTK2 (ENSCGOG00000011000)	rplp1 (ENSCGOG00000010946)	clptm1l (ENSCGOG00000010577)	ENSCGOG00000010558
Pike perch	DUPLICATION
Pike perch	MODERN SPECIES	13	mef2d (ENSSLUG00000013297)	ENSSLUG00000013308	mrpl24 (ENSSLUG00000013318)	ENSSLUG00000013326	prcc (ENSSLUG00000013331)	mrpl9 (ENSSLUG00000000108)	si:dkey-266f7.9 (ENSSLUG00000000112)	rpz2 (ENSSLUG00000000119)	krit1 (ENSSLUG00000000135)	cyp51 (ENSSLUG00000000159)	ENSSLUG00000000181	MTERF1 (ENSSLUG00000000198)	ENSSLUG00000000202	dus3l (ENSSLUG00000000227)	ENSSLUG00000000253	cndp2 (ENSSLUG00000000375) #22	RECQL4 (ENSSLUG00000000620)	ENSSLUG00000000632	SCRT1 (ENSSLUG00000000637)	KLHL10 (ENSSLUG00000000646)	zgc:63863 (ENSSLUG00000000669)	dgat1a (ENSSLUG00000000703)	cfap20 (ENSSLUG00000000762)	ENSSLUG00000000766	SLC45A4 (ENSSLUG00000000775)	DENND3 (ENSSLUG00000000799)	PTK2 (ENSSLUG00000000917)	rplp1 (ENSSLUG00000001213)	clptm1l (ENSSLUG00000001221)	ENSSLUG00000001237	trps1 (ENSSLUG00000001242)
Pike perch	MODERN SPECIES	177	ENSSLUG00000006188	fga (ENSSLUG00000006182)	fgb (ENSSLUG00000005995)	ENSSLUG00000005976	ENSSLUG00000005972	ENSSLUG00000005968	ENSSLUG00000005965	tlr2 (ENSSLUG00000005951)	ENSSLUG00000005911	ENSSLUG00000005891	rnf175 (ENSSLUG00000005862)	ENSSLUG00000005674	ENSSLUG00000005570	ENSSLUG00000005534	ENSSLUG00000005525	cndp2 (ENSSLUG00000005498) #22	ENSSLUG00000005463	ENSSLUG00000005344	ENSSLUG00000005283	ENSSLUG00000004974	ENSSLUG00000004950	ENSSLUG00000004945	ENSSLUG00000004942	ENSSLUG00000004937	ENSSLUG00000004929	ENSSLUG00000004898	ENSSLUG00000004885	ENSSLUG00000004877	ENSSLUG00000004792	ENSSLUG00000004762	ENSSLUG00000004754
Eupecaria_C	ANCESTRAL SPECIES	13	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	10	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00530000063461.A.b	ENSGT00940000157893	ENSGT00940000155549.a.a.b
Large yellow croaker	MODERN SPECIES	484	mef2d (ENSLCRG00005006577)	ENSLCRG00005006608	mrpl24 (ENSLCRG00005006609)	HDGF (ENSLCRG00005006610)	prcc (ENSLCRG00005006612)	mrpl9 (ENSLCRG00005006613)	ENSLCRG00005006615	si:dkey-266f7.9 (ENSLCRG00005006616)	rpz2 (ENSLCRG00005006617)	krit1 (ENSLCRG00005006627)	ENSLCRG00005007092	ENSLCRG00005007095	MTERF1 (ENSLCRG00005007098)	dus3l (ENSLCRG00005007104)	ENSLCRG00005007332	cndp2 (ENSLCRG00005007336) #22	ENSLCRG00005007495	ENSLCRG00005007521	ENSLCRG00005007524	SCRT1 (ENSLCRG00005007526)	KLHL10 (ENSLCRG00005007530)	zgc:63863 (ENSLCRG00005007533)	dgat1a (ENSLCRG00005003023)	cfap20 (ENSLCRG00005004526)	ENSLCRG00005004532	SLC45A4 (ENSLCRG00005004535)	DENND3 (ENSLCRG00005004563)	PTK2 (ENSLCRG00005004656)	clptm1l (ENSLCRG00005005246)	trps1 (ENSLCRG00005005352)	ENSLCRG00005005355
European seabass	MODERN SPECIES	22	ENSDLAG00005029889	ENSDLAG00005031202	ENSDLAG00005012278	ENSDLAG00005012159	MRPL24 (ENSDLAG00005029464)	ENSDLAG00005032519	PRCC (ENSDLAG00005034816)	ENSDLAG00005028941	ENSDLAG00005034544	ENSDLAG00005012111	ENSDLAG00005012066	cyp51 (ENSDLAG00005011976)	ENSDLAG00005011838	dus3l (ENSDLAG00005011491)	ENSDLAG00005030960	ENSDLAG00005011330 #22	ENSDLAG00005010708	ENSDLAG00005010700	ENSDLAG00005010689	ENSDLAG00005010627	zgc:63863 (ENSDLAG00005027179)	dgat1a (ENSDLAG00005010300)	cfap20 (ENSDLAG00005010284)	ENSDLAG00005010275	ENSDLAG00005010272	ENSDLAG00005010225	ENSDLAG00005009634	ENSDLAG00005009543	ENSDLAG00005009523	ENSDLAG00005006477	ENSDLAG00005006308 #26
Gilthead seabream	MODERN SPECIES	17	ENSSAUG00010013085	mef2d (ENSSAUG00010013092)	ENSSAUG00010013128	mrpl24 (ENSSAUG00010013129)	HDGF (ENSSAUG00010013131)	prcc (ENSSAUG00010013136)	mrpl9 (ENSSAUG00010013137)	ENSSAUG00010013138	si:dkey-266f7.9 (ENSSAUG00010013139)	rpz2 (ENSSAUG00010013141)	krit1 (ENSSAUG00010013145)	cyp51 (ENSSAUG00010013151)	ENSSAUG00010013300	dus3l (ENSSAUG00010013314)	ENSSAUG00010013955	cndp2 (ENSSAUG00010013976) #22	ENSSAUG00010014271	ENSSAUG00010014274	ENSSAUG00010014275	SCRT1 (ENSSAUG00010014276)	zgc:63863 (ENSSAUG00010014277)	dgat1a (ENSSAUG00010014280)	cfap20 (ENSSAUG00010014298)	GPR20 (ENSSAUG00010014299)	SLC45A4 (ENSSAUG00010014300)	DENND3 (ENSSAUG00010014304)	PTK2 (ENSSAUG00010014341)	rplp1 (ENSSAUG00010016580)	clptm1l (ENSSAUG00010016589)	trps1 (ENSSAUG00010016602)	CSMD3 (ENSSAUG00010016627)
Percomorphaceae_D	ANCESTRAL SPECIES	14	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000177924	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893
Anabantaria	ANCESTRAL SPECIES	16	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893
Anabantoidei	ANCESTRAL SPECIES	19	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893
Siamese fighting fish	DUPLICATION
Siamese fighting fish	MODERN SPECIES	2	prcc (ENSBSLG00000014447)	mrpl9 (ENSBSLG00000014439)	ENSBSLG00000014428	si:dkey-266f7.9 (ENSBSLG00000014420)	rpz2 (ENSBSLG00000014416)	krit1 (ENSBSLG00000014397)	cyp51 (ENSBSLG00000014294)	ENSBSLG00000014088	MTERF1 (ENSBSLG00000013782)	ENSBSLG00000013771	cndp2 (ENSBSLG00000013763) #22	RECQL4 (ENSBSLG00000013737)	slc39a4 (ENSBSLG00000013723)	dus3l (ENSBSLG00000013508)	ENSBSLG00000013459	cndp2 (ENSBSLG00000013395) #22	RECQL4 (ENSBSLG00000013203)	ENSBSLG00000013118	slc39a4 (ENSBSLG00000013147)	ENSBSLG00000013078	SCRT1 (ENSBSLG00000013037)	zgc:63863 (ENSBSLG00000012203)	dgat1a (ENSBSLG00000011772)	cfap20 (ENSBSLG00000011160)	ENSBSLG00000011150	SLC45A4 (ENSBSLG00000011127)	DENND3 (ENSBSLG00000010895)	PTK2 (ENSBSLG00000010100)	rplp1 (ENSBSLG00000010024)	clptm1l (ENSBSLG00000008845)	trps1 (ENSBSLG00000008809)
Siamese fighting fish	MODERN SPECIES	2	tmem79a (ENSBSLG00000014819)	mef2d (ENSBSLG00000014742)	ENSBSLG00000014691	mrpl24 (ENSBSLG00000014676)	HDGF (ENSBSLG00000014652)	prcc (ENSBSLG00000014447)	mrpl9 (ENSBSLG00000014439)	ENSBSLG00000014428	si:dkey-266f7.9 (ENSBSLG00000014420)	rpz2 (ENSBSLG00000014416)	krit1 (ENSBSLG00000014397)	cyp51 (ENSBSLG00000014294)	ENSBSLG00000014088	MTERF1 (ENSBSLG00000013782)	ENSBSLG00000013771	cndp2 (ENSBSLG00000013763) #22	RECQL4 (ENSBSLG00000013737)	slc39a4 (ENSBSLG00000013723)	dus3l (ENSBSLG00000013508)	ENSBSLG00000013459	cndp2 (ENSBSLG00000013395) #22	RECQL4 (ENSBSLG00000013203)	ENSBSLG00000013118	slc39a4 (ENSBSLG00000013147)	ENSBSLG00000013078	SCRT1 (ENSBSLG00000013037)	zgc:63863 (ENSBSLG00000012203)	dgat1a (ENSBSLG00000011772)	cfap20 (ENSBSLG00000011160)	ENSBSLG00000011150	SLC45A4 (ENSBSLG00000011127)
Climbing perch	MODERN SPECIES	2	MRPL24 (ENSATEG00000010477)	ENSATEG00000029234	PRCC (ENSATEG00000025563)	ENSATEG00000010495	ENSATEG00000010534	ENSATEG00000025479	ENSATEG00000028202	ENSATEG00000010716	KRIT1 (ENSATEG00000010732)	cyp51 (ENSATEG00000010813)	ENSATEG00000010870	ENSATEG00000011024	MTERF1 (ENSATEG00000011055)	dus3l (ENSATEG00000011064)	ENSATEG00000011138	ENSATEG00000011189 #22	ENSATEG00000011464	ENSATEG00000011645	ENSATEG00000011660	ENSATEG00000026499	zgc:63863 (ENSATEG00000011715)	dgat1a (ENSATEG00000011833)	ENSATEG00000026031	cfap20 (ENSATEG00000030112)	ENSATEG00000011899	ENSATEG00000011943	DENND3 (ENSATEG00000012018)	ENSATEG00000012064	ENSATEG00000012174	clptm1l (ENSATEG00000012184)	ENSATEG00000012244
Zig-zag eel	MODERN SPECIES	2	ENSMAMG00000016197	ENSMAMG00000016131	MRPL24 (ENSMAMG00000028466)	ENSMAMG00000025205	PRCC (ENSMAMG00000016095)	ENSMAMG00000016085	ENSMAMG00000027872	ENSMAMG00000016072	ENSMAMG00000016058	KRIT1 (ENSMAMG00000015987)	cyp51 (ENSMAMG00000015807)	ENSMAMG00000015737	MTERF1 (ENSMAMG00000015682)	dus3l (ENSMAMG00000015637)	ENSMAMG00000015608	ENSMAMG00000015582 #22	ENSMAMG00000015565	slc39a4 (ENSMAMG00000015561)	ENSMAMG00000015541	ENSMAMG00000015514	zgc:63863 (ENSMAMG00000015459)	dgat1a (ENSMAMG00000015394)	cfap20 (ENSMAMG00000015366)	ENSMAMG00000015327	ENSMAMG00000015281	ENSMAMG00000015260	ENSMAMG00000015199	ENSMAMG00000015182	clptm1l (ENSMAMG00000015115)	ENSMAMG00000015100	ENSMAMG00000026702
Carangaria	ANCESTRAL SPECIES	14	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000177924	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT01010000222656	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893	ENSGT00940000155549.a.a.b
Carangaria_A	ANCESTRAL SPECIES	16	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a.d	ENSGT00390000014542	ENSGT00940000177924	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00730000112601	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.e.b	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b
Seriola	ANCESTRAL SPECIES	12	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a.d	ENSGT00390000014542	ENSGT00940000177924	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00930000151026	ENSGT00730000110871.a.a.a.a	ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00940000154664.h.n.c	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.e.b	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893
Greater amberjack	MODERN SPECIES	48	ENSSDUG00000014617	ENSSDUG00000014564	mrpl24 (ENSSDUG00000014548)	ENSSDUG00000014536	HDGF (ENSSDUG00000014524)	prcc (ENSSDUG00000014446)	mrpl9 (ENSSDUG00000014433)	si:dkey-266f7.9 (ENSSDUG00000014422)	rpz2 (ENSSDUG00000014419)	krit1 (ENSSDUG00000014394)	cyp51 (ENSSDUG00000014170)	ENSSDUG00000013622	MTERF1 (ENSSDUG00000013580)	dus3l (ENSSDUG00000013517)	ENSSDUG00000013486	cndp2 (ENSSDUG00000013309) #22	RECQL4 (ENSSDUG00000013245)	slc39a4 (ENSSDUG00000013223)	SCRT1 (ENSSDUG00000013215)	KLHL10 (ENSSDUG00000013192)	ENSSDUG00000013189	zgc:63863 (ENSSDUG00000013176)	dgat1a (ENSSDUG00000013146)	cfap20 (ENSSDUG00000013130)	GPR20 (ENSSDUG00000013098)	SLC45A4 (ENSSDUG00000013026)	DENND3 (ENSSDUG00000012929)	PTK2 (ENSSDUG00000012750)	rplp1 (ENSSDUG00000012713)	clptm1l (ENSSDUG00000012627)	trps1 (ENSSDUG00000012576)
Yellowtail amberjack	MODERN SPECIES	2834	ENSSLDG00000015454	mef2d (ENSSLDG00000015496)	ENSSLDG00000015583	mrpl24 (ENSSLDG00000015607)	ENSSLDG00000015622	HDGF (ENSSLDG00000015635)	prcc (ENSSLDG00000015646)	mrpl9 (ENSSLDG00000015665)	si:dkey-266f7.9 (ENSSLDG00000015682)	rpz2 (ENSSLDG00000015697)	krit1 (ENSSLDG00000015718)	cyp51 (ENSSLDG00000015791)	ENSSLDG00000015913	dus3l (ENSSLDG00000016115)	ENSSLDG00000016174	cndp2 (ENSSLDG00000016255) #22	RECQL4 (ENSSLDG00000016407)	slc39a4 (ENSSLDG00000016439)	ENSSLDG00000016454	KLHL10 (ENSSLDG00000016475)
Barramundi perch	MODERN SPECIES	331	mef2d (ENSLCAG00010004729)	ENSLCAG00010004703	mrpl24 (ENSLCAG00010004691)	HDGF (ENSLCAG00010004687)	prcc (ENSLCAG00010004686)	mrpl9 (ENSLCAG00010004682)	si:dkey-266f7.9 (ENSLCAG00010004678)	rpz2 (ENSLCAG00010004674)	krit1 (ENSLCAG00010004472)	cyp51 (ENSLCAG00010004316)	ENSLCAG00010004300	ENSLCAG00010004284	MTERF1 (ENSLCAG00010004271)	dus3l (ENSLCAG00010004256)	ENSLCAG00010004242	cndp2 (ENSLCAG00010004054) #22	RECQL4 (ENSLCAG00010003901)	slc39a4 (ENSLCAG00010003862)	ENSLCAG00010003851	SCRT1 (ENSLCAG00010003847)	KLHL10 (ENSLCAG00010003844)	ENSLCAG00010003840	zgc:63863 (ENSLCAG00010003829)	dgat1a (ENSLCAG00010003818)	cfap20 (ENSLCAG00010003811)	GPR20 (ENSLCAG00010003806)	SLC45A4 (ENSLCAG00010003786)	ENSLCAG00010003767	ENSLCAG00010003763
Pleuronectoidei	ANCESTRAL SPECIES	15													ENSGT00530000063817.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00940000160387	ENSGT00940000160042	ENSGT00940000154491.c.b.b	ENSGT00390000014944.b	ENSGT00950000183081.b.i.b	ENSGT00390000004554	ENSGT01040000240444.B.a	ENSGT00950000182914.a.a.a.c.b	ENSGT00940000155784.C.u.b	ENSGT00940000155113.a.a	ENSGT00550000074698	ENSGT00530000063461.A.b	ENSGT00940000157893	ENSGT00940000155549.a.a.b	ENSGT00950000183051.a.a.a #26
Turbot	DUPLICATION
Turbot	MODERN SPECIES	14	ENSSMAG00000004131	ENSSMAG00000004153	ENSSMAG00000004294	MRPL24 (ENSSMAG00000026141)	ENSSMAG00000004372	PRCC (ENSSMAG00000004383)	ENSSMAG00000004399	ENSSMAG00000004427	ENSSMAG00000035846	ENSSMAG00000004455	ENSSMAG00000004460	ENSSMAG00000004854	ENSSMAG00000004888	ENSSMAG00000004896	ENSSMAG00000004934	ENSSMAG00000004943 #22	ENSSMAG00000004982 #22	ENSSMAG00000005002	ENSSMAG00000005041	zgc:63863 (ENSSMAG00000005137)	ENSSMAG00000026994	dgat1a (ENSSMAG00000005178)	cfap20 (ENSSMAG00000031899)	ENSSMAG00000005278	ENSSMAG00000005307	DENND3 (ENSSMAG00000005636)	ENSSMAG00000005698	ENSSMAG00000005950	ENSSMAG00000006061	ENSSMAG00000006107	ENSSMAG00000024835 #26
Turbot	MODERN SPECIES	14	ENSSMAG00000004153	ENSSMAG00000004294	MRPL24 (ENSSMAG00000026141)	ENSSMAG00000004372	PRCC (ENSSMAG00000004383)	ENSSMAG00000004399	ENSSMAG00000004427	ENSSMAG00000035846	ENSSMAG00000004455	ENSSMAG00000004460	ENSSMAG00000004854	ENSSMAG00000004888	ENSSMAG00000004896	ENSSMAG00000004934	ENSSMAG00000004943 #22	ENSSMAG00000004982 #22	ENSSMAG00000005002	ENSSMAG00000005041	zgc:63863 (ENSSMAG00000005137)	ENSSMAG00000026994	dgat1a (ENSSMAG00000005178)	cfap20 (ENSSMAG00000031899)	ENSSMAG00000005278	ENSSMAG00000005307	DENND3 (ENSSMAG00000005636)	ENSSMAG00000005698	ENSSMAG00000005950	ENSSMAG00000006061	ENSSMAG00000006107	ENSSMAG00000024835 #26	ENSSMAG00000006560
Tongue sole	MODERN SPECIES	9	eomesa (ENSCSEG00000014731)	SLC4A7 (ENSCSEG00000014757)	HERPUD2 (ENSCSEG00000014805)	RECQL4 (ENSCSEG00000014814)	ENSCSEG00000014832	cfap20 (ENSCSEG00000014842)	dgat1a (ENSCSEG00000014856)	zgc:63863 (ENSCSEG00000014874)	SCRT1 (ENSCSEG00000014892)	ENSCSEG00000014902	DENND3 (ENSCSEG00000014911)	SLC45A4 (ENSCSEG00000014948)	dus3l (ENSCSEG00000014994)	GPR20 (ENSCSEG00000015024)	ENSCSEG00000015033	cndp2 (ENSCSEG00000015053) #22	ptpn2b (ENSCSEG00000015116)	psmg2 (ENSCSEG00000015153)	zgc:136493 (ENSCSEG00000015165)	ENSCSEG00000015168	ncaldb (ENSCSEG00000015173)	grhl2b (ENSCSEG00000015179)	znf706 (ENSCSEG00000015198)	YWHAZ (ENSCSEG00000015224)	ENSCSEG00000015241	LIX1L (ENSCSEG00000015252)	sf3b4 (ENSCSEG00000015258)	SV2A (ENSCSEG00000015269)	ENSCSEG00000015296	ENSCSEG00000015305	lingo4a (ENSCSEG00000015313)
Protacanthopterygii	ANCESTRAL SPECIES		ENSGT00940000158522.m	ENSGT00940000159283.c.a	ENSGT00950000182919.B.a.h	ENSGT00400000025005	ENSGT00940000157485	ENSGT00390000009042	ENSGT00390000008281	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b	ENSGT00530000063721.A	ENSGT00940000161427	ENSGT00930000151026	ENSGT00940000162584.i.b	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00950000183051.a.a.a #26	ENSGT00940000161408	ENSGT00950000182966.A.a.b.a.h	ENSGT00530000064067	ENSGT00390000002390.b.f	ENSGT00940000159463.n.b	ENSGT00940000157343.a.a	ENSGT00390000014542	ENSGT00940000154870.A.b	ENSGT00990000205603	ENSGT00940000161854.b	ENSGT00530000063725.o	ENSGT00730000111394	ENSGT00940000156361.A.a	ENSGT00940000164158.A.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	859									ENSGT00940000157485.u	ENSGT00390000009042.h	ENSGT00940000165143.a.b.p.b.a	ENSGT00530000063721.A.i	ENSGT00930000151026.u.b	ENSGT00970000193390.c.a.b.b.b.a	ENSGT00550000075134.e	ENSGT00940000156500.q #22
Salmoninae_a	ANCESTRAL SPECIES	28	ENSGT00390000004097.b.j.b	ENSGT00990000204388.d	ENSGT00940000158522.m.k	ENSGT00940000159283.c.a.c	ENSGT00950000182919.B.a.h.d.a	ENSGT00940000157485.u	ENSGT00390000009042.h.a	ENSGT00940000165143.a.b.p.b.a	ENSGT00530000063721.A.i	ENSGT00930000151026.u.b	ENSGT00730000110871.a.a.a.a.fb	ENSGT00530000063817.a	ENSGT00970000193390.c.a.b.b.b.a	ENSGT00940000162584.i.b.b	ENSGT00550000075134.e	ENSGT00940000156500.q #22	ENSGT00950000183051.a.a.a.c #26	ENSGT00940000161408.d	ENSGT00950000182966.A.a.b.a.h.d	ENSGT00500000044904.a.b.g.a.a	ENSGT00500000044904.a.b.g.a.b
Oncorhynchus	ANCESTRAL SPECIES	29	ENSGT00390000004097.b.j.b	ENSGT00990000204388.d	ENSGT00940000158522.m.k	ENSGT00940000159283.c.a.c	ENSGT00950000182919.B.a.h.d.a	ENSGT00940000157485.u	ENSGT00390000009042.h.a	ENSGT00940000165143.a.b.p.b.a	ENSGT00530000063721.A.i	ENSGT00930000151026.u.b	ENSGT00730000110871.a.a.a.a.fb	ENSGT00530000063817.a.q	ENSGT00970000193390.c.a.b.b.b.a	ENSGT00940000162584.i.b.b	ENSGT00550000075134.e	ENSGT00940000156500.q #22	ENSGT00950000183051.a.a.a.c #26	ENSGT00940000161408.d	ENSGT01030000234589.g.a.a.b.a	ENSGT00940000153770.h.a.b.a.b.b	ENSGT01030000234589.g.a.a.a	ENSGT01100000263549.j.a.b.a	ENSGT00940000153770.h.a.b.a.a	ENSGT00940000154869.b.d	ENSGT00940000153770.h.a.b.a.b.a	ENSGT01030000234589.g.a.a.b.b	ENSGT01100000263549.j.a.b.b	ENSGT00950000182912.b.a.a.a.b.a.a	ENSGT00950000182966.A.a.b.a.h.d
Oncorhynchus_a	ANCESTRAL SPECIES	29	ENSGT00390000004097.b.j.b	ENSGT00990000204388.d	ENSGT00940000158522.m.k	ENSGT00940000159283.c.a.c	ENSGT00950000182919.B.a.h.d.a	ENSGT00940000157485.u	ENSGT00390000009042.h.a	ENSGT00940000165143.a.b.p.b.a	ENSGT00530000063721.A.i	ENSGT00930000151026.u.b	ENSGT00730000110871.a.a.a.a.fb	ENSGT00530000063817.a.q	ENSGT00970000193390.c.a.b.b.b.a	ENSGT00940000162584.i.b.b	ENSGT00550000075134.e	ENSGT00940000156500.q #22	ENSGT00950000183051.a.a.a.c #26	ENSGT00940000161408.d	ENSGT00940000153770.h.a.a	ENSGT01100000263549.j.a.b.b	ENSGT01030000234589.g.a.a.b.a	ENSGT00950000182912.b.a.a.a.b.a.a	ENSGT00950000182966.A.a.b.a.h.d
Coho salmon	MODERN SPECIES	8	txnipa (ENSOKIG00005018718)	thbs3b (ENSOKIG00005018833)	ENSOKIG00005020574	ENSOKIG00005020623	HDGF (ENSOKIG00005020633)	ENSOKIG00005020642	ENSOKIG00005020655	KRIT1 (ENSOKIG00005020670)	cyp51 (ENSOKIG00005020736)	ENSOKIG00005021127	MTERF1 (ENSOKIG00005021131)	ENSOKIG00005021137	FZD1 (ENSOKIG00005021152)	FZD1 (ENSOKIG00005021170)	dus3l (ENSOKIG00005021219)	cndp2 (ENSOKIG00005022011) #22	tshz1 (ENSOKIG00005022861) #26	znf516 (ENSOKIG00005022872)	ENSOKIG00005022891	ENSOKIG00005022991	ENSOKIG00005023258	ENSOKIG00005023263	ENSOKIG00005023275	ENSOKIG00005023296	ENSOKIG00005023308	ENSOKIG00005023334	ENSOKIG00005023365	ENSOKIG00005023369	ENSOKIG00005023374	ENSOKIG00005023415	MEF2D (ENSOKIG00005023430)
Chinook salmon	MODERN SPECIES	4	gatad2b (ENSOTSG00005009672)	polr3gla (ENSOTSG00005009673)	txnipa (ENSOTSG00005009674)	thbs3b (ENSOTSG00005009681)	mtx1b (ENSOTSG00005013309)	HDGF (ENSOTSG00005013311)	prcc (ENSOTSG00005013313)	rpz2 (ENSOTSG00005013315)	krit1 (ENSOTSG00005013317)	cyp51 (ENSOTSG00005013330)	ENSOTSG00005013893	MTERF1 (ENSOTSG00005013895)	ENSOTSG00005013897	fzd1 (ENSOTSG00005013899)	dus3l (ENSOTSG00005013909)	cndp2 (ENSOTSG00005014257) #22	tshz1 (ENSOTSG00005014595) #26	znf516 (ENSOTSG00005014597)	ENSOTSG00005014598	ENSOTSG00005014600	ENSOTSG00005014601	ENSOTSG00005014602	ENSOTSG00005014603	ENSOTSG00005014605	ENSOTSG00005014607	ENSOTSG00005014609	ENSOTSG00005014610	ENSOTSG00005014614	mef2d (ENSOTSG00005014617)	BCAN (ENSOTSG00005014621)	ENSOTSG00005014625
Rainbow trout	MODERN SPECIES	9	ENSOMYG00000023160	ENSOMYG00000023141	ENSOMYG00000023121	ENSOMYG00000023059	ENSOMYG00000023042	KRIT1 (ENSOMYG00000022964)	cyp51 (ENSOMYG00000022720)	ENSOMYG00000065290	ENSOMYG00000022465	ENSOMYG00000058747	MTERF1 (ENSOMYG00000022305)	ENSOMYG00000022295	FZD1 (ENSOMYG00000022288)	dus3l (ENSOMYG00000022215)	ENSOMYG00000022189	cndp2 (ENSOMYG00000020972) #22	ENSOMYG00000020835 #26	ENSOMYG00000054391	ENSOMYG00000060928	znf516 (ENSOMYG00000020814)	ENSOMYG00000020708	ENSOMYG00000020736	ENSOMYG00000052652	ENSOMYG00000052246	ENSOMYG00000074249	ENSOMYG00000049106	ENSOMYG00000020729	ENSOMYG00000049830	ENSOMYG00000069494	ENSOMYG00000020663	ENSOMYG00000052356
Salmo	ANCESTRAL SPECIES	2	ENSGT01050000244841.A.a.a.b.d ##32	ENSGT00390000004097.b.j.b	ENSGT00990000204388.d	ENSGT00940000158522.m.k	ENSGT00940000159283.c.a.c	ENSGT00950000182919.B.a.h.d.a	ENSGT00940000157485.u	ENSGT00390000009042.h.a	ENSGT00940000165143.a.b.p.b.a	ENSGT00530000063721.A.i	ENSGT00930000151026.u.b	ENSGT00730000110871.a.a.a.a.fb	ENSGT00530000063817.a	ENSGT00970000193390.c.a.b.b.b.a	ENSGT00550000075134.e	ENSGT00940000156500.q #22	ENSGT00950000183051.a.a.a.c #26	ENSGT00940000161408.d
Atlantic salmon	MODERN SPECIES	19	ENSSSAG00000063343	ENSSSAG00000063338	txnip (ENSSSAG00000063333)	ENSSSAG00000062793	ENSSSAG00000062587	ENSSSAG00000062558	PRCC (ENSSSAG00000062526)	ENSSSAG00000099070	krit1 (ENSSSAG00000062253)	cyp51 (ENSSSAG00000059749)	ENSSSAG00000059650	MTERF1 (ENSSSAG00000106222)	ENSSSAG00000109696	dus3l (ENSSSAG00000059369)	ENSSSAG00000111419	cndp2 (ENSSSAG00000058866) #22	ENSSSAG00000093835 #26	ENSSSAG00000058840	znf516 (ENSSSAG00000058806)	ENSSSAG00000112227	ENSSSAG00000058781	ENSSSAG00000058764	ENSSSAG00000120108	ENSSSAG00000083075	ENSSSAG00000058744	ENSSSAG00000099708	ENSSSAG00000113654	ENSSSAG00000091504	ENSSSAG00000111467	ENSSSAG00000087962	ENSSSAG00000099820
River trout	MODERN SPECIES	27	txnipa (ENSSTUG00000045792)	thbs3b (ENSSTUG00000043786)	mtx1b (ENSSTUG00000043730)	HDGF (ENSSTUG00000043726)	prcc (ENSSTUG00000043712)	rpz2 (ENSSTUG00000043707)	ENSSTUG00000043701	krit1 (ENSSTUG00000043598)	cyp51 (ENSSTUG00000043420)	ENSSTUG00000043346	MTERF1 (ENSSTUG00000043339)	ENSSTUG00000043330	dus3l (ENSSTUG00000042566)	bdh2 (ENSSTUG00000042527)	ENSSTUG00000042520	cndp2 (ENSSTUG00000041778) #22	tshz1 (ENSSTUG00000041756) #26	znf516 (ENSSTUG00000041709)	ENSSTUG00000041698	ENSSTUG00000040813	ENSSTUG00000040746	ENSSTUG00000040720	ENSSTUG00000040711	ENSSTUG00000040697	ENSSTUG00000040686	ENSSTUG00000040669	ENSSTUG00000040649	ENSSTUG00000040626	ENSSTUG00000040614	ENSSTUG00000040600	ENSSTUG00000040581
Huchen	MODERN SPECIES	2825																cndp2 (ENSHHUG00000013269) #22
Salmoninae	ANCESTRAL SPECIES	105												ENSGT00940000163581.f.b.k.a	ENSGT00940000162584.i.b.a	ENSGT00550000075134.f	ENSGT00940000163253.a.a.b	ENSGT00940000156500.r #22	ENSGT00950000183051.a.a.a.d #26	ENSGT00940000161408.c	ENSGT00970000193381.a.a.c.b.a.a.b.a.b	ENSGT00950000182966.A.a.b.a.h	ENSGT00530000064067.o	ENSGT00390000002390.b.f.b	ENSGT00940000159463.n.b.a	ENSGT00530000064067.p	ENSGT00390000002390.b.f.a	ENSGT00940000159463.n.b.b	ENSGT00940000157343.a.a.n	ENSGT00390000014542.c	ENSGT00940000154870.A.b.c	ENSGT00940000161854.b.d	ENSGT00730000111394
Salmoninae_a	ANCESTRAL SPECIES	5	ENSGT00400000025005	ENSGT00940000157485.t	ENSGT00390000009042.g	ENSGT00390000008281	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b.p.b.b	ENSGT00530000063721.A.j	ENSGT00930000151026.v	ENSGT00940000161019.ub	ENSGT00930000151026.u.a	ENSGT00730000110871.a.a.a.a.gb	ENSGT00940000163581.f.b.k.a	ENSGT00940000162584.i.b.a	ENSGT00550000075134.f	ENSGT00940000163253.a.a.b	ENSGT00940000156500.r #22	ENSGT00950000183051.a.a.a.d #26	ENSGT00940000161408.c	ENSGT00970000193381.a.a.c.b.a.a.b.a.b	ENSGT01100000263549.j.b	ENSGT01030000234589.g.a.b	ENSGT00950000182966.A.a.b.a.h.c	ENSGT00530000064067.o	ENSGT00390000002390.b.f.b	ENSGT00940000159463.n.b.a	ENSGT00530000064067.p	ENSGT00390000002390.b.f.a	ENSGT00940000159463.n.b.b	ENSGT00940000157343.a.a.n	ENSGT00390000014542.c.a	ENSGT00940000154870.A.b.c
Salmo	ANCESTRAL SPECIES	2	ENSGT00940000159283.c.a.d	ENSGT00950000182919.B.a.h.c	ENSGT00400000025005	ENSGT00940000157485.t	ENSGT00390000009042.g	ENSGT00390000008281	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b.p.b.b	ENSGT00530000063721.A.j	ENSGT00940000161019.ub	ENSGT00930000151026.u.a	ENSGT00730000110871.a.a.a.a.gb	ENSGT00940000163581.f.b.k.a	ENSGT00550000075134.f	ENSGT00940000163253.a.a.b	ENSGT00940000156500.r #22	ENSGT00950000183051.a.a.a.d #26	ENSGT00940000161408.c	ENSGT00970000193381.a.a.c.b.a.a.b.a.b	ENSGT01100000263549.j.b	ENSGT01030000234589.g.a.b	ENSGT00950000182966.A.a.b.a.h.c	ENSGT00530000064067.o	ENSGT00390000002390.b.f.b	ENSGT00940000159463.n.b.a	ENSGT00940000157343.a.a.m	ENSGT00390000014542.d	ENSGT00940000154870.A.b.d	ENSGT00940000161854.b.c.a	ENSGT00940000161854.b.c.b	ENSGT00530000063725.o.rb
River trout	MODERN SPECIES	29	thbs3b (ENSSTUG00000031803)	ENSSTUG00000032919	HDGF (ENSSTUG00000032933)	prcc (ENSSTUG00000032937)	mrpl9 (ENSSTUG00000032961)	si:dkey-266f7.9 (ENSSTUG00000033006)	rpz2 (ENSSTUG00000033013)	krit1 (ENSSTUG00000033020)	ENSSTUG00000033092	cyp51 (ENSSTUG00000033110)	ENSSTUG00000033290	ENSSTUG00000033325	ENSSTUG00000033336	ENSSTUG00000033341	ENSSTUG00000033348	cndp2 (ENSSTUG00000033363) #22	tshz1 (ENSSTUG00000033470) #26	znf516 (ENSSTUG00000014422)	ENSSTUG00000014427	ENSSTUG00000014428	ENSSTUG00000014435	msto1 (ENSSTUG00000014437)	ENSSTUG00000014443	mef2d (ENSSTUG00000014448)	ENSSTUG00000014490	mrpl24 (ENSSTUG00000014506)	ENSSTUG00000014512	s100v2 (ENSSTUG00000014591)	prf1.2 (ENSSTUG00000014616)	ENSSTUG00000014627	zgc:64022 (ENSSTUG00000014670)
Atlantic salmon	MODERN SPECIES	5	ENSSSAG00000005646	ENSSSAG00000005628	ENSSSAG00000005617	RM09 (ENSSSAG00000005597)	ENSSSAG00000005589	ENSSSAG00000005580	KRIT1 (ENSSSAG00000005545)	ENSSSAG00000005531	ENSSSAG00000005253	ENSSSAG00000005008	ifi44 (ENSSSAG00000005212)	ENSSSAG00000096573	ENSSSAG00000106126	ENSSSAG00000112203	ENSSSAG00000004981	cndp2 (ENSSSAG00000004830) #22	ENSSSAG00000004779 #26	znf516 (ENSSSAG00000004752)	ENSSSAG00000101162	ENSSSAG00000004730	ENSSSAG00000099657	ENSSSAG00000004697	ENSSSAG00000102280	ENSSSAG00000112881	ENSSSAG00000004604	ENSSSAG00000004545	ENSSSAG00000004534	ENSSSAG00000004476	s100v2 (ENSSSAG00000110695)	S10AD (ENSSSAG00000004421)	prf1.2 (ENSSSAG00000109876)
Oncorhynchus	ANCESTRAL SPECIES	16	ENSGT00940000159283.c.a.d	ENSGT00950000182919.B.a.h.c	ENSGT00400000025005	ENSGT00940000157485.t	ENSGT00390000009042.h.b	ENSGT00390000008281.e	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b.p.b.b	ENSGT00530000063721.A.j	ENSGT00930000151026.u.a	ENSGT00730000110871.a.a.a.a.gb	ENSGT00940000163581.f.b.k.a	ENSGT00940000162584.i.b.a	ENSGT00550000075134.f	ENSGT00940000163253.a.a.b	ENSGT00940000156500.r #22	ENSGT00950000183051.a.a.a.d #26	ENSGT00940000161408.c	ENSGT00970000193381.a.a.c.b.a.a.b.a.b	ENSGT00950000182966.A.a.b.a.h.c.a	ENSGT00530000064067.o	ENSGT00390000002390.b.f.b	ENSGT00940000159463.n.b.a	ENSGT00530000064067.p	ENSGT00390000002390.b.f.a	ENSGT00940000159463.n.b.b	ENSGT00940000157343.a.a.n	ENSGT00940000154870.A.b.c	ENSGT00730000111394.f	ENSGT00940000164158.A.b.d	ENSGT00390000014273.b.l
Oncorhynchus_a	ANCESTRAL SPECIES	6	ENSGT00940000158522.m.l	ENSGT00940000159283.c.a.d	ENSGT00950000182919.B.a.h.c	ENSGT00400000025005	ENSGT00940000157485.t	ENSGT00390000009042.g	ENSGT00390000008281.e	ENSGT00390000010118.c.b	ENSGT00940000165143.a.b.p.b.b	ENSGT00530000063721.A.j	ENSGT00930000151026.u.a	ENSGT00730000110871.a.a.a.a.gb	ENSGT00940000163581.f.b.k.a	ENSGT00940000162584.i.b.a	ENSGT00940000163253.a.a.b	ENSGT00940000156500.r #22	ENSGT00950000183051.a.a.a.d #26	ENSGT00940000161408.c	ENSGT00950000182966.A.a.b.a.h.c.a	ENSGT00530000064067.o	ENSGT00390000002390.b.f.b	ENSGT00940000159463.n.b.a	ENSGT00940000159463.n.b.b.b	ENSGT00530000064067.p	ENSGT00390000002390.b.f.a	ENSGT00940000159463.n.b.b.a	ENSGT00940000157343.a.a.n	ENSGT00940000154870.A.b.c	ENSGT00730000111394.f	ENSGT00940000164158.A.b.d	ENSGT00390000014273.b.l
Coho salmon	MODERN SPECIES	5	ENSOKIG00005023361	ENSOKIG00005023353	HDGF (ENSOKIG00005023320)	prcc (ENSOKIG00005023266)	mrpl9 (ENSOKIG00005021682)	si:dkey-266f7.9 (ENSOKIG00005021669)	ENSOKIG00005021658	krit1 (ENSOKIG00005021520)	cyp51 (ENSOKIG00005021176)	ENSOKIG00005020995	ENSOKIG00005020815	FZD1 (ENSOKIG00005020807)	ENSOKIG00005020786	ENSOKIG00005020716	ENSOKIG00005020698	cndp2 (ENSOKIG00005018519) #22	TSHZ1 (ENSOKIG00005018405) #26	znf516 (ENSOKIG00005018381)	ENSOKIG00005018369	ENSOKIG00005018333	ENSOKIG00005018329	ENSOKIG00005018322	msto1 (ENSOKIG00005018277)	tmem79a (ENSOKIG00005018262)	MEF2D (ENSOKIG00005018167)	ENSOKIG00005018124	ENSOKIG00005018084	s100v2 (ENSOKIG00005018051)	prf1.2 (ENSOKIG00005018035)	ENSOKIG00005018031	zgc:64022 (ENSOKIG00005018006)
Chinook salmon	MODERN SPECIES	24	thbs3b (ENSOTSG00005041370)	MTX1 (ENSOTSG00005041651)	ENSOTSG00005041652	HDGF (ENSOTSG00005041653)	prcc (ENSOTSG00005041654)	mrpl9 (ENSOTSG00005041655)	si:dkey-266f7.9 (ENSOTSG00005041667)	rpz2 (ENSOTSG00005041778)	krit1 (ENSOTSG00005041675)	CYP51A1 (ENSOTSG00005041779)	ENSOTSG00005041800	ENSOTSG00005041814	ENSOTSG00005041815	fzd1 (ENSOTSG00005041816)	ENSOTSG00005041817	ENSOTSG00005041819 #22	bgnb (ENSOTSG00005041823)	B4GALT3 (ENSOTSG00005041856)	atp6ap1lb (ENSOTSG00005041858)	ddx20 (ENSOTSG00005041859)	tshz1 (ENSOTSG00005041902) #26	znf516 (ENSOTSG00005041903)	ENSOTSG00005041905	ENSOTSG00005041906	ENSOTSG00005041907	ENSOTSG00005041909	msto1 (ENSOTSG00005041924)	ENSOTSG00005041925	ENSOTSG00005041926	mef2d (ENSOTSG00005041929)	BCAN (ENSOTSG00005041932)
Rainbow trout	MODERN SPECIES	24	ENSOMYG00000072203	ENSOMYG00000004618	ENSOMYG00000004640	KRIT1 (ENSOMYG00000004769)	cyp51 (ENSOMYG00000005467)	ENSOMYG00000006219	ENSOMYG00000076980	ENSOMYG00000006395	ENSOMYG00000061973	ENSOMYG00000006430	ENSOMYG00000006446	ENSOMYG00000006600	ENSOMYG00000074405	ENSOMYG00000006859	ENSOMYG00000070233	cndp2 (ENSOMYG00000007904) #22	ENSOMYG00000008624 #26	ENSOMYG00000052299	znf516 (ENSOMYG00000008662)	ENSOMYG00000008696	ENSOMYG00000075050	ENSOMYG00000008771	ENSOMYG00000076517	ENSOMYG00000008814	ENSOMYG00000008838	ENSOMYG00000008940	ENSOMYG00000053048	ENSOMYG00000048142	ENSOMYG00000009093	s100v2 (ENSOMYG00000009173)	s100v2 (ENSOMYG00000060442)
Huchen	MODERN SPECIES	92															ENSHHUG00000045690	cndp2 (ENSHHUG00000045701) #22	tshz1 (ENSHHUG00000046058) #26	znf516 (ENSHHUG00000046060)	ENSHHUG00000046069	ENSHHUG00000046080	ENSHHUG00000046085	msto1 (ENSHHUG00000046094)	tmem79a (ENSHHUG00000046105)	mef2d (ENSHHUG00000046107)	BCAN (ENSHHUG00000046132)	mrpl24 (ENSHHUG00000046140)	ENSHHUG00000046146	s100v2 (ENSHHUG00000046157)	ENSHHUG00000046167	prf1.2 (ENSHHUG00000046169)	ENSHHUG00000046171
Northern pike	MODERN SPECIES	9	thbs3b (ENSELUG00000014052)	mtx1b (ENSELUG00000014089)	ENSELUG00000014129	HDGF (ENSELUG00000014191)	prcc (ENSELUG00000014219)	mrpl9 (ENSELUG00000014367)	si:dkey-266f7.9 (ENSELUG00000014390)	rpz2 (ENSELUG00000014409)	krit1 (ENSELUG00000014458)	cyp51 (ENSELUG00000014507)	ENSELUG00000014810	MTERF1 (ENSELUG00000014952)	fzd1 (ENSELUG00000014962)	dus3l (ENSELUG00000015033)	ENSELUG00000015068	cndp2 (ENSELUG00000015151) #22	tshz1 (ENSELUG00000015181) #26	znf516 (ENSELUG00000015215)	ENSELUG00000015230	ENSELUG00000015242	msto1 (ENSELUG00000015313)	tmem79a (ENSELUG00000015337)	mef2d (ENSELUG00000015462)	ENSELUG00000015530	mrpl24 (ENSELUG00000015553)	ENSELUG00000015584	s100v2 (ENSELUG00000028491)	thap7 (ENSELUG00000015639)	ENSELUG00000015673	zgc:64022 (ENSELUG00000015708)	pex11b (ENSELUG00000025708)
Osteoglossiformes	ANCESTRAL SPECIES	253													ENSGT00940000157640.a	ENSGT00550000075134	ENSGT00940000163253.a.a.b	ENSGT00940000156500 #22	ENSGT00950000183051.a.a.a #26	ENSGT00940000160839.r #28	ENSGT00940000156787 #30	ENSGT00940000157017.b	ENSGT00940000159356.a.a.h #33	ENSGT00940000157071 #34	ENSGT00940000157616.j.a	ENSGT00390000003774.a.a.c	ENSGT00390000003774.b	ENSGT00400000024940	ENSGT00390000009358	ENSGT00940000162855.a.b	ENSGT00940000162855.a.a.a.b	ENSGT00940000159194.d	ENSGT00390000002661.b.vb
P. kingsleyae	MODERN SPECIES	237										MTERF1 (ENSPKIG00000017849)	FZD1 (ENSPKIG00000017862)	cdk14 (ENSPKIG00000017912)	ENSPKIG00000017998	dus3l (ENSPKIG00000018035)	ENSPKIG00000018091	cndp2 (ENSPKIG00000018114) #22	tshz1 (ENSPKIG00000018129) #26	ENSPKIG00000018138 #28	ZNF236 (ENSPKIG00000018168) #30	ENSPKIG00000018219 #31	ENSPKIG00000018241	SALL3 (ENSPKIG00000018271) #33	atp9b (ENSPKIG00000018339) #34	ENSPKIG00000018366	SOX9 (ENSPKIG00000018387)	ENSPKIG00000018413
Asian bonytongue	MODERN SPECIES	15	eif3ha (ENSSFOG00015009193)	trps1 (ENSSFOG00015009142)	ENSSFOG00015009120	CSMD3 (ENSSFOG00015008801)	gatad1 (ENSSFOG00015008239)	ANKIB1 (ENSSFOG00015008273)	krit1 (ENSSFOG00015008334)	cyp51 (ENSSFOG00015008396)	ENSSFOG00015008521	ENSSFOG00015031317	MTERF1 (ENSSFOG00015008650)	FZD1 (ENSSFOG00015008660)	cdk14 (ENSSFOG00015008700)	dus3l (ENSSFOG00015008797)	ENSSFOG00015008859	cndp2 (ENSSFOG00015008900) #22	tshz1 (ENSSFOG00015008951) #26	ZNF516 (ENSSFOG00015008969) #28	ZNF236 (ENSSFOG00015008994) #30	ENSSFOG00015030865	ENSSFOG00015032768 #31	ENSSFOG00015009133	SALL3 (ENSSFOG00015009159) #33	atp9b (ENSSFOG00015009257) #34	nfatc1 (ENSSFOG00015009385)	ENSSFOG00015009428	slc52a2 (ENSSFOG00015009452)	ENSSFOG00015009493	ENSSFOG00015009500	ENSSFOG00015009518	pleca (ENSSFOG00015009542)
Spotted gar	MODERN SPECIES	649	CSPG5 (ENSLOCG00000004381)	ELP6 (ENSLOCG00000004361)	ENSLOCG00000004346	ENSLOCG00000004337	ptpn23a (ENSLOCG00000004316)	ENSLOCG00000004298	ENSLOCG00000004279	ENSLOCG00000018326	cpvl (ENSLOCG00000004266)	vars1 (ENSLOCG00000004240)	ENSLOCG00000004226	ENSLOCG00000004196	snrnp48 (ENSLOCG00000004187)	ENSLOCG00000004159	ENSLOCG00000004141	cndp2 (ENSLOCG00000004123) #22	cndp1 (ENSLOCG00000004094)	CNDP1 (ENSLOCG00000004060) #23	ZNF407 (ENSLOCG00000004046) #24	PTGR3 (ENSLOCG00000004028) #25	tshz1 (ENSLOCG00000004005) #26	ZNF516 (ENSLOCG00000003974) #28	ZNF236 (ENSLOCG00000003926) #30	MBP (ENSLOCG00000003900) #31	GALR1 (ENSLOCG00000003878) #32	ENSLOCG00000003865	kcnk9 (ENSLOCG00000003851)	ENSLOCG00000003807	ENSLOCG00000018325	ENSLOCG00000003777	FAM135B (ENSLOCG00000003757)
Reedfish	MODERN SPECIES	4	laptm4b (ENSECRG00000021265)	MATN2 (ENSECRG00000021239)	rpl30 (ENSECRG00000021220)	ENSECRG00000021204	ccdc127a (ENSECRG00000021187)	sdha (ENSECRG00000021166)	ENSECRG00000021150	ENSECRG00000021143	mrpl32 (ENSECRG00000021136)	psma2b (ENSECRG00000021101)	wdyhv1 (ENSECRG00000021075)	ATAD2 (ENSECRG00000021029)	ENSECRG00000021000	ENSECRG00000020987	ENSECRG00000020970	cndp2 (ENSECRG00000020940) #22	cndp1 (ENSECRG00000020772)	CNDP1 (ENSECRG00000020687) #23	ENSECRG00000020651 #24	ENSECRG00000020638	PTGR3 (ENSECRG00000020615) #25	tshz1 (ENSECRG00000020602) #26	ZNF516 (ENSECRG00000020570) #28	ZNF236 (ENSECRG00000020468) #30	MBP (ENSECRG00000020435) #31	SALL3 (ENSECRG00000020420) #33	ENSECRG00000020408	atp9b (ENSECRG00000020120) #34	nfatc1 (ENSECRG00000019663)	ctdp1 (ENSECRG00000019575)	KCNG2 (ENSECRG00000019556)
Elephant shark	MODERN SPECIES	1590					LRRCC1 (ENSCMIG00000010117)	e2f5 (ENSCMIG00000010101)	rbis (ENSCMIG00000010099)	CA2 (ENSCMIG00000010094)	ENSCMIG00000010092	ENSCMIG00000010091	ext1b (ENSCMIG00000010064)	MED30 (ENSCMIG00000010058)	ENSCMIG00000010056	ENSCMIG00000010055 #20	dipk1c (ENSCMIG00000010053) #21	cndp2 (ENSCMIG00000009876) #22	ENSCMIG00000009818	fzd6 (ENSCMIG00000009778)	cthrc1a (ENSCMIG00000009775)	slc25a32a (ENSCMIG00000009774)	dcaf13 (ENSCMIG00000009746)	ENSCMIG00000009735	RIMS2 (ENSCMIG00000009496)	ENSCMIG00000009401	dpys (ENSCMIG00000009389)	lrp12 (ENSCMIG00000009388)	ENSCMIG00000009387	mettl18 (ENSCMIG00000009386)	cpne3 (ENSCMIG00000009348)	ENSCMIG00000009282	CNGB3 (ENSCMIG00000009258)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000156500 #22
Lamprey	DUPLICATION
Lamprey	MODERN SPECIES	256												sptssb (ENSPMAG00000006019)	ENSPMAG00000006024	ENSPMAG00000006029	ENSPMAG00000006039	cndp2 (ENSPMAG00000006082) #22	ENSPMAG00000006146	ENSPMAG00000006150	ENSPMAG00000006152	eif2s2 (ENSPMAG00000006179)	pabpn1 (ENSPMAG00000006212)	rprd1b (ENSPMAG00000006231)	ENSPMAG00000006265	si:ch211-122f10.4 (ENSPMAG00000006278)
Lamprey	MODERN SPECIES	2254																ENSPMAG00000009028 #22
Hagfish	MODERN SPECIES	1345	ap1g1 (ENSEBUG00000010200)	ENSEBUG00000004980	ENSEBUG00000009075	ENSEBUG00000005149	ENSEBUG00000016155	ENSEBUG00000004430	NOB1 (ENSEBUG00000004464)	PCK2 (ENSEBUG00000003849)	ENSEBUG00000001226	pepd (ENSEBUG00000017083)	aqp4 (ENSEBUG00000015550)	ENSEBUG00000007986	ENSEBUG00000002704	ENSEBUG00000002177	ENSEBUG00000008519	cndp2 (ENSEBUG00000004119) #22	ENSEBUG00000007315	ENSEBUG00000012786	bcas2 (ENSEBUG00000012820)	ENSEBUG00000012669	ENSEBUG00000005901	ENSEBUG00000016145	ENSEBUG00000013900
Ciona	ANCESTRAL SPECIES																	ENSGT00940000156500 #22
Ciona savignyi	MODERN SPECIES	82	ENSCSAVG00000011568	ENSCSAVG00000011569	ENSCSAVG00000011570	ENSCSAVG00000011571	ENSCSAVG00000011572	ENSCSAVG00000011573	ENSCSAVG00000011574	ENSCSAVG00000011575	ENSCSAVG00000011576	ENSCSAVG00000011577	ENSCSAVG00000011578	ENSCSAVG00000011580	ENSCSAVG00000011581	ENSCSAVG00000011583	ENSCSAVG00000011586	ENSCSAVG00000011626 #22	ENSCSAVG00000011638	ENSCSAVG00000011641	ENSCSAVG00000011642	ENSCSAVG00000011644	ENSCSAVG00000011645	ENSCSAVG00000011646	ENSCSAVG00000011647	ENSCSAVG00000011649	ENSCSAVG00000011650	ENSCSAVG00000011651	ENSCSAVG00000011652	ENSCSAVG00000011653	ENSCSAVG00000011654	ENSCSAVG00000011655	ENSCSAVG00000011656
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00940000156500 #22
Fruitfly	MODERN SPECIES	17	IFT20 (FBgn0050441)	COX4L (FBgn0033020)	CG10417 (FBgn0033021)	stw (FBgn0286203)	CG30440 (FBgn0050440)	Ugt50B3 (FBgn0050438)	TpnC4 (FBgn0033027)	Fis1 (FBgn0039969)	CG17508 (FBgn0039970)	hrm (FBgn0033028)	CG1344 (FBgn0027507)	Not3 (FBgn0033029)	CG8245 (FBgn0033031)	kune (FBgn0033032)	scaf (FBgn0033033)	Cndp2 (FBgn0287767) #22	vlc (FBgn0259978)	ap (FBgn0267978)	l(2)09851 (FBgn0022288)	CG34200 (FBgn0085229)	CG7791 (FBgn0033038)	Gp210 (FBgn0266580)	ZnT41F (FBgn0025693)	Or42a (FBgn0033041)	Tsp42A (FBgn0033042)	Or42b (FBgn0033043)	dpr12 (FBgn0085414)	CG44438 (FBgn0265631)	CG43366 (FBgn0263109)	CG7882 (FBgn0033047)	CG7881 (FBgn0033048)