Gnathostomata	ANCESTRAL SPECIES	471															ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000001754	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28
Euteleostomi	ANCESTRAL SPECIES		ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000009871	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00730000111999	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00950000182810.B.b	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581
Sarcopterygii	ANCESTRAL SPECIES	747																ENSGT00940000157429 #22	ENSGT00730000111999	ENSGT00950000182932.B #25
Tetrapoda	ANCESTRAL SPECIES	3	ENSGT00940000161151	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00390000011904 #29	ENSGT00940000159015 #28	ENSGT00910000148102	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422
Amniota	ANCESTRAL SPECIES	2	ENSGT00940000161151	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Mammalia	ANCESTRAL SPECIES	1	ENSGT00940000161151	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Theria	ANCESTRAL SPECIES	6	ENSGT00510000047107.B	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Eutheria	ANCESTRAL SPECIES	2	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422
Euarchontoglires	ANCESTRAL SPECIES	9	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422
Euarchontoglires_A	ANCESTRAL SPECIES	9	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Glires	ANCESTRAL SPECIES	8	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Rodentia	ANCESTRAL SPECIES	13	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Rodentia_A	ANCESTRAL SPECIES	20	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Sciuridae	ANCESTRAL SPECIES	19	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Eurasian red squirrel	MODERN SPECIES	18	IDUA (ENSSVLG00005012525) #7	FGFRL1 (ENSSVLG00005012435) #8	ENSSVLG00005012104 #9	SPON2 (ENSSVLG00005012045) #10	CTBP1 (ENSSVLG00005011900) #11	ENSSVLG00005011867 #12	MAEA (ENSSVLG00005011623) #13	UVSSA (ENSSVLG00005011273) #14	NKX1-1 (ENSSVLG00005011200) #15	FAM53A (ENSSVLG00005011171) #16	SLBP (ENSSVLG00005010930) #17	TMEM129 (ENSSVLG00005010840) #18	TACC3 (ENSSVLG00005010736) #19	FGFR3 (ENSSVLG00005018602) #20	ENSSVLG00005018420 #21	NSD2 (ENSSVLG00005018333) #22	NELFA (ENSSVLG00005018189) #23	C4orf48 (ENSSVLG00005018142) #24	NAT8L (ENSSVLG00005018097) #25	ENSSVLG00005018048 #26	ENSSVLG00005018005 #27	POLN (ENSSVLG00005017739) #28	HAUS3 (ENSSVLG00005017655) #29	MXD4 (ENSSVLG00005017609) #30	ENSSVLG00005017576 #31	ENSSVLG00005017470 #32	CFAP99 (ENSSVLG00005017288) #33	RNF4 (ENSSVLG00005017190) #34	FAM193A (ENSSVLG00005016851) #35	TNIP2 (ENSSVLG00005016767) #36	SH3BP2 (ENSSVLG00005016520) #37
Marmotini	ANCESTRAL SPECIES	26	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318.o #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Marmotini_b	ANCESTRAL SPECIES	33	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318.o #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Arctic ground squirrel	MODERN SPECIES	759											FAM53A (ENSUPAG00010002811) #16	ENSUPAG00010002700 #17	TACC3 (ENSUPAG00010002681) #19	FGFR3 (ENSUPAG00010002175) #20	ENSUPAG00010002097 #21	NSD2 (ENSUPAG00010001901) #22	NELFA (ENSUPAG00010001867) #23	C4orf48 (ENSUPAG00010001846) #24	NAT8L (ENSUPAG00010001835) #25
Squirrel	MODERN SPECIES	77	IDUA (ENSSTOG00000006937) #7	FGFRL1 (ENSSTOG00000022392) #8	ENSSTOG00000031016	ENSSTOG00000028967 #9	SPON2 (ENSSTOG00000025443) #10	CTBP1 (ENSSTOG00000005891) #11	MAEA (ENSSTOG00000005706) #13	UVSSA (ENSSTOG00000005729) #14	ENSSTOG00000031320 #15	FAM53A (ENSSTOG00000023406) #16	SLBP (ENSSTOG00000003262) #17	TMEM129 (ENSSTOG00000020817) #18	TACC3 (ENSSTOG00000012665) #19	FGFR3 (ENSSTOG00000000815) #20	LETM1 (ENSSTOG00000014167) #21	NSD2 (ENSSTOG00000003369) #22	NELFA (ENSSTOG00000003421) #23	ENSSTOG00000024159 #25	POLN (ENSSTOG00000001059) #28	HAUS3 (ENSSTOG00000020375) #29	MXD4 (ENSSTOG00000028770) #30	ZFYVE28 (ENSSTOG00000012220) #31	CFAP99 (ENSSTOG00000032892) #33	ENSSTOG00000011101 #34	FAM193A (ENSSTOG00000007426) #35	TNIP2 (ENSSTOG00000007444) #36	SH3BP2 (ENSSTOG00000028939) #37	ADD1 (ENSSTOG00000009726)	ENSSTOG00000025349	NOP14 (ENSSTOG00000009739)	GRK4 (ENSSTOG00000009753)
Alpin marmot	MODERN SPECIES	9	TMEM175 (ENSMMMG00000008703)	SLC26A1 (ENSMMMG00000008883)	IDUA (ENSMMMG00000008893) #7	ENSMMMG00000009027	ENSMMMG00000009060 #9	SPON2 (ENSMMMG00000009081) #10	CTBP1 (ENSMMMG00000009094) #11	MAEA (ENSMMMG00000009131) #13	UVSSA (ENSMMMG00000009148) #14	FAM53A (ENSMMMG00000009208) #16	SLBP (ENSMMMG00000009227) #17	TMEM129 (ENSMMMG00000009228) #18	TACC3 (ENSMMMG00000009234) #19	FGFR3 (ENSMMMG00000009271) #20	ENSMMMG00000010030 #21	NSD2 (ENSMMMG00000010052) #22	NELFA (ENSMMMG00000010244) #23	ENSMMMG00000010260 #25	POLN (ENSMMMG00000010281) #28	HAUS3 (ENSMMMG00000010462) #29	MXD4 (ENSMMMG00000010466) #30	ZFYVE28 (ENSMMMG00000010480) #31	CFAP99 (ENSMMMG00000010512) #33	RNF4 (ENSMMMG00000010533) #34	FAM193A (ENSMMMG00000010560) #35	TNIP2 (ENSMMMG00000010616) #36	SH3BP2 (ENSMMMG00000010638) #37	ADD1 (ENSMMMG00000010678)	ENSMMMG00000012548	NOP14 (ENSMMMG00000012574)	GRK4 (ENSMMMG00000012594)
Hystricomorpha	ANCESTRAL SPECIES	26	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043.f #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00940000164052	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422
Hystricomorpha_a	ANCESTRAL SPECIES	23	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043.f #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00940000164052	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Hystricomorpha_b	ANCESTRAL SPECIES	37	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043.f #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00940000164052	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Long-tailed chinchilla	MODERN SPECIES	221	IDUA (ENSCLAG00000011871) #7	FGFRL1 (ENSCLAG00000007552) #8	ENSCLAG00000008587	ENSCLAG00000010654 #9	SPON2 (ENSCLAG00000006806) #10	CTBP1 (ENSCLAG00000008653) #11	MAEA (ENSCLAG00000013403) #13	UVSSA (ENSCLAG00000008812) #14	ENSCLAG00000007213 #15	FAM53A (ENSCLAG00000007294) #16	SLBP (ENSCLAG00000008157) #17	TMEM129 (ENSCLAG00000010127) #18	TACC3 (ENSCLAG00000011683) #19	FGFR3 (ENSCLAG00000006986) #20	LETM1 (ENSCLAG00000010785) #21	NSD2 (ENSCLAG00000014450) #22	NELFA (ENSCLAG00000012299) #23	C4orf48 (ENSCLAG00000009344) #24	ENSCLAG00000009488 #25	POLN (ENSCLAG00000010355) #28	HAUS3 (ENSCLAG00000010866) #29	MXD4 (ENSCLAG00000011445) #30	ZFYVE28 (ENSCLAG00000009540) #31	CFAP99 (ENSCLAG00000012930) #33	RNF4 (ENSCLAG00000014072) #34	FAM193A (ENSCLAG00000014296) #35	ENSCLAG00000006931	SH3BP2 (ENSCLAG00000008009) #37	ADD1 (ENSCLAG00000011442)	ENSCLAG00000011338	NOP14 (ENSCLAG00000008622)
Degu	MODERN SPECIES	47	IDUA (ENSODEG00000012062) #7	FGFRL1 (ENSODEG00000011612) #8	ENSODEG00000012265	ENSODEG00000012726 #9	SPON2 (ENSODEG00000012066) #10	ENSODEG00000013011 #11	MAEA (ENSODEG00000012556) #13	UVSSA (ENSODEG00000011757) #14	FAM53A (ENSODEG00000011180) #16	ENSODEG00000012272	SLBP (ENSODEG00000012641) #17	ENSODEG00000011155 #18	ENSODEG00000012973 #19	ENSODEG00000012582 #20	LETM1 (ENSODEG00000012866) #21	NSD2 (ENSODEG00000012080) #22	NELFA (ENSODEG00000011122) #23	C4orf48 (ENSODEG00000011093) #24	ENSODEG00000011723 #25	ENSODEG00000011259	POLN (ENSODEG00000011265) #28	HAUS3 (ENSODEG00000011986) #29	MXD4 (ENSODEG00000011512) #30	ENSODEG00000011568 #31	CFAP99 (ENSODEG00000011882) #33	RNF4 (ENSODEG00000011133) #34	ENSODEG00000010562	FAM193A (ENSODEG00000010949) #35	ENSODEG00000010959	SH3BP2 (ENSODEG00000011814) #37	ADD1 (ENSODEG00000010953)
Guinea pig	MODERN SPECIES	24										FAM53A (ENSCPOG00000033116) #16	SLBP (ENSCPOG00000000031) #17	TMEM129 (ENSCPOG00000000032) #18	TACC3 (ENSCPOG00000023531) #19	FGFR3 (ENSCPOG00000025595) #20	LETM1 (ENSCPOG00000011337) #21	NSD2 (ENSCPOG00000007513) #22	NELFA (ENSCPOG00000019715) #23	C4orf48 (ENSCPOG00000031206) #24	ENSCPOG00000038761 #25	POLN (ENSCPOG00000001665) #28	HAUS3 (ENSCPOG00000021994) #29	MXD4 (ENSCPOG00000022492) #30	ZFYVE28 (ENSCPOG00000027392) #31	CFAP99 (ENSCPOG00000040209) #33	RNF4 (ENSCPOG00000030545) #34	FAM193A (ENSCPOG00000004013) #35	ENSCPOG00000024404	SH3BP2 (ENSCPOG00000009421) #37	ENSCPOG00000031940	TSGA10 (ENSCPOG00000012778)	ENSCPOG00000031612
Rodentia_B	ANCESTRAL SPECIES	19	ENSGT01100000263544.c.a.a.b	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Kangaroo rat	MODERN SPECIES	390	Fgfrl1 (ENSDORG00000016596) #8	ENSDORG00000024007	Tmed11 (ENSDORG00000013022) #9	Spon2 (ENSDORG00000025165) #10	ENSDORG00000024801 #11	Maea (ENSDORG00000007382) #13	Uvssa (ENSDORG00000001679) #14	ENSDORG00000025230	Fam53a (ENSDORG00000005663) #16	Slbp (ENSDORG00000003028) #17	ENSDORG00000003030 #18	ENSDORG00000026325	ENSDORG00000009704 #20	ENSDORG00000025862 #20	Letm1 (ENSDORG00000009706) #21	Nsd2 (ENSDORG00000013095) #22	Nelfa (ENSDORG00000013103) #23	Gm1673 (ENSDORG00000009221) #24	ENSDORG00000012646 #25	Poln (ENSDORG00000012647) #28	Haus3 (ENSDORG00000012649) #29	Mxd4 (ENSDORG00000000173) #30	ENSDORG00000026396 #31	Cfap99 (ENSDORG00000025036) #33	Rnf4 (ENSDORG00000006675) #34	Fam193a (ENSDORG00000016576) #35	ENSDORG00000016577 #36	Sh3bp2 (ENSDORG00000010509) #37	Htt (ENSDORG00000003272)	ENSDORG00000023495	ENSDORG00000001192
Myomorpha	ANCESTRAL SPECIES	19	ENSGT01100000263544.c.a.a.b	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Muroidea	ANCESTRAL SPECIES	17	ENSGT01100000263544.c.a.a.b	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Muroidea_A	ANCESTRAL SPECIES	13	ENSGT00520000055626.a	ENSGT00390000016559	ENSGT01090000260061.c.a.c.b	ENSGT00940000155844	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Cricetidae	ANCESTRAL SPECIES	14	ENSGT00520000055626.a	ENSGT00390000016559	ENSGT01090000260061.c.a.c.b	ENSGT00940000155844	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Cricetinae	ANCESTRAL SPECIES	9	ENSGT00390000016559	ENSGT01090000260061.c.a.c.b	ENSGT00940000155844	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000170970	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Chinese hamster chok1gshd	MODERN SPECIES	44	Ywhah (ENSCGRG00001020682)	Slc5a1 (ENSCGRG00001023507)	Spon2 (ENSCGRG00001018510) #10	Ctbp1 (ENSCGRG00001000660) #11	ENSCGRG00001024773	Maea (ENSCGRG00001001581) #13	Uvssa (ENSCGRG00001002995) #14	Nkx1-1 (ENSCGRG00001013497) #15	Fam53a (ENSCGRG00001022457) #16	ENSCGRG00001009760 #17	Tmem129 (ENSCGRG00001014269) #18	Tacc3 (ENSCGRG00001022858) #19	Fgfr3 (ENSCGRG00001014679) #20	Letm1 (ENSCGRG00001022378) #21	ENSCGRG00001022523	Nsd2 (ENSCGRG00001008668) #22	Nelfa (ENSCGRG00001018745) #23	Gm1673 (ENSCGRG00001020043) #24	Nat8l (ENSCGRG00001023978) #25	Poln (ENSCGRG00001007876) #28	Haus3 (ENSCGRG00001006121) #29	Mxd4 (ENSCGRG00001011783) #30	Zfyve28 (ENSCGRG00001015693) #31	Cfap99 (ENSCGRG00001018964) #33	Rnf4 (ENSCGRG00001022472) #34	Fam193a (ENSCGRG00001011437) #35	Tnip2 (ENSCGRG00001018278) #36	Sh3bp2 (ENSCGRG00001023205) #37	Add1 (ENSCGRG00001008876)	ENSCGRG00001023141	Nop14 (ENSCGRG00001009013)
Golden Hamster	MODERN SPECIES	632	Sfi1 (ENSMAUG00000007963)	ENSMAUG00000002955	Depdc5 (ENSMAUG00000003792)	Slc5a1 (ENSMAUG00000014523)	Spon2 (ENSMAUG00000009554) #10	Ctbp1 (ENSMAUG00000018160) #11	ENSMAUG00000011117	Uvssa (ENSMAUG00000017816) #14	Nkx1-1 (ENSMAUG00000013123) #15	Fam53a (ENSMAUG00000018409) #16	Slbp (ENSMAUG00000009490) #17	Tmem129 (ENSMAUG00000013066) #18	Tacc3 (ENSMAUG00000008651) #19	Fgfr3 (ENSMAUG00000012735) #20	Letm1 (ENSMAUG00000007831) #21	Nsd2 (ENSMAUG00000015700) #22	Nelfa (ENSMAUG00000022097) #23	Gm1673 (ENSMAUG00000019500) #24	ENSMAUG00000020607 #25	Poln (ENSMAUG00000008534) #28	Haus3 (ENSMAUG00000000818) #29	Mxd4 (ENSMAUG00000014477) #30	ENSMAUG00000016411 #31	Cfap99 (ENSMAUG00000018621) #33	Rnf4 (ENSMAUG00000022006) #34	Fam193a (ENSMAUG00000013458) #35	Tnip2 (ENSMAUG00000000863) #36	Sh3bp2 (ENSMAUG00000014154) #37	Add1 (ENSMAUG00000010417)	ENSMAUG00000009757	Nop14 (ENSMAUG00000011891)
Cricetidae_B	ANCESTRAL SPECIES	9	ENSGT00520000055626.a	ENSGT00390000016559	ENSGT01090000260061.c.a.c.b	ENSGT00940000155844	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Northern American deer mouse	MODERN SPECIES	1	Depdc5 (ENSPEMG00000017938)	ENSPEMG00000024597	Slc5a1 (ENSPEMG00000018099)	ENSPEMG00000030935	Spon2 (ENSPEMG00000012059) #10	Ctbp1 (ENSPEMG00000018643) #11	Maea (ENSPEMG00000009131) #13	Uvssa (ENSPEMG00000010756) #14	Nkx1-1 (ENSPEMG00000016893) #15	Fam53a (ENSPEMG00000008959) #16	Slbp (ENSPEMG00000018369) #17	Tmem129 (ENSPEMG00000000690) #18	Tacc3 (ENSPEMG00000012388) #19	Fgfr3 (ENSPEMG00000006894) #20	Letm1 (ENSPEMG00000000609) #21	Nsd2 (ENSPEMG00000017277) #22	Nelfa (ENSPEMG00000016134) #23	Gm1673 (ENSPEMG00000017743) #24	ENSPEMG00000026053 #25	Poln (ENSPEMG00000008981) #28	Mxd4 (ENSPEMG00000015018) #30	Zfyve28 (ENSPEMG00000003088) #31	Cfap99 (ENSPEMG00000000404) #33	Rnf4 (ENSPEMG00000017150) #34	Fam193a (ENSPEMG00000000297) #35	Tnip2 (ENSPEMG00000013340) #36	Sh3bp2 (ENSPEMG00000015767) #37	Add1 (ENSPEMG00000008717)	ENSPEMG00000011931	Nop14 (ENSPEMG00000005399)	Grk4 (ENSPEMG00000003121)
Prairie vole	MODERN SPECIES	89	Pisd (ENSMOCG00000017891)	ENSMOCG00000003569	Depdc5 (ENSMOCG00000013118)	Ywhah (ENSMOCG00000015489)	Spon2 (ENSMOCG00000009741) #10	Ctbp1 (ENSMOCG00000015873) #11	Maea (ENSMOCG00000014476) #13	Uvssa (ENSMOCG00000021608) #14	Nkx1-1 (ENSMOCG00000000592) #15	Fam53a (ENSMOCG00000009866) #16	Slbp (ENSMOCG00000015826) #17	Tmem129 (ENSMOCG00000020389) #18	Tacc3 (ENSMOCG00000008214) #19	Fgfr3 (ENSMOCG00000013655) #20	Letm1 (ENSMOCG00000012830) #21	Nsd2 (ENSMOCG00000008250) #22	Nelfa (ENSMOCG00000000669) #23	Gm1673 (ENSMOCG00000020620) #24	Nat8l (ENSMOCG00000017447) #25	Poln (ENSMOCG00000009309) #28	Pcdh20 (ENSMOCG00000008392)	Tdrd3 (ENSMOCG00000012962)	Diaph3 (ENSMOCG00000012431)	ENSMOCG00000011873	Pcdh17 (ENSMOCG00000004856)	ENSMOCG00000019804	Olfm4 (ENSMOCG00000016963)	Pcdh8 (ENSMOCG00000020531)	Cnmd (ENSMOCG00000001113)	Sugt1 (ENSMOCG00000002097)	Elf1 (ENSMOCG00000000165)
Murinae	ANCESTRAL SPECIES	12	ENSGT00520000055626.a	ENSGT00390000016559	ENSGT01090000260061.c.a.c.b	ENSGT00940000155844	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00940000164295	ENSGT00390000017459
Mus	ANCESTRAL SPECIES	14	ENSGT00390000016559	ENSGT01090000260061.c.a.c.b	ENSGT00940000155844	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00860000135700	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00940000164295	ENSGT00390000017459
Mus_A	ANCESTRAL SPECIES	6	ENSGT00390000016559	ENSGT01090000260061.c.a.c.b	ENSGT00940000155844	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00860000135700	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00940000164295	ENSGT00390000017459
Mus_B	ANCESTRAL SPECIES	4	ENSGT00390000016559	ENSGT01090000260061.c.a.c.b	ENSGT00940000155844	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00860000135700	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00940000164295	ENSGT00390000017459
Mus_C	ANCESTRAL SPECIES	4	ENSGT00390000016559	ENSGT01090000260061.c.a.c.b	ENSGT00940000155844	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00860000135700	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00940000164295	ENSGT00390000017459
Steppe mouse	MODERN SPECIES	3132	Depdc5 (ENSMSIG00000019758)	Ywhah (ENSMSIG00000020077)	Slc5a1 (ENSMSIG00000020102)	Spon2 (ENSMSIG00000020130) #10	ENSMSIG00000020152 #11	Maea (ENSMSIG00000020294) #13	Uvssa (ENSMSIG00000020327) #14	Nkx1-1 (ENSMSIG00000020362) #15	Fam53a (ENSMSIG00000020370) #16	ENSMSIG00000020391	Slbp (ENSMSIG00000020394) #17	Tmem129 (ENSMSIG00000020453) #18	ENSMSIG00000020463 #19	Fgfr3 (ENSMSIG00000020478) #20	Letm1 (ENSMSIG00000020902) #21	Nsd2 (ENSMSIG00000020943) #22	Nelfa (ENSMSIG00000021131) #23	ENSMSIG00000021161 #24	Nat8l (ENSMSIG00000021182) #25	Poln (ENSMSIG00000021195) #28	Haus3 (ENSMSIG00000021389) #29	ENSMSIG00000021408 #30	ENSMSIG00000021448	Zfyve28 (ENSMSIG00000021454) #31	Cfap99 (ENSMSIG00000021491) #33	ENSMSIG00000021509	ENSMSIG00000021525 #34	Fam193a (ENSMSIG00000021548) #35	Tnip2 (ENSMSIG00000021599) #36	Sh3bp2 (ENSMSIG00000021641) #37	Add1 (ENSMSIG00000021740)
spretus	MODERN SPECIES	14	Depdc5 (MGP_SPRETEiJ_G0028103)	Ywhah (MGP_SPRETEiJ_G0028104)	Slc5a1 (MGP_SPRETEiJ_G0028105)	Spon2 (MGP_SPRETEiJ_G0028106) #10	Ctbp1 (MGP_SPRETEiJ_G0028107) #11	Maea (MGP_SPRETEiJ_G0028108) #13	Uvssa (MGP_SPRETEiJ_G0028109) #14	Nkx1-1 (MGP_SPRETEiJ_G0028110) #15	Fam53a (MGP_SPRETEiJ_G0028111) #16	MGP_SPRETEiJ_G0028112	Slbp (MGP_SPRETEiJ_G0028113) #17	Tmem129 (MGP_SPRETEiJ_G0028114) #18	Tacc3 (MGP_SPRETEiJ_G0028115) #19	Fgfr3 (MGP_SPRETEiJ_G0028116) #20	Letm1 (MGP_SPRETEiJ_G0028117) #21	Nsd2 (MGP_SPRETEiJ_G0028118) #22	Nelfa (MGP_SPRETEiJ_G0028119) #23	MGP_SPRETEiJ_G0028120 #24	Nat8l (MGP_SPRETEiJ_G0028121) #25	Poln (MGP_SPRETEiJ_G0028122) #28	Haus3 (MGP_SPRETEiJ_G0028123) #29	Mxd4 (MGP_SPRETEiJ_G0028124) #30	Zfyve28 (MGP_SPRETEiJ_G0028125) #31	Cfap99 (MGP_SPRETEiJ_G0028126) #33	Rnf4 (MGP_SPRETEiJ_G0028127) #34	Fam193a (MGP_SPRETEiJ_G0028128) #35	Tnip2 (MGP_SPRETEiJ_G0028129) #36	Sh3bp2 (MGP_SPRETEiJ_G0028130) #37	Add1 (MGP_SPRETEiJ_G0028131)	Mfsd10 (MGP_SPRETEiJ_G0028132)	Nop14 (MGP_SPRETEiJ_G0028133)
Mouse	MODERN SPECIES	14	Prr14l (ENSMUSG00000054280)	Depdc5 (ENSMUSG00000037426)	Ywhah (ENSMUSG00000018965)	Slc5a1 (ENSMUSG00000011034)	Spon2 (ENSMUSG00000037379) #10	Ctbp1 (ENSMUSG00000037373) #11	Maea (ENSMUSG00000079562) #13	Uvssa (ENSMUSG00000037355) #14	Nkx1-1 (ENSMUSG00000029112) #15	Fam53a (ENSMUSG00000037339) #16	Slbp (ENSMUSG00000004642) #17	Tmem129 (ENSMUSG00000019295) #18	Tacc3 (ENSMUSG00000037313) #19	Fgfr3 (ENSMUSG00000054252) #20	Letm1 (ENSMUSG00000005299) #21	Nsd2 (ENSMUSG00000057406) #22	Nelfa (ENSMUSG00000029111) #23	Gm1673 (ENSMUSG00000070858) #24	Nat8l (ENSMUSG00000048142) #25	Poln (ENSMUSG00000045102) #28	Haus3 (ENSMUSG00000079555) #29	Mxd4 (ENSMUSG00000037235) #30	Zfyve28 (ENSMUSG00000037224) #31	Cfap99 (ENSMUSG00000109572) #33	Rnf4 (ENSMUSG00000029110) #34	Fam193a (ENSMUSG00000037210) #35	Tnip2 (ENSMUSG00000059866) #36	Sh3bp2 (ENSMUSG00000054520) #37	Add1 (ENSMUSG00000029106)	Mfsd10 (ENSMUSG00000001082)	Nop14 (ENSMUSG00000036693)
Ryukyu mouse	MODERN SPECIES	14	Depdc5 (MGP_CAROLIEiJ_G0027107)	MGP_CAROLIEiJ_G0027108	Slc5a1 (MGP_CAROLIEiJ_G0027109)	Spon2 (MGP_CAROLIEiJ_G0027110) #10	Ctbp1 (MGP_CAROLIEiJ_G0027111) #11	Maea (MGP_CAROLIEiJ_G0027112) #13	Uvssa (MGP_CAROLIEiJ_G0027113) #14	Nkx1-1 (MGP_CAROLIEiJ_G0027114) #15	Fam53a (MGP_CAROLIEiJ_G0027115) #16	MGP_CAROLIEiJ_G0027116	Slbp (MGP_CAROLIEiJ_G0027117) #17	Tmem129 (MGP_CAROLIEiJ_G0027118) #18	Tacc3 (MGP_CAROLIEiJ_G0027119) #19	Fgfr3 (MGP_CAROLIEiJ_G0027120) #20	Letm1 (MGP_CAROLIEiJ_G0027121) #21	Nsd2 (MGP_CAROLIEiJ_G0027122) #22	Nelfa (MGP_CAROLIEiJ_G0027123) #23	MGP_CAROLIEiJ_G0027124 #24	Nat8l (MGP_CAROLIEiJ_G0027125) #25	Poln (MGP_CAROLIEiJ_G0027126) #28	Haus3 (MGP_CAROLIEiJ_G0027127) #29	Mxd4 (MGP_CAROLIEiJ_G0027128) #30	Zfyve28 (MGP_CAROLIEiJ_G0027129) #31	Cfap99 (MGP_CAROLIEiJ_G0027130) #33	Rnf4 (MGP_CAROLIEiJ_G0027131) #34	Fam193a (MGP_CAROLIEiJ_G0027132) #35	Tnip2 (MGP_CAROLIEiJ_G0027133) #36	Sh3bp2 (MGP_CAROLIEiJ_G0027134) #37	Add1 (MGP_CAROLIEiJ_G0027135)	Mfsd10 (MGP_CAROLIEiJ_G0027136)	Nop14 (MGP_CAROLIEiJ_G0027137)
Shrew mouse	MODERN SPECIES	4	Depdc5 (MGP_PahariEiJ_G0016891)	Ywhah (MGP_PahariEiJ_G0016892)	Slc5a1 (MGP_PahariEiJ_G0016893)	Spon2 (MGP_PahariEiJ_G0016894) #10	Ctbp1 (MGP_PahariEiJ_G0016895) #11	Maea (MGP_PahariEiJ_G0016896) #13	Uvssa (MGP_PahariEiJ_G0016897) #14	Nkx1-1 (MGP_PahariEiJ_G0016898) #15	Fam53a (MGP_PahariEiJ_G0016899) #16	MGP_PahariEiJ_G0016900	Slbp (MGP_PahariEiJ_G0016901) #17	Tmem129 (MGP_PahariEiJ_G0016902) #18	MGP_PahariEiJ_G0016903 #19	Fgfr3 (MGP_PahariEiJ_G0016904) #20	MGP_PahariEiJ_G0016905	Nsd2 (MGP_PahariEiJ_G0016906) #22	Nelfa (MGP_PahariEiJ_G0016907) #23	MGP_PahariEiJ_G0016908 #24	Nat8l (MGP_PahariEiJ_G0016909) #25	Poln (MGP_PahariEiJ_G0016910) #28	Haus3 (MGP_PahariEiJ_G0016911) #29	Mxd4 (MGP_PahariEiJ_G0016912) #30	Zfyve28 (MGP_PahariEiJ_G0016913) #31	Cfap99 (MGP_PahariEiJ_G0016914) #33	MGP_PahariEiJ_G0016915 #34	Fam193a (MGP_PahariEiJ_G0016916) #35	Tnip2 (MGP_PahariEiJ_G0016917) #36	Sh3bp2 (MGP_PahariEiJ_G0016918) #37	Add1 (MGP_PahariEiJ_G0016919)	Mfsd10 (MGP_PahariEiJ_G0016920)	Nop14 (MGP_PahariEiJ_G0016921)
Rat	MODERN SPECIES	5	LOC100361879 (ENSRNOG00000045749)	Depdc5 (ENSRNOG00000018144)	Ywhah (ENSRNOG00000055471)	Slc5a1 (ENSRNOG00000017775)	Spon2 (ENSRNOG00000006033) #10	Ctbp1 (ENSRNOG00000005428) #11	Maea (ENSRNOG00000005397) #13	Uvssa (ENSRNOG00000005122) #14	Nkx1-1 (ENSRNOG00000005113) #15	Fam53a (ENSRNOG00000017548) #16	Slbp (ENSRNOG00000037162) #17	Tmem129 (ENSRNOG00000017329) #18	Tacc3 (ENSRNOG00000017259) #19	Fgfr3 (ENSRNOG00000016818) #20	Letm1 (ENSRNOG00000016427) #21	Nsd2 (ENSRNOG00000038140) #22	Nelfa (ENSRNOG00000015474) #23	RGD1560394 (ENSRNOG00000065022) #24	Nat8l (ENSRNOG00000049351) #25	Poln (ENSRNOG00000069005) #28	Mxd4 (ENSRNOG00000015033) #30	Zfyve28 (ENSRNOG00000014874) #31	Cfap99 (ENSRNOG00000058434) #33	Rnf4 (ENSRNOG00000013930) #34	Fam193a (ENSRNOG00000013832) #35	Tnip2 (ENSRNOG00000013805) #36	Sh3bp2 (ENSRNOG00000013747) #37	Add1 (ENSRNOG00000013039)	Mfsd10 (ENSRNOG00000012534)	Nop14 (ENSRNOG00000012147)	Grk4 (ENSRNOG00000011847)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1177	Slc26a1 (ENSNGAG00000019448)	ENSNGAG00000019399 #8	Rnf212 (ENSNGAG00000019964)	Tmed11 (ENSNGAG00000003592) #9	Spon2 (ENSNGAG00000007051) #10	Ctbp1 (ENSNGAG00000010894) #11	Maea (ENSNGAG00000002281) #13	Uvssa (ENSNGAG00000012000) #14	Nkx1-1 (ENSNGAG00000013945) #15	ENSNGAG00000015315	Slbp (ENSNGAG00000020799) #17	Tmem129 (ENSNGAG00000017856) #18	Tacc3 (ENSNGAG00000017862) #19	Fgfr3 (ENSNGAG00000015713) #20	Letm1 (ENSNGAG00000000720) #21	Nsd2 (ENSNGAG00000010171) #22	Nelfa (ENSNGAG00000023963) #23	ENSNGAG00000014727	Gm1673 (ENSNGAG00000023348) #24	ENSNGAG00000002900 #25	Poln (ENSNGAG00000022997) #28	Haus3 (ENSNGAG00000014413) #29	Mxd4 (ENSNGAG00000016526) #30	ENSNGAG00000014521 #31	Cfap99 (ENSNGAG00000020586) #33	Rnf4 (ENSNGAG00000018375) #34	Fam193a (ENSNGAG00000021458) #35	Tnip2 (ENSNGAG00000020375) #36	Sh3bp2 (ENSNGAG00000018119) #37	Add1 (ENSNGAG00000013896)	ENSNGAG00000004792
Lesser Egyptian jerboa	MODERN SPECIES	58	ENSJJAG00000022256	Rnf212 (ENSJJAG00000023907)	Tmed11 (ENSJJAG00000021956) #9	Spon2 (ENSJJAG00000010729) #10	Ctbp1 (ENSJJAG00000022277) #11	Maea (ENSJJAG00000018909) #13	Uvssa (ENSJJAG00000000552) #14	Nkx1-1 (ENSJJAG00000017578) #15	ENSJJAG00000022694	ENSJJAG00000019010	ENSJJAG00000020549 #17	ENSJJAG00000015175 #18	Tacc3 (ENSJJAG00000015964) #19	Fgfr3 (ENSJJAG00000001873) #20	Letm1 (ENSJJAG00000024090) #21	Nsd2 (ENSJJAG00000012992) #22	Nelfa (ENSJJAG00000024237) #23	Gm1673 (ENSJJAG00000006076) #24	Nat8l (ENSJJAG00000024226) #25	Poln (ENSJJAG00000012540) #28	Haus3 (ENSJJAG00000013628) #29	ENSJJAG00000017036 #30	ENSJJAG00000000555 #31	Cfap99 (ENSJJAG00000019360) #33	ENSJJAG00000014107 #34	ENSJJAG00000000617	Fam193a (ENSJJAG00000013646) #35	Tnip2 (ENSJJAG00000021336) #36	Sh3bp2 (ENSJJAG00000022545) #37	Add1 (ENSJJAG00000011333)	ENSJJAG00000019357
Lagomorpha	ANCESTRAL SPECIES	187																ENSGT00940000157429 #22	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00390000017459	ENSGT00940000160151	ENSGT00390000015863	ENSGT00390000002245
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	529																ENSOCUG00000033780 #22	ENSOCUG00000005245 #22	ENSOCUG00000027729 #25	POLN (ENSOCUG00000005626) #28	HAUS3 (ENSOCUG00000021362) #29	MXD4 (ENSOCUG00000005063) #30	ENSOCUG00000004377 #31	ENSOCUG00000033870	CFAP99 (ENSOCUG00000036986) #33	ENSOCUG00000004998 #34	FAM193A (ENSOCUG00000017730) #35	TNIP2 (ENSOCUG00000010033) #36	SH3BP2 (ENSOCUG00000000161) #37	ADD1 (ENSOCUG00000024333)	NOP14 (ENSOCUG00000004725)	GRK4 (ENSOCUG00000005838)
Rabbit	MODERN SPECIES	529															ENSOCUG00000033780 #22	ENSOCUG00000005245 #22	ENSOCUG00000027729 #25	POLN (ENSOCUG00000005626) #28	HAUS3 (ENSOCUG00000021362) #29	MXD4 (ENSOCUG00000005063) #30	ENSOCUG00000004377 #31	ENSOCUG00000033870	CFAP99 (ENSOCUG00000036986) #33	ENSOCUG00000004998 #34	FAM193A (ENSOCUG00000017730) #35	TNIP2 (ENSOCUG00000010033) #36	SH3BP2 (ENSOCUG00000000161) #37	ADD1 (ENSOCUG00000024333)	NOP14 (ENSOCUG00000004725)	GRK4 (ENSOCUG00000005838)	HTT (ENSOCUG00000009805)
Pika	MODERN SPECIES	178																ENSOPRG00000002707 #22
Tree shrew	MODERN SPECIES	310																NSD2 (ENSTBEG00000013959) #22	NELFA (ENSTBEG00000014722) #23
Primates	ANCESTRAL SPECIES	10	ENSGT01100000263544.c.a.a.b	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422
Haplorrhini	ANCESTRAL SPECIES	23	ENSGT01100000263544.c.a.a.b	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422
Simiiformes	ANCESTRAL SPECIES	10	ENSGT01100000263544.c.a.a.b	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422
Catarrhini	ANCESTRAL SPECIES	14	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00910000147922	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00650000094590	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581
Hominoidea	ANCESTRAL SPECIES	10	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00910000147922	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00910000148485	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a.i #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00650000094590	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318.u #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581
Hominidae	ANCESTRAL SPECIES	12	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00910000147922	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00910000148485	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a.i #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00650000094590	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318.u #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	11	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00910000147922	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00910000148485	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a.i #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00650000094590	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318.u #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00940000164295
Homo/Pan group	ANCESTRAL SPECIES	10	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00910000147922	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00910000148485	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a.i #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00650000094590	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318.u #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00940000164295
Pan	ANCESTRAL SPECIES	7	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00910000147922	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00910000148485	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a.i #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00650000094590	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318.u #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00940000164295
Chimpanzee	MODERN SPECIES	17	FGFRL1 (ENSPTRG00000049998) #8	RNF212 (ENSPTRG00000015822)	ENSPTRG00000045674 #9	SPON2 (ENSPTRG00000015825) #10	CTBP1 (ENSPTRG00000015827) #11	ENSPTRG00000049092	MAEA (ENSPTRG00000015829) #13	UVSSA (ENSPTRG00000015830) #14	NKX1-1 (ENSPTRG00000041220) #15	FAM53A (ENSPTRG00000015831) #16	SLBP (ENSPTRG00000015832) #17	TMEM129 (ENSPTRG00000015833) #18	TACC3 (ENSPTRG00000015834) #19	FGFR3 (ENSPTRG00000015836) #20	LETM1 (ENSPTRG00000015837) #21	NSD2 (ENSPTRG00000015838) #22	NELFA (ENSPTRG00000015840) #23	C4H4orf48 (ENSPTRG00000031284) #24	NAT8L (ENSPTRG00000047587) #25	POLN (ENSPTRG00000034296) #28	ENSPTRG00000052565	HAUS3 (ENSPTRG00000015843) #29	MXD4 (ENSPTRG00000015844) #30	ZFYVE28 (ENSPTRG00000015845) #31	CFAP99 (ENSPTRG00000039939) #33	RNF4 (ENSPTRG00000046370) #34	FAM193A (ENSPTRG00000015847) #35	TNIP2 (ENSPTRG00000015848) #36	SH3BP2 (ENSPTRG00000046864) #37	ADD1 (ENSPTRG00000015850)	MFSD10 (ENSPTRG00000015851)
Bonobo	MODERN SPECIES	17	FGFRL1 (ENSPPAG00000033720) #8	RNF212 (ENSPPAG00000043537)	ENSPPAG00000033770 #9	SPON2 (ENSPPAG00000038791) #10	CTBP1 (ENSPPAG00000032870) #11	ENSPPAG00000016070	ENSPPAG00000017524 #13	UVSSA (ENSPPAG00000039158) #14	FAM53A (ENSPPAG00000001687) #16	SLBP (ENSPPAG00000033300) #17	TMEM129 (ENSPPAG00000032640) #18	TACC3 (ENSPPAG00000041213) #19	ENSPPAG00000039682	FGFR3 (ENSPPAG00000034154) #20	LETM1 (ENSPPAG00000022259) #21	NSD2 (ENSPPAG00000028888) #22	NELFA (ENSPPAG00000039571) #23	ENSPPAG00000040365 #24	ENSPPAG00000033617 #25	POLN (ENSPPAG00000042877) #28	ENSPPAG00000026673	HAUS3 (ENSPPAG00000032988) #29	ENSPPAG00000042591 #30	ZFYVE28 (ENSPPAG00000013584) #31	CFAP99 (ENSPPAG00000035753) #33	RNF4 (ENSPPAG00000035112) #34	FAM193A (ENSPPAG00000039176) #35	ENSPPAG00000035246 #36	SH3BP2 (ENSPPAG00000036464) #37	ADD1 (ENSPPAG00000039399)	MFSD10 (ENSPPAG00000041607)
Human	MODERN SPECIES	16	SLC26A1 (ENSG00000145217)	IDUA (ENSG00000127415) #7	FGFRL1 (ENSG00000127418) #8	RNF212 (ENSG00000178222)	SPON2 (ENSG00000159674) #10	CTBP1 (ENSG00000159692) #11	MAEA (ENSG00000090316) #13	UVSSA (ENSG00000163945) #14	NKX1-1 (ENSG00000235608) #15	FAM53A (ENSG00000174137) #16	SLBP (ENSG00000163950) #17	TACC3 (ENSG00000013810) #19	TMEM129 (ENSG00000168936) #18	FGFR3 (ENSG00000068078) #20	LETM1 (ENSG00000168924) #21	NSD2 (ENSG00000109685) #22	NELFA (ENSG00000185049) #23	C4orf48 (ENSG00000243449) #24	NAT8L (ENSG00000185818) #25	POLN (ENSG00000130997) #28	HAUS3 (ENSG00000214367) #29	MXD4 (ENSG00000123933) #30	ZFYVE28 (ENSG00000159733) #31	CFAP99 (ENSG00000206113) #33	RNF4 (ENSG00000063978) #34	FAM193A (ENSG00000125386) #35	TNIP2 (ENSG00000168884) #36	SH3BP2 (ENSG00000087266) #37	ADD1 (ENSG00000087274)	MFSD10 (ENSG00000109736)	NOP14 (ENSG00000087269)
Gorilla	MODERN SPECIES	17	IDUA (ENSGGOG00000010322) #7	FGFRL1 (ENSGGOG00000010340) #8	RNF212 (ENSGGOG00000023243)	ENSGGOG00000007686 #9	SPON2 (ENSGGOG00000002707) #10	CTBP1 (ENSGGOG00000010541) #11	ENSGGOG00000036321	MAEA (ENSGGOG00000004866) #13	UVSSA (ENSGGOG00000004872) #14	FAM53A (ENSGGOG00000003163) #16	SLBP (ENSGGOG00000003167) #17	TMEM129 (ENSGGOG00000039598) #18	TACC3 (ENSGGOG00000041158) #19	FGFR3 (ENSGGOG00000015081) #20	LETM1 (ENSGGOG00000002923) #21	NSD2 (ENSGGOG00000014144) #22	NELFA (ENSGGOG00000014161) #23	ENSGGOG00000041239 #24	ENSGGOG00000037682 #25	POLN (ENSGGOG00000006832) #28	ENSGGOG00000015700	HAUS3 (ENSGGOG00000000744) #29	MXD4 (ENSGGOG00000000747) #30	ZFYVE28 (ENSGGOG00000000748) #31	CFAP99 (ENSGGOG00000041964) #33	RNF4 (ENSGGOG00000036446) #34	ENSGGOG00000025865	SH3BP2 (ENSGGOG00000014162) #37	ADD1 (ENSGGOG00000007407)	MFSD10 (ENSGGOG00000007420)	NOP14 (ENSGGOG00000011213)
Orangutan	MODERN SPECIES	17	FGFRL1 (ENSPPYG00000040964) #8	ENSPPYG00000014517	ENSPPYG00000014518 #9	SPON2 (ENSPPYG00000014522) #10	CTBP1 (ENSPPYG00000014524) #11	ENSPPYG00000038782	MAEA (ENSPPYG00000014525) #13	UVSSA (ENSPPYG00000014526) #14	NKX1-1 (ENSPPYG00000041138) #15	FAM53A (ENSPPYG00000014528) #16	ENSPPYG00000014529 #17	TMEM129 (ENSPPYG00000014530) #18	TACC3 (ENSPPYG00000014531) #19	FGFR3 (ENSPPYG00000014532) #20	LETM1 (ENSPPYG00000014533) #21	NSD2 (ENSPPYG00000014534) #22	NELFA (ENSPPYG00000014535) #23	ENSPPYG00000014536 #24	NAT8L (ENSPPYG00000014537) #25	POLN (ENSPPYG00000014538) #28	ENSPPYG00000040447	ENSPPYG00000014539 #29	ENSPPYG00000036280	ENSPPYG00000037498 #30	ZFYVE28 (ENSPPYG00000014542) #31	CFAP99 (ENSPPYG00000040137) #33	RNF4 (ENSPPYG00000025865) #34	FAM193A (ENSPPYG00000014544) #35	TNIP2 (ENSPPYG00000014545) #36	SH3BP2 (ENSPPYG00000014546) #37	ADD1 (ENSPPYG00000014547)
Gibbon	MODERN SPECIES	12	ENSNLEG00000000991 #8	ENSNLEG00000000998	ENSNLEG00000035394 #9	SPON2 (ENSNLEG00000001006) #10	CTBP1 (ENSNLEG00000001055) #11	MAEA (ENSNLEG00000001060) #13	UVSSA (ENSNLEG00000001082) #14	ENSNLEG00000001097	FAM53A (ENSNLEG00000000044) #16	SLBP (ENSNLEG00000000048) #17	ENSNLEG00000034209 #18	ENSNLEG00000035802	TACC3 (ENSNLEG00000000057) #19	ENSNLEG00000000063 #20	LETM1 (ENSNLEG00000000067) #21	NSD2 (ENSNLEG00000000081) #22	ENSNLEG00000000120 #23	ENSNLEG00000030858 #24	ENSNLEG00000035664 #25	ENSNLEG00000000145 #29	POLN (ENSNLEG00000000132) #28	ENSNLEG00000036277	ENSNLEG00000000149 #30	ZFYVE28 (ENSNLEG00000000151) #31	ENSNLEG00000000154 #33	ENSNLEG00000034085	ENSNLEG00000031900 #34	FAM193A (ENSNLEG00000000167) #35	ENSNLEG00000000191 #36	SH3BP2 (ENSNLEG00000000199) #37	ADD1 (ENSNLEG00000000201)
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00910000147922	ENSGT00940000153203.B #13	ENSGT00910000146990	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a.g #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000000703.g.a.c.b	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00650000094590	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00910000146990	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a.g #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000000703.g.a.c.b	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00650000094590	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00910000146990	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a.g #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000000703.h.h.a	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00650000094590	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00910000146990	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a.g #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000000703.h.h.a	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581
Olive baboon	MODERN SPECIES	13	ENSPANG00000016992	IDUA (ENSPANG00000007828) #7	FGFRL1 (ENSPANG00000040655) #8	RNF212 (ENSPANG00000011989)	SPON2 (ENSPANG00000013162) #10	CTBP1 (ENSPANG00000005494) #11	MAEA (ENSPANG00000024432) #13	UVSSA (ENSPANG00000019190) #14	NKX1-1 (ENSPANG00000035702) #15	FAM53A (ENSPANG00000020344) #16	SLBP (ENSPANG00000004932) #17	TMEM129 (ENSPANG00000005178) #18	TACC3 (ENSPANG00000007581) #19	FGFR3 (ENSPANG00000024533) #20	LETM1 (ENSPANG00000024554) #21	NSD2 (ENSPANG00000022789) #22	NELFA (ENSPANG00000019016) #23	ENSPANG00000029835	C4orf48 (ENSPANG00000006016) #24	POLN (ENSPANG00000000640) #28	HAUS3 (ENSPANG00000007327) #29	ENSPANG00000049266	MXD4 (ENSPANG00000024535) #30	ZFYVE28 (ENSPANG00000001128) #31	CFAP99 (ENSPANG00000034047) #33	RNF4 (ENSPANG00000013408) #34	FAM193A (ENSPANG00000006875) #35	TNIP2 (ENSPANG00000019351) #36	SH3BP2 (ENSPANG00000021586) #37	ADD1 (ENSPANG00000018890)	ENSPANG00000018032
Cercopithecinae_d	ANCESTRAL SPECIES	85	ENSGT00940000156736 #8	ENSGT00960000188067	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00910000146990	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a.g #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Sooty mangabey	MODERN SPECIES	649	ENSCATG00000035612	ENSCATG00000044938	ENSCATG00000031977 #9	SPON2 (ENSCATG00000036451) #10	CTBP1 (ENSCATG00000035745) #11	MAEA (ENSCATG00000019101) #13	ENSCATG00000041571	UVSSA (ENSCATG00000010984) #14	NKX1-1 (ENSCATG00000042002) #15	FAM53A (ENSCATG00000044777) #16	SLBP (ENSCATG00000029173) #17	TMEM129 (ENSCATG00000029726) #18	TACC3 (ENSCATG00000029112) #19	FGFR3 (ENSCATG00000033697) #20	ENSCATG00000042406 #21	NSD2 (ENSCATG00000013442) #22	NELFA (ENSCATG00000036998) #23	C4orf48 (ENSCATG00000036109) #24	NAT8L (ENSCATG00000039077) #25	ENSCATG00000036129	POLN (ENSCATG00000038015) #28	HAUS3 (ENSCATG00000038591) #29	MXD4 (ENSCATG00000037468) #30	ZFYVE28 (ENSCATG00000043569) #31	CFAP99 (ENSCATG00000015552) #33	RNF4 (ENSCATG00000035992) #34	FAM193A (ENSCATG00000042635) #35	ENSCATG00000012185	SH3BP2 (ENSCATG00000032838) #37	ADD1 (ENSCATG00000020512)	ENSCATG00000036685
Drill	MODERN SPECIES	1719	IDUA (ENSMLEG00000040558) #7	FGFRL1 (ENSMLEG00000037900) #8	ENSMLEG00000028284	ENSMLEG00000032227 #9	SPON2 (ENSMLEG00000002232) #10	CTBP1 (ENSMLEG00000030520) #11	MAEA (ENSMLEG00000039505) #13	ENSMLEG00000038826	UVSSA (ENSMLEG00000007158) #14	FAM53A (ENSMLEG00000035332) #16	SLBP (ENSMLEG00000024639) #17	TMEM129 (ENSMLEG00000040279) #18	TACC3 (ENSMLEG00000010263) #19	FGFR3 (ENSMLEG00000030618) #20	ENSMLEG00000040964 #21	NSD2 (ENSMLEG00000037492) #22	NELFA (ENSMLEG00000031010) #23	C4orf48 (ENSMLEG00000032446) #24	ENSMLEG00000041510 #25	ENSMLEG00000032508	POLN (ENSMLEG00000038809) #28	HAUS3 (ENSMLEG00000035756) #29	MXD4 (ENSMLEG00000021543) #30	ZFYVE28 (ENSMLEG00000026808) #31	CFAP99 (ENSMLEG00000042081) #33	RNF4 (ENSMLEG00000038069) #34	ENSMLEG00000011279	FAM193A (ENSMLEG00000042643) #35	TNIP2 (ENSMLEG00000034847) #36	SH3BP2 (ENSMLEG00000043782) #37	ADD1 (ENSMLEG00000031385)
Macaca	ANCESTRAL SPECIES	25	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00910000146990	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a.g #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000000703.h.h.a	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00650000094590	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581
Pig-tailed macaque	MODERN SPECIES	590	FGFRL1 (ENSMNEG00000028620) #8	ENSMNEG00000036883	ENSMNEG00000042968 #9	SPON2 (ENSMNEG00000034158) #10	CTBP1 (ENSMNEG00000037787) #11	MAEA (ENSMNEG00000028551) #13	UVSSA (ENSMNEG00000034877) #14	ENSMNEG00000027696	NKX1-1 (ENSMNEG00000036214) #15	FAM53A (ENSMNEG00000036030) #16	SLBP (ENSMNEG00000008082) #17	TMEM129 (ENSMNEG00000038437) #18	TACC3 (ENSMNEG00000041051) #19	FGFR3 (ENSMNEG00000043249) #20	ENSMNEG00000038507 #21	NSD2 (ENSMNEG00000030530) #22	NELFA (ENSMNEG00000029249) #23	ENSMNEG00000040986	C4orf48 (ENSMNEG00000044160) #24	NAT8L (ENSMNEG00000029002) #25	POLN (ENSMNEG00000044077) #28	ENSMNEG00000034392	HAUS3 (ENSMNEG00000031199) #29	MXD4 (ENSMNEG00000036831) #30	ZFYVE28 (ENSMNEG00000039840) #31	CFAP99 (ENSMNEG00000030381) #33	RNF4 (ENSMNEG00000035146) #34	FAM193A (ENSMNEG00000045102) #35	TNIP2 (ENSMNEG00000045051) #36	SH3BP2 (ENSMNEG00000033987) #37	ADD1 (ENSMNEG00000043560)
Macaca_a	ANCESTRAL SPECIES	12	ENSGT01100000263544.c.a.a.b	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00910000146990	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a.g #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000000703.h.h.a	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422
Rhesus	MODERN SPECIES	15	IDUA (ENSMMUG00000057764) #7	SLC26A1 (ENSMMUG00000017223)	FGFRL1 (ENSMMUG00000032300) #8	RNF212 (ENSMMUG00000015507)	SPON2 (ENSMMUG00000020856) #10	CTBP1 (ENSMMUG00000008323) #11	MAEA (ENSMMUG00000008357) #13	UVSSA (ENSMMUG00000038497) #14	NKX1-1 (ENSMMUG00000051731) #15	FAM53A (ENSMMUG00000008363) #16	SLBP (ENSMMUG00000032303) #17	TMEM129 (ENSMMUG00000064450) #18	TACC3 (ENSMMUG00000011191) #19	FGFR3 (ENSMMUG00000019945) #20	LETM1 (ENSMMUG00000019948) #21	NSD2 (ENSMMUG00000046942) #22	NELFA (ENSMMUG00000009944) #23	ENSMMUG00000003234	CKQ732225.1H4orf48 (ENSMMUG00000032304) #24	POLN (ENSMMUG00000001156) #28	ENSMMUG00000055448	MXD4 (ENSMMUG00000048558) #30	ZFYVE28 (ENSMMUG00000032306) #31	CFAP99 (ENSMMUG00000040759) #33	RNF4 (ENSMMUG00000007948) #34	FAM193A (ENSMMUG00000013158) #35	TNIP2 (ENSMMUG00000007966) #36	SH3BP2 (ENSMMUG00000014335) #37	ADD1 (ENSMMUG00000008379)	MFSD10 (ENSMMUG00000008383)	NOP14 (ENSMMUG00000008385)
Crab-eating macaque	MODERN SPECIES	15	ENSMFAG00000039496	ENSMFAG00000002925 #8	RNF212 (ENSMFAG00000002719)	SPON2 (ENSMFAG00000050124) #10	CTBP1 (ENSMFAG00000000176) #11	MAEA (ENSMFAG00000001193) #13	UVSSA (ENSMFAG00000045124) #14	ENSMFAG00000030632	NKX1-1 (ENSMFAG00000002277) #15	FAM53A (ENSMFAG00000052796) #16	SLBP (ENSMFAG00000030130) #17	TMEM129 (ENSMFAG00000000493) #18	TACC3 (ENSMFAG00000043154) #19	FGFR3 (ENSMFAG00000032292) #20	LETM1 (ENSMFAG00000039886) #21	NSD2 (ENSMFAG00000031384) #22	NELFA (ENSMFAG00000035742) #23	ENSMFAG00000038719	C4orf48 (ENSMFAG00000001046) #24	ENSMFAG00000059887 #25	POLN (ENSMFAG00000032512) #28	ENSMFAG00000062209	HAUS3 (ENSMFAG00000034116) #29	ENSMFAG00000053887 #30	ZFYVE28 (ENSMFAG00000062429) #31	CFAP99 (ENSMFAG00000034253) #33	RNF4 (ENSMFAG00000050616) #34	FAM193A (ENSMFAG00000045259) #35	TNIP2 (ENSMFAG00000003617) #36	SH3BP2 (ENSMFAG00000040599) #37	ADD1 (ENSMFAG00000040609)
Vervet Monkey	MODERN SPECIES	19	IDUA (ENSCSAG00000015497) #7	FGFRL1 (ENSCSAG00000015508) #8	RNF212 (ENSCSAG00000015539)	ENSCSAG00000015572 #9	SPON2 (ENSCSAG00000015578) #10	CTBP1 (ENSCSAG00000015583) #11	MAEA (ENSCSAG00000015589) #13	UVSSA (ENSCSAG00000015594) #14	NKX1-1 (ENSCSAG00000015596) #15	FAM53A (ENSCSAG00000015598) #16	SLBP (ENSCSAG00000015628) #17	TMEM129 (ENSCSAG00000015634) #18	TACC3 (ENSCSAG00000015639) #19	FGFR3 (ENSCSAG00000015647) #20	LETM1 (ENSCSAG00000015656) #21	NSD2 (ENSCSAG00000015664) #22	NELFA (ENSCSAG00000015669) #23	C4orf48 (ENSCSAG00000015674) #24	NAT8L (ENSCSAG00000015681) #25	POLN (ENSCSAG00000015716) #28	HAUS3 (ENSCSAG00000015734) #29	MXD4 (ENSCSAG00000015741) #30	ZFYVE28 (ENSCSAG00000015744) #31	CFAP99 (ENSCSAG00000015752) #33	FAM193A (ENSCSAG00000015766) #35	TNIP2 (ENSCSAG00000015771) #36	SH3BP2 (ENSCSAG00000015782) #37	ADD1 (ENSCSAG00000015789)	MFSD10 (ENSCSAG00000015797)	NOP14 (ENSCSAG00000015804)	GRK4 (ENSCSAG00000015830)
Rhinopithecus	ANCESTRAL SPECIES	135										ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a.g #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000000703.g.a.c.b	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00650000094590	ENSGT01080000257748.b	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00940000164052.c
Golden snub-nosed monkey	MODERN SPECIES	2481										FAM53A (ENSRROG00000028469) #16	SLBP (ENSRROG00000030081) #17	TMEM129 (ENSRROG00000041532) #18	TACC3 (ENSRROG00000039140) #19	FGFR3 (ENSRROG00000042585) #20	LETM1 (ENSRROG00000038867) #21	NSD2 (ENSRROG00000033896) #22	NELFA (ENSRROG00000040024) #23	ENSRROG00000017138	C4orf48 (ENSRROG00000029831) #24	ENSRROG00000020413 #25	POLN (ENSRROG00000045711) #28	ENSRROG00000031302	HAUS3 (ENSRROG00000033454) #29	MXD4 (ENSRROG00000040089) #30	ZFYVE28 (ENSRROG00000026858) #31	CFAP99 (ENSRROG00000041025) #33	RNF4 (ENSRROG00000038892) #34	FAM193A (ENSRROG00000033008) #35	TNIP2 (ENSRROG00000045312) #36	SH3BP2 (ENSRROG00000022973) #37	ADD1 (ENSRROG00000038685)
Black snub-nosed monkey	MODERN SPECIES	539										FAM53A (ENSRBIG00000036916) #16	SLBP (ENSRBIG00000039159) #17	TMEM129 (ENSRBIG00000015368) #18	TACC3 (ENSRBIG00000042233) #19	FGFR3 (ENSRBIG00000040633) #20	LETM1 (ENSRBIG00000038284) #21	NSD2 (ENSRBIG00000043171) #22	NELFA (ENSRBIG00000031633) #23	ENSRBIG00000037817	C4orf48 (ENSRBIG00000037248) #24	ENSRBIG00000044373 #25	POLN (ENSRBIG00000007947) #28	ENSRBIG00000041367	HAUS3 (ENSRBIG00000037222) #29	MXD4 (ENSRBIG00000043500) #30	ZFYVE28 (ENSRBIG00000020333) #31	CFAP99 (ENSRBIG00000035346) #33	RNF4 (ENSRBIG00000027423) #34	CDCP1 (ENSRBIG00000030951)	CLEC3B (ENSRBIG00000039337)	EXOSC7 (ENSRBIG00000040862)	ZDHHC3 (ENSRBIG00000037122)
Platyrrhini	ANCESTRAL SPECIES	5	ENSGT01100000263544.c.a.a.b	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342.j #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318.w #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422.a	ENSGT00390000017459
Cebidae	ANCESTRAL SPECIES	4	ENSGT01100000263544.c.a.a.b	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342.j #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318.w #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422.a	ENSGT00390000017459
Cebidae_a	ANCESTRAL SPECIES	34	ENSGT01100000263544.c.a.a.b	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342.j #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318.x #34	ENSGT00390000010318.w #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422.a
Capuchin	MODERN SPECIES	117	IDUA (ENSCCAG00000007900) #7	FGFRL1 (ENSCCAG00000032864) #8	RNF212 (ENSCCAG00000037676)	ENSCCAG00000025209 #9	SPON2 (ENSCCAG00000032899) #10	CTBP1 (ENSCCAG00000037066) #11	ENSCCAG00000022660 #13	UVSSA (ENSCCAG00000032486) #14	NKX1-1 (ENSCCAG00000034329) #15	FAM53A (ENSCCAG00000005420) #16	SLBP (ENSCCAG00000026134) #17	TMEM129 (ENSCCAG00000021775) #18	TACC3 (ENSCCAG00000037097) #19	FGFR3 (ENSCCAG00000029787) #20	LETM1 (ENSCCAG00000022623) #21	NSD2 (ENSCCAG00000036562) #22	NELFA (ENSCCAG00000025280) #23	C4orf48 (ENSCCAG00000016052) #24	NAT8L (ENSCCAG00000033445) #25	POLN (ENSCCAG00000026095) #28	HAUS3 (ENSCCAG00000037575) #29	MXD4 (ENSCCAG00000026915) #30	ZFYVE28 (ENSCCAG00000019800) #31	ADRA2C (ENSCCAG00000033349)	ENSCCAG00000035547	HMX1 (ENSCCAG00000029215)	ENSCCAG00000031132	CPZ (ENSCCAG00000037917)	GPR78 (ENSCCAG00000023119)	TRMT44 (ENSCCAG00000018176)	ACOX3 (ENSCCAG00000026216)
Bolivian squirrel monkey	MODERN SPECIES	108	SLC26A1 (ENSSBOG00000030545)	IDUA (ENSSBOG00000024010) #7	FGFRL1 (ENSSBOG00000030072) #8	ENSSBOG00000026401	ENSSBOG00000018159 #9	SPON2 (ENSSBOG00000031498) #10	CTBP1 (ENSSBOG00000009891) #11	MAEA (ENSSBOG00000030338) #13	ENSSBOG00000029534 #14	FAM53A (ENSSBOG00000034926) #16	SLBP (ENSSBOG00000033897) #17	TMEM129 (ENSSBOG00000035214) #18	TACC3 (ENSSBOG00000022484) #19	FGFR3 (ENSSBOG00000028613) #20	LETM1 (ENSSBOG00000027558) #21	NSD2 (ENSSBOG00000020624) #22	NELFA (ENSSBOG00000024481) #23	ENSSBOG00000021831 #25	POLN (ENSSBOG00000029730) #28	HAUS3 (ENSSBOG00000035151) #29	MXD4 (ENSSBOG00000020590) #30	ZFYVE28 (ENSSBOG00000024678) #31	CFAP99 (ENSSBOG00000026143) #33	ENSSBOG00000010070	RNF4 (ENSSBOG00000031127) #34	FAM193A (ENSSBOG00000035392) #35	ENSSBOG00000028277	SH3BP2 (ENSSBOG00000004638) #37	ADD1 (ENSSBOG00000032628)	ENSSBOG00000030513	NOP14 (ENSSBOG00000034906)
Marmoset	MODERN SPECIES	15	IDUA (ENSCJAG00000001838) #7	FGFRL1 (ENSCJAG00000001812) #8	ENSCJAG00000082677	ENSCJAG00000012473 #9	SPON2 (ENSCJAG00000048623) #10	ENSCJAG00000001565 #11	MAEA (ENSCJAG00000078979) #13	UVSSA (ENSCJAG00000041289) #14	NKX1-1 (ENSCJAG00000079323) #15	FAM53A (ENSCJAG00000001781) #16	SLBP (ENSCJAG00000001790) #17	TACC3 (ENSCJAG00000001805) #19	FGFR3 (ENSCJAG00000001819) #20	ENSCJAG00000059838	LETM1 (ENSCJAG00000001859) #21	NSD2 (ENSCJAG00000001876) #22	NELFA (ENSCJAG00000039975) #23	C4orf48 (ENSCJAG00000044010) #24	NAT8L (ENSCJAG00000014504) #25	HAUS3 (ENSCJAG00000036903) #29	MXD4 (ENSCJAG00000066421) #30	ZFYVE28 (ENSCJAG00000038192) #31	CFAP99 (ENSCJAG00000038947) #33	RNF4 (ENSCJAG00000014371) #34	ENSCJAG00000057846	FAM193A (ENSCJAG00000014343) #35	TNIP2 (ENSCJAG00000014338) #36	SH3BP2 (ENSCJAG00000014306) #37	ADD1 (ENSCJAG00000014227)	ENSCJAG00000014217	NOP14 (ENSCJAG00000014174)
Mas night monkey	MODERN SPECIES	1118	ENSANAG00000035544	NOP14 (ENSANAG00000022601)	ENSANAG00000026094	ADD1 (ENSANAG00000019463)	SH3BP2 (ENSANAG00000033091) #37	CTBP1 (ENSANAG00000027809) #11	MAEA (ENSANAG00000036521) #13	UVSSA (ENSANAG00000020676) #14	NKX1-1 (ENSANAG00000034667) #15	FAM53A (ENSANAG00000022971) #16	SLBP (ENSANAG00000034769) #17	TMEM129 (ENSANAG00000036729) #18	TACC3 (ENSANAG00000028183) #19	FGFR3 (ENSANAG00000026958) #20	LETM1 (ENSANAG00000037304) #21	NSD2 (ENSANAG00000035180) #22	NELFA (ENSANAG00000027096) #23	C4orf48 (ENSANAG00000032965) #24	NAT8L (ENSANAG00000026210) #25	POLN (ENSANAG00000025375) #28	HAUS3 (ENSANAG00000029444) #29	MXD4 (ENSANAG00000026969) #30	ENSANAG00000026828 #31	ENSANAG00000037948 #31	CFAP99 (ENSANAG00000029171) #33	RNF4 (ENSANAG00000034781) #34	FAM193A (ENSANAG00000032586) #35	TNIP2 (ENSANAG00000033040) #36
Tarsier	MODERN SPECIES	4693																NSD2 (ENSTSYG00000014438) #22
Strepsirrhini	ANCESTRAL SPECIES	40	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Lemuriformes	ANCESTRAL SPECIES	44	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Lemuriformes_a	ANCESTRAL SPECIES	115													ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000158146	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Greater bamboo lemur	MODERN SPECIES	285																NSD2 (ENSPSMG00000022264) #22	NELFA (ENSPSMG00000022331) #23	ENSPSMG00000022363
Coquerels sifaka	MODERN SPECIES	974													FGFR3 (ENSPCOG00000026602) #20	LETM1 (ENSPCOG00000023114) #21	ENSPCOG00000022691	NSD2 (ENSPCOG00000020060) #22	NELFA (ENSPCOG00000015588) #23	C4orf48 (ENSPCOG00000022022) #24	NAT8L (ENSPCOG00000020575) #25	POLN (ENSPCOG00000028057) #28	HAUS3 (ENSPCOG00000019768) #29	MXD4 (ENSPCOG00000018116) #30	ZFYVE28 (ENSPCOG00000018385) #31	CFAP99 (ENSPCOG00000015631) #33
Mouse lemur	MODERN SPECIES	9	RNF212 (ENSMICG00000047687)	ENSMICG00000033680	ENSMICG00000036701 #9	SPON2 (ENSMICG00000002454) #10	CTBP1 (ENSMICG00000012941) #11	MAEA (ENSMICG00000012953) #13	UVSSA (ENSMICG00000012963) #14	ENSMICG00000044932	NKX1-1 (ENSMICG00000042887) #15	FAM53A (ENSMICG00000044027) #16	SLBP (ENSMICG00000014244) #17	TMEM129 (ENSMICG00000014263) #18	ENSMICG00000033578	FGFR3 (ENSMICG00000008153) #20	LETM1 (ENSMICG00000008169) #21	NSD2 (ENSMICG00000011335) #22	NELFA (ENSMICG00000011366) #23	C4orf48 (ENSMICG00000046656) #24	NAT8L (ENSMICG00000045400) #25	POLN (ENSMICG00000047538) #28	HAUS3 (ENSMICG00000028831) #29	MXD4 (ENSMICG00000047939) #30	ZFYVE28 (ENSMICG00000031619) #31	CFAP99 (ENSMICG00000036187) #33	RNF4 (ENSMICG00000041515) #34	FAM193A (ENSMICG00000008863) #35	TNIP2 (ENSMICG00000008835) #36	SH3BP2 (ENSMICG00000002298) #37	ENSMICG00000030984	ADD1 (ENSMICG00000007785)	MFSD10 (ENSMICG00000007796)
Bushbaby	MODERN SPECIES	313	IDUA (ENSOGAG00000015603) #7	SLC26A1 (ENSOGAG00000015601)	FGFRL1 (ENSOGAG00000015610) #8	ENSOGAG00000030464 #9	SPON2 (ENSOGAG00000006366) #10	CTBP1 (ENSOGAG00000006367) #11	MAEA (ENSOGAG00000006370) #13	UVSSA (ENSOGAG00000006373) #14	NKX1-1 (ENSOGAG00000034822) #15	ENSOGAG00000014882	SLBP (ENSOGAG00000009750) #17	TMEM129 (ENSOGAG00000014873) #18	TACC3 (ENSOGAG00000014875) #19	FGFR3 (ENSOGAG00000025157) #20	ENSOGAG00000014883 #21	NSD2 (ENSOGAG00000014890) #22	NELFA (ENSOGAG00000029627) #23	C4orf48 (ENSOGAG00000031277) #24	NAT8L (ENSOGAG00000026595) #25	POLN (ENSOGAG00000011299) #28	HAUS3 (ENSOGAG00000032569) #29	MXD4 (ENSOGAG00000011305) #30	ZFYVE28 (ENSOGAG00000011309) #31	RNF4 (ENSOGAG00000010776) #34	FAM193A (ENSOGAG00000012386) #35	TNIP2 (ENSOGAG00000012391) #36	SH3BP2 (ENSOGAG00000008463) #37	ADD1 (ENSOGAG00000011061)	MFSD10 (ENSOGAG00000011069)	NOP14 (ENSOGAG00000011073)	GRK4 (ENSOGAG00000005619)
Laurasiatheria	ANCESTRAL SPECIES	11	ENSGT00940000156736 #8	ENSGT00940000165250	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422
Eulipotyphla	ANCESTRAL SPECIES	1032																ENSGT00940000157429 #22	ENSGT00390000005342 #23
Common shrew	MODERN SPECIES	764																NSD2 (ENSSARG00000001096) #22	NELFA (ENSSARG00000001141) #23
Hedgehog	MODERN SPECIES	1228																NSD2 (ENSEEUG00000014911) #22	ENSEEUG00000015116 #23
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422
Carnivora	ANCESTRAL SPECIES	5	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00940000164295
Caniformia	ANCESTRAL SPECIES	7	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00940000164295	ENSGT00390000017459
Caniformia_b	ANCESTRAL SPECIES	5	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00940000164295	ENSGT00390000017459
Ursidae	ANCESTRAL SPECIES	29	ENSGT01100000263544.c.a.a.b	ENSGT00390000015494.f #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00940000164295	ENSGT00830000128422	ENSGT00390000017459
Ursus	ANCESTRAL SPECIES	105	ENSGT00940000159492	ENSGT00390000015494.f #7	ENSGT01100000263544.c.a.a.b	ENSGT00940000156736 #8	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00940000164052	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459	ENSGT00940000160151.g
Polar bear	DUPLICATION
Polar bear	MODERN SPECIES	111	ENSUMAG00000005806	ENSUMAG00000005996	TMEM175 (ENSUMAG00000006032)	DGKQ (ENSUMAG00000006042)	IDUA (ENSUMAG00000006064) #7	SLC26A1 (ENSUMAG00000006068)	ENSUMAG00000006071 #9	CTBP1 (ENSUMAG00000006076) #11	ENSUMAG00000006084 #13	UVSSA (ENSUMAG00000006091) #14	ENSUMAG00000006104	SLBP (ENSUMAG00000006119) #17	TMEM129 (ENSUMAG00000006128) #18	TACC3 (ENSUMAG00000006135) #19	LETM1 (ENSUMAG00000006168) #21	ENSUMAG00000006396 #22	ENSUMAG00000006404 #22	NELFA (ENSUMAG00000006418) #23	ENSUMAG00000006510 #25	POLN (ENSUMAG00000006517) #28	HAUS3 (ENSUMAG00000006573) #29	ENSUMAG00000006575 #30	ZFYVE28 (ENSUMAG00000006582) #31	CFAP99 (ENSUMAG00000006604) #33	RNF4 (ENSUMAG00000006614) #34	FAM193A (ENSUMAG00000006616) #35	ENSUMAG00000006620	SH3BP2 (ENSUMAG00000006627) #37	ENSUMAG00000006661	ENSUMAG00000006673	NOP14 (ENSUMAG00000006697)
Polar bear	MODERN SPECIES	111	ENSUMAG00000005996	TMEM175 (ENSUMAG00000006032)	DGKQ (ENSUMAG00000006042)	IDUA (ENSUMAG00000006064) #7	SLC26A1 (ENSUMAG00000006068)	ENSUMAG00000006071 #9	CTBP1 (ENSUMAG00000006076) #11	ENSUMAG00000006084 #13	UVSSA (ENSUMAG00000006091) #14	ENSUMAG00000006104	SLBP (ENSUMAG00000006119) #17	TMEM129 (ENSUMAG00000006128) #18	TACC3 (ENSUMAG00000006135) #19	LETM1 (ENSUMAG00000006168) #21	ENSUMAG00000006396 #22	ENSUMAG00000006404 #22	NELFA (ENSUMAG00000006418) #23	ENSUMAG00000006510 #25	POLN (ENSUMAG00000006517) #28	HAUS3 (ENSUMAG00000006573) #29	ENSUMAG00000006575 #30	ZFYVE28 (ENSUMAG00000006582) #31	CFAP99 (ENSUMAG00000006604) #33	RNF4 (ENSUMAG00000006614) #34	FAM193A (ENSUMAG00000006616) #35	ENSUMAG00000006620	SH3BP2 (ENSUMAG00000006627) #37	ENSUMAG00000006661	ENSUMAG00000006673	NOP14 (ENSUMAG00000006697)	GRK4 (ENSUMAG00000006953)
American black bear	MODERN SPECIES	4489																NSD2 (ENSUAMG00000003425) #22	NELFA (ENSUAMG00000003361) #23
Giant Panda	MODERN SPECIES	2	TMEM175 (ENSAMEG00000016795)	DGKQ (ENSAMEG00000016800)	SLC26A1 (ENSAMEG00000026648)	IDUA (ENSAMEG00000016812) #7	ENSAMEG00000029356	ENSAMEG00000024953 #9	SPON2 (ENSAMEG00000023804) #10	CTBP1 (ENSAMEG00000016883) #11	ENSAMEG00000016890 #13	UVSSA (ENSAMEG00000016899) #14	ENSAMEG00000016915 #17	TMEM129 (ENSAMEG00000016921) #18	TACC3 (ENSAMEG00000016924) #19	FGFR3 (ENSAMEG00000014119) #20	LETM1 (ENSAMEG00000014210) #21	NSD2 (ENSAMEG00000014221) #22	NELFA (ENSAMEG00000014240) #23	NAT8L (ENSAMEG00000014278) #25	POLN (ENSAMEG00000014290) #28	HAUS3 (ENSAMEG00000014332) #29	MXD4 (ENSAMEG00000014340) #30	ZFYVE28 (ENSAMEG00000014349) #31	CFAP99 (ENSAMEG00000028653) #33	FAM193A (ENSAMEG00000014383) #35	TNIP2 (ENSAMEG00000014405) #36	SH3BP2 (ENSAMEG00000014415) #37	ADD1 (ENSAMEG00000014449)	MFSD10 (ENSAMEG00000014523)	NOP14 (ENSAMEG00000014547)	GRK4 (ENSAMEG00000014586)	HTT (ENSAMEG00000014658)
Mustelinae	ANCESTRAL SPECIES	69	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00940000164295	ENSGT00390000017459
Ferret	MODERN SPECIES	334	IDUA (ENSMPUG00000011225) #7	FGFRL1 (ENSMPUG00000011220) #8	RNF212 (ENSMPUG00000011212)	ENSMPUG00000011191 #9	SPON2 (ENSMPUG00000011185) #10	CTBP1 (ENSMPUG00000011182) #11	MAEA (ENSMPUG00000011174) #13	UVSSA (ENSMPUG00000011171) #14	ENSMPUG00000011168	FAM53A (ENSMPUG00000011145) #16	SLBP (ENSMPUG00000011139) #17	TMEM129 (ENSMPUG00000011130) #18	ENSMPUG00000011062 #19	FGFR3 (ENSMPUG00000011055) #20	LETM1 (ENSMPUG00000011045) #21	NSD2 (ENSMPUG00000011036) #22	NELFA (ENSMPUG00000011031) #23	ENSMPUG00000011023	NAT8L (ENSMPUG00000011019) #25	HAUS3 (ENSMPUG00000011011) #29	MXD4 (ENSMPUG00000010989) #30	ZFYVE28 (ENSMPUG00000010981) #31	CFAP99 (ENSMPUG00000010977) #33	RNF4 (ENSMPUG00000010957) #34	FAM193A (ENSMPUG00000010949) #35	TNIP2 (ENSMPUG00000010947) #36	SH3BP2 (ENSMPUG00000010942) #37	ADD1 (ENSMPUG00000010933)	MFSD10 (ENSMPUG00000010909)	NOP14 (ENSMPUG00000010899)	GRK4 (ENSMPUG00000010706)
American mink	MODERN SPECIES	139	RNF212 (ENSNVIG00000022299)	ENSNVIG00000022306 #9	SPON2 (ENSNVIG00000022329) #10	CTBP1 (ENSNVIG00000022335) #11	ENSNVIG00000022343	MAEA (ENSNVIG00000022353) #13	UVSSA (ENSNVIG00000022388) #14	NKX1-1 (ENSNVIG00000022402) #15	FAM53A (ENSNVIG00000022407) #16	SLBP (ENSNVIG00000022417) #17	TMEM129 (ENSNVIG00000000024) #18	ENSNVIG00000000076	ENSNVIG00000000109 #20	ENSNVIG00000000117 #20	LETM1 (ENSNVIG00000000166) #21	NSD2 (ENSNVIG00000000194) #22	NELFA (ENSNVIG00000000511) #23	C4orf48 (ENSNVIG00000000550) #24	NAT8L (ENSNVIG00000000559) #25	POLN (ENSNVIG00000000575) #28	HAUS3 (ENSNVIG00000000614) #29	MXD4 (ENSNVIG00000000639) #30	ENSNVIG00000000648 #31	ENSNVIG00000000660 #31	CFAP99 (ENSNVIG00000000667) #33	RNF4 (ENSNVIG00000000683) #34	FAM193A (ENSNVIG00000000739) #35	TNIP2 (ENSNVIG00000000789) #36	SH3BP2 (ENSNVIG00000000831) #37	ENSNVIG00000000898	ADD1 (ENSNVIG00000000906)
Canidae	ANCESTRAL SPECIES	21	ENSGT00390000000470	ENSGT00850000132319.a.a.b	ENSGT00530000063255.B	ENSGT00390000006192	ENSGT00530000063669.a	ENSGT00950000186028	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00940000164295	ENSGT00390000017459
Canis_lupus	ANCESTRAL SPECIES	23	ENSGT00390000000470	ENSGT00850000132319.a.a.b	ENSGT00530000063255.B	ENSGT00390000006192	ENSGT00530000063669.a	ENSGT00950000186028	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00940000164295	ENSGT00390000017459
Dog	MODERN SPECIES	22	LAP3 (ENSCAFG00845000510)	MED28 (ENSCAFG00845000492)	ENSCAFG00845000449	ENSCAFG00845000433	ENSCAFG00845000407 #13	UVSSA (ENSCAFG00845000348) #14	NKX1-1 (ENSCAFG00845000317) #15	FAM53A (ENSCAFG00845000302) #16	SLBP (ENSCAFG00845000261) #17	TMEM129 (ENSCAFG00845000213) #18	TACC3 (ENSCAFG00845013476) #19	FGFR3 (ENSCAFG00845013339) #20	LETM1 (ENSCAFG00845013211) #21	ENSCAFG00845013175	ENSCAFG00845013159	NSD2 (ENSCAFG00845013019) #22	NELFA (ENSCAFG00845012841) #23	C3H4orf48 (ENSCAFG00845012789) #24	NAT8L (ENSCAFG00845012758) #25	POLN (ENSCAFG00845012682) #28	MXD4 (ENSCAFG00845012610) #30	ZFYVE28 (ENSCAFG00845012527) #31	CFAP99 (ENSCAFG00845012463) #33	RNF4 (ENSCAFG00845012388) #34	FAM193A (ENSCAFG00845012303) #35	TNIP2 (ENSCAFG00845012210) #36	SH3BP2 (ENSCAFG00845012142) #37	ADD1 (ENSCAFG00845012015)	MFSD10 (ENSCAFG00845011850)	NOP14 (ENSCAFG00845011751)	ENSCAFG00845011720
Dingo	MODERN SPECIES	138	CLRN2 (ENSCAFG00020012251)	LAP3 (ENSCAFG00020012262)	MED28 (ENSCAFG00020012266)	FAM184B (ENSCAFG00020012270)	ENSCAFG00020012281	MAEA (ENSCAFG00020012285) #13	UVSSA (ENSCAFG00020012302) #14	NKX1-1 (ENSCAFG00020012312) #15	FAM53A (ENSCAFG00020012319) #16	SLBP (ENSCAFG00020012334) #17	TMEM129 (ENSCAFG00020012337) #18	TACC3 (ENSCAFG00020012340) #19	FGFR3 (ENSCAFG00020012349) #20	LETM1 (ENSCAFG00020012352) #21	ENSCAFG00020012359	NSD2 (ENSCAFG00020012364) #22	NELFA (ENSCAFG00020012377) #23	C4orf48 (ENSCAFG00020012395) #24	NAT8L (ENSCAFG00020012398) #25	POLN (ENSCAFG00020012402) #28	HAUS3 (ENSCAFG00020012427) #29	MXD4 (ENSCAFG00020012430) #30	ZFYVE28 (ENSCAFG00020012447) #31	CFAP99 (ENSCAFG00020012449) #33	RNF4 (ENSCAFG00020012490) #34	FAM193A (ENSCAFG00020012546) #35	TNIP2 (ENSCAFG00020012703) #36	SH3BP2 (ENSCAFG00020012726) #37	ADD1 (ENSCAFG00020012740)	MFSD10 (ENSCAFG00020012765)	NOP14 (ENSCAFG00020012768)
Red fox	MODERN SPECIES	1	LDB2 (ENSVVUG00000015458)	QDPR (ENSVVUG00000015478)	CLRN2 (ENSVVUG00000015482)	LAP3 (ENSVVUG00000015485)	MED28 (ENSVVUG00000015489)	FAM184B (ENSVVUG00000015510)	ENSVVUG00000015521	MAEA (ENSVVUG00000015526) #13	UVSSA (ENSVVUG00000015547) #14	FAM53A (ENSVVUG00000015571) #16	SLBP (ENSVVUG00000015578) #17	TMEM129 (ENSVVUG00000015588) #18	TACC3 (ENSVVUG00000015594) #19	FGFR3 (ENSVVUG00000015935) #20	LETM1 (ENSVVUG00000023797) #21	NSD2 (ENSVVUG00000023814) #22	NELFA (ENSVVUG00000023825) #23	ENSVVUG00000023827 #24	NAT8L (ENSVVUG00000023829) #25	POLN (ENSVVUG00000023835) #28	HAUS3 (ENSVVUG00000023845) #29	MXD4 (ENSVVUG00000023848) #30	ZFYVE28 (ENSVVUG00000023859) #31	CFAP99 (ENSVVUG00000023861) #33	RNF4 (ENSVVUG00000023864) #34	ENSVVUG00000023867	FAM193A (ENSVVUG00000023873) #35	TNIP2 (ENSVVUG00000023886) #36	SH3BP2 (ENSVVUG00000023905) #37	ADD1 (ENSVVUG00000023924)	MFSD10 (ENSVVUG00000023927)
Felidae	ANCESTRAL SPECIES	4	ENSGT01100000263544.c.a.a.b	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00950000183087.A.a.a.b.p	ENSGT00940000158581
Panthera	DUPLICATION
Panthera	DUPLICATION
Panthera	ANCESTRAL SPECIES	5	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429.x #22	ENSGT00940000157429.w.a #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00950000183087.A.a.a.b.p	ENSGT00940000158581
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429.x #22	ENSGT00940000157429.w.a #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00950000183087.A.a.a.b.p	ENSGT00940000158581	ENSGT00940000164295
leopard	DUPLICATION
leopard	MODERN SPECIES	25													FGFR3 (ENSPPRG00000018012) #20	LETM1 (ENSPPRG00000019273) #21	ENSPPRG00000000058 #22	ENSPPRG00000002562 #22	NELFA (ENSPPRG00000003777) #23	C4orf48 (ENSPPRG00000004524) #24	ENSPPRG00000004633 #25	HAUS3 (ENSPPRG00000007568) #29	MXD4 (ENSPPRG00000009897) #30	ENSPPRG00000012352 #31	CFAP99 (ENSPPRG00000013633) #33	RNF4 (ENSPPRG00000020972) #34	ENSPPRG00000022001	FAM193A (ENSPPRG00000023349) #35	TNIP2 (ENSPPRG00000022784) #36	SH3BP2 (ENSPPRG00000000297) #37	ENSPPRG00000000360	ADD1 (ENSPPRG00000009526)	MFSD10 (ENSPPRG00000010726)
leopard	MODERN SPECIES	25														FGFR3 (ENSPPRG00000018012) #20	LETM1 (ENSPPRG00000019273) #21	ENSPPRG00000000058 #22	ENSPPRG00000002562 #22	NELFA (ENSPPRG00000003777) #23	C4orf48 (ENSPPRG00000004524) #24	ENSPPRG00000004633 #25	HAUS3 (ENSPPRG00000007568) #29	MXD4 (ENSPPRG00000009897) #30	ENSPPRG00000012352 #31	CFAP99 (ENSPPRG00000013633) #33	RNF4 (ENSPPRG00000020972) #34	ENSPPRG00000022001	FAM193A (ENSPPRG00000023349) #35	TNIP2 (ENSPPRG00000022784) #36	SH3BP2 (ENSPPRG00000000297) #37	ENSPPRG00000000360	ADD1 (ENSPPRG00000009526)
Tiger	MODERN SPECIES	303										MAEA (ENSPTIG00000018894) #13	SLBP (ENSPTIG00000015057) #17	TMEM129 (ENSPTIG00000014840) #18	ENSPTIG00000013247 #19	LETM1 (ENSPTIG00000011956) #21	ENSPTIG00000020162 #22	ENSPTIG00000018949 #22	NELFA (ENSPTIG00000017223) #23	C4orf48 (ENSPTIG00000016138) #24	POLN (ENSPTIG00000011746) #28	HAUS3 (ENSPTIG00000011163) #29	ENSPTIG00000010627 #31	ENSPTIG00000009881 #31	CFAP99 (ENSPTIG00000008222) #33	RNF4 (ENSPTIG00000019861) #34	FAM193A (ENSPTIG00000015747) #35	TNIP2 (ENSPTIG00000015248) #36	SH3BP2 (ENSPTIG00000011454) #37	ENSPTIG00000011214	ADD1 (ENSPTIG00000014981)	MFSD10 (ENSPTIG00000012030)	NOP14 (ENSPTIG00000007085)
Panthera	ANCESTRAL SPECIES																	ENSGT00940000157429.w.b #22
Tiger	MODERN SPECIES	303											MAEA (ENSPTIG00000018894) #13	SLBP (ENSPTIG00000015057) #17	TMEM129 (ENSPTIG00000014840) #18	ENSPTIG00000013247 #19	LETM1 (ENSPTIG00000011956) #21	ENSPTIG00000020162 #22	ENSPTIG00000018949 #22	NELFA (ENSPTIG00000017223) #23	C4orf48 (ENSPTIG00000016138) #24	POLN (ENSPTIG00000011746) #28	HAUS3 (ENSPTIG00000011163) #29	ENSPTIG00000010627 #31	ENSPTIG00000009881 #31	CFAP99 (ENSPTIG00000008222) #33	RNF4 (ENSPTIG00000019861) #34	FAM193A (ENSPTIG00000015747) #35	TNIP2 (ENSPTIG00000015248) #36	SH3BP2 (ENSPTIG00000011454) #37	ENSPTIG00000011214	ADD1 (ENSPTIG00000014981)	MFSD10 (ENSPTIG00000012030)
Panthera	ANCESTRAL SPECIES	5	ENSGT01100000263544.c.a.a.b	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429.x #22	ENSGT00940000157429.w.a #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00950000183087.A.a.a.b.p
Panthera_a	ANCESTRAL SPECIES	2	ENSGT01100000263544.c.a.a.b	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429.x #22	ENSGT00940000157429.w.a #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00950000183087.A.a.a.b.p	ENSGT00940000158581
lion	MODERN SPECIES	4	DGKQ (ENSPLOG00000005591)	SLC26A1 (ENSPLOG00000005194)	IDUA (ENSPLOG00000005177) #7	FGFRL1 (ENSPLOG00000005150) #8	ENSPLOG00000005044 #9	SPON2 (ENSPLOG00000005028) #10	CTBP1 (ENSPLOG00000004983) #11	MAEA (ENSPLOG00000004894) #13	UVSSA (ENSPLOG00000004830) #14	NKX1-1 (ENSPLOG00000004811) #15	SLBP (ENSPLOG00000004771) #17	TMEM129 (ENSPLOG00000004687) #18	TACC3 (ENSPLOG00000004666) #19	FGFR3 (ENSPLOG00000004622) #20	LETM1 (ENSPLOG00000004551) #21	NSD2 (ENSPLOG00000004484) #22	NELFA (ENSPLOG00000004443) #23	C4orf48 (ENSPLOG00000004418) #24	ENSPLOG00000004406 #25	HAUS3 (ENSPLOG00000004393) #29	ENSPLOG00000004384	MXD4 (ENSPLOG00000004376) #30	ENSPLOG00000004365 #31	ENSPLOG00000004349 #31	CFAP99 (ENSPLOG00000004314) #33	RNF4 (ENSPLOG00000004275) #34	ENSPLOG00000004250	FAM193A (ENSPLOG00000004221) #35	ENSPLOG00000004190	SH3BP2 (ENSPLOG00000004166) #37	ENSPLOG00000004143
Cat	MODERN SPECIES	235	ENSFCAG00000026340	IDUA (ENSFCAG00000004723) #7	FGFRL1 (ENSFCAG00000043643) #8	RNF212 (ENSFCAG00000046779)	ENSFCAG00000018929 #9	SPON2 (ENSFCAG00000036077) #10	CTBP1 (ENSFCAG00000002265) #11	MAEA (ENSFCAG00000002950) #13	UVSSA (ENSFCAG00000002951) #14	NKX1-1 (ENSFCAG00000043543) #15	SLBP (ENSFCAG00000000169) #17	TMEM129 (ENSFCAG00000025439) #18	TACC3 (ENSFCAG00000000171) #19	FGFR3 (ENSFCAG00000018385) #20	LETM1 (ENSFCAG00000010616) #21	NSD2 (ENSFCAG00000037938) #22	NELFA (ENSFCAG00000010623) #23	CB1H4orf48 (ENSFCAG00000033658) #24	NAT8L (ENSFCAG00000044588) #25	HAUS3 (ENSFCAG00000027704) #29	MXD4 (ENSFCAG00000042853) #30	ZFYVE28 (ENSFCAG00000052700) #31	CFAP99 (ENSFCAG00000037967) #33	RNF4 (ENSFCAG00000004051) #34	FAM193A (ENSFCAG00000004056) #35	TNIP2 (ENSFCAG00000004062) #36	ENSFCAG00000047433	SH3BP2 (ENSFCAG00000025020) #37	ENSFCAG00000028314	ADD1 (ENSFCAG00000024752)	MFSD10 (ENSFCAG00000004599)
Laurasiatheria_c	ANCESTRAL SPECIES	8	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217.ac #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Equus	ANCESTRAL SPECIES	12	ENSGT01100000263544.c.a.a.b	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217.ac #31	ENSGT00500000045231 #33	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459	ENSGT00940000160151
Donkey	MODERN SPECIES	22	SLC26A1 (ENSEASG00005022673)	IDUA (ENSEASG00005022661) #7	FGFRL1 (ENSEASG00005022675) #8	RNF212 (ENSEASG00005036465)	ENSEASG00005022677 #9	SPON2 (ENSEASG00005022679) #10	CTBP1 (ENSEASG00005022682) #11	MAEA (ENSEASG00005022693) #13	UVSSA (ENSEASG00005022702) #14	ENSEASG00005031810	SLBP (ENSEASG00005024705) #17	TMEM129 (ENSEASG00005022718) #18	TACC3 (ENSEASG00005022722) #19	FGFR3 (ENSEASG00005022725) #20	LETM1 (ENSEASG00005022727) #21	NSD2 (ENSEASG00005022729) #22	NELFA (ENSEASG00005022732) #23	C4orf48 (ENSEASG00005022733) #24	NAT8L (ENSEASG00005022734) #25	HAUS3 (ENSEASG00005022762) #29	POLN (ENSEASG00005022744) #28	MXD4 (ENSEASG00005034001) #30	ENSEASG00005028915 #31	ENSEASG00005022764 #31	CFAP99 (ENSEASG00005022766) #33	ENSEASG00005036723	RNF4 (ENSEASG00005031929) #34	ENSEASG00005035809	FAM193A (ENSEASG00005022783) #35	TNIP2 (ENSEASG00005000121) #36	SH3BP2 (ENSEASG00005000171) #37
Horse	MODERN SPECIES	22	SLC26A1 (ENSECAG00000022104)	FGFRL1 (ENSECAG00000018253) #8	ENSECAG00000052273	RNF212 (ENSECAG00000038589)	ENSECAG00000018022 #9	SPON2 (ENSECAG00000016940) #10	CTBP1 (ENSECAG00000015999) #11	MAEA (ENSECAG00000013742) #13	UVSSA (ENSECAG00000012127) #14	NKX1-1 (ENSECAG00000031807) #15	SLBP (ENSECAG00000011689) #17	TMEM129 (ENSECAG00000011634) #18	TACC3 (ENSECAG00000011380) #19	FGFR3 (ENSECAG00000019533) #20	LETM1 (ENSECAG00000018569) #21	NSD2 (ENSECAG00000011661) #22	NELFA (ENSECAG00000010240) #23	NAT8L (ENSECAG00000009867) #25	HAUS3 (ENSECAG00000004593) #29	POLN (ENSECAG00000007802) #28	MXD4 (ENSECAG00000029077) #30	ENSECAG00000058211 #31	ZFYVE28 (ENSECAG00000024955) #31	CFAP99 (ENSECAG00000029686) #33	ENSECAG00000060379	FAM193A (ENSECAG00000024501) #35	TNIP2 (ENSECAG00000024134) #36	SH3BP2 (ENSECAG00000021841) #37	ADD1 (ENSECAG00000013136)	MFSD10 (ENSECAG00000010491)	NOP14 (ENSECAG00000023951)
Chiroptera	ANCESTRAL SPECIES	9	ENSGT01100000263544.c.a.a.b	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858.f #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217.ac #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Megabat	MODERN SPECIES	3977																NSD2 (ENSPVAG00000000845) #22	NELFA (ENSPVAG00000000849) #23
Microchiroptera	ANCESTRAL SPECIES	10	ENSGT01100000263544.c.a.a.b	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858.f #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217.ac #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Greater horseshoe bat	MODERN SPECIES	23	SLC26A1 (ENSRFEG00010012284)	IDUA (ENSRFEG00010012246) #7	FGFRL1 (ENSRFEG00010012188) #8	ENSRFEG00010012091 #9	SPON2 (ENSRFEG00010012048) #10	CTBP1 (ENSRFEG00010011872) #11	MAEA (ENSRFEG00010011546) #13	UVSSA (ENSRFEG00010011482) #14	NKX1-1 (ENSRFEG00010011426) #15	FAM53A (ENSRFEG00010011394) #16	SLBP (ENSRFEG00010011166) #17	TMEM129 (ENSRFEG00010011065) #18	TACC3 (ENSRFEG00010010981) #19	FGFR3 (ENSRFEG00010010819) #20	LETM1 (ENSRFEG00010010660) #21	NSD2 (ENSRFEG00010010545) #22	NELFA (ENSRFEG00010010351) #23	C4orf48 (ENSRFEG00010010259) #24	NAT8L (ENSRFEG00010010189) #25	POLN (ENSRFEG00010009949) #28	HAUS3 (ENSRFEG00010009879) #29	MXD4 (ENSRFEG00010009834) #30	ZFYVE28 (ENSRFEG00010009726) #31	CFAP99 (ENSRFEG00010009563) #33	RNF4 (ENSRFEG00010009477) #34	FAM193A (ENSRFEG00010009206) #35	TNIP2 (ENSRFEG00010009107) #36	SH3BP2 (ENSRFEG00010008972) #37	ADD1 (ENSRFEG00010008824)	ENSRFEG00010008736	NOP14 (ENSRFEG00010008647)
Microbat	MODERN SPECIES	2403																ENSMLUG00000011847 #22	NELFA (ENSMLUG00000011875) #23
Artiodactyla	ANCESTRAL SPECIES	12	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422
Suina	ANCESTRAL SPECIES	33	ENSGT01100000263544.c.a.a.b	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Chacoan peccary	MODERN SPECIES	969													ENSCWAG00000020968 #20	ENSCWAG00000020975 #20	LETM1 (ENSCWAG00000020987) #21	NSD2 (ENSCWAG00000021027) #22	NELFA (ENSCWAG00000021130) #23
Pig	MODERN SPECIES	16	SLC26A1 (ENSSSCG00000035739)	FGFRL1 (ENSSSCG00000036512) #8	ENSSSCG00000045703	ENSSSCG00000032808 #9	SPON2 (ENSSSCG00000039488) #10	CTBP1 (ENSSSCG00000031302) #11	MAEA (ENSSSCG00000032304) #13	UVSSA (ENSSSCG00000037035) #14	NKX1-1 (ENSSSCG00000038573) #15	FAM53A (ENSSSCG00000032633) #16	SLBP (ENSSSCG00000055957) #17	TMEM129 (ENSSSCG00000008678) #18	ENSSSCG00000008677 #19	FGFR3 (ENSSSCG00000030827) #20	LETM1 (ENSSSCG00000008675) #21	NSD2 (ENSSSCG00000008682) #22	NELFA (ENSSSCG00000008681) #23	C4orf48 (ENSSSCG00000063120) #24	NAT8L (ENSSSCG00000033541) #25	POLN (ENSSSCG00000027718) #28	MXD4 (ENSSSCG00000008687) #30	ZFYVE28 (ENSSSCG00000008689) #31	CFAP99 (ENSSSCG00000034633) #33	ENSSSCG00000054601	RNF4 (ENSSSCG00000008690) #34	FAM193A (ENSSSCG00000029745) #35	TNIP2 (ENSSSCG00000008691) #36	SH3BP2 (ENSSSCG00000022004) #37	ADD1 (ENSSSCG00000008692)	MFSD10 (ENSSSCG00000008695)	NOP14 (ENSSSCG00000008693)
Artiodactyla_a	ANCESTRAL SPECIES	12	ENSGT01100000263544.c.a.a.b	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422
Camelidae	ANCESTRAL SPECIES	22	ENSGT00390000015667	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT01100000267033	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00940000164295
Arabian camel	MODERN SPECIES	11	TMEM175 (ENSCDRG00005005998)	DGKQ (ENSCDRG00005005859)	SLC26A1 (ENSCDRG00005005838)	IDUA (ENSCDRG00005005765) #7	FGFRL1 (ENSCDRG00005005733) #8	ENSCDRG00005005690 #9	SPON2 (ENSCDRG00005005679) #10	CTBP1 (ENSCDRG00005005616) #11	MAEA (ENSCDRG00005005461) #13	UVSSA (ENSCDRG00005005400) #14	NKX1-1 (ENSCDRG00005005367) #15	SLBP (ENSCDRG00005005313) #17	TMEM129 (ENSCDRG00005005274) #18	TACC3 (ENSCDRG00005005231) #19	LETM1 (ENSCDRG00005005053) #21	ENSCDRG00005005023 #22	ENSCDRG00005004993	NELFA (ENSCDRG00005004890) #23	C4orf48 (ENSCDRG00005004867) #24	ENSCDRG00005004858 #25	POLN (ENSCDRG00005004833) #28	HAUS3 (ENSCDRG00005004806) #29	MXD4 (ENSCDRG00005004719) #30	ENSCDRG00005004698 #31	ENSCDRG00005004685 #31	CFAP99 (ENSCDRG00005004620) #33	RNF4 (ENSCDRG00005004592) #34	FAM193A (ENSCDRG00005004529) #35	TNIP2 (ENSCDRG00005004514) #36	SH3BP2 (ENSCDRG00005004400) #37	ADD1 (ENSCDRG00005004116)
Artiodactyla_b	ANCESTRAL SPECIES	30	ENSGT01100000263544.c.a.a.b	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422
Pecora	ANCESTRAL SPECIES	15	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858.a #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Percora_a	ANCESTRAL SPECIES	18	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858.a #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Bovidae	ANCESTRAL SPECIES	18	ENSGT01100000263544.c.a.a.b	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858.a #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Bovinae	ANCESTRAL SPECIES	15	ENSGT01100000263544.c.a.a.b	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858.a #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
American bison	DUPLICATION
American bison	MODERN SPECIES	2065																ENSBBBG00000006047 #22	ENSBBBG00000023055 #22	ENSBBBG00000006040 #23	POLN (ENSBBBG00000023010) #28
American bison	MODERN SPECIES	2065															ENSBBBG00000006047 #22	ENSBBBG00000023055 #22	ENSBBBG00000006040 #23	POLN (ENSBBBG00000023010) #28
Bos	ANCESTRAL SPECIES	15	ENSGT01100000263544.c.a.a.b	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858.a #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Bos_b	ANCESTRAL SPECIES	14	ENSGT01100000263544.c.a.a.b	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00390000001735.e.b	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858.a #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Hybrid Bos Indicus	MODERN SPECIES	25	SLC26A1 (ENSBIXG00005006076)	IDUA (ENSBIXG00005008330) #7	FGFRL1 (ENSBIXG00005008365) #8	ENSBIXG00005008383	ENSBIXG00005005681 #9	SPON2 (ENSBIXG00005006081) #10	CTBP1 (ENSBIXG00005008435) #11	MAEA (ENSBIXG00005008499) #13	UVSSA (ENSBIXG00005008522) #14	NKX1-1 (ENSBIXG00005008534) #15	ENSBIXG00005008565 #17	TMEM129 (ENSBIXG00005000225) #18	TACC3 (ENSBIXG00005008616) #19	FGFR3 (ENSBIXG00005008663) #20	LETM1 (ENSBIXG00005008685) #21	NSD2 (ENSBIXG00005008768) #22	NELFA (ENSBIXG00005008819) #23	C4orf48 (ENSBIXG00005006404) #24	NAT8L (ENSBIXG00005008838) #25	ENSBIXG00005006191	POLN (ENSBIXG00005000322) #28	ENSBIXG00005008965 #29	MXD4 (ENSBIXG00005008980) #30	ENSBIXG00005009002 #31	ENSBIXG00005009025 #31	CFAP99 (ENSBIXG00005009067) #33	RNF4 (ENSBIXG00005005461) #34	FAM193A (ENSBIXG00005009399) #35	TNIP2 (ENSBIXG00005009483) #36	SH3BP2 (ENSBIXG00005009588) #37	ADD1 (ENSBIXG00005009740)
Cow	MODERN SPECIES	25	IDUA (ENSBTAG00000007002) #7	FGFRL1 (ENSBTAG00000027464) #8	ENSBTAG00000049784	ENSBTAG00000002247 #9	SPON2 (ENSBTAG00000004261) #10	CTBP1 (ENSBTAG00000008480) #11	MAEA (ENSBTAG00000012575) #13	UVSSA (ENSBTAG00000012577) #14	NKX1-1 (ENSBTAG00000048789) #15	ENSBTAG00000048974	SLBP (ENSBTAG00000001328) #17	TMEM129 (ENSBTAG00000011042) #18	TACC3 (ENSBTAG00000011044) #19	FGFR3 (ENSBTAG00000007164) #20	LETM1 (ENSBTAG00000020108) #21	NSD2 (ENSBTAG00000007986) #22	NELFA (ENSBTAG00000017921) #23	C6H4orf48 (ENSBTAG00000031395) #24	ENSBTAG00000053874 #25	POLN (ENSBTAG00000017296) #28	HAUS3 (ENSBTAG00000024787) #29	MXD4 (ENSBTAG00000015209) #30	ZFYVE28 (ENSBTAG00000006683) #31	CFAP99 (ENSBTAG00000054376) #33	RNF4 (ENSBTAG00000027453) #34	FAM193A (ENSBTAG00000009744) #35	TNIP2 (ENSBTAG00000015126)	SH3BP2 (ENSBTAG00000013996) #37	ADD1 (ENSBTAG00000021128)	MFSD10 (ENSBTAG00000021130)	NOP14 (ENSBTAG00000001504)
Bos_a	ANCESTRAL SPECIES	61	ENSGT00940000156736 #8	ENSGT00990000210994	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT01100000263480.a.a.a.a.b.a.a.a.b.a.b	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858.a #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Wild yak	MODERN SPECIES	798							MAEA (ENSBMUG00000021584) #13	UVSSA (ENSBMUG00000021556) #14	ENSBMUG00000021513	ENSBMUG00000021511	SLBP (ENSBMUG00000021468) #17	TMEM129 (ENSBMUG00000021381) #18	TACC3 (ENSBMUG00000021368) #19	FGFR3 (ENSBMUG00000020745) #20	LETM1 (ENSBMUG00000019981) #21	NSD2 (ENSBMUG00000019910) #22	NELFA (ENSBMUG00000019729) #23	POLN (ENSBMUG00000019557) #28	ENSBMUG00000019531
Domestic yak	MODERN SPECIES	25	ENSBGRG00000019433	ENSBGRG00000019312	ENSBGRG00000019257 #9	ENSBGRG00000019141 #10	ENSBGRG00000018881 #11	MAEA (ENSBGRG00000018651) #13	UVSSA (ENSBGRG00000018583) #14	NKX1-1 (ENSBGRG00000018511) #15	ENSBGRG00000018496	ENSBGRG00000018427	SLBP (ENSBGRG00000018109) #17	TMEM129 (ENSBGRG00000017981) #18	TACC3 (ENSBGRG00000017804) #19	FGFR3 (ENSBGRG00000017575) #20	LETM1 (ENSBGRG00000017241) #21	ENSBGRG00000017205 #22	NELFA (ENSBGRG00000017020) #23	C4orf48 (ENSBGRG00000016955) #24	ENSBGRG00000016908 #25	POLN (ENSBGRG00000016638) #28	ENSBGRG00000016598 #11	HAUS3 (ENSBGRG00000016524) #29	ENSBGRG00000016319 #30	ENSBGRG00000016224 #31	ENSBGRG00000016089 #31	CFAP99 (ENSBGRG00000015852) #33	RNF4 (ENSBGRG00000015725) #34	FAM193A (ENSBGRG00000015247) #35	TNIP2 (ENSBGRG00000015105) #36	SH3BP2 (ENSBGRG00000014755) #37	ADD1 (ENSBGRG00000014564)
Caprinae	ANCESTRAL SPECIES	13	ENSGT00940000159492	ENSGT01100000263544.c.a.a.b	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858.a #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904.k #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Goat	MODERN SPECIES	25	ACOX3 (ENSCHIG00000015179)	ENSCHIG00000004823	TRMT44 (ENSCHIG00000019204)	CPZ (ENSCHIG00000022665)	HMX1 (ENSCHIG00000012036)	ADRA2C (ENSCHIG00000008674)	ENSCHIG00000024026	LRPAP1 (ENSCHIG00000012569)	RGS12 (ENSCHIG00000019778)	HGFAC (ENSCHIG00000026186)	ENSCHIG00000013117 #19	SLBP (ENSCHIG00000019364) #17	TMEM129 (ENSCHIG00000024846) #18	ENSCHIG00000013237	LETM1 (ENSCHIG00000019054) #21	NSD2 (ENSCHIG00000009431) #22	NELFA (ENSCHIG00000018283) #23	C4orf48 (ENSCHIG00000002106) #24	NAT8L (ENSCHIG00000015781) #25	ENSCHIG00000007680	ENSCHIG00000014089 #29	MXD4 (ENSCHIG00000024119) #30	ZFYVE28 (ENSCHIG00000011539) #31	CFAP99 (ENSCHIG00000015798) #33	RNF4 (ENSCHIG00000003435) #34	FAM193A (ENSCHIG00000022591) #35	TNIP2 (ENSCHIG00000013890) #36	SH3BP2 (ENSCHIG00000011116) #37	ADD1 (ENSCHIG00000023797)	ENSCHIG00000014284	NOP14 (ENSCHIG00000026702)
Rambouillet Sheep	MODERN SPECIES	22	DGKQ (ENSOARG00020011039)	SLC26A1 (ENSOARG00020011004)	IDUA (ENSOARG00020010816) #7	FGFRL1 (ENSOARG00020010713) #8	ENSOARG00020010628 #9	SPON2 (ENSOARG00020010589) #10	CTBP1 (ENSOARG00020010402) #11	MAEA (ENSOARG00020009920) #13	UVSSA (ENSOARG00020009863) #14	NKX1-1 (ENSOARG00020009848) #15	SLBP (ENSOARG00020023875) #17	TMEM129 (ENSOARG00020023839) #18	ENSOARG00020023797 #19	FGFR3 (ENSOARG00020023492) #20	LETM1 (ENSOARG00020023387) #21	NSD2 (ENSOARG00020023148) #22	NELFA (ENSOARG00020023088) #23	C4orf48 (ENSOARG00020023033) #24	NAT8L (ENSOARG00020023001) #25	ENSOARG00020022986	POLN (ENSOARG00020022890) #28	HAUS3 (ENSOARG00020022851) #29	MXD4 (ENSOARG00020022801) #30	ENSOARG00020022734 #31	ENSOARG00020022674 #31	CFAP99 (ENSOARG00020022601) #33	RNF4 (ENSOARG00020022503) #34	FAM193A (ENSOARG00020022278) #35	TNIP2 (ENSOARG00020022129) #36	SH3BP2 (ENSOARG00020021902) #37	ADD1 (ENSOARG00020021785)
Siberian musk deer	MODERN SPECIES	354	DGKQ (ENSMMSG00000010406)	IDUA (ENSMMSG00000010506) #7	SLC26A1 (ENSMMSG00000010599)	FGFRL1 (ENSMMSG00000010628) #8	ENSMMSG00000010668 #9	SPON2 (ENSMMSG00000010709) #10	CTBP1 (ENSMMSG00000010749) #11	MAEA (ENSMMSG00000010850) #13	UVSSA (ENSMMSG00000011083) #14	NKX1-1 (ENSMMSG00000011124) #15	SLBP (ENSMMSG00000011149) #17	TMEM129 (ENSMMSG00000011303) #18	ENSMMSG00000011328 #19	FGFR3 (ENSMMSG00000011411) #20	LETM1 (ENSMMSG00000011470) #21	NSD2 (ENSMMSG00000011600) #22	NELFA (ENSMMSG00000011766) #23	C4orf48 (ENSMMSG00000011837) #24	NAT8L (ENSMMSG00000011858) #25	POLN (ENSMMSG00000011904) #28	HAUS3 (ENSMMSG00000011973) #29	MXD4 (ENSMMSG00000012003) #30	ENSMMSG00000012038 #31	ENSMMSG00000012065 #31	CFAP99 (ENSMMSG00000012099) #33	RNF4 (ENSMMSG00000015797) #34	FAM193A (ENSMMSG00000015827) #35	TNIP2 (ENSMMSG00000015869) #36	SH3BP2 (ENSMMSG00000015976) #37	ADD1 (ENSMMSG00000016098)	ENSMMSG00000016223
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	29	DGKQ (ENSCHYG00000000312)	SLC26A1 (ENSCHYG00000000284)	ENSCHYG00000000225 #7	FGFRL1 (ENSCHYG00000000201) #8	ENSCHYG00000000191 #9	SPON2 (ENSCHYG00000026323) #10	ENSCHYG00000026312	CTBP1 (ENSCHYG00000026282) #11	MAEA (ENSCHYG00000026208) #13	UVSSA (ENSCHYG00000026183) #14	SLBP (ENSCHYG00000026159) #17	TMEM129 (ENSCHYG00000026136) #18	ENSCHYG00000026110 #19	ENSCHYG00000026079 #20	LETM1 (ENSCHYG00000026028) #21	ENSCHYG00000025972 #22	NELFA (ENSCHYG00000025867) #23	NAT8L (ENSCHYG00000025851) #25	POLN (ENSCHYG00000025750) #28	HAUS3 (ENSCHYG00000025719) #29	ENSCHYG00000025702 #31	ENSCHYG00000025686	CFAP99 (ENSCHYG00000025667) #33	RNF4 (ENSCHYG00000025555) #34	ENSCHYG00000025523	FAM193A (ENSCHYG00000025484) #35	TNIP2 (ENSCHYG00000025444) #36	SH3BP2 (ENSCHYG00000025298) #37	ENSCHYG00000024729	ENSCHYG00000024585	NOP14 (ENSCHYG00000024534)
Yarkand deer	MODERN SPECIES	1323	ENSCHYG00000015665	GRIA3 (ENSCHYG00000015734)	ENSCHYG00000016068	ENSCHYG00000016724	XIAP (ENSCHYG00000016805)	STAG2 (ENSCHYG00000016931)	SH2D1A (ENSCHYG00000017656)	TENM1 (ENSCHYG00000018239)	ENSCHYG00000024954	DCAF12L2 (ENSCHYG00000024968)	DCAF12L1 (ENSCHYG00000024989)	PRR32 (ENSCHYG00000024997)	ENSCHYG00000025010	ENSCHYG00000025024	ACTRT1 (ENSCHYG00000025034)	ENSCHYG00000025048 #22	SMARCA1 (ENSCHYG00000025080)	OCRL (ENSCHYG00000025407)	APLN (ENSCHYG00000025668)	XPNPEP2 (ENSCHYG00000025693)	SASH3 (ENSCHYG00000025793)	ZDHHC9 (ENSCHYG00000025817)	ENSCHYG00000025840	ENSCHYG00000025857	BCORL1 (ENSCHYG00000025970)	ELF4 (ENSCHYG00000026023)	AIFM1 (ENSCHYG00000008742)	RAB33A (ENSCHYG00000009255)	ZNF280C (ENSCHYG00000009313)	RBMX2 (ENSCHYG00000009639)	GPR119 (ENSCHYG00000009922)
Cetacea	ANCESTRAL SPECIES	12	ENSGT01100000263544.c.a.a.b	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES	16	IDUA (ENSBMSG00010010336) #7	FGFRL1 (ENSBMSG00010010322) #8	ENSBMSG00010010309 #9	CTBP1 (ENSBMSG00010010280) #11	MAEA (ENSBMSG00010010210) #13	UVSSA (ENSBMSG00010010170) #14	NKX1-1 (ENSBMSG00010010159) #15	FAM53A (ENSBMSG00010010143) #16	SLBP (ENSBMSG00010010021) #17	TMEM129 (ENSBMSG00010009983) #18	ENSBMSG00010009968	ENSBMSG00010009945 #19	FGFR3 (ENSBMSG00010009892) #20	LETM1 (ENSBMSG00010009849) #21	ENSBMSG00010009841	ENSBMSG00010009831 #22	ENSBMSG00010009815 #22	NELFA (ENSBMSG00010009791) #23	C4orf48 (ENSBMSG00010009769) #24	NAT8L (ENSBMSG00010009755) #25	POLN (ENSBMSG00010009707) #28	HAUS3 (ENSBMSG00010009672) #29	MXD4 (ENSBMSG00010009650) #30	ENSBMSG00010009628 #31	CFAP99 (ENSBMSG00010009605) #33	RNF4 (ENSBMSG00010009582) #34	FAM193A (ENSBMSG00010009552) #35	TNIP2 (ENSBMSG00010009509) #36	SH3BP2 (ENSBMSG00010010433) #37	ADD1 (ENSBMSG00010010402)	ENSBMSG00010010354
Blue whale	MODERN SPECIES	16	FGFRL1 (ENSBMSG00010010322) #8	ENSBMSG00010010309 #9	CTBP1 (ENSBMSG00010010280) #11	MAEA (ENSBMSG00010010210) #13	UVSSA (ENSBMSG00010010170) #14	NKX1-1 (ENSBMSG00010010159) #15	FAM53A (ENSBMSG00010010143) #16	SLBP (ENSBMSG00010010021) #17	TMEM129 (ENSBMSG00010009983) #18	ENSBMSG00010009968	ENSBMSG00010009945 #19	FGFR3 (ENSBMSG00010009892) #20	LETM1 (ENSBMSG00010009849) #21	ENSBMSG00010009841	ENSBMSG00010009831 #22	ENSBMSG00010009815 #22	NELFA (ENSBMSG00010009791) #23	C4orf48 (ENSBMSG00010009769) #24	NAT8L (ENSBMSG00010009755) #25	POLN (ENSBMSG00010009707) #28	HAUS3 (ENSBMSG00010009672) #29	MXD4 (ENSBMSG00010009650) #30	ENSBMSG00010009628 #31	CFAP99 (ENSBMSG00010009605) #33	RNF4 (ENSBMSG00010009582) #34	FAM193A (ENSBMSG00010009552) #35	TNIP2 (ENSBMSG00010009509) #36	SH3BP2 (ENSBMSG00010010433) #37	ADD1 (ENSBMSG00010010402)	ENSBMSG00010010354	NOP14 (ENSBMSG00010010268)
Odontoceti	ANCESTRAL SPECIES	11	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000154158.k.b	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00550000074784.a.b	ENSGT01030000234916	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422
Odontoceti_a	ANCESTRAL SPECIES	22	ENSGT00940000156736 #8	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000154158.k.b	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738.r #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00550000074784.a.b	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Dolphin	MODERN SPECIES	2911																NSD2 (ENSTTRG00000013701) #22	NELFA (ENSTTRG00000013718) #23	ENSTTRG00000013724	ENSTTRG00000013728 #24	ENSTTRG00000013732 #25	POLN (ENSTTRG00000013733) #28	HAUS3 (ENSTTRG00000013736) #29	MXD4 (ENSTTRG00000013740) #30	ZFYVE28 (ENSTTRG00000013742) #31
Odontoceti_b	ANCESTRAL SPECIES	11	ENSGT00940000156736 #8	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000154158.k.b	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738.r #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00550000074784.a.b	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Monodontidae	ANCESTRAL SPECIES	9	ENSGT00940000156736 #8	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000154158.k.b	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738.r #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00550000074784.a.b	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Narwhal	MODERN SPECIES	307	FGFRL1 (ENSMMNG00015009082) #8	ENSMMNG00015009070 #9	SPON2 (ENSMMNG00015009059) #10	CTBP1 (ENSMMNG00015009032) #11	ENSMMNG00015009007	MAEA (ENSMMNG00015008969) #13	UVSSA (ENSMMNG00015008918) #14	NKX1-1 (ENSMMNG00015008894) #15	FAM53A (ENSMMNG00015008881) #16	SLBP (ENSMMNG00015008857) #17	TMEM129 (ENSMMNG00015008823) #18	TACC3 (ENSMMNG00015008798) #19	FGFR3 (ENSMMNG00015008748) #20	LETM1 (ENSMMNG00015008712) #21	ENSMMNG00015008696	NSD2 (ENSMMNG00015008622) #22	NELFA (ENSMMNG00015008560) #23	C4orf48 (ENSMMNG00015008532) #24	ENSMMNG00015008518 #25	POLN (ENSMMNG00015008466) #28	HAUS3 (ENSMMNG00015008433) #29	MXD4 (ENSMMNG00015008416) #30	ENSMMNG00015008390 #31	ENSMMNG00015008379 #31	CFAP99 (ENSMMNG00015008357) #33	RNF4 (ENSMMNG00015008314) #34	FAM193A (ENSMMNG00015008181) #35	TNIP2 (ENSMMNG00015008095) #36	SH3BP2 (ENSMMNG00015008021) #37	ADD1 (ENSMMNG00015007965)	MFSD10 (ENSMMNG00015007848)
Beluga whale	MODERN SPECIES	77	FGFRL1 (ENSDLEG00000016841) #8	ENSDLEG00000016829 #9	SPON2 (ENSDLEG00000016801) #10	CTBP1 (ENSDLEG00000016785) #11	ENSDLEG00000016755	MAEA (ENSDLEG00000016731) #13	UVSSA (ENSDLEG00000016715) #14	NKX1-1 (ENSDLEG00000016706) #15	FAM53A (ENSDLEG00000016696) #16	SLBP (ENSDLEG00000016673) #17	TMEM129 (ENSDLEG00000016657) #18	ENSDLEG00000016641 #19	FGFR3 (ENSDLEG00000016588) #20	LETM1 (ENSDLEG00000016566) #21	ENSDLEG00000016553	NSD2 (ENSDLEG00000016523) #22	NELFA (ENSDLEG00000016475) #23	C4orf48 (ENSDLEG00000016453) #24	NAT8L (ENSDLEG00000016443) #25	POLN (ENSDLEG00000016047) #28	HAUS3 (ENSDLEG00000016006) #29	MXD4 (ENSDLEG00000015987) #30	ENSDLEG00000015973	ENSDLEG00000015957 #31	CFAP99 (ENSDLEG00000015790) #33	RNF4 (ENSDLEG00000015767) #34	FAM193A (ENSDLEG00000015632) #35	TNIP2 (ENSDLEG00000015610) #36	SH3BP2 (ENSDLEG00000015385) #37	ADD1 (ENSDLEG00000015327)	ENSDLEG00000015260
Vaquita	MODERN SPECIES	16	SLC26A1 (ENSPSNG00000018577)	FGFRL1 (ENSPSNG00000018608) #8	ENSPSNG00000018647 #9	SPON2 (ENSPSNG00000018706) #10	CTBP1 (ENSPSNG00000018755) #11	ENSPSNG00000018860	MAEA (ENSPSNG00000018923) #13	UVSSA (ENSPSNG00000019027) #14	NKX1-1 (ENSPSNG00000019051) #15	FAM53A (ENSPSNG00000019099) #16	SLBP (ENSPSNG00000019131) #17	ENSPSNG00000019238 #18	FGFR3 (ENSPSNG00000019417) #20	LETM1 (ENSPSNG00000019524) #21	ENSPSNG00000019562	NSD2 (ENSPSNG00000019603) #22	NELFA (ENSPSNG00000019706) #23	C4orf48 (ENSPSNG00000019794) #24	NAT8L (ENSPSNG00000019815) #25	POLN (ENSPSNG00000019912) #28	HAUS3 (ENSPSNG00000019961) #29	MXD4 (ENSPSNG00000020007) #30	ENSPSNG00000020034 #31	ENSPSNG00000020080 #31	CFAP99 (ENSPSNG00000020141) #33	RNF4 (ENSPSNG00000020234) #34	FAM193A (ENSPSNG00000020338) #35	TNIP2 (ENSPSNG00000020458) #36	SH3BP2 (ENSPSNG00000020519) #37	ADD1 (ENSPSNG00000020716)	ENSPSNG00000020824
Sperm whale	MODERN SPECIES	18	ENSPCTG00005007620 #9	SPON2 (ENSPCTG00005007593) #10	CTBP1 (ENSPCTG00005007566) #11	ENSPCTG00005007552	MAEA (ENSPCTG00005007348) #13	UVSSA (ENSPCTG00005007289) #14	NKX1-1 (ENSPCTG00005007269) #15	FAM53A (ENSPCTG00005007252) #16	SLBP (ENSPCTG00005007183) #17	TMEM129 (ENSPCTG00005007122) #18	TACC3 (ENSPCTG00005007081) #19	FGFR3 (ENSPCTG00005006670) #20	LETM1 (ENSPCTG00005006566) #21	ENSPCTG00005006543	ENSPCTG00005006514	NSD2 (ENSPCTG00005006400) #22	NELFA (ENSPCTG00005006320) #23	ENSPCTG00005006283 #24	NAT8L (ENSPCTG00005006259) #25	ENSPCTG00005006248	POLN (ENSPCTG00005006144) #28	HAUS3 (ENSPCTG00005006113) #29	ENSPCTG00005019696	MXD4 (ENSPCTG00005019644) #30	ENSPCTG00005019596 #31	ENSPCTG00005019514 #31	CFAP99 (ENSPCTG00005019388) #33	RNF4 (ENSPCTG00005019311) #34	FAM193A (ENSPCTG00005019111) #35	ENSPCTG00005018969	SH3BP2 (ENSPCTG00005018670) #37
Atlantogenata	ANCESTRAL SPECIES	108	ENSGT01100000263544.c.a.a.b	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31
Xenarthra	ANCESTRAL SPECIES	1658																ENSGT00940000157429 #22	ENSGT00390000005342 #23
Sloth	MODERN SPECIES	976																ENSCHOG00000005628 #22
Armadillo	MODERN SPECIES	1681																NSD2 (ENSDNOG00000010075) #22	NELFA (ENSDNOG00000041985) #23
Afrotheria	ANCESTRAL SPECIES	135	ENSGT01100000263544.c.a.a.b	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31
Afrotheria_a	ANCESTRAL SPECIES	137	ENSGT01100000263544.c.a.a.b	ENSGT00390000015494 #7	ENSGT00940000156736 #8	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00390000000377 #14	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.b.a #21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31
Elephant	MODERN SPECIES	164	SLC26A1 (ENSLAFG00000012880)	IDUA (ENSLAFG00000012872) #7	FGFRL1 (ENSLAFG00000012522) #8	ENSLAFG00000020574 #9	SPON2 (ENSLAFG00000031358) #10	CTBP1 (ENSLAFG00000016498) #11	MAEA (ENSLAFG00000001960) #13	UVSSA (ENSLAFG00000013335) #14	ENSLAFG00000025171 #15	FAM53A (ENSLAFG00000000267) #16	SLBP (ENSLAFG00000012933) #17	TMEM129 (ENSLAFG00000021484) #18	ENSLAFG00000005224 #19	FGFR3 (ENSLAFG00000012619) #20	LETM1 (ENSLAFG00000022179) #21	NSD2 (ENSLAFG00000008162) #22	NELFA (ENSLAFG00000008168) #23	C4orf48 (ENSLAFG00000029945) #24	NAT8L (ENSLAFG00000030733) #25	POLN (ENSLAFG00000014515) #28	HAUS3 (ENSLAFG00000020863) #29	MXD4 (ENSLAFG00000026709) #30	ENSLAFG00000001042 #31	RNF4 (ENSLAFG00000007382) #34	ENSLAFG00000004078 #35	ENSLAFG00000028553 #35	ENSLAFG00000027379	SH3BP2 (ENSLAFG00000016902) #37	ADD1 (ENSLAFG00000028230)	ENSLAFG00000029996	NOP14 (ENSLAFG00000017989)
Hyrax	MODERN SPECIES	897																NSD2 (ENSPCAG00000006545) #22	NELFA (ENSPCAG00000006671) #23
Tenrec	MODERN SPECIES	1194																NSD2 (ENSETEG00000003950) #22
Marsupialia	ANCESTRAL SPECIES	7	ENSGT00510000047107.B	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Opossum	MODERN SPECIES	4	ENSMODG00000042625	FGFRL1 (ENSMODG00000004433) #8	ENSMODG00000027834	ENSMODG00000004399 #9	SPON2 (ENSMODG00000004394) #10	CTBP1 (ENSMODG00000004380) #11	MAEA (ENSMODG00000004354) #13	ENSMODG00000004336	FAM53A (ENSMODG00000004313) #16	SLBP (ENSMODG00000004304) #17	TMEM129 (ENSMODG00000004290) #18	ENSMODG00000004284 #19	FGFR3 (ENSMODG00000004268) #20	ENSMODG00000004184	ENSMODG00000004250 ##21	NSD2 (ENSMODG00000004162) #22	NELFA (ENSMODG00000004110) #23	ENSMODG00000024702 #24	NAT8L (ENSMODG00000004088) #25	POLN (ENSMODG00000004074) #28	MXD4 (ENSMODG00000004033) #30	ZFYVE28 (ENSMODG00000004017) #31	ENSMODG00000050224 #33	RNF4 (ENSMODG00000003938) #34	FAM193A (ENSMODG00000003925) #35	TNIP2 (ENSMODG00000003892) #36	SH3BP2 (ENSMODG00000003843) #37	ADD1 (ENSMODG00000003815)	ENSMODG00000003757	NOP14 (ENSMODG00000003736)	ENSMODG00000051167
Marsupialia_b	ANCESTRAL SPECIES	8	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000158459.d	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342.l.a #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Diprotodontia	ANCESTRAL SPECIES	10	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000158459.d	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342.l.a #23	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459	ENSGT00940000160151
Diprotodontia_a	ANCESTRAL SPECIES	12	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000158459.d	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342.l.a #23	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459	ENSGT00940000160151
Common wonbat	MODERN SPECIES	1054	SLC26A1 (ENSVURG00010021160)	ENSVURG00010021170	FGFRL1 (ENSVURG00010021177) #8	ENSVURG00010021189 #10	CTBP1 (ENSVURG00010021201) #11	MAEA (ENSVURG00010021222) #13	ENSVURG00010021231	NKX1-1 (ENSVURG00010021242) #15	FAM53A (ENSVURG00010021247) #16	SLBP (ENSVURG00010021255) #17	TMEM129 (ENSVURG00010021261) #18	ENSVURG00010021263 #19	ENSVURG00010021279	FGFR3 (ENSVURG00010021287) #20	ENSVURG00010021331 ##21	NSD2 (ENSVURG00010021411) #22	ENSVURG00010021490	ENSVURG00010021495 #23	ENSVURG00010021502 #25	HAUS3 (ENSVURG00010021506) #29	MXD4 (ENSVURG00010021518) #30	ENSVURG00010021528 #31	ENSVURG00010021535 #33	RNF4 (ENSVURG00010021546) #34	FAM193A (ENSVURG00010021562) #35	TNIP2 (ENSVURG00010021586) #36	SH3BP2 (ENSVURG00010021621) #37	ADD1 (ENSVURG00010021640)	ENSVURG00010021651	NOP14 (ENSVURG00010021659)	GRK4 (ENSVURG00010021670)
koala	MODERN SPECIES	43			ENSPCIG00000013555	ENSPCIG00000013556 #9	SPON2 (ENSPCIG00000013557) #10	CTBP1 (ENSPCIG00000013559) #11	MAEA (ENSPCIG00000013562) #13	ENSPCIG00000013563	NKX1-1 (ENSPCIG00000013564) #15	FAM53A (ENSPCIG00000013572) #16	SLBP (ENSPCIG00000013575) #17	TMEM129 (ENSPCIG00000013578) #18	ENSPCIG00000013274	FGFR3 (ENSPCIG00000001901) #20	ENSPCIG00000002025 ##21	NSD2 (ENSPCIG00000002101) #22	NELFA (ENSPCIG00000033023) #23	ENSPCIG00000037120	NAT8L (ENSPCIG00000002186) #25	ENSPCIG00000028500	POLN (ENSPCIG00000028499) #28	HAUS3 (ENSPCIG00000032540) #29	MXD4 (ENSPCIG00000028502) #30	ZFYVE28 (ENSPCIG00000028505) #31	ENSPCIG00000028507 #33	RNF4 (ENSPCIG00000028508) #34	FAM193A (ENSPCIG00000028509) #35	TNIP2 (ENSPCIG00000001126) #36	SH3BP2 (ENSPCIG00000028511) #37	ADD1 (ENSPCIG00000028514)	ENSPCIG00000028515
Wallaby	MODERN SPECIES	1867																NSD2 (ENSMEUG00000009817) #22
Tasmanian devil	MODERN SPECIES	5	ENSSHAG00000014584	FGFRL1 (ENSSHAG00000013968) #8	ENSSHAG00000012564	ENSSHAG00000012404 #9	SPON2 (ENSSHAG00000012328) #10	CTBP1 (ENSSHAG00000010717) #11	MAEA (ENSSHAG00000006152) #13	ENSSHAG00000003641	FAM53A (ENSSHAG00000014457) #16	SLBP (ENSSHAG00000025869) #17	TMEM129 (ENSSHAG00000013825) #18	ENSSHAG00000013631 #19	ENSSHAG00000027667	FGFR3 (ENSSHAG00000009751) #20	ENSSHAG00000008701 ##21	NSD2 (ENSSHAG00000006750) #22	NELFA (ENSSHAG00000006075) #23	ENSSHAG00000023580 #24	NAT8L (ENSSHAG00000003078) #25	ENSSHAG00000012083 #29	ENSSHAG00000028807 #30	ZFYVE28 (ENSSHAG00000010322) #31	ENSSHAG00000026056 #33	FAM193A (ENSSHAG00000004929) #35	TNIP2 (ENSSHAG00000003911) #36	SH3BP2 (ENSSHAG00000001849) #37	ENSSHAG00000021157	ADD1 (ENSSHAG00000011634)	ENSSHAG00000011412	NOP14 (ENSSHAG00000010914)	GRK4 (ENSSHAG00000010073)
Platypus	MODERN SPECIES	15													ENSOANG00000046409 #19	FGFR3 (ENSOANG00000003354) #20	LETM1 (ENSOANG00000005820) #21	NSD2 (ENSOANG00000014321) #22	NELFA (ENSOANG00000044855) #23	NAT8L (ENSOANG00000039001) #25	MXD4 (ENSOANG00000043646) #30	ENSOANG00000041013	ZFYVE28 (ENSOANG00000039812) #31	ENSOANG00000049568 #33	RNF4 (ENSOANG00000045071) #34	FAM193A (ENSOANG00000015175) #35	ENSOANG00000029063 #36	SH3BP2 (ENSOANG00000011388) #37	ADD1 (ENSOANG00000001783)	ENSOANG00000001782	NOP14 (ENSOANG00000005809)	GRK4 (ENSOANG00000021583)	HTT (ENSOANG00000041824)
Sauria	ANCESTRAL SPECIES	6	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738.s #17	ENSGT00390000008738.t #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904.o #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Archelosauria	ANCESTRAL SPECIES	4	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738.s #17	ENSGT00390000008738.t #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904.o #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Archosauria	ANCESTRAL SPECIES	1	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738.s #17	ENSGT00390000008738.t #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904.o #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Aves	ANCESTRAL SPECIES	3	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738.s #17	ENSGT00390000008738.t #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904.o #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Neognathae	ANCESTRAL SPECIES	5	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738.s #17	ENSGT00390000008738.t #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904.o #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Neognathae_b	ANCESTRAL SPECIES	4	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738.s #17	ENSGT00390000008738.t #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904.o #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Passeriformes	ANCESTRAL SPECIES	4	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738.s #17	ENSGT00390000008738.t #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904.o #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Great tit	MODERN SPECIES	23	RNF212 (ENSPMJG00000016778)	ENSPMJG00000016777 #9	SPON2 (ENSPMJG00000016776) #10	CTBP1 (ENSPMJG00000016774) #11	MAEA (ENSPMJG00000016773) #13	ENSPMJG00000016772	NKX1-1 (ENSPMJG00000016771) #15	FAM53A (ENSPMJG00000016765) #16	SLBP (ENSPMJG00000016763) #17	TMEM129 (ENSPMJG00000016762) #18	TACC3 (ENSPMJG00000016761) #19	ENSPMJG00000016756	FGFR3 (ENSPMJG00000016755) #20	ENSPMJG00000016753 ##21	NELFA (ENSPMJG00000016751) #23	NSD2 (ENSPMJG00000016750) #22	ENSPMJG00000016749 #24	NAT8L (ENSPMJG00000016748) #25	POLN (ENSPMJG00000016747) #28	HAUS3 (ENSPMJG00000016746) #29	MXD4 (ENSPMJG00000016745) #30	ZFYVE28 (ENSPMJG00000016738) #31	CFAP99 (ENSPMJG00000016737) #33	RNF4 (ENSPMJG00000016736) #34	FAM193A (ENSPMJG00000016722) #35	TNIP2 (ENSPMJG00000016720) #36	SH3BP2 (ENSPMJG00000016718) #37	ADD1 (ENSPMJG00000016716)	ENSPMJG00000016715	NOP14 (ENSPMJG00000016714)	GRK4 (ENSPMJG00000016713)
Passeriformes_d	ANCESTRAL SPECIES	4	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738.s #17	ENSGT00390000008738.t #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904.o #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581.a	ENSGT00830000128422	ENSGT00390000017459
Passeriformes_g	ANCESTRAL SPECIES	5	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738.s #17	ENSGT00390000008738.t #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904.o #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581.a	ENSGT00830000128422	ENSGT00390000017459
Passeroidea	ANCESTRAL SPECIES	4	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738.s #17	ENSGT00390000008738.t #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT01080000257700	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904.o #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581.a	ENSGT00830000128422	ENSGT00390000017459
Common canary	MODERN SPECIES	2	FGFRL1 (ENSSCAG00000014969) #8	ENSSCAG00000014981 #9	SPON2 (ENSSCAG00000014992) #10	CTBP1 (ENSSCAG00000015001) #11	MAEA (ENSSCAG00000015016) #13	ENSSCAG00000015024	NKX1-1 (ENSSCAG00000015033) #15	FAM53A (ENSSCAG00000015042) #16	SLBP (ENSSCAG00000015046) #17	ENSSCAG00000015050 #17	TMEM129 (ENSSCAG00000015058) #18	TACC3 (ENSSCAG00000015066) #19	FGFR3 (ENSSCAG00000015145) #20	ENSSCAG00000015296	ENSSCAG00000015304 ##21	NSD2 (ENSSCAG00000015307) #22	NELFA (ENSSCAG00000015311) #23	ENSSCAG00000015313 #24	C4orf48 (ENSSCAG00000015314) #24	NAT8L (ENSSCAG00000015317) #25	HAUS3 (ENSSCAG00000015319) #29	MXD4 (ENSSCAG00000015320) #30	ZFYVE28 (ENSSCAG00000015322) #31	CFAP99 (ENSSCAG00000015324) #33	RNF4 (ENSSCAG00000015329) #34	FAM193A (ENSSCAG00000015363) #35	TNIP2 (ENSSCAG00000015434) #36	SH3BP2 (ENSSCAG00000015437) #37	ADD1 (ENSSCAG00000015448)	ENSSCAG00000015458	NOP14 (ENSSCAG00000015461)
Zebra finch	MODERN SPECIES	25	RNF212 (ENSTGUG00000010685)	ENSTGUG00000010674 #9	SPON2 (ENSTGUG00000010671) #10	CTBP1 (ENSTGUG00000010662) #11	MAEA (ENSTGUG00000010646) #13	ENSTGUG00000010640	NKX1-1 (ENSTGUG00000029299) #15	FAM53A (ENSTGUG00000010633) #16	SLBP (ENSTGUG00000010626) #17	ENSTGUG00000026053 #17	TMEM129 (ENSTGUG00000010623) #18	TACC3 (ENSTGUG00000010612) #19	FGFR3 (ENSTGUG00000010583) #20	ENSTGUG00000010578	ENSTGUG00000010569 ##21	NSD2 (ENSTGUG00000010558) #22	NELFA (ENSTGUG00000010548) #23	ENSTGUG00000022999 #24	C4orf48 (ENSTGUG00000010545) #24	NAT8L (ENSTGUG00000027909) #25	POLN (ENSTGUG00000010536) #28	MXD4 (ENSTGUG00000010530) #30	ZFYVE28 (ENSTGUG00000010524) #31	CFAP99 (ENSTGUG00000010519) #33	RNF4 (ENSTGUG00000027704) #34	FAM193A (ENSTGUG00000010507) #35	TNIP2 (ENSTGUG00000010505) #36	SH3BP2 (ENSTGUG00000010489) #37	ADD1 (ENSTGUG00000010471)	ENSTGUG00000010470	NOP14 (ENSTGUG00000010455)
Medium ground finch	MODERN SPECIES	75																NSD2 (ENSGFOG00000008150) #22	NELFA (ENSGFOG00000008173) #23	ENSGFOG00000008178 #24	C4orf48 (ENSGFOG00000008181) #24	NAT8L (ENSGFOG00000008186) #25	HAUS3 (ENSGFOG00000008190) #29	MXD4 (ENSGFOG00000008198) #30	ZFYVE28 (ENSGFOG00000008209) #31	CFAP99 (ENSGFOG00000008238) #33	RNF4 (ENSGFOG00000008275) #34	FAM193A (ENSGFOG00000008287) #35	TNIP2 (ENSGFOG00000008314) #36	SH3BP2 (ENSGFOG00000008338) #37	ENSGFOG00000008355	ENSGFOG00000008390	NOP14 (ENSGFOG00000008399)
Flycatcher	MODERN SPECIES	22	FGFRL1 (ENSFALG00000010071) #8	RNF212 (ENSFALG00000026442)	ENSFALG00000010064 #9	SPON2 (ENSFALG00000010062) #10	CTBP1 (ENSFALG00000010053) #11	MAEA (ENSFALG00000010037) #13	ENSFALG00000010020	ENSFALG00000024515	FAM53A (ENSFALG00000010014) #16	SLBP (ENSFALG00000010003) #17	ENSFALG00000009994 #17	TMEM129 (ENSFALG00000009990) #18	TACC3 (ENSFALG00000009974) #19	FGFR3 (ENSFALG00000009957) #20	ENSFALG00000009940 ##21	NSD2 (ENSFALG00000009928) #22	NELFA (ENSFALG00000024492) #23	ENSFALG00000023813 #24	C4orf48 (ENSFALG00000009893) #24	NAT8L (ENSFALG00000009890) #25	POLN (ENSFALG00000009880) #28	HAUS3 (ENSFALG00000009872) #29	MXD4 (ENSFALG00000028128) #30	ZFYVE28 (ENSFALG00000009861) #31	CFAP99 (ENSFALG00000009853) #33	RNF4 (ENSFALG00000028670) #34	FAM193A (ENSFALG00000009833) #35	TNIP2 (ENSFALG00000009830) #36	SH3BP2 (ENSFALG00000009826) #37	ADD1 (ENSFALG00000009811)	ENSFALG00000009804
Neognathae_c	ANCESTRAL SPECIES	3	ENSGT00940000161151	ENSGT00940000156736 #8	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738.s #17	ENSGT00390000008738.t #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00390000011904.o #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318.l.a #34	ENSGT00390000010318.l.b #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Kakapo	MODERN SPECIES	24	FGFRL1 (ENSSHBG00005013918) #8	ENSSHBG00005013933 #9	SPON2 (ENSSHBG00005013942) #10	CTBP1 (ENSSHBG00005013962) #11	MAEA (ENSSHBG00005014007) #13	ENSSHBG00005014033	ENSSHBG00005014047	NKX1-1 (ENSSHBG00005014065) #15	FAM53A (ENSSHBG00005014082) #16	SLBP (ENSSHBG00005014090) #17	ENSSHBG00005014102 #17	TMEM129 (ENSSHBG00005014117) #18	TACC3 (ENSSHBG00005014126) #19	FGFR3 (ENSSHBG00005014171) #20	ENSSHBG00005014181 ##21	NSD2 (ENSSHBG00005014199) #22	NELFA (ENSSHBG00005014227) #23	C4orf48 (ENSSHBG00005014241) #24	NAT8L (ENSSHBG00005014256) #25	HAUS3 (ENSSHBG00005014273) #29	MXD4 (ENSSHBG00005014280) #30	ENSSHBG00005014294 #31	ENSSHBG00005014299 #31	CFAP99 (ENSSHBG00005014309) #33	RNF4 (ENSSHBG00005014316) #34	ENSSHBG00005014326 #34	ENSSHBG00005014338 #34	ENSSHBG00005014358 #34	FAM193A (ENSSHBG00005014440) #35	TNIP2 (ENSSHBG00005015999) #36	SH3BP2 (ENSSHBG00005016003) #37
Golden eagle	MODERN SPECIES		ATOH8 (ENSACCG00020000089)	FGFRL1 (ENSACCG00020000090) #8	ENSACCG00020000091 #9	SPON2 (ENSACCG00020000092) #10	CTBP1 (ENSACCG00020000093) #11	MAEA (ENSACCG00020000094) #13	ENSACCG00020000095	NKX1-1 (ENSACCG00020000096) #15	FAM53A (ENSACCG00020000097) #16	SLBP (ENSACCG00020000098) #17	ENSACCG00020000099 #17	TMEM129 (ENSACCG00020000100) #18	TACC3 (ENSACCG00020000101) #19	FGFR3 (ENSACCG00020000102) #20	ENSACCG00020000103 ##21	NSD2 (ENSACCG00020000104) #22	NELFA (ENSACCG00020000106) #23	ENSACCG00020000107 #24	C4orf48 (ENSACCG00020000108) #24	ENSACCG00020000109 #25	ENSACCG00020000110 #25	HAUS3 (ENSACCG00020000111) #29	MXD4 (ENSACCG00020000112) #30	ZFYVE28 (ENSACCG00020000113) #31	CFAP99 (ENSACCG00020000114) #33	ENSACCG00020000115 #34	ENSACCG00020000116 #34	FAM193A (ENSACCG00020000117) #35	TNIP2 (ENSACCG00020000118) #36	SH3BP2 (ENSACCG00020000119) #37	ADD1 (ENSACCG00020000120)
Galloanserae	ANCESTRAL SPECIES	5	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738.s #17	ENSGT00390000008738.t #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904.o #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Anatidae	ANCESTRAL SPECIES	2	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738.s #17	ENSGT00390000008738.t #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904.o #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Pink-footed goose	MODERN SPECIES	7	RNF212 (ENSABRG00000009079)	ENSABRG00000009069 #9	SPON2 (ENSABRG00000009053) #10	CTBP1 (ENSABRG00000009016) #11	MAEA (ENSABRG00000008991) #13	ENSABRG00000008962	NKX1-1 (ENSABRG00000008955) #15	FAM53A (ENSABRG00000008927) #16	SLBP (ENSABRG00000008914) #17	ENSABRG00000008878 #17	TMEM129 (ENSABRG00000008871) #18	TACC3 (ENSABRG00000008855) #19	ENSABRG00000008817	FGFR3 (ENSABRG00000008800) #20	ENSABRG00000008782 ##21	NSD2 (ENSABRG00000008744) #22	NELFA (ENSABRG00000008734) #23	ENSABRG00000008727 #24	NAT8L (ENSABRG00000008714) #25	POLN (ENSABRG00000008656) #28	HAUS3 (ENSABRG00000008704) #29	MXD4 (ENSABRG00000008646) #30	ZFYVE28 (ENSABRG00000008507) #31	CFAP99 (ENSABRG00000008431) #33	RNF4 (ENSABRG00000008422) #34	FAM193A (ENSABRG00000007852) #35	TNIP2 (ENSABRG00000007791) #36	SH3BP2 (ENSABRG00000007608) #37	ADD1 (ENSABRG00000006412)	ENSABRG00000006173	NOP14 (ENSABRG00000005884)
Duck	MODERN SPECIES	22	FGFRL1 (ENSAPLG00000014983) #8	ENSAPLG00000019361	ENSAPLG00000019372	ENSAPLG00000015003 #9	SPON2 (ENSAPLG00000015017) #10	CTBP1 (ENSAPLG00000015635) #11	MAEA (ENSAPLG00000015852) #13	ENSAPLG00000015894	ENSAPLG00000021364	FAM53A (ENSAPLG00000015975) #16	SLBP (ENSAPLG00000015989) #17	TMEM129 (ENSAPLG00000016182) #18	TACC3 (ENSAPLG00000016198) #19	FGFR3 (ENSAPLG00000016333) #20	ENSAPLG00000003508 ##21	NSD2 (ENSAPLG00000003770) #22	NELFA (ENSAPLG00000004120) #23	ENSAPLG00000016870 #24	C4orf48 (ENSAPLG00000027604) #24	NAT8L (ENSAPLG00000004458) #25	POLN (ENSAPLG00000004531) #28	HAUS3 (ENSAPLG00000004991) #29	MXD4 (ENSAPLG00000004997) #30	ZFYVE28 (ENSAPLG00000004999) #31	CFAP99 (ENSAPLG00000005144) #33	RNF4 (ENSAPLG00000005244) #34	FAM193A (ENSAPLG00000005276) #35	TNIP2 (ENSAPLG00000005556) #36	SH3BP2 (ENSAPLG00000005759) #37	ADD1 (ENSAPLG00000006148)	ENSAPLG00000029573
Phasianidae	ANCESTRAL SPECIES	2	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738.s #17	ENSGT00390000008738.t #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880.j #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904.o #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Phasianidae_b	ANCESTRAL SPECIES	4	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738.s #17	ENSGT00390000008738.t #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880.j #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904.o #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Turkey	DUPLICATION
Turkey	MODERN SPECIES	24	ENSMGAG00000012986	ENSMGAG00000013006 #37	ENSMGAG00000013010 #36	ENSMGAG00000013014 #35	ENSMGAG00000017780 #34	ENSMGAG00000013021 #33	ENSMGAG00000013023 #31	ENSMGAG00000020900 #31	ENSMGAG00000021919	ENSMGAG00000017584 #30	ENSMGAG00000013033 #29	NAT8L (ENSMGAG00000016877) #25	ENSMGAG00000013044 #23	ENSMGAG00000020055 #24	ENSMGAG00000019205 #24	ENSMGAG00000013051 #22	ENSMGAG00000020247 #22	ENSMGAG00000013057 ##21	ENSMGAG00000013059 #20	ENSMGAG00000018675	ENSMGAG00000020226	ENSMGAG00000017730	ENSMGAG00000012664	ENSMGAG00000021515	ENSMGAG00000017053	ENSMGAG00000019461	ENSMGAG00000012687	ENSMGAG00000016617	WDR1 (ENSMGAG00000012690)	ENSMGAG00000022219	ENSMGAG00000012700
Turkey	MODERN SPECIES	24	ENSMGAG00000013006 #37	ENSMGAG00000013010 #36	ENSMGAG00000013014 #35	ENSMGAG00000017780 #34	ENSMGAG00000013021 #33	ENSMGAG00000013023 #31	ENSMGAG00000020900 #31	ENSMGAG00000021919	ENSMGAG00000017584 #30	ENSMGAG00000013033 #29	NAT8L (ENSMGAG00000016877) #25	ENSMGAG00000013044 #23	ENSMGAG00000020055 #24	ENSMGAG00000019205 #24	ENSMGAG00000013051 #22	ENSMGAG00000020247 #22	ENSMGAG00000013057 ##21	ENSMGAG00000013059 #20	ENSMGAG00000018675	ENSMGAG00000020226	ENSMGAG00000017730	ENSMGAG00000012664	ENSMGAG00000021515	ENSMGAG00000017053	ENSMGAG00000019461	ENSMGAG00000012687	ENSMGAG00000016617	WDR1 (ENSMGAG00000012690)	ENSMGAG00000022219	ENSMGAG00000012700	ENSMGAG00000012697
Chicken	MODERN SPECIES	33	RNF212 (ENSGALG00010017689)	TMED11 (ENSGALG00010017682) #9	SPON2 (ENSGALG00010017676) #10	CTBP1 (ENSGALG00010017665) #11	MAEA (ENSGALG00010017646) #13	UVSSA (ENSGALG00010016107)	NKX1-1 (ENSGALG00010016036) #15	FAM53A (ENSGALG00010016631) #16	SLBP (ENSGALG00010016616) #17	ENSGALG00010016603 #17	TMEM129 (ENSGALG00010016592) #18	TACC3 (ENSGALG00010016211) #19	FGFR3 (ENSGALG00010016940) #20	ENSGALG00010016933	LETM1 (ENSGALG00010016924) ##21	NSD2 (ENSGALG00010016910) #22	NELFA (ENSGALG00010016741) #23	ENSGALG00010016735 #24	C4orf48 (ENSGALG00010016731) #24	NAT8L (ENSGALG00010017631) #25	POLN (ENSGALG00010017619) #28	HAUS3 (ENSGALG00010017613) #29	MXD4 (ENSGALG00010017600) #30	ZFYVE28 (ENSGALG00010017586) #31	CFAP99 (ENSGALG00010017561) #33	RNF4 (ENSGALG00010017547) #34	FAM193A (ENSGALG00010017533) #35	TNIP2 (ENSGALG00010017513) #36	SH3BP2 (ENSGALG00010017464) #37	ADD1 (ENSGALG00010016011)	ENSGALG00010015971
Japanese quail	MODERN SPECIES	22	FGFRL1 (ENSCJPG00005004823) #8	RNF212 (ENSCJPG00005004815)	ENSCJPG00005004814 #9	SPON2 (ENSCJPG00005004812) #10	CTBP1 (ENSCJPG00005004796) #11	MAEA (ENSCJPG00005004779) #13	ENSCJPG00005004776	NKX1-1 (ENSCJPG00005004773) #15	FAM53A (ENSCJPG00005004768) #16	SLBP (ENSCJPG00005004762) #17	ENSCJPG00005004758 #17	TMEM129 (ENSCJPG00005004755) #18	TACC3 (ENSCJPG00005004752) #19	ENSCJPG00005001291 #20	ENSCJPG00005001087 ##21	NSD2 (ENSCJPG00005000902) #22	NELFA (ENSCJPG00005000857) #23	ENSCJPG00005000849 #24	C4orf48 (ENSCJPG00005000845) #24	NAT8L (ENSCJPG00005000839) #25	POLN (ENSCJPG00005000822) #28	HAUS3 (ENSCJPG00005000834) #29	MXD4 (ENSCJPG00005000809) #30	ZFYVE28 (ENSCJPG00005000799) #31	CFAP99 (ENSCJPG00005000780) #33	RNF4 (ENSCJPG00005000772) #34	FAM193A (ENSCJPG00005000765) #35	TNIP2 (ENSCJPG00005000763) #36	SH3BP2 (ENSCJPG00005000067) #37	ADD1 (ENSCJPG00005019167)	ENSCJPG00005019166
African ostrich	MODERN SPECIES	1016	ENSSCUG00000015450	FGFRL1 (ENSSCUG00000015454) #8	ENSSCUG00000015455 #9	SPON2 (ENSSCUG00000015460) #10	CTBP1 (ENSSCUG00000015468) #11	MAEA (ENSSCUG00000015471) #13	ENSSCUG00000015472	FAM53A (ENSSCUG00000015478) #16	SLBP (ENSSCUG00000015479) #17	ENSSCUG00000015480 #17	TMEM129 (ENSSCUG00000015481) #18	TACC3 (ENSSCUG00000015483) #19	ENSSCUG00000015487	FGFR3 (ENSSCUG00000015489) #20	ENSSCUG00000015494 ##21	NSD2 (ENSSCUG00000015496) #22	NELFA (ENSSCUG00000015506) #23	ENSSCUG00000015507 #24	ENSSCUG00000015508	C4orf48 (ENSSCUG00000015511) #24	ENSSCUG00000015512	NAT8L (ENSSCUG00000015515) #25	POLN (ENSSCUG00000015522) #28	HAUS3 (ENSSCUG00000015531) #29	MXD4 (ENSSCUG00000015532) #30	ZFYVE28 (ENSSCUG00000015535) #31	CFAP99 (ENSSCUG00000015539) #33	RNF4 (ENSSCUG00000015543) #34	FAM193A (ENSSCUG00000015560) #35	TNIP2 (ENSSCUG00000015578) #36	SH3BP2 (ENSSCUG00000015584) #37
Australian saltwater crocodile	MODERN SPECIES	65	POLR1A (ENSCPRG00005000706)	ST3GAL5 (ENSCPRG00005001127)	FGFRL1 (ENSCPRG00005001162) #8	ENSCPRG00005001189 #9	SPON2 (ENSCPRG00005001192) #10	CTBP1 (ENSCPRG00005001249) #11	MAEA (ENSCPRG00005001284) #13	ENSCPRG00005001306	FAM53A (ENSCPRG00005001335) #16	SLBP (ENSCPRG00005001341) #17	ENSCPRG00005001347 #17	TMEM129 (ENSCPRG00005001354) #18	TACC3 (ENSCPRG00005001402) #19	FGFR3 (ENSCPRG00005001439) #20	ENSCPRG00005001480 ##21	NSD2 (ENSCPRG00005001494) #22	NELFA (ENSCPRG00005001509) #23	C4orf48 (ENSCPRG00005001551) #24	NAT8L (ENSCPRG00005001582) #25	POLN (ENSCPRG00005001601) #28	HAUS3 (ENSCPRG00005001652) #29	MXD4 (ENSCPRG00005001655) #30	ZFYVE28 (ENSCPRG00005001725) #31	CFAP99 (ENSCPRG00005001738) #33	RNF4 (ENSCPRG00005001756) #34	FAM193A (ENSCPRG00005001785) #35	TNIP2 (ENSCPRG00005001931) #36	SH3BP2 (ENSCPRG00005001952) #37	ADD1 (ENSCPRG00005001982)	ENSCPRG00005002033	NOP14 (ENSCPRG00005002058)
Cryptodira	ANCESTRAL SPECIES	2	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #8	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738.s #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880.h #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904.o #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00390000017459
Testudinoidea	ANCESTRAL SPECIES	10	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #8	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738.s #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880.h #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904.o #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581.d	ENSGT00830000128422	ENSGT00390000017459
Emydidae	ANCESTRAL SPECIES	1	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #8	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738.s #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880.h #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904.o #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581.d	ENSGT00830000128422	ENSGT00390000017459
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES	725	ATOH8 (ENSCPBG00000001027)	FGFRL1 (ENSCPBG00000001000) #8	ENSCPBG00000000981 #9	SPON2 (ENSCPBG00000000965) #10	CTBP1 (ENSCPBG00000000892) #11	MAEA (ENSCPBG00000000853) #13	ENSCPBG00000000824	ENSCPBG00000000801	FAM53A (ENSCPBG00000000763) #16	SLBP (ENSCPBG00000000746) #17	TMEM129 (ENSCPBG00000000738) #18	TACC3 (ENSCPBG00000000303) #19	FGFR3 (ENSCPBG00000025109) #20	ENSCPBG00000025105 ##21	ENSCPBG00000025103 #22	ENSCPBG00000025097 #22	NELFA (ENSCPBG00000025095) #23	ENSCPBG00000025091 #24	NAT8L (ENSCPBG00000025087) #25	POLN (ENSCPBG00000025017) #28	HAUS3 (ENSCPBG00000025003) #29	MXD4 (ENSCPBG00000025001) #30	ZFYVE28 (ENSCPBG00000024998) #31	ENSCPBG00000024996
painted turtle	MODERN SPECIES	725	ST3GAL5 (ENSCPBG00000001089)	ATOH8 (ENSCPBG00000001027)	FGFRL1 (ENSCPBG00000001000) #8	ENSCPBG00000000981 #9	SPON2 (ENSCPBG00000000965) #10	CTBP1 (ENSCPBG00000000892) #11	MAEA (ENSCPBG00000000853) #13	ENSCPBG00000000824	ENSCPBG00000000801	FAM53A (ENSCPBG00000000763) #16	SLBP (ENSCPBG00000000746) #17	TMEM129 (ENSCPBG00000000738) #18	TACC3 (ENSCPBG00000000303) #19	FGFR3 (ENSCPBG00000025109) #20	ENSCPBG00000025105 ##21	ENSCPBG00000025103 #22	ENSCPBG00000025097 #22	NELFA (ENSCPBG00000025095) #23	ENSCPBG00000025091 #24	NAT8L (ENSCPBG00000025087) #25	POLN (ENSCPBG00000025017) #28	HAUS3 (ENSCPBG00000025003) #29	MXD4 (ENSCPBG00000025001) #30	ZFYVE28 (ENSCPBG00000024998) #31	ENSCPBG00000024996
Three-toed box turtle	MODERN SPECIES	26	ST3GAL5 (ENSTMTG00000002504)	ATOH8 (ENSTMTG00000002498)	FGFRL1 (ENSTMTG00000002490) #8	ENSTMTG00000002481 #9	SPON2 (ENSTMTG00000002478) #10	CTBP1 (ENSTMTG00000002467) #11	MAEA (ENSTMTG00000002462) #13	ENSTMTG00000002454	NKX1-1 (ENSTMTG00000002450) #15	FAM53A (ENSTMTG00000002446) #16	SLBP (ENSTMTG00000002441) #17	TMEM129 (ENSTMTG00000002438) #18	TACC3 (ENSTMTG00000002422) #19	FGFR3 (ENSTMTG00000002395) #20	ENSTMTG00000002384 ##21	NSD2 (ENSTMTG00000002368) #22	NELFA (ENSTMTG00000002358) #23	ENSTMTG00000002350 #24	C4orf48 (ENSTMTG00000002341) #24	NAT8L (ENSTMTG00000002337) #25	POLN (ENSTMTG00000002310) #28	HAUS3 (ENSTMTG00000002295) #29	MXD4 (ENSTMTG00000002289) #30	ZFYVE28 (ENSTMTG00000002279) #31	CFAP99 (ENSTMTG00000002255) #33	FAM193A (ENSTMTG00000002228) #35	TNIP2 (ENSTMTG00000002209) #36	SH3BP2 (ENSTMTG00000002197) #37	ADD1 (ENSTMTG00000002162)	ENSTMTG00000002147	NOP14 (ENSTMTG00000002129)
Testudinidae	DUPLICATION
Testudinidae	ANCESTRAL SPECIES	11	ENSGT00940000161151	ENSGT00940000156736 #8	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00940000172282	ENSGT00530000063371.A #16	ENSGT00390000008738.s #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880.h #20	ENSGT00950000183167.b ##21	ENSGT00940000157429.m #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00960000189789	ENSGT00950000182932.B #25	ENSGT00390000011904.o #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581.d	ENSGT00830000128422	ENSGT00390000017459
Goode s thornscrub tortoise	MODERN SPECIES	19	ATOH8 (ENSGEVG00005001500)	FGFRL1 (ENSGEVG00005001514) #8	ENSGEVG00005001538 #9	SPON2 (ENSGEVG00005001580) #10	ENSGEVG00005001606	CTBP1 (ENSGEVG00005001634) #11	MAEA (ENSGEVG00005001690) #13	ENSGEVG00005001722	ENSGEVG00005001741	FAM53A (ENSGEVG00005001753) #16	SLBP (ENSGEVG00005001772) #17	TMEM129 (ENSGEVG00005001790) #18	TACC3 (ENSGEVG00005001810) #19	ENSGEVG00005001847 #20	ENSGEVG00005001880 ##21	NSD2 (ENSGEVG00005001909) #22	NELFA (ENSGEVG00005001927) #23	C4orf48 (ENSGEVG00005001945) #24	ENSGEVG00005001957	NAT8L (ENSGEVG00005001962) #25	HAUS3 (ENSGEVG00005001972) #29	MXD4 (ENSGEVG00005001978) #30	ZFYVE28 (ENSGEVG00005002043) #31	CFAP99 (ENSGEVG00005002179) #33	RNF4 (ENSGEVG00005002218) #34	FAM193A (ENSGEVG00005002232) #35	TNIP2 (ENSGEVG00005002252) #36	SH3BP2 (ENSGEVG00005002263) #37	ADD1 (ENSGEVG00005002310)	ENSGEVG00005002372	NOP14 (ENSGEVG00005002393)
Abingdon island giant tortoise	MODERN SPECIES	2611													ENSCABG00000006908	ENSCABG00000006895 #20	ENSCABG00000006879 ##21	ENSCABG00000006873 #22	SLIT2 (ENSCABG00000006833)	PACRGL (ENSCABG00000006828)	KCNIP4 (ENSCABG00000006825)
Testudinidae	ANCESTRAL SPECIES																	ENSGT00940000157429.n #22
Abingdon island giant tortoise	MODERN SPECIES	2434																ENSCABG00000014324 #22
Chinese turtle	MODERN SPECIES	2005										FAM53A (ENSPSIG00000012158) #16	TMEM129 (ENSPSIG00000011706) #18	TACC3 (ENSPSIG00000011605) #19	ENSPSIG00000001733	FGFR3 (ENSPSIG00000009934) #20	ENSPSIG00000008785 ##21	NSD2 (ENSPSIG00000006591) #22	NELFA (ENSPSIG00000017673) #23	ENSPSIG00000017624 #24	C4orf48 (ENSPSIG00000017545) #24	NAT8L (ENSPSIG00000017371) #25	ENSPSIG00000001726	POLN (ENSPSIG00000016926) #28	HAUS3 (ENSPSIG00000016557) #29	MXD4 (ENSPSIG00000016320) #30	ENSPSIG00000015986	ENSPSIG00000001717	ZFYVE28 (ENSPSIG00000015824) #31	CFAP99 (ENSPSIG00000015452) #33	RNF4 (ENSPSIG00000014750) #34	FAM193A (ENSPSIG00000014389) #35	TNIP2 (ENSPSIG00000014357) #36
Lepidosauria	ANCESTRAL SPECIES	80	ENSGT00940000161151	ENSGT00940000156736 #8	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00940000172282	ENSGT00530000063371.A #16	ENSGT00390000008738.s #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904.o #29	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33
tuatara	DUPLICATION
tuatara	MODERN SPECIES	464						CTBP1 (ENSSPUG00000016066) #11	MAEA (ENSSPUG00000016045) #13	ENSSPUG00000016031	ENSSPUG00000016020	FAM53A (ENSSPUG00000016012) #16	SLBP (ENSSPUG00000016007) #17	TMEM129 (ENSSPUG00000015996) #18	TACC3 (ENSSPUG00000015987) #19	FGFR3 (ENSSPUG00000015970) #20	ENSSPUG00000015956 ##21	ENSSPUG00000015928 #22	ENSSPUG00000015905 #22	NELFA (ENSSPUG00000015899) #23	C4orf48 (ENSSPUG00000015889) #24	NAT8L (ENSSPUG00000015883) #25	POLN (ENSSPUG00000015690) #28	HAUS3 (ENSSPUG00000015629) #29	MXD4 (ENSSPUG00000015621) #30	CFAP99 (ENSSPUG00000015612) #33	ENSSPUG00000015598 #31	ENSSPUG00000015592 #31	ENSSPUG00000015587	ENSSPUG00000015581 #31	RNF4 (ENSSPUG00000015569) #34
tuatara	MODERN SPECIES	464					CTBP1 (ENSSPUG00000016066) #11	MAEA (ENSSPUG00000016045) #13	ENSSPUG00000016031	ENSSPUG00000016020	FAM53A (ENSSPUG00000016012) #16	SLBP (ENSSPUG00000016007) #17	TMEM129 (ENSSPUG00000015996) #18	TACC3 (ENSSPUG00000015987) #19	FGFR3 (ENSSPUG00000015970) #20	ENSSPUG00000015956 ##21	ENSSPUG00000015928 #22	ENSSPUG00000015905 #22	NELFA (ENSSPUG00000015899) #23	C4orf48 (ENSSPUG00000015889) #24	NAT8L (ENSSPUG00000015883) #25	POLN (ENSSPUG00000015690) #28	HAUS3 (ENSSPUG00000015629) #29	MXD4 (ENSSPUG00000015621) #30	CFAP99 (ENSSPUG00000015612) #33	ENSSPUG00000015598 #31	ENSSPUG00000015592 #31	ENSSPUG00000015587	ENSSPUG00000015581 #31	RNF4 (ENSSPUG00000015569) #34
Episquamata	ANCESTRAL SPECIES	2	ENSGT00940000158961	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #8	ENSGT00940000159900 #10	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738.s #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000160120 #30	ENSGT00500000045231 #33	ENSGT00940000155716	ENSGT00940000153997.b.a.a	ENSGT00940000157727	ENSGT00890000139463.b.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000160066	ENSGT00940000153692.B	ENSGT00950000183015.B.b	ENSGT00940000156026
Laterata	ANCESTRAL SPECIES		ENSGT00940000158961	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #8	ENSGT00940000159900 #10	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738.s #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000160120 #30	ENSGT00500000045231 #33	ENSGT00940000155716	ENSGT00940000153997.b.a.a	ENSGT00940000157727	ENSGT00890000139463.b.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000160066	ENSGT00940000153692.B	ENSGT00950000183015.B.b	ENSGT00940000156026
Common wall lizard	MODERN SPECIES	13	FGFRL1 (ENSPMRG00000003682) #8	SPON2 (ENSPMRG00000003689) #10	ENSPMRG00000003704 #11	ENSPMRG00000003758 #11	ENSPMRG00000003773 #13	ENSPMRG00000003785 #13	ENSPMRG00000003791	NKX1-1 (ENSPMRG00000003811) #15	ENSPMRG00000003812	FAM53A (ENSPMRG00000003814) #16	SLBP (ENSPMRG00000003818) #17	TMEM129 (ENSPMRG00000003821) #18	TACC3 (ENSPMRG00000003823) #19	FGFR3 (ENSPMRG00000003828) #20	ENSPMRG00000003835 ##21	NSD2 (ENSPMRG00000003856) #22	NELFA (ENSPMRG00000003931) #23	C4orf48 (ENSPMRG00000003949) #24	NAT8L (ENSPMRG00000003953) #25	MXD4 (ENSPMRG00000003956) #30	CFAP99 (ENSPMRG00000003968) #33	ENSPMRG00000003974	ZFAND4 (ENSPMRG00000003978)	ENSPMRG00000003987	ENSPMRG00000003993	ENSPMRG00000003999	ENSPMRG00000004005	ENSPMRG00000004021	RBP3 (ENSPMRG00000004028)	GDF2 (ENSPMRG00000004036)	PTPN20 (ENSPMRG00000004040)
Argentine black and white tegu	MODERN SPECIES	44									GDF2 (ENSSMRG00000022764)	RBP3 (ENSSMRG00000022765)	ENSSMRG00000022766	ENSSMRG00000022767	ENSSMRG00000022768	ENSSMRG00000022769	ENSSMRG00000022771 ##21	NSD2 (ENSSMRG00000022772) #22	NELFA (ENSSMRG00000022773) #23	C4orf48 (ENSSMRG00000022774) #24	NAT8L (ENSSMRG00000022775) #25	ENSSMRG00000022776	ENSSMRG00000022777	FGFR3 (ENSSMRG00000022778) #20	ENSSMRG00000022779	TMEM129 (ENSSMRG00000022780) #18	SLBP (ENSSMRG00000022781) #17	NKX1-1 (ENSSMRG00000022783) #15	ENSSMRG00000022784	MAEA (ENSSMRG00000022785) #13	CTBP1 (ENSSMRG00000022787) #11	SPON2 (ENSSMRG00000022788) #10	FGFRL1 (ENSSMRG00000022790) #8
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00940000159552	ENSGT00390000006051	ENSGT00940000158961	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #8	ENSGT00940000159900 #10	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00390000008738.s #17	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000160120 #30	ENSGT00500000045231 #33	ENSGT00940000155716	ENSGT00940000153997.b.a.a	ENSGT00890000139463.b.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000160066	ENSGT00940000153692.B	ENSGT00950000183015.B.b	ENSGT00940000156026	ENSGT00940000155684
Elapidae	ANCESTRAL SPECIES	13	ENSGT00940000159552	ENSGT00390000006051	ENSGT00940000158961	ENSGT00940000157929	ENSGT00940000161151	ENSGT00940000156736 #8	ENSGT00940000159900 #10	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00390000008738.s #17	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000160120 #30	ENSGT00390000015682	ENSGT00950000182937.A.a	ENSGT00500000044923	ENSGT00940000158274	ENSGT01000000218120	ENSGT00390000014056	ENSGT00940000158057	ENSGT00940000159008	ENSGT00730000111333	ENSGT00390000008566	ENSGT00940000155684
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	5	TPT1 (ENSNNAG00000007771)	SLC25A30 (ENSNNAG00000007807)	ST3GAL5 (ENSNNAG00000007849)	ATOH8 (ENSNNAG00000007882)	FGFRL1 (ENSNNAG00000007904) #8	SPON2 (ENSNNAG00000007927) #10	CTBP1 (ENSNNAG00000007965) #11	ENSNNAG00000008030	MAEA (ENSNNAG00000008048) #13	ENSNNAG00000008082	NKX1-1 (ENSNNAG00000008125) #15	SLBP (ENSNNAG00000008157) #17	ENSNNAG00000008186	FGFR3 (ENSNNAG00000008222) #20	ENSNNAG00000008343 ##21	ENSNNAG00000008402 #22	ENSNNAG00000008473 #22	NELFA (ENSNNAG00000008587) #23	C4orf48 (ENSNNAG00000008605) #24	NAT8L (ENSNNAG00000008658) #25	MXD4 (ENSNNAG00000008676) #30	COG3 (ENSNNAG00000008861)	CHUK (ENSNNAG00000011971)	MTG1 (ENSNNAG00000012981)	PAOX (ENSNNAG00000013002)	ENSNNAG00000013052	CXCL12 (ENSNNAG00000013076)	ERCC6 (ENSNNAG00000013113)	DRGX (ENSNNAG00000013325)	ENSNNAG00000013384	VSTM4 (ENSNNAG00000013423)
Indian cobra	MODERN SPECIES	5	SLC25A30 (ENSNNAG00000007807)	ST3GAL5 (ENSNNAG00000007849)	ATOH8 (ENSNNAG00000007882)	FGFRL1 (ENSNNAG00000007904) #8	SPON2 (ENSNNAG00000007927) #10	CTBP1 (ENSNNAG00000007965) #11	ENSNNAG00000008030	MAEA (ENSNNAG00000008048) #13	ENSNNAG00000008082	NKX1-1 (ENSNNAG00000008125) #15	SLBP (ENSNNAG00000008157) #17	ENSNNAG00000008186	FGFR3 (ENSNNAG00000008222) #20	ENSNNAG00000008343 ##21	ENSNNAG00000008402 #22	ENSNNAG00000008473 #22	NELFA (ENSNNAG00000008587) #23	C4orf48 (ENSNNAG00000008605) #24	NAT8L (ENSNNAG00000008658) #25	MXD4 (ENSNNAG00000008676) #30	COG3 (ENSNNAG00000008861)	CHUK (ENSNNAG00000011971)	MTG1 (ENSNNAG00000012981)	PAOX (ENSNNAG00000013002)	ENSNNAG00000013052	CXCL12 (ENSNNAG00000013076)	ERCC6 (ENSNNAG00000013113)	DRGX (ENSNNAG00000013325)	ENSNNAG00000013384	VSTM4 (ENSNNAG00000013423)	ENSNNAG00000013471
Elapidae_a	ANCESTRAL SPECIES	102							ENSGT00940000156736 #8	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00390000008738.s #17	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000160120 #30	ENSGT00390000015682	ENSGT00950000182937.A.a	ENSGT00500000044923	ENSGT00940000158274	ENSGT01000000218120	ENSGT00390000014056	ENSGT00940000158057	ENSGT00940000159008	ENSGT00730000111333	ENSGT00390000008566	ENSGT00940000156026
Blue-lipped sea krait	MODERN SPECIES	2857																NSD2 (ENSLLTG00000016916) #22	NELFA (ENSLLTG00000016912) #23
Acanthophiinae	ANCESTRAL SPECIES	93							ENSGT00940000156736 #8	ENSGT00940000157061.a.j #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00390000008738.s #17	ENSGT00900000142191	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000160120 #30	ENSGT00390000015682	ENSGT00950000182937.A.a	ENSGT00500000044923	ENSGT00940000158274	ENSGT01000000218120	ENSGT00390000014056	ENSGT00940000158057	ENSGT00940000159008	ENSGT00730000111333	ENSGT00390000008566	ENSGT00940000156026
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	330															ENSNSUG00000019843 ##21	ENSNSUG00000019842 #22	ENSNSUG00000019841 #22	NELFA (ENSNSUG00000019840) #23	C4orf48 (ENSNSUG00000019839) #24	NAT8L (ENSNSUG00000019838) #25	MXD4 (ENSNSUG00000019837) #30	COG3 (ENSNSUG00000019836)	CHUK (ENSNSUG00000019778)	MTG1 (ENSNSUG00000019771)	PAOX (ENSNSUG00000019768)	ENSNSUG00000019766	CXCL12 (ENSNSUG00000019764)	ERCC6 (ENSNSUG00000019730)
Mainland tiger snake	MODERN SPECIES	330														ENSNSUG00000019843 ##21	ENSNSUG00000019842 #22	ENSNSUG00000019841 #22	NELFA (ENSNSUG00000019840) #23	C4orf48 (ENSNSUG00000019839) #24	NAT8L (ENSNSUG00000019838) #25	MXD4 (ENSNSUG00000019837) #30	COG3 (ENSNSUG00000019836)	CHUK (ENSNSUG00000019778)	MTG1 (ENSNSUG00000019771)	PAOX (ENSNSUG00000019768)	ENSNSUG00000019766	CXCL12 (ENSNSUG00000019764)	ERCC6 (ENSNSUG00000019730)
Eastern brown snake	MODERN SPECIES	138								CTBP1 (ENSPTXG00000010963) #11	MAEA (ENSPTXG00000010964) #13	ENSPTXG00000010965	NKX1-1 (ENSPTXG00000010966) #15	SLBP (ENSPTXG00000010967) #17	ENSPTXG00000010968	FGFR3 (ENSPTXG00000011013) #20	ENSPTXG00000017891 ##21	NSD2 (ENSPTXG00000017893) #22	NELFA (ENSPTXG00000017922) #23	C4orf48 (ENSPTXG00000017925) #24	NAT8L (ENSPTXG00000017926) #25	MXD4 (ENSPTXG00000017927) #30	COG3 (ENSPTXG00000017932)	CHUK (ENSPTXG00000017961)	MTG1 (ENSPTXG00000017965)	PAOX (ENSPTXG00000017982)	ENSPTXG00000017994	CXCL12 (ENSPTXG00000017995)	ERCC6 (ENSPTXG00000017998)	ENSPTXG00000018005	VSTM4 (ENSPTXG00000018008)	ENSPTXG00000018010	LRRC18 (ENSPTXG00000018012)
Lizard	MODERN SPECIES	911															ENSACAG00000008011 ##21	NSD2 (ENSACAG00000007905) #22	NELFA (ENSACAG00000007827) #23	C4orf48 (ENSACAG00000024164) #24	NAT8L (ENSACAG00000007821) #25	MXD4 (ENSACAG00000042014) #30	CFAP99 (ENSACAG00000028544) #33	ENSACAG00000034750	ENSACAG00000007774	ENSACAG00000007735	ENSACAG00000007733	ENSACAG00000007731	ENSACAG00000011288	ENSACAG00000011319	MAPK8 (ENSACAG00000011361)	ENSACAG00000036730	LRRC18 (ENSACAG00000011623)
Anura	ANCESTRAL SPECIES	2	ENSGT00940000161151	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00390000005342 #23	ENSGT00390000013043 #24	ENSGT00950000182932.B #25	ENSGT00940000159015 #28	ENSGT00390000011904 #29	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #34	ENSGT00390000000973.a.b #35	ENSGT00510000046908.a.b #36	ENSGT00390000002216 #37	ENSGT00940000158581	ENSGT00830000128422	ENSGT00940000166449	ENSGT00390000017459
Frog	MODERN SPECIES		ENSXETG00000042708	RNF212 (ENSXETG00000041996)	gp25l (ENSXETG00000032430) #9	spon2 (ENSXETG00000021044) #10	ctbp1 (ENSXETG00000021047) #11	maea (ENSXETG00000010676) #13	ENSXETG00000043260	uvssa (ENSXETG00000010677)	nkx1-1 (ENSXETG00000003881) #15	fam53a (ENSXETG00000003878) #16	slbp (ENSXETG00000003876) #17	tmem129 (ENSXETG00000003875) #18	tacc3 (ENSXETG00000003874) #19	fgfr3 (ENSXETG00000002396) #20	letm1 (ENSXETG00000032769) ##21	nsd2 (ENSXETG00000026376) #22	nelfa (ENSXETG00000002392) #23	c4orf48 (ENSXETG00000046848) #24	XB5729271 [provisional] (ENSXETG00000026378)	C4orf48 (ENSXETG00000046317) #24	poln (ENSXETG00000002388) #28	ENSXETG00000047057	nat8l (ENSXETG00000002389) #25	ENSXETG00000044442 #29	mxd4 (ENSXETG00000047414) #30	ENSXETG00000047339	ENSXETG00000047512	zfyve28 (ENSXETG00000020484) #31	ENSXETG00000044048	cfap99 (ENSXETG00000037813) #33	rnf4 (ENSXETG00000025752) #34
Leishan spiny toad	MODERN SPECIES		SPON2 (ENSLLEG00000003729) #10	CTBP1 (ENSLLEG00000003680) #11	MAEA (ENSLLEG00000003566) #13	ENSLLEG00000003532	ENSLLEG00000003528	ENSLLEG00000003505	NKX1-1 (ENSLLEG00000003496) #15	ENSLLEG00000003490	FAM53A (ENSLLEG00000003474) #16	ENSLLEG00000003454 #17	TMEM129 (ENSLLEG00000003431) #18	TACC3 (ENSLLEG00000003394) #19	FGFR3 (ENSLLEG00000003130) #20	ENSLLEG00000003019 ##21	ENSLLEG00000002999	NSD2 (ENSLLEG00000002834) #22	NELFA (ENSLLEG00000002756) #23	ENSLLEG00000002737 #24	C4orf48 (ENSLLEG00000002725) #24	NAT8L (ENSLLEG00000002715) #25	POLN (ENSLLEG00000002648) #28	HAUS3 (ENSLLEG00000002622) #29	ENSLLEG00000002583	ENSLLEG00000002562	ZFYVE28 (ENSLLEG00000002472) #31	CFAP99 (ENSLLEG00000002429) #33	ENSLLEG00000002418	RNF4 (ENSLLEG00000002390) #34	FAM193A (ENSLLEG00000002264) #35	ENSLLEG00000002235	ENSLLEG00000002227
Coelacanth	MODERN SPECIES	1304																NSD2 (ENSLACG00000010693) #22	ENSLACG00000022388	ino80b (ENSLACG00000009408)	ENSLACG00000008456	C4orf48 (ENSLACG00000008071) #24	ENSLACG00000005462	NAT8L (ENSLACG00000004611) #25	ENSLACG00000004184
Actinopterygii	ANCESTRAL SPECIES	64	ENSGT00940000156736 #8	ENSGT00740000115581.f	ENSGT00940000160999 #9	ENSGT00940000159900 #10	ENSGT00940000157061.a #11	ENSGT00940000153203.B #13	ENSGT00940000164256	ENSGT00940000162861 #15	ENSGT00530000063371.A #16	ENSGT00390000009871	ENSGT00390000008738 #17	ENSGT00390000013284 #18	ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.b ##21	ENSGT00940000157429 #22	ENSGT00730000111999	ENSGT00390000010318 #34	ENSGT00500000045231 #33	ENSGT00940000157217 #31	ENSGT00940000160120 #30	ENSGT00950000182810.B.b	ENSGT00390000011904 #29	ENSGT00940000159015 #28	ENSGT00950000182932.B.b #25	ENSGT00390000013043 #24	ENSGT00390000005342 #23
Neopterygii	ANCESTRAL SPECIES	369													ENSGT00940000158858 #19	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429 #22	ENSGT00730000111999	ENSGT00390000010318 #34	ENSGT00500000045231 #33	ENSGT00940000157217 #31
Osteoglossocephalai	ANCESTRAL SPECIES	1182															ENSGT00940000159880 #20	ENSGT00940000157429 #22
Osteoglossiformes	ANCESTRAL SPECIES	453														ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429 #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718
P. kingsleyae	MODERN SPECIES	132	SMU1 (ENSPKIG00000013499)	dnaja1 (ENSPKIG00000013569)	aptx (ENSPKIG00000013601)	ENSPKIG00000013626	TBC1D2 (ENSPKIG00000013647)	SLC44A1 (ENSPKIG00000013688)	abca1a (ENSPKIG00000013773)	ENSPKIG00000013853	ENSPKIG00000013875	stra6l (ENSPKIG00000013901)	exoc1l (ENSPKIG00000013937)	ENSPKIG00000013958	rpia (ENSPKIG00000013993)	fgfr3 (ENSPKIG00000014030) #20	letm1 (ENSPKIG00000014103) ##21	nsd2 (ENSPKIG00000014170) #22	ENSPKIG00000014222	jade1 (ENSPKIG00000014272)	asmt2 (ENSPKIG00000014331)	pgrmc2 (ENSPKIG00000014348)	ENSPKIG00000014360	plk4 (ENSPKIG00000014404)	HSPA4L (ENSPKIG00000014472)	ENSPKIG00000014577 #16
Asian bonytongue	MODERN SPECIES	13	ENSSFOG00015029777	ENSSFOG00015026996	ENSSFOG00015031902	ENSSFOG00015025379	ENSSFOG00015004927	eif4a3 (ENSSFOG00015004896)	ENSSFOG00015004849	sipa1l1 (ENSSFOG00015004786)	ENSSFOG00015032639	ENSSFOG00015004715	fads2 (ENSSFOG00015004678)	ENSSFOG00015004664	ENSSFOG00015004652	fgfr3 (ENSSFOG00015004525) #20	letm1 (ENSSFOG00015004498) ##21	nsd2 (ENSSFOG00015004451) #22	asmt2 (ENSSFOG00015004432)	pgrmc2 (ENSSFOG00015004413)	plk4 (ENSSFOG00015004394)	ENSSFOG00015028958	ENSSFOG00015004338	mrpl35 (ENSSFOG00015032011)	chmp3 (ENSSFOG00015033001)	nansa (ENSSFOG00015004189)	clta (ENSSFOG00015004164)	cplx2l (ENSSFOG00015004105)	xpa (ENSSFOG00015004069)	LEPROTL1 (ENSSFOG00015004036)	ENSSFOG00015004021	GSTP1 (ENSSFOG00015003969)	prph2lb (ENSSFOG00015003939)
Clupeocephala	ANCESTRAL SPECIES	196	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00940000168737	ENSGT00940000165600	ENSGT00390000003692	ENSGT00940000162255	ENSGT00940000166929	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429 #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718
Euteleosteomorpha	DUPLICATION
Euteleosteomorpha	DUPLICATION
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000157429.c.a #22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000157429.c.a #22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000157429.c.a #22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000157429.c.a #22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000157429.c.a #22
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00940000157429.c.a #22
Ovalentaria_B	ANCESTRAL SPECIES																	ENSGT00940000157429.c.a #22
Pomacentridae	ANCESTRAL SPECIES																	ENSGT00940000157429.c.a #22
Pomacentridae_A	ANCESTRAL SPECIES																	ENSGT00940000157429.c.a #22
Amphiprion	ANCESTRAL SPECIES																	ENSGT00940000157429.c.a #22
Clown anemonefish	MODERN SPECIES	2646															ENSAOCG00000023809	ENSAOCG00000023799 #22
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000157429.c.a #22
Salmoninae	ANCESTRAL SPECIES	211	ENSGT00940000157626	ENSGT00990000206238.b	ENSGT01030000234518.A.a.a	ENSGT00940000161476.q	ENSGT00940000154361.B.i.b	ENSGT00940000158524.o	ENSGT00970000197325	ENSGT00390000013178	ENSGT00940000160491.d.a.e.a	ENSGT00940000157346.h	ENSGT00940000158121	ENSGT00390000004352.s.a	ENSGT00940000166929.b	ENSGT00940000159880.d #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.c.a #22
Salmoninae_a	ANCESTRAL SPECIES	62	ENSGT00990000206238.b	ENSGT01030000234518.A.a.a	ENSGT00940000161476.q	ENSGT00940000154361.B.i.b	ENSGT00940000158524.o	ENSGT00390000013178	ENSGT00940000160491.d.a.e.a	ENSGT00940000157346.h	ENSGT00940000158121	ENSGT00390000004352.s.a	ENSGT00390000004352.t	ENSGT00390000003692	ENSGT00940000166929.b	ENSGT00940000159880.d #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.c.a #22
Oncorhynchus	ANCESTRAL SPECIES	35	ENSGT00990000206238.b	ENSGT01030000234518.A.a.a	ENSGT00940000161476.q	ENSGT00940000154361.B.i.b	ENSGT00940000158524.o	ENSGT00390000013178	ENSGT00940000160491.d.a.e.a	ENSGT00940000157346.h	ENSGT00940000158121	ENSGT00390000004352.s.a	ENSGT00390000004352.t	ENSGT00390000003692	ENSGT00940000166929.b	ENSGT00940000159880.d #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.c.a #22	ENSGT00940000158247.d
Oncorhynchus_a	ANCESTRAL SPECIES	102	ENSGT00940000157626	ENSGT00990000206238.b	ENSGT01030000234518.A.a.a	ENSGT00940000161476.q	ENSGT00940000154361.B.i.b	ENSGT00940000158524.o	ENSGT00390000013178	ENSGT00940000160491.d.a.e.a	ENSGT00940000157346.h	ENSGT00940000158121	ENSGT00390000004352.s.a	ENSGT00390000003692	ENSGT00940000166929.b	ENSGT00940000159880.d #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.c.a #22	ENSGT00940000158247.d	ENSGT00940000166228.a.b
Coho salmon	MODERN SPECIES	5	emx1 (ENSOKIG00005030905)	noto (ENSOKIG00005030895)	ENSOKIG00005030834	ap5s1 (ENSOKIG00005030824)	gfra4a (ENSOKIG00005030770)	ENSOKIG00005030744	ATRN (ENSOKIG00005030243)	EIF2AK3 (ENSOKIG00005028940)	rpia (ENSOKIG00005028831)	dnaaf9 (ENSOKIG00005028697)	foxi2 (ENSOKIG00005028613)	fgfr3 (ENSOKIG00005028463) #20	ENSOKIG00005028439	letm1 (ENSOKIG00005027991) ##21	ENSOKIG00005027961	nsd2 (ENSOKIG00005027740) #22	JADE1 (ENSOKIG00005027706)	asmt2 (ENSOKIG00005027674)	PGRMC2 (ENSOKIG00005027637)
Chinook salmon	MODERN SPECIES	22	IRS2 (ENSOTSG00005013565)	ENSOTSG00005013562	gabra6a (ENSOTSG00005013559)	nudcd2 (ENSOTSG00005013558)	ccng1 (ENSOTSG00005013556)	septin8b (ENSOTSG00005013555)	gdf9 (ENSOTSG00005013554)	uqcrq (ENSOTSG00005013553)	hspa4b (ENSOTSG00005001398)	gnpda1 (ENSOTSG00005001288)	NDFIP1 (ENSOTSG00005001050)	ENSOTSG00005001040	nr3c1 (ENSOTSG00005000998)	kctd16a (ENSOTSG00005000993)	letm1 (ENSOTSG00005000653) ##21	nsd2 (ENSOTSG00005000633) #22	jade1 (ENSOTSG00005000552)	ENSOTSG00005000545	ENSOTSG00005000541	abhd13 (ENSOTSG00005000537)	NALF1 (ENSOTSG00005000532)	ENSOTSG00005000528	pdzk1 (ENSOTSG00005000523)	GPR89B (ENSOTSG00005000500)	zgc:113337 (ENSOTSG00005000493)	ENSOTSG00005000487	ENSOTSG00005000479	nr1i2 (ENSOTSG00005000476)	ENSOTSG00005000474	ENSOTSG00005000475	gja8a (ENSOTSG00005000472)
Rainbow trout	MODERN SPECIES	17	ENSOMYG00000068837	ENSOMYG00000024162	ENSOMYG00000061808	ENSOMYG00000023975	ENSOMYG00000061409	ENSOMYG00000048028	rpia (ENSOMYG00000023915)	dnaaf9 (ENSOMYG00000074713)	foxi2 (ENSOMYG00000064093)	fgfr3 (ENSOMYG00000064424) #20	ENSOMYG00000049397	ENSOMYG00000024144	ENSOMYG00000068644	letm1 (ENSOMYG00000037375) ##21	ENSOMYG00000060232	nsd2 (ENSOMYG00000062514) #22	ENSOMYG00000037385	ENSOMYG00000023763	ENSOMYG00000037397	ENSOMYG00000075374	ENSOMYG00000064411	pgmrc2 (ENSOMYG00000037409)
Salmo	ANCESTRAL SPECIES	104	ENSGT00940000158157.e.a.a	ENSGT00940000157626	ENSGT00990000206238.b	ENSGT01030000234518.A.a.a	ENSGT00940000161476.q	ENSGT00940000154361.B.i.b	ENSGT00940000158524.o	ENSGT00390000013178	ENSGT00940000157346.h	ENSGT00940000158121	ENSGT00390000004352.t	ENSGT00390000003692	ENSGT00940000166929.b	ENSGT00940000159880.d #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.c.a #22
River trout	MODERN SPECIES	17	ap5s1 (ENSSTUG00000014551)	ENSSTUG00000014545	ENSSTUG00000014540	gfra4a (ENSSTUG00000014525)	ENSSTUG00000014523	ATRN (ENSSTUG00000014160)	dnaaf9 (ENSSTUG00000014095)	rpia (ENSSTUG00000014050)	ENSSTUG00000014043	EIF2AK3 (ENSSTUG00000012905)	foxi2 (ENSSTUG00000012835)	fgfr3 (ENSSTUG00000011565) #20	ENSSTUG00000011525	ENSSTUG00000011523	letm1 (ENSSTUG00000011094) ##21	nsd2 (ENSSTUG00000010963) #22	asmt2 (ENSSTUG00000010952)
Atlantic salmon	MODERN SPECIES	28	ENSSSAG00000005251	ap5s1 (ENSSSAG00000005242)	ENSSSAG00000104685	gfra4a (ENSSSAG00000066392)	ENSSSAG00000122165	ENSSSAG00000118077	ENSSSAG00000044650	ENSSSAG00000089691	rpia (ENSSSAG00000091274)	ENSSSAG00000042228	foxi2 (ENSSSAG00000118989)	fgfr3 (ENSSSAG00000103995) #20	letm1 (ENSSSAG00000093538) ##21	ENSSSAG00000086553	ENSSSAG00000057776	nsd2 (ENSSSAG00000004746) #22	ENSSSAG00000097990	ENSSSAG00000085767	ENSSSAG00000112154	ENSSSAG00000102326	ENSSSAG00000100680	ENSSSAG00000065231	ENSSSAG00000065247	ENSSSAG00000084738	ENSSSAG00000087535	ENSSSAG00000065289	med12 (ENSSSAG00000065431)	ENSSSAG00000097697	glra4a (ENSSSAG00000071219)	ENSSSAG00000071185	ENSSSAG00000113096
Huchen	DUPLICATION
Huchen	MODERN SPECIES	5993																ENSHHUG00000007126 #22	ENSHHUG00000007142
Huchen	DUPLICATION
Huchen	MODERN SPECIES	5999																ENSHHUG00000007233 #22
Huchen	MODERN SPECIES	9089																ENSHHUG00000004302 #22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000157429.c.b #22
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000157429.c.b #22
Salmoninae	ANCESTRAL SPECIES	2084															ENSGT00940000159880.c #20	ENSGT00940000157429.c.b #22
Salmoninae_a	ANCESTRAL SPECIES	957															ENSGT00940000159880.c #20	ENSGT00940000157429.c.b #22
Salmo	ANCESTRAL SPECIES	8															ENSGT00940000159880.c #20	ENSGT00940000157429.c.b #22	ENSGT00940000158247.c	ENSGT00940000159744.g	ENSGT00940000166929.a	ENSGT00940000162255	ENSGT00940000154894.b	ENSGT00390000004352.s.b	ENSGT00940000157346.g.a.b.b.a	ENSGT00940000160491.d.a.e.b	ENSGT00940000158524.p	ENSGT00940000154361.B.i.a	ENSGT00940000161476.r	ENSGT00940000158783.a.a	ENSGT00990000206238.a	ENSGT00940000158157.e.a.b	ENSGT00940000165724
River trout	MODERN SPECIES	193														fgfr3 (ENSSTUG00000023361) #20	ENSSTUG00000038249	nsd2 (ENSSTUG00000038261) #22	jade1 (ENSSTUG00000038412)	pgrmc2 (ENSSTUG00000038428)	foxi2 (ENSSTUG00000038440)
Atlantic salmon	MODERN SPECIES		ENSSSAG00000093490	EXD2 (ENSSSAG00000106653)	ENSSSAG00000102505	ENSSSAG00000084748	ENSSSAG00000115259	GALNT16 (ENSSSAG00000105031)	ENSSSAG00000116341	ENSSSAG00000083603	ENSSSAG00000063299	ENSSSAG00000000059	ENSSSAG00000105589	ENSSSAG00000107445	ENSSSAG00000121530	ENSSSAG00000062885 #20	ENSSSAG00000082060	ENSSSAG00000000040 #22	ENSSSAG00000000048	ENSSSAG00000086702	ENSSSAG00000119872	ENSSSAG00000000041	cfd (ENSSSAG00000001017)	ENSSSAG00000114841	ENSSSAG00000063772	rpia (ENSSSAG00000044034)	ENSSSAG00000096526	ENSSSAG00000110898	ENSSSAG00000000044	ENSSSAG00000082077	rpia (ENSSSAG00000090551)	ATRN (ENSSSAG00000110187)	gfra4a (ENSSSAG00000105454)
Oncorhynchus	ANCESTRAL SPECIES	213																ENSGT00940000157429.c.b #22	ENSGT00940000158247.c	ENSGT00940000159744.g	ENSGT00940000166929.a	ENSGT00940000162255	ENSGT00940000154894.b
Rainbow trout	MODERN SPECIES	10															ENSOMYG00000056913	ENSOMYG00000007230 #22	ENSOMYG00000052376	ENSOMYG00000076335	ENSOMYG00000007146	ENSOMYG00000007940	ENSOMYG00000007852	ENSOMYG00000056269	ENSOMYG00000026479	ENSOMYG00000073655	ENSOMYG00000007748	ENSOMYG00000006964	emx1 (ENSOMYG00000030872)	noto (ENSOMYG00000007263)	ENSOMYG00000007320	ENSOMYG00000053135	ENSOMYG00000027770
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00940000157429.c.b #22
Coho salmon	MODERN SPECIES	473																NSD2 (ENSOKIG00005042566) #22
Chinook salmon	MODERN SPECIES	15	tbx20 (ENSOTSG00005006511)	prdm1a (ENSOTSG00005006510)	atg5 (ENSOTSG00005006509)	dctn3 (ENSOTSG00005006501)	nt5c3a (ENSOTSG00005006498)	prdm1a (ENSOTSG00005006496)	atg5 (ENSOTSG00005006495)	dctn3 (ENSOTSG00005006494)	nt5c3a (ENSOTSG00005004893)	ENSOTSG00005004887	ENSOTSG00005004886	zgc:153012 (ENSOTSG00005004884)	ENSOTSG00005004882	ENSOTSG00005004881	eif4e2rs1 (ENSOTSG00005004880)	nsd2 (ENSOTSG00005004875) #22	ENSOTSG00005004872	ENSOTSG00005004868	foxi2 (ENSOTSG00005004866)	bmper (ENSOTSG00005004745)	eaf1 (ENSOTSG00005004735)	sh3bp5b (ENSOTSG00005004590)	capn7 (ENSOTSG00005003612)	ENSOTSG00005003608	ENSOTSG00005003607	bms1 (ENSOTSG00005003185)	mxtx2 (ENSOTSG00005003175)	herpud2 (ENSOTSG00005003168)	ENSOTSG00005003162	sri (ENSOTSG00005003029)	snrnp48 (ENSOTSG00005002878)
Euteleosteomorpha	ANCESTRAL SPECIES	19	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00940000168737	ENSGT00940000165600	ENSGT00390000003692	ENSGT00940000162255	ENSGT00940000166929	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718
Protacanthopterygii	ANCESTRAL SPECIES	68	ENSGT00940000158783.a.a	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00390000003692	ENSGT00940000162255	ENSGT00940000166929	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b
Northern pike	MODERN SPECIES	14	ENSELUG00000024502	ENSELUG00000029667	gfra4a (ENSELUG00000024589)	ATRN (ENSELUG00000024472)	EIF2AK3 (ENSELUG00000024324)	rpia (ENSELUG00000024304)	ENSELUG00000030932	slc4a11 (ENSELUG00000024292)	ENSELUG00000024264	dnaaf9 (ENSELUG00000001538)	cfd (ENSELUG00000024158)	foxi2 (ENSELUG00000024124)	ENSELUG00000028405	fgfr3 (ENSELUG00000026381) #20	letm1 (ENSELUG00000024036) ##21	nsd2 (ENSELUG00000023999) #22	jade1 (ENSELUG00000023986)	asmt2 (ENSELUG00000001000)	pgrmc2 (ENSELUG00000023793)	ENSELUG00000023774	ENSELUG00000023708	ahsa1b (ENSELUG00000023703)	manba (ENSELUG00000023651)	ENSELUG00000023641	ENSELUG00000023590	CPXM1 (ENSELUG00000023583)	wdr32 (ENSELUG00000023447)	marc1 (ENSELUG00000023379)	ENSELUG00000023278	ezra (ENSELUG00000023266)	nenf (ENSELUG00000022980)
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000157429.d #22
Huchen	MODERN SPECIES	8652																ENSHHUG00000010766 #22
Acanthomorphata	ANCESTRAL SPECIES	19	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000168737	ENSGT00940000165600	ENSGT00940000166929	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000163336	ENSGT00990000210253	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01050000245132
Euacanthomorphacea	ANCESTRAL SPECIES	11	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00940000168737	ENSGT00940000165600	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000163336	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01050000245132	ENSGT00390000012669
Percomorphaceae	ANCESTRAL SPECIES	13	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00940000168737	ENSGT00390000003692	ENSGT00940000165600	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478
Tiger tail seahorse	MODERN SPECIES	43														fgfr3 (ENSHCOG00000001033) #20	letm1 (ENSHCOG00000001017) ##21	nsd2 (ENSHCOG00000001008) #22	jade1 (ENSHCOG00000000999)	asmt2 (ENSHCOG00000000989)	ENSHCOG00000000977	ENSHCOG00000000041	ENSHCOG00000000961	ENSHCOG00000000956	si:dkey-177p2.6 (ENSHCOG00000000950)	cdca4 (ENSHCOG00000000948)	ahsa1b (ENSHCOG00000000941)	ENSHCOG00000000923	ENSHCOG00000000918	pgrmc2 (ENSHCOG00000000911)	vps29 (ENSHCOG00000000908)	eif5 (ENSHCOG00000000904)	ENSHCOG00000000039
Percomorphaceae_B	ANCESTRAL SPECIES	11	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00940000168737	ENSGT00390000003692	ENSGT00940000165600	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478
Ovalentaria	ANCESTRAL SPECIES	10	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00940000168737	ENSGT00390000003692	ENSGT00940000165600	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478
Ovalentaria_B	ANCESTRAL SPECIES	24	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT00940000164834.a	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01050000245132	ENSGT00390000012669
Pomacentridae	ANCESTRAL SPECIES	22	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000165596	ENSGT00940000165600	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT00940000164834.a	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT00390000012669	ENSGT00390000016478
Pomacentridae_A	ANCESTRAL SPECIES	31	ENSGT00390000013178	ENSGT00940000165336.a.a.a.h	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT00940000164834.a	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT00390000012669	ENSGT00390000016478
Amphiprion	ANCESTRAL SPECIES	27	ENSGT00390000013178	ENSGT00940000165336.a.a.a.h.b	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT00390000012669	ENSGT00390000016478	ENSGT00940000154862.x.b
Orange clownfish	MODERN SPECIES	9	ap5s1 (ENSAPEG00000005155)	selenou1b (ENSAPEG00000005140)	gfra4a (ENSAPEG00000005102)	ATRN (ENSAPEG00000005019)	EIF2AK3 (ENSAPEG00000004914)	rpia (ENSAPEG00000004888)	slc4a11 (ENSAPEG00000004828)	ENSAPEG00000004812	dnaaf9 (ENSAPEG00000004711)	ENSAPEG00000004685	ENSAPEG00000004659	foxi2 (ENSAPEG00000004629)	ENSAPEG00000004613	fgfr3 (ENSAPEG00000004513) #20	letm1 (ENSAPEG00000004405) ##21	nsd2 (ENSAPEG00000004338) #22	jade1 (ENSAPEG00000004283)	asmt2 (ENSAPEG00000004192)	pgrmc2 (ENSAPEG00000004176)	ENSAPEG00000004126	ENSAPEG00000004088	ahsa1b (ENSAPEG00000004042)	cdca4 (ENSAPEG00000004021)	si:dkey-177p2.6 (ENSAPEG00000004001)	ENSAPEG00000003968	ENSAPEG00000003897	ENSAPEG00000003871	exoc3l4 (ENSAPEG00000003835)	TNFAIP2 (ENSAPEG00000003816)	vps29 (ENSAPEG00000003774)	eif5 (ENSAPEG00000003714)
Clown anemonefish	MODERN SPECIES	1892								ENSAOCG00000004054	dnaaf9 (ENSAOCG00000004210)	ENSAOCG00000004245	ENSAOCG00000004253	foxi2 (ENSAOCG00000004259)	ENSAOCG00000004266	fgfr3 (ENSAOCG00000004302) #20	letm1 (ENSAOCG00000004336) ##21	nsd2 (ENSAOCG00000002621) #22
Spiny chromis	MODERN SPECIES	486														ENSAPOG00000019817	letm1 (ENSAPOG00000019848) ##21	nsd2 (ENSAPOG00000019950) #22	jade1 (ENSAPOG00000019992)	asmt2 (ENSAPOG00000020041)	pgrmc2 (ENSAPOG00000020059)	ENSAPOG00000020101	ENSAPOG00000020109	ahsa1b (ENSAPOG00000020144)	cdca4 (ENSAPOG00000020158)	si:dkey-177p2.6 (ENSAPOG00000020178)	ENSAPOG00000020214	ENSAPOG00000020247	exoc3l4 (ENSAPOG00000020267)	ENSAPOG00000020279
Bicolor damselfish	DUPLICATION
Bicolor damselfish	MODERN SPECIES	355																nsd2 (ENSSPAG00000017976) #22	jade1 (ENSSPAG00000017957)	asmt2 (ENSSPAG00000017896)	pgrmc2 (ENSSPAG00000017885)	ENSSPAG00000017772	ENSSPAG00000017738	cdca4 (ENSSPAG00000017726)	si:dkey-177p2.6 (ENSSPAG00000017708)	ahsa1b (ENSSPAG00000017685)	ENSSPAG00000017663	ENSSPAG00000017641	exoc3l4 (ENSSPAG00000017613)	ENSSPAG00000017576	vps29 (ENSSPAG00000017555)	eif5 (ENSSPAG00000017515)	mark3a (ENSSPAG00000017350)
Bicolor damselfish	MODERN SPECIES	2164															letm1 (ENSSPAG00000008198) ##21	nsd2 (ENSSPAG00000008053) #22
Cichlidae	ANCESTRAL SPECIES	37	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000160366	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01050000245132	ENSGT00390000012669
Midas cichlid	MODERN SPECIES	1272				gfra4a (ENSACIG00000023982)	ATRN (ENSACIG00000023979)	EIF2AK3 (ENSACIG00000023948)	rpia (ENSACIG00000023941)	slc4a11 (ENSACIG00000023939)	ENSACIG00000023936	dnaaf9 (ENSACIG00000023931)	ENSACIG00000023928	foxi2 (ENSACIG00000023925)	ENSACIG00000023923	fgfr3 (ENSACIG00000023919) #20	letm1 (ENSACIG00000023916) ##21	nsd2 (ENSACIG00000023914) #22	jade1 (ENSACIG00000023910)	asmt2 (ENSACIG00000023903)	pgrmc2 (ENSACIG00000023899)	ENSACIG00000023890	ENSACIG00000023884	ahsa1b (ENSACIG00000023880)	cdca4 (ENSACIG00000023875)	si:dkey-177p2.6 (ENSACIG00000023872)	ENSACIG00000023870	ENSACIG00000023856	ENSACIG00000023851	ENSACIG00000023845	vps29 (ENSACIG00000023840)	eif5 (ENSACIG00000023833)	mark3a (ENSACIG00000023826)
Pseudocrenilabrinae	ANCESTRAL SPECIES	8	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000160366	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a.i.a.a.a	ENSGT01050000245132	ENSGT00390000012669
Nile tilapia	MODERN SPECIES	10	ENSONIG00000028241	ENSONIG00000040004	gfra4a (ENSONIG00000041946)	ATRN (ENSONIG00000012302)	EIF2AK3 (ENSONIG00000012314)	rpia (ENSONIG00000012320)	slc4a11 (ENSONIG00000012322)	ENSONIG00000012325	dnaaf9 (ENSONIG00000012327)	ENSONIG00000012342	ENSONIG00000029006	foxi2 (ENSONIG00000012345)	ENSONIG00000033578	fgfr3 (ENSONIG00000012350) #20	letm1 (ENSONIG00000012371) ##21	nsd2 (ENSONIG00000012377) #22	jade1 (ENSONIG00000012379)	asmt2 (ENSONIG00000036240)	pgrmc2 (ENSONIG00000033876)	ENSONIG00000012386	ENSONIG00000030302	ahsa1b (ENSONIG00000012392)	cdca4 (ENSONIG00000021035)	si:dkey-177p2.6 (ENSONIG00000012393)	ENSONIG00000040212	ENSONIG00000034348	exoc3l4 (ENSONIG00000012398)	ENSONIG00000012400	ENSONIG00000012403	ENSONIG00000042609	vps29 (ENSONIG00000012406)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	6	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158570.o	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000160366	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.a.c.a.j.a.a	ENSGT01030000234613.b.a.a.c.a.j.a.b	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a.i.a.a.a
Lyretail cichlid	MODERN SPECIES	299	ap5s1 (ENSNBRG00000024096)	ENSNBRG00000024090	gfra4a (ENSNBRG00000024085)	ATRN (ENSNBRG00000024070)	EIF2AK3 (ENSNBRG00000023980)	rpia (ENSNBRG00000023943)	slc4a11 (ENSNBRG00000023937)	ENSNBRG00000023934	ENSNBRG00000023933	ENSNBRG00000023929	ENSNBRG00000023925	foxi2 (ENSNBRG00000023917)	ENSNBRG00000023914	fgfr3 (ENSNBRG00000023909) #20	letm1 (ENSNBRG00000023899) ##21	nsd2 (ENSNBRG00000023888) #22	ENSNBRG00000023877	asmt2 (ENSNBRG00000023867)	pgrmc2 (ENSNBRG00000023859)	ENSNBRG00000023857	ENSNBRG00000023846	ENSNBRG00000023837	ahsa1b (ENSNBRG00000023827)	cdca4 (ENSNBRG00000023822)	si:dkey-177p2.6 (ENSNBRG00000023817)	ENSNBRG00000023808	ENSNBRG00000023783	ENSNBRG00000023779	ENSNBRG00000023772	exoc3l4 (ENSNBRG00000023763)	ENSNBRG00000023757
Haplochromini	ANCESTRAL SPECIES	42	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158570.o	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000160366	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.a.c.a.j.a.a	ENSGT01030000234613.b.a.a.c.a.j.a.b	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a.i.a.a.a
Burton s mouthbrooder	MODERN SPECIES	378	CDC25B (ENSHBUG00000010407)	gfra4a (ENSHBUG00000010396)	ATRN (ENSHBUG00000010380)	EIF2AK3 (ENSHBUG00000010330)	rpia (ENSHBUG00000000267)	slc4a11 (ENSHBUG00000010198)	ENSHBUG00000010107	ENSHBUG00000010095	ENSHBUG00000010073	ENSHBUG00000010053	ENSHBUG00000000869	foxi2 (ENSHBUG00000010027)	ENSHBUG00000010022	fgfr3 (ENSHBUG00000010008) #20	letm1 (ENSHBUG00000009958) ##21	nsd2 (ENSHBUG00000009944) #22	ENSHBUG00000009846	asmt2 (ENSHBUG00000009769)	pgrmc2 (ENSHBUG00000009744)	ENSHBUG00000009730	ENSHBUG00000009701	ahsa1b (ENSHBUG00000009687)	cdca4 (ENSHBUG00000009662)	si:dkey-177p2.6 (ENSHBUG00000009647)	ENSHBUG00000009644
Haplochromini_A	ANCESTRAL SPECIES	44	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT01100000263664.a.a.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158570.o	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000160366	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.a.c.a.j.a.a	ENSGT01030000234613.b.a.a.c.a.j.a.b	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a.i.a.a.a
P. nyererei	DUPLICATION
P. nyererei	MODERN SPECIES	324	ap5s1 (ENSPNYG00000017952)	gfra4a (ENSPNYG00000017873)	ATRN (ENSPNYG00000017794)	EIF2AK3 (ENSPNYG00000017747)	rpia (ENSPNYG00000017715)	slc4a11 (ENSPNYG00000017688)	ENSPNYG00000017676	ENSPNYG00000017663	ENSPNYG00000017649	ENSPNYG00000017640	foxi2 (ENSPNYG00000017605)	ENSPNYG00000017588	fgfr3 (ENSPNYG00000017549) #20	letm1 (ENSPNYG00000017522) ##21	ENSPNYG00000017497 #22	nsd2 (ENSPNYG00000017469) #22	ENSPNYG00000017455	asmt2 (ENSPNYG00000017406)	pgrmc2 (ENSPNYG00000017389)	ENSPNYG00000017357	ENSPNYG00000017346	ahsa1b (ENSPNYG00000017307)	cdca4 (ENSPNYG00000017292)	si:dkey-177p2.6 (ENSPNYG00000017283)	ENSPNYG00000017260	ENSPNYG00000017226	ENSPNYG00000017216	ENSPNYG00000017199	exoc3l4 (ENSPNYG00000017183)	vps29 (ENSPNYG00000017155)	eif5 (ENSPNYG00000017114)
P. nyererei	MODERN SPECIES	324	cdc25b (ENSPNYG00000017961)	ap5s1 (ENSPNYG00000017952)	gfra4a (ENSPNYG00000017873)	ATRN (ENSPNYG00000017794)	EIF2AK3 (ENSPNYG00000017747)	rpia (ENSPNYG00000017715)	slc4a11 (ENSPNYG00000017688)	ENSPNYG00000017676	ENSPNYG00000017663	ENSPNYG00000017649	ENSPNYG00000017640	foxi2 (ENSPNYG00000017605)	ENSPNYG00000017588	fgfr3 (ENSPNYG00000017549) #20	letm1 (ENSPNYG00000017522) ##21	ENSPNYG00000017497 #22	nsd2 (ENSPNYG00000017469) #22	ENSPNYG00000017455	asmt2 (ENSPNYG00000017406)	pgrmc2 (ENSPNYG00000017389)	ENSPNYG00000017357	ENSPNYG00000017346	ahsa1b (ENSPNYG00000017307)	cdca4 (ENSPNYG00000017292)	si:dkey-177p2.6 (ENSPNYG00000017283)	ENSPNYG00000017260	ENSPNYG00000017226	ENSPNYG00000017216	ENSPNYG00000017199	exoc3l4 (ENSPNYG00000017183)	vps29 (ENSPNYG00000017155)
Haplochromini_B	ANCESTRAL SPECIES	55	ENSGT00940000179604	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT01100000263664.a.a.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158570.o	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000163336	ENSGT00940000168728	ENSGT01030000234613.b.a.a.c.a.j.a.a	ENSGT01030000234613.b.a.a.c.a.j.a.b	ENSGT01030000234613.b.a.a.c.a.j.b	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a.i.a.a.a
Eastern happy	MODERN SPECIES	10	ENSACLG00000013029	gfra4a (ENSACLG00000013024)	ATRN (ENSACLG00000012747)	EIF2AK3 (ENSACLG00000012653)	rpia (ENSACLG00000012576)	ENSACLG00000012564	slc4a11 (ENSACLG00000012446)	ENSACLG00000012416	dnaaf9 (ENSACLG00000012348)	ENSACLG00000012317	ENSACLG00000012325	foxi2 (ENSACLG00000012312)	ENSACLG00000012299	fgfr3 (ENSACLG00000012190) #20	letm1 (ENSACLG00000012126) ##21	nsd2 (ENSACLG00000012052) #22	ENSACLG00000012040	asmt2 (ENSACLG00000012031)	pgrmc2 (ENSACLG00000012016)	ENSACLG00000011948	ENSACLG00000011929	ahsa1b (ENSACLG00000011869)	cdca4 (ENSACLG00000011837)	si:dkey-177p2.6 (ENSACLG00000011833)	ENSACLG00000011815	ENSACLG00000011799	ENSACLG00000011639	ENSACLG00000011602	ENSACLG00000011579	exoc3l4 (ENSACLG00000011561)	ENSACLG00000011547
Zebra mbuna	MODERN SPECIES	1101	ENSMZEG00005003472	gfra4a (ENSMZEG00005003463)	ATRN (ENSMZEG00005003375)	EIF2AK3 (ENSMZEG00005003312)	rpia (ENSMZEG00005003282)	ENSMZEG00005003263	slc4a11 (ENSMZEG00005003156)	ENSMZEG00005003114	dnaaf9 (ENSMZEG00005002915)	ENSMZEG00005002897	ENSMZEG00005002891	foxi2 (ENSMZEG00005002881)	ENSMZEG00005002873	fgfr3 (ENSMZEG00005002787) #20	letm1 (ENSMZEG00005002737) ##21	nsd2 (ENSMZEG00005002708) #22	ENSMZEG00005002696	asmt2 (ENSMZEG00005002616)	pgrmc2 (ENSMZEG00005002598)	ENSMZEG00005002545	ENSMZEG00005002527	ahsa1b (ENSMZEG00005002495)	cdca4 (ENSMZEG00005002473)	si:dkey-177p2.6 (ENSMZEG00005002460)	ENSMZEG00005002450	ENSMZEG00005002435	ENSMZEG00005002412	ENSMZEG00005002389	ENSMZEG00005002356	ENSMZEG00005002328	exoc3l4 (ENSMZEG00005002293)
Atherinomorphae	ANCESTRAL SPECIES	11	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00940000168737	ENSGT00940000165600	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT00390000012669	ENSGT00390000016478	ENSGT00940000154862.x.b
Oryzias	ANCESTRAL SPECIES	3	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000162161.B	ENSGT00940000164100.B	ENSGT00940000165596	ENSGT00940000154894.b	ENSGT00390000004352	ENSGT00940000158121	ENSGT00940000166929	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000163336	ENSGT00940000168728	ENSGT00390000004172	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a
Oryzias_a	ANCESTRAL SPECIES	29	ENSGT00940000176966	ENSGT00940000154656.ob.a.e	ENSGT00940000156116.A	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000162161.B	ENSGT00940000164100.B	ENSGT00940000165596	ENSGT00940000154894.b	ENSGT00390000004352	ENSGT00940000158121	ENSGT00940000166929	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000168728	ENSGT00390000004172	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT00390000012669	ENSGT00390000016478	ENSGT00940000154862.x.b
Japanese Medaka HdrR	MODERN SPECIES	14	ENSORLG00000026755	ENSORLG00000030269	ENSORLG00000027235	cfd (ENSORLG00000017983)	ENSORLG00000017986	ENSORLG00000027274	ENSORLG00000029939	slc4a11 (ENSORLG00000017987)	rpia (ENSORLG00000023480)	eif2ak3 (ENSORLG00000017993)	ENSORLG00000029298	foxi2 (ENSORLG00000017977)	ENSORLG00000030291	fgfr3 (ENSORLG00000017972) #20	letm1 (ENSORLG00000026285) ##21	nsd2 (ENSORLG00000029684) #22	jade1 (ENSORLG00000017964)	asmt2 (ENSORLG00000017961)	pgrmc2 (ENSORLG00000017957)	ENSORLG00000017954	ENSORLG00000023447	ahsa1b (ENSORLG00000017948)	cdca4 (ENSORLG00000017941)	si:dkey-177p2.6 (ENSORLG00000021887)	ENSORLG00000027786	ENSORLG00000030539	ENSORLG00000021797	ENSORLG00000024013	rsph3 (ENSORLG00000017939)	exoc3l4 (ENSORLG00000027040)	ENSORLG00000017937
Chinese medaka	MODERN SPECIES	889														fgfr3 (ENSOSIG00000005052) #20	letm1 (ENSOSIG00000004899) ##21	nsd2 (ENSOSIG00000004846) #22	jade1 (ENSOSIG00000004831)	asmt2 (ENSOSIG00000004823)	pgrmc2 (ENSOSIG00000004809)	ENSOSIG00000004806	ahsa1b (ENSOSIG00000004778)	cdca4 (ENSOSIG00000004773)
Oryzias_b	ANCESTRAL SPECIES	39	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000162161.B	ENSGT00940000164100.B	ENSGT00940000165596	ENSGT00940000154894.b	ENSGT00390000004352	ENSGT00940000158121	ENSGT00940000166929	ENSGT00940000159880 #20	ENSGT00940000164472.a.a.b.b.a.a.b.b.a.a.b.b	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000163336	ENSGT00940000168728	ENSGT00390000004172.c	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a
Indian medaka	MODERN SPECIES		rpia (ENSOMEG00000004773)	EIF2AK3 (ENSOMEG00000004741)	foxi2 (ENSOMEG00000004683)	c1d (ENSOMEG00000004672)	ENSOMEG00000004664	ENSOMEG00000004651	ENSOMEG00000004634	ENSOMEG00000004615	ENSOMEG00000000838	ENSOMEG00000004593	fgfr3 (ENSOMEG00000004574) #20	ENSOMEG00000004505	rsph3 (ENSOMEG00000004427)	ENSOMEG00000004388	letm1 (ENSOMEG00000004367) ##21	nsd2 (ENSOMEG00000004293) #22	jade1 (ENSOMEG00000004266)	asmt2 (ENSOMEG00000004237)	pgrmc2 (ENSOMEG00000004227)	ENSOMEG00000004210	ahsa1b (ENSOMEG00000004175)	cdca4 (ENSOMEG00000004162)	si:dkey-177p2.6 (ENSOMEG00000004154)	ENSOMEG00000004144	ENSOMEG00000004131	rsph3 (ENSOMEG00000004121)	exoc3l4 (ENSOMEG00000004068)	ENSOMEG00000004048	vps29 (ENSOMEG00000004024)	eif5 (ENSOMEG00000003991)	mark3a (ENSOMEG00000003926)
Cyprinodontiformes	ANCESTRAL SPECIES	21	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00940000168737	ENSGT00940000165600	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT00390000012669	ENSGT00390000016478	ENSGT00940000154862.x.b.b
Aplocheiloidei	ANCESTRAL SPECIES	171								ENSGT00940000165596	ENSGT00940000168737	ENSGT00940000165600	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a
Mangrove rivulus	MODERN SPECIES	508													ENSKMAG00000011133	fgfr3 (ENSKMAG00000011175) #20	letm1 (ENSKMAG00000011368) ##21	nsd2 (ENSKMAG00000011430) #22	jade1 (ENSKMAG00000011484)	asmt2 (ENSKMAG00000011527)	pgrmc2 (ENSKMAG00000011556)	ENSKMAG00000011589	ahsa1b (ENSKMAG00000011676)	cdca4 (ENSKMAG00000011707)	ENSKMAG00000011730	lrit3b (ENSKMAG00000011743)	jkamp (ENSKMAG00000011758)	fam241a (ENSKMAG00000011779)	GPR135 (ENSKMAG00000011784)	ENSKMAG00000011793
Turquoise killifish	MODERN SPECIES	1625	ENSNFUG00015015903	ehd4 (ENSNFUG00015015073)	G2E3 (ENSNFUG00015014986)	SLY1 (ENSNFUG00015013309)	ENSNFUG00015013270	ENSNFUG00015013267	coch (ENSNFUG00015013227)	strn3 (ENSNFUG00015012868)	ENSNFUG00015012844	ENSNFUG00015012840	HECTD1 (ENSNFUG00015012796)	MDGA2 (ENSNFUG00015012518)	tbpl2 (ENSNFUG00015012481)	TBPL2 (ENSNFUG00015012475)	letm1 (ENSNFUG00015011439) ##21	nsd2 (ENSNFUG00015011241) #22	jade1 (ENSNFUG00015011192)	ENSNFUG00015011180	asmt2 (ENSNFUG00015011105)	PGRMC2 (ENSNFUG00015011040)	LARP1B (ENSNFUG00015010949)	ahsa1b (ENSNFUG00015010902)	cdca4 (ENSNFUG00015010900)	si:dkey-177p2.6 (ENSNFUG00015010892)	ENSNFUG00015010885	ENSNFUG00015010878	ENSNFUG00015010859	PANK2 (ENSNFUG00015010816)	loxl3b (ENSNFUG00015010635)	Nfu_g_1_021778 (ENSNFUG00015010598)	ENSNFUG00015010593
Cyprinodontoidei	ANCESTRAL SPECIES	8	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00940000168737	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT00390000012669	ENSGT00390000016478	ENSGT00940000154862.x.b.b
NAME_4	ANCESTRAL SPECIES	104	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000165600	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT00390000012669	ENSGT00390000016478	ENSGT00940000154862.x.b.b
Mummichog	MODERN SPECIES	2356															letm1 (ENSFHEG00000010110) ##21	nsd2 (ENSFHEG00000010191) #22	jade1 (ENSFHEG00000010222)	asmt2 (ENSFHEG00000010232)	pgrmc2 (ENSFHEG00000010241)	LARP1B (ENSFHEG00000010264)	ENSFHEG00000010280	ahsa1b (ENSFHEG00000000236)	cdca4 (ENSFHEG00000010349)	si:dkey-177p2.6 (ENSFHEG00000010364)	ENSFHEG00000010398	ENSFHEG00000010410	exoc3l4 (ENSFHEG00000010420)	ENSFHEG00000010441	vps29 (ENSFHEG00000010482)	eif5 (ENSFHEG00000010524)	mark3a (ENSFHEG00000010724)
Sheepshead minnow	MODERN SPECIES	285				ubl7b (ENSCVAG00000007150)	cd276 (ENSCVAG00000007113)	ENSCVAG00000007104	insyn1 (ENSCVAG00000007085)	ENSCVAG00000007066	ENSCVAG00000007045	ENSCVAG00000007040	foxi2 (ENSCVAG00000007036)	ENSCVAG00000007034	fgfr3 (ENSCVAG00000006981) #20	ENSCVAG00000005268	letm1 (ENSCVAG00000005250) ##21	nsd2 (ENSCVAG00000005168) #22	jade1 (ENSCVAG00000005134)	asmt2 (ENSCVAG00000005088)	pgrmc2 (ENSCVAG00000005059)	ENSCVAG00000005046	ENSCVAG00000004976	ahsa1b (ENSCVAG00000004956)	cdca4 (ENSCVAG00000004923)	si:dkey-177p2.6 (ENSCVAG00000004911)	ENSCVAG00000004787	ENSCVAG00000004768	exoc3l4 (ENSCVAG00000004746)	ENSCVAG00000004741	ENSCVAG00000004733	ifi27.8 (ENSCVAG00000004725)	ENSCVAG00000004714
Poeciliinae	ANCESTRAL SPECIES	8	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00940000168737	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000161979.B.o.cb.d.a.a.b.a.a	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT00390000012669	ENSGT00390000016478	ENSGT00940000154862.x.b.b
Platyfish	DUPLICATION
Platyfish	MODERN SPECIES	10	ENSXMAG00000023573	EIF2AK3 (ENSXMAG00000002407)	rpia (ENSXMAG00000002395)	slc4a11 (ENSXMAG00000025385)	ENSXMAG00000024583	dnaaf9 (ENSXMAG00000007136)	ENSXMAG00000025775	ENSXMAG00000030023	ENSXMAG00000023134	foxi2 (ENSXMAG00000025063)	ENSXMAG00000004701	ENSXMAG00000021715	fgfr3 (ENSXMAG00000026115) #20	letm1 (ENSXMAG00000008107) ##21	ENSXMAG00000026440 #22	nsd2 (ENSXMAG00000008116) #22	jade1 (ENSXMAG00000008136)	asmt2 (ENSXMAG00000009925)	pgrmc2 (ENSXMAG00000024645)	ENSXMAG00000008150	ENSXMAG00000022268	ahsa1b (ENSXMAG00000022100)	cdca4 (ENSXMAG00000019446)	si:dkey-177p2.6 (ENSXMAG00000008172)	ENSXMAG00000024007	ENSXMAG00000025271	exoc3l4 (ENSXMAG00000014925)	ENSXMAG00000014914	vps29 (ENSXMAG00000024591)	eif5 (ENSXMAG00000025924)	mark3a (ENSXMAG00000014822)
Platyfish	MODERN SPECIES	10	ATRN (ENSXMAG00000002433)	ENSXMAG00000023573	EIF2AK3 (ENSXMAG00000002407)	rpia (ENSXMAG00000002395)	slc4a11 (ENSXMAG00000025385)	ENSXMAG00000024583	dnaaf9 (ENSXMAG00000007136)	ENSXMAG00000025775	ENSXMAG00000030023	ENSXMAG00000023134	foxi2 (ENSXMAG00000025063)	ENSXMAG00000004701	ENSXMAG00000021715	fgfr3 (ENSXMAG00000026115) #20	letm1 (ENSXMAG00000008107) ##21	ENSXMAG00000026440 #22	nsd2 (ENSXMAG00000008116) #22	jade1 (ENSXMAG00000008136)	asmt2 (ENSXMAG00000009925)	pgrmc2 (ENSXMAG00000024645)	ENSXMAG00000008150	ENSXMAG00000022268	ahsa1b (ENSXMAG00000022100)	cdca4 (ENSXMAG00000019446)	si:dkey-177p2.6 (ENSXMAG00000008172)	ENSXMAG00000024007	ENSXMAG00000025271	exoc3l4 (ENSXMAG00000014925)	ENSXMAG00000014914	vps29 (ENSXMAG00000024591)	eif5 (ENSXMAG00000025924)
Poecilia	ANCESTRAL SPECIES	44	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00940000168737	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000161979.B.o.cb.d.a.a.b.a.a	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT00390000012669	ENSGT00390000016478	ENSGT00940000154862.x.b.b
Guppy	MODERN SPECIES	453	gfra4a (ENSPREG00000006867)	ATRN (ENSPREG00000006804)	EIF2AK3 (ENSPREG00000006747)	rpia (ENSPREG00000006713)	slc4a11 (ENSPREG00000006620)	ENSPREG00000006563	ENSPREG00000006519	dnaaf9 (ENSPREG00000006418)	ENSPREG00000006376	ENSPREG00000006385	ENSPREG00000006360	foxi2 (ENSPREG00000006353)	ENSPREG00000006345	fgfr3 (ENSPREG00000006269) #20	letm1 (ENSPREG00000006148) ##21	nsd2 (ENSPREG00000006099) #22	jade1 (ENSPREG00000006043)	pgrmc2 (ENSPREG00000006009)	ENSPREG00000005980	ENSPREG00000005955	ENSPREG00000005946	cdca4 (ENSPREG00000005921)	ENSPREG00000005914	ahsa1b (ENSPREG00000005888)	ENSPREG00000005850	ENSPREG00000005825	exoc3l4 (ENSPREG00000005791)	ENSPREG00000005761	vps29 (ENSPREG00000005729)	eif5 (ENSPREG00000005696)	ENSPREG00000005677
NAME_6	ANCESTRAL SPECIES	415												ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228.c	ENSGT00940000159744.c
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	517														fgfr3 (ENSPLAG00000005710) #20	letm1 (ENSPLAG00000005685) ##21	ENSPLAG00000005649 #22	nsd2 (ENSPLAG00000005631) #22	jade1 (ENSPLAG00000000833)	asmt2 (ENSPLAG00000005587)	pgrmc2 (ENSPLAG00000005522)
Sailfin molly	MODERN SPECIES	517													fgfr3 (ENSPLAG00000005710) #20	letm1 (ENSPLAG00000005685) ##21	ENSPLAG00000005649 #22	nsd2 (ENSPLAG00000005631) #22	jade1 (ENSPLAG00000000833)	asmt2 (ENSPLAG00000005587)	pgrmc2 (ENSPLAG00000005522)
Amazon molly	MODERN SPECIES	477												foxi2 (ENSPFOG00000002886)	ENSPFOG00000002904	fgfr3 (ENSPFOG00000002944) #20	letm1 (ENSPFOG00000003309) ##21	nsd2 (ENSPFOG00000003560) #22	jade1 (ENSPFOG00000003792)	asmt2 (ENSPFOG00000003894)	pgrmc2 (ENSPFOG00000003988)
Percomorphaceae_C	ANCESTRAL SPECIES	12	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000163336	ENSGT00990000210253	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01050000245132
Percomorphaceae_D	ANCESTRAL SPECIES	10	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a.b	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000163336	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01050000245132	ENSGT00390000012669
Anabantaria	ANCESTRAL SPECIES	10	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a.b	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000160366	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000163336	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01050000245132
Anabantoidei	ANCESTRAL SPECIES	9	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a.b	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000163336	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478
Climbing perch	MODERN SPECIES	13	noto (ENSATEG00000018628)	ENSATEG00000018533	ap5s1 (ENSATEG00000028095)	gfra4a (ENSATEG00000018486)	ENSATEG00000018402	ENSATEG00000018381	rpia (ENSATEG00000018351)	slc4a11 (ENSATEG00000018312)	ENSATEG00000026508	dnaaf9 (ENSATEG00000018228)	ENSATEG00000018218	foxi2 (ENSATEG00000018209)	ENSATEG00000018171	fgfr3 (ENSATEG00000018092) #20	letm1 (ENSATEG00000018058) ##21	nsd2 (ENSATEG00000018035) #22	jade1 (ENSATEG00000017984)	asmt2 (ENSATEG00000017902)	pgrmc2 (ENSATEG00000017889)	ENSATEG00000017849	ENSATEG00000028173	ENSATEG00000017803	ENSATEG00000017795	ENSATEG00000017781	ENSATEG00000017717	ENSATEG00000017681	ENSATEG00000017664	ENSATEG00000017628	ENSATEG00000017616	ENSATEG00000017542	EIF5 (ENSATEG00000017486)
Siamese fighting fish	MODERN SPECIES	12	noto (ENSBSLG00000026192)	ENSBSLG00000026193	ap5s1 (ENSBSLG00000026195)	gfra4a (ENSBSLG00000007809)	ATRN (ENSBSLG00000008056)	EIF2AK3 (ENSBSLG00000010481)	rpia (ENSBSLG00000011279)	slc4a11 (ENSBSLG00000011321)	ENSBSLG00000011609	ENSBSLG00000011695	ENSBSLG00000011833	foxi2 (ENSBSLG00000011857)	fgfr3 (ENSBSLG00000012509) #20	ENSBSLG00000020752	letm1 (ENSBSLG00000021202) ##21	nsd2 (ENSBSLG00000021796) #22	jade1 (ENSBSLG00000022795)	asmt2 (ENSBSLG00000022842)	pgrmc2 (ENSBSLG00000022883)	LARP1B (ENSBSLG00000022931)	ENSBSLG00000023136	ahsa1b (ENSBSLG00000023153)	cdca4 (ENSBSLG00000023230)	si:dkey-177p2.6 (ENSBSLG00000023234)	ENSBSLG00000023237	ENSBSLG00000023246	exoc3l4 (ENSBSLG00000023256)	ENSBSLG00000023276	ENSBSLG00000023285	ENSBSLG00000023308	vps29 (ENSBSLG00000023314)
Zig-zag eel	MODERN SPECIES	14	noto (ENSMAMG00000000100)	ENSMAMG00000000099	ap5s1 (ENSMAMG00000000098)	gfra4a (ENSMAMG00000000097)	ENSMAMG00000000096	ENSMAMG00000000095	rpia (ENSMAMG00000000094)	slc4a11 (ENSMAMG00000000093)	ENSMAMG00000000092	dnaaf9 (ENSMAMG00000000091)	ENSMAMG00000000090	foxi2 (ENSMAMG00000000089)	ENSMAMG00000028428	fgfr3 (ENSMAMG00000000087) #20	letm1 (ENSMAMG00000000086) ##21	nsd2 (ENSMAMG00000000085) #22	jade1 (ENSMAMG00000000084)	asmt2 (ENSMAMG00000000083)	pgrmc2 (ENSMAMG00000000082)	ENSMAMG00000000081	ENSMAMG00000000080	ENSMAMG00000026494	ENSMAMG00000000078	ENSMAMG00000000077	ENSMAMG00000000076	ENSMAMG00000000074	ENSMAMG00000000075	ENSMAMG00000000073	ENSMAMG00000025617	ENSMAMG00000000072	ENSMAMG00000000068
Carangaria	ANCESTRAL SPECIES	10	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a.b	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT00390000012669	ENSGT00390000016478	ENSGT00940000154862.x.b
Pleuronectoidei	ANCESTRAL SPECIES	5	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a.b	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000163336	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT00390000012669	ENSGT00390000016478	ENSGT00940000154862.x.b
Tongue sole	MODERN SPECIES		noto (ENSCSEG00000015654)	ENSCSEG00000015640	ap5s1 (ENSCSEG00000015633)	ENSCSEG00000015630	gfra4a (ENSCSEG00000015617)	ATRN (ENSCSEG00000015399)	EIF2AK3 (ENSCSEG00000015368)	rpia (ENSCSEG00000015347)	slc4a11 (ENSCSEG00000015287)	ENSCSEG00000015265	dnaaf9 (ENSCSEG00000015244)	ENSCSEG00000015236	foxi2 (ENSCSEG00000015231)	fgfr3 (ENSCSEG00000015127) #20	letm1 (ENSCSEG00000013635) ##21	nsd2 (ENSCSEG00000013567) #22	jade1 (ENSCSEG00000013541)	pgrmc2 (ENSCSEG00000013533)	ENSCSEG00000013519	ENSCSEG00000013509	ahsa1b (ENSCSEG00000013438)	cdca4 (ENSCSEG00000013426)	si:dkey-177p2.6 (ENSCSEG00000013418)	ENSCSEG00000013411	ENSCSEG00000013406	exoc3l4 (ENSCSEG00000013401)	ENSCSEG00000013393	vps29 (ENSCSEG00000013380)	eif5 (ENSCSEG00000013347)	mark3a (ENSCSEG00000013207)	ENSCSEG00000013191
Turbot	MODERN SPECIES	8	noto (ENSSMAG00000007744)	ENSSMAG00000007692	ap5s1 (ENSSMAG00000007672)	gfra4a (ENSSMAG00000007459)	ENSSMAG00000007222	ENSSMAG00000007109	rpia (ENSSMAG00000007050)	slc4a11 (ENSSMAG00000006939)	dnaaf9 (ENSSMAG00000006894)	ENSSMAG00000006880	ENSSMAG00000006870	foxi2 (ENSSMAG00000006868)	ENSSMAG00000006841	fgfr3 (ENSSMAG00000006801) #20	letm1 (ENSSMAG00000006721) ##21	nsd2 (ENSSMAG00000006581) #22	jade1 (ENSSMAG00000006505)	asmt2 (ENSSMAG00000006433)	pgrmc2 (ENSSMAG00000006418)	ENSSMAG00000006347	ENSSMAG00000006294	ENSSMAG00000034451	ENSSMAG00000006250	ENSSMAG00000024708	ENSSMAG00000006093	ENSSMAG00000006072	EIF5 (ENSSMAG00000006036)	mark3a (ENSSMAG00000005737)	ENSSMAG00000006025	ckba (ENSSMAG00000005705)	trmt61a (ENSSMAG00000005682)
Carangaria_A	ANCESTRAL SPECIES	4	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352.x	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a.b	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478
Barramundi perch	MODERN SPECIES	313						ATRN (ENSLCAG00010003042)	EIF2AK3 (ENSLCAG00010002880)	rpia (ENSLCAG00010002841)	slc4a11 (ENSLCAG00010002780)	dnaaf9 (ENSLCAG00010002748)	ENSLCAG00010002729	foxi2 (ENSLCAG00010002728)	ENSLCAG00010002727	fgfr3 (ENSLCAG00010001228) #20	letm1 (ENSLCAG00010000790) ##21	nsd2 (ENSLCAG00010000746) #22
Seriola	ANCESTRAL SPECIES	3										ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a.b	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT00390000012669	ENSGT00390000016478	ENSGT00940000154862.x.b
Greater amberjack	MODERN SPECIES	62	DCTN1 (ENSSDUG00000003271)	ENSSDUG00000003470 ##25	SLC39A8 (ENSSDUG00000003482)	manba (ENSSDUG00000003513)	ube2d3 (ENSSDUG00000003535)	ENSSDUG00000003555	CPXM1 (ENSSDUG00000003604)	wdr32 (ENSSDUG00000003847)	HHIPL2 (ENSSDUG00000003875)	ENSSDUG00000003897	ENSSDUG00000003909	foxi2 (ENSSDUG00000003922)	ENSSDUG00000003927	fgfr3 (ENSSDUG00000003941) #20	letm1 (ENSSDUG00000004019) ##21	nsd2 (ENSSDUG00000004050) #22	jade1 (ENSSDUG00000004118)	asmt2 (ENSSDUG00000004145)	pgrmc2 (ENSSDUG00000004171)	ENSSDUG00000004182	ENSSDUG00000004235	ahsa1b (ENSSDUG00000004251)	cdca4 (ENSSDUG00000004270)	si:dkey-177p2.6 (ENSSDUG00000004283)	ENSSDUG00000004293	ENSSDUG00000004323	exoc3l4 (ENSSDUG00000004344)	ENSSDUG00000004423	vps29 (ENSSDUG00000004442)	eif5 (ENSSDUG00000004467)	mark3a (ENSSDUG00000004553)
Yellowtail amberjack	MODERN SPECIES	3262	arg2 (ENSSLDG00000010285)	vti1b (ENSSLDG00000010255)	rdh12 (ENSSLDG00000010235)	zfyve26 (ENSSLDG00000010028)	si:ch211-10a23.2 (ENSSLDG00000009977)	plek2 (ENSSLDG00000009959)	TC2N (ENSSLDG00000009938)	fbln5 (ENSSLDG00000009902)	trip11 (ENSSLDG00000009815)	ENSSLDG00000009780	ENSSLDG00000009767	foxi2 (ENSSLDG00000009754)	ENSSLDG00000009744	fgfr3 (ENSSLDG00000009653) #20	letm1 (ENSSLDG00000009580) ##21	nsd2 (ENSSLDG00000009511) #22	jade1 (ENSSLDG00000009486)
Eupercaria	ANCESTRAL SPECIES	9	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00940000180336	ENSGT00990000210253	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01050000245132	ENSGT00390000012669
Tetraodontidae	ANCESTRAL SPECIES	3	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00990000210253	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01050000245132	ENSGT00390000012669
Fugu	MODERN SPECIES	11	ap5s1 (ENSTRUG00000017581)	ENSTRUG00000032295	gfra4a (ENSTRUG00000031411)	ENSTRUG00000027485	ATRN (ENSTRUG00000001707)	rpia (ENSTRUG00000003878)	slc4a11 (ENSTRUG00000004080)	ENSTRUG00000022771	dnaaf9 (ENSTRUG00000027011)	ENSTRUG00000028684	foxi2 (ENSTRUG00000003477)	ENSTRUG00000023573	ENSTRUG00000026287	fgfr3 (ENSTRUG00000003670) #20	letm1 (ENSTRUG00000004634) ##21	nsd2 (ENSTRUG00000004854) #22	jade1 (ENSTRUG00000005254)	pgrmc2 (ENSTRUG00000022501)	ENSTRUG00000005612	ENSTRUG00000023154	ahsa1b (ENSTRUG00000022592)	cdca4 (ENSTRUG00000022645)	si:dkey-177p2.6 (ENSTRUG00000020492)	ENSTRUG00000030284	ENSTRUG00000027669	ENSTRUG00000029360	ENSTRUG00000024591	ENSTRUG00000006434	ENSTRUG00000029891	vps29 (ENSTRUG00000021451)	eif5 (ENSTRUG00000006600)
Tetraodon	MODERN SPECIES	1	emx1 (ENSTNIG00000010550)	noto (ENSTNIG00000010551)	CDC25B (ENSTNIG00000010552)	ap5s1 (ENSTNIG00000010553)	gfra4a (ENSTNIG00000010554)	ATRN (ENSTNIG00000010555)	EIF2AK3 (ENSTNIG00000010556)	rpia (ENSTNIG00000010557)	slc4a11 (ENSTNIG00000010558)	dnaaf9 (ENSTNIG00000010559)	ENSTNIG00000006756	ENSTNIG00000006744	foxi2 (ENSTNIG00000003048)	fgfr3 (ENSTNIG00000012404) #20	letm1 (ENSTNIG00000012403) ##21	nsd2 (ENSTNIG00000012402) #22	jade1 (ENSTNIG00000012401)	asmt2 (ENSTNIG00000012400)	pgrmc2 (ENSTNIG00000012399)	ENSTNIG00000012398	ahsa1b (ENSTNIG00000012397)	cdca4 (ENSTNIG00000012396)	exoc3l4 (ENSTNIG00000000979)	ENSTNIG00000000514	vps29 (ENSTNIG00000012395)	eif5 (ENSTNIG00000012394)	mark3a (ENSTNIG00000012393)	ckba (ENSTNIG00000012392)	trmt61a (ENSTNIG00000012391)	bag5 (ENSTNIG00000012390)	coa8 (ENSTNIG00000012389)
Eupecaria_A	ANCESTRAL SPECIES	10	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00940000180336	ENSGT00940000163336	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478
Eupecaria_B	ANCESTRAL SPECIES	11	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00940000180336	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478	ENSGT00940000154862.x.b
Eupecaria_C	ANCESTRAL SPECIES	8	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478	ENSGT00940000154862.x.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	25	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478	ENSGT00940000154862.x.b
European seabass	MODERN SPECIES	2	emx1 (ENSDLAG00005030328)	noto (ENSDLAG00005030909)	ENSDLAG00005022395	ap5s1 (ENSDLAG00005022398)	gfra4a (ENSDLAG00005022401)	ENSDLAG00005022413	ENSDLAG00005022530	slc4a11 (ENSDLAG00005023152)	dnaaf9 (ENSDLAG00005023328)	ENSDLAG00005031783	ENSDLAG00005023524	ENSDLAG00005030932	foxi2 (ENSDLAG00005032945)	fgfr3 (ENSDLAG00005023582) #20	letm1 (ENSDLAG00005024363) ##21	nsd2 (ENSDLAG00005024506) #22	jade1 (ENSDLAG00005024607)	asmt2 (ENSDLAG00005024622)	pgrmc2 (ENSDLAG00005033902)	ENSDLAG00005024642	ENSDLAG00005004153	ENSDLAG00005028608	ENSDLAG00005027228	ENSDLAG00005032534	ENSDLAG00005004265	ENSDLAG00005004281	ENSDLAG00005018914	ENSDLAG00005033435	ENSDLAG00005004580	EIF5 (ENSDLAG00005004663)	mark3a (ENSDLAG00005004906)
Large yellow croaker	MODERN SPECIES	495	CDC25B (ENSLCRG00005014443)	ap5s1 (ENSLCRG00005014442)	gfra4a (ENSLCRG00005014441)	ATRN (ENSLCRG00005014389)	EIF2AK3 (ENSLCRG00005013431)	rpia (ENSLCRG00005013425)	slc4a11 (ENSLCRG00005013384)	ENSLCRG00005013383	dnaaf9 (ENSLCRG00005013378)	ENSLCRG00005013375	ENSLCRG00005013374	foxi2 (ENSLCRG00005019904)	ENSLCRG00005019903	fgfr3 (ENSLCRG00005010056) #20	letm1 (ENSLCRG00005008975) ##21	nsd2 (ENSLCRG00005008967) #22	ENSLCRG00005008962	jade1 (ENSLCRG00005008961)	asmt2 (ENSLCRG00005008960)	pgrmc2 (ENSLCRG00005008958)	ENSLCRG00005008789	ENSLCRG00005008787	ahsa1b (ENSLCRG00005008785)	cdca4 (ENSLCRG00005008784)	si:dkey-177p2.6 (ENSLCRG00005008783)	ENSLCRG00005008782	exoc3l4 (ENSLCRG00005008774)	ENSLCRG00005008764	ENSLCRG00005008763	vps29 (ENSLCRG00005008758)	ENSLCRG00005008756
Gilthead seabream	MODERN SPECIES	7	ap5s1 (ENSSAUG00010014251)	gfra4a (ENSSAUG00010014250)	ATRN (ENSSAUG00010023368)	EIF2AK3 (ENSSAUG00010022861)	rpia (ENSSAUG00010022854)	slc4a11 (ENSSAUG00010022849)	ENSSAUG00010022847	dnaaf9 (ENSSAUG00010022586)	ENSSAUG00010022577	ENSSAUG00010022575	foxi2 (ENSSAUG00010022573)	ENSSAUG00010022572	ENSSAUG00010022571	fgfr3 (ENSSAUG00010021636) #20	letm1 (ENSSAUG00010020913) ##21	nsd2 (ENSSAUG00010020727) #22	jade1 (ENSSAUG00010020725)	asmt2 (ENSSAUG00010020724)	pgrmc2 (ENSSAUG00010020722)	ENSSAUG00010020475	ENSSAUG00010020464	ahsa1b (ENSSAUG00010020460)	cdca4 (ENSSAUG00010020459)	si:dkey-177p2.6 (ENSSAUG00010020457)	ENSSAUG00010020454	ENSSAUG00010020452	exoc3l4 (ENSSAUG00010020446)	ENSSAUG00010020422	zfyve21 (ENSSAUG00010020416)	klc1a (ENSSAUG00010020199)	coa8 (ENSSAUG00010020197)
Perciformes	ANCESTRAL SPECIES	12	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00940000180336	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT00390000012669	ENSGT00390000016478	ENSGT00940000154862.x.b	ENSGT01030000234877
Perciformes_a	ANCESTRAL SPECIES	10	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596	ENSGT00390000003692	ENSGT00940000168737	ENSGT00940000165600	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00940000160366	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT00390000012669	ENSGT00390000016478	ENSGT00940000154862.x.b	ENSGT01030000234877
Pike perch	DUPLICATION
Pike perch	MODERN SPECIES	53		ENSSLUG00000020044	EIF2AK3 (ENSSLUG00000020079)	rpia (ENSSLUG00000020684)	slc4a11 (ENSSLUG00000020706)	ENSSLUG00000020759	dnaaf9 (ENSSLUG00000020769)	ENSSLUG00000020797	foxi2 (ENSSLUG00000020799)	ENSSLUG00000020801	ENSSLUG00000020809	ENSSLUG00000020814	ENSSLUG00000020819	fgfr3 (ENSSLUG00000020851) #20	letm1 (ENSSLUG00000021563) ##21	ENSSLUG00000022447 #22	nsd2 (ENSSLUG00000022469) #22	jade1 (ENSSLUG00000022478)	asmt2 (ENSSLUG00000022489)	pgrmc2 (ENSSLUG00000022500)	ENSSLUG00000022505	ENSSLUG00000022516	ENSSLUG00000022557	ahsa1b (ENSSLUG00000022566)	cdca4 (ENSSLUG00000022582)	si:dkey-177p2.6 (ENSSLUG00000022587)	ENSSLUG00000022591	ENSSLUG00000022602	exoc3l4 (ENSSLUG00000022607)	TNFAIP2 (ENSSLUG00000022625)	vps29 (ENSSLUG00000008952)
Pike perch	MODERN SPECIES	53	ENSSLUG00000020044	EIF2AK3 (ENSSLUG00000020079)	rpia (ENSSLUG00000020684)	slc4a11 (ENSSLUG00000020706)	ENSSLUG00000020759	dnaaf9 (ENSSLUG00000020769)	ENSSLUG00000020797	foxi2 (ENSSLUG00000020799)	ENSSLUG00000020801	ENSSLUG00000020809	ENSSLUG00000020814	ENSSLUG00000020819	fgfr3 (ENSSLUG00000020851) #20	letm1 (ENSSLUG00000021563) ##21	ENSSLUG00000022447 #22	nsd2 (ENSSLUG00000022469) #22	jade1 (ENSSLUG00000022478)	asmt2 (ENSSLUG00000022489)	pgrmc2 (ENSSLUG00000022500)	ENSSLUG00000022505	ENSSLUG00000022516	ENSSLUG00000022557	ahsa1b (ENSSLUG00000022566)	cdca4 (ENSSLUG00000022582)	si:dkey-177p2.6 (ENSSLUG00000022587)	ENSSLUG00000022591	ENSSLUG00000022602	exoc3l4 (ENSSLUG00000022607)	TNFAIP2 (ENSSLUG00000022625)	vps29 (ENSSLUG00000008952)	eif5 (ENSSLUG00000008983)
Channel bull blenny	MODERN SPECIES	14	gfra4a (ENSCGOG00000022614)	ATRN (ENSCGOG00000022488)	EIF2AK3 (ENSCGOG00000022353)	rpia (ENSCGOG00000022345)	slc4a11 (ENSCGOG00000022246)	ENSCGOG00000022240	ENSCGOG00000022239	ENSCGOG00000022235	ENSCGOG00000022231	ENSCGOG00000022229	ENSCGOG00000022230	foxi2 (ENSCGOG00000022228)	ENSCGOG00000022222	fgfr3 (ENSCGOG00000022164) #20	letm1 (ENSCGOG00000022073) ##21	nsd2 (ENSCGOG00000021958) #22	jade1 (ENSCGOG00000021944)	asmt2 (ENSCGOG00000021940)	pgrmc2 (ENSCGOG00000021936)	ENSCGOG00000021921	ENSCGOG00000021917	ahsa1b (ENSCGOG00000021892)	cdca4 (ENSCGOG00000021889)	ENSCGOG00000021887	ENSCGOG00000021885	ENSCGOG00000021883	TNFAIP2 (ENSCGOG00000021878)	vps29 (ENSCGOG00000021863)	eif5 (ENSCGOG00000021717)	mark3a (ENSCGOG00000020496)	ENSCGOG00000020425
Cottioidei	ANCESTRAL SPECIES	8	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00390000003692	ENSGT00940000164100.B	ENSGT00940000162161.B	ENSGT00940000166929	ENSGT00940000162660.b.a.g.a	ENSGT00940000159880 #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429.d #22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00940000180336	ENSGT00940000168728	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a	ENSGT00390000012669	ENSGT00390000016478	ENSGT00940000154862.x.b	ENSGT00950000182772.A.a.b.`b.a	ENSGT00940000154239.a
Lumpfish	MODERN SPECIES	14	ENSCLMG00005014885	ap5s1 (ENSCLMG00005014881)	gfra4a (ENSCLMG00005014879)	ENSCLMG00005014877	ATRN (ENSCLMG00005014797)	EIF2AK3 (ENSCLMG00005014378)	rpia (ENSCLMG00005014367)	slc4a11 (ENSCLMG00005014040)	dnaaf9 (ENSCLMG00005014012)	ENSCLMG00005014002	ENSCLMG00005014000	foxi2 (ENSCLMG00005013997)	ENSCLMG00005013994	fgfr3 (ENSCLMG00005007355) #20	letm1 (ENSCLMG00005007206) ##21	nsd2 (ENSCLMG00005005973) #22	d2hgdh (ENSCLMG00005005926)	acvr1l (ENSCLMG00005005907)	otomp (ENSCLMG00005005903)	ENSCLMG00005005902	hs6st1b (ENSCLMG00005005851)	uggt1 (ENSCLMG00005005178)	ENSCLMG00005005163	ola1 (ENSCLMG00005004853)	TRA2B (ENSCLMG00005004845)	ENSCLMG00005004839	ENSCLMG00005004838	atg9a (ENSCLMG00005004828)	ENSCLMG00005003159	ENSCLMG00005003092	ENSCLMG00005003024
Stickleback	MODERN SPECIES	15	ankrd9 (ENSGACG00000004348)	tecpr2 (ENSGACG00000004351)	ENSGACG00000004368	ENSGACG00000004369	cinp (ENSGACG00000004371)	dkc1 (ENSGACG00000004373)	ATRN (ENSGACG00000004400)	EIF2AK3 (ENSGACG00000004416)	rpia (ENSGACG00000004430)	slc4a11 (ENSGACG00000004484)	dnaaf9 (ENSGACG00000004495)	ENSGACG00000004515	ENSGACG00000004525	fgfr3 (ENSGACG00000004533) #20	letm1 (ENSGACG00000004541) ##21	nsd2 (ENSGACG00000004554) #22	jade1 (ENSGACG00000004571)	asmt2 (ENSGACG00000004587)	ENSGACG00000004598	pgrmc2 (ENSGACG00000004602)	ENSGACG00000004609	ahsa1b (ENSGACG00000004625)	cdca4 (ENSGACG00000004663)	si:dkey-177p2.6 (ENSGACG00000004666)	ENSGACG00000004669	ENSGACG00000004674	exoc3l4 (ENSGACG00000004676)	ENSGACG00000004683	ENSGACG00000004692	ENSGACG00000004696	vps29 (ENSGACG00000004700)
Pinecone sodierfish	MODERN SPECIES	14	ENSMMDG00005017008	ap5s1 (ENSMMDG00005017007)	ENSMMDG00005017006	ENSMMDG00005017005	gfra4a (ENSMMDG00005017001)	ATRN (ENSMMDG00005016943)	EIF2AK3 (ENSMMDG00005015749)	rpia (ENSMMDG00005015723)	slc4a11 (ENSMMDG00005015611)	dnaaf9 (ENSMMDG00005015587)	ENSMMDG00005015584	foxi2 (ENSMMDG00005015580)	ENSMMDG00005015576	fgfr3 (ENSMMDG00005015568) #20	letm1 (ENSMMDG00005015316) ##21	nsd2 (ENSMMDG00005014727) #22	jade1 (ENSMMDG00005014709)	asmt2 (ENSMMDG00005014707)	pgrmc2 (ENSMMDG00005014706)	ENSMMDG00005014699	ENSMMDG00005014698	ahsa1b (ENSMMDG00005014695)	cdca4 (ENSMMDG00005014694)	si:dkey-177p2.6 (ENSMMDG00005014693)	ENSMMDG00005014691	ENSMMDG00005014688	ENSMMDG00005014686	vps29 (ENSMMDG00005014685)	eif5 (ENSMMDG00005014680)	mark3a (ENSMMDG00005014673)	ENSMMDG00005014671
Cod	MODERN SPECIES	18	ENSGMOG00000036545	ENSGMOG00000030538	ENSGMOG00000025584	ENSGMOG00000029142	ENSGMOG00000036234	ENSGMOG00000027819	ENSGMOG00000036081	ENSGMOG00000032123	ENSGMOG00000015246	ENSGMOG00000023308	ENSGMOG00000034034	ENSGMOG00000023915	ENSGMOG00000012716	fgfr3 (ENSGMOG00000003758) #20	ENSGMOG00000003799 ##21	nsd2 (ENSGMOG00000003846) #22	ENSGMOG00000020427	ENSGMOG00000005281	ENSGMOG00000030114	ENSGMOG00000005207	ENSGMOG00000005198	jade1 (ENSGMOG00000005171)	ENSGMOG00000028115	ENSGMOG00000020082	ENSGMOG00000013922	ENSGMOG00000013956	ENSGMOG00000000359	ENSGMOG00000036418	ENSGMOG00000005548	ENSGMOG00000031450	ENSGMOG00000003949
Otomorpha	ANCESTRAL SPECIES	95	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596.c	ENSGT00390000003692	ENSGT00940000168737	ENSGT00940000165600	ENSGT00940000162255	ENSGT00940000166929	ENSGT00940000159880.a #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429 #22
Clupeiformes	ANCESTRAL SPECIES	23	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596.c	ENSGT00940000168737	ENSGT00940000165600	ENSGT00390000003692	ENSGT00940000162255	ENSGT00940000166929	ENSGT00940000159880.a #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429 #22	ENSGT00940000154782.d	ENSGT00940000157417	ENSGT00390000017666	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157547	ENSGT00940000164834.a	ENSGT00950000182963.a.a	ENSGT00940000154607.a	ENSGT00510000048137	ENSGT00940000162505.b	ENSGT01100000263595	ENSGT00590000083139.c	ENSGT00390000009688	ENSGT00940000160140.b
Denticle herring	MODERN SPECIES		noto (ENSDCDG00000030660)	ENSDCDG00000030657	ap5s1 (ENSDCDG00000030656)	ENSDCDG00000030654	gfra4a (ENSDCDG00000030651)	ATRN (ENSDCDG00000030198)	EIF2AK3 (ENSDCDG00000030077)	rpia (ENSDCDG00000030063)	slc4a11 (ENSDCDG00000030019)	ENSDCDG00000029993	dnaaf9 (ENSDCDG00000029981)	cfd (ENSDCDG00000029974)	foxi2 (ENSDCDG00000029972)	fgfr3 (ENSDCDG00000016838) #20	letm1 (ENSDCDG00000016134) ##21	nsd2 (ENSDCDG00000016105) #22	lgmn (ENSDCDG00000014882)	PCNX1 (ENSDCDG00000014737)	med6 (ENSDCDG00000014654)	TTC9 (ENSDCDG00000014648)	MAP3K9 (ENSDCDG00000014642)	slc8a3 (ENSDCDG00000014628)	ENSDCDG00000014624	NHSL1 (ENSDCDG00000014616)	ENSDCDG00000014605	ENSDCDG00000014601	ENSDCDG00000014597	ccdc28a (ENSDCDG00000014594)	ENSDCDG00000014592	ENSDCDG00000014591	ENSDCDG00000014557
Atlantic herring	MODERN SPECIES	5	gfra4a (ENSCHAG00000013439)	ATRN (ENSCHAG00000013495)	ENSCHAG00000015974	ENSCHAG00000015989	ATRN (ENSCHAG00000015998)	ENSCHAG00000016280	rpia (ENSCHAG00000017356)	slc4a11 (ENSCHAG00000017790)	ENSCHAG00000017944	ENSCHAG00000017957	ENSCHAG00000017975	cfd (ENSCHAG00000018050)	foxi2 (ENSCHAG00000018055)	fgfr3 (ENSCHAG00000018255) #20	letm1 (ENSCHAG00000022579) ##21	nsd2 (ENSCHAG00000022726) #22	lgmn (ENSCHAG00000022859)	PCNX1 (ENSCHAG00000022920)	med6 (ENSCHAG00000023014)	mrpl9 (ENSCHAG00000023029)	TTC9 (ENSCHAG00000023039)	MAP3K9 (ENSCHAG00000023050)	slc8a3 (ENSCHAG00000023168)	ENSCHAG00000023170	NHSL1 (ENSCHAG00000023180)	ENSCHAG00000023233	SH3YL1 (ENSCHAG00000023242)	alkal2b (ENSCHAG00000023252)	ENSCHAG00000023264	APOB (ENSCHAG00000023273)	ldah (ENSCHAG00000023320)
Otophysi	ANCESTRAL SPECIES	29	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596.c	ENSGT00390000003692	ENSGT00940000162255	ENSGT00940000166929	ENSGT00940000159880.a #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429 #22	ENSGT00640000091487	ENSGT00390000005644	ENSGT00940000156665.b	ENSGT00940000154194.c.b	ENSGT00940000154340.A	ENSGT00940000164529	ENSGT00940000158205	ENSGT00940000156627.b	ENSGT00940000156946	ENSGT01100000263524.I	ENSGT00390000013159	ENSGT00910000144274	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B
Characiphysae	ANCESTRAL SPECIES	13	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121.g	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596.c	ENSGT00390000003692	ENSGT00940000162255	ENSGT00940000166929	ENSGT00940000159880.a #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429 #22	ENSGT00640000091487.n	ENSGT00390000005644	ENSGT00940000156665.b	ENSGT00940000154194.c.b	ENSGT00940000154340.A	ENSGT00940000164529	ENSGT00940000158205	ENSGT00940000156627.b	ENSGT00940000156946	ENSGT01100000263524.I	ENSGT00390000013159	ENSGT00910000144274	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B
Channel catfish	MODERN SPECIES	22	emx1 (ENSIPUG00000006240)	noto (ENSIPUG00000006256)	cdc25b (ENSIPUG00000006277)	ap5s1 (ENSIPUG00000006335)	gfra4 (ENSIPUG00000006347)	atrn (ENSIPUG00000006366)	EIF2AK3 (ENSIPUG00000006562)	RPIA (ENSIPUG00000006637)	slc4a11 (ENSIPUG00000006703)	ENSIPUG00000006829	c3h20orf194 (ENSIPUG00000006847)	cfd (ENSIPUG00000006895)	foxi3 (ENSIPUG00000006943)	fgfr3 (ENSIPUG00000006963) #20	letm1 (ENSIPUG00000007104) ##21	Whsc1 (ENSIPUG00000007142) #22	kiaa1109 (ENSIPUG00000007197)	ENSIPUG00000007285	ENSIPUG00000007322	c3h9orf72 (ENSIPUG00000007366)	lingo2 (ENSIPUG00000007386)	eif4eb (ENSIPUG00000007404)	fam241a (ENSIPUG00000007430)	adh8a (ENSIPUG00000007448)	metap1 (ENSIPUG00000007488)	enpep (ENSIPUG00000007543)	rrh (ENSIPUG00000007616)	lamtor3 (ENSIPUG00000007638)	dapp1 (ENSIPUG00000007728)	atp10d (ENSIPUG00000007754)	ENSIPUG00000007827
Characiphysae_b	ANCESTRAL SPECIES	10	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121.g	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596.c	ENSGT00390000003692	ENSGT00940000162255	ENSGT00940000166929	ENSGT00940000159880.a #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429 #22	ENSGT00640000091487.n	ENSGT00390000005644	ENSGT00940000156665.b	ENSGT00940000154194.c.b	ENSGT00940000154340.A	ENSGT00940000164529	ENSGT00940000158205	ENSGT00940000156627.b	ENSGT00940000156946	ENSGT01100000263524.I	ENSGT00390000013159	ENSGT00910000144274	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	761													fgfr3 (ENSEEEG00000021684) #20	letm1 (ENSEEEG00000021641) ##21	ENSEEEG00000021633 #22	nsd2 (ENSEEEG00000021631) #22	kiaa1109 (ENSEEEG00000021629)	ENSEEEG00000021625	ENSEEEG00000021623	ENSEEEG00000021610	zgc:100846 (ENSEEEG00000021607)	lingo2b (ENSEEEG00000021606)	eif4eb (ENSEEEG00000021599)	fam241a (ENSEEEG00000021596)	adh8a (ENSEEEG00000021544)
Electric eel	MODERN SPECIES	761														fgfr3 (ENSEEEG00000021684) #20	letm1 (ENSEEEG00000021641) ##21	ENSEEEG00000021633 #22	nsd2 (ENSEEEG00000021631) #22	kiaa1109 (ENSEEEG00000021629)	ENSEEEG00000021625	ENSEEEG00000021623	ENSEEEG00000021610	zgc:100846 (ENSEEEG00000021607)	lingo2b (ENSEEEG00000021606)	eif4eb (ENSEEEG00000021599)	fam241a (ENSEEEG00000021596)	adh8a (ENSEEEG00000021544)
Characoidei	ANCESTRAL SPECIES	5	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121.g	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000165596.c	ENSGT00390000003692	ENSGT00940000162255	ENSGT00940000166929	ENSGT00940000159880.a #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429 #22	ENSGT00640000091487.n	ENSGT00390000005644	ENSGT00940000156665.b	ENSGT00940000154194.c.b	ENSGT00940000154340.A	ENSGT00940000164529	ENSGT00940000158205	ENSGT00940000156627.b	ENSGT00940000156946	ENSGT01100000263524.I	ENSGT00390000013159	ENSGT00910000144274	ENSGT00940000156728.r	ENSGT00940000156728.q	ENSGT00390000018121
Red-bellied piranha	MODERN SPECIES	15			ENSPNAG00000016935	ap5s1 (ENSPNAG00000016885)	gfra4a (ENSPNAG00000016876)	ATRN (ENSPNAG00000016846)	EIF2AK3 (ENSPNAG00000016647)	rpia (ENSPNAG00000004760)	slc4a11 (ENSPNAG00000016559)	ENSPNAG00000005139	dnaaf9 (ENSPNAG00000016454)	cfd (ENSPNAG00000016324)	foxi2 (ENSPNAG00000016257)	fgfr3 (ENSPNAG00000016220) #20	letm1 (ENSPNAG00000016131) ##21	nsd2 (ENSPNAG00000016100) #22	kiaa1109 (ENSPNAG00000015880)	zgc:100846 (ENSPNAG00000015616)	lingo2b (ENSPNAG00000015595)	eif4eb (ENSPNAG00000015574)	adh8a (ENSPNAG00000015259)	metap1 (ENSPNAG00000015240)	lrit3b (ENSPNAG00000015144)	enpep (ENSPNAG00000015117)	rrh (ENSPNAG00000006418)	lamtor3 (ENSPNAG00000015044)	dapp1 (ENSPNAG00000015025)	atp10d (ENSPNAG00000015013)	ENSPNAG00000014994	commd8 (ENSPNAG00000014975)	ENSPNAG00000014952
Mexicana tetra	MODERN SPECIES	17	zbtb18 (ENSAMXG00000042119)	adss2 (ENSAMXG00000002991)	desi2 (ENSAMXG00000029271)	gfra4a (ENSAMXG00000008284)	ATRN (ENSAMXG00000012199)	EIF2AK3 (ENSAMXG00000002628)	rpia (ENSAMXG00000030591)	slc4a11 (ENSAMXG00000012299)	ENSAMXG00000012313	dnaaf9 (ENSAMXG00000012330)	cfd (ENSAMXG00000038575)	foxi2 (ENSAMXG00000039729)	ENSAMXG00000037452	fgfr3 (ENSAMXG00000012387) #20	letm1 (ENSAMXG00000012451) ##21	nsd2 (ENSAMXG00000012476) #22	ENSAMXG00000029109	ENSAMXG00000030812	kiaa1109 (ENSAMXG00000012505)	ENSAMXG00000037749	PLAAT4 (ENSAMXG00000017456)	ENSAMXG00000017474	zgc:100846 (ENSAMXG00000017485)	lingo2b (ENSAMXG00000038637)	eif4eb (ENSAMXG00000041156)	fam241a (ENSAMXG00000031374)	ENSAMXG00000017535	ENSAMXG00000017546	ENSAMXG00000035262	ENSAMXG00000042028	metap1 (ENSAMXG00000033119)
Cyprinoidei	ANCESTRAL SPECIES	5	ENSGT00940000158783.a.a	ENSGT01030000234641.a.a.b	ENSGT00940000161476	ENSGT00940000154361.B	ENSGT00940000158524	ENSGT00390000013178	ENSGT00940000160491.d.a	ENSGT00940000157346	ENSGT00940000158121	ENSGT00390000004352	ENSGT00940000154894.b	ENSGT00940000168737	ENSGT00940000166929	ENSGT00940000159880.a #20	ENSGT00950000183167.a.a ##21	ENSGT00940000157429 #22	ENSGT00640000091487	ENSGT00390000005644	ENSGT00940000156665.b	ENSGT00940000154194.c.b	ENSGT00940000154340.A	ENSGT00940000164529	ENSGT00940000158205	ENSGT00940000156627.b	ENSGT00940000156946	ENSGT01100000263524.I	ENSGT00390000013159	ENSGT00910000144274	ENSGT00940000156728	ENSGT00390000018121	ENSGT00940000154713.B
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	62				ENSGT01040000240375.D.i.a	ENSGT00940000160491.d.a.b	ENSGT00940000157346.j	ENSGT00940000158121.f	ENSGT00390000004352.q	ENSGT00940000154894.b.c	ENSGT00940000165596.c.a	ENSGT00390000003692.b	ENSGT00940000162255.a	ENSGT00940000166929.c	ENSGT00940000159880.a.b #20	ENSGT00950000183167.a.a.d ##21	ENSGT00940000157429.g #22	ENSGT00640000091487.k	ENSGT00390000005644.l	ENSGT00940000156665.b.e	ENSGT00940000154194.c.b.d	ENSGT00940000154340.A.l	ENSGT00940000164529.h	ENSGT00940000158205.r	ENSGT00940000156946.g	ENSGT01100000263524.I.j	ENSGT00390000013159.a	ENSGT00910000144274.c	ENSGT00940000156728.t	ENSGT00390000018121	ENSGT00940000154713.B.e	ENSGT00940000160193.e
Cyprininae_a	ANCESTRAL SPECIES	171					ENSGT00940000160491.d.a.b	ENSGT00940000157346.j	ENSGT00940000158121.f	ENSGT00390000004352.q	ENSGT00940000154894.b.c	ENSGT00940000165596.c.a	ENSGT00390000003692.b	ENSGT00940000162255.a	ENSGT00940000166929.c	ENSGT00940000159880.a.b #20	ENSGT00950000183167.a.a.d ##21	ENSGT00940000157429.g #22	ENSGT00640000091487.k	ENSGT00390000005644.l	ENSGT00940000156665.b.e	ENSGT00940000154194.c.b.d	ENSGT00940000154340.A.l	ENSGT00940000164529.h	ENSGT00940000158205.r	ENSGT00940000156946.g	ENSGT01100000263524.I.j	ENSGT00390000013159.b	ENSGT00910000144274.d	ENSGT00940000156728.s	ENSGT00940000157895.s	ENSGT00390000018121.u	ENSGT00940000154245.B
Golden-line barbel	MODERN SPECIES	67													foxi2 (ENSSGRG00000014179)	fgfr3 (ENSSGRG00000014249) #20	letm1 (ENSSGRG00000019694) ##21	nsd2 (ENSSGRG00000020182) #22	kiaa1109 (ENSSGRG00000020841)	zgc:100846 (ENSSGRG00000021003)	lingo2b (ENSSGRG00000021056)	eif4eb (ENSSGRG00000021059)	fam241a (ENSSGRG00000021065)	ENSSGRG00000021083	ENSSGRG00000021212	metap1 (ENSSGRG00000021213)	enpep (ENSSGRG00000021359)	rrh (ENSSGRG00000021362)	lamtor3 (ENSSGRG00000021395)	dapp1 (ENSSGRG00000021368)	atp10d (ENSSGRG00000021423)	ENSSGRG00000021424	commd8 (ENSSGRG00000021425)
Common carp reference	MODERN SPECIES	18	noto (ENSCCRG00000044498)	ENSCCRG00000044458	ap5s1 (ENSCCRG00000044452)	ENSCCRG00000060030	gfra4a (ENSCCRG00000082232)	ENSCCRG00000045020	ENSCCRG00000041431	rpia (ENSCCRG00000061199)	slc4a11 (ENSCCRG00000044915)	ENSCCRG00000015549	dnaaf9 (ENSCCRG00000015540)	cfd (ENSCCRG00000029196)	foxi2 (ENSCCRG00000072720)	fgfr3 (ENSCCRG00000058736) #20	letm1 (ENSCCRG00000053607) ##21	nsd2 (ENSCCRG00000046693) #22	ENSCCRG00000019550	kiaa1109 (ENSCCRG00000047441)	ENSCCRG00000050644	zgc:100846 (ENSCCRG00000050650)	lingo2b (ENSCCRG00000069695)	fam241a (ENSCCRG00000065668)	eif4eb (ENSCCRG00000078755)	ENSCCRG00000054578	metap1 (ENSCCRG00000070654)	enpep (ENSCCRG00000051627)	rrh (ENSCCRG00000018382)	lamtor3 (ENSCCRG00000051622)	dapp1 (ENSCCRG00000051590)	atp10d (ENSCCRG00000051484)	commd8 (ENSCCRG00000051476)
Goldfish	MODERN SPECIES	4	ENSCARG00000016398	ENSCARG00000016385	spsb4b (ENSCARG00000016379)	CLSTN2 (ENSCARG00000016313)	ENSCARG00000016306	ENSCARG00000016299	ENSCARG00000016295	ENSCARG00000016289	ENSCARG00000016285	dnaaf9 (ENSCARG00000016094)	cfd (ENSCARG00000016075)	foxi2 (ENSCARG00000016066)	fgfr3 (ENSCARG00000013122) #20	ENSCARG00000012970	letm1 (ENSCARG00000011981) ##21	nsd2 (ENSCARG00000010915) #22	kiaa1109 (ENSCARG00000010221)	zgc:100846 (ENSCARG00000010145)	lingo2b (ENSCARG00000010139)	eif4eb (ENSCARG00000010124)	fam241a (ENSCARG00000010120)	ENSCARG00000010080	ENSCARG00000032385	metap1 (ENSCARG00000032342)	enpep (ENSCARG00000030668)	rrh (ENSCARG00000030573)	lamtor3 (ENSCARG00000030479)	dapp1 (ENSCARG00000030424)	atp10d (ENSCARG00000029767)	ENSCARG00000029649	GABRG1 (ENSCARG00000029621)
Cyprininae	ANCESTRAL SPECIES	96	ENSGT00940000161476.p	ENSGT00940000154361.B.c	ENSGT00940000158524.t	ENSGT00390000013178.d	ENSGT00940000160491.d.a.a	ENSGT00940000157346.i	ENSGT00940000158121.e	ENSGT00390000004352.r	ENSGT00940000154894.b.d	ENSGT00940000165596.c.b	ENSGT00390000003692.a	ENSGT00940000162255.b	ENSGT00940000166929.d	ENSGT00940000159880.a.a #20	ENSGT00950000183167.a.a.c ##21	ENSGT00940000157429.h #22	ENSGT00640000091487.l	ENSGT00390000005644.k	ENSGT00940000156665.b.f	ENSGT00940000154194.c.b.c	ENSGT00940000154340.A.k	ENSGT00940000164529.g.b	ENSGT00940000158205.q	ENSGT00940000156627.b	ENSGT00940000156946.h	ENSGT01100000263524.I.i
Cyprininae_a	ANCESTRAL SPECIES	32	ENSGT00940000161476.p	ENSGT00940000154361.B.c	ENSGT00940000158524.t	ENSGT00390000013178.d	ENSGT00940000160491.d.a.a	ENSGT00940000157346.i	ENSGT00940000158121.e	ENSGT00390000004352.r	ENSGT00940000154894.b.d	ENSGT00940000165596.c.b	ENSGT00390000003692.a	ENSGT00940000162255.b	ENSGT00940000166929.d	ENSGT00940000159880.a.a #20	ENSGT00950000183167.a.a.c ##21	ENSGT00940000157429.h #22	ENSGT00640000091487.l	ENSGT00390000005644.k	ENSGT00940000156665.b.f	ENSGT00940000154194.c.b.c	ENSGT00940000154340.A.k	ENSGT00940000164529.g.a	ENSGT00940000164529.g.b	ENSGT00940000158205.q	ENSGT00940000156627.b	ENSGT00940000156946.h	ENSGT01100000263524.I.i	ENSGT00390000013159.a	ENSGT00910000144274.c	ENSGT00940000156728.t	ENSGT00390000018121.v
Golden-line barbel	MODERN SPECIES	582					gfra4a (ENSSGRG00000042145)	ATRN (ENSSGRG00000042156)	ENSSGRG00000042442	rpia (ENSSGRG00000042444)	slc4a11 (ENSSGRG00000042497)	ENSSGRG00000042514	dnaaf9 (ENSSGRG00000042515)	cfd (ENSSGRG00000042516)	foxi2 (ENSSGRG00000042517)	fgfr3 (ENSSGRG00000042628) #20	letm1 (ENSSGRG00000048192) ##21	nsd2 (ENSSGRG00000048195) #22	kiaa1109 (ENSSGRG00000048357)	zgc:100846 (ENSSGRG00000048368)	lingo2b (ENSSGRG00000048453)	eif4eb (ENSSGRG00000048454)	fam241a (ENSSGRG00000048456)	ENSSGRG00000048459	metap1 (ENSSGRG00000048518)	lrit3b (ENSSGRG00000048928)	enpep (ENSSGRG00000048929)	rrh (ENSSGRG00000048933)	rrh (ENSSGRG00000048936)	dapp1 (ENSSGRG00000048939)	lamtor3 (ENSSGRG00000048943)	atp10d (ENSSGRG00000048961)	commd8 (ENSSGRG00000049209)
Common carp reference	MODERN SPECIES	48	emx1 (ENSCCRG00000044476)	ENSCCRG00000061568	noto (ENSCCRG00000080044)	ap5s1 (ENSCCRG00000044491)	gfra4a (ENSCCRG00000070363)	ENSCCRG00000006645	ENSCCRG00000060516	rpia (ENSCCRG00000082334)	slc4a11 (ENSCCRG00000044947)	ENSCCRG00000030230	dnaaf9 (ENSCCRG00000029209)	cfd (ENSCCRG00000066003)	foxi2 (ENSCCRG00000068553)	fgfr3 (ENSCCRG00000016440) #20	letm1 (ENSCCRG00000046655) ##21	nsd2 (ENSCCRG00000031982) #22	kiaa1109 (ENSCCRG00000031958)	zgc:100846 (ENSCCRG00000018346)	lingo2b (ENSCCRG00000057120)	fam241a (ENSCCRG00000054530)	eif4eb (ENSCCRG00000050652)	ENSCCRG00000063309	ENSCCRG00000053793	ENSCCRG00000075798	ENSCCRG00000082806	metap1 (ENSCCRG00000054277)	lrit3b (ENSCCRG00000018379)	enpep (ENSCCRG00000018380)	rrh (ENSCCRG00000066844)	lamtor3 (ENSCCRG00000004674)	dapp1 (ENSCCRG00000004657)
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	31	CATSPERE (ENSCARG00000013133)	desi2 (ENSCARG00000013123)	ENSCARG00000013118	DCTN1 (ENSCARG00000011119)	ENSCARG00000011031	ENSCARG00000011026 ##25	SLC39A8 (ENSCARG00000011018)	manba (ENSCARG00000010367)	ube2d3 (ENSCARG00000010170)	ENSCARG00000010158	sufu (ENSCARG00000009687)	trim8a (ENSCARG00000009668)	arl3a (ENSCARG00000009661)	arl3a (ENSCARG00000009659)	npm3 (ENSCARG00000009647)	nsd2 (ENSCARG00000009450) #22	ENSCARG00000009389	slka (ENSCARG00000008895)	arl3a (ENSCARG00000008842)	npm3 (ENSCARG00000008837)	oga (ENSCARG00000006595)	ENSCARG00000006425	gng2 (ENSCARG00000006418)	ENSCARG00000006353	ENSCARG00000006336	ENSCARG00000006238	commd8 (ENSCARG00000006224)	atp10d (ENSCARG00000006081)	dapp1 (ENSCARG00000039819)	lamtor3 (ENSCARG00000039661)	rrh (ENSCARG00000039603)
Goldfish	MODERN SPECIES	31	emx1 (ENSCARG00000030627)	noto (ENSCARG00000030643)	CDC25B (ENSCARG00000030662)	ap5s1 (ENSCARG00000030696)	gfra4a (ENSCARG00000030701)	ATRN (ENSCARG00000030751)	EIF2AK3 (ENSCARG00000031141)	rpia (ENSCARG00000032601)	slc4a11 (ENSCARG00000033147)	ENSCARG00000033507	dnaaf9 (ENSCARG00000033649)	cfd (ENSCARG00000035287)	foxi2 (ENSCARG00000035293)	fgfr3 (ENSCARG00000035328) #20	letm1 (ENSCARG00000036878) ##21	nsd2 (ENSCARG00000037434) #22	kiaa1109 (ENSCARG00000038130)	zgc:100846 (ENSCARG00000038516)	lingo2b (ENSCARG00000038560)	eif4eb (ENSCARG00000038570)	fam241a (ENSCARG00000038603)	ENSCARG00000038622	metap1 (ENSCARG00000038822)	enpep (ENSCARG00000038961)	rrh (ENSCARG00000039603)	lamtor3 (ENSCARG00000039661)	dapp1 (ENSCARG00000039819)	atp10d (ENSCARG00000006081)	commd8 (ENSCARG00000006224)	ENSCARG00000006238	ENSCARG00000006336
Zebrafish	MODERN SPECIES	4	cdc25b (ENSDARG00000010792)	ap5s1 (ENSDARG00000076755)	gfra4a (ENSDARG00000056651)	atrn (ENSDARG00000062164)	EIF2AK3 (ENSDARG00000062139)	rpia (ENSDARG00000056640)	slc4a11 (ENSDARG00000075532)	ENSDARG00000074036	dnaaf9 (ENSDARG00000079056)	cfd (ENSDARG00000039579)	ENSDARG00000056616	ENSDARG00000056598	foxi2 (ENSDARG00000069715)	fgfr3 (ENSDARG00000004782) #20	letm1 (ENSDARG00000056978) ##21	nsd2 (ENSDARG00000026225) #22	kiaa1109 (ENSDARG00000062330)	C13H9orf72 (ENSDARG00000011837)	lingo2b (ENSDARG00000069970)	eif4eb (ENSDARG00000013274)	fam241a (ENSDARG00000057006)	adh8a (ENSDARG00000091211)	adh8b (ENSDARG00000024278)	metap1 (ENSDARG00000033440)	lrit3b (ENSDARG00000057054)	enpep (ENSDARG00000057064)	rrh (ENSDARG00000039534)	si:dkey-20i10.7 (ENSDARG00000075269)	lamtor3 (ENSDARG00000057075)	dapp1 (ENSDARG00000039535)	atp10d (ENSDARG00000078887)
Spotted gar	MODERN SPECIES	670	baz2a (ENSLOCG00000007281)	pfkmb (ENSLOCG00000007256)	ENSLOCG00000007236	neurod4 (ENSLOCG00000018210)	ENSLOCG00000007224	ZNF385A (ENSLOCG00000007204)	gpr84 (ENSLOCG00000007191)	ITGB7 (ENSLOCG00000007182)	ENSLOCG00000007163	ENSLOCG00000007150	pfdn5 (ENSLOCG00000007134)	LARP4 (ENSLOCG00000007113)	tacc3 (ENSLOCG00000007068) #19	fgfr3 (ENSLOCG00000007042) #20	letm1 (ENSLOCG00000007015) ##21	nsd2 (ENSLOCG00000006985) #22	ENSLOCG00000006968	rnf4 (ENSLOCG00000006957) #34	ENSLOCG00000006938	zfyve28 (ENSLOCG00000006897) #31	atf7a (ENSLOCG00000006882)	dip2ba (ENSLOCG00000006838)	atf1 (ENSLOCG00000006826)	ENSLOCG00000006813	scn8aa (ENSLOCG00000006769)	fignl2 (ENSLOCG00000018208)	ENSLOCG00000006747	ENSLOCG00000006738	stat6 (ENSLOCG00000006721)	mipb (ENSLOCG00000006699)	ENSLOCG00000006686
Reedfish	MODERN SPECIES	13	fgfrl1a (ENSECRG00000018377) #8	ENSECRG00000018416 #9	spon2b (ENSECRG00000018430) #10	zgc:136929 (ENSECRG00000018480) #11	maea (ENSECRG00000018532) #13	uvssa (ENSECRG00000018560)	nkx1.2lb (ENSECRG00000018615) #15	FAM53A (ENSECRG00000018641) #16	ENSECRG00000018664	slbp (ENSECRG00000018696) #17	tmem129 (ENSECRG00000018728) #18	TACC3 (ENSECRG00000018753) #19	mrpl35 (ENSECRG00000018790)	FGFR3 (ENSECRG00000018877) #20	ENSECRG00000019343 ##21	ENSECRG00000019492 #22	rnf4 (ENSECRG00000019626) #34	CFAP99 (ENSECRG00000019657) #33	ENSECRG00000019702	zfyve28 (ENSECRG00000019753) #31	MXD4 (ENSECRG00000019862) #30	prelid1b (ENSECRG00000019891)	haus3 (ENSECRG00000019922) #29	nat8l (ENSECRG00000019942) #25	C4orf48 (ENSECRG00000019962) #24	nelfa (ENSECRG00000019984) #23	HSPA4L (ENSECRG00000020124)	plk4 (ENSECRG00000021463)	mfsd8 (ENSECRG00000021496)	abhd18 (ENSECRG00000021537)	LARP1B (ENSECRG00000021566)
Elephant shark	MODERN SPECIES	1563	ENSCMIG00000004918	osr1 (ENSCMIG00000004915)	ENSCMIG00000004913	ENSCMIG00000004909	rdh14b (ENSCMIG00000004906)	ENSCMIG00000004904	kcns3a (ENSCMIG00000004899)	ENSCMIG00000004895	ENSCMIG00000004891	TTC32 (ENSCMIG00000004884)	wdr35 (ENSCMIG00000004723)	matn3b (ENSCMIG00000004669)	laptm4a (ENSCMIG00000004662)	ENSCMIG00000004657	ENSCMIG00000004615 ##21	NSD2 (ENSCMIG00000004496) #22	ino80b (ENSCMIG00000004457)	nelfa (ENSCMIG00000004430) #23	ENSCMIG00000004412 #24	ENSCMIG00000004407	nat8l (ENSCMIG00000004402) #25	ENSCMIG00000004395 #28