Murinae	ANCESTRAL SPECIES	5	ENSGT00940000160075 #7	ENSGT00390000002757	ENSGT00390000015520	ENSGT00940000154964	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509.xc.a #15	ENSGT00390000003738.a.b #16	ENSGT00940000155708 #17	ENSGT00940000182224	ENSGT00950000183196.B #18	ENSGT00940000155015 #19	ENSGT00390000016029 #21	ENSGT00940000157005 #22	ENSGT01100000263484.C.b.a #23	ENSGT01070000253816.b #24	ENSGT00940000156699 #25	ENSGT00940000156299 #26	ENSGT00390000015332 #27	ENSGT00940000155789 #28	ENSGT01030000234598.a.b #29	ENSGT00940000153421.a.b #31	ENSGT01050000244888.b.a.c.b.h #32	ENSGT00940000157819 #34	ENSGT00940000161551 #33	ENSGT00940000154674 #35	ENSGT00910000144305 #36	ENSGT00390000015458 #37	ENSGT00940000155866
Mus	ANCESTRAL SPECIES	7	ENSGT00730000111293	ENSGT00940000161601 #9	ENSGT00940000156456 #10	ENSGT00940000161266 #11	ENSGT00940000162209 #12	ENSGT00390000012265	ENSGT00940000157208 #13	ENSGT00940000164694 #14	ENSGT00940000154509.xc.a #15	ENSGT00390000003738.a.b #16	ENSGT00940000155708 #17	ENSGT00940000182224	ENSGT00950000183196.B #18	ENSGT00940000155015 #19	ENSGT00390000016029 #21	ENSGT00940000157005 #22	ENSGT01100000263484.C.b.a #23	ENSGT01070000253816.b #24	ENSGT00940000156699 #25	ENSGT00940000156299 #26	ENSGT00390000015332 #27	ENSGT00940000155789 #28	ENSGT01030000234598.a.b #29	ENSGT00940000153421.a.b #31	ENSGT01050000244888.b.a.c.b.h #32	ENSGT00940000157819 #34	ENSGT00940000161551 #33	ENSGT00940000154674 #35	ENSGT00910000144305 #36	ENSGT00390000015458 #37	ENSGT00940000155866
Mus_A	ANCESTRAL SPECIES	9	ENSGT00730000111293	ENSGT00940000161601 #9	ENSGT00940000156456 #10	ENSGT00940000161266 #11	ENSGT00940000162209 #12	ENSGT00390000012265	ENSGT00940000157208 #13	ENSGT00940000164694 #14	ENSGT00940000154509.xc.a #15	ENSGT00390000003738.a.b #16	ENSGT00940000155708 #17	ENSGT00940000182224	ENSGT00950000183196.B #18	ENSGT00940000155015.b #20	ENSGT00390000016029 #21	ENSGT00940000157005 #22	ENSGT01100000263484.C.b.a #23	ENSGT01070000253816.b #24	ENSGT00940000156699 #25	ENSGT00940000156299 #26	ENSGT00390000015332 #27	ENSGT00940000155789 #28	ENSGT01030000234598.a.b #29	ENSGT00940000153421.a.b #31	ENSGT01050000244888.b.a.c.b.h #32	ENSGT00940000157819 #34	ENSGT00940000161551 #33	ENSGT00940000154674 #35	ENSGT00910000144305 #36	ENSGT00390000015458 #37	ENSGT00940000155866
Mus_B	ANCESTRAL SPECIES	8	ENSGT00730000111293	ENSGT00940000161601 #9	ENSGT00940000156456 #10	ENSGT00940000161266 #11	ENSGT00940000162209 #12	ENSGT00390000012265	ENSGT00940000157208 #13	ENSGT00940000164694 #14	ENSGT00940000154509.xc.a #15	ENSGT00390000003738.a.b #16	ENSGT00940000155708 #17	ENSGT00940000182224	ENSGT00950000183196.B #18	ENSGT00940000155015.b #20	ENSGT00390000016029 #21	ENSGT00940000157005 #22	ENSGT01100000263484.C.b.a #23	ENSGT01070000253816.b #24	ENSGT00940000156699 #25	ENSGT00940000156299 #26	ENSGT00390000015332 #27	ENSGT00940000155789 #28	ENSGT01030000234598.a.b #29	ENSGT00940000153421.a.b #31	ENSGT01050000244888.b.a.c.b.h #32	ENSGT00940000157819 #34	ENSGT00940000161551 #33	ENSGT00940000154674 #35	ENSGT00910000144305 #36	ENSGT00390000015458 #37	ENSGT00940000155866
Mus_C	ANCESTRAL SPECIES	6	ENSGT00730000111293	ENSGT00940000161601 #9	ENSGT00940000156456 #10	ENSGT00940000161266 #11	ENSGT00940000162209 #12	ENSGT00390000012265	ENSGT00940000157208 #13	ENSGT00940000164694 #14	ENSGT00940000154509.xc.a #15	ENSGT00390000003738.a.b #16	ENSGT00940000155708 #17	ENSGT00940000182224	ENSGT00950000183196.B #18	ENSGT00940000155015.b #20	ENSGT00390000016029 #21	ENSGT00940000157005 #22	ENSGT01100000263484.C.b.a #23	ENSGT01070000253816.b #24	ENSGT00940000156699 #25	ENSGT00940000156299 #26	ENSGT00390000015332 #27	ENSGT00940000155789 #28	ENSGT01030000234598.a.b #29	ENSGT00940000153421.a.b #31	ENSGT01050000244888.b.a.c.b.h #32	ENSGT00940000157819 #34	ENSGT00940000161551 #33	ENSGT00940000154674 #35	ENSGT00910000144305 #36	ENSGT00390000015458 #37	ENSGT00940000155866
spretus	MODERN SPECIES	12	Samd7 (MGP_SPRETEiJ_G0025839) #7	MGP_SPRETEiJ_G0025838 #8	Lrriq4 (MGP_SPRETEiJ_G0025837) #9	Lrrc34 (MGP_SPRETEiJ_G0025836) #10	Mynn (MGP_SPRETEiJ_G0025835) #11	Actrt3 (MGP_SPRETEiJ_G0025834) #12	Mecom (MGP_SPRETEiJ_G0025833) #13	Egfem1 (MGP_SPRETEiJ_G0025832) #14	Rpl22l1 (MGP_SPRETEiJ_G0025831) #15	Eif5a2 (MGP_SPRETEiJ_G0025830) #16	Slc2a2 (MGP_SPRETEiJ_G0025828) #17	Tnik (MGP_SPRETEiJ_G0025827) #18	MGP_SPRETEiJ_G0025826 #19	Pld1 (MGP_SPRETEiJ_G0025825) #20	Tmem212 (MGP_SPRETEiJ_G0025824) #21	Fndc3b (MGP_SPRETEiJ_G0025823) #22	Ghsr (MGP_SPRETEiJ_G0025822) #23	Tnfsf10 (MGP_SPRETEiJ_G0025821) #24	Nceh1 (MGP_SPRETEiJ_G0025820) #25	Ect2 (MGP_SPRETEiJ_G0025819) #26	Spata16 (MGP_SPRETEiJ_G0025818) #27	Nlgn1 (MGP_SPRETEiJ_G0025817) #28	MGP_SPRETEiJ_G0025816 #29	MGP_SPRETEiJ_G0025815 #30	Tbl1xr1 (MGP_SPRETEiJ_G0025814) #31	Agtr1b (MGP_SPRETEiJ_G0025813) #32	Cpa3 (MGP_SPRETEiJ_G0025812) #33	Cpb1 (MGP_SPRETEiJ_G0025811) #34	Gyg (MGP_SPRETEiJ_G0025810) #35	Hltf (MGP_SPRETEiJ_G0025809) #36	Hps3 (MGP_SPRETEiJ_G0025808) #37
Steppe mouse	MODERN SPECIES	3119									ENSMSIG00000022887 #15	Eif5a2 (ENSMSIG00000022876) #16	Slc2a2 (ENSMSIG00000022854) #17	ENSMSIG00000022848	Tnik (ENSMSIG00000022583) #18	Pld1 (ENSMSIG00000022498) #20	Tmem212 (ENSMSIG00000022484) #21	Fndc3b (ENSMSIG00000022129) #22	Ghsr (ENSMSIG00000022097) #23	Tnfsf10 (ENSMSIG00000022048) #24	Nceh1 (ENSMSIG00000022034) #25	Ect2 (ENSMSIG00000021918) #26	ENSMSIG00000021907	Spata16 (ENSMSIG00000021824) #27
Mouse	MODERN SPECIES	12	Samd7 (ENSMUSG00000051860) #7	Lrrc31 (ENSMUSG00000074653)	Lrriq4 (ENSMUSG00000027703) #9	Lrrc34 (ENSMUSG00000027702) #10	Mynn (ENSMUSG00000037730) #11	Actrt3 (ENSMUSG00000037737) #12	Mecom (ENSMUSG00000027684) #13	Egfem1 (ENSMUSG00000063600) #14	Gm1527 (ENSMUSG00000074655)	Rpl22l1 (ENSMUSG00000039221) #15	Eif5a2 (ENSMUSG00000050192) #16	Slc2a2 (ENSMUSG00000027690) #17	Tnik (ENSMUSG00000027692) #18	Pld1 (ENSMUSG00000027695) #20	Tmem212 (ENSMUSG00000043164) #21	Fndc3b (ENSMUSG00000039286) #22	Ghsr (ENSMUSG00000051136) #23	Tnfsf10 (ENSMUSG00000039304) #24	Nceh1 (ENSMUSG00000027698) #25	Ect2 (ENSMUSG00000027699) #26	Spata16 (ENSMUSG00000039335) #27	Nlgn1 (ENSMUSG00000063887) #28	Naaladl2 (ENSMUSG00000102758) #29	Tbl1xr1 (ENSMUSG00000027630) #31	Agtr1b (ENSMUSG00000054988) #32	Cpb1 (ENSMUSG00000011463) #34	Cpa3 (ENSMUSG00000001865) #33	Gyg (ENSMUSG00000019528) #35	Hltf (ENSMUSG00000002428) #36	Hps3 (ENSMUSG00000027615) #37	Cp (ENSMUSG00000003617)
Ryukyu mouse	MODERN SPECIES	12	Sec62 (MGP_CAROLIEiJ_G0024906)	MGP_CAROLIEiJ_G0024905 #7	Lrrc31 (MGP_CAROLIEiJ_G0024904)	Lrriq4 (MGP_CAROLIEiJ_G0024903) #9	Lrrc34 (MGP_CAROLIEiJ_G0024902) #10	Mynn (MGP_CAROLIEiJ_G0024901) #11	Actrt3 (MGP_CAROLIEiJ_G0024900) #12	Mecom (MGP_CAROLIEiJ_G0024899) #13	Egfem1 (MGP_CAROLIEiJ_G0024898) #14	Rpl22l1 (MGP_CAROLIEiJ_G0024897) #15	Eif5a2 (MGP_CAROLIEiJ_G0024896) #16	Slc2a2 (MGP_CAROLIEiJ_G0024895) #17	Tnik (MGP_CAROLIEiJ_G0024894) #18	Pld1 (MGP_CAROLIEiJ_G0024893) #20	Tmem212 (MGP_CAROLIEiJ_G0024892) #21	Fndc3b (MGP_CAROLIEiJ_G0024891) #22	Ghsr (MGP_CAROLIEiJ_G0024890) #23	Tnfsf10 (MGP_CAROLIEiJ_G0024889) #24	Nceh1 (MGP_CAROLIEiJ_G0024888) #25	MGP_CAROLIEiJ_G0024887 #26	Spata16 (MGP_CAROLIEiJ_G0024886) #27	Nlgn1 (MGP_CAROLIEiJ_G0024885) #28	Naaladl2 (MGP_CAROLIEiJ_G0024884) #29	Tbl1xr1 (MGP_CAROLIEiJ_G0024883) #31	Agtr1b (MGP_CAROLIEiJ_G0024882) #32	Cpb1 (MGP_CAROLIEiJ_G0024881) #34	Cpa3 (MGP_CAROLIEiJ_G0024880) #33	Gyg (MGP_CAROLIEiJ_G0024879) #35	Hltf (MGP_CAROLIEiJ_G0024878) #36	Hps3 (MGP_CAROLIEiJ_G0024877) #37	Cp (MGP_CAROLIEiJ_G0024876)
Shrew mouse	MODERN SPECIES	17	Sec62 (MGP_PahariEiJ_G0026351)	Samd7 (MGP_PahariEiJ_G0026350) #7	MGP_PahariEiJ_G0026349	Lrriq4 (MGP_PahariEiJ_G0026348) #9	Lrrc34 (MGP_PahariEiJ_G0026347) #10	Mynn (MGP_PahariEiJ_G0026346) #11	Actrt3 (MGP_PahariEiJ_G0026345) #12	Mecom (MGP_PahariEiJ_G0026344) #13	Egfem1 (MGP_PahariEiJ_G0026343) #14	Rpl22l1 (MGP_PahariEiJ_G0026342) #15	Eif5a2 (MGP_PahariEiJ_G0026341) #16	MGP_PahariEiJ_G0026340 #17	Tnik (MGP_PahariEiJ_G0026339) #18	Pld1 (MGP_PahariEiJ_G0026338) #19	Tmem212 (MGP_PahariEiJ_G0026337) #21	Fndc3b (MGP_PahariEiJ_G0026336) #22	Ghsr (MGP_PahariEiJ_G0026335) #23	Tnfsf10 (MGP_PahariEiJ_G0026334) #24	Nceh1 (MGP_PahariEiJ_G0026333) #25	Ect2 (MGP_PahariEiJ_G0026332) #26	Spata16 (MGP_PahariEiJ_G0026331) #27	Nlgn1 (MGP_PahariEiJ_G0026330) #28	Naaladl2 (MGP_PahariEiJ_G0026329) #29	Tbl1xr1 (MGP_PahariEiJ_G0026328) #31	Agtr1b (MGP_PahariEiJ_G0026327) #32	Cpb1 (MGP_PahariEiJ_G0026326) #34	Cpa3 (MGP_PahariEiJ_G0026325) #33	Gyg (MGP_PahariEiJ_G0026324) #35	Hltf (MGP_PahariEiJ_G0026323) #36	Hps3 (MGP_PahariEiJ_G0026322) #37	Cp (MGP_PahariEiJ_G0026321)
Rat	MODERN SPECIES	11	Lrrc31 (ENSRNOG00000027971)	Samd7 (ENSRNOG00000027995) #7	Sec62 (ENSRNOG00000009057)	Gpr160 (ENSRNOG00000009487)	Phc3 (ENSRNOG00000009491)	Prkci (ENSRNOG00000009652)	Skil (ENSRNOG00000009899)	Cldn11 (ENSRNOG00000010263)	Slc7a14 (ENSRNOG00000028097)	Rpl22l1 (ENSRNOG00000011817) #15	Eif5a2 (ENSRNOG00000011859) #16	Slc2a2 (ENSRNOG00000011875) #17	Tnik (ENSRNOG00000012422) #18	Pld1 (ENSRNOG00000028156) #19	Tmem212 (ENSRNOG00000012608) #21	Fndc3b (ENSRNOG00000024089) #22	Ghsr (ENSRNOG00000024119) #23	Tnfsf10 (ENSRNOG00000067968) #24	Nceh1 (ENSRNOG00000013313) #25	Ect2 (ENSRNOG00000024365) #26	Spata16 (ENSRNOG00000024521) #27	Nlgn1 (ENSRNOG00000032576) #28	ENSRNOG00000033028	Naaladl2 (ENSRNOG00000065021) #29	Tbl1xr1 (ENSRNOG00000011216) #31	LOC120100784 (ENSRNOG00000031378)	ENSRNOG00000070560	Agtr1b (ENSRNOG00000010640) #32	Cpb1 (ENSRNOG00000030904) #34	Cpa3 (ENSRNOG00000011181) #33	Gyg1 (ENSRNOG00000011146) #35