Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00730000111293	ENSGT00940000160075 #8	ENSGT00390000002757 #9	ENSGT00390000015520 #10	ENSGT00940000154964 #11	ENSGT00940000153497.E #12	ENSGT00940000158435 #13	ENSGT00890000139496 #14	ENSGT00940000155893.b #15	ENSGT00940000154509 #16	ENSGT00390000003738.a.b #17	ENSGT00940000155708 #18	ENSGT00950000183196.B #19	ENSGT00940000155015 #20	ENSGT00390000016029 #21	ENSGT00940000157005 #22	ENSGT01100000263484.C.b.a #23	ENSGT01070000253816.b #24	ENSGT00940000156699 #26	ENSGT00940000156299 #28	ENSGT00390000015332 #29	ENSGT00940000155789 #30	ENSGT01030000234598.a.b #31	ENSGT00860000135711	ENSGT00940000153421.a.b #33	ENSGT00950000183039.B.b.a #34	ENSGT00730000111202 #35	ENSGT00940000155531.b #36	ENSGT00910000147422	ENSGT00950000183039.B.a #37	ENSGT00940000156335
Hystricomorpha	ANCESTRAL SPECIES	6	ENSGT00940000161601 #7	ENSGT00940000160075 #8	ENSGT00390000002757.u #9	ENSGT00390000015520 #10	ENSGT00940000154964 #11	ENSGT00940000153497.E #12	ENSGT00940000158435 #13	ENSGT00890000139496 #14	ENSGT00940000155893.b #15	ENSGT00940000154509 #16	ENSGT00390000003738.a.b #17	ENSGT00940000155708 #18	ENSGT00950000183196.B #19	ENSGT00940000155015 #20	ENSGT00390000016029 #21	ENSGT00940000157005 #22	ENSGT01100000263484.C.b.a #23	ENSGT01070000253816.b #24	ENSGT00940000156699 #26	ENSGT00940000156299 #28	ENSGT00390000015332 #29	ENSGT00940000155789 #30	ENSGT01030000234598.a.b #31	ENSGT00940000153421.a.b #33	ENSGT00950000183039.B.b.a #34	ENSGT00730000111202 #35	ENSGT00940000155531.b #36	ENSGT00950000183039.B.a #37	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a
Hystricomorpha_a	ANCESTRAL SPECIES	4	ENSGT00940000161601 #7	ENSGT00940000160075 #8	ENSGT00390000002757.u #9	ENSGT00390000015520 #10	ENSGT00940000154964 #11	ENSGT00940000153497.E #12	ENSGT00940000158435 #13	ENSGT00890000139496 #14	ENSGT00940000155893.b #15	ENSGT00940000154509 #16	ENSGT00390000003738.a.b #17	ENSGT00940000155708 #18	ENSGT00950000183196.B #19	ENSGT00940000155015 #20	ENSGT00390000016029 #21	ENSGT00940000157005 #22	ENSGT01100000263484.C.b.a #23	ENSGT01070000253816.b #24	ENSGT00940000156699 #26	ENSGT00940000156299 #28	ENSGT00390000015332 #29	ENSGT00940000155789 #30	ENSGT01030000234598.a.b #31	ENSGT00940000153421.a.b #33	ENSGT00950000183039.B.b.a #34	ENSGT00730000111202 #35	ENSGT00940000155531.b #36	ENSGT00950000183039.B.a #37	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a
Hystricomorpha_b	ANCESTRAL SPECIES	9	ENSGT00940000161601 #7	ENSGT00940000160075 #8	ENSGT00390000002757.u #9	ENSGT00390000015520 #10	ENSGT00940000154964 #11	ENSGT00940000153497.E #12	ENSGT00940000158435 #13	ENSGT00890000139496 #14	ENSGT00940000155893.b #15	ENSGT00940000154509 #16	ENSGT00390000003738.a.b.n.a #17	ENSGT00940000155708 #18	ENSGT00950000183196.B #19	ENSGT00940000155015 #20	ENSGT00390000016029 #21	ENSGT00940000157005 #22	ENSGT01100000263484.C.b.a #23	ENSGT01070000253816.b #24	ENSGT00940000156699 #26	ENSGT00940000156299 #28	ENSGT00390000015332 #29	ENSGT00940000155789 #30	ENSGT01030000234598.a.b #31	ENSGT00940000153421.a.b #33	ENSGT00950000183039.B.b.a #34	ENSGT00730000111202 #35	ENSGT00940000155531.b #36	ENSGT00950000183039.B.a #37	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a
Long-tailed chinchilla	MODERN SPECIES	127	LRRIQ4 (ENSCLAG00000014708) #7	SAMD7 (ENSCLAG00000011650) #8	ENSCLAG00000010122 #9	GPR160 (ENSCLAG00000011119) #10	PHC3 (ENSCLAG00000012350) #11	PRKCI (ENSCLAG00000014828) #12	SKIL (ENSCLAG00000011070) #13	CLDN11 (ENSCLAG00000009889) #14	SLC7A14 (ENSCLAG00000010996) #15	RPL22L1 (ENSCLAG00000012186) #16	ENSCLAG00000013461 #17	SLC2A2 (ENSCLAG00000014131) #18	TNIK (ENSCLAG00000011229) #19	PLD1 (ENSCLAG00000012419) #20	TMEM212 (ENSCLAG00000016037) #21	FNDC3B (ENSCLAG00000015717) #22	GHSR (ENSCLAG00000012973) #23	TNFSF10 (ENSCLAG00000015552) #24	ENSCLAG00000017893 #25	NCEH1 (ENSCLAG00000011865) #26	ENSCLAG00000013454 #27	ECT2 (ENSCLAG00000015030) #28	SPATA16 (ENSCLAG00000016484) #29	NLGN1 (ENSCLAG00000010604) #30	NAALADL2 (ENSCLAG00000012428) #31	ENSCLAG00000018045 #32	TBL1XR1 (ENSCLAG00000013893) #33	KCNMB2 (ENSCLAG00000014319) #34	ZMAT3 (ENSCLAG00000013464) #35	PIK3CA (ENSCLAG00000015135) #36	KCNMB3 (ENSCLAG00000014741) #37
Degu	MODERN SPECIES	96	PHC3 (ENSODEG00000007882) #11	PRKCI (ENSODEG00000007927) #12	ENSODEG00000019467	SKIL (ENSODEG00000007781) #13	CLDN11 (ENSODEG00000008979) #14	SLC7A14 (ENSODEG00000008674) #15	ENSODEG00000009861	ENSODEG00000008003 #16	ENSODEG00000007731 #17	ENSODEG00000019567	SLC2A2 (ENSODEG00000008360) #18	TNIK (ENSODEG00000007936) #19	PLD1 (ENSODEG00000006929) #20	ENSODEG00000019876 ##25	TMEM212 (ENSODEG00000010772) #21	ENSODEG00000007581 #22	GHSR (ENSODEG00000007538) #23	TNFSF10 (ENSODEG00000007502) #24	NCEH1 (ENSODEG00000006949) #26	ENSODEG00000007260 #28	ENSODEG00000019421	SPATA16 (ENSODEG00000007354) #29	NLGN1 (ENSODEG00000006900) #30	ENSODEG00000006853	ENSODEG00000008026
Guinea pig	MODERN SPECIES	100	LRRIQ4 (ENSCPOG00000011649) #7	SAMD7 (ENSCPOG00000025571) #8	SEC62 (ENSCPOG00000040337) #9	GPR160 (ENSCPOG00000007388) #10	PHC3 (ENSCPOG00000005870) #11	PRKCI (ENSCPOG00000015212) #12	SKIL (ENSCPOG00000006684) #13	CLDN11 (ENSCPOG00000033278) #14	SLC7A14 (ENSCPOG00000011615) #15	ENSCPOG00000009215 #16	EIF5A2 (ENSCPOG00000012594) #17	SLC2A2 (ENSCPOG00000012055) #18	TNIK (ENSCPOG00000012060) #19	PLD1 (ENSCPOG00000010721) #20	TMEM212 (ENSCPOG00000000573) #21	FNDC3B (ENSCPOG00000011705) #22	GHSR (ENSCPOG00000014041) #23	TNFSF10 (ENSCPOG00000031635) #24
Naked mole-rat female	MODERN SPECIES	27	PHC3 (ENSHGLG00000014756) #11	PRKCI (ENSHGLG00000011160) #12	SKIL (ENSHGLG00000011598) #13	ENSHGLG00000032237	CLDN11 (ENSHGLG00000043741) #14	ENSHGLG00000037289	ENSHGLG00000049917	SLC7A14 (ENSHGLG00000012232) #15	ENSHGLG00000046725	RPL22L1 (ENSHGLG00000045881) #16	ENSHGLG00000012647 #17	SLC2A2 (ENSHGLG00000049404) #18	TNIK (ENSHGLG00000013310) #19	PLD1 (ENSHGLG00000014314) #20	TMEM212 (ENSHGLG00000014698) #21	FNDC3B (ENSHGLG00000014877) #22	GHSR (ENSHGLG00000014950) #23	TNFSF10 (ENSHGLG00000044629) #24	NCEH1 (ENSHGLG00000010683) #26	ECT2 (ENSHGLG00000011074) #28	ENSHGLG00000011562	ENSHGLG00000003841 ##27	SPATA16 (ENSHGLG00000011913) #29	ENSHGLG00000048748	NLGN1 (ENSHGLG00000013440) #30	ENSHGLG00000042892	NAALADL2 (ENSHGLG00000013839) #31	ENSHGLG00000050637	ENSHGLG00000033259	TBL1XR1 (ENSHGLG00000044077) #33	ENSHGLG00000050422
Sciuridae	ANCESTRAL SPECIES	12	ENSGT00730000111293	ENSGT00940000160075 #8	ENSGT00390000002757 #9	ENSGT00390000015520 #10	ENSGT00940000154964 #11	ENSGT00940000153497.E #12	ENSGT00940000158435 #13	ENSGT00890000139496 #14	ENSGT00940000155893.b #15	ENSGT00940000154509 #16	ENSGT00390000003738.a.b #17	ENSGT00940000155708 #18	ENSGT00950000183196.B #19	ENSGT00940000155015 #20	ENSGT00390000016029 #21	ENSGT00940000157005 #22	ENSGT01100000263484.C.b.a #23	ENSGT01020000233244	ENSGT01070000253816.b #24	ENSGT00940000156699 #26	ENSGT00940000156299 #28	ENSGT00390000015332 #29	ENSGT00940000155789 #30	ENSGT01030000234598.a.b #31	ENSGT00860000135711	ENSGT00940000153421.a.b #33	ENSGT00950000183039.B.b.a #34	ENSGT00730000111202 #35	ENSGT00940000155531.b #36	ENSGT00910000147422	ENSGT00950000183039.B.a #37
Marmotini	ANCESTRAL SPECIES	59	ENSGT00730000111293	ENSGT00940000160075 #8	ENSGT00390000002757 #9	ENSGT00390000015520 #10	ENSGT00940000154964 #11	ENSGT00940000153497.E #12	ENSGT00940000158435 #13	ENSGT00890000139496 #14	ENSGT00940000155893.b #15	ENSGT00940000154509 #16	ENSGT00390000003738.a.b.q.a #17	ENSGT00940000155708 #18	ENSGT00950000183196.B #19	ENSGT00940000155015 #20	ENSGT00390000016029 #21	ENSGT00940000157005 #22	ENSGT01100000263484.C.b.a #23	ENSGT01020000233244	ENSGT01070000253816.b #24	ENSGT00940000156699 #26	ENSGT00940000156299 #28	ENSGT00390000015332 #29	ENSGT00940000155789 #30	ENSGT01030000234598.a.b #31	ENSGT00860000135711	ENSGT00940000153421.a.b #33	ENSGT00950000183039.B.b.a #34	ENSGT00730000111202 #35	ENSGT00940000155531.b #36	ENSGT00910000147422	ENSGT00950000183039.B.a #37
Marmotini_b	ANCESTRAL SPECIES	133	ENSGT00730000111293	ENSGT00940000160075 #8	ENSGT00390000002757 #9	ENSGT00390000015520 #10	ENSGT00940000154964 #11	ENSGT00940000153497.E #12	ENSGT00940000158435 #13	ENSGT00890000139496 #14	ENSGT00940000155893.b #15	ENSGT00940000154509 #16	ENSGT00390000003738.a.b.q.a #17	ENSGT00940000155708 #18	ENSGT00950000183196.B #19	ENSGT00940000155015 #20	ENSGT00390000016029 #21	ENSGT00940000157005 #22	ENSGT01100000263484.C.b.a #23	ENSGT01020000233244	ENSGT01070000253816.b #24	ENSGT00940000156699 #26	ENSGT00940000156299.s #28
Arctic ground squirrel	MODERN SPECIES	147	SAMD7 (ENSUPAG00010021006) #8	SEC62 (ENSUPAG00010020997) #9	GPR160 (ENSUPAG00010020984) #10	PHC3 (ENSUPAG00010020799) #11	PRKCI (ENSUPAG00010020789) #12	ENSUPAG00010020782	SKIL (ENSUPAG00010020765) #13	CLDN11 (ENSUPAG00010020762) #14	SLC7A14 (ENSUPAG00010020744) #15	ENSUPAG00010020724 #16	ENSUPAG00010020720 #17	SLC2A2 (ENSUPAG00010020713) #18	TNIK (ENSUPAG00010019607) #19	PLD1 (ENSUPAG00010019510) #20	TMEM212 (ENSUPAG00010019493) #21	FNDC3B (ENSUPAG00010019380) #22	GHSR (ENSUPAG00010019371) #23	ENSUPAG00010019366	TNFSF10 (ENSUPAG00010019355) #24	NCEH1 (ENSUPAG00010019346) #26	ECT2 (ENSUPAG00010019299) #28
Squirrel	MODERN SPECIES	193	SAMD7 (ENSSTOG00000003350) #8	SEC62 (ENSSTOG00000009366) #9	ENSSTOG00000002772	PHC3 (ENSSTOG00000002796) #11	PRKCI (ENSSTOG00000002794) #12	SKIL (ENSSTOG00000008045) #13	CLDN11 (ENSSTOG00000008070) #14	ENSSTOG00000030657	SLC7A14 (ENSSTOG00000008097) #15	RPL22L1 (ENSSTOG00000022972) #16	ENSSTOG00000008130 #17	SLC2A2 (ENSSTOG00000010407) #18	TNIK (ENSSTOG00000002770) #19	PLD1 (ENSSTOG00000010180) #20	TMEM212 (ENSSTOG00000010214) #21	FNDC3B (ENSSTOG00000015567) #22	GHSR (ENSSTOG00000015577) #23	TNFSF10 (ENSSTOG00000006286) #24	NCEH1 (ENSSTOG00000006303) #26	ENSSTOG00000023909 #28
Alpin marmot	MODERN SPECIES	37	PHC3 (ENSMMMG00000006935) #11	PRKCI (ENSMMMG00000006916) #12	ENSMMMG00000006906	ENSMMMG00000006901	ENSMMMG00000006897	SKIL (ENSMMMG00000006825) #13	CLDN11 (ENSMMMG00000006819) #14	SLC7A14 (ENSMMMG00000006796) #15	ENSMMMG00000006781 #16	EIF5A2 (ENSMMMG00000006767) #17	ENSMMMG00000006749 ##27	SLC2A2 (ENSMMMG00000006743) #18	TNIK (ENSMMMG00000005292) #19	PLD1 (ENSMMMG00000005075) #20	TMEM212 (ENSMMMG00000005043) #21	FNDC3B (ENSMMMG00000004936) #22	ENSMMMG00000004926	GHSR (ENSMMMG00000004921) #23	TNFSF10 (ENSMMMG00000004911) #24	NCEH1 (ENSMMMG00000004887) #26	ENSMMMG00000004880	ECT2 (ENSMMMG00000004729) #28	SPATA16 (ENSMMMG00000004708) #29	NLGN1 (ENSMMMG00000004664) #30	ENSMMMG00000004633	ENSMMMG00000004628	NAALADL2 (ENSMMMG00000004611) #31	ENSMMMG00000004587	ENSMMMG00000004514 #33	KCNMB2 (ENSMMMG00000004486) #34	ZMAT3 (ENSMMMG00000004454) #35
Eurasian red squirrel	MODERN SPECIES	1	ENSSVLG00005013185	GPR160 (ENSSVLG00005013127) #10	PHC3 (ENSSVLG00005012992) #11	ENSSVLG00005012724 #12	ENSSVLG00005012666	SKIL (ENSSVLG00005012473) #13	CLDN11 (ENSSVLG00005012422) #14	SLC7A14 (ENSSVLG00005012335) #15	ENSSVLG00005012248 #16	EIF5A2 (ENSSVLG00005012156) #17	SLC2A2 (ENSSVLG00005012009) #18	ENSSVLG00005009676 #19	ENSSVLG00005009308	PLD1 (ENSSVLG00005009258) #20	TMEM212 (ENSSVLG00005009205) #21	FNDC3B (ENSSVLG00005009155) #22	GHSR (ENSSVLG00005009108) #23	ENSSVLG00005009074	TNFSF10 (ENSSVLG00005009030) #24	ENSSVLG00005009000	NCEH1 (ENSSVLG00005008940) #26	ECT2 (ENSSVLG00005008532) #28	SPATA16 (ENSSVLG00005008419) #29	NLGN1 (ENSSVLG00005008366) #30	ENSSVLG00005008340	NAALADL2 (ENSSVLG00005008257) #31	TBL1XR1 (ENSSVLG00005008184) #33	ENSSVLG00005008160	KCNMB2 (ENSSVLG00005008096) #34	ENSSVLG00005008059	ZMAT3 (ENSSVLG00005008037) #35