Euteleostomi	ANCESTRAL SPECIES	221						ENSGT00940000156458	ENSGT00940000164283.a	ENSGT00390000012629	ENSGT00390000004990	ENSGT00390000008783	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00390000009446	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00940000162831	ENSGT00390000002307 #26	ENSGT00940000159931 #27
Sarcopterygii	ANCESTRAL SPECIES	15	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000160494	ENSGT00390000016619.a	ENSGT00940000156472	ENSGT00390000005923	ENSGT00940000160909	ENSGT00390000015818	ENSGT00940000158361	ENSGT00950000183184.a.a	ENSGT00390000006826	ENSGT00940000159898	ENSGT00940000160767	ENSGT00940000156186	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00940000162831	ENSGT00390000002307 #26	ENSGT00940000159931 #27
Tetrapoda	ANCESTRAL SPECIES	26	ENSGT01030000234528.B.b.a.a.a	ENSGT00940000160845	ENSGT00940000157422	ENSGT00960000187237	ENSGT00940000161971	ENSGT00960000186993	ENSGT00940000156263	ENSGT00940000154786	ENSGT00940000165418	ENSGT00940000158200	ENSGT00950000182997.a.b.b.b	ENSGT00940000154409	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00940000162831	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00940000161744	ENSGT00940000160217	ENSGT00940000161232	ENSGT00940000160712	ENSGT00390000016619.b	ENSGT00940000164745.c.a	ENSGT00940000156784	ENSGT00940000158061	ENSGT00940000160876
Amniota	ANCESTRAL SPECIES	46													ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000161232	ENSGT00940000160712	ENSGT00390000016619.b	ENSGT00940000164745.c.a	ENSGT00940000156784	ENSGT00940000158061	ENSGT00940000160876	ENSGT00940000161671	ENSGT00390000004405.a
Mammalia	ANCESTRAL SPECIES	135													ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28
Theria	ANCESTRAL SPECIES	2	ENSGT00940000159521	ENSGT00940000153804.B	ENSGT00940000158666	ENSGT00940000155606.b	ENSGT00950000182837.b.a	ENSGT00940000155687	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00730000111596 #14	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Eutheria	ANCESTRAL SPECIES	1	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000159881.a.b.b ##9	ENSGT00940000159881.a.b.a ##9	ENSGT00940000163941.A	ENSGT00940000165904	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36
Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT00940000159881.a.b.b ##9	ENSGT00940000159881.a.b.a ##9	ENSGT00940000163941.A	ENSGT00940000162202.C ##12	ENSGT00940000159881.a.a.a #9	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000159881.a.a.a #9	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Primates	ANCESTRAL SPECIES	6	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000159881.a.a.a #9	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Haplorrhini	ANCESTRAL SPECIES	3	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000159881.a.a.a #9	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Simiiformes	ANCESTRAL SPECIES	4	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000159881.a.a.a #9	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Catarrhini	ANCESTRAL SPECIES	4	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000159881.a.a.a #9	ENSGT00390000014843 #10	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00910000147030	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT01050000248304	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00910000147692	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000159881.a.a.a #9	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00910000147030	ENSGT00390000002978 #16	ENSGT00950000183070.a.b.g.b.a.d #17	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT01050000248304	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00910000147692	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000159881.a.a.a #9	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT00390000002978 #16	ENSGT00950000183070.a.b.g.b.a.d #17	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.e.a #20	ENSGT00390000013208.v	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT01050000248304	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36
Vervet Monkey	MODERN SPECIES	2	LALBA (ENSCSAG00000006263) #7	OR5BS1P (ENSCSAG00000006266) #8	OR8S1 (ENSCSAG00000006270) #9	C12orf54 (ENSCSAG00000006273) #10	ENSCSAG00000006275 #11	ENSCSAG00000019252 #12	ZNF641 (ENSCSAG00000006278) #13	H1-7 (ENSCSAG00000019251) #14	ENSCSAG00000006285 #15	CCDC184 (ENSCSAG00000019250) #16	ENSCSAG00000006302 #17	ASB8 (ENSCSAG00000006304) #18	PFKM (ENSCSAG00000006315) #19	ENSCSAG00000006320 #20	ENSCSAG00000019249 #21	COL2A1 (ENSCSAG00000006460) #22	TMEM106C (ENSCSAG00000006569) #23	VDR (ENSCSAG00000006576) #24	HDAC7 (ENSCSAG00000006584) #25	SLC48A1 (ENSCSAG00000006591) #26	RAPGEF3 (ENSCSAG00000006671) #27	ENDOU (ENSCSAG00000006695) #28	RPAP3 (ENSCSAG00000006707) #29	PCED1B (ENSCSAG00000019248) #30	AMIGO2 (ENSCSAG00000019247) #31	SLC38A4 (ENSCSAG00000006718) #32	SLC38A2 (ENSCSAG00000006724) #33	SLC38A1 (ENSCSAG00000006731) #34	SCAF11 (ENSCSAG00000006741) #35	ARID2 (ENSCSAG00000006749) #36	ANO6 (ENSCSAG00000006758) #37
Cercopithecinae_a	ANCESTRAL SPECIES	7	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000159881.a.a.a #9	ENSGT00390000014843 #10	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT00390000002978 #16	ENSGT00950000183070.a.b.g.b.a.d #17	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00390000013208.v	ENSGT00940000155489.b.f.a ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT01050000248304	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36
Cercopithecinae_b	ANCESTRAL SPECIES	2	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000159881.a.a.a #9	ENSGT00390000014843 #10	ENSGT00390000003125.i.b	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00390000013208.v	ENSGT00940000155489.b.f.a ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT01050000248304	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36
Cercopithecinae_d	ANCESTRAL SPECIES	3	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00940000159881.a.a.a #9	ENSGT00390000014843 #10	ENSGT00390000003125.i.b	ENSGT00940000162121 #13	ENSGT00390000004856.w.a.a.b.a.a.b	ENSGT00940000157911.b.a	ENSGT00910000147030	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f.a ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37	ENSGT00950000183093.A.a
Drill	MODERN SPECIES	959	KANSL2 (ENSMLEG00000030435)	ENSMLEG00000033939 #7	OR8S1 (ENSMLEG00000043967) #9	C12orf54 (ENSMLEG00000013602) #10	ENSMLEG00000030489	ENSMLEG00000036523	ZNF641 (ENSMLEG00000044259) #13	ENSMLEG00000007600	ENSMLEG00000035066	ENSMLEG00000039549	ENSMLEG00000040313	CCDC184 (ENSMLEG00000004337) #16	ASB8 (ENSMLEG00000035600) #18	PFKM (ENSMLEG00000013288) #19	SENP1 (ENSMLEG00000042606) ##20	COL2A1 (ENSMLEG00000040212) #22	TMEM106C (ENSMLEG00000040987) #23	VDR (ENSMLEG00000039437) #24	HDAC7 (ENSMLEG00000030810) #25	SLC48A1 (ENSMLEG00000001439) #26	RAPGEF3 (ENSMLEG00000041624) #27	ENDOU (ENSMLEG00000042142) #28	RPAP3 (ENSMLEG00000035944) #29
Sooty mangabey	MODERN SPECIES	571	ADCY6 (ENSCATG00000031664)	TEX49 (ENSCATG00000026325)	CCNT1 (ENSCATG00000012742)	KANSL2 (ENSCATG00000039151)	LALBA (ENSCATG00000035302) #7	OR8S1 (ENSCATG00000004425) #9	C12orf54 (ENSCATG00000034097) #10	ENSCATG00000041332	ZNF641 (ENSCATG00000043835) #13	ENSCATG00000021099	ENSCATG00000038030	ENSCATG00000032527 ##17	ASB8 (ENSCATG00000030950) #18	PFKM (ENSCATG00000027401) #19	SENP1 (ENSCATG00000043133) ##20	COL2A1 (ENSCATG00000043631) #22	TMEM106C (ENSCATG00000036809) #23	VDR (ENSCATG00000028364) #24	HDAC7 (ENSCATG00000043857) #25	SLC48A1 (ENSCATG00000021181) #26	RAPGEF3 (ENSCATG00000029872) #27	ENDOU (ENSCATG00000044022) #28	RPAP3 (ENSCATG00000030195) #29	AMIGO2 (ENSCATG00000019946) #31	SLC38A4 (ENSCATG00000014279) #32	SLC38A2 (ENSCATG00000021173) #33	SLC38A1 (ENSCATG00000031471) #34	SCAF11 (ENSCATG00000032446) #35	ARID2 (ENSCATG00000040163) #36	ANO6 (ENSCATG00000032834) #37	ENSCATG00000022024
Olive baboon	MODERN SPECIES	19	CCNT1 (ENSPANG00000012633)	KANSL2 (ENSPANG00000019844)	LALBA (ENSPANG00000050965) #7	OR5BS1P (ENSPANG00000041563) #8	OR8S1 (ENSPANG00000006685) #9	C12orf54 (ENSPANG00000008134) #10	ENSPANG00000041823	ENSPANG00000041580	ZNF641 (ENSPANG00000014075) #13	H1-7 (ENSPANG00000045002) #14	CCDC184 (ENSPANG00000014422) #16	ASB8 (ENSPANG00000047762) #18	PFKM (ENSPANG00000019403) #19	ENSPANG00000039475	SENP1 (ENSPANG00000010525) ##20	COL2A1 (ENSPANG00000020674) #22	TMEM106C (ENSPANG00000044784) #23	VDR (ENSPANG00000011327) #24	ENSPANG00000009964 #25	ENSPANG00000048474	SLC48A1 (ENSPANG00000015786) #26	RAPGEF3 (ENSPANG00000038998) #27	ENSPANG00000044017 #27	ENSPANG00000045030	ENSPANG00000046041	PCED1B (ENSPANG00000044056) #30	AMIGO2 (ENSPANG00000009333) #31	ENSPANG00000037408	ENSPANG00000047410	SLC38A4 (ENSPANG00000017211) #32	ENSPANG00000043730
Macaca	ANCESTRAL SPECIES	6	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000159881.a.a.a #9	ENSGT00390000014843 #10	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT00390000002978 #16	ENSGT00950000183070.a.b.g.b.a.d #17	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00390000013208.v	ENSGT00940000155489.b.f.a ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00440000034918.q.a.a.b.b.b	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Macaca_a	ANCESTRAL SPECIES	6	ENSGT00940000155687	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000159881.a.a.a #9	ENSGT00390000014843 #10	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00390000013208.v	ENSGT00940000155489.b.f.a ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Crab-eating macaque	MODERN SPECIES	2	CCNT1 (ENSMFAG00000042457)	KANSL2 (ENSMFAG00000039042)	ENSMFAG00000050804	LALBA (ENSMFAG00000003340) #7	OR5BS1P (ENSMFAG00000060517) #8	OR8S1 (ENSMFAG00000043587) #9	ENSMFAG00000031362 #10	ENSMFAG00000049420	ENSMFAG00000042792 #13	H1-7 (ENSMFAG00000053048) #14	CCDC184 (ENSMFAG00000058649) #16	ASB8 (ENSMFAG00000002179) #18	PFKM (ENSMFAG00000037825) #19	ENSMFAG00000059157	ENSMFAG00000001564 ##20	COL2A1 (ENSMFAG00000031247) #22	TMEM106C (ENSMFAG00000036419) #23	VDR (ENSMFAG00000040856) #24	HDAC7 (ENSMFAG00000044177) #25	SLC48A1 (ENSMFAG00000038766) #26	RAPGEF3 (ENSMFAG00000034209) #27	ENDOU (ENSMFAG00000045723) #28	RPAP3 (ENSMFAG00000030749) #29	ENSMFAG00000048905	PCED1B (ENSMFAG00000060421) #30	ENSMFAG00000059864	AMIGO2 (ENSMFAG00000036236) #31	SLC38A4 (ENSMFAG00000000933) #32	SLC38A2 (ENSMFAG00000037266) #33	SLC38A1 (ENSMFAG00000009753) #34	ENSMFAG00000062309
Rhesus	MODERN SPECIES	2	ADCY6 (ENSMMUG00000006253)	TEX49 (ENSMMUG00000054025)	CCNT1 (ENSMMUG00000007629)	KANSL2 (ENSMMUG00000003877)	LALBA (ENSMMUG00000000283) #7	OR5BS1P (ENSMMUG00000059987) #8	OR8S1 (ENSMMUG00000000539) #9	ENSMMUG00000048875 #10	ZNF641 (ENSMMUG00000014484) #13	H1-7 (ENSMMUG00000051724) #14	CCDC184 (ENSMMUG00000052412) #16	ASB8 (ENSMMUG00000002048) #18	PFKM (ENSMMUG00000002045) #19	ENSMMUG00000055133	SENP1 (ENSMMUG00000020125) ##20	COL2A1 (ENSMMUG00000011444) #22	TMEM106C (ENSMMUG00000011441) #23	VDR (ENSMMUG00000006727) #24	HDAC7 (ENSMMUG00000021655) #25	SLC48A1 (ENSMMUG00000049514) #26	RAPGEF3 (ENSMMUG00000000477) #27	ENDOU (ENSMMUG00000018399) #28	RPAP3 (ENSMMUG00000007482) #29	ENSMMUG00000049854	PCED1B (ENSMMUG00000002203) #30	AMIGO2 (ENSMMUG00000012458) #31	SLC38A4 (ENSMMUG00000012331) #32	ENSMMUG00000065020	SLC38A2 (ENSMMUG00000022359) #33	SLC38A1 (ENSMMUG00000011999) #34	SCAF11 (ENSMMUG00000023791) #35
Pig-tailed macaque	MODERN SPECIES	443	PLSCR5 (ENSMNEG00000038595)	ENSMNEG00000036104	ZIC4 (ENSMNEG00000022641)	ZIC1 (ENSMNEG00000040121)	AGTR1 (ENSMNEG00000032645)	CPB1 (ENSMNEG00000040108)	CPA3 (ENSMNEG00000033180)	GYG1 (ENSMNEG00000029032)	HLTF (ENSMNEG00000032097)	HPS3 (ENSMNEG00000030748)	ENSMNEG00000036139	CP (ENSMNEG00000044426)	ENSMNEG00000029954	TM4SF18 (ENSMNEG00000036327)	ENSMNEG00000044306 ##20	COL2A1 (ENSMNEG00000034245) #22	TMEM106C (ENSMNEG00000032962) #23	VDR (ENSMNEG00000029469) #24	HDAC7 (ENSMNEG00000038434) #25	SLC48A1 (ENSMNEG00000010205) #26	RAPGEF3 (ENSMNEG00000007257) #27	ENDOU (ENSMNEG00000038748) #28	RPAP3 (ENSMNEG00000028621) #29	ENSMNEG00000039988	ENSMNEG00000031900	AMIGO2 (ENSMNEG00000024121) #31	SLC38A4 (ENSMNEG00000038441) #32	SLC38A2 (ENSMNEG00000029727) #33	SLC38A1 (ENSMNEG00000034047) #34	SCAF11 (ENSMNEG00000028520) #35	ARID2 (ENSMNEG00000033155) #36
Rhinopithecus	ANCESTRAL SPECIES	4	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00940000159881.a.a.a #9	ENSGT00390000014843 #10	ENSGT00390000007552.f.x.z	ENSGT00940000162121 #13	ENSGT01100000263574.a	ENSGT00910000147030	ENSGT00390000002978 #16	ENSGT00950000183070.a.b.g.b.a.d #17	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00910000147692	ENSGT00940000160716 #34
Black snub-nosed monkey	MODERN SPECIES	1629									ENSRBIG00000038245	OR10AD1 (ENSRBIG00000028936)	ENSRBIG00000032502	CCDC184 (ENSRBIG00000020435) #16	ASB8 (ENSRBIG00000043401) #18	ENSRBIG00000038885 #19	SENP1 (ENSRBIG00000041356) ##20	COL2A1 (ENSRBIG00000008860) #22	TMEM106C (ENSRBIG00000039284) #23	VDR (ENSRBIG00000032268) #24	HDAC7 (ENSRBIG00000041373) #25	SLC48A1 (ENSRBIG00000037103) #26	ENSRBIG00000033157	ENDOU (ENSRBIG00000017516) #28	RPAP3 (ENSRBIG00000032745) #29
Golden snub-nosed monkey	MODERN SPECIES	2905	CCNT1 (ENSRROG00000044470)	KANSL2 (ENSRROG00000028358)	LALBA (ENSRROG00000030100) #7	OR8S1 (ENSRROG00000042102) #9	C12orf54 (ENSRROG00000040880) #10	ENSRROG00000045033	ZNF641 (ENSRROG00000028995) #13	OR10AD1 (ENSRROG00000036758)	ENSRROG00000035893	CCDC184 (ENSRROG00000000771) #16	ENSRROG00000037143 #17	ASB8 (ENSRROG00000033794) #18	PFKM (ENSRROG00000035567) #19	ENSRROG00000033054	SENP1 (ENSRROG00000041591) ##20	COL2A1 (ENSRROG00000020874) #22	TMEM106C (ENSRROG00000021591) #23	VDR (ENSRROG00000038196) #24	HDAC7 (ENSRROG00000006265) #25	SLC48A1 (ENSRROG00000036870) #26	RAPGEF3 (ENSRROG00000031521) #27	ENDOU (ENSRROG00000037068) #28	RPAP3 (ENSRROG00000028195) #29	AMIGO2 (ENSRROG00000016845) #31
Hominoidea	ANCESTRAL SPECIES	5	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000159881.a.a.a #9	ENSGT00390000014843 #10	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00910000147030	ENSGT00390000002978 #16	ENSGT00950000183070.a.b.g.b.a.c.a ##17	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT01050000248304	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00910000147692	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35
Hominidae	ANCESTRAL SPECIES	4	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000159881.a.a.a #9	ENSGT00390000014843 #10	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00910000147030	ENSGT00390000002978 #16	ENSGT00950000183070.a.b.g.b.a.c.a ##17	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00390000013208.y.b	ENSGT00940000155489.b.f ##20	ENSGT00390000013208.z	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT01050000248304	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00390000006304	ENSGT00940000155486 #33	ENSGT00910000147692	ENSGT00940000160716 #34
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	5	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000159881.a.a.a #9	ENSGT00390000014843 #10	ENSGT00950000182907.a.b.b.b.tb.b #11	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00910000147030	ENSGT00390000002978 #16	ENSGT00950000183070.a.b.g.b.a.c.a ##17	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f.d ##20	ENSGT00390000013208.z	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00390000006304	ENSGT00940000155486 #33	ENSGT00910000147692	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35
Homo/Pan group	ANCESTRAL SPECIES	6	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000159881.a.a.a #9	ENSGT00390000014843 #10	ENSGT00950000182907.a.b.b.b.tb.b #11	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00910000147030	ENSGT00390000002978 #16	ENSGT00950000183070.a.b.g.b.a.c.a ##17	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f.d ##20	ENSGT00390000013208.z	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00390000006304	ENSGT00940000155486 #33	ENSGT00910000147692	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35
Pan	ANCESTRAL SPECIES	4	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00940000159881.a.a.a #9	ENSGT00950000182907.a.b.b.b.tb.b #11	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00910000147030	ENSGT00390000002978 #16	ENSGT00950000183070.a.b.g.b.a.c.a ##17	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f.d ##20	ENSGT00390000013208.z	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00950000182922.a.a.a.a.v.a.a	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00390000006304	ENSGT00940000155486 #33	ENSGT00910000147692	ENSGT00940000160716 #34
Chimpanzee	MODERN SPECIES	3	CCNT1 (ENSPTRG00000004883)	KANSL2 (ENSPTRG00000004882)	LALBA (ENSPTRG00000004881) #7	OR8S1 (ENSPTRG00000023679) #9	ENSPTRG00000004879 #11	ZNF641 (ENSPTRG00000045476) #13	H1-7 (ENSPTRG00000004877) #14	ENSPTRG00000029704	ENSPTRG00000045723	CCDC184 (ENSPTRG00000029702) #16	ENSPTRG00000048129 ##17	ASB8 (ENSPTRG00000004875) #18	PFKM (ENSPTRG00000004874) #19	SENP1 (ENSPTRG00000004872) ##20	ENSPTRG00000050379	COL2A1 (ENSPTRG00000004871) #22	TMEM106C (ENSPTRG00000004870) #23	VDR (ENSPTRG00000042814) #24	HDAC7 (ENSPTRG00000004868) #25	SLC48A1 (ENSPTRG00000049903) #26	RAPGEF3 (ENSPTRG00000004866) #27	ENDOU (ENSPTRG00000004863) #28	RPAP3 (ENSPTRG00000004861) #29	ENSPTRG00000050788	PCED1B (ENSPTRG00000004860) #30	AMIGO2 (ENSPTRG00000048648) #31	SLC38A4 (ENSPTRG00000004858) #32	ENSPTRG00000049927	SLC38A2 (ENSPTRG00000004856) #33	SLC38A1 (ENSPTRG00000004855) #34	SCAF11 (ENSPTRG00000004854) #35
Bonobo	MODERN SPECIES	3	TEX49 (ENSPPAG00000036148)	CCNT1 (ENSPPAG00000032804)	ENSPPAG00000026612	LALBA (ENSPPAG00000030532) #7	OR8S1 (ENSPPAG00000037092) #9	ZNF641 (ENSPPAG00000043802) #13	H1-7 (ENSPPAG00000012971) #14	OR10AD1 (ENSPPAG00000006971)	ENSPPAG00000031405	CCDC184 (ENSPPAG00000001304) #16	ENSPPAG00000031624 ##17	ASB8 (ENSPPAG00000035275) #18	PFKM (ENSPPAG00000037410) #19	SENP1 (ENSPPAG00000044033) ##20	ENSPPAG00000036796	ENSPPAG00000027130 #22	TMEM106C (ENSPPAG00000030564) #23	VDR (ENSPPAG00000037181) #24	HDAC7 (ENSPPAG00000041982) #25	ENSPPAG00000040249 #26	RAPGEF3 (ENSPPAG00000043182) #27	ENDOU (ENSPPAG00000036852) #28	RPAP3 (ENSPPAG00000033476) #29	ENSPPAG00000025908	PCED1B (ENSPPAG00000026608) #30	AMIGO2 (ENSPPAG00000017693) #31	SLC38A4 (ENSPPAG00000031819) #32	ENSPPAG00000007804	SLC38A2 (ENSPPAG00000030800) #33	ENSPPAG00000040430	SLC38A1 (ENSPPAG00000027005) #34
Human	MODERN SPECIES	3	TEX49 (ENSG00000257987)	CCNT1 (ENSG00000129315)	KANSL2 (ENSG00000139620)	LALBA (ENSG00000167531) #7	OR5BS1P (ENSG00000198678) #8	OR8S1 (ENSG00000284723) #9	C12orf54 (ENSG00000177627) #10	ANP32D (ENSG00000139223) #11	ZNF641 (ENSG00000167528) #13	H1-7 (ENSG00000187166) #14	OR10AD1 (ENSG00000172640)	CCDC184 (ENSG00000177875) #16	ASB8 (ENSG00000177981) #18	PFKM (ENSG00000152556) #19	SENP1 (ENSG00000079387) ##20	COL2A1 (ENSG00000139219) #22	TMEM106C (ENSG00000134291) #23	VDR (ENSG00000111424) #24	HDAC7 (ENSG00000061273) #25	SLC48A1 (ENSG00000211584) #26	RAPGEF3 (ENSG00000079337) #27	ENDOU (ENSG00000111405) #28	RPAP3 (ENSG00000005175) #29	PCED1B (ENSG00000179715) #30	AMIGO2 (ENSG00000139211) #31	SLC38A4 (ENSG00000139209) #32	SLC38A2 (ENSG00000134294) #33	SLC38A1 (ENSG00000111371) #34	SCAF11 (ENSG00000139218) #35	ARID2 (ENSG00000189079) #36	ANO6 (ENSG00000177119) #37
Gorilla	MODERN SPECIES	3	CCNT1 (ENSGGOG00000013082)	ENSGGOG00000013077	LALBA (ENSGGOG00000025788) #7	OR8S1 (ENSGGOG00000003022) #9	C12orf54 (ENSGGOG00000016663) #10	ZNF641 (ENSGGOG00000013643) #13	H1-7 (ENSGGOG00000025202) #14	OR10AD1 (ENSGGOG00000008264)	ENSGGOG00000023950	CCDC184 (ENSGGOG00000026078) #16	ENSGGOG00000041361 ##17	ASB8 (ENSGGOG00000006472) #18	PFKM (ENSGGOG00000006461) #19	SENP1 (ENSGGOG00000004325) ##20	ENSGGOG00000001106	COL2A1 (ENSGGOG00000004310) #22	TMEM106C (ENSGGOG00000004302) #23	VDR (ENSGGOG00000016473) #24	HDAC7 (ENSGGOG00000016461) #25	ENSGGOG00000043812 #26	RAPGEF3 (ENSGGOG00000016430) #27	ENDOU (ENSGGOG00000016423) #28	RPAP3 (ENSGGOG00000024558) #29	PCED1B (ENSGGOG00000013022) #30	AMIGO2 (ENSGGOG00000038050) #31	SLC38A4 (ENSGGOG00000012966) #32	ENSGGOG00000025336	SLC38A2 (ENSGGOG00000001344) #33	ENSGGOG00000037868	SLC38A1 (ENSGGOG00000000005) #34	SCAF11 (ENSGGOG00000014885) #35
Orangutan	MODERN SPECIES	3	TEX49 (ENSPPYG00000032235)	CCNT1 (ENSPPYG00000036637)	KANSL2 (ENSPPYG00000004464)	LALBA (ENSPPYG00000004463) #7	OR5BS1P (ENSPPYG00000004462) #8	ENSPPYG00000004461 #9	C12orf54 (ENSPPYG00000004460) #10	ANP32D (ENSPPYG00000004459) #11	ZNF641 (ENSPPYG00000036320) #13	CCDC184 (ENSPPYG00000004455) #16	ENSPPYG00000038285	ASB8 (ENSPPYG00000038698) #18	PFKM (ENSPPYG00000004453) #19	ENSPPYG00000031101	SENP1 (ENSPPYG00000004452) ##20	COL2A1 (ENSPPYG00000004451) #22	TMEM106C (ENSPPYG00000004450) #23	VDR (ENSPPYG00000004448) #24	ENSPPYG00000032145	HDAC7 (ENSPPYG00000004446) #25	ENSPPYG00000034890 #26	RAPGEF3 (ENSPPYG00000038555) #27	ENDOU (ENSPPYG00000004442) #28	RPAP3 (ENSPPYG00000004441) #29	ENSPPYG00000031758	PCED1B (ENSPPYG00000004440) #30	SLC38A4 (ENSPPYG00000004438) #32	ENSPPYG00000004437	SLC38A2 (ENSPPYG00000004436) #33	SLC38A1 (ENSPPYG00000004435) #34	SCAF11 (ENSPPYG00000004434) #35
Gibbon	MODERN SPECIES	23	DDX23 (ENSNLEG00000017864)	CACNB3 (ENSNLEG00000017866)	ADCY6 (ENSNLEG00000017868)	ENSNLEG00000034433	CCNT1 (ENSNLEG00000017873)	ENSNLEG00000017874	LALBA (ENSNLEG00000017877) #7	ZNF641 (ENSNLEG00000017881) #13	ENSNLEG00000017883	ENSNLEG00000017884	CCDC184 (ENSNLEG00000019275) #16	ENSNLEG00000028267 ##17	ASB8 (ENSNLEG00000017885) #18	PFKM (ENSNLEG00000017887) #19	SENP1 (ENSNLEG00000017891) ##20	COL2A1 (ENSNLEG00000017893) #22	TMEM106C (ENSNLEG00000017898) #23	VDR (ENSNLEG00000017900) #24	HDAC7 (ENSNLEG00000017902) #25	SLC48A1 (ENSNLEG00000017904) #26	RAPGEF3 (ENSNLEG00000017905) #27	ENDOU (ENSNLEG00000017907) #28	RPAP3 (ENSNLEG00000017909) #29	PCED1B (ENSNLEG00000005075) #30	AMIGO2 (ENSNLEG00000033325) #31	PLSCR4 (ENSNLEG00000005048)	PLOD2 (ENSNLEG00000005034)	ENSNLEG00000033610	ENSNLEG00000027728	DIPK2A (ENSNLEG00000005030)	SLC9A9 (ENSNLEG00000004981)
Platyrrhini	ANCESTRAL SPECIES	44											ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Cebidae	ANCESTRAL SPECIES	2	ENSGT00390000011980.a	ENSGT00940000153908.a	ENSGT00940000161146	ENSGT00940000159982	ENSGT00940000159950	ENSGT00950000183119.b	ENSGT00940000155728.f.a.a	ENSGT00510000048519	ENSGT00940000156628	ENSGT01080000257336.b.e.b.a.a	ENSGT01080000257336.b.e.b.a.b.a.e.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Cebidae_a	ANCESTRAL SPECIES	5	ENSGT00940000153908.a	ENSGT00940000161146	ENSGT00940000159982	ENSGT00940000159950	ENSGT00950000183119.b	ENSGT00940000155728.f.a.a	ENSGT00510000048519	ENSGT00940000158921.h	ENSGT00940000156628	ENSGT01080000257336.b.e.b.a.a	ENSGT01080000257336.b.e.b.a.b.a.e.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Bolivian squirrel monkey	MODERN SPECIES	187												CCDC184 (ENSSBOG00000016554) #16	ASB8 (ENSSBOG00000011994) #18	PFKM (ENSSBOG00000030719) #19	SENP1 (ENSSBOG00000026125) ##20	COL2A1 (ENSSBOG00000034975) #22	TMEM106C (ENSSBOG00000025241) #23	VDR (ENSSBOG00000021289) #24	HDAC7 (ENSSBOG00000029712) #25	SLC48A1 (ENSSBOG00000023581) #26	RAPGEF3 (ENSSBOG00000028988) #27	ENDOU (ENSSBOG00000034410) #28	RPAP3 (ENSSBOG00000027611) #29	PCED1B (ENSSBOG00000029092) #30	AMIGO2 (ENSSBOG00000005479) #31	SLC38A4 (ENSSBOG00000031640) #32	ENSSBOG00000021908	ENSSBOG00000036405	SLC38A2 (ENSSBOG00000028246) #33	SLC38A1 (ENSSBOG00000025476) #34	SCAF11 (ENSSBOG00000030831) #35
Capuchin	MODERN SPECIES	2	RERGL (ENSCCAG00000024319)	PIK3C2G (ENSCCAG00000033314)	PLCZ1 (ENSCCAG00000019981)	CAPZA3 (ENSCCAG00000001778)	PLEKHA5 (ENSCCAG00000027711)	AEBP2 (ENSCCAG00000021890)	ENSCCAG00000035643	PDE3A (ENSCCAG00000026837)	ENSCCAG00000030961	SLCO1C1 (ENSCCAG00000034748)	SLCO1B3 (ENSCCAG00000034973)	CCDC184 (ENSCCAG00000017226) #16	ASB8 (ENSCCAG00000035163) #18	PFKM (ENSCCAG00000026385) #19	SENP1 (ENSCCAG00000036881) ##20	COL2A1 (ENSCCAG00000036418) #22	TMEM106C (ENSCCAG00000020884) #23	VDR (ENSCCAG00000037149) #24	HDAC7 (ENSCCAG00000035250) #25	SLC48A1 (ENSCCAG00000021348) #26	RAPGEF3 (ENSCCAG00000023046) #27	ENDOU (ENSCCAG00000034144) #28	RPAP3 (ENSCCAG00000025153) #29	AMIGO2 (ENSCCAG00000020409) #31	SLC38A4 (ENSCCAG00000029655) #32	SLC38A2 (ENSCCAG00000018922) #33	SLC38A1 (ENSCCAG00000019617) #34	SCAF11 (ENSCCAG00000030539) #35	ARID2 (ENSCCAG00000029546) #36	ANO6 (ENSCCAG00000028730) #37	DBX2 (ENSCCAG00000030302)
Marmoset	MODERN SPECIES	21	SLC15A5 (ENSCJAG00000021591)	MGST1 (ENSCJAG00000061905)	LMO3 (ENSCJAG00000021589)	RERGL (ENSCJAG00000039368)	PIK3C2G (ENSCJAG00000007208)	PLCZ1 (ENSCJAG00000007242)	PLEKHA5 (ENSCJAG00000001320)	AEBP2 (ENSCJAG00000001342)	PDE3A (ENSCJAG00000012237)	SLCO1C1 (ENSCJAG00000012242)	SLCO1B3 (ENSCJAG00000012282)	ENSCJAG00000079358 #16	ASB8 (ENSCJAG00000073495) #18	PFKM (ENSCJAG00000085813) #19	SENP1 (ENSCJAG00000015180) ##20	COL2A1 (ENSCJAG00000015054) #22	ENSCJAG00000015040	VDR (ENSCJAG00000015018) #24	HDAC7 (ENSCJAG00000014979) #25	SLC48A1 (ENSCJAG00000014975) #26	RAPGEF3 (ENSCJAG00000014874) #27	ENSCJAG00000012819 #28
Mas night monkey	MODERN SPECIES	997											OR10AD1 (ENSANAG00000035739)	CCDC184 (ENSANAG00000014439) #16	ASB8 (ENSANAG00000037107) #18	PFKM (ENSANAG00000027931) #19	SENP1 (ENSANAG00000022189) ##20	COL2A1 (ENSANAG00000000277) #22	TMEM106C (ENSANAG00000024004) #23	VDR (ENSANAG00000028434) #24	HDAC7 (ENSANAG00000027544) #25	SLC48A1 (ENSANAG00000029553) #26	RAPGEF3 (ENSANAG00000022364) #27	ENDOU (ENSANAG00000038259) #28	RPAP3 (ENSANAG00000023596) #29	PCED1B (ENSANAG00000024364) #30	AMIGO2 (ENSANAG00000003392) #31	SLC38A4 (ENSANAG00000026601) #32	SLC38A2 (ENSANAG00000022032) #33	ENSANAG00000037911	SLC38A1 (ENSANAG00000026526) #34	SCAF11 (ENSANAG00000033295) #35	ARID2 (ENSANAG00000035486) #36
Tarsier	MODERN SPECIES	6391													ASB8 (ENSTSYG00000031496) #18	PFKM (ENSTSYG00000005683) #19	SENP1 (ENSTSYG00000005669) ##20	COL2A1 (ENSTSYG00000001806) #22	ENSTSYG00000001184 #23
Strepsirrhini	ANCESTRAL SPECIES	3	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000159881.a.a.a #9	ENSGT00390000014843 #10	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138.m #36	ENSGT00940000158969 #37
Lemuriformes	ANCESTRAL SPECIES	1	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000159881.a.a.a #9	ENSGT00390000014843 #10	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138.m #36	ENSGT00940000158969 #37
Mouse lemur	MODERN SPECIES	29	FKBP11 (ENSMICG00000017545)	RND1 (ENSMICG00000034995)	DDX23 (ENSMICG00000017541)	CACNB3 (ENSMICG00000017540)	ADCY6 (ENSMICG00000011825)	TEX49 (ENSMICG00000046126)	CCNT1 (ENSMICG00000045745)	KANSL2 (ENSMICG00000005369)	LALBA (ENSMICG00000027875) #7	C12orf54 (ENSMICG00000044033) #10	ZNF641 (ENSMICG00000007360) #13	ENSMICG00000043548	ASB8 (ENSMICG00000036562) #18	ENSMICG00000009077 #19	SENP1 (ENSMICG00000009067) ##20	COL2A1 (ENSMICG00000009035) #22	TMEM106C (ENSMICG00000001808) #23	VDR (ENSMICG00000009017) #24	HDAC7 (ENSMICG00000008981) #25	SLC48A1 (ENSMICG00000040477) #26	RAPGEF3 (ENSMICG00000008955) #27	ENDOU (ENSMICG00000008940) #28	RPAP3 (ENSMICG00000008923) #29	PCED1B (ENSMICG00000033652) #30	AMIGO2 (ENSMICG00000016826) #31	SLC38A4 (ENSMICG00000037271) #32	SLC38A2 (ENSMICG00000012909) #33	SLC38A1 (ENSMICG00000012891) #34	SCAF11 (ENSMICG00000032882) #35	ENSMICG00000027443	ARID2 (ENSMICG00000001487) #36
Lemuriformes_a	ANCESTRAL SPECIES	8	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000159881.a.a.a #9	ENSGT00390000014843 #10	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138.m #36	ENSGT00940000158969 #37
Greater bamboo lemur	MODERN SPECIES	157	CCNT1 (ENSPSMG00000006248)	KANSL2 (ENSPSMG00000006262)	LALBA (ENSPSMG00000006288) #7	OR5BS1P (ENSPSMG00000006293) #8	OR8S1 (ENSPSMG00000006307) #9	C12orf54 (ENSPSMG00000006313) #10	ENSPSMG00000006325 ##12	ZNF641 (ENSPSMG00000006343) #13	ENSPSMG00000006354 #14	OR10AD1 (ENSPSMG00000006355)	CCDC184 (ENSPSMG00000006359) #16	ASB8 (ENSPSMG00000006381) #18	PFKM (ENSPSMG00000006723) #19	SENP1 (ENSPSMG00000007328) ##20	ENSPSMG00000007348	COL2A1 (ENSPSMG00000007410) #22	TMEM106C (ENSPSMG00000007452) #23	VDR (ENSPSMG00000007475) #24	HDAC7 (ENSPSMG00000007768) #25	SLC48A1 (ENSPSMG00000007842) #26	RAPGEF3 (ENSPSMG00000008231) #27	ENDOU (ENSPSMG00000008548) #28	RPAP3 (ENSPSMG00000008653) #29	PCED1B (ENSPSMG00000008684) #30	AMIGO2 (ENSPSMG00000008690) #31	SLC38A4 (ENSPSMG00000008717) #32	SLC38A2 (ENSPSMG00000008822) #33	SLC38A1 (ENSPSMG00000008950) #34	SCAF11 (ENSPSMG00000009136) #35	ARID2 (ENSPSMG00000009214) #36
Coquerels sifaka	MODERN SPECIES	139									LALBA (ENSPCOG00000018633) #7	C12orf54 (ENSPCOG00000019382) #10	ZNF641 (ENSPCOG00000001947) #13	OR10AD1 (ENSPCOG00000015450)	ASB8 (ENSPCOG00000023868) #18	PFKM (ENSPCOG00000023069) #19	SENP1 (ENSPCOG00000019819) ##20	COL2A1 (ENSPCOG00000020574) #22	TMEM106C (ENSPCOG00000004592) #23	VDR (ENSPCOG00000018013) #24	HDAC7 (ENSPCOG00000006648) #25	SLC48A1 (ENSPCOG00000016515) #26	RAPGEF3 (ENSPCOG00000014176) #27	ENDOU (ENSPCOG00000017245) #28	RPAP3 (ENSPCOG00000025666) #29	PCED1B (ENSPCOG00000015507) #30	AMIGO2 (ENSPCOG00000026569) #31	SLC38A4 (ENSPCOG00000019237) #32	SLC38A2 (ENSPCOG00000012829) #33	SLC38A1 (ENSPCOG00000013491) #34	SCAF11 (ENSPCOG00000018985) #35	ARID2 (ENSPCOG00000009815) #36	ANO6 (ENSPCOG00000018108) #37
Bushbaby	MODERN SPECIES	185	CACNB3 (ENSOGAG00000028602)	ADCY6 (ENSOGAG00000016801)	CCNT1 (ENSOGAG00000016794)	KANSL2 (ENSOGAG00000033595)	LALBA (ENSOGAG00000028012) #7	OR8S1 (ENSOGAG00000005676) #9	C12orf54 (ENSOGAG00000005674) #10	ENSOGAG00000034537 ##12	ZNF641 (ENSOGAG00000005519) #13	H1-7 (ENSOGAG00000008945) #14	OR10AD1 (ENSOGAG00000005517)	CCDC184 (ENSOGAG00000030121) #16	ASB8 (ENSOGAG00000005509) #18	PFKM (ENSOGAG00000005501) #19	SENP1 (ENSOGAG00000005497) ##20	COL2A1 (ENSOGAG00000005487) #22	TMEM106C (ENSOGAG00000005484) #23	VDR (ENSOGAG00000005480) #24	HDAC7 (ENSOGAG00000005471) #25	SLC48A1 (ENSOGAG00000032164) #26	RAPGEF3 (ENSOGAG00000005462) #27	ENDOU (ENSOGAG00000005458) #28	RPAP3 (ENSOGAG00000005454) #29	PCED1B (ENSOGAG00000003352) #30	AMIGO2 (ENSOGAG00000003853) #31	SLC38A4 (ENSOGAG00000007943) #32	SLC38A2 (ENSOGAG00000006475) #33	SLC38A1 (ENSOGAG00000006469) #34	SCAF11 (ENSOGAG00000026319) #35	ENSOGAG00000024978	ARID2 (ENSOGAG00000024418) #36
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00940000165147	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Tree shrew	MODERN SPECIES	5707												ENSTBEG00000006066	CCDC184 (ENSTBEG00000005958) #16	PFKM (ENSTBEG00000004870) #19	SENP1 (ENSTBEG00000004213) ##20	COL2A1 (ENSTBEG00000002633) #22	ENSTBEG00000002589
Glires	ANCESTRAL SPECIES	4	ENSGT00940000165147	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Lagomorpha	ANCESTRAL SPECIES	309											ENSGT00940000162121 #13	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000155473 #24
Rabbit	MODERN SPECIES	681										ENSOCUG00000026566	ZNF641 (ENSOCUG00000005451) #13	ENSOCUG00000031603 #16	ASB8 (ENSOCUG00000017455) #18	PFKM (ENSOCUG00000017445) #19	SENP1 (ENSOCUG00000017434) ##20	COL2A1 (ENSOCUG00000013629) #22	VDR (ENSOCUG00000027507) #24
Pika	MODERN SPECIES	1620												ENSOPRG00000014776 #13	ASB8 (ENSOPRG00000014764) #18	PFKM (ENSOPRG00000014719) #19	SENP1 (ENSOPRG00000014693) ##20	COL2A1 (ENSOPRG00000014627) #22	ENSOPRG00000014613 #24
Rodentia	ANCESTRAL SPECIES	5	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162202.C ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000162388.B	ENSGT00940000159881.a.a.b ##9	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162202.C ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Sciuridae	ANCESTRAL SPECIES	15	ENSGT00940000165147	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000162388.B	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162202.C ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Marmotini	ANCESTRAL SPECIES	19	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000162388.B	ENSGT00940000159881.a.b.a ##9	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162202.C ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a.g	ENSGT01100000263574.a.h	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Marmotini_b	ANCESTRAL SPECIES	11	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000162388.B	ENSGT00940000159881.a.b.a ##9	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162202.C ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a.g	ENSGT01100000263574.a.h	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Arctic ground squirrel	MODERN SPECIES	232				ENSUPAG00010002386	ENSUPAG00010002391 ##9	ENSUPAG00010002396 #12	ENSUPAG00010002403 ##12	ENSUPAG00010002409 ##12	ZNF641 (ENSUPAG00010002416) #13	H1-7 (ENSUPAG00010002437) #14	OR10AD1 (ENSUPAG00010002446)	CCDC184 (ENSUPAG00010002458) #16	ASB8 (ENSUPAG00010002462) #18	PFKM (ENSUPAG00010002472) #19	SENP1 (ENSUPAG00010002512) ##20	COL2A1 (ENSUPAG00010002564) #22	TMEM106C (ENSUPAG00010002722) #23	VDR (ENSUPAG00010002773) #24	HDAC7 (ENSUPAG00010002786) #25	SLC48A1 (ENSUPAG00010003035) #26	RAPGEF3 (ENSUPAG00010003042) #27	ENDOU (ENSUPAG00010003317) #28	RPAP3 (ENSUPAG00010003351) #29	PCED1B (ENSUPAG00010003361) #30	AMIGO2 (ENSUPAG00010003366) #31	SLC38A4 (ENSUPAG00010003369) #32	SLC38A2 (ENSUPAG00010003447) #33	SLC38A1 (ENSUPAG00010003457) #34	SCAF11 (ENSUPAG00010003501) #35	ARID2 (ENSUPAG00010003534) #36	ANO6 (ENSUPAG00010003581) #37
Squirrel	MODERN SPECIES	112	TEX49 (ENSSTOG00000004134)	CCNT1 (ENSSTOG00000021508)	KANSL2 (ENSSTOG00000004118)	ENSSTOG00000019743	LALBA (ENSSTOG00000033863) #7	ENSSTOG00000032648	ENSSTOG00000033401 ##9	ENSSTOG00000005852	ENSSTOG00000033341 ##12	ZNF641 (ENSSTOG00000001970) #13	OR10AD1 (ENSSTOG00000001963)	CCDC184 (ENSSTOG00000001957) #16	ASB8 (ENSSTOG00000024076) #18	PFKM (ENSSTOG00000001938) #19	SENP1 (ENSSTOG00000001924) ##20	COL2A1 (ENSSTOG00000001893) #22	ENSSTOG00000033063	VDR (ENSSTOG00000026741) #24	HDAC7 (ENSSTOG00000001863) #25	SLC48A1 (ENSSTOG00000027173) #26	RAPGEF3 (ENSSTOG00000000974) #27	ENSSTOG00000033662	ENDOU (ENSSTOG00000000959) #28	RPAP3 (ENSSTOG00000000949) #29	ENSSTOG00000033592 #30	AMIGO2 (ENSSTOG00000024156) #31	SLC38A4 (ENSSTOG00000010271) #32	SLC38A2 (ENSSTOG00000016307) #33	SLC38A1 (ENSSTOG00000016301) #34	SCAF11 (ENSSTOG00000004902) #35	ARID2 (ENSSTOG00000008936) #36
Alpin marmot	MODERN SPECIES	34	LALBA (ENSMMMG00000022893) #7	OR5BS1P (ENSMMMG00000022891) #8	ENSMMMG00000022889	ENSMMMG00000022886 ##9	ENSMMMG00000022885 #12	ENSMMMG00000022881 ##12	ENSMMMG00000022878 ##12	ZNF641 (ENSMMMG00000022873) #13	H1-7 (ENSMMMG00000022871) #14	ENSMMMG00000022868	ENSMMMG00000022866	CCDC184 (ENSMMMG00000022863) #16	ASB8 (ENSMMMG00000022857) #18	PFKM (ENSMMMG00000022833) #19	SENP1 (ENSMMMG00000022823) ##20	COL2A1 (ENSMMMG00000022770) #22	TMEM106C (ENSMMMG00000022764) #23	VDR (ENSMMMG00000022758) #24	HDAC7 (ENSMMMG00000022728) #25	SLC48A1 (ENSMMMG00000022726) #26	RAPGEF3 (ENSMMMG00000022694) #27	ENDOU (ENSMMMG00000022689) #28	RPAP3 (ENSMMMG00000022685) #29	PCED1B (ENSMMMG00000022679) #30	ENSMMMG00000022677	AMIGO2 (ENSMMMG00000022674) #31	SLC38A4 (ENSMMMG00000022665) #32	SLC38A2 (ENSMMMG00000022659) #33	SLC38A1 (ENSMMMG00000022650) #34	SCAF11 (ENSMMMG00000022640) #35	ARID2 (ENSMMMG00000022637) #36
Eurasian red squirrel	MODERN SPECIES	14	CCNT1 (ENSSVLG00005011525)	KANSL2 (ENSSVLG00005011410)	ENSSVLG00005011395	ENSSVLG00005011295	LALBA (ENSSVLG00005011187) #7	OR5BS1P (ENSSVLG00005011139) #8	C12orf54 (ENSSVLG00005011007) #10	ENSSVLG00005010951 #12	ZNF641 (ENSSVLG00005010861) #13	H1-7 (ENSSVLG00005010817) #14	OR10AD1 (ENSSVLG00005010756)	CCDC184 (ENSSVLG00005010675) #16	ASB8 (ENSSVLG00005010618) #18	PFKM (ENSSVLG00005010346) #19	SENP1 (ENSSVLG00005010219) ##20	COL2A1 (ENSSVLG00005009560) #22	TMEM106C (ENSSVLG00005009433) #23	ENSSVLG00005009403	VDR (ENSSVLG00005009383) #24	HDAC7 (ENSSVLG00005008826) #25	SLC48A1 (ENSSVLG00005008734) #26	RAPGEF3 (ENSSVLG00005008443) #27	ENDOU (ENSSVLG00005008365) #28	RPAP3 (ENSSVLG00005008306) #29	PCED1B (ENSSVLG00005008259) #30	AMIGO2 (ENSSVLG00005008248) #31	SLC38A4 (ENSSVLG00005008149) #32	SLC38A2 (ENSSVLG00005007998) #33	SLC38A1 (ENSSVLG00005007955) #34	SCAF11 (ENSSVLG00005007909) #35	ARID2 (ENSSVLG00005007791) #36
Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00940000165147	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000162388.B	ENSGT00940000159881.a.a.b ##9	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Naked mole-rat female	MODERN SPECIES	8	ENSHGLG00000020586 ##9	ENSHGLG00000020517	ENSHGLG00000047106	ENSHGLG00000036300 #12	ENSHGLG00000034108 ##12	ENSHGLG00000047797 ##12	ZNF641 (ENSHGLG00000048585) #13	ENSHGLG00000033180 #14	ENSHGLG00000046091	ENSHGLG00000037629	OR10AD1 (ENSHGLG00000045918)	CCDC184 (ENSHGLG00000035592) #16	ASB8 (ENSHGLG00000042429) #18	PFKM (ENSHGLG00000013968) #19	SENP1 (ENSHGLG00000006533) ##20	COL2A1 (ENSHGLG00000017846) #22	TMEM106C (ENSHGLG00000017877) #23	VDR (ENSHGLG00000007266) #24	HDAC7 (ENSHGLG00000007344) #25	ENSHGLG00000007669 #26	RAPGEF3 (ENSHGLG00000008298) #27	ENSHGLG00000010083 #28	ENSHGLG00000007537 #29	ENSHGLG00000006143	ENSHGLG00000041288	PCED1B (ENSHGLG00000041863) #30	AMIGO2 (ENSHGLG00000007945) #31	SLC38A4 (ENSHGLG00000009281) #32	ENSHGLG00000042041	ENSHGLG00000037591	SLC38A2 (ENSHGLG00000011224) #33
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT00940000165147	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000162388.B	ENSGT00940000159881.a.a.b ##9	ENSGT00940000164920	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Guinea pig	MODERN SPECIES	9	Lalba (ENSCPOG00000027342) #7	ENSCPOG00000033889 #8	ENSCPOG00000000012 ##9	ENSCPOG00000013910	ENSCPOG00000039913 #8	ENSCPOG00000040584	ENSCPOG00000012475 #12	ENSCPOG00000036505 ##12	ZNF641 (ENSCPOG00000002770) #13	ENSCPOG00000012386	ENSCPOG00000030096	CCDC184 (ENSCPOG00000008369) #16	ASB8 (ENSCPOG00000030353) #18	PFKM (ENSCPOG00000008351) #19	SENP1 (ENSCPOG00000008340) ##20	COL2A1 (ENSCPOG00000000832) #22	TMEM106C (ENSCPOG00000008335) #23	VDR (ENSCPOG00000036166) #24	HDAC7 (ENSCPOG00000006013) #25	SLC48A1 (ENSCPOG00000025631) #26	RAPGEF3 (ENSCPOG00000006002) #27	ENDOU (ENSCPOG00000005999) #28	RPAP3 (ENSCPOG00000002785) #29	AMIGO2 (ENSCPOG00000030831) #31	SLC38A4 (ENSCPOG00000010106) #32	SLC38A2 (ENSCPOG00000003746) #33	SLC38A1 (ENSCPOG00000005301) #34	SCAF11 (ENSCPOG00000005084) #35	ARID2 (ENSCPOG00000035312) #36	ANO6 (ENSCPOG00000013577) #37	DBX2 (ENSCPOG00000011069)
Hystricomorpha_b	ANCESTRAL SPECIES	78	ENSGT00940000155687	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808.c	ENSGT00940000161726 #7	ENSGT00940000164920	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Long-tailed chinchilla	MODERN SPECIES	207	ADCY6 (ENSCLAG00000003898)	TEX49 (ENSCLAG00000003509)	CCNT1 (ENSCLAG00000003430)	ENSCLAG00000003022	LALBA (ENSCLAG00000002878) #7	ENSCLAG00000017542	C12orf54 (ENSCLAG00000002462) #10	ENSCLAG00000017498 #12	ENSCLAG00000002661 ##12	ZNF641 (ENSCLAG00000002291) #13	OR10AD1 (ENSCLAG00000002006)	CCDC184 (ENSCLAG00000017612) #16	ASB8 (ENSCLAG00000003759) #18	PFKM (ENSCLAG00000003014) #19	SENP1 (ENSCLAG00000015346) ##20	COL2A1 (ENSCLAG00000011781) #22	TMEM106C (ENSCLAG00000008066) #23	VDR (ENSCLAG00000007173) #24	HDAC7 (ENSCLAG00000003217) #25	SLC48A1 (ENSCLAG00000002169) #26	RAPGEF3 (ENSCLAG00000001881) #27	ENDOU (ENSCLAG00000001806) #28	ENSCLAG00000001789	ENSCLAG00000003956	RPAP3 (ENSCLAG00000003507) #29	PCED1B (ENSCLAG00000017610) #30	AMIGO2 (ENSCLAG00000003032) #31	SLC38A4 (ENSCLAG00000002757) #32	SLC38A2 (ENSCLAG00000002651) #33	SLC38A1 (ENSCLAG00000002175) #34	SCAF11 (ENSCLAG00000002050) #35
Degu	MODERN SPECIES	141	ADCY6 (ENSODEG00000003474)	ENSODEG00000003445	TEX49 (ENSODEG00000003431)	ENSODEG00000003425	ENSODEG00000003381	LALBA (ENSODEG00000003342) #7	ENSODEG00000003309	ENSODEG00000003293 #12	ZNF641 (ENSODEG00000003266) #13	ENSODEG00000003244	ENSODEG00000003231	CCDC184 (ENSODEG00000019270) #16	ASB8 (ENSODEG00000004323) #18	PFKM (ENSODEG00000004315) #19	SENP1 (ENSODEG00000004260) ##20	COL2A1 (ENSODEG00000004221) #22	TMEM106C (ENSODEG00000004196) #23	ENSODEG00000004180 #24	HDAC7 (ENSODEG00000003964) #25	SLC48A1 (ENSODEG00000003853) #26	RAPGEF3 (ENSODEG00000003613) #27	ENDOU (ENSODEG00000003517) #28	RPAP3 (ENSODEG00000003489) #29	PCED1B (ENSODEG00000003479) #30	ENSODEG00000018996	AMIGO2 (ENSODEG00000018958) #31	ENSODEG00000003462 #33	ENSODEG00000003450	SLC38A2 (ENSODEG00000003379) #33	SLC38A1 (ENSODEG00000003269) #34	SCAF11 (ENSODEG00000003223) #35
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000164920	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162202.C ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000164920	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162202.C ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00900000143510	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36
Muroidea	ANCESTRAL SPECIES	31	ENSGT00940000163803 #8	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000164920	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162202.C ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a.f.b	ENSGT01100000263574.a.f.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00900000143510	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36
Muroidea_A	ANCESTRAL SPECIES	9	ENSGT00940000163803 #8	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000164920	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162202.C ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a.f.b	ENSGT01100000263574.a.f.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Cricetidae	ANCESTRAL SPECIES	10	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162202.C ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a.f.b	ENSGT01100000263574.a.f.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000164920	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a.f.b	ENSGT01100000263574.a.f.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Chinese hamster chok1gshd	MODERN SPECIES	1	Or8s8 (ENSCGRG00001010259)	Or8s10 (ENSCGRG00001009319)	Or8s2 (ENSCGRG00001008762) #12	Or8s5 (ENSCGRG00001007209) ##12	Zfp641 (ENSCGRG00001008450) #13	H1f7 (ENSCGRG00001006632) #14	ENSCGRG00001001784	ENSCGRG00001009005	ENSCGRG00001008716	ENSCGRG00001004363	Ccdc184 (ENSCGRG00001009478) #16	ENSCGRG00001001830	Asb8 (ENSCGRG00001010162) #18	Pfkm (ENSCGRG00001000911) #19	Senp1 (ENSCGRG00001003916) ##20	Col2a1 (ENSCGRG00001000766) #22	Tmem106c (ENSCGRG00001001872) #23	Vdr (ENSCGRG00001003356) #24	Hdac7 (ENSCGRG00001023917) #25	Slc48a1 (ENSCGRG00001012997) #26	Rapgef3 (ENSCGRG00001008173) #27	Endou (ENSCGRG00001001419) #28	Rpap3 (ENSCGRG00001010868) #29	Pced1b (ENSCGRG00001009722) #30	Amigo2 (ENSCGRG00001009389) #31	ENSCGRG00001000597 #33	Slc38a2 (ENSCGRG00001001349) #33	Slc38a1 (ENSCGRG00001013047) #34	Scaf11 (ENSCGRG00001000868) #35	Arid2 (ENSCGRG00001004106) #36	ENSCGRG00001023780
Golden Hamster	MODERN SPECIES	626	Ccnt1 (ENSMAUG00000015960)	Kansl2 (ENSMAUG00000015668)	Lalba (ENSMAUG00000013490) #7	ENSMAUG00000012783	Or8s2 (ENSMAUG00000015201) #12	Or8s16 (ENSMAUG00000011283) ##9	Zfp641 (ENSMAUG00000010993) #13	H1f7 (ENSMAUG00000010839) #14	ENSMAUG00000014007	ENSMAUG00000019216	Ccdc184 (ENSMAUG00000010780) #16	Asb8 (ENSMAUG00000019139) #18	Pfkm (ENSMAUG00000016492) #19	ENSMAUG00000015838	ENSMAUG00000015983 ##20	Col2a1 (ENSMAUG00000019899) #22	Tmem106c (ENSMAUG00000017478) #23	Vdr (ENSMAUG00000015419) #24	Hdac7 (ENSMAUG00000020243) #25	Slc48a1 (ENSMAUG00000019302) #26	Rapgef3 (ENSMAUG00000018637) #27	Endou (ENSMAUG00000013605) #28	Rpap3 (ENSMAUG00000018381) #29	Amigo2 (ENSMAUG00000010784) #31	Slc38a4 (ENSMAUG00000010661) #32	Slc38a2 (ENSMAUG00000009909) #33	Slc38a1 (ENSMAUG00000009292) #34	ENSMAUG00000010698	ENSMAUG00000010427	Scaf11 (ENSMAUG00000016564) #35	Arid2 (ENSMAUG00000010801) #36
Cricetidae_B	ANCESTRAL SPECIES	6	ENSGT00940000165147	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162202.C ##12	ENSGT00940000162121 #13	ENSGT01100000263574.a.f.b	ENSGT01100000263574.a.f.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Prairie vole	MODERN SPECIES	2	Adcy6 (ENSMOCG00000013100)	Tex49 (ENSMOCG00000022816)	Ccnt1 (ENSMOCG00000012712)	Kansl2 (ENSMOCG00000010801)	Lalba (ENSMOCG00000018652) #7	ENSMOCG00000009420	ENSMOCG00000017621 #14	Zfp641 (ENSMOCG00000019174) #13	ENSMOCG00000001245	ENSMOCG00000001175	Ccdc184 (ENSMOCG00000003788) #16	Asb8 (ENSMOCG00000017776) #18	Pfkm (ENSMOCG00000021333) #19	ENSMOCG00000015383	ENSMOCG00000002706 ##20	Col2a1 (ENSMOCG00000014833) #22	Tmem106c (ENSMOCG00000016714) #23	ENSMOCG00000013472 #24	Hdac7 (ENSMOCG00000019731) #25	Slc48a1 (ENSMOCG00000013448) #26	Rapgef3 (ENSMOCG00000002335) #27	Endou (ENSMOCG00000015012) #28	ENSMOCG00000005623	Rpap3 (ENSMOCG00000021033) #29	Pced1b (ENSMOCG00000005496) #30	Amigo2 (ENSMOCG00000013021) #31	Slc38a4 (ENSMOCG00000015247) #32	Slc38a2 (ENSMOCG00000003601) #33	Slc38a1 (ENSMOCG00000006739) #34	Scaf11 (ENSMOCG00000000678) #35	ENSMOCG00000019972 #36
Northern American deer mouse	MODERN SPECIES	12	ENSPEMG00000029296 #8	Or8s8 (ENSPEMG00000030973)	Or8s10 (ENSPEMG00000027490)	ENSPEMG00000028993	Or8s2 (ENSPEMG00000026284) #12	Or8s5 (ENSPEMG00000026513) ##12	ENSPEMG00000012906 ##12	Zfp641 (ENSPEMG00000026282) #13	ENSPEMG00000030364	ENSPEMG00000028880	ENSPEMG00000026188	Ccdc184 (ENSPEMG00000014959) #16	Asb8 (ENSPEMG00000026668) #18	Pfkm (ENSPEMG00000009521) #19	Senp1 (ENSPEMG00000030376) ##20	Col2a1 (ENSPEMG00000012994) #22	Tmem106c (ENSPEMG00000003606) #23	Vdr (ENSPEMG00000026662) #24	Hdac7 (ENSPEMG00000008893) #25	Slc48a1 (ENSPEMG00000026517) #26	Rapgef3 (ENSPEMG00000013140) #27	Endou (ENSPEMG00000000039) #28	Rpap3 (ENSPEMG00000017686) #29	Pced1b (ENSPEMG00000017062) #30	Amigo2 (ENSPEMG00000014410) #31	Slc38a4 (ENSPEMG00000012063) #32	Slc38a2 (ENSPEMG00000016717) #33	ENSPEMG00000027302 #34	ENSPEMG00000030307	Arid2 (ENSPEMG00000014806) #36	ENSPEMG00000030605
Murinae	ANCESTRAL SPECIES	10	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000164920	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162202.C ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a.f.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Mus	ANCESTRAL SPECIES	11	ENSGT00940000163803 #8	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000164920	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a.f.a.f	ENSGT01100000263574.a.f.a.e.a	ENSGT01100000263574.a.f.a.e.b	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Mus_A	ANCESTRAL SPECIES	13	ENSGT00940000163803 #8	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000164920	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a.f.a.e.b.a.a	ENSGT01100000263574.a.f.a.f	ENSGT01100000263574.a.f.a.e.b.a.b	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749.c #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Mus_B	ANCESTRAL SPECIES	12	ENSGT00940000163803 #8	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000164920	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000159881.b ##9	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a.f.a.f	ENSGT01100000263574.a.f.a.e.b.a.b	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749.c #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Mus_C	ANCESTRAL SPECIES	17	ENSGT00940000163803 #8	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000164920	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000159881.b ##9	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a.f.a.f	ENSGT01100000263574.a.f.a.e.b.a.b	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749.c #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Steppe mouse	MODERN SPECIES	3092	Or11m3 (ENSMSIG00000000513)	Lalba (ENSMSIG00000000500) #7	ENSMSIG00000000476 #8	Or8s8 (ENSMSIG00000000461)	Or8s2 (ENSMSIG00000000448) #12	Or8s5 (ENSMSIG00000000437) ##12	ENSMSIG00000000424 ##9	ENSMSIG00000000412 ##9	Zfp641 (ENSMSIG00000000347) #13	H1f7 (ENSMSIG00000000314) #14	Or10ad1b (ENSMSIG00000000298)	Ccdc184 (ENSMSIG00000000285) #16	Asb8 (ENSMSIG00000000221) #18	Pfkm (ENSMSIG00000000111) #19	Senp1 (ENSMSIG00000030788) ##20	Col2a1 (ENSMSIG00000030745) #22	Tmem106c (ENSMSIG00000030742) #23
spretus	MODERN SPECIES	6	Lalba (MGP_SPRETEiJ_G0021130) #7	Or8s8 (MGP_SPRETEiJ_G0021129)	Or8s10 (MGP_SPRETEiJ_G0021128)	MGP_SPRETEiJ_G0021127	Or8s2 (MGP_SPRETEiJ_G0021126) #12	Or8s5 (MGP_SPRETEiJ_G0021125) ##12	MGP_SPRETEiJ_G0021124 ##9	Zfp641 (MGP_SPRETEiJ_G0021123) #13	H1f7 (MGP_SPRETEiJ_G0021122) #14	MGP_SPRETEiJ_G0021121	MGP_SPRETEiJ_G0021120	Ccdc184 (MGP_SPRETEiJ_G0021119) #16	Asb8 (MGP_SPRETEiJ_G0021118) #18	Pfkm (MGP_SPRETEiJ_G0021117) #19	Senp1 (MGP_SPRETEiJ_G0021116) ##20	Col2a1 (MGP_SPRETEiJ_G0021115) #22	Tmem106c (MGP_SPRETEiJ_G0021114) #23	Vdr (MGP_SPRETEiJ_G0021113) #24	Hdac7 (MGP_SPRETEiJ_G0021112) #25	Slc48a1 (MGP_SPRETEiJ_G0021111) #26	Rapgef3 (MGP_SPRETEiJ_G0021110) #27	MGP_SPRETEiJ_G0021109 #28	Rpap3 (MGP_SPRETEiJ_G0021108) #29	Pced1b (MGP_SPRETEiJ_G0021107) #30	Amigo2 (MGP_SPRETEiJ_G0021106) #31	Slc38a4 (MGP_SPRETEiJ_G0021105) #32	MGP_SPRETEiJ_G0021104	Slc38a2 (MGP_SPRETEiJ_G0021103) #33	Slc38a1 (MGP_SPRETEiJ_G0021102) #34	Scaf11 (MGP_SPRETEiJ_G0021101) #35	Arid2 (MGP_SPRETEiJ_G0021100) #36
Mouse	MODERN SPECIES	6	Or8s8 (ENSMUSG00000032987)	Or8s10 (ENSMUSG00000063780)	Or8s2 (ENSMUSG00000056184) #12	Or8s5 (ENSMUSG00000051793) ##12	Or8s16 (ENSMUSG00000062037) ##9	Zfp641 (ENSMUSG00000022987) #13	H1f7 (ENSMUSG00000048077) #14	Or10ad1b (ENSMUSG00000059460)	Or10ad1 (ENSMUSG00000090129)	Gm44579 (ENSMUSG00000108748)	Or10ad1c (ENSMUSG00000075427)	Ccdc184 (ENSMUSG00000029875) #16	Asb8 (ENSMUSG00000048175) #18	Pfkm (ENSMUSG00000033065) #19	Senp1 (ENSMUSG00000033075) ##20	Col2a1 (ENSMUSG00000022483) #22	Tmem106c (ENSMUSG00000052369) #23	Vdr (ENSMUSG00000022479) #24	Hdac7 (ENSMUSG00000022475) #25	Slc48a1 (ENSMUSG00000081534) #26	Rapgef3 (ENSMUSG00000022469) #27	Endou (ENSMUSG00000022468) #28	Rpap3 (ENSMUSG00000022466) #29	Pced1b (ENSMUSG00000044250) #30	Amigo2 (ENSMUSG00000048218) #31	Slc38a4 (ENSMUSG00000022464) #32	Slc38a2 (ENSMUSG00000022462) #33	Slc38a1 (ENSMUSG00000023169) #34	Scaf11 (ENSMUSG00000033228) #35	Arid2 (ENSMUSG00000033237) #36	Ano6 (ENSMUSG00000064210) #37
Ryukyu mouse	MODERN SPECIES	6	Or11m3 (MGP_CAROLIEiJ_G0020234)	Lalba (MGP_CAROLIEiJ_G0020233) #7	Or8s8 (MGP_CAROLIEiJ_G0020232)	Or8s10 (MGP_CAROLIEiJ_G0020231)	MGP_CAROLIEiJ_G0020230	Or8s2 (MGP_CAROLIEiJ_G0020229) #12	Or8s5 (MGP_CAROLIEiJ_G0020228) ##12	Zfp641 (MGP_CAROLIEiJ_G0020227) #13	H1f7 (MGP_CAROLIEiJ_G0020226) #14	MGP_CAROLIEiJ_G0020225	MGP_CAROLIEiJ_G0020224	Ccdc184 (MGP_CAROLIEiJ_G0020223) #16	Asb8 (MGP_CAROLIEiJ_G0020222) #18	Pfkm (MGP_CAROLIEiJ_G0020221) #19	Senp1 (MGP_CAROLIEiJ_G0020220) ##20	Col2a1 (MGP_CAROLIEiJ_G0020219) #22	Tmem106c (MGP_CAROLIEiJ_G0020218) #23	Vdr (MGP_CAROLIEiJ_G0020217) #24	Hdac7 (MGP_CAROLIEiJ_G0020216) #25	Slc48a1 (MGP_CAROLIEiJ_G0020215) #26	Rapgef3 (MGP_CAROLIEiJ_G0020214) #27	MGP_CAROLIEiJ_G0020213 #28	Rpap3 (MGP_CAROLIEiJ_G0020212) #29	Pced1b (MGP_CAROLIEiJ_G0020211) #30	Amigo2 (MGP_CAROLIEiJ_G0020210) #31	Slc38a4 (MGP_CAROLIEiJ_G0020209) #32	MGP_CAROLIEiJ_G0020208	Slc38a2 (MGP_CAROLIEiJ_G0020207) #33	Slc38a1 (MGP_CAROLIEiJ_G0020206) #34	Scaf11 (MGP_CAROLIEiJ_G0020205) #35	Arid2 (MGP_CAROLIEiJ_G0020204) #36
Shrew mouse	MODERN SPECIES	8	Or11m3 (MGP_PahariEiJ_G0020237)	Lalba (MGP_PahariEiJ_G0020236) #7	Or8s8 (MGP_PahariEiJ_G0020235)	Or8s10 (MGP_PahariEiJ_G0020234)	MGP_PahariEiJ_G0020233	Or8s2 (MGP_PahariEiJ_G0020232) #12	Or8s5 (MGP_PahariEiJ_G0020231) ##12	Zfp641 (MGP_PahariEiJ_G0020230) #13	H1f7 (MGP_PahariEiJ_G0020229) #14	MGP_PahariEiJ_G0020228	MGP_PahariEiJ_G0020227	Ccdc184 (MGP_PahariEiJ_G0020226) #16	Asb8 (MGP_PahariEiJ_G0020225) #18	Pfkm (MGP_PahariEiJ_G0020224) #19	Senp1 (MGP_PahariEiJ_G0020223) ##20	Col2a1 (MGP_PahariEiJ_G0020222) #22	Tmem106c (MGP_PahariEiJ_G0020221) #23	Vdr (MGP_PahariEiJ_G0020220) #24	Hdac7 (MGP_PahariEiJ_G0020219) #25	Slc48a1 (MGP_PahariEiJ_G0020218) #26	Rapgef3 (MGP_PahariEiJ_G0020217) #27	Endou (MGP_PahariEiJ_G0020216) #28	Rpap3 (MGP_PahariEiJ_G0020215) #29	Pced1b (MGP_PahariEiJ_G0020214) #30	Amigo2 (MGP_PahariEiJ_G0020213) #31	Slc38a4 (MGP_PahariEiJ_G0020212) #32	Slc38a2 (MGP_PahariEiJ_G0020211) #33	Slc38a1 (MGP_PahariEiJ_G0020210) #34	Scaf11 (MGP_PahariEiJ_G0020209) #35	Arid2 (MGP_PahariEiJ_G0020208) #36	MGP_PahariEiJ_G0020207
Rat	MODERN SPECIES	17	ENSRNOG00000062462 #8	Or8s8 (ENSRNOG00000070632)	Or8s10 (ENSRNOG00000067109)	Or8s2 (ENSRNOG00000033022) #12	Or8s5 (ENSRNOG00000064461) ##12	Or8s16 (ENSRNOG00000067164) ##12	Zfp641 (ENSRNOG00000032447) #13	H1f7 (ENSRNOG00000029545) #14	Olr1877 (ENSRNOG00000070612)	Olfr287 (ENSRNOG00000066134)	Or10ad1 (ENSRNOG00000064488)	Ccdc184 (ENSRNOG00000021945) #16	Asb8 (ENSRNOG00000010099) #18	Pfkm (ENSRNOG00000057988) #19	Senp1 (ENSRNOG00000022260) ##20	Col2a1 (ENSRNOG00000058560) #22	Tmem106c (ENSRNOG00000053269) #23	Vdr (ENSRNOG00000054420) #24	Hdac7 (ENSRNOG00000055597) #25	Slc48a1 (ENSRNOG00000053196) #26	Rapgef3 (ENSRNOG00000059961) #27	Endou (ENSRNOG00000056446) #28	Rpap3 (ENSRNOG00000053405) #29	RGD1565798 (ENSRNOG00000002475)	Pced1b (ENSRNOG00000022807) #30	Amigo2 (ENSRNOG00000007032) #31	Slc38a4 (ENSRNOG00000006653) #32	Slc38a2 (ENSRNOG00000006305) #33	Slc38a1 (ENSRNOG00000005291) #34	RGD1564963 (ENSRNOG00000069806)	Scaf11 (ENSRNOG00000005263) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	1138										ENSNGAG00000011812	ENSNGAG00000017567	Ccdc184 (ENSNGAG00000007436) #16	Asb8 (ENSNGAG00000018172) #18	Pfkm (ENSNGAG00000020307) #19	Senp1 (ENSNGAG00000021029) ##20	Col2a1 (ENSNGAG00000003216) #22	ENSNGAG00000017065	ENSNGAG00000011996 #24	Hdac7 (ENSNGAG00000017210) #25	Slc48a1 (ENSNGAG00000013864) #26	Rapgef3 (ENSNGAG00000021251) #27	Endou (ENSNGAG00000019900) #28	Rpap3 (ENSNGAG00000021591) #29	Amigo2 (ENSNGAG00000001744) #31	Slc38a4 (ENSNGAG00000006968) #32	ENSNGAG00000017653	ENSNGAG00000018530 #33	Slc38a1 (ENSNGAG00000019998) #34	Scaf11 (ENSNGAG00000001164) #35	ENSNGAG00000011742 #36	ENSNGAG00000007967 #36
Lesser Egyptian jerboa	MODERN SPECIES	157	Adcy6 (ENSJJAG00000016023)	Tex49 (ENSJJAG00000014955)	Ccnt1 (ENSJJAG00000014633)	Kansl2 (ENSJJAG00000012644)	ENSJJAG00000013730	Lalba (ENSJJAG00000011329) #7	ENSJJAG00000003638	ENSJJAG00000001609 ##12	Zfp641 (ENSJJAG00000023912) #13	ENSJJAG00000014189	ENSJJAG00000023686	Ccdc184 (ENSJJAG00000014181) #16	ENSJJAG00000023643 #18	Pfkm (ENSJJAG00000021525) #19	Senp1 (ENSJJAG00000015040) ##20	Col2a1 (ENSJJAG00000019255) #22	ENSJJAG00000015566	ENSJJAG00000013784 #24	Hdac7 (ENSJJAG00000021127) #25	Slc48a1 (ENSJJAG00000008709) #26	ENSJJAG00000019771 #27	Endou (ENSJJAG00000019156) #28	Rpap3 (ENSJJAG00000018688) #29	Amigo2 (ENSJJAG00000018293) #31	Slc38a4 (ENSJJAG00000015534) #32	ENSJJAG00000014336	Slc38a2 (ENSJJAG00000013665) #33	Slc38a1 (ENSJJAG00000013537) #34	ENSJJAG00000012055	Scaf11 (ENSJJAG00000009595) #35	ENSJJAG00000003064 #36
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	326	Nme1 (ENSDORG00000029493)	Spag9 (ENSDORG00000005649)	Tob1 (ENSDORG00000013844)	Wfikkn2 (ENSDORG00000027958)	Luc7l3 (ENSDORG00000001260)	Ankrd40 (ENSDORG00000026320)	Abcc3 (ENSDORG00000004963)	Cacna1g (ENSDORG00000009130)	Spata20 (ENSDORG00000009128)	Epn3 (ENSDORG00000009127)	Rsad1 (ENSDORG00000000145)	Acsf2 (ENSDORG00000000142)	Lrrc59 (ENSDORG00000030092)	Mrpl27 (ENSDORG00000001026)	Xylt2 (ENSDORG00000001024)	ENSDORG00000013502 #22	Sgca (ENSDORG00000013499)	ENSDORG00000013497	Samd14 (ENSDORG00000013495)	Pdk2 (ENSDORG00000013494)	Itga3 (ENSDORG00000013491)	Dlx4 (ENSDORG00000007200)	Kat7 (ENSDORG00000014746)	Fam117a (ENSDORG00000014743)	Slc35b1 (ENSDORG00000014742)	Spop (ENSDORG00000001680)	Nxph3 (ENSDORG00000001674)	Ngfr (ENSDORG00000004457)	ENSDORG00000004455 ##17	Zfp652 (ENSDORG00000028287)	Phospho1 (ENSDORG00000002249)
Kangaroo rat	MODERN SPECIES	361	Cacnb3 (ENSDORG00000012657)	Adcy6 (ENSDORG00000005171)	Tex49 (ENSDORG00000023756)	Ccnt1 (ENSDORG00000002854)	Kansl2 (ENSDORG00000001180)	Lalba (ENSDORG00000009838) #7	ENSDORG00000002609	ENSDORG00000025213 ##12	Zfp641 (ENSDORG00000011810) #13	ENSDORG00000027881	ENSDORG00000027511	Ccdc184 (ENSDORG00000000096) #16	Asb8 (ENSDORG00000027268) #18	Pfkm (ENSDORG00000000094) #19	Senp1 (ENSDORG00000000092) ##20	Col2a1 (ENSDORG00000012020) #22	Tmem106c (ENSDORG00000012018) #23	ENSDORG00000027162 #24	Hdac7 (ENSDORG00000016267) #25	Slc48a1 (ENSDORG00000026104) #26	ENSDORG00000016264 #27	Endou (ENSDORG00000016263) #28	Rpap3 (ENSDORG00000006069) #29	Pced1b (ENSDORG00000028185) #30	Amigo2 (ENSDORG00000026278) #31	Slc38a4 (ENSDORG00000003163) #32	Slc38a2 (ENSDORG00000007910) #33	Slc38a1 (ENSDORG00000028155) #34	Scaf11 (ENSDORG00000002262) #35	Arid2 (ENSDORG00000012273) #36	Ano6 (ENSDORG00000011423) #37
Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT00940000159881.a.b.b ##9	ENSGT00940000159881.a.b.a ##9	ENSGT00940000163941.A	ENSGT00940000162202.C ##12	ENSGT00940000159881.a.a.a #9	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36
Eulipotyphla	ANCESTRAL SPECIES	2522																ENSGT00940000155224 #22	ENSGT00940000167360
Hedgehog	MODERN SPECIES	3092																COL2A1 (ENSEEUG00000010662) #22	ENSEEUG00000010634
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT00940000162202.C ##12	ENSGT00940000159881.a.a.a #9	ENSGT00940000166925	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000165904.b	ENSGT00940000165904.a	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT00940000159881.a.a.a #9	ENSGT00940000166925	ENSGT00980000199472	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000165904.b	ENSGT00940000165904.a	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000162388.B	ENSGT00940000162388.C.b	ENSGT00940000159881.a.a.a #9	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36
Chiroptera	ANCESTRAL SPECIES	4	ENSGT00940000155687	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000165147	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000162202.A #12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Microchiroptera	ANCESTRAL SPECIES	2	ENSGT00950000182837.b.a	ENSGT00940000155687	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000165147	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000162202.A #12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Greater horseshoe bat	MODERN SPECIES	1	CACNB3 (ENSRFEG00010008761)	ADCY6 (ENSRFEG00010008619)	TEX49 (ENSRFEG00010008549)	CCNT1 (ENSRFEG00010008442)	ENSRFEG00010008258	ENSRFEG00010008162	LALBA (ENSRFEG00010008073) #7	OR5BS1P (ENSRFEG00010008042) #8	ENSRFEG00010008030 #12	ZNF641 (ENSRFEG00010007923) #13	ENSRFEG00010007885 #14	CCDC184 (ENSRFEG00010007804) #16	ASB8 (ENSRFEG00010007697) #18	PFKM (ENSRFEG00010007343) #19	SENP1 (ENSRFEG00010007260) ##20	COL2A1 (ENSRFEG00010006489) #22	TMEM106C (ENSRFEG00010006321) #23	VDR (ENSRFEG00010006264) #24	HDAC7 (ENSRFEG00010005995) #25	SLC48A1 (ENSRFEG00010005847) #26	RAPGEF3 (ENSRFEG00010005730) #27	ENDOU (ENSRFEG00010005631) #28	RPAP3 (ENSRFEG00010005486) #29	PCED1B (ENSRFEG00010005446) #30	AMIGO2 (ENSRFEG00010005431) #31	SLC38A4 (ENSRFEG00010005352) #32	ENSRFEG00010005286 #33	SLC38A1 (ENSRFEG00010005255) #34	SCAF11 (ENSRFEG00010005211) #35	ARID2 (ENSRFEG00010005163) #36	ANO6 (ENSRFEG00010005078) #37
Microbat	MODERN SPECIES	1028	KANSL2 (ENSMLUG00000012761)	ENSMLUG00000028552	ENSMLUG00000028621	ENSMLUG00000027828	LALBA (ENSMLUG00000010895) #7	OR5BS1P (ENSMLUG00000010889) #8	ENSMLUG00000022240 #12	ENSMLUG00000027444	ZNF641 (ENSMLUG00000003695) #13	ENSMLUG00000003687 #14	ENSMLUG00000023658	CCDC184 (ENSMLUG00000017738) #16	ASB8 (ENSMLUG00000017737) #18	PFKM (ENSMLUG00000017736) #19	SENP1 (ENSMLUG00000006588) ##20	COL2A1 (ENSMLUG00000017735) #22	TMEM106C (ENSMLUG00000017734) #23	VDR (ENSMLUG00000000912) #24	HDAC7 (ENSMLUG00000000900) #25	SLC48A1 (ENSMLUG00000024033) #26	RAPGEF3 (ENSMLUG00000011062) #27	ENDOU (ENSMLUG00000011000) #28	ENSMLUG00000029111 #29	PCED1B (ENSMLUG00000010247) #30	AMIGO2 (ENSMLUG00000009909) #31	SLC38A4 (ENSMLUG00000002500) #32	SLC38A2 (ENSMLUG00000005954) #33	SLC38A1 (ENSMLUG00000004812) #34	SCAF11 (ENSMLUG00000015435) #35	ARID2 (ENSMLUG00000006908) #36	ANO6 (ENSMLUG00000007076) #37
Megabat	MODERN SPECIES	7573																COL2A1 (ENSPVAG00000014348) #22	TMEM106C (ENSPVAG00000014352) #23
Equus	ANCESTRAL SPECIES	16	ENSGT00940000162388.B	ENSGT00940000162388.C.b	ENSGT00940000166925.b	ENSGT00940000159881.a.a.a #9	ENSGT00980000199472	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36
Donkey	MODERN SPECIES	14	ENSEASG00005023526	OR8S1 (ENSEASG00005028324) #9	ENSEASG00005026426	C12orf54 (ENSEASG00005030699) #10	ENSEASG00005028113 #12	ENSEASG00005033341 ##12	ENSEASG00005028404 ##12	ZNF641 (ENSEASG00005035267) #13	H1-7 (ENSEASG00005023523) #14	ENSEASG00005023522	ENSEASG00005026742	CCDC184 (ENSEASG00005026131) #16	ASB8 (ENSEASG00005033460) #18	PFKM (ENSEASG00005023519) #19	SENP1 (ENSEASG00005023518) ##20	COL2A1 (ENSEASG00005023517) #22	TMEM106C (ENSEASG00005023516) #23	VDR (ENSEASG00005023515) #24	HDAC7 (ENSEASG00005023514) #25	SLC48A1 (ENSEASG00005023513) #26	RAPGEF3 (ENSEASG00005023512) #27	ENDOU (ENSEASG00005023511) #28	RPAP3 (ENSEASG00005023510) #29	PCED1B (ENSEASG00005023509) #30	AMIGO2 (ENSEASG00005033046) #31	SLC38A4 (ENSEASG00005023507) #32	SLC38A2 (ENSEASG00005023506) #33	SLC38A1 (ENSEASG00005023505) #34	ENSEASG00005034576	SCAF11 (ENSEASG00005023504) #35	ARID2 (ENSEASG00005023503) #36
Horse	MODERN SPECIES	27	LALBA (ENSECAG00000001401) #7	ENSECAG00000034026 #8	OR8S15 (ENSECAG00000028893) ##9	OR8S34 (ENSECAG00000047119) ##12	OR8S33 (ENSECAG00000052992)	OR8S24 (ENSECAG00000045091)	ENSECAG00000050123	ENSECAG00000037359	C12orf54 (ENSECAG00000039802) #10	OR8S2 (ENSECAG00000052177) #12	H1-7P (ENSECAG00000041866) #14	ZNF641 (ENSECAG00000022720) #13	ASB8 (ENSECAG00000022302) #18	PFKM (ENSECAG00000015087) #19	SENP1 (ENSECAG00000010568) ##20	COL2A1 (ENSECAG00000022313) #22	TMEM106C (ENSECAG00000020351) #23	VDR (ENSECAG00000015822) #24	HDAC7 (ENSECAG00000020424) #25	SLC48A1 (ENSECAG00000031669) #26	RAPGEF3 (ENSECAG00000005870) #27	ENDOU (ENSECAG00000024137) #28	RPAP3 (ENSECAG00000020050) #29	PCED1B (ENSECAG00000052235) #30	AMIGO2 (ENSECAG00000019853) #31	SLC38A4 (ENSECAG00000012541) #32	SLC38A2 (ENSECAG00000014498) #33	SLC38A1 (ENSECAG00000007576) #34	SCAF11 (ENSECAG00000023851) #35	ARID2 (ENSECAG00000019032) #36	ENSECAG00000056897
Carnivora	ANCESTRAL SPECIES	3	ENSGT00940000159881.a.a.a #9	ENSGT00940000166925	ENSGT00980000199472	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000165904.b	ENSGT00940000165904.a	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36
Caniformia	ANCESTRAL SPECIES	19	ENSGT00940000162202.C ##12	ENSGT00940000159881.a.a.a #9	ENSGT00940000166925	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000165904.b	ENSGT00940000165904.a	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d.i.a #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36
Caniformia_b	ANCESTRAL SPECIES	17	ENSGT00940000159881.a.a.a #9	ENSGT00940000166925	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000165904.b	ENSGT00940000165904.a	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a.r	ENSGT01100000263574.a.q	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d.i.a #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Mustelinae	ANCESTRAL SPECIES	118										ENSGT01100000263574.a.r	ENSGT01100000263574.a.q	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d.i.a #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000157455.b.f
American mink	MODERN SPECIES	85										ENSNVIG00000004140	ENSNVIG00000004149	CL068 (ENSNVIG00000004152) #16	ASB8 (ENSNVIG00000004156) #18	PFKM (ENSNVIG00000004218) #19	SENP1 (ENSNVIG00000004887) ##20	COL2A1 (ENSNVIG00000004979) #22	TMEM106C (ENSNVIG00000005151) #23	VDR (ENSNVIG00000005199) #24	HDAC7 (ENSNVIG00000005246) #25	HRG1 (ENSNVIG00000005493) #26	RAPGEF3 (ENSNVIG00000005512) #27	ENDOU (ENSNVIG00000005726) #28	RPAP3 (ENSNVIG00000005809) #29	PCED1B (ENSNVIG00000005930) #30	AMIGO2 (ENSNVIG00000005943) #31	SLC38A4 (ENSNVIG00000005947) #32	SLC38A2 (ENSNVIG00000005982) #33	S38A1 (ENSNVIG00000006047) #34	SCAF11 (ENSNVIG00000006238) #35	ARID2 (ENSNVIG00000006300) #36	ENSNVIG00000006429
Ferret	MODERN SPECIES	275										ENSMPUG00000018957	ENSMPUG00000018952	CCDC184 (ENSMPUG00000018945) #16	ASB8 (ENSMPUG00000000445) #18	PFKM (ENSMPUG00000000441) #19	SENP1 (ENSMPUG00000000436) ##20	COL2A1 (ENSMPUG00000000429) #22	TMEM106C (ENSMPUG00000000424) #23	VDR (ENSMPUG00000000419) #24	HDAC7 (ENSMPUG00000000416) #25	SLC48A1 (ENSMPUG00000000410) #26	ENSMPUG00000000407 #27	ENDOU (ENSMPUG00000000406) #28	RPAP3 (ENSMPUG00000000401) #29	ENSMPUG00000000398 #30	AMIGO2 (ENSMPUG00000018940) #31	SLC38A4 (ENSMPUG00000000394) #32	SLC38A2 (ENSMPUG00000000389) #33	SLC38A1 (ENSMPUG00000000386) #34	SCAF11 (ENSMPUG00000000384) #35	ARID2 (ENSMPUG00000000380) #36	ENSMPUG00000000377
Ursidae	ANCESTRAL SPECIES	25	ENSGT00940000159881.a.a.a #9	ENSGT00940000166925	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000165904.b	ENSGT00940000165904.a	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a.r	ENSGT01100000263574.a.q	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d.i.a #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37	ENSGT00950000183093.A.a
Giant Panda	MODERN SPECIES	7	OR8S1 (ENSAMEG00000025995) #9	ENSAMEG00000030056	C12orf54 (ENSAMEG00000006120) #10	ENSAMEG00000007377	ENSAMEG00000025327 ##12	ENSAMEG00000020126	ENSAMEG00000020125	ZNF641 (ENSAMEG00000024735) #13	H1-7 (ENSAMEG00000020124) #14	OR10AD1 (ENSAMEG00000026664)	CCDC184 (ENSAMEG00000029620) #16	CCDC184 (ENSAMEG00000025183) #16	ASB8 (ENSAMEG00000013894) #18	PFKM (ENSAMEG00000013791) #19	SENP1 (ENSAMEG00000013767) ##20	COL2A1 (ENSAMEG00000027152) #22	TMEM106C (ENSAMEG00000013749) #23	VDR (ENSAMEG00000013706) #24	HDAC7 (ENSAMEG00000028928) #25	SLC48A1 (ENSAMEG00000013704) #26	RAPGEF3 (ENSAMEG00000013593) #27	ENDOU (ENSAMEG00000013582) #28	RPAP3 (ENSAMEG00000006986) #29	ENSAMEG00000029636	AMIGO2 (ENSAMEG00000019328) #31	SLC38A4 (ENSAMEG00000006884) #32	SLC38A2 (ENSAMEG00000006810) #33	SLC38A1 (ENSAMEG00000006789) #34	SCAF11 (ENSAMEG00000013392) #35	ARID2 (ENSAMEG00000013404) #36	ANO6 (ENSAMEG00000015748) #37
Canidae	ANCESTRAL SPECIES	8	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000165904.b	ENSGT00940000165904.a	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a.o.a	ENSGT01100000263574.a.o.b	ENSGT01100000263574.a.p	ENSGT00390000002978 #16	ENSGT00940000159366.j #18	ENSGT00940000155440.d.i.b.a #19	ENSGT00940000155440.d.i.a #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00950000186452	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #35
Canis_lupus	ANCESTRAL SPECIES	14	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000165904.b	ENSGT00940000165904.a	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a.o.a	ENSGT00390000001347.v.c.b	ENSGT01100000263574.a.o.b	ENSGT01100000263574.a.p	ENSGT00390000002978 #16	ENSGT00940000159366.j #18	ENSGT00940000155440.d.i.b.a #19	ENSGT00940000155440.d.i.a #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00950000186452	ENSGT01030000234916.i	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00960000189677
Dog	MODERN SPECIES	19	ENSCAFG00845025975	C27H12orf54 (ENSCAFG00845026003) #10	OR8S2 (ENSCAFG00845022189) #12	OR8S3 (ENSCAFG00845022203) ##12	ENSCAFG00845022218	OR8BJ4 (ENSCAFG00845022242)	ZNF641 (ENSCAFG00845022271) #13	ENSCAFG00845022344 #14	ENSCAFG00845022369	ENSCAFG00845022383	ENSCAFG00845022404	ENSCAFG00845022492 #16	ASB8 (ENSCAFG00845022537) #18	ENSCAFG00845022883 #19	SENP1 (ENSCAFG00845023514) ##20	COL2A1 (ENSCAFG00845023977) #22	TMEM106C (ENSCAFG00845024661) #23	VDR (ENSCAFG00845024745) #24	HDAC7 (ENSCAFG00845024987) #25	SLC48A1 (ENSCAFG00845025577) #26	RAPGEF3 (ENSCAFG00845025684) #27	ENDOU (ENSCAFG00845026395) #28	RPAP3 (ENSCAFG00845026651) #29	PCED1B (ENSCAFG00845026815) #30	AMIGO2 (ENSCAFG00845026869) #31	SLC38A4 (ENSCAFG00845026984) #32	ENSCAFG00845027350	SLC38A2 (ENSCAFG00845027394) #33	SLC38A1 (ENSCAFG00845027508) #34	SCAF11 (ENSCAFG00845027751) #35	ARID2 (ENSCAFG00845028008) #36
Red fox	MODERN SPECIES	32	ENSVVUG00000019564	ENSVVUG00000019563	ENSVVUG00000019556 ##9	ENSVVUG00000019553 ##9	C12orf54 (ENSVVUG00000019545) #10	ZNF641 (ENSVVUG00000019539) #13	ENSVVUG00000019535 #14	ENSVVUG00000019532	ENSVVUG00000019529	ENSVVUG00000019528	CCDC184 (ENSVVUG00000019524) #16	ASB8 (ENSVVUG00000019522) #18	ENSVVUG00000018191 #19	ENSVVUG00000018115 #19	SENP1 (ENSVVUG00000018093) ##20	COL2A1 (ENSVVUG00000018059) #22	TMEM106C (ENSVVUG00000018056) #23	VDR (ENSVVUG00000018048) #24	HDAC7 (ENSVVUG00000018010) #25	ENSVVUG00000017995	ENSVVUG00000017989 #27	ENSVVUG00000017974 #27	ENDOU (ENSVVUG00000017953) #28	RPAP3 (ENSVVUG00000017947) #29	ENSVVUG00000017935 #30	ENSVVUG00000017929	SLC38A4 (ENSVVUG00000017144) #32	ENSVVUG00000017102	SLC38A2 (ENSVVUG00000017097) #33	SLC38A1 (ENSVVUG00000017089) #34	ENSVVUG00000017077
Felidae	ANCESTRAL SPECIES	2	ENSGT00940000159881.a.a.b ##9	ENSGT00940000159881.a.b.b ##9	ENSGT00940000159881.a.a.a #9	ENSGT00940000166925	ENSGT00980000199472	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT01100000263574.a.t	ENSGT01100000263574.a.s	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Panthera	ANCESTRAL SPECIES		ENSGT00940000159881.a.a.b ##9	ENSGT00940000159881.a.b.b ##9	ENSGT00940000159881.a.a.a #9	ENSGT00940000166925	ENSGT00980000199472	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT01100000263574.a.t	ENSGT01100000263574.a.s	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Panthera_a	ANCESTRAL SPECIES	5	ENSGT00940000159881.a.a.b ##9	ENSGT00940000159881.a.b.b ##9	ENSGT00940000159881.a.a.a #9	ENSGT00940000166925	ENSGT00980000199472	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT01100000263574.a.t	ENSGT01100000263574.a.s	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000170855	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36
leopard	MODERN SPECIES	77	ENSPPRG00000021040 ##9	OR8S1 (ENSPPRG00000021056) #9	ENSPPRG00000021065	ENSPPRG00000005898	C12orf54 (ENSPPRG00000008760) #10	ENSPPRG00000021185 #12	ENSPPRG00000021201 ##12	ENSPPRG00000021246 ##12	ZNF641 (ENSPPRG00000009974) #13	ENSPPRG00000010042	ENSPPRG00000021316	CCDC184 (ENSPPRG00000021325) #16	ASB8 (ENSPPRG00000011411) #18	PFKM (ENSPPRG00000024853) #19	SENP1 (ENSPPRG00000024343) ##20	COL2A1 (ENSPPRG00000002708) #22	TMEM106C (ENSPPRG00000006497) #23	VDR (ENSPPRG00000007108) #24	HDAC7 (ENSPPRG00000013411) #25	SLC48A1 (ENSPPRG00000013761) #26	RAPGEF3 (ENSPPRG00000004207) #27	ENDOU (ENSPPRG00000005665) #28	RPAP3 (ENSPPRG00000008280) #29	PCED1B (ENSPPRG00000015438) #30	AMIGO2 (ENSPPRG00000015488) #31	SLC38A4 (ENSPPRG00000009487) #32	ENSPPRG00000009534	SLC38A2 (ENSPPRG00000010016) #33	SLC38A1 (ENSPPRG00000012581) #34	SCAF11 (ENSPPRG00000013839) #35	ARID2 (ENSPPRG00000018882) #36
lion	MODERN SPECIES	7	ENSPLOG00000008991 ##9	ENSPLOG00000008974 ##9	OR8S1 (ENSPLOG00000008958) #9	ENSPLOG00000008937	C12orf54 (ENSPLOG00000008880) #10	ENSPLOG00000008861 #12	ENSPLOG00000008846 ##12	ENSPLOG00000008828 ##12	ZNF641 (ENSPLOG00000008748) #13	ENSPLOG00000008660	ENSPLOG00000008640	CCDC184 (ENSPLOG00000008626) #16	ASB8 (ENSPLOG00000008587) #18	PFKM (ENSPLOG00000008489) #19	SENP1 (ENSPLOG00000008369) ##20	COL2A1 (ENSPLOG00000007843) #22	TMEM106C (ENSPLOG00000007712) #23	VDR (ENSPLOG00000007690) #24	HDAC7 (ENSPLOG00000007477) #25	ENSPLOG00000007382 #26	RAPGEF3 (ENSPLOG00000007260) #27	ENDOU (ENSPLOG00000007100) #28	RPAP3 (ENSPLOG00000007020) #29	PCED1B (ENSPLOG00000006982) #30	AMIGO2 (ENSPLOG00000006974) #31	SLC38A4 (ENSPLOG00000006929) #32	ENSPLOG00000006905	SLC38A2 (ENSPLOG00000006823) #33	ENSPLOG00000006768	SLC38A1 (ENSPLOG00000006704) #34	SCAF11 (ENSPLOG00000006624) #35
Tiger	MODERN SPECIES	14	KANSL2 (ENSPTIG00000018738)	ENSPTIG00000017690	LALBA (ENSPTIG00000016605) #7	ENSPTIG00000000424	ENSPTIG00000000411	OR8S1 (ENSPTIG00000000392) #9	C12orf54 (ENSPTIG00000015156) #10	ENSPTIG00000000355 #12	ZNF641 (ENSPTIG00000013144) #13	ENSPTIG00000000286	ENSPTIG00000000278	CCDC184 (ENSPTIG00000000266) #16	ASB8 (ENSPTIG00000009522) #18	PFKM (ENSPTIG00000018015) #19	SENP1 (ENSPTIG00000016220) ##20	COL2A1 (ENSPTIG00000021079) #22	TMEM106C (ENSPTIG00000017084) #23	VDR (ENSPTIG00000016424) #24	HDAC7 (ENSPTIG00000012011) #25	SLC48A1 (ENSPTIG00000011547) #26	RAPGEF3 (ENSPTIG00000021118) #27	ENDOU (ENSPTIG00000018880) #28	RPAP3 (ENSPTIG00000015996) #29	AMIGO2 (ENSPTIG00000006810) #31	SLC38A4 (ENSPTIG00000014780) #32	SLC38A2 (ENSPTIG00000013595) #33	SLC38A1 (ENSPTIG00000009524) #34	SCAF11 (ENSPTIG00000004819) #35	ARID2 (ENSPTIG00000018094) #36	ENSPTIG00000017063	ANO6 (ENSPTIG00000011556) #37
Cat	MODERN SPECIES	238	ENSFCAG00000026209 ##9	ENSFCAG00000031127 ##9	ENSFCAG00000026373 ##12	OR8S1 (ENSFCAG00000041999) #9	ENSFCAG00000034432	C12orf54 (ENSFCAG00000052794) #10	ENSFCAG00000026701 #12	ENSFCAG00000028364 ##12	ZNF641 (ENSFCAG00000001972) #13	OR10AD1F (ENSFCAG00000011517)	ENSFCAG00000002189	CCDC184 (ENSFCAG00000024252) #16	ASB8 (ENSFCAG00000014005) #18	PFKM (ENSFCAG00000014004) #19	SENP1 (ENSFCAG00000014003) ##20	COL2A1 (ENSFCAG00000014002) #22	TMEM106C (ENSFCAG00000014001)	VDR (ENSFCAG00000024594) #24	HDAC7 (ENSFCAG00000013999) #25	SLC48A1 (ENSFCAG00000040642) #26	RAPGEF3 (ENSFCAG00000013996) #27	ENDOU (ENSFCAG00000013989) #28	RPAP3 (ENSFCAG00000025732) #29	PCED1B (ENSFCAG00000009338) #30	AMIGO2 (ENSFCAG00000001520) #31	SLC38A4 (ENSFCAG00000014125) #32	SLC38A2 (ENSFCAG00000022021) #33	SLC38A1 (ENSFCAG00000013535) #34	SCAF11 (ENSFCAG00000012832) #35	ARID2 (ENSFCAG00000012831) #36	ANO6 (ENSFCAG00000012828) #37
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT00940000159881.a.a.a #9	ENSGT00940000166925	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000165904.b	ENSGT00940000165904.a	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a.m	ENSGT01100000263574.a.n	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Suina	ANCESTRAL SPECIES	4	ENSGT00940000159881.a.a.a #9	ENSGT00940000166925	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000165904.b	ENSGT00940000165904.a	ENSGT00940000162121 #13	ENSGT01100000263574.a.n	ENSGT00730000111596 #14	ENSGT01100000263574.a.m	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000167360	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36
Pig	MODERN SPECIES	13	ENSSSCG00000059126 ##12	ENSSSCG00000032256 ##12	ENSSSCG00000034094	ENSSSCG00000034703	ENSSSCG00000045147	ZNF641 (ENSSSCG00000021654) #13	H1-7 (ENSSSCG00000000820) #14	ENSSSCG00000040742	ENSSSCG00000053598	ENSSSCG00000044604	CCDC184 (ENSSSCG00000039340) #16	ENSSSCG00000021024	PFKM (ENSSSCG00000021129) #19	ENSSSCG00000047251	SENP1 (ENSSSCG00000000816) ##20	COL2A1 (ENSSSCG00000025523) #22	ENSSSCG00000054670	ENSSSCG00000028397 #23	VDR (ENSSSCG00000020864) #24	HDAC7 (ENSSSCG00000027859) #25	SLC48A1 (ENSSSCG00000036775) #26	RAPGEF3 (ENSSSCG00000023526) #27	ENDOU (ENSSSCG00000033142) #28	RPAP3 (ENSSSCG00000021166) #29	ENSSSCG00000043909	PCED1B (ENSSSCG00000000811) #30	AMIGO2 (ENSSSCG00000000810) #31	SLC38A4 (ENSSSCG00000026597) #32	SLC38A2 (ENSSSCG00000000808) #33	SLC38A1 (ENSSSCG00000000807) #34	ENSSSCG00000034097
Chacoan peccary	MODERN SPECIES	873	ENSCWAG00000021499	ENSCWAG00000021502	ENSCWAG00000021503	ENSCWAG00000021508 ##9	OR8S1 (ENSCWAG00000021511) #9	ENSCWAG00000021513	C12orf54 (ENSCWAG00000021517) #10	ENSCWAG00000021520 #12	ZNF641 (ENSCWAG00000021524) #13	ENSCWAG00000021534	ENSCWAG00000021538	CCDC184 (ENSCWAG00000021544) #16	ASB8 (ENSCWAG00000021553) #18	PFKM (ENSCWAG00000021591) #19	SENP1 (ENSCWAG00000021657) ##20	COL2A1 (ENSCWAG00000021677) #22	ENSCWAG00000021706	VDR (ENSCWAG00000021718) #24	HDAC7 (ENSCWAG00000021727) #25	SLC48A1 (ENSCWAG00000021779) #26	RAPGEF3 (ENSCWAG00000021800) #27	ENDOU (ENSCWAG00000021847) #28	RPAP3 (ENSCWAG00000021867) #29	PCED1B (ENSCWAG00000021873) #30	AMIGO2 (ENSCWAG00000021878) #31	SLC38A4 (ENSCWAG00000021880) #32	SLC38A2 (ENSCWAG00000021890) #33	SLC38A1 (ENSCWAG00000021900) #34	SCAF11 (ENSCWAG00000021903) #35	ARID2 (ENSCWAG00000021907) #36
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT00940000159881.a.b.b ##9	ENSGT00940000159881.a.a.a #9	ENSGT00940000166925	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000165904.b	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a.n	ENSGT01100000263574.a.m	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Camelidae	ANCESTRAL SPECIES	27	ENSGT00940000161726 #7	ENSGT00940000163803 #8	ENSGT00940000162388.B	ENSGT00940000162388.C.b	ENSGT00940000159881.a.a.b ##9	ENSGT00940000159881.a.a.a #9	ENSGT00980000199472	ENSGT00390000014843 #10	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT01100000263574.a.n	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Arabian camel	MODERN SPECIES	3	OR5BS1P (ENSCDRG00005009797) #8	ENSCDRG00005009851	ENSCDRG00005009869	ENSCDRG00005009891 ##9	OR8S1 (ENSCDRG00005009912) #9	ENSCDRG00005009926	C12orf54 (ENSCDRG00005009973) #10	ENSCDRG00005010054 ##12	ENSCDRG00005010078 ##12	ZNF641 (ENSCDRG00005010093) #13	OR10AD1 (ENSCDRG00005010130)	CCDC184 (ENSCDRG00005010144) #16	ASB8 (ENSCDRG00005010171) #18	PFKM (ENSCDRG00005010318) #19	SENP1 (ENSCDRG00005011059) ##20	COL2A1 (ENSCDRG00005011215) #22	TMEM106C (ENSCDRG00005011788) #23	VDR (ENSCDRG00005011877) #24	HDAC7 (ENSCDRG00005012006) #25	SLC48A1 (ENSCDRG00005012473) #26	RAPGEF3 (ENSCDRG00005012525) #27	ENDOU (ENSCDRG00005012943) #28	RPAP3 (ENSCDRG00005013159) #29	PCED1B (ENSCDRG00005013290) #30	AMIGO2 (ENSCDRG00005013338) #31	SLC38A4 (ENSCDRG00005013359) #32	SLC38A2 (ENSCDRG00005013409) #33	SLC38A1 (ENSCDRG00005013640) #34	SCAF11 (ENSCDRG00005013730) #35	ARID2 (ENSCDRG00005013876) #36	ANO6 (ENSCDRG00005014121) #37
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT00940000159881.a.b.b ##9	ENSGT00940000159881.a.a.a #9	ENSGT00940000166925	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000165904.b	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a.n	ENSGT01100000263574.a.m	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Cetacea	ANCESTRAL SPECIES	8	ENSGT00940000155687	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000165904.b	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00940000155606.b	ENSGT00950000182837.b.a	ENSGT00940000155687	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00940000155606.b	ENSGT00950000182837.b.a	ENSGT00940000155687	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00940000155606.b	ENSGT00950000182837.b.a	ENSGT00940000155687	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000153771.B.f.b	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00940000155606.b	ENSGT00950000182837.b.a	ENSGT00940000155687	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000153771.B.f.b	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36
Narwhal	MODERN SPECIES	313	DDX23 (ENSMMNG00015021351)	CACNB3 (ENSMMNG00015021282)	ADCY6 (ENSMMNG00015021235)	TEX49 (ENSMMNG00015021216)	CCNT1 (ENSMMNG00015021207)	KANSL2 (ENSMMNG00015021172)	LALBA (ENSMMNG00015021155) #7	ENSMMNG00015021133 #12	ENSMMNG00015021120 ##12	ZNF641 (ENSMMNG00015021069) #13	ENSMMNG00015021040 #14	CCDC184 (ENSMMNG00015021019) #16	ASB8 (ENSMMNG00015020972) #18	PFKM (ENSMMNG00015020844) #19	SENP1 (ENSMMNG00015020735) ##20	COL2A1 (ENSMMNG00015020553) #22	TMEM106C (ENSMMNG00015020428) #23	VDR (ENSMMNG00015020345) #24	HDAC7 (ENSMMNG00015020264) #25	SLC48A1 (ENSMMNG00015020233) #26	RAPGEF3 (ENSMMNG00015020182) #27	ENDOU (ENSMMNG00015020139) #28	RPAP3 (ENSMMNG00015020088) #29	PCED1B (ENSMMNG00015020062) #30	AMIGO2 (ENSMMNG00015020049) #31	SLC38A4 (ENSMMNG00015020012) #32	SLC38A2 (ENSMMNG00015019933) #33	ENSMMNG00015019874	ENSMMNG00015019850	SLC38A1 (ENSMMNG00015019812) #34	SCAF11 (ENSMMNG00015019745) #35
Vaquita	MODERN SPECIES	1	DDX23 (ENSPSNG00000012273)	CACNB3 (ENSPSNG00000012498)	ADCY6 (ENSPSNG00000012820)	TEX49 (ENSPSNG00000012970)	CCNT1 (ENSPSNG00000013040)	KANSL2 (ENSPSNG00000013130)	LALBA (ENSPSNG00000013222) #7	ENSPSNG00000013321 #12	ENSPSNG00000013345 ##12	ZNF641 (ENSPSNG00000013419) #13	ENSPSNG00000013590 #14	CCDC184 (ENSPSNG00000013611) #16	ASB8 (ENSPSNG00000013660) #18	PFKM (ENSPSNG00000013971) #19	SENP1 (ENSPSNG00000014150) ##20	COL2A1 (ENSPSNG00000014320) #22	ENSPSNG00000015715	VDR (ENSPSNG00000015833) #24	HDAC7 (ENSPSNG00000016072) #25	SLC48A1 (ENSPSNG00000016574) #26	RAPGEF3 (ENSPSNG00000016690) #27	ENDOU (ENSPSNG00000017476) #28	RPAP3 (ENSPSNG00000017591) #29	PCED1B (ENSPSNG00000017685) #30	AMIGO2 (ENSPSNG00000017698) #31	SLC38A4 (ENSPSNG00000017720) #32	SLC38A2 (ENSPSNG00000017866) #33	ENSPSNG00000017924	SLC38A1 (ENSPSNG00000017977) #34	SCAF11 (ENSPSNG00000018057) #35	ARID2 (ENSPSNG00000018161) #36
Dolphin	MODERN SPECIES	4953																COL2A1 (ENSTTRG00000000736) #22	TMEM106C (ENSTTRG00000000739) #23
Sperm whale	MODERN SPECIES	17	RND1 (ENSPCTG00005009054)	DDX23 (ENSPCTG00005009112)	CACNB3 (ENSPCTG00005009465)	ADCY6 (ENSPCTG00005009811)	TEX49 (ENSPCTG00005009964)	CCNT1 (ENSPCTG00005010029)	KANSL2 (ENSPCTG00005010081)	LALBA (ENSPCTG00005010137) #7	OR10AD1 (ENSPCTG00005010253)	ZNF641 (ENSPCTG00005010300) #13	H1-7 (ENSPCTG00005010454) #14	CCDC184 (ENSPCTG00005010471) #16	ASB8 (ENSPCTG00005010504) #18	PFKM (ENSPCTG00005010671) #19	SENP1 (ENSPCTG00005011241) ##20	COL2A1 (ENSPCTG00005011414) #22	TMEM106C (ENSPCTG00005012469) #23	ENSPCTG00005012530 #24	ENSPCTG00005012582 #27	ENDOU (ENSPCTG00005012635) #28	RPAP3 (ENSPCTG00005012982) #29	PCED1B (ENSPCTG00005013140) #30	AMIGO2 (ENSPCTG00005013162) #31	SLC38A4 (ENSPCTG00005013196) #32	SLC38A2 (ENSPCTG00005013434) #33	SLC38A1 (ENSPCTG00005013721) #34	SCAF11 (ENSPCTG00005013873) #35	ARID2 (ENSPCTG00005014080) #36	ANO6 (ENSPCTG00005014283) #37	DBX2 (ENSPCTG00005015501)	NELL2 (ENSPCTG00005015611)
Blue whale	MODERN SPECIES	1	CCNT1 (ENSBMSG00010015691)	KANSL2 (ENSBMSG00010015639)	LALBA (ENSBMSG00010015595) #7	C12orf54 (ENSBMSG00010015534) #10	ENSBMSG00010015505 #12	ENSBMSG00010015482 ##12	ENSBMSG00010015450 ##12	ENSBMSG00010015426	ZNF641 (ENSBMSG00010015344) #13	H1-7 (ENSBMSG00010015314) #14	CCDC184 (ENSBMSG00010015284) #16	ASB8 (ENSBMSG00010015216) #18	PFKM (ENSBMSG00010014688) #19	SENP1 (ENSBMSG00010014499) ##20	ENSBMSG00010014464	COL2A1 (ENSBMSG00010013975) #22	ENSBMSG00010013800	VDR (ENSBMSG00010013757) #24	HDAC7 (ENSBMSG00010013664) #25	SLC48A1 (ENSBMSG00010013623) #26	RAPGEF3 (ENSBMSG00010013532) #27	ENDOU (ENSBMSG00010013477) #28	RPAP3 (ENSBMSG00010013445) #29	PCED1B (ENSBMSG00010016068) #30	AMIGO2 (ENSBMSG00010016060) #31	SLC38A4 (ENSBMSG00010015997) #32	SLC38A2 (ENSBMSG00010015940) #33	SLC38A1 (ENSBMSG00010015910) #34	SCAF11 (ENSBMSG00010015827) #35	ARID2 (ENSBMSG00010015611) #36	ENSBMSG00010015578
Pecora	ANCESTRAL SPECIES	3	ENSGT00940000159881.a.a.a #9	ENSGT00940000166925	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000165904.b	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT00940000156867.b	ENSGT01100000263574.a.m	ENSGT01100000263574.a.n	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Yarkand deer	MODERN SPECIES	22	ENSCHYG00000007400	C12orf54 (ENSCHYG00000007414) #10	ENSCHYG00000007444 #12	ENSCHYG00000007454	ENSCHYG00000007460 ##12	ZNF641 (ENSCHYG00000007470) #13	ENSCHYG00000007526 #14	ENSCHYG00000007543	ENSCHYG00000007556	ENSCHYG00000007569	ENSCHYG00000007573	CCDC184 (ENSCHYG00000007582) #16	ASB8 (ENSCHYG00000007595) #18	PFKM (ENSCHYG00000007655) #19	SENP1 (ENSCHYG00000007824) ##20	COL2A1 (ENSCHYG00000008041) #22	TMEM106C (ENSCHYG00000008675) #23	VDR (ENSCHYG00000008988) #24	HDAC7 (ENSCHYG00000009079) #25	SLC48A1 (ENSCHYG00000009816) #26	RAPGEF3 (ENSCHYG00000009893) #27	ENDOU (ENSCHYG00000010435) #28	RPAP3 (ENSCHYG00000010905) #29	PCED1B (ENSCHYG00000011150) #30	AMIGO2 (ENSCHYG00000011168) #31	SLC38A4 (ENSCHYG00000011229) #32	SLC38A2 (ENSCHYG00000011401) #33	SLC38A1 (ENSCHYG00000011653) #34	SCAF11 (ENSCHYG00000011867) #35	ARID2 (ENSCHYG00000012041) #36	ANO6 (ENSCHYG00000012341) #37
Percora_a	ANCESTRAL SPECIES	3	ENSGT00940000159881.a.b.b ##9	ENSGT00940000159881.a.a.a #9	ENSGT00940000166925	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000165904.b	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a.n	ENSGT01100000263574.a.m	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Siberian musk deer	MODERN SPECIES	320	ENSMMSG00000010488	ENSMMSG00000010450	ENSMMSG00000010441	C12orf54 (ENSMMSG00000010410) #10	ENSMMSG00000010379	ENSMMSG00000010363 ##12	ENSMMSG00000010346	ZNF641 (ENSMMSG00000010279) #13	ENSMMSG00000010261 #14	ENSMMSG00000010253	OR10AD1 (ENSMMSG00000010227)	CCDC184 (ENSMMSG00000010194) #16	ASB8 (ENSMMSG00000010152) #18	PFKM (ENSMMSG00000009771) #19	SENP1 (ENSMMSG00000009631) ##20	COL2A1 (ENSMMSG00000009036) #22	TMEM106C (ENSMMSG00000008918) #23	VDR (ENSMMSG00000008846) #24	HDAC7 (ENSMMSG00000008049) #25	SLC48A1 (ENSMMSG00000007952) #26	RAPGEF3 (ENSMMSG00000007735) #27	ENDOU (ENSMMSG00000007532) #28	RPAP3 (ENSMMSG00000007438) #29	PCED1B (ENSMMSG00000007404) #30	SLC38A4 (ENSMMSG00000007377) #32	SLC38A2 (ENSMMSG00000007239) #33	SLC38A1 (ENSMMSG00000007143) #34	SCAF11 (ENSMMSG00000007056) #35	ARID2 (ENSMMSG00000006929) #36	ANO6 (ENSMMSG00000006529) #37	DBX2 (ENSMMSG00000006460)
Bovidae	ANCESTRAL SPECIES	3	ENSGT00940000159881.a.a.a #9	ENSGT00940000166925	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000165904.b	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a.n	ENSGT00940000156867.b	ENSGT01100000263574.a.m	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000005254.i.a.b.e.b	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36
Caprinae	ANCESTRAL SPECIES		ENSGT00940000162388.B	ENSGT00940000162388.C.a	ENSGT00940000159881.a.a.b ##9	ENSGT00940000159881.a.b.b ##9	ENSGT00940000159881.a.a.a #9	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162121 #13	ENSGT00940000156867.b	ENSGT01100000263574.a.m	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000005254.i.a.b.e.b	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36
Rambouillet Sheep	MODERN SPECIES	19	ENSOARG00020002030	ENSOARG00020002038	ENSOARG00020002069 ##9	ENSOARG00020002087 ##9	OR8S1 (ENSOARG00020002101) #9	ENSOARG00020002107 ##9	C12orf54 (ENSOARG00020002119) #10	ENSOARG00020002130 #12	ZNF641 (ENSOARG00020002143) #13	ENSOARG00020002155	ENSOARG00020002162	CCDC184 (ENSOARG00020002171) #16	ASB8 (ENSOARG00020002188) #18	PFKM (ENSOARG00020002234) #19	SENP1 (ENSOARG00020002321) ##20	COL2A1 (ENSOARG00020002410) #22	TMEM106C (ENSOARG00020002677) #23	HDAC7 (ENSOARG00020002745) #25	SLC48A1 (ENSOARG00020002825) #26	RAPGEF3 (ENSOARG00020002846) #27	ENDOU (ENSOARG00020002938) #28	RPAP3 (ENSOARG00020003111) #29	ENSOARG00020003251	PCED1B (ENSOARG00020003260) #30	AMIGO2 (ENSOARG00020003270) #31	SLC38A4 (ENSOARG00020003294) #32	SLC38A2 (ENSOARG00020003471) #33	SLC38A1 (ENSOARG00020003616) #34	SCAF11 (ENSOARG00020003734) #35	ARID2 (ENSOARG00020003803) #36	ANO6 (ENSOARG00020003993) #37
Goat	MODERN SPECIES	24	KANSL2 (ENSCHIG00000026147)	LALBA (ENSCHIG00000021449) #7	ENSCHIG00000011758	ENSCHIG00000022566 ##9	C12orf54 (ENSCHIG00000026745) #10	ENSCHIG00000011654 #12	ENSCHIG00000009579 ##12	ZNF641 (ENSCHIG00000023090) #13	ENSCHIG00000009244	ENSCHIG00000009773	ENSCHIG00000016938	ENSCHIG00000012693	ASB8 (ENSCHIG00000009981) #18	PFKM (ENSCHIG00000025820) #19	SENP1 (ENSCHIG00000021315) ##20	COL2A1 (ENSCHIG00000009616) #22	TMEM106C (ENSCHIG00000025500) #23	VDR (ENSCHIG00000023586) #24	HDAC7 (ENSCHIG00000012597) #25	SLC48A1 (ENSCHIG00000012327) #26	RAPGEF3 (ENSCHIG00000010621) #27	ENSCHIG00000018045 #28	RPAP3 (ENSCHIG00000011915) #29	ENSCHIG00000013454	PCED1B (ENSCHIG00000003911) #30	AMIGO2 (ENSCHIG00000013658) #31	SLC38A4 (ENSCHIG00000016540) #32	SLC38A2 (ENSCHIG00000010302) #33	SLC38A1 (ENSCHIG00000001165) #34	ENSCHIG00000011733	SCAF11 (ENSCHIG00000016618) #35
Bovinae	ANCESTRAL SPECIES	17	ENSGT00940000159881.a.b.b ##9	ENSGT00940000159881.a.a.a #9	ENSGT00940000166925	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000165904.b	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a.n	ENSGT01100000263574.a.m	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000005254.j	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36
American bison	MODERN SPECIES	3008								ENSBBBG00000007607 #12	ENSBBBG00000006991 ##12	ZNF641 (ENSBBBG00000003561) #13	OR10AD1 (ENSBBBG00000014653)	CCDC184 (ENSBBBG00000014636) #16	ASB8 (ENSBBBG00000014631) #18	PFKM (ENSBBBG00000003512) #19	SENP1 (ENSBBBG00000014417) ##20	COL2A1 (ENSBBBG00000003288) #22	TMEM106C (ENSBBBG00000014271) #23	VDR (ENSBBBG00000014238) #24	HDAC7 (ENSBBBG00000014193) #25	SLC48A1 (ENSBBBG00000014099) #26	RAPGEF3 (ENSBBBG00000003149) #27	ENDOU (ENSBBBG00000003048) #28	RPAP3 (ENSBBBG00000003039) #29	ENSBBBG00000013896	PCED1B (ENSBBBG00000013892) #30	AMIGO2 (ENSBBBG00000013887) #31	SLC38A4 (ENSBBBG00000002999) #32	SLC38A2 (ENSBBBG00000013855) #33	SLC38A1 (ENSBBBG00000013825) #34	SCAF11 (ENSBBBG00000002951) #35	ARID2 (ENSBBBG00000007979) #36
Bos	ANCESTRAL SPECIES	2	ENSGT00940000159881.a.a.a #9	ENSGT00940000166925	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000163941.A	ENSGT00940000162202.B ##12	ENSGT00940000165904.b	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a.n	ENSGT01100000263574.a.m	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.a.b.a.a.b	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000005254.j	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.b.b.a.a.a.a.b.a.a.b.a	ENSGT00940000155486 #33	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.a.a.a.a.a.b.a
Bos_b	ANCESTRAL SPECIES	4	ENSGT00940000159881.a.a.a #9	ENSGT00940000166925	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000163941.A	ENSGT00940000162202.B ##12	ENSGT00940000165904.b	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a.n	ENSGT01100000263574.a.m	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.a.b.a.a.b	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000005254.j	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.b.b.a.a.a.a.b.a.a.b.a	ENSGT00940000155486 #33	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.a.a.a.a.a.b.a
Hybrid Bos Indicus	MODERN SPECIES	24	ENSBIXG00005021096	ENSBIXG00005021105	ENSBIXG00005021112	ENSBIXG00005021120	ENSBIXG00005021140	C12orf54 (ENSBIXG00005021156) #10	ENSBIXG00005021163 #12	ENSBIXG00005021184 ##12	ZNF641 (ENSBIXG00005021295) #13	ENSBIXG00005021302 #14	ENSBIXG00005021327	CCDC184 (ENSBIXG00005021363) #16	ASB8 (ENSBIXG00005005446) #18	PFKM (ENSBIXG00005021906) #19	SENP1 (ENSBIXG00005022082) ##20	COL2A1 (ENSBIXG00005022157) #22	TMEM106C (ENSBIXG00005022255) #23	VDR (ENSBIXG00005022293) #24	HDAC7 (ENSBIXG00005022454) #25	SLC48A1 (ENSBIXG00005022519) #26	ENSBIXG00005022526	RAPGEF3 (ENSBIXG00005022592) #27	ENDOU (ENSBIXG00005022710) #28	RPAP3 (ENSBIXG00005022769) #29	ENSBIXG00005022795	ENSBIXG00005022807	PCED1B (ENSBIXG00005022843) #30	AMIGO2 (ENSBIXG00005006671) #31	ENSBIXG00005022876	SLC38A4 (ENSBIXG00005023039) #32	ENSBIXG00005023082
Cow	MODERN SPECIES	24	OR8S24 (ENSBTAG00000052728)	C5H12orf54 (ENSBTAG00000016996) #10	OR8S2 (ENSBTAG00000050238) #12	OR8S26 (ENSBTAG00000051820)	OR8S3 (ENSBTAG00000014748) ##12	OR5BJ2 (ENSBTAG00000004181)	ZNF641 (ENSBTAG00000016496) #13	ENSBTAG00000053875 #14	H1-7 (ENSBTAG00000048712) #14	ENSBTAG00000032429	ENSBTAG00000032428	CCDC184 (ENSBTAG00000002390) #16	ASB8 (ENSBTAG00000000289) #18	PFKM (ENSBTAG00000000286) #19	SENP1 (ENSBTAG00000012423) ##20	COL2A1 (ENSBTAG00000013155) #22	TMEM106C (ENSBTAG00000000454) #23	VDR (ENSBTAG00000016414) #24	HDAC7 (ENSBTAG00000026819) #25	SLC48A1 (ENSBTAG00000032331) #26	RAPGEF3 (ENSBTAG00000006828) #27	ENDOU (ENSBTAG00000012275) #28	RPAP3 (ENSBTAG00000018690) #29	ENSBTAG00000038027	PCED1B (ENSBTAG00000011838) #30	AMIGO2 (ENSBTAG00000002025) #31	ENSBTAG00000050492	ENSBTAG00000052030	SLC38A4 (ENSBTAG00000014197) #32	SLC38A2 (ENSBTAG00000011105) #33	SLC38A1 (ENSBTAG00000000859) #34
Bos_a	ANCESTRAL SPECIES	3	ENSGT00940000166925	ENSGT00940000159881.a.a.a #9	ENSGT00390000014843 #10	ENSGT00940000162202.A #12	ENSGT00940000163941.A	ENSGT00940000162202.B ##12	ENSGT00940000165904.b	ENSGT00940000162121 #13	ENSGT00940000156867.b	ENSGT01100000263574.a.m	ENSGT01100000263574.a.n	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b.f ##20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.a.b.a.a.b	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000005254.j	ENSGT00390000002231.d.a #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.b.b.a.a.a.a.b.a.a.b.a	ENSGT00940000155486 #33	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.a.a.a.a.a.b.a
Wild yak	MODERN SPECIES	1778	ENSBMUG00000002379 #9	C12orf54 (ENSBMUG00000002365) #10	ENSBMUG00000002342 #12	ENSBMUG00000002327	ENSBMUG00000002313 ##12	ENSBMUG00000002299	ZNF641 (ENSBMUG00000002281) #13	ENSBMUG00000002264	ENSBMUG00000002248	ENSBMUG00000002230	ENSBMUG00000002218	CCDC184 (ENSBMUG00000002197) #16	ASB8 (ENSBMUG00000002154) #18	PFKM (ENSBMUG00000002064) #19	SENP1 (ENSBMUG00000001912) ##20	COL2A1 (ENSBMUG00000001852) #22	TMEM106C (ENSBMUG00000001676) #23	VDR (ENSBMUG00000001652) #24	HDAC7 (ENSBMUG00000001600) #25	SLC48A1 (ENSBMUG00000001456) #26	RAPGEF3 (ENSBMUG00000001404) #27	ENSBMUG00000000854	ENDOU (ENSBMUG00000000833) #28	RPAP3 (ENSBMUG00000000725) #29	ENSBMUG00000000628
Domestic yak	DUPLICATION
Domestic yak	MODERN SPECIES	10	ENSBGRG00000008662	ABCC3 (ENSBGRG00000008314)	CACNA1G (ENSBGRG00000007753)	SPATA20 (ENSBGRG00000007324)	EPN3 (ENSBGRG00000007020)	ENSBGRG00000006975	MYCBPAP (ENSBGRG00000006682)	RSAD1 (ENSBGRG00000006561)	CHAD (ENSBGRG00000006506)	ACSF2 (ENSBGRG00000006209)	LRRC59 (ENSBGRG00000006181)	ENSBGRG00000006118	MRPL27 (ENSBGRG00000006073)	XYLT2 (ENSBGRG00000006039)	TMEM92 (ENSBGRG00000005968)	ENSBGRG00000005548 #22	ENSBGRG00000005480	SGCA (ENSBGRG00000005458)	PPP1R9B (ENSBGRG00000005352)	SAMD14 (ENSBGRG00000005298)	PDK2 (ENSBGRG00000005164)	ITGA3 (ENSBGRG00000004960)	DLX3 (ENSBGRG00000004899)	DLX4 (ENSBGRG00000004841)	ENSBGRG00000004821	ENSBGRG00000004724	KAT7 (ENSBGRG00000004007)	FAM117A (ENSBGRG00000023813)	SLC35B1 (ENSBGRG00000023699)	SPOP (ENSBGRG00000023618)	NXPH3 (ENSBGRG00000023572)
Domestic yak	MODERN SPECIES	24	ENSBGRG00000000448	ENSBGRG00000000442	ENSBGRG00000000434 ##9	ENSBGRG00000000426 ##9	ENSBGRG00000000359	C12orf54 (ENSBGRG00000000348) #10	ENSBGRG00000000340 #12	ENSBGRG00000000325 ##12	ZNF641 (ENSBGRG00000000300) #13	ENSBGRG00000000281	OR10AD1 (ENSBGRG00000025187)	CCDC184 (ENSBGRG00000025146) #16	ASB8 (ENSBGRG00000025109) #18	PFKM (ENSBGRG00000025004) #19	SENP1 (ENSBGRG00000024903) ##20	COL2A1 (ENSBGRG00000024422) #22	TMEM106C (ENSBGRG00000024215) #23	VDR (ENSBGRG00000024120) #24	HDAC7 (ENSBGRG00000023703) #25	SLC48A1 (ENSBGRG00000023644) #26	ENSBGRG00000023626	RAPGEF3 (ENSBGRG00000023304) #27	ENDOU (ENSBGRG00000023048) #28	RPAP3 (ENSBGRG00000022895) #29	ENSBGRG00000022882	PCED1B (ENSBGRG00000022854) #30	AMIGO2 (ENSBGRG00000022846) #31	ENSBGRG00000022830	SLC38A4 (ENSBGRG00000022761) #32	ENSBGRG00000022751	SLC38A2 (ENSBGRG00000022600) #33
Atlantogenata	ANCESTRAL SPECIES	5						ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000165904	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Xenarthra	ANCESTRAL SPECIES	89					ENSGT00940000162202.A #12	ENSGT00940000162202.B ##12	ENSGT00940000162202.C ##12	ENSGT00940000165904	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b #35	ENSGT00390000016138 #36
Sloth	MODERN SPECIES	3262																ENSCHOG00000004461 #22
Armadillo	MODERN SPECIES	2755	ENSDNOG00000034732	ENSDNOG00000036713 #12	ENSDNOG00000040545 ##12	ENSDNOG00000047921 ##12	ENSDNOG00000036636	ZNF641 (ENSDNOG00000014189) #13	ENSDNOG00000040359 #14	ENSDNOG00000042091	ENSDNOG00000044077	ENSDNOG00000036277	ENSDNOG00000047833	CCDC184 (ENSDNOG00000007955) #16	ASB8 (ENSDNOG00000042195) #18	PFKM (ENSDNOG00000004291) #19	SENP1 (ENSDNOG00000009135) #20	COL2A1 (ENSDNOG00000009040) #22	TMEM106C (ENSDNOG00000034153) #23	VDR (ENSDNOG00000039161) #24	HDAC7 (ENSDNOG00000018384) #25	RAPGEF3 (ENSDNOG00000039847) #27	ENDOU (ENSDNOG00000041014) #28	RPAP3 (ENSDNOG00000016199) #29	PCED1B (ENSDNOG00000043188) #30	AMIGO2 (ENSDNOG00000038459) #31	SLC38A4 (ENSDNOG00000008801) #32	ENSDNOG00000048779	SLC38A2 (ENSDNOG00000036254) #33	SLC38A1 (ENSDNOG00000018363) #34	SCAF11 (ENSDNOG00000015953) #35	ARID2 (ENSDNOG00000014939) #36	ENSDNOG00000049022
Afrotheria	ANCESTRAL SPECIES	25	ENSGT00940000162388.B.h	ENSGT00940000162388.A	ENSGT00940000159881.a.b.b ##9	ENSGT00940000159881.a.b.a ##9	ENSGT00940000163941.A	ENSGT00940000162202.C ##12	ENSGT00940000159881.a.a.a.f.a #9	ENSGT00940000162202.A #12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Tenrec	MODERN SPECIES	2983											OR10AD1 (ENSETEG00000010390)	ENSETEG00000010388	CCDC184 (ENSETEG00000010387) #16	PFKM (ENSETEG00000010383) #19	SENP1 (ENSETEG00000010380) #20	COL2A1 (ENSETEG00000010372) #22	TMEM106C (ENSETEG00000010370) #23
Afrotheria_a	ANCESTRAL SPECIES	24	ENSGT00940000162388.B.g	ENSGT00940000162388.B.h	ENSGT00940000162388.A	ENSGT00940000159881.a.b.b ##9	ENSGT00940000159881.a.b.a ##9	ENSGT00940000163941.A	ENSGT00940000162202.C ##12	ENSGT00940000159881.a.a.a.f.a #9	ENSGT00940000162202.A #12	ENSGT00940000162121 #13	ENSGT00730000111596 #14	ENSGT01100000263574.a	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00390000002231.d #30	ENSGT00950000183146.a.a #31	ENSGT00940000158917 #32	ENSGT00940000155486 #33	ENSGT00940000160716 #34	ENSGT00950000183205.b.a.b.a.b.b #35	ENSGT00390000016138 #36	ENSGT00940000158969 #37
Elephant	MODERN SPECIES	196	ENSLAFG00000022304	ENSLAFG00000031884 #9	ENSLAFG00000028221 #9	ENSLAFG00000025869 #9	ENSLAFG00000030592 #9	ENSLAFG00000029232 #9	ENSLAFG00000032661 #9	ENSLAFG00000032033 #12	ZNF641 (ENSLAFG00000029324) #13	H1-7 (ENSLAFG00000013967) #14	ENSLAFG00000027833	ENSLAFG00000027423	ASB8 (ENSLAFG00000010013) #18	PFKM (ENSLAFG00000010006) #19	SENP1 (ENSLAFG00000010002) #20	COL2A1 (ENSLAFG00000010049) #22	TMEM106C (ENSLAFG00000022701) #23	VDR (ENSLAFG00000006418) #24	HDAC7 (ENSLAFG00000004321) #25	SLC48A1 (ENSLAFG00000032459) #26	RAPGEF3 (ENSLAFG00000014781) #27	ENDOU (ENSLAFG00000007690) #28	RPAP3 (ENSLAFG00000007683) #29	PCED1B (ENSLAFG00000029347) #30	AMIGO2 (ENSLAFG00000009136) #31	ENSLAFG00000025910	SLC38A4 (ENSLAFG00000016067) #32	SLC38A2 (ENSLAFG00000011562) #33	SLC38A1 (ENSLAFG00000005185) #34	SCAF11 (ENSLAFG00000022012) #35	ARID2 (ENSLAFG00000004415) #36
Hyrax	MODERN SPECIES	2435															SENP1 (ENSPCAG00000008511) #20	COL2A1 (ENSPCAG00000008235) #22	ENSPCAG00000008190
Marsupialia	ANCESTRAL SPECIES	24	ENSGT00940000159521	ENSGT00940000153804.B	ENSGT00940000158666	ENSGT00940000155606.b	ENSGT00950000182837.b.a	ENSGT00940000155687	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00730000111596 #14	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29
Marsupialia_b	ANCESTRAL SPECIES	12	ENSGT00940000159521	ENSGT00940000153804.B	ENSGT00940000158666	ENSGT00940000155606.b	ENSGT00950000182837.b.a	ENSGT00940000155687	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00730000111596 #14	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT00940000153380.A	ENSGT00390000018322	ENSGT01050000244951.a.a	ENSGT00390000005178	ENSGT00390000003443	ENSGT00940000153377.C	ENSGT00940000160124	ENSGT00390000004933	ENSGT00390000015899
Diprotodontia	ANCESTRAL SPECIES	29	ENSGT00940000159521	ENSGT00940000153804.B	ENSGT00940000158666	ENSGT00940000155606.b	ENSGT00950000182837.b.a	ENSGT00940000155687	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00730000111596 #14	ENSGT00390000002978 #16	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT01050000244951.a.a	ENSGT00390000005178	ENSGT00390000003443	ENSGT00940000153377.C	ENSGT00940000160124	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Diprotodontia_a	ANCESTRAL SPECIES	29	ENSGT00940000159521	ENSGT00940000153804.B	ENSGT00940000158666	ENSGT00940000155606.b	ENSGT00950000182837.b.a	ENSGT00940000155687	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726 #7	ENSGT00730000111596 #14	ENSGT00390000002978 #16	ENSGT00940000159366.g #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00530000063825.B #28	ENSGT00940000156749 #29	ENSGT01050000244951.a.a	ENSGT00390000005178	ENSGT00390000003443	ENSGT00940000153377.C	ENSGT00940000160124	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A
Common wonbat	MODERN SPECIES	1128	WNT10B (ENSVURG00010006404)	ARF3 (ENSVURG00010006396)	ENSVURG00010006389	CCDC65 (ENSVURG00010006366)	RND1 (ENSVURG00010006356)	DDX23 (ENSVURG00010006330)	CACNB3 (ENSVURG00010006214)	ADCY6 (ENSVURG00010006156)	TEX49 (ENSVURG00010006146)	CCNT1 (ENSVURG00010006120)	KANSL2 (ENSVURG00010006093)	ENSVURG00010006084 #7	ASB8 (ENSVURG00010006046) #18	PFKM (ENSVURG00010005884) #19	SENP1 (ENSVURG00010005800) #20	COL2A1 (ENSVURG00010005638) #22	VDR (ENSVURG00010005603) #24	HDAC7 (ENSVURG00010005565) #25	SLC48A1 (ENSVURG00010005551) #26	RAPGEF3 (ENSVURG00010005514) #27	ENDOU (ENSVURG00010005446) #28	RPAP3 (ENSVURG00010005415) #29	PPFIBP1 (ENSVURG00010005147)	REP15 (ENSVURG00010005093)	ENSVURG00010005084	MRPS35 (ENSVURG00010005073)	MANSC4 (ENSVURG00010005058)	KLHL42 (ENSVURG00010005046)	PTHLH (ENSVURG00010005036)	ENSVURG00010005020	CCDC91 (ENSVURG00010004967)
koala	MODERN SPECIES	309	ENSPCIG00000037193	RND1 (ENSPCIG00000002332)	DDX23 (ENSPCIG00000027691)	CACNB3 (ENSPCIG00000027695)	ADCY6 (ENSPCIG00000027700)	TEX49 (ENSPCIG00000027707)	CCNT1 (ENSPCIG00000027711)	KANSL2 (ENSPCIG00000027713)	LALBA (ENSPCIG00000004161) #7	ENSPCIG00000016478 #18	ENSPCIG00000016482 #14	CCDC184 (ENSPCIG00000016483) #16	ENSPCIG00000032651 #18	PFKM (ENSPCIG00000015868) #19	SENP1 (ENSPCIG00000014356) #20	COL2A1 (ENSPCIG00000035466) #22	VDR (ENSPCIG00000036228) #24	HDAC7 (ENSPCIG00000012641) #25	SLC48A1 (ENSPCIG00000012639) #26	RAPGEF3 (ENSPCIG00000011994) #27	ENDOU (ENSPCIG00000005038) #28	RPAP3 (ENSPCIG00000005053) #29	ENSPCIG00000005069	PPFIBP1 (ENSPCIG00000005251)	ENSPCIG00000008273	MANSC4 (ENSPCIG00000034424)	KLHL42 (ENSPCIG00000013304)	PTHLH (ENSPCIG00000008278)
Wallaby	MODERN SPECIES	4674																COL2A1 (ENSMEUG00000008551) #22
Tasmanian devil	MODERN SPECIES	4	CCDC65 (ENSSHAG00000023185)	DDX23 (ENSSHAG00000006590)	ENSSHAG00000028151	ENSSHAG00000007601	ENSSHAG00000007370	ENSSHAG00000006801	ENSSHAG00000026560	ENSSHAG00000003347	ENSSHAG00000001583	ENSSHAG00000024530 #16	ENSSHAG00000001392 #7	ENSSHAG00000029127 #14	ASB8 (ENSSHAG00000030428) #18	PFKM (ENSSHAG00000031357) #19	SENP1 (ENSSHAG00000003840) #20	COL2A1 (ENSSHAG00000004561) #22	VDR (ENSSHAG00000026302) #24	HDAC7 (ENSSHAG00000002512) #25	SLC48A1 (ENSSHAG00000021603) #26	RAPGEF3 (ENSSHAG00000005360) #27	ENDOU (ENSSHAG00000005997) #28	ENSSHAG00000001522 #29	ENSSHAG00000002970	ENSSHAG00000009260	ENSSHAG00000022144	MRPS35 (ENSSHAG00000031147)	MANSC4 (ENSSHAG00000010881)	KLHL42 (ENSSHAG00000029304)	PTHLH (ENSSHAG00000008737)	CCDC91 (ENSSHAG00000028199)	FAR2 (ENSSHAG00000005669)
Opossum	MODERN SPECIES	328										PA2G4 (ENSMODG00000002001)	ERBB3 (ENSMODG00000001980)	ENSMODG00000001946	ENSMODG00000037240	IKZF4 (ENSMODG00000036580)	MMP19 (ENSMODG00000042726)	COL2A1 (ENSMODG00000001752) #22	ENSMODG00000037772	ENSMODG00000001727	METTL7B (ENSMODG00000001722)	ENSMODG00000028774 #24
Platypus	MODERN SPECIES	1	SLC11A2 (ENSOANG00000002889)	ENSOANG00000046893	CSRNP2 (ENSOANG00000037112)	TFCP2 (ENSOANG00000005721)	POU6F1 (ENSOANG00000043815)	DAZAP2 (ENSOANG00000036184)	ENSOANG00000042307	ENSOANG00000046483	SLC4A8 (ENSOANG00000004862)	SCN8A (ENSOANG00000040816)	ENSOANG00000047791	ASB8 (ENSOANG00000036647) #18	ENSOANG00000047797	PFKM (ENSOANG00000039073) #19	SENP1 (ENSOANG00000006652) #20	COL2A1 (ENSOANG00000042168) #22	VDR (ENSOANG00000040298) #24	HDAC7 (ENSOANG00000001836) #25	ENSOANG00000047354 #26	RAPGEF3 (ENSOANG00000047532) #27	ENDOU (ENSOANG00000047798) #28	ENSOANG00000039571	ENSOANG00000014992	ENSOANG00000014991	ENSOANG00000014990	MCRS1 (ENSOANG00000040524)	KCNH3 (ENSOANG00000039768)	SPATS2 (ENSOANG00000004963)	DNAJC22 (ENSOANG00000002644)	C1QL4 (ENSOANG00000043062)	ENSOANG00000002869
Sauria	ANCESTRAL SPECIES	25	ENSGT00940000158675	ENSGT00940000160528	ENSGT00950000183081.a.a.b	ENSGT00940000158240	ENSGT00940000159609	ENSGT01090000259987.a.a.b	ENSGT00940000156458	ENSGT00940000164283.a	ENSGT00390000012629	ENSGT00390000004990	ENSGT00390000008783	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.a	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00390000009446	ENSGT00940000161293	ENSGT00940000157804	ENSGT00940000160885	ENSGT00940000154129	ENSGT00940000159006	ENSGT00940000157748	ENSGT00390000015021	ENSGT00940000155261	ENSGT00940000157981.b	ENSGT00950000183025.b.b
Lepidosauria	ANCESTRAL SPECIES	134	ENSGT00940000158675	ENSGT00940000160528	ENSGT00950000183081.a.a.b	ENSGT00940000158240	ENSGT00940000159609	ENSGT01090000259987.a.a.b	ENSGT00940000156458	ENSGT00940000164283.a	ENSGT00390000012629	ENSGT00390000004990	ENSGT00390000008783	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.a	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22
Episquamata	ANCESTRAL SPECIES	4	ENSGT00940000160660	ENSGT00950000183081.a.a.b	ENSGT00940000158240	ENSGT00940000159609	ENSGT01090000259987.a.a.b	ENSGT00940000156458	ENSGT00940000164283.a	ENSGT00390000012629	ENSGT00390000014753.r	ENSGT00390000004990	ENSGT00390000008783	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.a	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000164002.g	ENSGT00530000063603.A	ENSGT00390000006679.a	ENSGT01070000253775.a.d.b	ENSGT00940000160422	ENSGT00940000161404	ENSGT00940000156890.a.a	ENSGT00940000159439	ENSGT00980000200282	ENSGT00390000003427	ENSGT00530000064137.a.a	ENSGT00390000006305	ENSGT00550000075017	ENSGT00950000182860.a.b.a	ENSGT00940000160235
Laterata	ANCESTRAL SPECIES	1	ENSGT00940000154118.a.b	ENSGT00940000160660	ENSGT00950000183081.a.a.b	ENSGT00940000158240	ENSGT00940000159609	ENSGT01090000259987.a.a.b	ENSGT00940000156458	ENSGT00940000164283.a	ENSGT00390000012629	ENSGT00390000014753.r	ENSGT00390000004990	ENSGT00390000008783	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000164002.g	ENSGT00530000063603.A	ENSGT00390000006679.a	ENSGT01070000253775.a.d.b	ENSGT00940000160422	ENSGT00940000161404	ENSGT00940000156890.a.a	ENSGT00940000159439	ENSGT00980000200282	ENSGT00390000003427	ENSGT00530000064137.a.a	ENSGT00390000006305	ENSGT00550000075017	ENSGT00950000182860.a.b.a	ENSGT00940000160235
Argentine black and white tegu	MODERN SPECIES	18	ZNF385A (ENSSMRG00000002394)	ENSSMRG00000002302	MYO1A (ENSSMRG00000002216)	CSAD (ENSSMRG00000002201)	ZNF740 (ENSSMRG00000002194)	ITGB7 (ENSSMRG00000002176)	RARG (ENSSMRG00000002154)	ENSSMRG00000001983	MFSD5 (ENSSMRG00000001981)	ENSSMRG00000001973	ESPL1 (ENSSMRG00000001962)	PFDN5 (ENSSMRG00000001953)	ASB8 (ENSSMRG00000001946) #18	PFKM (ENSSMRG00000001905) #19	SENP1 (ENSSMRG00000001872) #20	COL2A1 (ENSSMRG00000001804) #22	ENSSMRG00000001792	OS9 (ENSSMRG00000001755)	B4GALNT1 (ENSSMRG00000001732)	ENSSMRG00000001712	ENSSMRG00000001696	ENSSMRG00000001676	PPP1R1A (ENSSMRG00000001667)	PDE1B (ENSSMRG00000001644)	NCKAP1L (ENSSMRG00000001592)	ENSSMRG00000001577	GTSF1 (ENSSMRG00000001559)	ITGA5 (ENSSMRG00000001507)	ENSSMRG00000001483	KRT18 (ENSSMRG00000001466)	EIF4B (ENSSMRG00000001408)
Common wall lizard	MODERN SPECIES	10	MYO1A (ENSPMRG00000001621)	SOAT2 (ENSPMRG00000001637)	CSAD (ENSPMRG00000001649)	ZNF740 (ENSPMRG00000001660)	ITGB7 (ENSPMRG00000001666)	RARG (ENSPMRG00000001677)	ENSPMRG00000001690	MFSD5 (ENSPMRG00000001700)	ESPL1 (ENSPMRG00000001725)	PFDN5 (ENSPMRG00000001764)	ENSPMRG00000001786	ENSPMRG00000001796	ASB8 (ENSPMRG00000001799) #18	PFKM (ENSPMRG00000001817) #19	SENP1 (ENSPMRG00000001863) #20	COL2A1 (ENSPMRG00000001915) #22	ENSPMRG00000002086	ENSPMRG00000002092	RNF41 (ENSPMRG00000002097)	ENSPMRG00000002103	ENSPMRG00000002113	ENSPMRG00000002127	ENSPMRG00000002131	CS (ENSPMRG00000002136)	COQ10A (ENSPMRG00000002139)	ANKRD52 (ENSPMRG00000002694)	SLC39A5 (ENSPMRG00000002718)	ENSPMRG00000002728	PAN2 (ENSPMRG00000002751)	STAT2 (ENSPMRG00000002779)	ENSPMRG00000002793
Toxicofera	ANCESTRAL SPECIES	19	ENSGT00940000160660	ENSGT00950000183081.a.a.b	ENSGT00940000158240	ENSGT00940000159609	ENSGT01090000259987.a.a.b	ENSGT00940000156458	ENSGT00940000164283.a	ENSGT00390000012629	ENSGT00390000014753.r	ENSGT00390000004990	ENSGT00390000008783	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.a	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000164002.g	ENSGT00530000063603.A	ENSGT00390000006679.a	ENSGT01070000253775.a.d.b	ENSGT00940000160422	ENSGT00940000161404	ENSGT00940000156890.a.a	ENSGT00940000159439	ENSGT00980000200282	ENSGT00390000003427	ENSGT00530000064137.a.a	ENSGT00390000006305	ENSGT00550000075017	ENSGT00950000182860.a.b.a	ENSGT00940000160235
Lizard	MODERN SPECIES	1148								ENSACAG00000005367	ENSACAG00000005466	ENSACAG00000005470	ENSACAG00000043843	ASB8 (ENSACAG00000005535) #18	PFKM (ENSACAG00000005562) #19	SENP1 (ENSACAG00000005981) #20	ENSACAG00000026660	COL2A1 (ENSACAG00000006064) #22	ENSACAG00000006384
Elapidae	ANCESTRAL SPECIES	2	ENSGT00940000160660	ENSGT00950000183081.a.a.b	ENSGT00940000158240	ENSGT00940000159609	ENSGT01090000259987.a.a.b	ENSGT00940000156458	ENSGT00940000164283.a	ENSGT00390000012629	ENSGT00390000014753.r	ENSGT00390000004990	ENSGT00390000008783	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.a	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000164002.g	ENSGT00530000063603.A	ENSGT00390000006679.a	ENSGT01070000253775.a.d.b	ENSGT00940000154766.a.b	ENSGT00940000161404	ENSGT00940000156890.a.a	ENSGT00940000159439	ENSGT00980000200282	ENSGT00390000003427	ENSGT00530000064137.a.a	ENSGT00390000006305	ENSGT00550000075017	ENSGT00950000182860.a.b.a	ENSGT00940000160235
Elapidae_a	ANCESTRAL SPECIES	52			ENSGT00950000183081.a.a.b	ENSGT00940000158240	ENSGT00940000159609	ENSGT01090000259987.a.a.b	ENSGT00940000156458	ENSGT00940000164283.a	ENSGT00390000012629	ENSGT00390000014753.r	ENSGT00390000004990	ENSGT00390000008783	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000164002.g	ENSGT00530000063603.A	ENSGT00390000006679.a	ENSGT01070000253775.a.d.b	ENSGT00940000154766.a.b	ENSGT00940000161404	ENSGT00940000156890.a.a	ENSGT00940000159439	ENSGT00980000200282	ENSGT00390000003427	ENSGT00530000064137.a.a	ENSGT00390000006305	ENSGT00550000075017	ENSGT00950000182860.a.b.a	ENSGT00940000160235
Blue-lipped sea krait	MODERN SPECIES	7623																COL2A1 (ENSLLTG00000005439) #22	ENSLLTG00000005405
tuatara	MODERN SPECIES	497																COL2A1 (ENSSPUG00000006388) #22	TMEM106C (ENSSPUG00000006362) #23	VDR (ENSSPUG00000006324) #24	MYG1 (ENSSPUG00000006303)	AAAS (ENSSPUG00000006283)	SP1 (ENSSPUG00000006229)	PCBP2 (ENSSPUG00000006081)	ENSSPUG00000005922	ENSSPUG00000005915	TARBP2 (ENSSPUG00000005895)	NPFF (ENSSPUG00000005876)	ATF7 (ENSSPUG00000005836)	ENSSPUG00000005824	CALCOCO1 (ENSSPUG00000005381)
Archelosauria	ANCESTRAL SPECIES	26	ENSGT00940000158675	ENSGT00940000160528	ENSGT00950000183081.a.a.b	ENSGT00940000158240	ENSGT00940000159609	ENSGT01090000259987.a.a.b	ENSGT00940000156458	ENSGT00940000164283.a	ENSGT00390000012629	ENSGT00390000004990	ENSGT00390000008783	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.a	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00390000009446	ENSGT00940000161293	ENSGT00940000157804	ENSGT00940000160885	ENSGT00940000154129	ENSGT00940000159006	ENSGT00940000157748	ENSGT00390000015021	ENSGT00940000155261	ENSGT00940000157981.b	ENSGT00950000183025.b.b
Archosauria	ANCESTRAL SPECIES	33	ENSGT00940000155862.a.a.a.a.b.b	ENSGT00940000155862.a.a.a.a.a	ENSGT00940000163886.B.a	ENSGT00940000158675	ENSGT00940000173886	ENSGT00940000158240	ENSGT00940000159609	ENSGT01090000259987.a.a.b	ENSGT00940000156458	ENSGT00390000012629	ENSGT00390000004990	ENSGT00390000008783	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00390000010265	ENSGT00390000009446	ENSGT00940000161293	ENSGT00940000157804	ENSGT00940000160885	ENSGT00940000154129	ENSGT00940000159006	ENSGT00940000157748	ENSGT00390000015021	ENSGT00940000155261	ENSGT00940000157981.b	ENSGT00950000183025.b.b	ENSGT00940000161087
Aves	ANCESTRAL SPECIES	41	ENSGT00940000162738.j.a.b	ENSGT00940000155862.a.a.a.a.b.b.b	ENSGT00940000163886.B.a	ENSGT00940000158675	ENSGT00940000173886	ENSGT00940000158240	ENSGT00940000159609	ENSGT01090000259987.a.a.b	ENSGT00940000156458	ENSGT00390000012629	ENSGT00390000004990	ENSGT00390000008783	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00390000010265	ENSGT00390000009446	ENSGT00940000161293	ENSGT00940000157804	ENSGT00940000160885	ENSGT00940000154129	ENSGT00940000159006	ENSGT00940000157748	ENSGT00940000155261	ENSGT00940000157981.b	ENSGT00940000161087	ENSGT00940000161307	ENSGT00940000160009
Neognathae	ANCESTRAL SPECIES	31			ENSGT00940000163886.B.a	ENSGT00940000158675	ENSGT00940000173886	ENSGT00940000158240	ENSGT00940000159609	ENSGT01090000259987.a.a.b	ENSGT00940000156458	ENSGT00390000012629	ENSGT00390000004990	ENSGT00390000008783	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00390000010265	ENSGT00390000009446	ENSGT00940000161293	ENSGT00940000157804	ENSGT00940000160885	ENSGT00940000154129	ENSGT00940000159006	ENSGT00940000157748	ENSGT00940000155261	ENSGT00940000157981.b	ENSGT00940000161087	ENSGT00940000161307	ENSGT00940000160009
Neognathae_b	ANCESTRAL SPECIES	30											ENSGT00390000004990	ENSGT00390000008783	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00390000010265	ENSGT00390000009446	ENSGT00940000161293	ENSGT00940000157804	ENSGT00940000160885	ENSGT00940000154129	ENSGT00940000159006	ENSGT00940000157748	ENSGT00940000155261	ENSGT00940000157981.b	ENSGT00940000161087	ENSGT00940000161307	ENSGT00940000160009
Passeriformes	ANCESTRAL SPECIES	49												ENSGT00740000115581.e	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00390000010265	ENSGT00390000009446	ENSGT00940000161293	ENSGT00940000157804	ENSGT00940000160885	ENSGT00940000154129	ENSGT00940000159006	ENSGT00940000157748	ENSGT00940000155261	ENSGT00940000157981.b	ENSGT00940000161087	ENSGT00940000161307	ENSGT00940000160009
Great tit	MODERN SPECIES	276												ENSPMJG00000000368	ASB8 (ENSPMJG00000000372) #18	PFKM (ENSPMJG00000000399) #19	SENP1 (ENSPMJG00000000428) #20	COL2A1 (ENSPMJG00000000506) #22	TMEM106C (ENSPMJG00000000589) #23	VDR (ENSPMJG00000000611) #24	MYG1 (ENSPMJG00000000630)	AAAS (ENSPMJG00000000640)	SP7 (ENSPMJG00000000660)	SP1 (ENSPMJG00000000695)	AMHR2 (ENSPMJG00000000705)	PCBP2 (ENSPMJG00000000734)	MAP3K12 (ENSPMJG00000000797)	ENSPMJG00000000806	ATF7 (ENSPMJG00000000810)	ENSPMJG00000000824	HOXC13 (ENSPMJG00000000827)
Passeriformes_d	ANCESTRAL SPECIES	45												ENSGT00740000115581.e	ENSGT00940000159366 #18	ENSGT00940000155440.d.l #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473.h #24	ENSGT00390000010265	ENSGT00390000009446	ENSGT00940000161293	ENSGT00940000157804	ENSGT00940000160885	ENSGT00940000154129	ENSGT00940000159006	ENSGT00940000157748	ENSGT00940000155261	ENSGT00940000161087	ENSGT00940000161307	ENSGT00940000160009	ENSGT00940000160855
Passeriformes_g	ANCESTRAL SPECIES	56												ENSGT00740000115581.e	ENSGT00940000159366 #18	ENSGT00940000155440.d.l #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473.h #24	ENSGT00390000010265	ENSGT00390000009446	ENSGT00940000161293	ENSGT00940000157804	ENSGT00940000160885	ENSGT00940000154129	ENSGT00940000159006	ENSGT00940000157748	ENSGT00940000155261	ENSGT00940000161087	ENSGT00940000161307	ENSGT00940000160009	ENSGT00940000160855
Passeroidea	ANCESTRAL SPECIES	58												ENSGT00740000115581.e	ENSGT00940000159366 #18	ENSGT00940000155440.d.l #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473.h #24	ENSGT00390000010265	ENSGT00390000009446	ENSGT00940000161293	ENSGT00940000157804	ENSGT00940000160885	ENSGT00940000154129	ENSGT00940000159006	ENSGT00940000157748	ENSGT00940000155261	ENSGT00940000161087	ENSGT00940000161307	ENSGT00940000160009	ENSGT00940000160855
Zebra finch	MODERN SPECIES	22	ENSTGUG00000025779	ENSTGUG00000028758	ENSTGUG00000018826	ENSTGUG00000029556	ENSTGUG00000003382	ATF1 (ENSTGUG00000027804)	ENSTGUG00000003391	ENSTGUG00000003412	ENSTGUG00000003479	ENSTGUG00000021283	ENSTGUG00000019886	ENSTGUG00000021259	ENSTGUG00000029058 #18	ENSTGUG00000024525 #19	ENSTGUG00000029376 #20	ENSTGUG00000028804 #22	ENSTGUG00000027589 #23	ENSTGUG00000029269 #24	ENSTGUG00000025076	ENSTGUG00000023338	ENSTGUG00000028639	ENSTGUG00000020153	ENSTGUG00000021232	ENSTGUG00000016232	ENSTGUG00000023166	ENSTGUG00000023957	ENSTGUG00000025685	ENSTGUG00000019351	ENSTGUG00000018823	HOXC12 (ENSTGUG00000016959)	ENSTGUG00000029253
Neognathae_c	ANCESTRAL SPECIES	34											ENSGT00390000004990	ENSGT00390000008783	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00390000010265	ENSGT00390000009446	ENSGT00940000161293	ENSGT00940000157804	ENSGT00940000160885	ENSGT00940000154129	ENSGT00940000159006	ENSGT00940000157748	ENSGT00940000155261	ENSGT00940000157981.b	ENSGT00940000161087	ENSGT00940000161307	ENSGT00940000160009
Kakapo	MODERN SPECIES	15	ENSSHBG00005020865	ENSSHBG00005020855	ENSSHBG00005020848	ENSSHBG00005020833	ENSSHBG00005020765	ENSSHBG00005020743	ENSSHBG00005020735	ENSSHBG00005020731	BCDIN3D (ENSSHBG00005020729)	ESPL1 (ENSSHBG00005020705)	PFDN5 (ENSSHBG00005020657)	ENSSHBG00005020652	ASB8 (ENSSHBG00005020645) #18	PFKM (ENSSHBG00005020639) #19	SENP1 (ENSSHBG00005020604) #20	COL2A1 (ENSSHBG00005020568) #22	TMEM106C (ENSSHBG00005020552) #23	VDR (ENSSHBG00005020542) #24	MYG1 (ENSSHBG00005020536)	AAAS (ENSSHBG00005020532)	SP7 (ENSSHBG00005020523)	SP1 (ENSSHBG00005020520)	AMHR2 (ENSSHBG00005020511)	PCBP2 (ENSSHBG00005020490)	ENSSHBG00005020472	ENSSHBG00005020466	MAP3K12 (ENSSHBG00005020459)	TARBP2 (ENSSHBG00005020456)	SLC4A8 (ENSSHBG00005020437)	GALNT6 (ENSSHBG00005020420)	ENSSHBG00005020411
Golden eagle	MODERN SPECIES	6	ENSACCG00020012208	CD63 (ENSACCG00020012188)	RDH5 (ENSACCG00020012167)	BLOC1S1 (ENSACCG00020012147)	ITGA7 (ENSACCG00020012060)	MCRS1 (ENSACCG00020011760)	KCNH3 (ENSACCG00020011660)	SPATS2 (ENSACCG00020011580)	DNAJC22 (ENSACCG00020011560)	C1QL4 (ENSACCG00020011541)	PFDN5 (ENSACCG00020011466)	ASB8 (ENSACCG00020010239) #18	PFKM (ENSACCG00020010225) #19	ENSACCG00020010210	SENP1 (ENSACCG00020010196) #20	COL2A1 (ENSACCG00020010155) #22	TMEM106C (ENSACCG00020010101) #23	VDR (ENSACCG00020010088) #24	MYG1 (ENSACCG00020010078)	AAAS (ENSACCG00020010065)	ENSACCG00020010022	SP1 (ENSACCG00020009967)	AMHR2 (ENSACCG00020009950)	PCBP2 (ENSACCG00020009932)	MAP3K12 (ENSACCG00020009899)	ENSACCG00020009882	ENSACCG00020009866	ENSACCG00020009852	ATF7 (ENSACCG00020009825)	ENSACCG00020009790	HOXC13 (ENSACCG00020009769)
Galloanserae	ANCESTRAL SPECIES	37			ENSGT00940000161535	ENSGT00940000158675	ENSGT00940000173886	ENSGT00940000158240	ENSGT00940000159609	ENSGT01090000259987.a.a.b	ENSGT00940000156458	ENSGT00390000012629	ENSGT00390000004990	ENSGT00390000008783	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00390000010265	ENSGT00390000009446	ENSGT00940000161293	ENSGT00940000157804	ENSGT00940000160885	ENSGT00940000154129	ENSGT00940000159006	ENSGT00940000157748	ENSGT00940000155261	ENSGT00940000157981.b	ENSGT00940000161087	ENSGT00940000161307	ENSGT00940000160009
Anatidae	ANCESTRAL SPECIES	199																ENSGT00940000155224 #22	ENSGT00940000161281 #23
Pink-footed goose	MODERN SPECIES	535																COL2A1 (ENSABRG00000013919) #22	TMEM106C (ENSABRG00000013893) #23	VDR (ENSABRG00000013874) #24	MYG1 (ENSABRG00000013840)	AAAS (ENSABRG00000013804)	SP7 (ENSABRG00000013768)
Duck	MODERN SPECIES	3213																ENSAPLG00000004830 #22	TMEM106C (ENSAPLG00000022157) #23
Phasianidae	ANCESTRAL SPECIES	25			ENSGT00940000161535	ENSGT00940000158675	ENSGT00940000173886	ENSGT00390000012629	ENSGT00940000156458	ENSGT01090000259987.a.a.b	ENSGT00940000159609	ENSGT00940000158240	ENSGT00390000004990	ENSGT00390000008783	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00390000010265	ENSGT00390000009446	ENSGT00940000157804	ENSGT00940000160885	ENSGT00940000154129	ENSGT00940000159006	ENSGT00940000157748	ENSGT00940000155261	ENSGT00940000157981.b	ENSGT00940000161087	ENSGT00940000161307	ENSGT00940000160009	ENSGT00940000160855
Japanese quail	MODERN SPECIES	43		ENSCJPG00005007963	SPRYD3 (ENSCJPG00005007962)	ENSCJPG00005007961	MFSD5 (ENSCJPG00005007960)	RARG (ENSCJPG00005007958)	ENSCJPG00005007957	ZNF740 (ENSCJPG00005007956)	CSAD (ENSCJPG00005007955)	ENSCJPG00005007954	ESPL1 (ENSCJPG00005007953)	ENSCJPG00005007952	ASB8 (ENSCJPG00005007951) #18	PFKM (ENSCJPG00005007950) #19	SENP1 (ENSCJPG00005007946) #20	COL2A1 (ENSCJPG00005007932) #22	TMEM106C (ENSCJPG00005007927) #23	VDR (ENSCJPG00005007922) #24	MYG1 (ENSCJPG00005007919)	AAAS (ENSCJPG00005007913)	ENSCJPG00005007897	SP1 (ENSCJPG00005007894)	PCBP2 (ENSCJPG00005007888)	MAP3K12 (ENSCJPG00005007718)	ENSCJPG00005007716	ENSCJPG00005007715	ENSCJPG00005007713	ATF7 (ENSCJPG00005007711)	ENSCJPG00005007709	HOXC13 (ENSCJPG00005007704)	HOXC11 (ENSCJPG00005007703)
Cryptodira	ANCESTRAL SPECIES	25	ENSGT00940000158675	ENSGT00940000160528	ENSGT00950000183081.a.a.b	ENSGT00940000158240	ENSGT00940000159609	ENSGT01090000259987.a.a.b	ENSGT00940000156458	ENSGT00940000164283.a	ENSGT00390000012629	ENSGT00390000004990	ENSGT00390000008783	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.a	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00390000009446	ENSGT00940000161293	ENSGT00940000157804	ENSGT00940000160885	ENSGT00940000154129	ENSGT00940000159006	ENSGT00940000157748	ENSGT00390000015021	ENSGT00940000155261	ENSGT00940000157981.b	ENSGT00950000183025.b.b
Testudinoidea	ANCESTRAL SPECIES	21	ENSGT00940000158675	ENSGT00940000160528	ENSGT00950000183081.a.a.b	ENSGT00940000158240	ENSGT00940000159609	ENSGT01090000259987.a.a.b	ENSGT00940000156458	ENSGT00940000164283.a	ENSGT00390000012629	ENSGT00390000004990	ENSGT00390000008783	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.a	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00390000009446	ENSGT00940000161293	ENSGT00940000157804	ENSGT00940000160885	ENSGT00940000154129	ENSGT00940000159006	ENSGT00940000157748	ENSGT00390000015021	ENSGT00940000155261	ENSGT00940000157981.b	ENSGT00950000183025.b.b
Emydidae	ANCESTRAL SPECIES	34	ENSGT00940000158675	ENSGT00940000160528	ENSGT00950000183081.a.a.b	ENSGT00940000158240	ENSGT00940000159609	ENSGT01090000259987.a.a.b	ENSGT00940000156458	ENSGT00940000164283.a	ENSGT00390000012629	ENSGT00390000004990	ENSGT00390000008783	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.a	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00390000009446	ENSGT00940000161293	ENSGT00940000157804	ENSGT00940000160885	ENSGT00940000154129	ENSGT00940000159006	ENSGT00940000157748	ENSGT00390000015021	ENSGT00940000155261	ENSGT00940000157981.b	ENSGT00950000183025.b.b
painted turtle	MODERN SPECIES	721	SOAT2 (ENSCPBG00000019678)	CSAD (ENSCPBG00000019689)	ZNF740 (ENSCPBG00000019693)	ENSCPBG00000019694	ENSCPBG00000019697	RARG (ENSCPBG00000019701)	ENSCPBG00000019709	MFSD5 (ENSCPBG00000019716)	ESPL1 (ENSCPBG00000019722)	PFDN5 (ENSCPBG00000019727)	ENSCPBG00000019729	ENSCPBG00000019731	ASB8 (ENSCPBG00000019733) #18	PFKM (ENSCPBG00000019737) #19	SENP1 (ENSCPBG00000019758) #20	COL2A1 (ENSCPBG00000019770) #22	TMEM106C (ENSCPBG00000019774) #23	ENSCPBG00000019779	GATA3 (ENSCPBG00000019782)	TAF3 (ENSCPBG00000019787)	ENSCPBG00000019792	ATP5F1C (ENSCPBG00000019796)	KIN (ENSCPBG00000019799)	ITIH2 (ENSCPBG00000019809)	ITIH5 (ENSCPBG00000019818)	ENSCPBG00000019820	SFMBT2 (ENSCPBG00000019821)	PRKCQ (ENSCPBG00000019826)	PFKFB3 (ENSCPBG00000019829)	RBM17 (ENSCPBG00000019836)	ENSCPBG00000019839
Three-toed box turtle	MODERN SPECIES	383	SPRYD3 (ENSTMTG00000009839)	IGFBP6 (ENSTMTG00000009683)	SOAT2 (ENSTMTG00000009466)	CSAD (ENSTMTG00000009393)	ZNF740 (ENSTMTG00000009368)	ITGB7 (ENSTMTG00000008994)	RARG (ENSTMTG00000008939)	ENSTMTG00000008909	MFSD5 (ENSTMTG00000008904)	ESPL1 (ENSTMTG00000008835)	PFDN5 (ENSTMTG00000008802)	ENSTMTG00000008782	ASB8 (ENSTMTG00000008769) #18	PFKM (ENSTMTG00000005865) #19	SENP1 (ENSTMTG00000005570) #20	COL2A1 (ENSTMTG00000005481) #22	TMEM106C (ENSTMTG00000005459) #23	VDR (ENSTMTG00000005441) #24	ENSTMTG00000005427	AAAS (ENSTMTG00000005384)	SP7 (ENSTMTG00000005372)	SP1 (ENSTMTG00000005365)	AMHR2 (ENSTMTG00000005331)	PCBP2 (ENSTMTG00000005243)	MAP3K12 (ENSTMTG00000005204)	ENSTMTG00000005186	TARBP2 (ENSTMTG00000005163)	ATF7 (ENSTMTG00000005026)	ENSTMTG00000004989	CALCOCO1 (ENSTMTG00000004927)	HOXC13 (ENSTMTG00000004896)
Testudinidae	ANCESTRAL SPECIES	25	ENSGT00950000183081.a.a.b	ENSGT00940000158240	ENSGT00940000159609	ENSGT01090000259987.a.a.b	ENSGT00940000156458	ENSGT00940000164283.a	ENSGT00390000012629	ENSGT00390000004990	ENSGT00390000008783	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.a	ENSGT00940000162179.f.m.a	ENSGT00940000159366 #18	ENSGT00940000155440.d #19	ENSGT01000000221284	ENSGT00940000155489.b #20	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00390000009446	ENSGT00940000161293	ENSGT00940000157804	ENSGT00940000160885	ENSGT00940000154129	ENSGT00940000159006	ENSGT00940000157748	ENSGT00390000015021	ENSGT00940000155261	ENSGT00940000157981.b	ENSGT00950000183025.b.b
Goode s thornscrub tortoise	MODERN SPECIES	17	CSAD (ENSGEVG00005012168)	ZNF740 (ENSGEVG00005012126)	ITGB7 (ENSGEVG00005012083)	RARG (ENSGEVG00005012046)	ENSGEVG00005011857	MFSD5 (ENSGEVG00005011821)	ESPL1 (ENSGEVG00005011575)	PFDN5 (ENSGEVG00005011533)	ENSGEVG00005011453	ENSGEVG00005011432	ENSGEVG00005011392	ASB8 (ENSGEVG00005011375) #18	PFKM (ENSGEVG00005010891) #19	ENSGEVG00005010778	SENP1 (ENSGEVG00005010700) #20	COL2A1 (ENSGEVG00005009962) #22	TMEM106C (ENSGEVG00005009885) #23	VDR (ENSGEVG00005009445) #24	MYG1 (ENSGEVG00005009350)	ENSGEVG00005009307	AAAS (ENSGEVG00005009257)	SP7 (ENSGEVG00005009213)	SP1 (ENSGEVG00005009182)	ENSGEVG00005009141	ENSGEVG00005009118	PCBP2 (ENSGEVG00005008987)	MAP3K12 (ENSGEVG00005004107)	ENSGEVG00005004089	TARBP2 (ENSGEVG00005004070)	NPFF (ENSGEVG00005004056)	ATF7 (ENSGEVG00005004038)
Abingdon island giant tortoise	MODERN SPECIES	1188	SOAT2 (ENSCABG00000005347)	CSAD (ENSCABG00000005342)	ZNF740 (ENSCABG00000005341)	ITGB7 (ENSCABG00000005048)	RARG (ENSCABG00000005035)	ENSCABG00000005034	MFSD5 (ENSCABG00000005033)	ESPL1 (ENSCABG00000005028)	PFDN5 (ENSCABG00000005023)	ENSCABG00000005021	ENSCABG00000005019	ASB8 (ENSCABG00000005018) #18	PFKM (ENSCABG00000005006) #19	ENSCABG00000005005	SENP1 (ENSCABG00000004838) #20	COL2A1 (ENSCABG00000004791) #22	TMEM106C (ENSCABG00000004784) #23	VDR (ENSCABG00000004778) #24	MYG1 (ENSCABG00000004777)	AAAS (ENSCABG00000004775)	SP7 (ENSCABG00000004773)	SP1 (ENSCABG00000004772)	AMHR2 (ENSCABG00000004771)	PCBP2 (ENSCABG00000004763)	MAP3K12 (ENSCABG00000004759)	ENSCABG00000004757	TARBP2 (ENSCABG00000004756)	ENSCABG00000004755	ATF7 (ENSCABG00000004698)	ENSCABG00000004693	ENSCABG00000004691
Chinese turtle	MODERN SPECIES	2238							MFSD5 (ENSPSIG00000014686)	ENSPSIG00000014799	ENSPSIG00000014806	ESPL1 (ENSPSIG00000015544)	PFDN5 (ENSPSIG00000006378)	ENSPSIG00000006756	ASB8 (ENSPSIG00000007270) #18	PFKM (ENSPSIG00000008414) #19	SENP1 (ENSPSIG00000012949) #20	COL2A1 (ENSPSIG00000014269) #22	TMEM106C (ENSPSIG00000017930) #23	VDR (ENSPSIG00000018108) #24	AAAS (ENSPSIG00000018186)	SP7 (ENSPSIG00000001445)	SP1 (ENSPSIG00000007013)	PCBP2 (ENSPSIG00000007484)
Anura	ANCESTRAL SPECIES	87	ENSGT00940000160845	ENSGT00940000157422	ENSGT00960000187237	ENSGT00940000161971	ENSGT00940000156263	ENSGT00940000165418	ENSGT00940000158200	ENSGT00950000182997.a.b.b.b	ENSGT00940000154409	ENSGT00940000155440.d #19	ENSGT00940000155489.b #20	ENSGT01100000263494.a.b.a.c.a.a.b	ENSGT01100000263572	ENSGT01030000234669.A	ENSGT00390000014159	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00940000162831	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00940000161744	ENSGT00940000160217
Frog	MODERN SPECIES	2	scn8a (ENSXETG00000008958)	ENSXETG00000048558	mettl7a.2 (ENSXETG00000007300)	atf1 (ENSXETG00000007299)	ENSXETG00000007266	dip2b (ENSXETG00000007284)	larp4 (ENSXETG00000007283)	pfkm (ENSXETG00000007279) #19	senp1 (ENSXETG00000044641) #20	ENSXETG00000040243	ENSXETG00000035648	or5f1l1.3 (ENSXETG00000038137)	ENSXETG00000007274	ENSXETG00000033046	gtf2h4 (ENSXETG00000007263)	col2a1 (ENSXETG00000010655) #22	tmem106c (ENSXETG00000010657) #23	vdr (ENSXETG00000010658) #24	hdac7 (ENSXETG00000010661) #25	twist2 (ENSXETG00000045674)	ENSXETG00000046937	slc48a1 (ENSXETG00000027418) #26	rapgef3 (ENSXETG00000004292) #27	birc5 (ENSXETG00000004294)	neurod4 (ENSXETG00000004295)	ENSXETG00000043097	endou (ENSXETG00000004296) #28	ppp1r1a (ENSXETG00000004297)	ENSXETG00000041259	pde1b (ENSXETG00000004298)	nckap1l (ENSXETG00000004299)
Leishan spiny toad	MODERN SPECIES	5	ENSLLEG00000003246	ENSLLEG00000003254	ATF1 (ENSLLEG00000003264)	DIP2B (ENSLLEG00000003308)	ENSLLEG00000003468	LARP4 (ENSLLEG00000003487)	PFKM (ENSLLEG00000003561) #19	ENSLLEG00000003693	SENP1 (ENSLLEG00000003704) #20	ENSLLEG00000003732	ENSLLEG00000003746	ENSLLEG00000003764	ENSLLEG00000003775	GTF2H4 (ENSLLEG00000003793)	ENSLLEG00000003814	COL2A1 (ENSLLEG00000003821) #22	ENSLLEG00000003826	ENSLLEG00000003833 #23	ENSLLEG00000003846	VDR (ENSLLEG00000003855) #24	ENSLLEG00000004658	ENSLLEG00000004668	HDAC7 (ENSLLEG00000004682) #25	ENSLLEG00000004697	ENSLLEG00000004703	SLC48A1 (ENSLLEG00000004711) #26	RAPGEF3 (ENSLLEG00000004729) #27	ENSLLEG00000004748	NEUROD4 (ENSLLEG00000004758)	ENDOU (ENSLLEG00000004771) #28	ENSLLEG00000004792
Coelacanth	MODERN SPECIES	224	ENSLACG00000019054	GLI1 (ENSLACG00000019059)	R3HDM2 (ENSLACG00000019064)	STAC3 (ENSLACG00000019066)	NDUFA4L2 (ENSLACG00000019074)	SHMT2 (ENSLACG00000019075)	NXPH4 (ENSLACG00000019079)	ENSLACG00000019081	DIP2B (ENSLACG00000019082)	LARP4 (ENSLACG00000019090)	ASB8 (ENSLACG00000019093) #18	PFKM (ENSLACG00000019094) #19	SENP1 (ENSLACG00000019096) #20	ENSLACG00000019098	ENSLACG00000019099	COL2A1 (ENSLACG00000019101) #22	TMEM106C (ENSLACG00000019102) #23	VDR (ENSLACG00000019104) #24	HDAC7 (ENSLACG00000019112) #25	ENSLACG00000019113	ENSLACG00000019114 #27	TMBIM6 (ENSLACG00000019115)	FMNL3 (ENSLACG00000019116)	ENSLACG00000019117	ACVR1B (ENSLACG00000019118)	TAMALIN (ENSLACG00000019119)	NR4A1 (ENSLACG00000019120)	rprm3 (ENSLACG00000019121)	PRPF40B (ENSLACG00000019122)
Actinopterygii	ANCESTRAL SPECIES	95	ENSGT00530000063686.b	ENSGT00940000156497	ENSGT00940000159523	ENSGT00950000183192.a.b	ENSGT00940000158599	ENSGT00940000156292	ENSGT00940000163949	ENSGT00940000156832	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000160712	ENSGT00390000016619.b	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00940000158061
Reedfish	MODERN SPECIES	11	smarcd1 (ENSECRG00000005702)	ENSECRG00000005509	racgap1 (ENSECRG00000005411)	ENSECRG00000005395	bin2a (ENSECRG00000005386)	ENSECRG00000005376	dazap2 (ENSECRG00000005367)	pou6f1 (ENSECRG00000005347)	TFCP2 (ENSECRG00000005239)	CSRNP2 (ENSECRG00000005167)	ENSECRG00000005150	PPP1R1A (ENSECRG00000005136)	ENSECRG00000005124	ENSECRG00000005108	nckap1l (ENSECRG00000005090)	col2a1b (ENSECRG00000005052) #22	tmem106c (ENSECRG00000005031) #23	ENSECRG00000005020	aaas (ENSECRG00000005002)	ENSECRG00000004987	myg1 (ENSECRG00000004979)	ENSECRG00000004973	ENSECRG00000004965	ENSECRG00000004959	soat2 (ENSECRG00000004949)	igsf8 (ENSECRG00000004935)	ENSECRG00000004927	tarbp2 (ENSECRG00000004921)	ENSECRG00000004913	sp7 (ENSECRG00000004901)	sp1 (ENSECRG00000004889)
Neopterygii	ANCESTRAL SPECIES	71							ENSGT00940000159780	ENSGT00390000010463.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000160712	ENSGT00390000016619.b	ENSGT00940000155224 #22	ENSGT00940000161281 #23	ENSGT00940000155473 #24	ENSGT00940000159065 #25	ENSGT00390000002307 #26	ENSGT00940000159931 #27	ENSGT00940000158061	ENSGT00950000183072.b.a	ENSGT00940000157629	ENSGT00940000160106	ENSGT00390000000685	ENSGT00610000087489	ENSGT00950000182882.A.a	ENSGT00390000008169	ENSGT00940000154610.e.b	ENSGT00940000154657.C
Spotted gar	MODERN SPECIES	670	pou6f1 (ENSLOCG00000004801)	TFCP2 (ENSLOCG00000004816)	CSRNP2 (ENSLOCG00000004834)	itga5 (ENSLOCG00000004844)	CELA1 (ENSLOCG00000004871)	spryd4 (ENSLOCG00000004897)	gls2b (ENSLOCG00000004907)	rdh5 (ENSLOCG00000004925)	bloc1s1 (ENSLOCG00000004941)	ITGA7 (ENSLOCG00000004959)	npffl (ENSLOCG00000004987)	PPP1R1A (ENSLOCG00000005001)	PDE1B (ENSLOCG00000005028)	nckap1l (ENSLOCG00000005047)	ENSLOCG00000005096	col2a1b (ENSLOCG00000005115) #22	tmem106c (ENSLOCG00000005136) #23	ENSLOCG00000005157	ENSLOCG00000005174	vdrb (ENSLOCG00000005194) #24	HDAC7 (ENSLOCG00000005209) #25	twist3 (ENSLOCG00000018198)	slc48a1b (ENSLOCG00000005231) #26	RAPGEF3 (ENSLOCG00000005254) #27	ENSLOCG00000005277	ENSLOCG00000005292	ENSLOCG00000005307	smarcd1 (ENSLOCG00000005337)	gpd1b (ENSLOCG00000005357)	cers5 (ENSLOCG00000005366)	ENSLOCG00000018200
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	1	ENSGT01090000260194	ENSGT00390000002190	ENSGT01030000234515.a.a.a	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000160712	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00990000209831	ENSGT01060000252161	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b
Clupeocephala	ANCESTRAL SPECIES	7	ENSGT01090000260194	ENSGT00390000002190	ENSGT01030000234515.a.a.a	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT01030000234528.B.b.a.a.a.c.a	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000160712	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00990000209831	ENSGT01060000252161	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00950000183208.B.f.a
Otomorpha	ANCESTRAL SPECIES	89	ENSGT00950000182848.c.b.a.b	ENSGT00390000010923	ENSGT00940000160402	ENSGT00950000182978.A.a.b.b	ENSGT00940000154347.a	ENSGT00530000063853.a.a.a	ENSGT00400000022103.b	ENSGT00950000182844.a.a.a	ENSGT00890000139515	ENSGT00940000159236	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT01060000252161	ENSGT00940000160885	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00530000064137.a.a
Clupeiformes	ANCESTRAL SPECIES	72	ENSGT00950000182848.c.b.a.b	ENSGT00390000010923	ENSGT00940000160402	ENSGT00950000182978.A.a.b.b	ENSGT00940000154347.a	ENSGT00530000063853.a.a.a	ENSGT00400000022103.b	ENSGT00950000182844.a.a.a	ENSGT00890000139515	ENSGT00940000159236	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000160712	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000160885	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00530000064137.a.a	ENSGT00390000006305
Denticle herring	MODERN SPECIES	3	CDH22 (ENSDCDG00000028189)	tfap2c (ENSDCDG00000028240)	rtf2 (ENSDCDG00000028243)	GCNT7 (ENSDCDG00000028245)	eya2 (ENSDCDG00000028256)	sys1 (ENSDCDG00000028576)	ENSDCDG00000028578	ENSDCDG00000028581	arfgap1 (ENSDCDG00000028596)	ELMO2 (ENSDCDG00000028642)	ITGA7 (ENSDCDG00000029265)	ENSDCDG00000029361	PPP1R1A (ENSDCDG00000029364)	ENSDCDG00000029430	nckap1l (ENSDCDG00000031424)	col2a1b (ENSDCDG00000031553) #22	myg1 (ENSDCDG00000032705)	MAP3K12 (ENSDCDG00000032712)	PCBP2 (ENSDCDG00000032895)	AMHR2 (ENSDCDG00000032912)	sp1 (ENSDCDG00000032919)	ENSDCDG00000032921	tarbp2 (ENSDCDG00000032927)	sp7 (ENSDCDG00000032929)	igsf8 (ENSDCDG00000032932)	soat2 (ENSDCDG00000032935)	KIF5A (ENSDCDG00000032977)	ENSDCDG00000034007	dctn2 (ENSDCDG00000034020)	ENSDCDG00000034072	ddit3 (ENSDCDG00000034074)
Atlantic herring	MODERN SPECIES	21	epha2a (ENSCHAG00000027782)	ENSCHAG00000027792	ENSCHAG00000027795	ENSCHAG00000027799	sumf1 (ENSCHAG00000027805)	ENSCHAG00000027829	pfkfb4b (ENSCHAG00000027850)	ENSCHAG00000027863	arfgap1 (ENSCHAG00000027865)	ELMO2 (ENSCHAG00000027870)	ITGA7 (ENSCHAG00000027871)	npffl (ENSCHAG00000027872)	PPP1R1A (ENSCHAG00000027873)	PDE1B (ENSCHAG00000027874)	nckap1l (ENSCHAG00000027875)	col2a1b (ENSCHAG00000027876) #22	ENSCHAG00000027877	myg1 (ENSCHAG00000027878)	MAP3K12 (ENSCHAG00000027879)	PCBP2 (ENSCHAG00000000987)	AMHR2 (ENSCHAG00000001324)	ENSCHAG00000001360	ENSCHAG00000001378	apobec2a (ENSCHAG00000001393)	ELF3 (ENSCHAG00000001424)	GPR37L1 (ENSCHAG00000001441)	arl8a (ENSCHAG00000001462)	zgc:162255 (ENSCHAG00000001515)	znf76 (ENSCHAG00000001545)	btg2 (ENSCHAG00000001558)	ENSCHAG00000001577
Otophysi	ANCESTRAL SPECIES	367																ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT01060000252161	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804
Cyprinoidei	ANCESTRAL SPECIES	317																ENSGT00940000155224.c.a #22	ENSGT00390000010265	ENSGT00940000157804
Cyprininae	ANCESTRAL SPECIES	1622																ENSGT00940000155224.c.a #22	ENSGT00390000010265.a
Goldfish	MODERN SPECIES	52	LRP1 (ENSCARG00000060823)	atp2b2 (ENSCARG00000054003)	SLC6A11 (ENSCARG00000049911)	slc6a1b (ENSCARG00000049707)	HRH1 (ENSCARG00000049702)	vgll4b (ENSCARG00000049678)	ENSCARG00000049673	syn2b (ENSCARG00000049357)	ENSCARG00000049341	ENSCARG00000049249	MKRN2OS (ENSCARG00000049228)	ENSCARG00000049212	cnbpb (ENSCARG00000048701)	nuf2 (ENSCARG00000048607)	ENSCARG00000048583	col2a1b (ENSCARG00000048371) #22	ENSCARG00000048338	myg1 (ENSCARG00000048256)	ENSCARG00000048251	sp1 (ENSCARG00000048237)
Cyprininae_a	ANCESTRAL SPECIES	535							ENSGT00940000159798.g.a.a	ENSGT00940000159798.h.a.a	ENSGT00940000167517.c	ENSGT00940000158273.a	ENSGT00390000003839.a	ENSGT00390000003839.b	ENSGT00940000156084.s.a	ENSGT00950000183041.A.a.b.e.b	ENSGT00390000004199	ENSGT00940000155224.c.a #22	ENSGT00390000010265.a	ENSGT00390000010265.b	ENSGT00940000157804.l
Common carp reference	MODERN SPECIES	13	SLC6A11 (ENSCCRG00000064612)	slc6a1b (ENSCCRG00000066274)	ATG7 (ENSCCRG00000069201)	vgll4b (ENSCCRG00000081211)	ENSCCRG00000065400	ENSCCRG00000080358	TIMP4 (ENSCCRG00000058279)	ENSCCRG00000075001	ENSCCRG00000054276	TIMP4 (ENSCCRG00000067355)	ENSCCRG00000028460	MKRN2OS (ENSCCRG00000080573)	ENSCCRG00000030779	ENSCCRG00000021288	ENSCCRG00000048194	ENSCCRG00000059611 #22	ENSCCRG00000018254	ENSCCRG00000058306	ENSCCRG00000041693
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	1413															nuf2 (ENSSGRG00000019396)	col2a1b (ENSSGRG00000019404) #22	myg1 (ENSSGRG00000019649)	ENSSGRG00000019650	ENSSGRG00000019651	ENSSGRG00000019652
Golden-line barbel	MODERN SPECIES	2067																col2a1b (ENSSGRG00000011337) #22	myg1 (ENSSGRG00000011326)
Zebrafish	MODERN SPECIES	2	pdrg1 (ENSDARG00000045017)	cyp27b1 (ENSDARG00000045015)	POC1A (ENSDARG00000078533)	mettl1 (ENSDARG00000076518)	slc11a2 (ENSDARG00000024295)	npffl (ENSDARG00000045016)	alas1 (ENSDARG00000021059)	dusp7 (ENSDARG00000101413)	avil (ENSDARG00000059342)	TMBIM6 (ENSDARG00000077934)	nckap1l (ENSDARG00000075748)	cdk4 (ENSDARG00000087937)	arfgap1 (ENSDARG00000101616)	elmo2 (ENSDARG00000063527)	ENSDARG00000109859	col2a1b (ENSDARG00000011407) #22	sp1 (ENSDARG00000088347)	ENSDARG00000086216	myg1 (ENSDARG00000069977)
Characiphysae	ANCESTRAL SPECIES	228																ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT01060000252161	ENSGT00940000160885	ENSGT00940000167008
Characiphysae_b	ANCESTRAL SPECIES	26	ENSGT01030000234549.a.a.a.b	ENSGT01030000234549.a.a.a.a.a.a	ENSGT00940000161383.d.a	ENSGT00940000166196	ENSGT00940000166313.a	ENSGT00530000063631.b.n.a	ENSGT00940000164411	ENSGT00940000160486.d.d	ENSGT00940000158405	ENSGT00950000182893.a.a.b.b	ENSGT00940000155006.e.a	ENSGT00390000018123.b	ENSGT00980000199461	ENSGT00940000154681.b.d	ENSGT00940000160318.c.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT01060000252161	ENSGT00940000160885	ENSGT00940000167008	ENSGT00950000182872.f.a.a.a.b	ENSGT00940000156477.d.a	ENSGT00940000164502.a.b	ENSGT00940000166926	ENSGT00390000017780.f	ENSGT00940000159825.a.b	ENSGT00730000111186	ENSGT00390000008224
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	263		KALRN (ENSEEEG00000024349)	ENSEEEG00000024339	ubr3 (ENSEEEG00000024324)	MYO3B (ENSEEEG00000024320)	sp5a (ENSEEEG00000024317)	ENSEEEG00000024314	tlk1a (ENSEEEG00000024291)	prickle2b (ENSEEEG00000024286)	slc2a9l1 (ENSEEEG00000024285)	sp1 (ENSEEEG00000024284)	nckap1l (ENSEEEG00000024244)	ENSEEEG00000024224	ENSEEEG00000024215	npffl (ENSEEEG00000024213)	col2a1b (ENSEEEG00000024207) #22	ENSEEEG00000024205	USP48 (ENSEEEG00000024198)	ENSEEEG00000024193	chchd4a (ENSEEEG00000024192)	ENSEEEG00000024189
Electric eel	MODERN SPECIES	251	si:ch211-198n5.11 (ENSEEEG00000006614)	rpe65b (ENSEEEG00000006617)	depdc1a (ENSEEEG00000006652)	ENSEEEG00000006676	ENSEEEG00000006677	aldh9a1a.1 (ENSEEEG00000006687)	tmco1 (ENSEEEG00000006730)	uck2a (ENSEEEG00000006732)	magoh (ENSEEEG00000006749)	ENSEEEG00000006750	cpt2 (ENSEEEG00000006751)	cpt2 (ENSEEEG00000006753)	porcn (ENSEEEG00000006758)	spryd4 (ENSEEEG00000006766)	GLS2 (ENSEEEG00000006783)	ENSEEEG00000006792 #22	ENSEEEG00000006794	cry3a (ENSEEEG00000006799)	GPR37L1 (ENSEEEG00000006840)	itpr3 (ENSEEEG00000007033)	alas2 (ENSEEEG00000013215)	ela2l (ENSEEEG00000013255)	ela2 (ENSEEEG00000013271)	fhad1 (ENSEEEG00000013800)	efhd2 (ENSEEEG00000013802)	taf10 (ENSEEEG00000013803)	cacna1sb (ENSEEEG00000013829)	tmem9 (ENSEEEG00000014098)	suv39h1b (ENSEEEG00000014101)	ENSEEEG00000014102	foxp3a (ENSEEEG00000014105)
Euteleosteomorpha	ANCESTRAL SPECIES	5	ENSGT00940000153993.B	ENSGT01090000260174	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT01030000234528.B.b.a.a.a.c.a	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305
Acanthomorphata	ANCESTRAL SPECIES	26											ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305
Euacanthomorphacea	ANCESTRAL SPECIES	1	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027.b	ENSGT00940000157569	ENSGT00940000166500	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00730000112701	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427
Pinecone sodierfish	MODERN SPECIES	19	ENSMMDG00005016587	ENSMMDG00005016588	atp2b2 (ENSMMDG00005016612)	iars1 (ENSMMDG00005016801)	rpl29 (ENSMMDG00005016842)	dusp7 (ENSMMDG00005016846)	POC1A (ENSMMDG00005016854)	b9d2 (ENSMMDG00005017018)	alas1 (ENSMMDG00005017021)	shisa10.1 (ENSMMDG00005017030)	ITGA7 (ENSMMDG00005017039)	ENSMMDG00005017135	PPP1R1A (ENSMMDG00005017137)	ENSMMDG00005017142	nckap1l (ENSMMDG00005004018)	COL2A1 (ENSMMDG00005004620) #22	ENSMMDG00005004648	myg1 (ENSMMDG00005004653)	MAP3K12 (ENSMMDG00005004658)	PCBP2 (ENSMMDG00005004677)	ENSMMDG00005004735	AMHR2 (ENSMMDG00005004781)	ENSMMDG00005004791	sp1 (ENSMMDG00005004796)	ENSMMDG00005004804	tarbp2 (ENSMMDG00005004811)	sp7 (ENSMMDG00005004865)	igsf8 (ENSMMDG00005004871)	SOAT2 (ENSMMDG00005004877)	KIF5A (ENSMMDG00005004924)	dctn2 (ENSMMDG00005005252)
Percomorphaceae	ANCESTRAL SPECIES	1	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027.b	ENSGT00940000157569	ENSGT00940000166500	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00730000112701	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427
Tiger tail seahorse	MODERN SPECIES	418																ENSHCOG00000021068 #22	ENSHCOG00000021030	myg1 (ENSHCOG00000021004)	MAP3K12 (ENSHCOG00000020992)	ENSHCOG00000020951	AMHR2 (ENSHCOG00000020913)	rap1ab (ENSHCOG00000020906)	timm17a (ENSHCOG00000020881)	LMOD1 (ENSHCOG00000020858)	shisa4 (ENSHCOG00000020829)	ipo9 (ENSHCOG00000020824)	ENSHCOG00000020809	GNAS (ENSHCOG00000020800)	prelid3b (ENSHCOG00000000562)	glyctk (ENSHCOG00000020764)	tcta (ENSHCOG00000020758)
Percomorphaceae_B	ANCESTRAL SPECIES	3	ENSGT00940000166500	ENSGT00940000166449	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000156030.j	ENSGT00940000166256	ENSGT00940000174536	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00730000112701	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427
Ovalentaria	ANCESTRAL SPECIES	2	ENSGT00940000166500	ENSGT00940000166449	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000156030.j	ENSGT00940000166256	ENSGT00940000174536	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305	ENSGT00550000075017
Atherinomorphae	ANCESTRAL SPECIES	2	ENSGT00940000166500	ENSGT00940000166449	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000156030.j	ENSGT00940000166256	ENSGT00980000200109	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305	ENSGT00550000075017
Cyprinodontiformes	ANCESTRAL SPECIES	2	ENSGT00940000166500	ENSGT00940000166449	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000156030.j	ENSGT00940000166256	ENSGT00980000200109	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305	ENSGT00550000075017
Aplocheiloidei	ANCESTRAL SPECIES	10	ENSGT00940000157569	ENSGT00940000166500	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000156030.j	ENSGT00940000166256	ENSGT00980000200109	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305	ENSGT00550000075017
Mangrove rivulus	MODERN SPECIES	11	slc6a1b (ENSKMAG00000010778)	SLC6A11 (ENSKMAG00000010854)	atp2b2 (ENSKMAG00000010950)	iars1 (ENSKMAG00000011154)	rpl29 (ENSKMAG00000011291)	dusp7 (ENSKMAG00000011312)	POC1A (ENSKMAG00000011337)	alas1 (ENSKMAG00000011370)	ENSKMAG00000011409	ENSKMAG00000011420	ITGA7 (ENSKMAG00000011461)	ENSKMAG00000011530	PPP1R1A (ENSKMAG00000011553)	ENSKMAG00000011564	nckap1l (ENSKMAG00000011611)	COL2A1 (ENSKMAG00000011742) #22	ENSKMAG00000011879	myg1 (ENSKMAG00000011915)	MAP3K12 (ENSKMAG00000011955)	PCBP2 (ENSKMAG00000012031)	sp1 (ENSKMAG00000012103)	ENSKMAG00000012119	tarbp2 (ENSKMAG00000012142)	sp7 (ENSKMAG00000012155)	igsf8 (ENSKMAG00000012166)	soat2 (ENSKMAG00000012185)	KIF5A (ENSKMAG00000012239)	dctn2 (ENSKMAG00000012341)	mars1 (ENSKMAG00000012408)	ddit3 (ENSKMAG00000012519)	ARHGAP9 (ENSKMAG00000012550)
Turquoise killifish	MODERN SPECIES	1619	DUSP7 (ENSNFUG00015007134)	POC1A (ENSNFUG00015007146)	b9d2 (ENSNFUG00015007168)	ALAS1 (ENSNFUG00015007174)	SHISA5 (ENSNFUG00015007200)	zgc:112163 (ENSNFUG00015007202)	BCDIN3D (ENSNFUG00015007212)	COX14 (ENSNFUG00015007214)	ENSNFUG00015007221	ITGA7 (ENSNFUG00015007273)	NPFFL (ENSNFUG00015007442)	PPP1R1A (ENSNFUG00015007452)	ENSNFUG00015007454	ENSNFUG00015007475	nckap1l (ENSNFUG00015007752)	COL2A1 (ENSNFUG00015008689) #22	C11H12ORF10 (ENSNFUG00015016109)	MAP3K12 (ENSNFUG00015016127)	PCBP2 (ENSNFUG00015016205)	ENSNFUG00015016255	sp1 (ENSNFUG00015016270)	ENSNFUG00015016346	TARBP2 (ENSNFUG00015016352)	sp7 (ENSNFUG00015016370)	igsf8 (ENSNFUG00015016377)	soat2 (ENSNFUG00015016386)	KIF5A (ENSNFUG00015016451)	ENSNFUG00015017947	dctn2 (ENSNFUG00015017953)	DDIT3 (ENSNFUG00015017974)	mars1 (ENSNFUG00015018073)
Cyprinodontoidei	ANCESTRAL SPECIES	4	ENSGT00940000166500	ENSGT00940000166449	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157330	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000156030.j	ENSGT00940000166256	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305	ENSGT00550000075017
NAME_4	ANCESTRAL SPECIES	14	ENSGT00940000157569	ENSGT00940000166500	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157330	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000156030.j	ENSGT00940000166256	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305	ENSGT00550000075017
Sheepshead minnow	MODERN SPECIES	146					ENSCVAG00000015617	dusp7 (ENSCVAG00000015606)	POC1A (ENSCVAG00000015594)	b9d2 (ENSCVAG00000015554)	alas1 (ENSCVAG00000015548)	ENSCVAG00000015522	ITGA7 (ENSCVAG00000015509)	ENSCVAG00000015478	PPP1R1A (ENSCVAG00000015474)	ENSCVAG00000015466	nckap1l (ENSCVAG00000015442)	COL2A1 (ENSCVAG00000015242) #22	ENSCVAG00000010062	myg1 (ENSCVAG00000010043)	MAP3K12 (ENSCVAG00000010006)	PCBP2 (ENSCVAG00000009913)	ENSCVAG00000009873	sp1 (ENSCVAG00000009861)	ENSCVAG00000009843	tarbp2 (ENSCVAG00000009832)	sp7 (ENSCVAG00000009812)	igsf8 (ENSCVAG00000009801)	soat2 (ENSCVAG00000009750)	KIF5A (ENSCVAG00000009711)	dctn2 (ENSCVAG00000009660)	ddit3 (ENSCVAG00000009326)	mars1 (ENSCVAG00000009314)
Mummichog	MODERN SPECIES	2262	slc6a1b (ENSFHEG00000014949)	SLC6A11 (ENSFHEG00000015008)	atp2b2 (ENSFHEG00000015161)	iars1 (ENSFHEG00000015399)	rpl29 (ENSFHEG00000015425)	pacrg (ENSFHEG00000015438)	dusp7 (ENSFHEG00000015455)	POC1A (ENSFHEG00000015504)	alas1 (ENSFHEG00000015544)	ENSFHEG00000015551	ITGA7 (ENSFHEG00000015568)	ENSFHEG00000015594	ENSFHEG00000015628	ENSFHEG00000015695	nckap1l (ENSFHEG00000015814)	COL2A1 (ENSFHEG00000015893) #22	ENSFHEG00000015918	myg1 (ENSFHEG00000015924)	MAP3K12 (ENSFHEG00000015967)	PCBP2 (ENSFHEG00000016024)	ENSFHEG00000016043	sp1 (ENSFHEG00000016071)	ENSFHEG00000016108	tarbp2 (ENSFHEG00000016118)	sp7 (ENSFHEG00000016121)	igsf8 (ENSFHEG00000016131)	ENSFHEG00000016159	KIF5A (ENSFHEG00000016245)	ENSFHEG00000016257	dctn2 (ENSFHEG00000016325)	ddit3 (ENSFHEG00000016339)
Poeciliinae	ANCESTRAL SPECIES	4	ENSGT00940000166500	ENSGT00940000166449	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157330	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000156030.j	ENSGT00940000166256	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305	ENSGT00550000075017
Poecilia	ANCESTRAL SPECIES	23	ENSGT00940000166500.e	ENSGT00940000166449	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157330	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000156030.j	ENSGT00940000166256	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305	ENSGT00550000075017
NAME_6	ANCESTRAL SPECIES	7	ENSGT00940000166500.e	ENSGT00940000166449	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157330	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000156030.j	ENSGT00940000166256	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305	ENSGT00550000075017
Amazon molly	MODERN SPECIES	254	atp2b2 (ENSPFOG00000011920)	ENSPFOG00000021809	iars1 (ENSPFOG00000011883)	rpl29 (ENSPFOG00000011385)	pacrg (ENSPFOG00000011380)	dusp7 (ENSPFOG00000011374)	b9d2 (ENSPFOG00000020364)	POC1A (ENSPFOG00000011354)	alas1 (ENSPFOG00000011304)	ENSPFOG00000011173	ITGA7 (ENSPFOG00000011133)	ENSPFOG00000010642	ENSPFOG00000022867	ENSPFOG00000010599	nckap1l (ENSPFOG00000010097)	COL2A1 (ENSPFOG00000009924) #22	ENSPFOG00000008225	myg1 (ENSPFOG00000008202)	MAP3K12 (ENSPFOG00000008087)	PCBP2 (ENSPFOG00000008011)	ENSPFOG00000007805	ENSPFOG00000007801	ENSPFOG00000007792	sp1 (ENSPFOG00000007682)	ENSPFOG00000007616	tarbp2 (ENSPFOG00000007586)	sp7 (ENSPFOG00000007503)	igsf8 (ENSPFOG00000007483)	soat2 (ENSPFOG00000007442)	KIF5A (ENSPFOG00000007419)	dctn2 (ENSPFOG00000007143)
Sailfin molly	MODERN SPECIES	41																COL2A1 (ENSPLAG00000017341) #22	ENSPLAG00000017405	myg1 (ENSPLAG00000017427)	MAP3K12 (ENSPLAG00000000398)	PCBP2 (ENSPLAG00000017518)	ENSPLAG00000017529	sp1 (ENSPLAG00000017625)	ENSPLAG00000017648	tarbp2 (ENSPLAG00000017659)	sp7 (ENSPLAG00000017665)	igsf8 (ENSPLAG00000017676)	ENSPLAG00000017688	KIF5A (ENSPLAG00000017750)	dctn2 (ENSPLAG00000017803)	ddit3 (ENSPLAG00000017812)	mars1 (ENSPLAG00000017870)
Guppy	MODERN SPECIES	457	SLC6A11 (ENSPREG00000006585)	atp2b2 (ENSPREG00000006686)	iars1 (ENSPREG00000006938)	rpl29 (ENSPREG00000007066)	pacrg (ENSPREG00000007136)	dusp7 (ENSPREG00000007153)	POC1A (ENSPREG00000007172)	ENSPREG00000007203	alas1 (ENSPREG00000007222)	ENSPREG00000007269	ITGA7 (ENSPREG00000007286)	ENSPREG00000007353	PPP1R1A (ENSPREG00000007388)	ENSPREG00000007417	nckap1l (ENSPREG00000007472)	COL2A1 (ENSPREG00000007539) #22	ENSPREG00000007608	myg1 (ENSPREG00000007647)	MAP3K12 (ENSPREG00000007677)	PCBP2 (ENSPREG00000007742)	ENSPREG00000007784	sp1 (ENSPREG00000007799)	tarbp2 (ENSPREG00000007815)	sp7 (ENSPREG00000007827)	igsf8 (ENSPREG00000007839)	SOAT2 (ENSPREG00000007854)	KIF5A (ENSPREG00000007937)	dctn2 (ENSPREG00000008030)	mars1 (ENSPREG00000008123)	ddit3 (ENSPREG00000008197)	ARHGAP9 (ENSPREG00000008228)
Platyfish	MODERN SPECIES	12	slc6a1b (ENSXMAG00000017454)	SLC6A11 (ENSXMAG00000017478)	atp2b2 (ENSXMAG00000017498)	iars1 (ENSXMAG00000017562)	rpl29 (ENSXMAG00000020948)	pacrg (ENSXMAG00000017628)	dusp7 (ENSXMAG00000023607)	POC1A (ENSXMAG00000017631)	alas1 (ENSXMAG00000017638)	shisa10.1 (ENSXMAG00000017643)	ITGA7 (ENSXMAG00000017644)	ENSXMAG00000017674	ENSXMAG00000021147	ENSXMAG00000017675	nckap1l (ENSXMAG00000017687)	COL2A1 (ENSXMAG00000017719) #22	ENSXMAG00000017757	myg1 (ENSXMAG00000017759)	MAP3K12 (ENSXMAG00000017771)	PCBP2 (ENSXMAG00000023803)	ENSXMAG00000017826	sp1 (ENSXMAG00000017829)	ENSXMAG00000028667	tarbp2 (ENSXMAG00000017836)	sp7 (ENSXMAG00000017840)	igsf8 (ENSXMAG00000017842)	soat2 (ENSXMAG00000017849)	KIF5A (ENSXMAG00000017874)	dctn2 (ENSXMAG00000017906)	ddit3 (ENSXMAG00000017918)	mars1 (ENSXMAG00000017920)
Oryzias	ANCESTRAL SPECIES	1	ENSGT00940000166500	ENSGT00940000166449	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000156030.j	ENSGT00940000166256	ENSGT00980000200109	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305	ENSGT00550000075017
Oryzias_b	ANCESTRAL SPECIES	3	ENSGT00940000157569	ENSGT00940000166500	ENSGT00940000166449	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000156030.j	ENSGT00940000166256	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000167008	ENSGT00940000155099.l	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305	ENSGT00550000075017
Indian medaka	MODERN SPECIES	8	slc6a1b (ENSOMEG00000020620)	SLC6A11 (ENSOMEG00000020583)	atp2b2 (ENSOMEG00000020468)	iars1 (ENSOMEG00000020072)	rpl29 (ENSOMEG00000019919)	dusp7 (ENSOMEG00000019870)	POC1A (ENSOMEG00000019834)	ENSOMEG00000019743	alas1 (ENSOMEG00000019729)	ENSOMEG00000019704	ITGA7 (ENSOMEG00000019674)	ENSOMEG00000019514	PPP1R1A (ENSOMEG00000019501)	ENSOMEG00000000517	nckap1l (ENSOMEG00000019423)	COL2A1 (ENSOMEG00000019204) #22	ENSOMEG00000019175	myg1 (ENSOMEG00000019142)	MAP3K12 (ENSOMEG00000019086)	PCBP2 (ENSOMEG00000019014)	ENSOMEG00000018945	ENSOMEG00000018896	ENSOMEG00000018881	tarbp2 (ENSOMEG00000018860)	sp7 (ENSOMEG00000018841)	igsf8 (ENSOMEG00000018831)	ENSOMEG00000018778	KIF5A (ENSOMEG00000018732)	dctn2 (ENSOMEG00000018587)	ddit3 (ENSOMEG00000018481)	mars1 (ENSOMEG00000018411)
Javanese ricefish	MODERN SPECIES	19	slc6a1b (ENSOJAG00000015157)	SLC6A11 (ENSOJAG00000012456)	atp2b2 (ENSOJAG00000011558)	ENSOJAG00000011331	iars1 (ENSOJAG00000011128)	rpl29 (ENSOJAG00000011048)	dusp7 (ENSOJAG00000011011)	b9d2 (ENSOJAG00000011002)	POC1A (ENSOJAG00000010853)	alas1 (ENSOJAG00000010712)	shisa10.1 (ENSOJAG00000010693)	ENSOJAG00000010635	ENSOJAG00000010618	ENSOJAG00000009696	nckap1l (ENSOJAG00000008812)	COL2A1 (ENSOJAG00000003297) #22	ENSOJAG00000002749	myg1 (ENSOJAG00000002733)	MAP3K12 (ENSOJAG00000001982)	PCBP2 (ENSOJAG00000001741)	ENSOJAG00000001708	ENSOJAG00000001678	ENSOJAG00000001656	TARBP2 (ENSOJAG00000001633)	sp7 (ENSOJAG00000001621)	igsf8 (ENSOJAG00000001608)	soat2 (ENSOJAG00000001582)	KIF5A (ENSOJAG00000001014)	dctn2 (ENSOJAG00000000710)	ddit3 (ENSOJAG00000000630)	mars1 (ENSOJAG00000000451)
Oryzias_a	ANCESTRAL SPECIES	5	ENSGT00940000157569	ENSGT00940000166500	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000156030.j	ENSGT00940000166256	ENSGT00980000200109	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305	ENSGT00550000075017
Japanese Medaka HdrR	MODERN SPECIES	19	atp2b2 (ENSORLG00000004673)	iars1 (ENSORLG00000004747)	rpl29 (ENSORLG00000023610)	ENSORLG00000028518	dusp7 (ENSORLG00000004762)	POC1A (ENSORLG00000004778)	b9d2 (ENSORLG00000028375)	alas1 (ENSORLG00000004789)	shisa10.1 (ENSORLG00000026078)	ENSORLG00000004804	ITGA7 (ENSORLG00000004894)	ENSORLG00000024600	PPP1R1A (ENSORLG00000021863)	ENSORLG00000004927	nckap1l (ENSORLG00000005002)	col2a1b (ENSORLG00000005102) #22	ENSORLG00000005112	myg1 (ENSORLG00000005118)	MAP3K12 (ENSORLG00000005144)	PCBP2 (ENSORLG00000005176)	ENSORLG00000029598	sp1 (ENSORLG00000005195)	ENSORLG00000005202	TARBP2 (ENSORLG00000005209)	sp7 (ENSORLG00000005215)	igsf8 (ENSORLG00000005224)	soat2 (ENSORLG00000005226)	KIF5A (ENSORLG00000005301)	dctn2 (ENSORLG00000005353)	ddit3 (ENSORLG00000022325)	mars1 (ENSORLG00000005405)
Ovalentaria_B	ANCESTRAL SPECIES	5	ENSGT00940000156027.b	ENSGT00940000157569	ENSGT00940000166500	ENSGT00940000166449	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000171855	ENSGT00980000200109	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305	ENSGT00550000075017
Pomacentridae	ANCESTRAL SPECIES	3	ENSGT00940000156027.b	ENSGT00940000157569	ENSGT00940000166500	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000171855	ENSGT00940000166256	ENSGT00940000174536	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305	ENSGT00550000075017
Bicolor damselfish	MODERN SPECIES	444																col2a1b (ENSSPAG00000022876) #22	ENSSPAG00000022869	myg1 (ENSSPAG00000022861)	MAP3K12 (ENSSPAG00000022850)	PCBP2 (ENSSPAG00000022833)	sp1 (ENSSPAG00000022826)	ENSSPAG00000022815	tarbp2 (ENSSPAG00000022797)	sp7 (ENSSPAG00000022795)	igsf8 (ENSSPAG00000022792)	ENSSPAG00000022788	ENSSPAG00000022784	ENSSPAG00000022781	KIF5A (ENSSPAG00000022770)	dctn2 (ENSSPAG00000022735)	ddit3 (ENSSPAG00000022721)
Pomacentridae_A	ANCESTRAL SPECIES	38	ENSGT00940000156027.b	ENSGT00940000157569	ENSGT00940000166500	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000171855	ENSGT00940000166256	ENSGT00940000174536	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305	ENSGT00550000075017
Amphiprion	ANCESTRAL SPECIES	57	ENSGT00940000156027.b	ENSGT00940000157569	ENSGT00940000166500	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000171855	ENSGT00940000166256	ENSGT00940000174536	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305	ENSGT00550000075017
Clown anemonefish	MODERN SPECIES	1690															nckap1l (ENSAOCG00000013514)	COL2A1 (ENSAOCG00000002210) #22	ENSAOCG00000010896	myg1 (ENSAOCG00000000678)	fstl1b (ENSAOCG00000010842)	LRRC58 (ENSAOCG00000010783)	ENSAOCG00000010769	GPR156 (ENSAOCG00000010746)	gsk3ba (ENSAOCG00000010716)	nr1i2 (ENSAOCG00000010669)	CFAP91 (ENSAOCG00000010650)	ENSAOCG00000010624	zgc:113337 (ENSAOCG00000010602)
Orange clownfish	MODERN SPECIES	20	SLC6A11 (ENSAPEG00000005421)	atp2b2 (ENSAPEG00000005473)	iars1 (ENSAPEG00000005602)	rpl29 (ENSAPEG00000005754)	dusp7 (ENSAPEG00000005762)	POC1A (ENSAPEG00000005795)	alas1 (ENSAPEG00000005844)	ENSAPEG00000005874	ENSAPEG00000005886	ENSAPEG00000005899	ITGA7 (ENSAPEG00000005940)	npffl (ENSAPEG00000005967)	PPP1R1A (ENSAPEG00000005984)	ENSAPEG00000006004	nckap1l (ENSAPEG00000006073)	COL2A1 (ENSAPEG00000006442) #22	myg1 (ENSAPEG00000008109)	ENSAPEG00000008136	MAP3K12 (ENSAPEG00000008165)	PCBP2 (ENSAPEG00000008226)	ENSAPEG00000008281	sp1 (ENSAPEG00000008325)	ENSAPEG00000008368	tarbp2 (ENSAPEG00000008376)	sp7 (ENSAPEG00000008382)	igsf8 (ENSAPEG00000008392)	soat2 (ENSAPEG00000008415)	KIF5A (ENSAPEG00000008450)	dctn2 (ENSAPEG00000008529)	ddit3 (ENSAPEG00000008725)	mars1 (ENSAPEG00000008610)
Cichlidae	ANCESTRAL SPECIES	1	ENSGT00940000157569	ENSGT00940000166500	ENSGT00940000166449	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000166256	ENSGT00940000174536	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000167008	ENSGT00730000112701	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305
Midas cichlid	MODERN SPECIES	423	ENSACIG00000018503	SLC6A11 (ENSACIG00000018474)	atp2b2 (ENSACIG00000018433)	ENSACIG00000018425	iars1 (ENSACIG00000018381)	rpl29 (ENSACIG00000018340)	dusp7 (ENSACIG00000018327)	POC1A (ENSACIG00000018288)	alas1 (ENSACIG00000018269)	ENSACIG00000018255	ITGA7 (ENSACIG00000018157)	ENSACIG00000018122	ENSACIG00000018101	ENSACIG00000018066	nckap1l (ENSACIG00000017988)	col2a1b (ENSACIG00000017092) #22	ENSACIG00000016980	myg1 (ENSACIG00000016964)	MAP3K12 (ENSACIG00000016919)	PCBP2 (ENSACIG00000016893)	ENSACIG00000016879	sp1 (ENSACIG00000016867)	ENSACIG00000016857	tarbp2 (ENSACIG00000016780)	sp7 (ENSACIG00000016758)	igsf8 (ENSACIG00000016688)	soat2 (ENSACIG00000016667)	KIF5A (ENSACIG00000016616)	dctn2 (ENSACIG00000016582)	ddit3 (ENSACIG00000016572)	mars1 (ENSACIG00000016271)
Pseudocrenilabrinae	ANCESTRAL SPECIES	4	ENSGT00950000183202.a.a	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00390000014941	ENSGT00970000193381.a.b.a.b.a.b.a.a.b.b.b.a.b	ENSGT00970000193381.a.b.a.b.a.b.a.a.b.b.b.b.b.a.a	ENSGT00940000176155.e.a	ENSGT00940000166256.d	ENSGT00940000166256.c	ENSGT00940000174536	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305	ENSGT00550000075017
Nile tilapia	MODERN SPECIES	17	ENSONIG00000037014	ENSONIG00000030046	ENSONIG00000005242	ENSONIG00000033917	ENSONIG00000005240	ENSONIG00000037918	ENSONIG00000005237	ENSONIG00000005236	ENSONIG00000042106	ITGA7 (ENSONIG00000005230)	ENSONIG00000036273	ENSONIG00000005229	PPP1R1A (ENSONIG00000042667)	ENSONIG00000005222	nckap1l (ENSONIG00000005208)	COL2A1 (ENSONIG00000005146) #22	ENSONIG00000021382	myg1 (ENSONIG00000005142)	MAP3K12 (ENSONIG00000005141)	PCBP2 (ENSONIG00000005135)	ENSONIG00000005133	shmt2 (ENSONIG00000005123)	sp1 (ENSONIG00000005121)	ENSONIG00000039640	tarbp2 (ENSONIG00000005115)	sp7 (ENSONIG00000041473)	igsf8 (ENSONIG00000005111)	soat2 (ENSONIG00000005106)	KIF5A (ENSONIG00000005097)	dctn2 (ENSONIG00000005094)	ddit3 (ENSONIG00000041620)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	2	ENSGT00530000063880.a	ENSGT00390000012257.e.b	ENSGT00390000012257.e.a	ENSGT00390000014941	ENSGT00970000193381.a.b.a.b.a.b.a.a.b.b.b.a.b	ENSGT00970000193381.a.b.a.b.a.b.a.a.b.b.b.b.b.a.a	ENSGT00940000176155.e.a	ENSGT00940000166256.d	ENSGT00940000166256.c	ENSGT00940000174536	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305	ENSGT00550000075017
Haplochromini	ANCESTRAL SPECIES	1	ENSGT00950000183202.a.a	ENSGT00530000063880.a	ENSGT00390000012257.e.b	ENSGT00390000012257.e.a	ENSGT00390000014941	ENSGT00970000193381.a.b.a.b.a.b.a.a.b.b.b.a.b	ENSGT00970000193381.a.b.a.b.a.b.a.a.b.b.b.a.a.b	ENSGT00940000166256.d	ENSGT00940000166256.c	ENSGT00940000174536	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265.f	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000167008	ENSGT00390000002762.a.a.b.a.a.b	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305
Burton s mouthbrooder	MODERN SPECIES	679									shisa10.1 (ENSHBUG00000017585)	ENSHBUG00000017593	ITGA7 (ENSHBUG00000017929)	ENSHBUG00000017951	ENSHBUG00000000914	ENSHBUG00000018006	nckap1l (ENSHBUG00000018166)	COL2A1 (ENSHBUG00000018298) #22	ENSHBUG00000018347	myg1 (ENSHBUG00000018380)	MAP3K12 (ENSHBUG00000000550)	PCBP2 (ENSHBUG00000018512)	shmt2 (ENSHBUG00000018558)	ENSHBUG00000018575	sp1 (ENSHBUG00000018588)	ENSHBUG00000018625	tarbp2 (ENSHBUG00000018639)	sp7 (ENSHBUG00000018645)	igsf8 (ENSHBUG00000018658)	soat2 (ENSHBUG00000018672)	KIF5A (ENSHBUG00000018815)
Haplochromini_A	ANCESTRAL SPECIES		ENSGT00530000063880.a	ENSGT00390000012257.e.b	ENSGT00390000012257.e.a	ENSGT00390000014941	ENSGT00970000193381.a.b.a.b.a.b.a.a.b.b.b.a.b	ENSGT00970000193381.a.b.a.b.a.b.a.a.b.b.b.a.a.b	ENSGT00970000193381.a.b.a.b.a.b.a.a.b.b.b.b.b.a.b.a	ENSGT00940000166256.d	ENSGT00940000166256.c	ENSGT00940000174536	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265.f	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000167008	ENSGT00390000002762.a.a.b.a.a.b	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305
Haplochromini_B	ANCESTRAL SPECIES									ENSGT00940000166256.d	ENSGT00940000166256.c	ENSGT00940000174536	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265.f	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000167008	ENSGT00390000002762.a.a.b.a.a.b	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305
Zebra mbuna	MODERN SPECIES	1108	ENSMZEG00005005670	prelid3b (ENSMZEG00005006164)	aurka (ENSMZEG00005006183)	slc32a1 (ENSMZEG00005006194)	ENSMZEG00005006214	PPP1R16B (ENSMZEG00005006259)	fam210b (ENSMZEG00005006292)	NDUFA4L2 (ENSMZEG00005006299)	shmt2 (ENSMZEG00005006310)	NXPH4 (ENSMZEG00005006329)	ITGA7 (ENSMZEG00005006353)	npffl (ENSMZEG00005006408)	PPP1R1A (ENSMZEG00005006416)	ENSMZEG00005006434	nckap1l (ENSMZEG00005006480)	COL2A1 (ENSMZEG00005006568) #22	ENSMZEG00005006602	myg1 (ENSMZEG00005006620)	MAP3K12 (ENSMZEG00005006642)	PCBP2 (ENSMZEG00005006692)	ENSMZEG00005006741	shmt2 (ENSMZEG00005006767)	sp1 (ENSMZEG00005006811)	ENSMZEG00005006827	tarbp2 (ENSMZEG00005006895)	sp7 (ENSMZEG00005006905)	igsf8 (ENSMZEG00005006915)	soat2 (ENSMZEG00005006932)	KIF5A (ENSMZEG00005006980)	dctn2 (ENSMZEG00005007037)	ddit3 (ENSMZEG00005007209)
Eastern happy	MODERN SPECIES	17	rbl1 (ENSACLG00000017118)	ENSACLG00000017218	psmf1 (ENSACLG00000017223)	pigu (ENSACLG00000017250)	ENSACLG00000017322	ENSACLG00000017335	ENSACLG00000017352	ENSACLG00000017372	ENSACLG00000017396	ENSACLG00000017415	ITGA7 (ENSACLG00000017430)	npffl (ENSACLG00000017518)	PPP1R1A (ENSACLG00000017532)	ENSACLG00000017555	nckap1l (ENSACLG00000017599)	col2a1b (ENSACLG00000017863) #22	ENSACLG00000018035	myg1 (ENSACLG00000018086)	MAP3K12 (ENSACLG00000018145)	PCBP2 (ENSACLG00000018264)	ENSACLG00000018364	shmt2 (ENSACLG00000018445)	sp1 (ENSACLG00000018496)	ENSACLG00000018522	tarbp2 (ENSACLG00000018569)	sp7 (ENSACLG00000018596)	igsf8 (ENSACLG00000018604)	soat2 (ENSACLG00000018633)	KIF5A (ENSACLG00000018664)	dctn2 (ENSACLG00000018818)	ddit3 (ENSACLG00000018924)
P. nyererei	MODERN SPECIES	391									ENSPNYG00000014785	ENSPNYG00000014767	ITGA7 (ENSPNYG00000014723)	ENSPNYG00000014696	ENSPNYG00000014673	ENSPNYG00000014624	nckap1l (ENSPNYG00000014540)	COL2A1 (ENSPNYG00000014391) #22	ENSPNYG00000014314	myg1 (ENSPNYG00000014288)	MAP3K12 (ENSPNYG00000014244)	PCBP2 (ENSPNYG00000014206)	shmt2 (ENSPNYG00000014175)	sp1 (ENSPNYG00000014149)	ENSPNYG00000014134	tarbp2 (ENSPNYG00000014125)	sp7 (ENSPNYG00000014107)	igsf8 (ENSPNYG00000014093)	soat2 (ENSPNYG00000014076)	KIF5A (ENSPNYG00000014033)	dctn2 (ENSPNYG00000013974)	ddit3 (ENSPNYG00000013950)	mars1 (ENSPNYG00000013809)
Percomorphaceae_C	ANCESTRAL SPECIES	1	ENSGT00940000166500	ENSGT00940000166449	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000156030.j	ENSGT00940000166256	ENSGT00940000174536	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00730000112701	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427
Eupercaria	ANCESTRAL SPECIES		ENSGT00940000157569	ENSGT00940000166500	ENSGT00940000166449	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000166256	ENSGT00940000174536	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00730000112701	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427
Tetraodontidae	ANCESTRAL SPECIES	1	ENSGT00940000166500	ENSGT00940000166449	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428.c	ENSGT00940000156030.j	ENSGT00940000166256	ENSGT00940000174536	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b	ENSGT00940000158764.g	ENSGT00390000000873.a.a	ENSGT00940000166225	ENSGT00950000182852.B.a	ENSGT00940000155343.a.b	ENSGT00530000063849.B
Tetraodon	MODERN SPECIES	2	tamm41 (ENSTNIG00000014810)	vgll4b (ENSTNIG00000014811)	SLC6A11 (ENSTNIG00000014812)	atp2b2 (ENSTNIG00000014813)	ENSTNIG00000014815	iars1 (ENSTNIG00000014814)	rpl29 (ENSTNIG00000014816)	dusp7 (ENSTNIG00000014817)	POC1A (ENSTNIG00000014818)	b9d2 (ENSTNIG00000014819)	alas1 (ENSTNIG00000014820)	ITGA7 (ENSTNIG00000014821)	PPP1R1A (ENSTNIG00000014822)	ENSTNIG00000014823	nckap1l (ENSTNIG00000014824)	COL2A1 (ENSTNIG00000014825) #22	ENSTNIG00000014826	myg1 (ENSTNIG00000014827)	MAP3K12 (ENSTNIG00000014828)	tbc1d20 (ENSTNIG00000014829)	ENSTNIG00000014830	rbck1 (ENSTNIG00000014831)	ENSTNIG00000014832	NECAB3 (ENSTNIG00000014833)	cbfa2t2 (ENSTNIG00000014834)	SNTA1 (ENSTNIG00000007032)	tox2 (ENSTNIG00000007033)	st7l (ENSTNIG00000007034)	wnt2ba (ENSTNIG00000007035)	CTTNBP2NL (ENSTNIG00000007036)	ENSTNIG00000000525
Eupecaria_A	ANCESTRAL SPECIES		ENSGT00940000157569	ENSGT00940000166500	ENSGT00940000166449	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000166256	ENSGT00940000174536	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00730000112701	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427
Ballan wrasse	MODERN SPECIES	92					iars1 (ENSLBEG00000016283)	rpl29 (ENSLBEG00000016213)	dusp7 (ENSLBEG00000016186)	POC1A (ENSLBEG00000016119)	alas1 (ENSLBEG00000016079)	shisa10.1 (ENSLBEG00000016059)	ITGA7 (ENSLBEG00000015898)	ENSLBEG00000015807	ENSLBEG00000015786	ENSLBEG00000015735	nckap1l (ENSLBEG00000015581)	col2a1b (ENSLBEG00000015437) #22	ENSLBEG00000015389	myg1 (ENSLBEG00000015364)	MAP3K12 (ENSLBEG00000015291)	PCBP2 (ENSLBEG00000015211)	ENSLBEG00000015173	AMHR2 (ENSLBEG00000015150)	ENSLBEG00000015137	sp1 (ENSLBEG00000015119)	ENSLBEG00000015088	tarbp2 (ENSLBEG00000015027)	sp7 (ENSLBEG00000014988)	igsf8 (ENSLBEG00000014964)	soat2 (ENSLBEG00000014908)	KIF5A (ENSLBEG00000014231)	dctn2 (ENSLBEG00000013783)
Eupecaria_B	ANCESTRAL SPECIES	2	ENSGT00940000157569	ENSGT00940000166500	ENSGT00940000166449	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000166256	ENSGT00940000174536	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00730000112701	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427
Eupecaria_C	ANCESTRAL SPECIES		ENSGT00940000157569	ENSGT00940000166500	ENSGT00940000166449	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000166256	ENSGT00940000174536	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000160885	ENSGT00940000167008.b	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305
Eupercaria_incertae_sedis	ANCESTRAL SPECIES		ENSGT00940000157569	ENSGT00940000166500	ENSGT00550000074921	ENSGT00940000166449	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000166256	ENSGT00940000174536	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000160885	ENSGT00940000167008.b	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305
European seabass	MODERN SPECIES	10	SLC6A11 (ENSDLAG00005008002)	atp2b2 (ENSDLAG00005009542)	iars1 (ENSDLAG00005009731)	rpl29 (ENSDLAG00005010039)	ENSDLAG00005028163	POC1A (ENSDLAG00005010069)	ENSDLAG00005032085	ENSDLAG00005010116	ENSDLAG00005034054	ENSDLAG00005010202	ENSDLAG00005010224	ENSDLAG00005026687	PPP1R1A (ENSDLAG00005030883)	PDE1B (ENSDLAG00005010944)	ENSDLAG00005011292	ENSDLAG00005011706 #22	LRRC3 (ENSDLAG00005031801)	ENSDLAG00005011734	MAP3K12 (ENSDLAG00005011757)	PCBP2 (ENSDLAG00005012212)	AMHR2 (ENSDLAG00005012420)	ENSDLAG00005012532	SP1 (ENSDLAG00005028905)	ENSDLAG00005012558	ENSDLAG00005012584	ENSDLAG00005012618	igsf8 (ENSDLAG00005012622)	soat2 (ENSDLAG00005012634)	KIF5A (ENSDLAG00005012989)	dctn2 (ENSDLAG00005013696)	ddit3 (ENSDLAG00005013732)
Large yellow croaker	MODERN SPECIES	478	atp2b2 (ENSLCRG00005012156)	ENSLCRG00005012159	iars1 (ENSLCRG00005012181)	ENSLCRG00005012313	rpl29 (ENSLCRG00005012330)	dusp7 (ENSLCRG00005012335)	POC1A (ENSLCRG00005012359)	b9d2 (ENSLCRG00005012378)	alas1 (ENSLCRG00005012389)	ENSLCRG00005012548	ITGA7 (ENSLCRG00005012588)	npffl (ENSLCRG00005012660)	PPP1R1A (ENSLCRG00005012665)	ENSLCRG00005012774	nckap1l (ENSLCRG00005014295)	COL2A1 (ENSLCRG00005014800) #22	ENSLCRG00005016935	myg1 (ENSLCRG00005016939)	MAP3K12 (ENSLCRG00005016991)	PCBP2 (ENSLCRG00005017322)	AMHR2 (ENSLCRG00005017338)	ENSLCRG00005017342	sp1 (ENSLCRG00005017344)	ENSLCRG00005017346	tarbp2 (ENSLCRG00005017354)	sp7 (ENSLCRG00005017355)	igsf8 (ENSLCRG00005017357)	soat2 (ENSLCRG00005017358)	KIF5A (ENSLCRG00005017381)	dctn2 (ENSLCRG00005018057)	ddit3 (ENSLCRG00005018077)
Perciformes	ANCESTRAL SPECIES		ENSGT00940000156027.b	ENSGT00940000157569	ENSGT00940000166500	ENSGT00940000166449	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000166256	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00730000112701	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427
Cottioidei	ANCESTRAL SPECIES		ENSGT00940000160690	ENSGT00940000156027.b	ENSGT00940000157569	ENSGT00940000166500	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000166256	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00730000112701	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427
Stickleback	MODERN SPECIES	17	ENSGACG00000007304	ENSGACG00000007297	slc6a1b (ENSGACG00000007265)	SLC6A11 (ENSGACG00000007204)	atp2b2 (ENSGACG00000007138)	iars1 (ENSGACG00000007055)	rpl29 (ENSGACG00000007041)	dusp7 (ENSGACG00000007023)	b9d2 (ENSGACG00000007022)	POC1A (ENSGACG00000007015)	alas1 (ENSGACG00000006997)	shisa10.1 (ENSGACG00000006994)	ITGA7 (ENSGACG00000006983)	ENSGACG00000006946	nckap1l (ENSGACG00000006854)	col2a1b (ENSGACG00000006819) #22	ENSGACG00000006817	myg1 (ENSGACG00000006741)	MAP3K12 (ENSGACG00000006732)	PCBP2 (ENSGACG00000006681)	ENSGACG00000006676	ENSGACG00000006672	sp1 (ENSGACG00000006667)	ENSGACG00000006657	ENSGACG00000006655	tarbp2 (ENSGACG00000006645)	sp7 (ENSGACG00000006641)	igsf8 (ENSGACG00000006633)	ENSGACG00000006631	soat2 (ENSGACG00000006601)	KIF5A (ENSGACG00000006532)
Perciformes_a	ANCESTRAL SPECIES	5	ENSGT00940000156027.b	ENSGT00940000157569	ENSGT00940000166500	ENSGT00940000166449	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000166256	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305
Pike perch	MODERN SPECIES	17	SLC6A11 (ENSSLUG00000010566)	atp2b2 (ENSSLUG00000014119)	ENSSLUG00000015917	iars1 (ENSSLUG00000015971)	rpl29 (ENSSLUG00000016099)	dusp7 (ENSSLUG00000016104)	POC1A (ENSSLUG00000016113)	b9d2 (ENSSLUG00000016124)	alas1 (ENSSLUG00000016128)	shisa10.1 (ENSSLUG00000016146)	ITGA7 (ENSSLUG00000016154)	npffl (ENSSLUG00000016188)	PPP1R1A (ENSSLUG00000016191)	ENSSLUG00000016310	nckap1l (ENSSLUG00000017965)	COL2A1 (ENSSLUG00000018543) #22	ENSSLUG00000018597	myg1 (ENSSLUG00000018603)	MAP3K12 (ENSSLUG00000018620)	PCBP2 (ENSSLUG00000018910)	ENSSLUG00000018933	ENSSLUG00000018949	sp1 (ENSSLUG00000018958)	ENSSLUG00000018967	tarbp2 (ENSSLUG00000018974)	sp7 (ENSSLUG00000018984)	igsf8 (ENSSLUG00000018986)	soat2 (ENSSLUG00000018992)	KIF5A (ENSSLUG00000019081)	dctn2 (ENSSLUG00000020568)	ddit3 (ENSSLUG00000020599)
Channel bull blenny	MODERN SPECIES	19	cnpy2 (ENSCGOG00000024399)	STX16 (ENSCGOG00000024401)	DGKA (ENSCGOG00000024406)	NR4A1 (ENSCGOG00000024426)	ENSCGOG00000024428	nab2 (ENSCGOG00000024429)	ENSCGOG00000024431	ENSCGOG00000024433	ENSCGOG00000000461	ENSCGOG00000000503	ITGA7 (ENSCGOG00000000555)	npffl (ENSCGOG00000000561)	PPP1R1A (ENSCGOG00000000563)	ENSCGOG00000000698	nckap1l (ENSCGOG00000001029)	col2a1b (ENSCGOG00000002057) #22	ENSCGOG00000002609	myg1 (ENSCGOG00000002653)	MAP3K12 (ENSCGOG00000003159)	PCBP2 (ENSCGOG00000003231)	AMHR2 (ENSCGOG00000003462)	ENSCGOG00000003470	sp1 (ENSCGOG00000003476)	ENSCGOG00000003488	tarbp2 (ENSCGOG00000003490)	sp7 (ENSCGOG00000003516)	igsf8 (ENSCGOG00000003517)	SOAT2 (ENSCGOG00000003521)	KIF5A (ENSCGOG00000003603)	dctn2 (ENSCGOG00000008000)	ddit3 (ENSCGOG00000010752)
Percomorphaceae_D	ANCESTRAL SPECIES	3	ENSGT00940000156027.b	ENSGT00940000157569	ENSGT00940000166500	ENSGT00940000166449	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000174536	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00730000112701	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427
Carangaria	ANCESTRAL SPECIES	3	ENSGT00940000156027.b	ENSGT00940000157569	ENSGT00940000166500	ENSGT00940000166449	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000174536	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00730000112701	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427
Carangaria_A	ANCESTRAL SPECIES	7	ENSGT00940000156027.b	ENSGT00940000157569	ENSGT00940000166500	ENSGT00940000166449	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000174536	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305
Seriola	ANCESTRAL SPECIES	20	ENSGT00390000003282.B.f	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027.b	ENSGT00940000157569	ENSGT00940000166500	ENSGT00550000074921	ENSGT00390000007084.o	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305
Greater amberjack	MODERN SPECIES	53	HRH1 (ENSSDUG00000015689)	slc6a1b (ENSSDUG00000015693)	SLC6A11 (ENSSDUG00000015724)	atp2b2 (ENSSDUG00000015803)	iars1 (ENSSDUG00000016007)	rpl29 (ENSSDUG00000016140)	dusp7 (ENSSDUG00000016151)	POC1A (ENSSDUG00000016161)	alas1 (ENSSDUG00000016190)	shisa10.1 (ENSSDUG00000016221)	ITGA7 (ENSSDUG00000016235)	npffl (ENSSDUG00000016279)	PPP1R1A (ENSSDUG00000016300)	ENSSDUG00000016333	nckap1l (ENSSDUG00000016366)	COL2A1 (ENSSDUG00000016598) #22	ENSSDUG00000018583	myg1 (ENSSDUG00000018594)	MAP3K12 (ENSSDUG00000018605)	PCBP2 (ENSSDUG00000018636)	AMHR2 (ENSSDUG00000018694)	ENSSDUG00000018745	sp1 (ENSSDUG00000018762)	ENSSDUG00000018786	tarbp2 (ENSSDUG00000018818)	sp7 (ENSSDUG00000018832)	igsf8 (ENSSDUG00000018842)	ENSSDUG00000018863	KIF5A (ENSSDUG00000018901)	dctn2 (ENSSDUG00000019003)	mars1 (ENSSDUG00000019070)
Yellowtail amberjack	MODERN SPECIES	3138	slc6a1b (ENSSLDG00000004413)	SLC6A11 (ENSSLDG00000004331)	atp2b2 (ENSSLDG00000004231)	iars1 (ENSSLDG00000003987)	rpl29 (ENSSLDG00000003932)	dusp7 (ENSSLDG00000003903)	POC1A (ENSSLDG00000003828)	alas1 (ENSSLDG00000003778)	ENSSLDG00000003761	ENSSLDG00000003748	ITGA7 (ENSSLDG00000003670)	npffl (ENSSLDG00000003629)	ENSSLDG00000003615	ENSSLDG00000003526	nckap1l (ENSSLDG00000003075)	COL2A1 (ENSSLDG00000002272) #22	ENSSLDG00000002186	myg1 (ENSSLDG00000002150)	MAP3K12 (ENSSLDG00000002093)	PCBP2 (ENSSLDG00000002018)	AMHR2 (ENSSLDG00000001952)	ENSSLDG00000001925	sp1 (ENSSLDG00000001886)	ENSSLDG00000001873	tarbp2 (ENSSLDG00000001835)	sp7 (ENSSLDG00000001806)	igsf8 (ENSSLDG00000001788)
Barramundi perch	MODERN SPECIES	82												npffl (ENSLCAG00010017459)	ENSLCAG00010017457	ENSLCAG00010017445	nckap1l (ENSLCAG00010017295)	col2a1b (ENSLCAG00010017116) #22	ENSLCAG00010017048	myg1 (ENSLCAG00010017043)	MAP3K12 (ENSLCAG00010017038)	PCBP2 (ENSLCAG00010017031)	AMHR2 (ENSLCAG00010017023)	ENSLCAG00010017021	sp1 (ENSLCAG00010017020)	ENSLCAG00010017018	tarbp2 (ENSLCAG00010017013)	sp7 (ENSLCAG00010017011)	igsf8 (ENSLCAG00010017008)	soat2 (ENSLCAG00010017003)	KIF5A (ENSLCAG00010016992)	dctn2 (ENSLCAG00010016982)	ddit3 (ENSLCAG00010016980)
Pleuronectoidei	ANCESTRAL SPECIES	4	ENSGT00940000157569	ENSGT00940000166500	ENSGT00940000166449	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000166256.b	ENSGT00940000166256.a	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00730000112701	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293.f	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427
Tongue sole	MODERN SPECIES	2	ENSCSEG00000010140	ENSCSEG00000010144	atp2b2 (ENSCSEG00000010152)	iars1 (ENSCSEG00000010191)	ENSCSEG00000010258	rpl29 (ENSCSEG00000010267)	dusp7 (ENSCSEG00000010277)	POC1A (ENSCSEG00000010287)	alas1 (ENSCSEG00000010315)	ENSCSEG00000010336	ITGA7 (ENSCSEG00000010344)	npffl (ENSCSEG00000010371)	ENSCSEG00000010379	ENSCSEG00000010387	nckap1l (ENSCSEG00000010418)	COL2A1 (ENSCSEG00000010458) #22	ENSCSEG00000010494	myg1 (ENSCSEG00000010499)	MAP3K12 (ENSCSEG00000010511)	PCBP2 (ENSCSEG00000010540)	AMHR2 (ENSCSEG00000010574)	ENSCSEG00000010596	sp1 (ENSCSEG00000010606)	ENSCSEG00000010614	ENSCSEG00000010620	tarbp2 (ENSCSEG00000010631)	sp7 (ENSCSEG00000010658)	igsf8 (ENSCSEG00000010672)	soat2 (ENSCSEG00000010682)	KIF5A (ENSCSEG00000010724)	dctn2 (ENSCSEG00000010766)
Turbot	MODERN SPECIES	18	atp2b2 (ENSSMAG00000013851)	ENSSMAG00000013836	iars1 (ENSSMAG00000013630)	rpl29 (ENSSMAG00000013571)	DUSP7 (ENSSMAG00000013563)	ENSSMAG00000013545	POC1A (ENSSMAG00000013505)	ENSSMAG00000013470	ENSSMAG00000013464	ENSSMAG00000032365	ENSSMAG00000013375	ENSSMAG00000013358	ENSSMAG00000013321	ENSSMAG00000013278	ENSSMAG00000013190	ENSSMAG00000013036 #22	ENSSMAG00000013013	ENSSMAG00000028488	MAP3K12 (ENSSMAG00000012938)	PCBP2 (ENSSMAG00000012889)	ENSSMAG00000012872	AMHR2 (ENSSMAG00000012859)	ENSSMAG00000012830	SP1 (ENSSMAG00000012813)	ENSSMAG00000027302	TARBP2 (ENSSMAG00000012769)	ENSSMAG00000022200	igsf8 (ENSSMAG00000012735)	soat2 (ENSSMAG00000012714)	KIF5A (ENSSMAG00000012588)	dctn2 (ENSSMAG00000012547)
Anabantaria	ANCESTRAL SPECIES		ENSGT00940000157569	ENSGT00940000166500	ENSGT00940000166449	ENSGT00550000074921	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000166256.b	ENSGT00940000174536	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00730000112701	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427
Zig-zag eel	MODERN SPECIES	19	atp2b2 (ENSMAMG00000014381)	ENSMAMG00000027927	iars1 (ENSMAMG00000014297)	rpl29 (ENSMAMG00000028053)	ENSMAMG00000014261	POC1A (ENSMAMG00000014233)	ENSMAMG00000014207	ENSMAMG00000014120	ENSMAMG00000014104	ENSMAMG00000014009	ENSMAMG00000013981	ENSMAMG00000013964	ENSMAMG00000013941	ENSMAMG00000013724	ENSMAMG00000027252	ENSMAMG00000010561 #22	ENSMAMG00000010495	ENSMAMG00000010465	MAP3K12 (ENSMAMG00000010441)	PCBP2 (ENSMAMG00000010416)	ENSMAMG00000010397	AMHR2 (ENSMAMG00000010373)	SP1 (ENSMAMG00000010349)	ENSMAMG00000010311	ENSMAMG00000010272	ENSMAMG00000010257	igsf8 (ENSMAMG00000010247)	soat2 (ENSMAMG00000010240)	KIF5A (ENSMAMG00000010203)	dctn2 (ENSMAMG00000010138)	ddit3 (ENSMAMG00000028715)
Anabantoidei	ANCESTRAL SPECIES	1	ENSGT00940000157569	ENSGT00940000166500	ENSGT00550000074921	ENSGT00940000166449	ENSGT00390000007084	ENSGT00940000157262.m.a	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000166256.b	ENSGT00940000174536	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427	ENSGT00390000006305
Climbing perch	MODERN SPECIES	18	atp2b2 (ENSATEG00000024988)	iars1 (ENSATEG00000024989)	ENSATEG00000028236	rpl29 (ENSATEG00000029215)	ENSATEG00000024992	POC1A (ENSATEG00000024993)	ENSATEG00000024994	ENSATEG00000024995	ENSATEG00000028959	ENSATEG00000024997	ENSATEG00000024998	ENSATEG00000024999	PPP1R1A (ENSATEG00000028089)	ENSATEG00000025001	ENSATEG00000025002	ENSATEG00000025003 #22	ENSATEG00000025004	ENSATEG00000025005	MAP3K12 (ENSATEG00000025006)	PCBP2 (ENSATEG00000025007)	AMHR2 (ENSATEG00000025008)	ENSATEG00000025009	SP1 (ENSATEG00000025010)	ENSATEG00000026871	ENSATEG00000025012	ENSATEG00000025013	igsf8 (ENSATEG00000025014)	ENSATEG00000025015	ENSATEG00000025016	dctn2 (ENSATEG00000025017)	mars1 (ENSATEG00000025019)
Siamese fighting fish	MODERN SPECIES	16	iars1 (ENSBSLG00000021252)	rpl29 (ENSBSLG00000021628)	dusp7 (ENSBSLG00000021634)	POC1A (ENSBSLG00000021703)	b9d2 (ENSBSLG00000021723)	alas1 (ENSBSLG00000021739)	shisa10.1 (ENSBSLG00000021828)	ENSBSLG00000021843	ENSBSLG00000021883	ITGA7 (ENSBSLG00000021932)	ENSBSLG00000022473	ENSBSLG00000022487	PPP1R1A (ENSBSLG00000022494)	ENSBSLG00000022507	nckap1l (ENSBSLG00000022651)	ENSBSLG00000023439 #22	ENSBSLG00000025073	myg1 (ENSBSLG00000025075)	MAP3K12 (ENSBSLG00000025077)	PCBP2 (ENSBSLG00000025109)	AMHR2 (ENSBSLG00000025116)	ENSBSLG00000025118	sp1 (ENSBSLG00000025123)	ENSBSLG00000025126	tarbp2 (ENSBSLG00000025129)	sp7 (ENSBSLG00000025133)	igsf8 (ENSBSLG00000025137)	soat2 (ENSBSLG00000025142)	KIF5A (ENSBSLG00000025185)	dctn2 (ENSBSLG00000025329)	mars1 (ENSBSLG00000025335)
Cod	MODERN SPECIES	4	PRDM2 (ENSGMOG00000024005)	kaznb (ENSGMOG00000003230)	tmem51b (ENSGMOG00000023466)	skib (ENSGMOG00000003293)	ENSGMOG00000003332	ENSGMOG00000003374	ENSGMOG00000003399	ENSGMOG00000003438	ENSGMOG00000028290	ENSGMOG00000001662	ENSGMOG00000001615	ENSGMOG00000031105	ENSGMOG00000034210	ENSGMOG00000001584	ENSGMOG00000001527	ENSGMOG00000001436 #22	ENSGMOG00000034719	ENSGMOG00000001407	MAP3K12 (ENSGMOG00000001355)	PCBP2 (ENSGMOG00000001342)	AMHR2 (ENSGMOG00000001327)	ENSGMOG00000001324	SP1 (ENSGMOG00000025110)	ENSGMOG00000001306	ENSGMOG00000001290	ENSGMOG00000022892	igsf8 (ENSGMOG00000032192)	soat2 (ENSGMOG00000001227)	KIF5A (ENSGMOG00000008007)	dctn2 (ENSGMOG00000007997)	ddit3 (ENSGMOG00000031028)
Protacanthopterygii	ANCESTRAL SPECIES	98	ENSGT01090000260174.d	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd.a.a	ENSGT00970000198185	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000155224.c.a.e #22
Huchen	DUPLICATION
Huchen	DUPLICATION
Huchen	MODERN SPECIES	2862													ENSHHUG00000023328	ENSHHUG00000023319	ENSHHUG00000023297	ENSHHUG00000023290 #22	ENSHHUG00000023288 #22	ENSHHUG00000023285 #22	ENSHHUG00000023252	ENSHHUG00000023246
Huchen	MODERN SPECIES	2862												ENSHHUG00000023328	ENSHHUG00000023319	ENSHHUG00000023297	ENSHHUG00000023290 #22	ENSHHUG00000023288 #22	ENSHHUG00000023285 #22	ENSHHUG00000023252	ENSHHUG00000023246
Huchen	MODERN SPECIES	2862											ENSHHUG00000023328	ENSHHUG00000023319	ENSHHUG00000023297	ENSHHUG00000023290 #22	ENSHHUG00000023288 #22	ENSHHUG00000023285 #22	ENSHHUG00000023252	ENSHHUG00000023246
Salmoninae_a	ANCESTRAL SPECIES	152	ENSGT00940000161090.B.c.b.b.a.b	ENSGT00940000153993.B	ENSGT01090000260174.d	ENSGT01030000234515.a.a.a.k.c	ENSGT00940000156629.a.a	ENSGT00940000168601.c.a.b	ENSGT00940000165535.d	ENSGT01030000234528.B.b.a.a.a.c.b.v	ENSGT00390000010463.a.a.a.a.f	ENSGT00940000161168.j	ENSGT00390000002689.h	ENSGT00940000159891.c	ENSGT00940000161232.k	ENSGT00940000160712	ENSGT00940000155331.B.b	ENSGT00940000155224.c.a.e #22
Salmo	ANCESTRAL SPECIES	61	ENSGT00950000182846.a.a.b.b	ENSGT00940000161090.B.c.b.b.a.b	ENSGT00940000153993.B	ENSGT01090000260174.d	ENSGT01030000234515.a.a.a.k.c	ENSGT00940000156629.a.a	ENSGT00940000168601.d	ENSGT00940000165535.d	ENSGT01030000234528.B.b.a.a.a.c.b.v	ENSGT00390000010463.a.a.a.a.f	ENSGT00940000161168.j	ENSGT00390000002689.h	ENSGT00940000159891.c	ENSGT00940000161232.k	ENSGT00940000155331.B.b	ENSGT00940000155224.c.a.e #22	ENSGT00390000015137	ENSGT00950000183066.a.b.a.b.l	ENSGT00940000157009.c.b	ENSGT00940000155769.`b.b.c	ENSGT01090000260250.a	ENSGT01090000260750.a	ENSGT00640000091492.b.b	ENSGT01030000235711	ENSGT00940000158250.d.a.b	ENSGT01010000228730	ENSGT00390000003422.d	ENSGT00940000156230.o.a	ENSGT00950000182905.b.b	ENSGT00940000160725	ENSGT00950000182932.C.a
River trout	MODERN SPECIES	7	ENSSTUG00000017751	smarcd1 (ENSSTUG00000017777)	ENSSTUG00000018086	ENSSTUG00000018177	ENSSTUG00000018181	ENSSTUG00000018188	ENSSTUG00000018192	ENSSTUG00000018204	gls2b (ENSSTUG00000018235)	rdh5 (ENSSTUG00000018698)	bloc1s1 (ENSSTUG00000018718)	ITGA7 (ENSSTUG00000018756)	ENSSTUG00000019121	ENSSTUG00000019135	ENSSTUG00000019223	COL2A1 (ENSSTUG00000021109) #22	ENSSTUG00000024893	ENSSTUG00000024897	ENSSTUG00000024931	ENSSTUG00000024953	ENSSTUG00000025083	ANKRD60 (ENSSTUG00000025574)	ENSSTUG00000025595	rab22a (ENSSTUG00000025819)	vapb (ENSSTUG00000025827)	ENSSTUG00000025856	ENSSTUG00000025863	APCDD1L (ENSSTUG00000025869)	ENSSTUG00000025873	SRC (ENSSTUG00000025955)	ENSSTUG00000027449
Atlantic salmon	MODERN SPECIES	14	ENSSSAG00000105877	ENSSSAG00000106190	ENSSSAG00000042994	ENSSSAG00000110229	cers5 (ENSSSAG00000043031)	smarcd1 (ENSSSAG00000067559)	ENSSSAG00000071023	ENSSSAG00000086986	gls2b (ENSSSAG00000071268)	RDH5 (ENSSSAG00000073617)	bloc1s1 (ENSSSAG00000073619)	ITGA7 (ENSSSAG00000073644)	ENSSSAG00000087521	ENSSSAG00000110845	ENSSSAG00000120437	ENSSSAG00000075845 #22	ENSSSAG00000088354	ENSSSAG00000076704	ENSSSAG00000094735	ENSSSAG00000067423	ANKRD60 (ENSSSAG00000094422)	ENSSSAG00000094865	ENSSSAG00000063936	rab22a (ENSSSAG00000063861)	ENSSSAG00000063854	vapb (ENSSSAG00000063841)	ENSSSAG00000081854	APCDD1L (ENSSSAG00000063823)	ENSSSAG00000112282	ENSSSAG00000053471	ENSSSAG00000083747
Oncorhynchus	ANCESTRAL SPECIES	205											ENSGT00390000002689.h.b	ENSGT00940000159891.c	ENSGT00940000161232.k	ENSGT00940000160712	ENSGT00940000155331.B.b	ENSGT00940000155224.c.a.e #22
Oncorhynchus_a	ANCESTRAL SPECIES	293											ENSGT00390000002689.h.b	ENSGT00940000159891.c	ENSGT00940000161232.k	ENSGT00940000160712	ENSGT00940000155331.B.b	ENSGT00940000155224.c.a.e #22
Coho salmon	MODERN SPECIES	25	ENSOKIG00005003959	ENSOKIG00005003953	cers5 (ENSOKIG00005003924)	SMARCD1 (ENSOKIG00005003707)	ENSOKIG00005003499	ENSOKIG00005003447	ENSOKIG00005003442	ENSOKIG00005003435	ENSOKIG00005003434	gls2b (ENSOKIG00005002739)	rdh5 (ENSOKIG00005002638)	bloc1s1 (ENSOKIG00005002625)	ITGA7 (ENSOKIG00005002324)	ENSOKIG00005002184	ENSOKIG00005001835	COL2A1 (ENSOKIG00005001719) #22	ENSOKIG00005001684	ENSOKIG00005001679	ENSOKIG00005001676	ENSOKIG00005001567	ENSOKIG00005001542	ENSOKIG00005001540	ANKRD60 (ENSOKIG00005001533)	ENSOKIG00005001488	rab22a (ENSOKIG00005001451)	ENSOKIG00005001442	ENSOKIG00005001439	vapb (ENSOKIG00005001429)	APCDD1L (ENSOKIG00005001421)	ENSOKIG00005001413	ENSOKIG00005001408
Rainbow trout	MODERN SPECIES	28	cers5 (ENSOMYG00000075534)	ENSOMYG00000029990	ENSOMYG00000062884	ENSOMYG00000056542	ENSOMYG00000051033	ENSOMYG00000050503	ENSOMYG00000030008	gls2b (ENSOMYG00000030014)	ENSOMYG00000056223	RDH5 (ENSOMYG00000030061)	bloc1s1 (ENSOMYG00000030090)	ENSOMYG00000027542	ITGA7 (ENSOMYG00000030133)	ENSOMYG00000030184	ENSOMYG00000030704	ENSOMYG00000071787 #22	ENSOMYG00000026119	ENSOMYG00000025744	ANKRD60 (ENSOMYG00000025727)	ENSOMYG00000025450	rab22a (ENSOMYG00000025193)	ENSOMYG00000025179	vapb (ENSOMYG00000025143)	APCDD1L (ENSOMYG00000025125)	ENSOMYG00000025094	ENSOMYG00000025038	ENSOMYG00000024995	cyp24a1 (ENSOMYG00000024854)	ENSOMYG00000024765	ENSOMYG00000024786	ENSOMYG00000065453
Salmoninae	ANCESTRAL SPECIES	101	ENSGT01030000234515.a.a.a.k.d	ENSGT00390000003114.e.a.b	ENSGT00940000156629.a.b	ENSGT00940000168601.c.b	ENSGT01030000234528.B.b.a.a.a.c.b.u.a	ENSGT01030000234528.B.b.a.a.a.c.b.u.b	ENSGT00390000010463.a.a.a.a.e	ENSGT00940000161168.i	ENSGT00390000002689.g	ENSGT00940000159891.d	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000160712	ENSGT00940000155331.B.a	ENSGT00390000016619.b	ENSGT00940000155224.c.a.f #22	ENSGT00940000154360.A.a	ENSGT00390000010265.d	ENSGT00390000010265.c.b	ENSGT00940000159006.c.a.b	ENSGT00940000154129.gd.b	ENSGT00970000198185	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763.h	ENSGT00940000157748	ENSGT00940000161293.d	ENSGT00940000161314	ENSGT00990000205462.b	ENSGT00950000183081.a.a.b
Huchen	DUPLICATION
Huchen	MODERN SPECIES	4314													ENSHHUG00000049408	ENSHHUG00000049405	ENSHHUG00000049402 #22	ENSHHUG00000049398 #22	ENSHHUG00000049396
Huchen	MODERN SPECIES	4314														ENSHHUG00000049408	ENSHHUG00000049405	ENSHHUG00000049402 #22	ENSHHUG00000049398 #22	ENSHHUG00000049396
Salmoninae_a	ANCESTRAL SPECIES	29	ENSGT01030000234515.a.a.a.k.d	ENSGT00390000003114.e.a.b	ENSGT00940000156629.a.b	ENSGT00940000164727.db.a	ENSGT00940000165535.e	ENSGT01030000234528.B.b.a.a.a.c.b.u.a	ENSGT01030000234528.B.b.a.a.a.c.b.u.b	ENSGT00390000010463.a.a.a.a.e	ENSGT00940000161168.i	ENSGT00390000002689.g	ENSGT00940000159891.d	ENSGT00390000015021	ENSGT00940000161232.l	ENSGT00940000155331.B.a	ENSGT00390000016619.b	ENSGT00940000155224.c.a.f #22	ENSGT00940000154360.A.a	ENSGT00390000010265.d	ENSGT00940000159006.c.a.b	ENSGT00940000154129.gd.a.b	ENSGT00970000198185	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763.h	ENSGT00940000157748	ENSGT00940000161293.d	ENSGT00940000161314	ENSGT00990000205462.b	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b.b
Salmo	ANCESTRAL SPECIES	33	ENSGT01030000234515.a.a.a.k.d	ENSGT00390000003114.e.a.b	ENSGT00940000156629.a.b	ENSGT00940000164727.db.a	ENSGT00940000165535.e	ENSGT01030000234528.B.b.a.a.a.c.b.u.a	ENSGT01030000234528.B.b.a.a.a.c.b.u.b	ENSGT00390000010463.a.a.a.a.e	ENSGT00940000161168.i	ENSGT00390000002689.g	ENSGT00940000159891.d	ENSGT00390000015021	ENSGT00940000161232.l	ENSGT00940000155331.B.a	ENSGT00390000016619.b	ENSGT00940000155224.c.a.f #22	ENSGT00940000154360.A.a	ENSGT00390000010265.d	ENSGT00940000159006.c.a.b	ENSGT00940000154129.gd.a.b	ENSGT00970000198185	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763.h	ENSGT00940000157748	ENSGT00940000161293.d	ENSGT00940000161314	ENSGT00990000205462.b	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b.b
Atlantic salmon	MODERN SPECIES	3	smarcd1 (ENSSSAG00000043397)	asic1b (ENSSSAG00000047167)	ENSSSAG00000087361	ENSSSAG00000120768	ENSSSAG00000055016	ENSSSAG00000055002	ENSSSAG00000087837	gls2b (ENSSSAG00000055116)	RDH5 (ENSSSAG00000058768)	bloc1s1 (ENSSSAG00000058802)	ITGA7 (ENSSSAG00000058863)	npff (ENSSSAG00000059544)	ENSSSAG00000059561	ENSSSAG00000089742	ENSSSAG00000063960	ENSSSAG00000064261 #22	ENSSSAG00000110532	ENSSSAG00000004165	MAP3K12 (ENSSSAG00000004308)	PCBP2 (ENSSSAG00000005732)	ENSSSAG00000086826	ENSSSAG00000098140	ENSSSAG00000114492	ENSSSAG00000083134	AMHR2 (ENSSSAG00000005763)	ENSSSAG00000005784	sp1 (ENSSSAG00000005792)	ENSSSAG00000005801	tarbp2 (ENSSSAG00000005813)	sp7 (ENSSSAG00000005832)	igsf8 (ENSSSAG00000090217)
River trout	MODERN SPECIES	5	smarcd1 (ENSSTUG00000016029)	asic1b (ENSSTUG00000016407)	ENSSTUG00000016678	ENSSTUG00000016682	CELA1 (ENSSTUG00000016694)	ENSSTUG00000016735	gls2b (ENSSTUG00000016763)	ENSSTUG00000017292	rdh5 (ENSSTUG00000017306)	bloc1s1 (ENSSTUG00000017326)	ITGA7 (ENSSTUG00000017362)	npffl (ENSSTUG00000017512)	ENSSTUG00000017520	ENSSTUG00000017564	nckap1l (ENSSTUG00000003769)	COL2A1 (ENSSTUG00000005142) #22	ENSSTUG00000005207	myg1 (ENSSTUG00000005219)	MAP3K12 (ENSSTUG00000005231)	PCBP2 (ENSSTUG00000005298)	ENSSTUG00000005467	ENSSTUG00000005497	ENSSTUG00000005588	ENSSTUG00000005605	sp1 (ENSSTUG00000005612)	ENSSTUG00000005625	tarbp2 (ENSSTUG00000005649)	sp7 (ENSSTUG00000005662)	soat2 (ENSSTUG00000005685)	KIF5A (ENSSTUG00000005729)	ENSSTUG00000005869
Oncorhynchus	ANCESTRAL SPECIES	1	ENSGT01030000234515.a.a.a.k.d	ENSGT00390000003114.e.a.b	ENSGT00940000156629.a.b	ENSGT00940000164727.db.a	ENSGT00940000165535.e	ENSGT01030000234528.B.b.a.a.a.c.b.u.a	ENSGT01030000234528.B.b.a.a.a.c.b.u.b	ENSGT00390000010463.a.a.a.a.e	ENSGT00940000161168.i	ENSGT00390000002689.g	ENSGT00940000159891.d	ENSGT00390000015021	ENSGT00940000161232.l	ENSGT00940000155331.B.a	ENSGT00390000016619.b	ENSGT00940000155224.c.a.f #22	ENSGT00940000154360.A.a	ENSGT00390000010265.c.a	ENSGT00390000010265.c.b	ENSGT00940000159006.c.a.b	ENSGT00940000154129.gd.a.b	ENSGT00970000198185	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804.o	ENSGT00940000160763.h	ENSGT00940000157748	ENSGT00940000161293.d	ENSGT00940000161314	ENSGT00990000205462.b	ENSGT00950000183081.a.a.b
Rainbow trout	MODERN SPECIES	8	asic1b (ENSOMYG00000032449)	ENSOMYG00000049086	ENSOMYG00000049787	ENSOMYG00000056096	ENSOMYG00000029112	ENSOMYG00000060523	gls2b (ENSOMYG00000029215)	RDH5 (ENSOMYG00000061136)	bloc1s1 (ENSOMYG00000029265)	ITGA7 (ENSOMYG00000070698)	ENSOMYG00000029311	ENSOMYG00000063844	ENSOMYG00000029370	ENSOMYG00000029605	ENSOMYG00000047065	ENSOMYG00000050357 #22	ENSOMYG00000029943	ENSOMYG00000048522	ENSOMYG00000030136	ENSOMYG00000071560	ENSOMYG00000075519	MAP3K12 (ENSOMYG00000030167)	PCBP2 (ENSOMYG00000030233)	prr13 (ENSOMYG00000030290)	ENSOMYG00000030312	AMHR2 (ENSOMYG00000030326)	ENSOMYG00000030352	SP1 (ENSOMYG00000030362)	ENSOMYG00000075823	ENSOMYG00000030432	sp7 (ENSOMYG00000030402)
Oncorhynchus_a	ANCESTRAL SPECIES	54	ENSGT01090000260174.c	ENSGT00940000169926.a	ENSGT00390000003114.e.a.b	ENSGT00940000156629.a.b	ENSGT00940000164727.db.a	ENSGT00940000165535.e	ENSGT01030000234528.B.b.a.a.a.c.b.u.a	ENSGT01030000234528.B.b.a.a.a.c.b.u.b	ENSGT00390000010463.a.a.a.a.e	ENSGT00940000161168.i	ENSGT00940000159891.d	ENSGT00390000015021	ENSGT01090000262700	ENSGT00940000155331.B.a	ENSGT00390000016619.b	ENSGT00940000155224.c.a.f #22	ENSGT00940000154360.A.a	ENSGT00390000010265.c.a	ENSGT00390000010265.c.b	ENSGT00940000159006.c.a.b	ENSGT00940000154129.gd.a.b	ENSGT00970000198185	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804.o	ENSGT00940000160763.h	ENSGT00940000157748	ENSGT00940000161293.d	ENSGT00940000161314	ENSGT00990000205462.b	ENSGT00950000183081.a.a.b
Coho salmon	MODERN SPECIES		smarcd1 (ENSOKIG00005017726)	ENSOKIG00005017949	ENSOKIG00005018122	ENSOKIG00005018130	ENSOKIG00005018138	CELA1 (ENSOKIG00005018672)	ENSOKIG00005018711	GLS2 (ENSOKIG00005018748)	ENSOKIG00005019100	ITGA7 (ENSOKIG00005019140)	npffl (ENSOKIG00005019299)	ENSOKIG00005019343	ENSOKIG00005019369	ENSOKIG00005019653	nckap1l (ENSOKIG00005019777)	COL2A1 (ENSOKIG00005022243) #22	ENSOKIG00005022277	myg1 (ENSOKIG00005022280)	ENSOKIG00005022290	ENSOKIG00005022297	ENSOKIG00005022303	MAP3K12 (ENSOKIG00005022361)	ENSOKIG00005023180	PCBP2 (ENSOKIG00005023223)	ENSOKIG00005023356	ENSOKIG00005023367	AMHR2 (ENSOKIG00005023388)	ENSOKIG00005023404	SP1 (ENSOKIG00005023422)	ENSOKIG00005023433	tarbp2 (ENSOKIG00005023447)
Northern pike	MODERN SPECIES	16	CELA1 (ENSELUG00000016032)	CELA1 (ENSELUG00000016072)	ENSELUG00000015913	ENSELUG00000015755	smarcd1 (ENSELUG00000015713)	gpd1b (ENSELUG00000015681)	cers5 (ENSELUG00000015654)	ENSELUG00000015633	BCDIN3D (ENSELUG00000015623)	ENSELUG00000015610	npffl (ENSELUG00000000577)	ENSELUG00000015549	ENSELUG00000000573	ENSELUG00000026207	nckap1l (ENSELUG00000015487)	COL2A1 (ENSELUG00000034350) #22	ENSELUG00000026579	ENSELUG00000015439	ccndbp1 (ENSELUG00000015428)	ENSELUG00000015408	ENSELUG00000024769	ENSELUG00000015369	rab22a (ENSELUG00000015343)	vapb (ENSELUG00000015329)	ENSELUG00000029712	APCDD1L (ENSELUG00000015296)	SRC (ENSELUG00000015278)	MANBL (ENSELUG00000026809)	ENSELUG00000015195	cyp24a1 (ENSELUG00000015177)	ENSELUG00000015158
Osteoglossiformes	ANCESTRAL SPECIES	34	ENSGT01030000234515.a.a.a	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000158414	ENSGT00940000168601	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000160712	ENSGT00390000016619.b	ENSGT00940000155224.c.a #22	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT01060000252161	ENSGT00940000160885	ENSGT00940000167008	ENSGT00940000157804	ENSGT00940000160763	ENSGT00940000157748	ENSGT00940000161293	ENSGT00940000161314	ENSGT00950000183081.a.a.b	ENSGT00940000159439.b	ENSGT00390000003427
Asian bonytongue	MODERN SPECIES	14	ENSSFOG00015026296	ENSSFOG00015029562	ENSSFOG00015027307	ENSSFOG00015025574	ENSSFOG00015032238	ENSSFOG00015030118	ENSSFOG00015028781	gls2b (ENSSFOG00015013928)	rdh5 (ENSSFOG00015013894)	bloc1s1 (ENSSFOG00015026403)	ITGA7 (ENSSFOG00015013843)	npffl (ENSSFOG00015033293)	PPP1R1A (ENSSFOG00015029572)	PDE1B (ENSSFOG00015013758)	nckap1l (ENSSFOG00015026764)	col2a1b (ENSSFOG00015013432) #22	ENSSFOG00015013386	myg1 (ENSSFOG00015013355)	MAP3K12 (ENSSFOG00015013294)	PCBP2 (ENSSFOG00015013231)	ENSSFOG00015030843	AMHR2 (ENSSFOG00015013135)	psmf1 (ENSSFOG00015024482)	TMEM74B (ENSSFOG00015013109)	blcap (ENSSFOG00015032539)	ripor3 (ENSSFOG00015013027)	CHD6 (ENSSFOG00015012920)	rbl1 (ENSSFOG00015012816)	PTPRT (ENSSFOG00015012703)	pigu (ENSSFOG00015012619)	osgn1 (ENSSFOG00015012606)
P. kingsleyae	MODERN SPECIES	51	cers5 (ENSPKIG00000024634)	COX14 (ENSPKIG00000024660)	gpd1b (ENSPKIG00000024669)	smarcd1 (ENSPKIG00000024684)	ENSPKIG00000024713	ENSPKIG00000024723	cela1.3 (ENSPKIG00000024733)	gls2b (ENSPKIG00000024748)	rdh5 (ENSPKIG00000024770)	bloc1s1 (ENSPKIG00000024779)	ITGA7 (ENSPKIG00000001224)	npffl (ENSPKIG00000001314)	PPP1R1A (ENSPKIG00000001339)	PDE1B (ENSPKIG00000001413)	nckap1l (ENSPKIG00000001551)	col2a1b (ENSPKIG00000001771) #22	ENSPKIG00000001911	myg1 (ENSPKIG00000001941)	MAP3K12 (ENSPKIG00000002087)	PCBP2 (ENSPKIG00000002205)	AMHR2 (ENSPKIG00000002261)	ENSPKIG00000002298	sp1 (ENSPKIG00000002335)	ENSPKIG00000002388	tarbp2 (ENSPKIG00000002455)	sp7 (ENSPKIG00000002485)	igsf8 (ENSPKIG00000002498)	soat2 (ENSPKIG00000002516)	KIF5A (ENSPKIG00000002603)	ENSPKIG00000002638	dctn2 (ENSPKIG00000002672)
Osteoglossocephalai	ANCESTRAL SPECIES	252								ENSGT00940000155514.d	ENSGT00390000005874.i	ENSGT00940000154583.f	ENSGT00390000017131	ENSGT01100000263573.b.b	ENSGT00390000003114.e.a.a	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000159439.a	ENSGT00950000182883.b.a.b.b	ENSGT00390000002762.a.a.b.b	ENSGT00940000161040	ENSGT00720000108866	ENSGT00490000043380.b	ENSGT01100000263545.a.b.c.b
Clupeocephala	ANCESTRAL SPECIES	335														ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00990000205462	ENSGT00940000159439.a	ENSGT00950000183092.a.d.b	ENSGT00950000182883.b.a.b.b	ENSGT00390000002762.a.a.b.b	ENSGT00940000161040.b	ENSGT00720000108866	ENSGT00490000043380.b	ENSGT01100000263545.a.b.c.b
Otomorpha	ANCESTRAL SPECIES	271					ENSGT00940000163873.c.a	ENSGT00940000155615.i.b	ENSGT00940000154583.f	ENSGT00390000017131	ENSGT00940000166028	ENSGT00950000182846.a.a.b.b	ENSGT00940000161090.B.c.b.b.b	ENSGT01100000263573.b.b	ENSGT00390000003114.e.a.a	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00990000205462	ENSGT00940000159439.a	ENSGT00950000183092.a.d.b	ENSGT00940000161040.b	ENSGT00720000108866	ENSGT00490000043380.b	ENSGT01100000263545.a.b.c.b	ENSGT00940000167348	ENSGT00940000164142	ENSGT00940000156300.l	ENSGT01090000261049	ENSGT00940000155769.`b.a
Clupeiformes	ANCESTRAL SPECIES	154	ENSGT00940000158393	ENSGT00940000161798	ENSGT00390000007075	ENSGT00940000163342.a.a.b.e	ENSGT00940000163873.c.a	ENSGT00940000155615.i.b	ENSGT00940000154583.f	ENSGT00390000017131	ENSGT00950000182846.a.a.b.b	ENSGT00940000161090.B.c.b.b.b	ENSGT01100000263573.b.b	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00940000154663.a.a	ENSGT00390000009446	ENSGT00640000091558	ENSGT00390000007159
Atlantic herring	MODERN SPECIES		nr2c2 (ENSCHAG00000024228)	ENSCHAG00000024212	wdr46 (ENSCHAG00000024207)	sult1st3 (ENSCHAG00000024205)	ssuh2rs1 (ENSCHAG00000024187)	grip2a (ENSCHAG00000023254)	slc6a6a (ENSCHAG00000022868)	ABTB1 (ENSCHAG00000022805)	dnase1l4.1 (ENSCHAG00000022692)	ENSCHAG00000022674	ENSCHAG00000022665	gpd1a (ENSCHAG00000022645)	asic1a (ENSCHAG00000022515)	spryd4 (ENSCHAG00000022481)	GLS2 (ENSCHAG00000020304)	col2a1a (ENSCHAG00000017343) #22	chmp4bb (ENSCHAG00000017253)	aaas (ENSCHAG00000016239)	mrps25 (ENSCHAG00000016157)	RBSN (ENSCHAG00000015990)	ENSCHAG00000015957	SLA (ENSCHAG00000015798)	tg (ENSCHAG00000015044)	ccn4b (ENSCHAG00000015018)	ndrg1b (ENSCHAG00000014598)	ENSCHAG00000014577	ccdc12 (ENSCHAG00000014479)	NBEAL2 (ENSCHAG00000011726)	ENSCHAG00000011666	SETD2 (ENSCHAG00000010089)	ENSCHAG00000010045
Denticle herring	MODERN SPECIES	17	ENSDCDG00000020933	tbc1d16 (ENSDCDG00000020935)	rpl27 (ENSDCDG00000021157)	slc25a39 (ENSDCDG00000021168)	rpl3 (ENSDCDG00000021526)	ENSDCDG00000021538	cacng2a (ENSDCDG00000021542)	ENSDCDG00000021543	ENSDCDG00000021561	cep112 (ENSDCDG00000023266)	ENSDCDG00000023428	CYTH3 (ENSDCDG00000024613)	SMIM10 (ENSDCDG00000026589)	spryd4 (ENSDCDG00000026590)	GLS2 (ENSDCDG00000026615)	col2a1a (ENSDCDG00000027795) #22	chmp4bb (ENSDCDG00000031567)	aaas (ENSDCDG00000031578)	mrps25 (ENSDCDG00000031631)	RBSN (ENSDCDG00000031637)	ELFN2 (ENSDCDG00000031655)	ENSDCDG00000031657	ENSDCDG00000031660	ENSDCDG00000031663	ENSDCDG00000031666	ENSDCDG00000031668	ENSDCDG00000031670	ENSDCDG00000031671	sgsm3 (ENSDCDG00000031678)	gtpbp1 (ENSDCDG00000031937)	lgals2a (ENSDCDG00000032434)
Otophysi	ANCESTRAL SPECIES	65					ENSGT00600000085557	ENSGT00390000012166.j	ENSGT00390000012166.i	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT01030000234564.a.a.b.a.f	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000159912	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000154171.A	ENSGT00390000012058.c.b	ENSGT00390000009368	ENSGT00940000158289.a.b.b	ENSGT00390000000819.b	ENSGT00940000160063.g.b	ENSGT00940000157682.A	ENSGT00940000165955.b	ENSGT00940000166378	ENSGT00940000165056.b
Characiphysae	ANCESTRAL SPECIES	30	ENSGT00950000182888.a.a.b	ENSGT00940000154690	ENSGT00940000164186.a.a	ENSGT00950000182913.B.f	ENSGT00950000182976.b.a	ENSGT00390000012166.j	ENSGT00390000012166.i	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT01030000234564.a.a.b.a.f	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000159912	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000154171.A	ENSGT00390000012058.c.b	ENSGT00390000009368	ENSGT00940000158289.a.b.b	ENSGT00390000000819.b	ENSGT00940000160063.g.b	ENSGT00940000157682.A	ENSGT00940000165955.b	ENSGT00940000166378	ENSGT00940000165056.b
Characiphysae_b	ANCESTRAL SPECIES	34	ENSGT00950000182888.a.a.b	ENSGT00940000154690	ENSGT00940000164186.a.a	ENSGT00950000182913.B.f	ENSGT00950000182976.b.a	ENSGT00390000012166.j	ENSGT00390000012166.i	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT01030000234564.a.a.b.a.f	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000159912	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000154171.A	ENSGT00390000012058.c.b	ENSGT00390000009368	ENSGT00940000158289.a.b.b	ENSGT00390000000819.b	ENSGT00940000160063.g.b	ENSGT00940000157682.A	ENSGT00940000165955.b	ENSGT00940000166378	ENSGT00940000165056.b
Characoidei	ANCESTRAL SPECIES	250						ENSGT00390000012166.j	ENSGT00390000012166.i	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT01030000234564.a.a.b.a.f	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000159912	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000154171.A
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	417						ENSPNAG00000022629	ENSPNAG00000022644	ALDH9A1 (ENSPNAG00000022695)	tmco1 (ENSPNAG00000022723)	uck2a (ENSPNAG00000022752)	magoh (ENSPNAG00000022755)	cpt2 (ENSPNAG00000022795)	porcn (ENSPNAG00000022862)	spryd4 (ENSPNAG00000022886)	GLS2 (ENSPNAG00000022910)	col2a1a (ENSPNAG00000023101) #22	cry3a (ENSPNAG00000023162)	GPR37L1 (ENSPNAG00000023181)	itpr3 (ENSPNAG00000023489)	alas2 (ENSPNAG00000023522)	ela2l (ENSPNAG00000023572)	ela2 (ENSPNAG00000005557)	ela2 (ENSPNAG00000006519)	fhad1 (ENSPNAG00000025061)	fhad1 (ENSPNAG00000025164)	ela2 (ENSPNAG00000025311)	ela2 (ENSPNAG00000007134)	ela2l (ENSPNAG00000026122)	alas2 (ENSPNAG00000004011)	itpr3 (ENSPNAG00000006525)	GPR37L1 (ENSPNAG00000026663)
Red-bellied piranha	MODERN SPECIES	417						ENSPNAG00000005813	ENSPNAG00000027299	ALDH9A1 (ENSPNAG00000027287)	tmco1 (ENSPNAG00000004197)	uck2a (ENSPNAG00000006830)	magoh (ENSPNAG00000027135)	cpt2 (ENSPNAG00000006666)	porcn (ENSPNAG00000027056)	spryd4 (ENSPNAG00000026950)	GLS2 (ENSPNAG00000006319)	col2a1a (ENSPNAG00000026935) #22	cry3a (ENSPNAG00000006144)	GPR37L1 (ENSPNAG00000026663)	itpr3 (ENSPNAG00000006525)	alas2 (ENSPNAG00000004011)	ela2l (ENSPNAG00000026122)	ela2 (ENSPNAG00000007134)	ela2 (ENSPNAG00000025311)	fhad1 (ENSPNAG00000025164)	fhad1 (ENSPNAG00000025061)	ela2 (ENSPNAG00000006519)	ela2 (ENSPNAG00000005557)	ela2l (ENSPNAG00000023572)	alas2 (ENSPNAG00000023522)	itpr3 (ENSPNAG00000023489)	GPR37L1 (ENSPNAG00000023181)
Channel catfish	MODERN SPECIES	24	calr (ENSIPUG00000001657)	TOR3A (ENSIPUG00000001675)	osbpl9 (ENSIPUG00000001760)	l (ENSIPUG00000001908)	depdc1 (ENSIPUG00000001960)	ENSIPUG00000001992	ENSIPUG00000002019	aldh9a1a (ENSIPUG00000002039)	Tmco1 (ENSIPUG00000002081)	uck2 (ENSIPUG00000002097)	cpt2 (ENSIPUG00000002112)	magoh (ENSIPUG00000002136)	porcn (ENSIPUG00000002165)	spryd4 (ENSIPUG00000002282)	gls2 (ENSIPUG00000002239)	col2a1 (ENSIPUG00000002310) #22	cry3a (ENSIPUG00000002461)	GPR37L1 (ENSIPUG00000002651)	itpr3 (ENSIPUG00000002672)	alas2 (ENSIPUG00000002878)	ela2l (ENSIPUG00000002910)	ela2 (ENSIPUG00000002982)	ENSIPUG00000003009	efhd2 (ENSIPUG00000003034)	TAF10 (ENSIPUG00000003048)	CAC1S (ENSIPUG00000003092)	tmem9 (ENSIPUG00000003332)	suv39h1b (ENSIPUG00000003345)	ENSIPUG00000003351	foxp3a (ENSIPUG00000003361)	tspy (ENSIPUG00000003393)
Cyprinoidei	ANCESTRAL SPECIES	7	ENSGT00940000165304	ENSGT00940000163250.C	ENSGT00950000183104.B.a.b.a.a.c	ENSGT00940000165447	ENSGT00600000085557	ENSGT00390000012166.j	ENSGT00390000012166.i	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT01030000234564.a.a.b.a.f	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00940000165925.d	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000159912	ENSGT01030000234528.B.a.a.a	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000154171.A.e	ENSGT00950000183462	ENSGT00390000014794.a	ENSGT00510000048586	ENSGT00510000048827	ENSGT00390000014490	ENSGT00390000016496	ENSGT00940000165603	ENSGT01000000214967
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	137	ENSGT00950000182916.b.c	ENSGT00980000201079	ENSGT00940000165304.a	ENSGT00940000163250.C.j	ENSGT00950000183104.B.a.b.a.a.c.a	ENSGT00940000165447.a	ENSGT00390000012166.j.c	ENSGT00940000163309.i	ENSGT00390000002659.d	ENSGT01020000230412.A.c.b.c.a.g	ENSGT00390000003156.b.k.a	ENSGT01060000248556.B.g	ENSGT01030000234564.a.a.b.a.f.f	ENSGT00940000159780.c	ENSGT00390000010463.a.a.a.b.d	ENSGT00940000155224.c.b.c #22	ENSGT00940000165925.d.a	ENSGT01100000263518.B.b.a.a.f	ENSGT00940000157078.f	ENSGT00940000159912.p	ENSGT01030000234528.B.a.a.a.c	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000154171.A.e.a	ENSGT00510000048586.a	ENSGT00510000048827.r.b
Cyprininae_a	ANCESTRAL SPECIES	129	ENSGT00390000005318.a.a.a.b	ENSGT00950000182916.b.c	ENSGT00940000165304.a	ENSGT00940000163250.C.j.a	ENSGT00950000183104.B.a.b.a.a.c.a	ENSGT00940000165447.a	ENSGT00390000012166.j.c	ENSGT00940000163309.i	ENSGT00390000002659.d	ENSGT01020000230412.A.c.b.c.a.g	ENSGT00390000003156.b.k.a	ENSGT01060000248556.B.g	ENSGT01030000234564.a.a.b.a.f.f	ENSGT00940000159780.c	ENSGT00390000010463.a.a.a.b.d	ENSGT00940000155224.c.b.c #22	ENSGT00940000165925.d.a	ENSGT01100000263518.B.b.a.a.f	ENSGT00940000157078.f	ENSGT00940000159912.p	ENSGT01030000234528.B.a.a.a.c	ENSGT01030000234528.B.a.a.b.a	ENSGT00940000154171.A.e.a	ENSGT00510000048586.a	ENSGT00510000048827.r.b
Common carp reference	MODERN SPECIES	23	ENSCCRG00000049893	ENSCCRG00000056624	ENSCCRG00000074277	ENSCCRG00000065166	fzr1a (ENSCCRG00000024217)	haus5 (ENSCCRG00000010931)	ENSCCRG00000010929	zgc:112962 (ENSCCRG00000010927)	ALDH9A1 (ENSCCRG00000068152)	tmco1 (ENSCCRG00000010916)	uck2a (ENSCCRG00000060367)	magoh (ENSCCRG00000010912)	cpt2 (ENSCCRG00000010911)	porcn (ENSCCRG00000072407)	ENSCCRG00000010900	col2a1a (ENSCCRG00000058874) #22	cry3a (ENSCCRG00000055194)	ENSCCRG00000055400	itpr3 (ENSCCRG00000081887)	alas2 (ENSCCRG00000057252)	ela2l (ENSCCRG00000073943)	ela2 (ENSCCRG00000057313)	ENSCCRG00000054101	AJAP1 (ENSCCRG00000002467)	NPHP4 (ENSCCRG00000078735)	dffb (ENSCCRG00000071149)	si:ch211-147a11.3 (ENSCCRG00000038413)	ENSCCRG00000017274	lrrc47 (ENSCCRG00000055501)	ENSCCRG00000040612	ENSCCRG00000004391
Golden-line barbel	MODERN SPECIES	74	ENSSGRG00000015780	dohh (ENSSGRG00000015783)	ENSSGRG00000015785	fzr1a (ENSSGRG00000015788)	haus5 (ENSSGRG00000015923)	ENSSGRG00000015925	ALDH9A1 (ENSSGRG00000015928)	tmco1 (ENSSGRG00000015929)	uck2a (ENSSGRG00000015951)	magoh (ENSSGRG00000015967)	cpt2 (ENSSGRG00000015981)	porcn (ENSSGRG00000015982)	spryd4 (ENSSGRG00000016065)	ENSSGRG00000016067	GLS2 (ENSSGRG00000016068)	col2a1a (ENSSGRG00000016114) #22	cry3a (ENSSGRG00000018959)	GPR37L1 (ENSSGRG00000018998)	ENSSGRG00000019001
Goldfish	MODERN SPECIES	48	MFSD12 (ENSCARG00000038914)	ENSCARG00000038726	ENSCARG00000038687	dohh (ENSCARG00000038662)	fzr1a (ENSCARG00000038535)	haus5 (ENSCARG00000038448)	ENSCARG00000038423	ALDH9A1 (ENSCARG00000036567)	uck2a (ENSCARG00000036479)	magoh (ENSCARG00000036439)	cpt2 (ENSCARG00000036425)	porcn (ENSCARG00000036395)	spryd4 (ENSCARG00000036383)	ENSCARG00000036378	GLS2 (ENSCARG00000035813)	col2a1a (ENSCARG00000027133) #22	cry3a (ENSCARG00000026443)	GPR37L1 (ENSCARG00000026409)	itpr3 (ENSCARG00000021476)	alas2 (ENSCARG00000021285)	ela2l (ENSCARG00000021245)	ela2 (ENSCARG00000021228)	fhad1 (ENSCARG00000021192)	ENSCARG00000021182	ENSCARG00000021161	sec22bb (ENSCARG00000021100)	npl (ENSCARG00000021037)	EDEM3 (ENSCARG00000019344)	ift81 (ENSCARG00000019154)	fnbp1a (ENSCARG00000018715)	anapc7 (ENSCARG00000018655)
Cyprininae	ANCESTRAL SPECIES	6	ENSGT00390000005318.a.a.a.a	ENSGT00950000182916.b.d	ENSGT00940000165304.b	ENSGT00950000183104.B.a.b.a.a.c.b	ENSGT00940000165447.b	ENSGT00390000012166.j.d	ENSGT00390000012166.i	ENSGT00940000163309.j	ENSGT00390000002659.c	ENSGT01020000230412.A.c.b.c.a.h	ENSGT00390000003156.b.k.b	ENSGT01060000248556.B.h	ENSGT01030000234564.a.a.b.a.f.e	ENSGT00940000159780.d	ENSGT00390000010463.a.a.a.b.c	ENSGT00940000155224.c.b.d #22	ENSGT00940000165925.d.b	ENSGT01100000263518.B.b.a.a.e	ENSGT00940000157078.e	ENSGT00940000159912.o	ENSGT01030000234528.B.a.a.a.d	ENSGT00950000183462	ENSGT00390000014794.a	ENSGT00510000048586.b	ENSGT00510000048827.r.a	ENSGT00390000014490.n	ENSGT00390000016496.f	ENSGT00940000165603.f	ENSGT00390000013405.g	ENSGT00530000063489.b.d	ENSGT01030000235198.b
Cyprininae_a	ANCESTRAL SPECIES	39	ENSGT00950000182916.b.d	ENSGT00940000165304.b	ENSGT00940000163250.C.j.b	ENSGT00950000183104.B.a.b.a.a.c.b	ENSGT00940000165447.b	ENSGT00390000012166.j.d	ENSGT00390000012166.i	ENSGT00940000163309.j	ENSGT00390000002659.c	ENSGT01020000230412.A.c.b.c.a.h	ENSGT00390000003156.b.k.b	ENSGT01060000248556.B.h	ENSGT01030000234564.a.a.b.a.f.e	ENSGT00940000159780.d	ENSGT00390000010463.a.a.a.b.c	ENSGT00940000155224.c.b.d #22	ENSGT00940000165925.d.b	ENSGT01100000263518.B.b.a.a.e	ENSGT00940000157078.e	ENSGT00940000159912.o	ENSGT01030000234528.B.a.a.a.d	ENSGT00950000183462	ENSGT00390000014794.a	ENSGT00510000048586.b	ENSGT00510000048827.r.a	ENSGT00390000014490.n	ENSGT00390000016496.f	ENSGT00390000016496.e	ENSGT00940000165603.e	ENSGT00390000013405.h	ENSGT00530000063489.b.c
Common carp reference	MODERN SPECIES	17	rexo1 (ENSCCRG00000047618)	zgc:101100 (ENSCCRG00000047566)	csnk1g2b (ENSCCRG00000003659)	ENSCCRG00000015807	ENSCCRG00000025413	fzr1a (ENSCCRG00000010959)	haus5 (ENSCCRG00000062060)	ENSCCRG00000069643	ENSCCRG00000068633	ALDH9A1 (ENSCCRG00000057246)	tmco1 (ENSCCRG00000075574)	uck2a (ENSCCRG00000005099)	ENSCCRG00000004977	porcn (ENSCCRG00000010908)	spryd4 (ENSCCRG00000058497)	col2a1a (ENSCCRG00000076714) #22	cry3a (ENSCCRG00000031205)	ENSCCRG00000067373	itpr3 (ENSCCRG00000031308)	alas2 (ENSCCRG00000062931)	ela2l (ENSCCRG00000031426)	fhad1 (ENSCCRG00000031431)	ENSCCRG00000010509	ENSCCRG00000078314	ENSCCRG00000004279	ENSCCRG00000074229	ENSCCRG00000055673	ENSCCRG00000060850	ENSCCRG00000062728	si:ch211-147a11.3 (ENSCCRG00000071747)	b3gnt7l (ENSCCRG00000017263)
Golden-line barbel	MODERN SPECIES	15	ENSSGRG00000017672	fzr1a (ENSSGRG00000017674)	ENSSGRG00000017691	ENSSGRG00000017693	zgc:112962 (ENSSGRG00000017694)	ALDH9A1 (ENSSGRG00000017696)	ENSSGRG00000017776	ENSSGRG00000017777	tmco1 (ENSSGRG00000017779)	uck2a (ENSSGRG00000017948)	magoh (ENSSGRG00000017995)	cpt2 (ENSSGRG00000018000)	porcn (ENSSGRG00000018001)	spryd4 (ENSSGRG00000018003)	GLS2 (ENSSGRG00000018004)	col2a1a (ENSSGRG00000018061) #22	GPR37L1 (ENSSGRG00000021688)	itpr3 (ENSSGRG00000021747)	alas2 (ENSSGRG00000027356)	ela2l (ENSSGRG00000027362)	ela2 (ENSSGRG00000027383)	fhad1 (ENSSGRG00000027525)	ENSSGRG00000027528	AJAP1 (ENSSGRG00000027530)	ENSSGRG00000027535	dffb (ENSSGRG00000027537)	si:ch211-147a11.3 (ENSSGRG00000027539)	b3gnt7l (ENSSGRG00000027540)	lrrc47 (ENSSGRG00000027548)	mad2l2 (ENSSGRG00000027553)	ENSSGRG00000027565
Goldfish	MODERN SPECIES	61	zgc:101100 (ENSCARG00000032253)	csnk1g2b (ENSCARG00000032289)	MFSD12 (ENSCARG00000032782)	ENSCARG00000033018	fzr1a (ENSCARG00000033193)	ENSCARG00000033334	zgc:112962 (ENSCARG00000033362)	ALDH9A1 (ENSCARG00000033408)	tmco1 (ENSCARG00000033579)	uck2a (ENSCARG00000033631)	magoh (ENSCARG00000033703)	cpt2 (ENSCARG00000033748)	porcn (ENSCARG00000033786)	spryd4 (ENSCARG00000033889)	GLS2 (ENSCARG00000033898)	col2a1a (ENSCARG00000034780) #22	cry3a (ENSCARG00000060573)	GPR37L1 (ENSCARG00000060638)	itpr3 (ENSCARG00000060859)	alas2 (ENSCARG00000063911)	ENSCARG00000063957	ENSCARG00000063970
Zebrafish	MODERN SPECIES	23	ENSDARG00000094192	ENSDARG00000092973	ENSDARG00000095539	ENSDARG00000069103	ENSDARG00000094336	zgc:112962 (ENSDARG00000069102)	aldh9a1a.2 (ENSDARG00000055331)	aldh9a1a.1 (ENSDARG00000069100)	tmco1 (ENSDARG00000069099)	uck2a (ENSDARG00000006074)	magoh (ENSDARG00000038635)	cpt2 (ENSDARG00000038618)	porcn (ENSDARG00000052558)	spryd4 (ENSDARG00000023309)	GLS2 (ENSDARG00000069095)	col2a1a (ENSDARG00000069093) #22	cry3a (ENSDARG00000069074)	itpr3 (ENSDARG00000061741)	GPR37L1 (ENSDARG00000056774)	alas2 (ENSDARG00000038643)	ela2l (ENSDARG00000056765)	ela2 (ENSDARG00000056744)	fhad1 (ENSDARG00000056723)	ENSDARG00000094473	ENSDARG00000094861	ENSDARG00000093080	AJAP1 (ENSDARG00000038655)	ENSDARG00000069014	dffb (ENSDARG00000009748)	si:ch211-147a11.3 (ENSDARG00000069009)	b3gnt7l (ENSDARG00000053133)
Euteleosteomorpha	ANCESTRAL SPECIES	11	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000177752	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00990000205462	ENSGT00940000159439.a	ENSGT00530000064137.a.a	ENSGT00950000183092.a.d.b	ENSGT00950000182883.b.a.b.b	ENSGT00390000002762.a.a.b.b	ENSGT00940000161040.b	ENSGT00720000108866	ENSGT00490000043380.b	ENSGT01100000263545.a.b.c.b	ENSGT00950000182810.A.a.a.b	ENSGT00940000167348
Acanthomorphata	ANCESTRAL SPECIES	3	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000177752	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b
Euacanthomorphacea	ANCESTRAL SPECIES	2	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000177752	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b
Percomorphaceae	ANCESTRAL SPECIES	7	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000177752	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b
Tiger tail seahorse	MODERN SPECIES	404	ENSHCOG00000019096	baz2a (ENSHCOG00000019107)	ptges3b (ENSHCOG00000019152)	ENSHCOG00000019193	prim1 (ENSHCOG00000019244)	rnd1a (ENSHCOG00000000736)	ddx23 (ENSHCOG00000019338)	cacnb3a (ENSHCOG00000019374)	ADCY6 (ENSHCOG00000019410)	G6PD (ENSHCOG00000019442)	gpd1a (ENSHCOG00000019471)	ENSHCOG00000019488	asic1a (ENSHCOG00000019514)	spryd4 (ENSHCOG00000019520)	GLS2 (ENSHCOG00000019713)	col2a1a (ENSHCOG00000019810) #22	aaas (ENSHCOG00000019828)	map3k12 (ENSHCOG00000019859)	pcbp2 (ENSHCOG00000019886)	ENSHCOG00000019924	pfkfb2a (ENSHCOG00000019938)	ENSHCOG00000019961	scube3 (ENSHCOG00000020006)	ENSHCOG00000020015	ANKS1A (ENSHCOG00000020105)	taf11 (ENSHCOG00000020114)	BLTP3A (ENSHCOG00000020148)	ilrun (ENSHCOG00000000713)	SPDEF (ENSHCOG00000020452)	pacsin1a (ENSHCOG00000020474)	SMIM29 (ENSHCOG00000020479)
Percomorphaceae_B	ANCESTRAL SPECIES	6	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000177752	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b
Ovalentaria	ANCESTRAL SPECIES	6	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000177752	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b
Atherinomorphae	ANCESTRAL SPECIES	3	ENSGT01050000247727	ENSGT00940000159490.h	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b	ENSGT00940000167932
Cyprinodontiformes	ANCESTRAL SPECIES	4	ENSGT01050000247727	ENSGT00940000159490.h	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b	ENSGT00940000167932
Aplocheiloidei	ANCESTRAL SPECIES		ENSGT00940000156037.b	ENSGT00940000159490.h	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b	ENSGT00940000167932
Mangrove rivulus	MODERN SPECIES	13	ENSKMAG00000012365	baz2a (ENSKMAG00000012331)	ptges3b (ENSKMAG00000012312)	naca (ENSKMAG00000012234)	prim1 (ENSKMAG00000012150)	rnd1a (ENSKMAG00000012113)	ddx23 (ENSKMAG00000012060)	cacnb3a (ENSKMAG00000011986)	ADCY6 (ENSKMAG00000011843)	ENSKMAG00000011803	G6PD (ENSKMAG00000011771)	gpd1a (ENSKMAG00000011745)	asic1a (ENSKMAG00000011700)	spryd4 (ENSKMAG00000011681)	GLS2 (ENSKMAG00000011645)	col2a1a (ENSKMAG00000011552) #22	aaas (ENSKMAG00000011524)	map3k12 (ENSKMAG00000011456)	pcbp2 (ENSKMAG00000011367)	DLGAP4 (ENSKMAG00000011302)	pfkfb2a (ENSKMAG00000011230)	ENSKMAG00000011207	scube3 (ENSKMAG00000011109)	ENSKMAG00000011073	ANKS1A (ENSKMAG00000010858)	taf11 (ENSKMAG00000010780)	BLTP3A (ENSKMAG00000010747)	ilrun (ENSKMAG00000010704)	pacsin1a (ENSKMAG00000010634)	ENSKMAG00000010586	hmga1a (ENSKMAG00000010571)
Turquoise killifish	MODERN SPECIES	1624	CABLES2B (ENSNFUG00015021730)	jph2 (ENSNFUG00015021726)	ENSNFUG00015021724	CABZ01112331.1 (ENSNFUG00015021717)	RND1 (ENSNFUG00015021714)	ENSNFUG00015021712	DDX23 (ENSNFUG00015021669)	cacnb3a (ENSNFUG00015020935)	ADCY6A (ENSNFUG00015019862)	ENSNFUG00015019803	G6PD (ENSNFUG00015018525)	GPD1A (ENSNFUG00015018465)	asic1a (ENSNFUG00015018020)	spryd4 (ENSNFUG00015017996)	GLS2 (ENSNFUG00015017215)	COL2A1A (ENSNFUG00015017019) #22	AAAS (ENSNFUG00015016928)	ENSNFUG00015016888	GID8B (ENSNFUG00015016866)	DNAJC5AA (ENSNFUG00015016851)	Nfu_g_1_001629 (ENSNFUG00015016845)	ppdpfa (ENSNFUG00015016834)	ENSNFUG00015016801	dnmt3ba (ENSNFUG00015016793)	ENSNFUG00015016782	taf10 (ENSNFUG00015016778)	OGFR (ENSNFUG00015016753)	KCNK15 (ENSNFUG00015016747)	SUPT20 (ENSNFUG00015015739)	EXOSC8 (ENSNFUG00015015661)	ALG5 (ENSNFUG00015015651)
Cyprinodontoidei	ANCESTRAL SPECIES	3	ENSGT01050000247727	ENSGT00940000159490.h	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b	ENSGT00940000167932
Poeciliinae	ANCESTRAL SPECIES	2	ENSGT01050000247727	ENSGT00940000159490.h	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b	ENSGT00940000167932
Poecilia	ANCESTRAL SPECIES	14	ENSGT01050000247727	ENSGT00940000159490.h	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b	ENSGT00940000167932
NAME_6	ANCESTRAL SPECIES	23													ENSGT00940000158414.w	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b	ENSGT00940000167932
Amazon molly	DUPLICATION
Amazon molly	MODERN SPECIES	318	eif4a2 (ENSPFOG00000004507)	SETD9 (ENSPFOG00000020072)	dcun1d1 (ENSPFOG00000004422)	ENSPFOG00000004021	ENSPFOG00000003781	ripk2 (ENSPFOG00000003638)	ENSPFOG00000024656	asip2b (ENSPFOG00000022501)	ENSPFOG00000003581	CNIH4 (ENSPFOG00000003577)	preb (ENSPFOG00000003574)	ADCY3 (ENSPFOG00000003233)	asic1a (ENSPFOG00000003152)	spryd4 (ENSPFOG00000003125)	GLS2 (ENSPFOG00000002805)	col2a1a (ENSPFOG00000000897) #22	aaas (ENSPFOG00000000480)
Amazon molly	MODERN SPECIES	370														spryd4 (ENSPFOG00000012152)	GLS2 (ENSPFOG00000011849)	col2a1a (ENSPFOG00000010436) #22	aaas (ENSPFOG00000010272)	map3k12 (ENSPFOG00000010164)	pcbp2 (ENSPFOG00000010086)	DLGAP4 (ENSPFOG00000010011)	pfkfb2a (ENSPFOG00000009728)	ENSPFOG00000024032	scube3 (ENSPFOG00000009325)	ENSPFOG00000009291	ANKS1A (ENSPFOG00000009029)	taf11 (ENSPFOG00000008998)	BLTP3A (ENSPFOG00000008598)	ilrun (ENSPFOG00000008533)	pacsin1a (ENSPFOG00000008472)	SMIM29 (ENSPFOG00000008463)	hmga1a (ENSPFOG00000008457)
Sailfin molly	MODERN SPECIES	1672													asic1a (ENSPLAG00000002400)	spryd4 (ENSPLAG00000002405)	GLS2 (ENSPLAG00000002418)	col2a1a (ENSPLAG00000003014) #22	aaas (ENSPLAG00000003100)	map3k12 (ENSPLAG00000003124)	pcbp2 (ENSPLAG00000003153)
Guppy	MODERN SPECIES	459	ENSPREG00000007227	ENSPREG00000007217	ptges3b (ENSPREG00000007204)	naca (ENSPREG00000007149)	prim1 (ENSPREG00000007112)	rnd1a (ENSPREG00000007098)	ddx23 (ENSPREG00000007074)	cacnb3a (ENSPREG00000007039)	ADCY6 (ENSPREG00000006979)	GALNT6 (ENSPREG00000006554)	G6PD (ENSPREG00000006447)	gpd1a (ENSPREG00000006424)	asic1a (ENSPREG00000006394)	spryd4 (ENSPREG00000006378)	GLS2 (ENSPREG00000006365)	col2a1a (ENSPREG00000006305) #22	aaas (ENSPREG00000006284)	map3k12 (ENSPREG00000006228)	pcbp2 (ENSPREG00000006202)	DLGAP4 (ENSPREG00000006184)	DLGAP4 (ENSPREG00000006175)	PFKFB2 (ENSPREG00000006145)	ENSPREG00000006107	scube3 (ENSPREG00000005568)	ENSPREG00000005475	ANKS1A (ENSPREG00000005426)	taf11 (ENSPREG00000005401)	BLTP3A (ENSPREG00000005378)	ilrun (ENSPREG00000005364)	ENSPREG00000005354	hmga1a (ENSPREG00000005345)
Platyfish	MODERN SPECIES		ENSXMAG00000017460	baz2a (ENSXMAG00000017451)	ptges3b (ENSXMAG00000017416)	ENSXMAG00000023786	prim1 (ENSXMAG00000017428)	rnd1a (ENSXMAG00000017409)	ddx23 (ENSXMAG00000017387)	cacnb3a (ENSXMAG00000017350)	ADCY6 (ENSXMAG00000017286)	ENSXMAG00000017275	G6PD (ENSXMAG00000017256)	gpd1a (ENSXMAG00000017239)	asic1a (ENSXMAG00000017207)	spryd4 (ENSXMAG00000021258)	GLS2 (ENSXMAG00000017173)	col2a1a (ENSXMAG00000016824) #22	aaas (ENSXMAG00000016820)	map3k12 (ENSXMAG00000016777)	pcbp2 (ENSXMAG00000021752)	DLGAP4 (ENSXMAG00000016762)	PFKFB2 (ENSXMAG00000016736)	ENSXMAG00000022642	scube3 (ENSXMAG00000016699)	ENSXMAG00000022061	ANKS1A (ENSXMAG00000016654)	taf11 (ENSXMAG00000016646)	BLTP3A (ENSXMAG00000016608)	ilrun (ENSXMAG00000022264)	pacsin1a (ENSXMAG00000016576)	SMIM29 (ENSXMAG00000016573)	hmga1a (ENSXMAG00000016571)
NAME_4	ANCESTRAL SPECIES	21	ENSGT00940000156037.b	ENSGT00940000159490.h	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b	ENSGT00940000167932
Mummichog	MODERN SPECIES	2226	ENSFHEG00000017731	baz2a (ENSFHEG00000017715)	ptges3b (ENSFHEG00000017698)	ENSFHEG00000017665	prim1 (ENSFHEG00000017591)	rnd1a (ENSFHEG00000017531)	ddx23 (ENSFHEG00000017499)	cacnb3a (ENSFHEG00000017360)	ADCY6 (ENSFHEG00000015489)	ENSFHEG00000015287	G6PD (ENSFHEG00000015039)	gpd1a (ENSFHEG00000014980)	asic1a (ENSFHEG00000014944)	spryd4 (ENSFHEG00000014914)	GLS2 (ENSFHEG00000014898)	col2a1a (ENSFHEG00000014769) #22	aaas (ENSFHEG00000009696)	map3k12 (ENSFHEG00000009675)	pcbp2 (ENSFHEG00000009608)	DLGAP4 (ENSFHEG00000009546)	PFKFB2 (ENSFHEG00000009537)	ENSFHEG00000009494	scube3 (ENSFHEG00000009478)	ENSFHEG00000009324	ANKS1A (ENSFHEG00000009266)	taf11 (ENSFHEG00000008968)	BLTP3A (ENSFHEG00000008944)	ilrun (ENSFHEG00000008788)	pacsin1a (ENSFHEG00000008762)	SMIM29 (ENSFHEG00000008742)	hmga1a (ENSFHEG00000008729)
Sheepshead minnow	MODERN SPECIES	619									ADCY6 (ENSCVAG00000016576)	ENSCVAG00000016554	G6PD (ENSCVAG00000016482)	GPD1 (ENSCVAG00000016439)	asic1a (ENSCVAG00000016399)	spryd4 (ENSCVAG00000016358)	GLS2 (ENSCVAG00000016354)	col2a1a (ENSCVAG00000016260) #22	aaas (ENSCVAG00000015868)	map3k12 (ENSCVAG00000015852)	pcbp2 (ENSCVAG00000015775)	DLGAP4 (ENSCVAG00000015727)	PFKFB2 (ENSCVAG00000015708)	ENSCVAG00000015619	scube3 (ENSCVAG00000015591)	ENSCVAG00000015482
Oryzias	ANCESTRAL SPECIES	4	ENSGT00940000156037.b	ENSGT00940000159490.h	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000158666.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b	ENSGT00940000167932
Oryzias_a	ANCESTRAL SPECIES		ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490.h	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT01090000260066.a.a.d.a.a	ENSGT00490000043415.k.a	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b
Japanese Medaka HdrR	MODERN SPECIES	21	mipb (ENSORLG00000012169)	ENSORLG00000028732	baz2a (ENSORLG00000012214)	ptges3b (ENSORLG00000012236)	ENSORLG00000012246	prim1 (ENSORLG00000012281)	rnd1a (ENSORLG00000012314)	ddx23 (ENSORLG00000012330)	cacnb3a (ENSORLG00000012349)	ADCY6 (ENSORLG00000012382)	G6PD (ENSORLG00000012416)	gpd1a (ENSORLG00000012433)	asic1a (ENSORLG00000012444)	spryd4 (ENSORLG00000012455)	GLS2 (ENSORLG00000012493)	col2a1a (ENSORLG00000012738) #22	aaas (ENSORLG00000012807)	map3k12 (ENSORLG00000012844)	pcbp2 (ENSORLG00000012872)	ENSORLG00000012896	pfkfb2a (ENSORLG00000012972)	ENSORLG00000012982	scube3 (ENSORLG00000013086)	ENSORLG00000013093	ANKS1A (ENSORLG00000013119)	taf11 (ENSORLG00000013132)	BLTP3A (ENSORLG00000013171)	ENSORLG00000023178	ILRUN (ENSORLG00000013188)	pacsin1a (ENSORLG00000013207)	SMIM29 (ENSORLG00000022781)
Chinese medaka	MODERN SPECIES	38	rbm38 (ENSOSIG00000015269)	mipb (ENSOSIG00000015270)	ENSOSIG00000015271	baz2a (ENSOSIG00000015272)	ptges3b (ENSOSIG00000015278)	ENSOSIG00000015280	prim1 (ENSOSIG00000015283)	ddx23 (ENSOSIG00000015287)	cacnb3a (ENSOSIG00000015610)	ADCY6 (ENSOSIG00000017442)	G6PD (ENSOSIG00000019376)	gpd1a (ENSOSIG00000019868)	asic1a (ENSOSIG00000019885)	spryd4 (ENSOSIG00000019911)	GLS2 (ENSOSIG00000019932)	col2a1a (ENSOSIG00000020234) #22	aaas (ENSOSIG00000023097)	map3k12 (ENSOSIG00000023118)	pcbp2 (ENSOSIG00000023126)	DLGAP4 (ENSOSIG00000023129)	pfkfb2a (ENSOSIG00000023250)	ENSOSIG00000023558	scube3 (ENSOSIG00000023565)	ENSOSIG00000023570	ANKS1A (ENSOSIG00000023579)	taf11 (ENSOSIG00000023585)	BLTP3A (ENSOSIG00000023588)	ENSOSIG00000023589	pacsin1a (ENSOSIG00000023593)	SMIM29 (ENSOSIG00000023597)	ENSOSIG00000023598
Oryzias_b	ANCESTRAL SPECIES	2	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490.h	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b	ENSGT00940000167932
Javanese ricefish	MODERN SPECIES	21	rbm38 (ENSOJAG00000015643)	mipb (ENSOJAG00000015653)	ENSOJAG00000015679	ptges3b (ENSOJAG00000015707)	naca (ENSOJAG00000015717)	prim1 (ENSOJAG00000015756)	RND1 (ENSOJAG00000015763)	ddx23 (ENSOJAG00000015790)	cacnb3a (ENSOJAG00000015882)	ADCY6 (ENSOJAG00000016210)	G6PD (ENSOJAG00000017504)	gpd1a (ENSOJAG00000017817)	asic1a (ENSOJAG00000017857)	spryd4 (ENSOJAG00000018039)	GLS2 (ENSOJAG00000018062)	col2a1a (ENSOJAG00000018902) #22	aaas (ENSOJAG00000023023)	map3k12 (ENSOJAG00000023237)	pcbp2 (ENSOJAG00000023362)	DLGAP4 (ENSOJAG00000023366)	pfkfb2a (ENSOJAG00000023547)	ENSOJAG00000023816	scube3 (ENSOJAG00000023855)	ENSOJAG00000023909	ENSOJAG00000023910	ANKS1A (ENSOJAG00000023912)	taf11 (ENSOJAG00000023920)	BLTP3A (ENSOJAG00000023922)	ilrun (ENSOJAG00000023925)	pacsin1a (ENSOJAG00000023927)	SMIM29 (ENSOJAG00000023933)
Indian medaka	MODERN SPECIES	23	mipb (ENSOMEG00000006781)	ENSOMEG00000006750	baz2a (ENSOMEG00000006706)	ptges3b (ENSOMEG00000006627)	RND1 (ENSOMEG00000000154)	ENSOMEG00000006550	prim1 (ENSOMEG00000006499)	ddx23 (ENSOMEG00000006453)	cacnb3a (ENSOMEG00000006382)	ADCY6 (ENSOMEG00000006294)	G6PD (ENSOMEG00000006150)	gpd1a (ENSOMEG00000006094)	asic1a (ENSOMEG00000000731)	spryd4 (ENSOMEG00000005981)	GLS2 (ENSOMEG00000006041)	col2a1a (ENSOMEG00000005965) #22	aaas (ENSOMEG00000005856)	map3k12 (ENSOMEG00000005820)	pcbp2 (ENSOMEG00000005759)	DLGAP4 (ENSOMEG00000005720)	ENSOMEG00000005701	PFKFB2 (ENSOMEG00000005685)	ENSOMEG00000005618	scube3 (ENSOMEG00000005579)	ENSOMEG00000005444	ANKS1A (ENSOMEG00000005364)	taf11 (ENSOMEG00000005158)	BLTP3A (ENSOMEG00000005127)	ilrun (ENSOMEG00000005106)	pacsin1a (ENSOMEG00000005086)	SMIM29 (ENSOMEG00000005067)
Ovalentaria_B	ANCESTRAL SPECIES	2	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000177752	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000163310.l	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d
Cichlidae	ANCESTRAL SPECIES		ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000177752	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000163310.l	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b	ENSGT00940000167932
Pseudocrenilabrinae	ANCESTRAL SPECIES	5	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000177752	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000163310.l	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b	ENSGT00940000167932
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	18	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000177752	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000163310.l	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b	ENSGT00940000167932
Haplochromini	ANCESTRAL SPECIES	20	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000177752	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000163310.l	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b	ENSGT00940000167932
Haplochromini_A	ANCESTRAL SPECIES	17	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000177752	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000163310.l	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b	ENSGT00940000167932
Haplochromini_B	ANCESTRAL SPECIES	14	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000177752	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b	ENSGT00940000177729	ENSGT01030000234648.a.b.a.a.a.f.a
Zebra mbuna	MODERN SPECIES	1103	ENSMZEG00005026043	baz2a (ENSMZEG00005026049)	ptges3b (ENSMZEG00005026058)	ENSMZEG00005026060	prim1 (ENSMZEG00005026078)	rnd1a (ENSMZEG00005026083)	ddx23 (ENSMZEG00005026086)	cacnb3a (ENSMZEG00005026094)	ADCY6 (ENSMZEG00005026101)	ENSMZEG00005026106	G6PD (ENSMZEG00005026108)	gpd1a (ENSMZEG00005026111)	asic1a (ENSMZEG00005026113)	spryd4 (ENSMZEG00005026114)	GLS2 (ENSMZEG00005026115)	col2a1a (ENSMZEG00005026136) #22	aaas (ENSMZEG00005026184)	map3k12 (ENSMZEG00005026185)	pcbp2 (ENSMZEG00005026186)	ENSMZEG00005026190	ENSMZEG00005026192	PFKFB2 (ENSMZEG00005026194)	ENSMZEG00005026196	scube3 (ENSMZEG00005026197)	ENSMZEG00005026201	ANKS1A (ENSMZEG00005026203)	taf11 (ENSMZEG00005026214)	BLTP3A (ENSMZEG00005026216)	ilrun (ENSMZEG00005026220)	pacsin1a (ENSMZEG00005026221)	SMIM29 (ENSMZEG00005026222)
P. nyererei	MODERN SPECIES	339	ENSPNYG00000021232	ENSPNYG00000021212	ENSPNYG00000021194	ptges3b (ENSPNYG00000021178)	ENSPNYG00000021142	prim1 (ENSPNYG00000021104)	rnd1a (ENSPNYG00000021081)	ddx23 (ENSPNYG00000021038)	cacnb3a (ENSPNYG00000021002)	ADCY6 (ENSPNYG00000020965)	ENSPNYG00000020952	gpd1a (ENSPNYG00000020930)	asic1a (ENSPNYG00000020907)	spryd4 (ENSPNYG00000020901)	GLS2 (ENSPNYG00000020883)	col2a1a (ENSPNYG00000019240) #22	aaas (ENSPNYG00000018888)	map3k12 (ENSPNYG00000018837)	pcbp2 (ENSPNYG00000018792)	ENSPNYG00000018763	ENSPNYG00000018720	PFKFB2 (ENSPNYG00000018657)	ENSPNYG00000018602	scube3 (ENSPNYG00000018503)	ENSPNYG00000018474	ANKS1A (ENSPNYG00000018443)	taf11 (ENSPNYG00000018423)	BLTP3A (ENSPNYG00000018412)	ilrun (ENSPNYG00000018391)	pacsin1a (ENSPNYG00000018149)	SMIM29 (ENSPNYG00000018092)
Burton s mouthbrooder	MODERN SPECIES	346	ENSHBUG00000012010	baz2a (ENSHBUG00000011999)	ptges3b (ENSHBUG00000011995)	ENSHBUG00000011988	prim1 (ENSHBUG00000000838)	rnd1a (ENSHBUG00000011893)	ddx23 (ENSHBUG00000011876)	cacnb3a (ENSHBUG00000011861)	ADCY6 (ENSHBUG00000000321)	ENSHBUG00000011636	G6PD (ENSHBUG00000011619)	gpd1a (ENSHBUG00000011593)	asic1a (ENSHBUG00000011562)	spryd4 (ENSHBUG00000011526)	GLS2 (ENSHBUG00000001190)	col2a1a (ENSHBUG00000011436) #22	aaas (ENSHBUG00000008871)	map3k12 (ENSHBUG00000008855)	pcbp2 (ENSHBUG00000008769)	DLGAP4 (ENSHBUG00000008711)	ENSHBUG00000008692	PFKFB2 (ENSHBUG00000008677)	ENSHBUG00000008603	scube3 (ENSHBUG00000008582)	ENSHBUG00000008402	ANKS1A (ENSHBUG00000008381)	taf11 (ENSHBUG00000008209)	BLTP3A (ENSHBUG00000008196)	ilrun (ENSHBUG00000008175)	pacsin1a (ENSHBUG00000008147)	SMIM29 (ENSHBUG00000008097)
Lyretail cichlid	MODERN SPECIES	334	ENSNBRG00000022823	ENSNBRG00000022838	ptges3b (ENSNBRG00000022841)	ENSNBRG00000022851	prim1 (ENSNBRG00000022901)	rnd1a (ENSNBRG00000022919)	ddx23 (ENSNBRG00000022928)	cacnb3a (ENSNBRG00000022952)	ADCY6 (ENSNBRG00000022971)	ENSNBRG00000022990	G6PD (ENSNBRG00000022998)	gpd1a (ENSNBRG00000023020)	asic1a (ENSNBRG00000023032)	spryd4 (ENSNBRG00000023040)	GLS2 (ENSNBRG00000023044)	col2a1a (ENSNBRG00000023099) #22	aaas (ENSNBRG00000023277)	map3k12 (ENSNBRG00000023300)	pcbp2 (ENSNBRG00000023314)	DLGAP4 (ENSNBRG00000023335)
Nile tilapia	MODERN SPECIES	12	ENSONIG00000035177	baz2a (ENSONIG00000017063)	ptges3b (ENSONIG00000029831)	naca (ENSONIG00000017056)	prim1 (ENSONIG00000017052)	rnd1 (ENSONIG00000034915)	ddx23 (ENSONIG00000017048)	cacnb3a (ENSONIG00000017045)	ADCY6 (ENSONIG00000017041)	ENSONIG00000035660	GPD1 (ENSONIG00000017034)	G6PD (ENSONIG00000017037)	asic1a (ENSONIG00000034165)	spryd4 (ENSONIG00000017030)	GLS2 (ENSONIG00000017028)	col2a1a (ENSONIG00000017019) #22	aaas (ENSONIG00000017015)	map3k12 (ENSONIG00000017012)	pcbp2 (ENSONIG00000017003)	ENSONIG00000030798	ENSONIG00000017000	PFKFB2 (ENSONIG00000016995)	ENSONIG00000027632	scube3 (ENSONIG00000016993)	ENSONIG00000016992	ANKS1A (ENSONIG00000016990)	taf11 (ENSONIG00000016989)	BLTP3A (ENSONIG00000016984)	ilrun (ENSONIG00000016983)	pacsin1a (ENSONIG00000016981)	ENSONIG00000029046
Midas cichlid	MODERN SPECIES		ENSACIG00000000015	ptges3b (ENSACIG00000000016)	naca (ENSACIG00000000017)	prim1 (ENSACIG00000000020)	rnd1a (ENSACIG00000000021)	ddx23 (ENSACIG00000000022)	cacnb3a (ENSACIG00000000023)	ADCY6 (ENSACIG00000000024)	ENSACIG00000000025	ENSACIG00000000026	G6PD (ENSACIG00000000027)	GPD1 (ENSACIG00000000028)	asic1a (ENSACIG00000000029)	spryd4 (ENSACIG00000000030)	GLS2 (ENSACIG00000000031)	col2a1a (ENSACIG00000000032) #22	aaas (ENSACIG00000000033)	map3k12 (ENSACIG00000000034)	pcbp2 (ENSACIG00000000035)	ENSACIG00000000036	ENSACIG00000000037	ENSACIG00000000038	PFKFB2 (ENSACIG00000000039)	ENSACIG00000000040	ENSACIG00000000041	scube3 (ENSACIG00000000042)	ENSACIG00000000043	ANKS1A (ENSACIG00000000044)	taf11 (ENSACIG00000000045)	BLTP3A (ENSACIG00000000046)	ilrun (ENSACIG00000000047)
Pomacentridae	ANCESTRAL SPECIES	2	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000160845	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000163310.l	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d
Pomacentridae_A	ANCESTRAL SPECIES	24					ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000160845	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000163310.l	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d
Amphiprion	ANCESTRAL SPECIES	15								ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000166246.A.h	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000163310.l	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d
Clown anemonefish	MODERN SPECIES	706					ntmt1 (ENSAOCG00000011698)	zcchc9 (ENSAOCG00000011664)	ENSAOCG00000011643	ADRA2A (ENSAOCG00000011626)	cacnb3a (ENSAOCG00000011603)	ADCY6 (ENSAOCG00000011541)	G6PD (ENSAOCG00000011433)	gpd1a (ENSAOCG00000011387)	asic1a (ENSAOCG00000011349)	spryd4 (ENSAOCG00000011302)	GLS2 (ENSAOCG00000011283)	col2a1a (ENSAOCG00000011186) #22	aaas (ENSAOCG00000011038)	map3k12 (ENSAOCG00000011018)	pcbp2 (ENSAOCG00000010959)	ENSAOCG00000000684
Orange clownfish	MODERN SPECIES	22	ENSAPEG00000016725	ENSAPEG00000016764	ENSAPEG00000016775	prim1 (ENSAPEG00000016812)	ddx23 (ENSAPEG00000016857)	rnd1a (ENSAPEG00000016875)	cacnb3a (ENSAPEG00000016908)	ADCY6 (ENSAPEG00000016959)	ENSAPEG00000017043	G6PD (ENSAPEG00000017119)	gpd1a (ENSAPEG00000017158)	asic1a (ENSAPEG00000017194)	spryd4 (ENSAPEG00000017282)	GLS2 (ENSAPEG00000017224)	ENSAPEG00000017291	col2a1a (ENSAPEG00000017315) #22	aaas (ENSAPEG00000017442)	map3k12 (ENSAPEG00000017464)	pcbp2 (ENSAPEG00000017523)	DLGAP4 (ENSAPEG00000017580)	ENSAPEG00000017647	pfkfb2a (ENSAPEG00000017662)	ENSAPEG00000017735	ENSAPEG00000017753	scube3 (ENSAPEG00000017769)	C1orf116 (ENSAPEG00000017825)	ANKS1A (ENSAPEG00000017865)	taf11 (ENSAPEG00000017987)	BLTP3A (ENSAPEG00000018013)	ilrun (ENSAPEG00000018121)	SPDEF (ENSAPEG00000018147)
Spiny chromis	MODERN SPECIES	583				ENSAPOG00000003867	prim1 (ENSAPOG00000003817)	rnd1a (ENSAPOG00000003783)	ddx23 (ENSAPOG00000003760)	cacnb3a (ENSAPOG00000003741)	ADCY6 (ENSAPOG00000003644)	GALNT6 (ENSAPOG00000003555)	G6PD (ENSAPOG00000003461)	gpd1a (ENSAPOG00000003433)	asic1a (ENSAPOG00000003411)	spryd4 (ENSAPOG00000003375)	GLS2 (ENSAPOG00000003368)	col2a1a (ENSAPOG00000003326) #22	aaas (ENSAPOG00000003177)	map3k12 (ENSAPOG00000003152)	pcbp2 (ENSAPOG00000003089)
Bicolor damselfish	MODERN SPECIES	559	baz2a (ENSSPAG00000016257)	ptges3b (ENSSPAG00000016316)	ENSSPAG00000016343	naca (ENSSPAG00000016360)	prim1 (ENSSPAG00000016433)	rnd1a (ENSSPAG00000016463)	ddx23 (ENSSPAG00000016482)	cacnb3a (ENSSPAG00000016503)	ADCY6 (ENSSPAG00000016535)	ENSSPAG00000016585	G6PD (ENSSPAG00000016676)	gpd1a (ENSSPAG00000016736)	asic1a (ENSSPAG00000016764)	spryd4 (ENSSPAG00000016788)	GLS2 (ENSSPAG00000016797)	col2a1a (ENSSPAG00000016836) #22	aaas (ENSSPAG00000016943)	map3k12 (ENSSPAG00000016973)	pcbp2 (ENSSPAG00000017005)	DLGAP4 (ENSSPAG00000017043)	ENSSPAG00000017072	PFKFB2 (ENSSPAG00000017118)
Percomorphaceae_C	ANCESTRAL SPECIES	4	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b
Eupercaria	ANCESTRAL SPECIES	4	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b
Tetraodontidae	ANCESTRAL SPECIES	2	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a.h	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT01000000217669	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b
Tetraodon	MODERN SPECIES	24	prkcbp1l (ENSTNIG00000012603)	zgc:113278 (ENSTNIG00000012602)	NCOA3 (ENSTNIG00000012601)	ENSTNIG00000012600	mipb (ENSTNIG00000012599)	ENSTNIG00000012598	baz2a (ENSTNIG00000012597)	ptges3b (ENSTNIG00000012596)	naca (ENSTNIG00000012595)	ADCY6 (ENSTNIG00000012594)	G6PD (ENSTNIG00000012593)	gpd1a (ENSTNIG00000012592)	asic1a (ENSTNIG00000012591)	spryd4 (ENSTNIG00000012590)	GLS2 (ENSTNIG00000012589)	col2a1a (ENSTNIG00000012588) #22	aaas (ENSTNIG00000012587)	map3k12 (ENSTNIG00000012586)	pcbp2 (ENSTNIG00000012585)	DLGAP4 (ENSTNIG00000012584)	pfkfb2a (ENSTNIG00000012583)	ENSTNIG00000012582	scube3 (ENSTNIG00000012581)	ANKS1A (ENSTNIG00000012580)	taf11 (ENSTNIG00000012579)	BLTP3A (ENSTNIG00000012578)	ilrun (ENSTNIG00000012577)	SPDEF (ENSTNIG00000001703)	pacsin1a (ENSTNIG00000012576)	ENSTNIG00000012574	GRM4 (ENSTNIG00000012573)
Eupecaria_A	ANCESTRAL SPECIES	4	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b
Ballan wrasse	MODERN SPECIES	4	tnfrsf9a (ENSLBEG00000011509)	ccdc187 (ENSLBEG00000011439)	uts2a (ENSLBEG00000011403)	CAMTA1 (ENSLBEG00000011296)	dnajc11a (ENSLBEG00000011155)	fbxo44.3 (ENSLBEG00000011094)	ENSLBEG00000011042	ENSLBEG00000011013	mfsd4ab (ENSLBEG00000010978)	ENSLBEG00000010940	G6PD (ENSLBEG00000010862)	GPD1 (ENSLBEG00000010811)	asic1a (ENSLBEG00000010758)	spryd4 (ENSLBEG00000010736)	GLS2 (ENSLBEG00000010632)	col2a1a (ENSLBEG00000010331) #22	aaas (ENSLBEG00000010250)	map3k12 (ENSLBEG00000010187)	pcbp2 (ENSLBEG00000010080)	DLGAP4 (ENSLBEG00000010025)	ENSLBEG00000009987	pfkfb2a (ENSLBEG00000009916)	ENSLBEG00000009848	scube3 (ENSLBEG00000009740)	ENSLBEG00000009698	ANKS1A (ENSLBEG00000009637)	taf11 (ENSLBEG00000009596)	BLTP3A (ENSLBEG00000009223)	ilrun (ENSLBEG00000009112)	SPDEF (ENSLBEG00000009095)	pacsin1a (ENSLBEG00000009020)
Eupecaria_B	ANCESTRAL SPECIES	5	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b
Perciformes	ANCESTRAL SPECIES	4	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b
Cottioidei	ANCESTRAL SPECIES	2	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000163310.l	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b
Stickleback	MODERN SPECIES	11	trh (ENSGACG00000002980)	TMCC1 (ENSGACG00000002982)	ENSGACG00000002985	ENSGACG00000002990	ENSGACG00000002993	ENSGACG00000002997	rnd1a (ENSGACG00000003002)	ddx23 (ENSGACG00000003024)	cacnb3a (ENSGACG00000003036)	ADCY6 (ENSGACG00000003042)	G6PD (ENSGACG00000003056)	gpd1a (ENSGACG00000003068)	asic1a (ENSGACG00000003075)	spryd4 (ENSGACG00000003092)	GLS2 (ENSGACG00000003096)	col2a1a (ENSGACG00000003112) #22	aaas (ENSGACG00000003128)	map3k12 (ENSGACG00000003194)	pcbp2 (ENSGACG00000003197)	DLGAP4 (ENSGACG00000003221)	pfkfb2a (ENSGACG00000003225)	ENSGACG00000003245	scube3 (ENSGACG00000003249)	ENSGACG00000003252	ANKS1A (ENSGACG00000003255)	taf11 (ENSGACG00000003275)	BLTP3A (ENSGACG00000003278)	ilrun (ENSGACG00000003293)	SPDEF (ENSGACG00000003298)	pacsin1a (ENSGACG00000003301)	SMIM29 (ENSGACG00000003322)
Perciformes_a	ANCESTRAL SPECIES	2	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b
Channel bull blenny	MODERN SPECIES	21	ptges3b (ENSCGOG00000009199)	ENSCGOG00000009195	ENSCGOG00000009172	prim1 (ENSCGOG00000009003)	rnd1a (ENSCGOG00000008988)	ddx23 (ENSCGOG00000008691)	cacnb3a (ENSCGOG00000006066)	ENSCGOG00000006027	ADCY6 (ENSCGOG00000005504)	ENSCGOG00000005479	G6PD (ENSCGOG00000004591)	gpd1a (ENSCGOG00000004404)	asic1a (ENSCGOG00000004180)	spryd4 (ENSCGOG00000004173)	GLS2 (ENSCGOG00000002572)	col2a1a (ENSCGOG00000002456) #22	aaas (ENSCGOG00000002273)	map3k12 (ENSCGOG00000002031)	pcbp2 (ENSCGOG00000001972)	ENSCGOG00000001967	pfkfb2a (ENSCGOG00000001061)	ENSCGOG00000001037	scube3 (ENSCGOG00000000833)	ENSCGOG00000000747	ANKS1A (ENSCGOG00000000723)	taf11 (ENSCGOG00000000721)	BLTP3A (ENSCGOG00000000711)	ilrun (ENSCGOG00000000707)	SPDEF (ENSCGOG00000000705)	pacsin1a (ENSCGOG00000000682)	SMIM29 (ENSCGOG00000000672)
Pike perch	MODERN SPECIES	31	mipb (ENSSLUG00000010904)	ENSSLUG00000010907	baz2a (ENSSLUG00000010915)	ptges3b (ENSSLUG00000010925)	naca (ENSSLUG00000010932)	prim1 (ENSSLUG00000010947)	rnd1a (ENSSLUG00000010959)	ddx23 (ENSSLUG00000010974)	cacnb3a (ENSSLUG00000011174)	ADCY6 (ENSSLUG00000012109)	G6PD (ENSSLUG00000013424)	gpd1a (ENSSLUG00000014844)	asic1a (ENSSLUG00000014869)	spryd4 (ENSSLUG00000014876)	GLS2 (ENSSLUG00000014900)	col2a1a (ENSSLUG00000015542) #22	aaas (ENSSLUG00000022524)	map3k12 (ENSSLUG00000022911)	pcbp2 (ENSSLUG00000022994)	DLGAP4 (ENSSLUG00000023132)	PFKFB2 (ENSSLUG00000023258)	ENSSLUG00000024519	scube3 (ENSSLUG00000024590)	ENSSLUG00000024756	ANKS1A (ENSSLUG00000024759)	taf11 (ENSSLUG00000024762)	BLTP3A (ENSSLUG00000024763)	ilrun (ENSSLUG00000024766)	SPDEF (ENSSLUG00000024768)	pacsin1a (ENSSLUG00000024771)	SMIM29 (ENSSLUG00000024779)
Eupecaria_C	ANCESTRAL SPECIES	5	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b
Gilthead seabream	MODERN SPECIES	21	mipb (ENSSAUG00010012471)	ENSSAUG00010012473	baz2a (ENSSAUG00010012475)	naca (ENSSAUG00010012484)	prim1 (ENSSAUG00010012495)	rnd1a (ENSSAUG00010012512)	ddx23 (ENSSAUG00010012518)	cacnb3a (ENSSAUG00010012697)	ADCY6 (ENSSAUG00010012879)	ENSSAUG00010013686	G6PD (ENSSAUG00010013690)	GPD1 (ENSSAUG00010013694)	asic1a (ENSSAUG00010013700)	spryd4 (ENSSAUG00010013713)	GLS2 (ENSSAUG00010013723)	col2a1a (ENSSAUG00010014288) #22	aaas (ENSSAUG00010014758)	map3k12 (ENSSAUG00010015130)	pcbp2 (ENSSAUG00010015135)	DLGAP4 (ENSSAUG00010015253)	ENSSAUG00010015256	ENSSAUG00010015258	snai1b (ENSSAUG00010015260)	ENSSAUG00010015264	GGT7 (ENSSAUG00010015267)	NCOA6 (ENSSAUG00010015268)	TOP1 (ENSSAUG00010015283)	plcg1 (ENSSAUG00010015476)	zhx3b (ENSSAUG00010015841)	rab5if (ENSSAUG00010015844)	dhx35 (ENSSAUG00010015849)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	15	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b
Large yellow croaker	MODERN SPECIES	18	ENSLCRG00005006723	baz2a (ENSLCRG00005006725)	ptges3b (ENSLCRG00005006726)	ENSLCRG00005006729	prim1 (ENSLCRG00005006862)	rnd1a (ENSLCRG00005006866)	ddx23 (ENSLCRG00005006872)	cacnb3a (ENSLCRG00005007064)	ADCY6 (ENSLCRG00005008911)	ENSLCRG00005009703	G6PD (ENSLCRG00005009721)	gpd1a (ENSLCRG00005011377)	asic1a (ENSLCRG00005011433)	spryd4 (ENSLCRG00005011754)	GLS2 (ENSLCRG00005011787)	col2a1a (ENSLCRG00005013638) #22	aaas (ENSLCRG00005014449)	map3k12 (ENSLCRG00005014710)	pcbp2 (ENSLCRG00005015371)	ENSLCRG00005015475	ENSLCRG00005015477	PFKFB2 (ENSLCRG00005015485)	ENSLCRG00005015669	scube3 (ENSLCRG00005015680)	ENSLCRG00005016047	ANKS1A (ENSLCRG00005016059)	taf11 (ENSLCRG00005016707)	BLTP3A (ENSLCRG00005016716)	ilrun (ENSLCRG00005016735)	tbc1d25 (ENSLCRG00005016736)	ndufb11 (ENSLCRG00005016751)
European seabass	MODERN SPECIES	14	ENSDLAG00005031473	ENSDLAG00005035077	baz2a (ENSDLAG00005025601)	ptges3b (ENSDLAG00005025592)	ENSDLAG00005025585	PRIM1 (ENSDLAG00005025578)	RND1 (ENSDLAG00005026619)	ddx23 (ENSDLAG00005028304)	cacnb3a (ENSDLAG00005025321)	ADCY6 (ENSDLAG00005024996)	ENSDLAG00005024919	ENSDLAG00005024857	ENSDLAG00005024825	ENSDLAG00005032344	ENSDLAG00005024747	ENSDLAG00005022827 #22	ENSDLAG00005024784	aaas (ENSDLAG00005022676)	ENSDLAG00005034247	ENSDLAG00005029050	pcbp2 (ENSDLAG00005022214)	ENSDLAG00005022197	ENSDLAG00005020550	ENSDLAG00005020455	SCUBE3 (ENSDLAG00005018821)	ENSDLAG00005018775	ANKS1A (ENSDLAG00005017188)	TAF11 (ENSDLAG00005027404)	BLTP3A (ENSDLAG00005016949)	ILRUN (ENSDLAG00005026599)	SPDEF (ENSDLAG00005016913)
Percomorphaceae_D	ANCESTRAL SPECIES	4	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b
Anabantaria	ANCESTRAL SPECIES	3	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00990000211309	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b
Anabantoidei	ANCESTRAL SPECIES	2	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00990000211309	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b
Climbing perch	MODERN SPECIES	20	ENSATEG00000016551	baz2a (ENSATEG00000016605)	ptges3b (ENSATEG00000016669)	ENSATEG00000027021	PRIM1 (ENSATEG00000016734)	RND1 (ENSATEG00000029476)	ddx23 (ENSATEG00000016800)	cacnb3a (ENSATEG00000016851)	ADCY6 (ENSATEG00000016910)	ENSATEG00000025237	ENSATEG00000017066	ENSATEG00000017140	ENSATEG00000017148	spryd4 (ENSATEG00000026166)	ENSATEG00000017191	col2a1a (ENSATEG00000017520) #22	aaas (ENSATEG00000019204)	ENSATEG00000019222	pcbp2 (ENSATEG00000019272)	ENSATEG00000028543	ENSATEG00000019363	ENSATEG00000026104	SCUBE3 (ENSATEG00000019449)	ENSATEG00000019537	ANKS1A (ENSATEG00000019572)	ENSATEG00000019715	TAF11 (ENSATEG00000019727)	BLTP3A (ENSATEG00000019758)	ILRUN (ENSATEG00000019774)	SPDEF (ENSATEG00000019791)	pacsin1a (ENSATEG00000019801)
Siamese fighting fish	MODERN SPECIES	18	mipb (ENSBSLG00000011837)	ENSBSLG00000011886	baz2a (ENSBSLG00000011904)	ptges3b (ENSBSLG00000011971)	ENSBSLG00000012048	prim1 (ENSBSLG00000012152)	rnd1a (ENSBSLG00000012233)	ddx23 (ENSBSLG00000012263)	cacnb3a (ENSBSLG00000013440)	ADCY6 (ENSBSLG00000014835)	G6PD (ENSBSLG00000016098)	gpd1a (ENSBSLG00000016213)	asic1a (ENSBSLG00000016218)	spryd4 (ENSBSLG00000016268)	GLS2 (ENSBSLG00000016279)	col2a1a (ENSBSLG00000016502) #22	aaas (ENSBSLG00000020758)	map3k12 (ENSBSLG00000020784)	pcbp2 (ENSBSLG00000020835)	DLGAP4 (ENSBSLG00000021032)	tpd52l2b (ENSBSLG00000021148)	ENSBSLG00000021192	DNAJC5 (ENSBSLG00000021228)	adrm1 (ENSBSLG00000021279)	lama5 (ENSBSLG00000021337)	ppdpfb (ENSBSLG00000021702)	ptk6b (ENSBSLG00000021726)	ENSBSLG00000021746	nol4lb (ENSBSLG00000021764)	commd7 (ENSBSLG00000021797)	dnmt3bb.1 (ENSBSLG00000021846)
Zig-zag eel	MODERN SPECIES	21	mipb (ENSMAMG00000024136)	ENSMAMG00000024137	baz2a (ENSMAMG00000024138)	ptges3b (ENSMAMG00000024139)	ENSMAMG00000024140	PRIM1 (ENSMAMG00000024142)	RND1 (ENSMAMG00000026731)	ddx23 (ENSMAMG00000024144)	cacnb3a (ENSMAMG00000024145)	ADCY6 (ENSMAMG00000024147)	ENSMAMG00000024148	ENSMAMG00000024149	ENSMAMG00000024150	spryd4 (ENSMAMG00000024152)	ENSMAMG00000024151	col2a1a (ENSMAMG00000024153) #22	aaas (ENSMAMG00000024154)	ENSMAMG00000024155	pcbp2 (ENSMAMG00000024156)	ENSMAMG00000024157	ENSMAMG00000027810	ENSMAMG00000024159	ENSMAMG00000024160	SCUBE3 (ENSMAMG00000024161)	ENSMAMG00000028001	ANKS1A (ENSMAMG00000024163)	TAF11 (ENSMAMG00000027828)	BLTP3A (ENSMAMG00000024165)	ILRUN (ENSMAMG00000024166)	SPDEF (ENSMAMG00000024167)	PACSIN1 (ENSMAMG00000024168)
Carangaria	ANCESTRAL SPECIES	2	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b
Carangaria_A	ANCESTRAL SPECIES	1	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b
Seriola	ANCESTRAL SPECIES	8	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c	ENSGT00950000182835.d.a.k.b	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000155806.c.a	ENSGT00390000013228	ENSGT00600000084428.a	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d	ENSGT00410000025882.b	ENSGT00940000167932
Greater amberjack	MODERN SPECIES	16	ENSSDUG00000022579	baz2a (ENSSDUG00000022561)	ptges3b (ENSSDUG00000022549)	naca (ENSSDUG00000022504)	prim1 (ENSSDUG00000022489)	rnd1a (ENSSDUG00000022482)	ddx23 (ENSSDUG00000022459)	cacnb3a (ENSSDUG00000021854)	ADCY6 (ENSSDUG00000021753)	ENSSDUG00000021676	G6PD (ENSSDUG00000021650)	gpd1a (ENSSDUG00000021640)	asic1a (ENSSDUG00000021626)	spryd4 (ENSSDUG00000021613)	GLS2 (ENSSDUG00000021565)	col2a1a (ENSSDUG00000021429) #22	aaas (ENSSDUG00000021393)	map3k12 (ENSSDUG00000021359)	pcbp2 (ENSSDUG00000021325)	DLGAP4 (ENSSDUG00000021316)	PFKFB2 (ENSSDUG00000021276)
Yellowtail amberjack	MODERN SPECIES	2725												gpd1a (ENSSLDG00000009435)	asic1a (ENSSLDG00000009392)	spryd4 (ENSSLDG00000009378)	GLS2 (ENSSLDG00000009348)	col2a1a (ENSSLDG00000009047) #22	aaas (ENSSLDG00000008933)	map3k12 (ENSSLDG00000008892)	pcbp2 (ENSSLDG00000008839)	DLGAP4 (ENSSLDG00000008798)	PFKFB2 (ENSSLDG00000008710)	ENSSLDG00000008665	scube3 (ENSSLDG00000008542)	ENSSLDG00000008472	ANKS1A (ENSSLDG00000008265)	taf11 (ENSSLDG00000008190)	BLTP3A (ENSSLDG00000008151)	ilrun (ENSSLDG00000008116)	SPDEF (ENSSLDG00000008101)	pacsin1a (ENSSLDG00000008056)	ENSSLDG00000008031
Barramundi perch	MODERN SPECIES	219	ENSLCAG00010019451	baz2a (ENSLCAG00010019456)	ptges3b (ENSLCAG00010019469)	naca (ENSLCAG00010019483)	prim1 (ENSLCAG00010019513)	rnd1a (ENSLCAG00010019525)	ddx23 (ENSLCAG00010019549)	cacnb3a (ENSLCAG00010019670)	ADCY6 (ENSLCAG00010019746)	ENSLCAG00010020183	G6PD (ENSLCAG00010020221)	gpd1a (ENSLCAG00010020236)	asic1a (ENSLCAG00010020273)	spryd4 (ENSLCAG00010020286)	GLS2 (ENSLCAG00010020328)	col2a1a (ENSLCAG00010020433) #22	aaas (ENSLCAG00010020541)	map3k12 (ENSLCAG00010020637)	pcbp2 (ENSLCAG00010020695)	DLGAP4 (ENSLCAG00010020766)	ENSLCAG00010020768	pfkfb2a (ENSLCAG00010021070)
Pleuronectoidei	ANCESTRAL SPECIES	38	ENSGT00940000156260.c	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00390000011466	ENSGT00940000158666.a.b	ENSGT00940000155606.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000155308.c
Tongue sole	MODERN SPECIES	1	ENSCSEG00000021400	zgc:171857 (ENSCSEG00000021401)	WNT7A (ENSCSEG00000021402)	ENSCSEG00000021424	NUP210 (ENSCSEG00000021425)	IQSEC1 (ENSCSEG00000021426)	zgc:77375 (ENSCSEG00000021427)	cnbpa (ENSCSEG00000021428)	raf1a (ENSCSEG00000021429)	syn2a (ENSCSEG00000021430)	VGLL4 (ENSCSEG00000021431)	slc6a1a (ENSCSEG00000021432)	ENSCSEG00000021433	spryd4 (ENSCSEG00000021434)	GLS2 (ENSCSEG00000021435)	col2a1a (ENSCSEG00000021471) #22	aaas (ENSCSEG00000021476)	map3k12 (ENSCSEG00000021484)	pcbp2 (ENSCSEG00000021490)	ENSCSEG00000021501	rnf41 (ENSCSEG00000021504)	dgkaa (ENSCSEG00000021507)	tamalin (ENSCSEG00000021514)	nr4a1 (ENSCSEG00000021518)	zgc:56699 (ENSCSEG00000021520)	letmd1 (ENSCSEG00000021523)	cd63 (ENSCSEG00000021524)	nemp1 (ENSCSEG00000021526)	ormdl2 (ENSCSEG00000021527)	ENSCSEG00000021528	PAN2 (ENSCSEG00000021529)
Turbot	MODERN SPECIES	2	ptges3b (ENSSMAG00000028069)	ENSSMAG00000000479	ENSSMAG00000000474	ENSSMAG00000037775	ENSSMAG00000000502	PRIM1 (ENSSMAG00000000511)	RND1 (ENSSMAG00000000522)	ddx23 (ENSSMAG00000000529)	cacnb3a (ENSSMAG00000000545)	ADCY6 (ENSSMAG00000000552)	ENSSMAG00000000568	ENSSMAG00000000595	ENSSMAG00000000601	spryd4 (ENSSMAG00000032069)	ENSSMAG00000000622	col2a1a (ENSSMAG00000000707) #22	aaas (ENSSMAG00000005124)	ENSSMAG00000005155	pcbp2 (ENSSMAG00000005182)	ENSSMAG00000033675	PACSIN1 (ENSSMAG00000005246)	SPDEF (ENSSMAG00000005268)	ILRUN (ENSSMAG00000030395)	BLTP3A (ENSSMAG00000005317)	TAF11 (ENSSMAG00000005281)	ANKS1A (ENSSMAG00000005327)	ENSSMAG00000005398	SCUBE3 (ENSSMAG00000005434)	ENSSMAG00000005530	ENSSMAG00000005545	ENSSMAG00000029604
Pinecone sodierfish	MODERN SPECIES	21	ENSMMDG00005021326	ptges3b (ENSMMDG00005021335)	naca (ENSMMDG00005021342)	prim1 (ENSMMDG00005000170)	rnd1a (ENSMMDG00005000187)	ENSMMDG00005000197	ddx23 (ENSMMDG00005000280)	cacnb3a (ENSMMDG00005000498)	ADCY6 (ENSMMDG00005000512)	ENSMMDG00005000533	G6PD (ENSMMDG00005000629)	gpd1a (ENSMMDG00005000827)	asic1a (ENSMMDG00005000856)	spryd4 (ENSMMDG00005000857)	GLS2 (ENSMMDG00005000862)	col2a1a (ENSMMDG00005000945) #22	aaas (ENSMMDG00005006424)	map3k12 (ENSMMDG00005007583)	pcbp2 (ENSMMDG00005007623)	ENSMMDG00005008637	PFKFB2 (ENSMMDG00005008736)	ENSMMDG00005013597	scube3 (ENSMMDG00005013637)	ENSMMDG00005016655	ANKS1A (ENSMMDG00005016664)	taf11 (ENSMMDG00005016698)	BLTP3A (ENSMMDG00005016702)	ilrun (ENSMMDG00005016703)	SPDEF (ENSMMDG00005016706)	pacsin1a (ENSMMDG00005016719)	SMIM29 (ENSMMDG00005016725)
Cod	MODERN SPECIES		ENSGMOG00000016251	ENSGMOG00000029410	PRIM1 (ENSGMOG00000001218)	ENSGMOG00000001195	PTGES3 (ENSGMOG00000001184)	BAZ2A (ENSGMOG00000001100)	RND1 (ENSGMOG00000029984)	ddx23 (ENSGMOG00000009592)	cacnb3a (ENSGMOG00000009603)	ADCY6 (ENSGMOG00000009612)	ENSGMOG00000035039	ENSGMOG00000009634	ENSGMOG00000009659	spryd4 (ENSGMOG00000009666)	ENSGMOG00000009670	col2a1a (ENSGMOG00000009692) #22	aaas (ENSGMOG00000009746)	ENSGMOG00000009765	pcbp2 (ENSGMOG00000009787)	ENSGMOG00000028292	ENSGMOG00000023581	ENSGMOG00000009821	SCUBE3 (ENSGMOG00000009879)	ENSGMOG00000035233	ANKS1A (ENSGMOG00000009954)	TAF11 (ENSGMOG00000010004)	BLTP3A (ENSGMOG00000010011)	ILRUN (ENSGMOG00000010041)	SPDEF (ENSGMOG00000023283)	pacsin1a (ENSGMOG00000010048)	ENSGMOG00000026218
Protacanthopterygii	ANCESTRAL SPECIES	90	ENSGT00940000156037.b	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468.k.a	ENSGT00390000011466.e	ENSGT00940000158666.a.a.b	ENSGT00940000155606.a.b	ENSGT00950000182837.b.a.b	ENSGT00940000155687.e.a	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a	ENSGT00390000003114.e.a.a	ENSGT00940000158414	ENSGT00940000159780	ENSGT00390000010463.a.a.a.b	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00990000205462.a	ENSGT00940000159439.a	ENSGT00530000064137.a.a	ENSGT00950000183092.a.d.b	ENSGT00950000182883.b.a.b.b	ENSGT00940000161040.b	ENSGT00720000108866	ENSGT00490000043380.b	ENSGT01100000263545.a.b.c.b	ENSGT00950000182810.A.a.a.b	ENSGT00940000167348	ENSGT00940000164142
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	29	ENSGT00940000159490.f	ENSGT00940000154256.ac.d	ENSGT00440000033468.k.a.a	ENSGT00390000011466.f	ENSGT00940000158666.a.a.b.b	ENSGT00990000211101	ENSGT00940000155606.a.b	ENSGT00950000182837.b.a.b.d	ENSGT00940000155687.e.a	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a.f	ENSGT00390000003114.e.a.a.g	ENSGT00940000158414.j.a	ENSGT00940000159780.j	ENSGT00390000010463.a.a.a.b.h	ENSGT00940000155224.c.b.g #22	ENSGT00390000009446.g	ENSGT00940000159006.c.b.d	ENSGT00940000154129.hd.c	ENSGT00990000205462.a	ENSGT00940000159439.a.b	ENSGT00530000064137.a.a.a	ENSGT00970000197062	ENSGT00950000183092.a.d.b.b	ENSGT00950000182883.b.a.b.b.a	ENSGT01010000222294.c.b.b.b.c.a.b.a.a.b.a	ENSGT00940000161040.b.a.a	ENSGT00940000161040.b.a.b	ENSGT01010000222294.c.b.b.b.c.a.b.a.a.b.b	ENSGT00720000108866.d	ENSGT00490000043380.b.b
Salmoninae_a	ANCESTRAL SPECIES	26	ENSGT00940000159490.f	ENSGT00940000154256.ac.d	ENSGT00440000033468.k.a.a	ENSGT00390000011466.f	ENSGT00940000158666.a.a.b.b	ENSGT00990000211101	ENSGT00940000155606.a.b	ENSGT00950000182837.b.a.b.d	ENSGT00940000155687.e.a.f	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a.f	ENSGT00390000003114.e.a.a.g	ENSGT00940000158414.j.a	ENSGT00940000159780.j	ENSGT00390000010463.a.a.a.b.h	ENSGT00940000155224.c.b.g #22	ENSGT00390000009446.g	ENSGT00940000159006.c.b.d	ENSGT00940000154129.hd.c	ENSGT00990000205462.a	ENSGT00940000159439.a.b	ENSGT00530000064137.a.a.a	ENSGT00950000183092.a.d.b.b	ENSGT00950000182883.b.a.b.b.a	ENSGT01010000222294.c.b.b.b.c.a.b.a.a.b.a	ENSGT00940000161040.b.a.a	ENSGT00940000161040.b.a.b	ENSGT01010000222294.c.b.b.b.c.a.b.a.a.b.b	ENSGT00720000108866.d	ENSGT00490000043380.b.b	ENSGT01100000263545.a.b.c.b
Salmo	ANCESTRAL SPECIES	4	ENSGT00940000156260.c.a	ENSGT00940000159490.f	ENSGT00440000033468.k.a.a.b	ENSGT00390000011466.f	ENSGT00940000158666.a.a.b.b	ENSGT00990000211101	ENSGT00940000155606.a.a.b	ENSGT00950000182837.b.a.b.d	ENSGT00940000155687.e.a.f	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a.f	ENSGT00390000003114.e.a.a.g	ENSGT00940000158414.j.a	ENSGT00940000159780.j	ENSGT00390000010463.a.a.a.b.h	ENSGT00940000155224.c.b.g #22	ENSGT00390000009446.g	ENSGT00940000159006.c.b.d	ENSGT00940000154129.hd.c	ENSGT00990000205462.a	ENSGT00940000159439.a.b	ENSGT00530000064137.a.a.a	ENSGT00950000183092.a.d.b.b	ENSGT00950000182883.b.a.b.b.a	ENSGT01010000222294.c.b.b.b.c.a.b.a.a.b.a	ENSGT00940000161040.b.a.a	ENSGT00940000161040.b.a.b	ENSGT01010000222294.c.b.b.b.c.a.b.a.a.b.b	ENSGT01100000263492.b.b.b.a.a.b.a.a.b	ENSGT00720000108866.d	ENSGT00490000043380.b.b
Atlantic salmon	MODERN SPECIES	4	ENSSSAG00000120661	ENSSSAG00000103194	TEBP (ENSSSAG00000065960)	ENSSSAG00000065991	ENSSSAG00000066017	RND1 (ENSSSAG00000066025)	ddx23 (ENSSSAG00000065159)	cacnb3a (ENSSSAG00000066037)	ADCY6 (ENSSSAG00000068175)	ENSSSAG00000068495	G6PD (ENSSSAG00000069060)	ENSSSAG00000069214	ENSSSAG00000069240	spryd4 (ENSSSAG00000069903)	ENSSSAG00000103261	col2a1a (ENSSSAG00000069973) #22	map3k12 (ENSSSAG00000072079)	pcbp2 (ENSSSAG00000072352)	ENSSSAG00000083371	ENSSSAG00000072657	kif5aa (ENSSSAG00000072684)	ENSSSAG00000074125	stac3 (ENSSSAG00000074133)	ENSSSAG00000074147	ENSSSAG00000074149	nua4l (ENSSSAG00000074159)	ENSSSAG00000004170	ENSSSAG00000100112	ENSSSAG00000082420	viaat (ENSSSAG00000004209)	bpifcl (ENSSSAG00000004217)
River trout	MODERN SPECIES	23	ENSSTUG00000049292	baz2a (ENSSTUG00000049168)	ENSSTUG00000049107	prim1 (ENSSTUG00000049095)	RND1 (ENSSTUG00000049087)	ENSSTUG00000049084	ddx23 (ENSSTUG00000049079)	cacnb3a (ENSSTUG00000049062)	ADCY6 (ENSSTUG00000048491)	ENSSTUG00000048314	G6PD (ENSSTUG00000048132)	gpd1a (ENSSTUG00000048100)	asic1a (ENSSTUG00000048027)	spryd4 (ENSSTUG00000048011)	GLS2 (ENSSTUG00000047939)	col2a1a (ENSSTUG00000047832) #22	aaas (ENSSTUG00000047800)	map3k12 (ENSSTUG00000047698)	pcbp2 (ENSSTUG00000047636)	ENSSTUG00000047623	kif5aa (ENSSTUG00000047516)	ENSSTUG00000047500	stac3 (ENSSTUG00000047483)	ENSSTUG00000047473	ENSSTUG00000047470	ENSSTUG00000047468	ENSSTUG00000047463	actr5 (ENSSTUG00000047440)	SLC32A1 (ENSSTUG00000047431)	ENSSTUG00000047424	PRELID3B (ENSSTUG00000047418)
Oncorhynchus	ANCESTRAL SPECIES	7	ENSGT00940000159490.f	ENSGT00940000154256.ac.d	ENSGT00440000033468.k.a.a	ENSGT00390000011466.f	ENSGT00940000158666.a.a.b.b	ENSGT00990000211101	ENSGT00940000155606.a.b	ENSGT00950000182837.b.a.b.d	ENSGT00940000155687.e.a.f	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a.f	ENSGT00390000003114.e.a.a.g	ENSGT00940000158414.j.a	ENSGT00940000159780.j	ENSGT00390000010463.a.a.a.b.h	ENSGT00940000155224.c.b.g #22	ENSGT00390000009446.g	ENSGT00940000159006.c.b.d	ENSGT00940000154129.hd.c	ENSGT00990000205462.a	ENSGT00940000159439.a.b	ENSGT00530000064137.a.a.a	ENSGT00950000183092.a.d.b.b	ENSGT00950000182883.b.a.b.b.a	ENSGT01010000222294.c.b.b.b.c.a.b.a.a.b.a	ENSGT00940000161040.b.a.a	ENSGT00940000161040.b.a.b	ENSGT01010000222294.c.b.b.b.c.a.b.a.a.b.b	ENSGT01100000263492.b.b.b.a.a.b.a.a.b	ENSGT00490000043380.b.b	ENSGT01100000263545.a.b.c.b
Oncorhynchus_a	ANCESTRAL SPECIES	9	ENSGT00940000159490.f	ENSGT00940000154256.ac.d	ENSGT00440000033468.k.a.a	ENSGT00390000011466.f	ENSGT00940000158666.a.a.b.b	ENSGT00990000211101	ENSGT00940000155606.a.b	ENSGT00950000182837.b.a.b.d	ENSGT00940000155687.e.a.f	ENSGT00940000166246.B	ENSGT00530000063435.a.a.a.f	ENSGT00390000003114.e.a.a.g	ENSGT00940000158414.j.a	ENSGT00940000159780.j	ENSGT00390000010463.a.a.a.b.h	ENSGT00940000155224.c.b.g #22	ENSGT00390000009446.g	ENSGT00940000159006.c.b.d	ENSGT00940000154129.hd.c	ENSGT00990000205462.a	ENSGT00940000159439.a.b	ENSGT00530000064137.a.a.a	ENSGT00950000183092.a.d.b.b	ENSGT00950000182883.b.a.b.b.a	ENSGT01010000222294.c.b.b.b.c.a.b.a.a.b.a	ENSGT00940000161040.b.a.a	ENSGT00940000161040.b.a.b	ENSGT01010000222294.c.b.b.b.c.a.b.a.a.b.b	ENSGT01100000263492.b.b.b.a.a.b.a.a.b	ENSGT00490000043380.b.b	ENSGT01100000263545.a.b.c.b
Chinook salmon	MODERN SPECIES	14	mipb (ENSOTSG00005009716)	baz2a (ENSOTSG00005009714)	ptges3b (ENSOTSG00005009713)	ENSOTSG00005009706	RND1 (ENSOTSG00005009704)	ENSOTSG00005009703	ENSOTSG00005009702	cacnb3a (ENSOTSG00005009542)	ADCY6 (ENSOTSG00005008666)	ENSOTSG00005008634	G6PD (ENSOTSG00005008486)	gpd1a (ENSOTSG00005008484)	asic1a (ENSOTSG00005008206)	spryd4 (ENSOTSG00005008201)	GLS2 (ENSOTSG00005008189)	col2a1a (ENSOTSG00005006801) #22	aaas (ENSOTSG00005006707)	map3k12 (ENSOTSG00005006647)	pcbp2 (ENSOTSG00005006589)	ENSOTSG00005006588	kif5aa (ENSOTSG00005003254)	ENSOTSG00005003209	stac3 (ENSOTSG00005003150)	NXPH4 (ENSOTSG00005003145)	ENSOTSG00005003143	ENSOTSG00005003139	ENSOTSG00005003136	ENSOTSG00005003134	ENSOTSG00005003130	ENSOTSG00005003127	SLC32A1 (ENSOTSG00005002817)
Coho salmon	MODERN SPECIES	16	baz2a (ENSOKIG00005010151)	naca (ENSOKIG00005010073)	prim1 (ENSOKIG00005010009)	ENSOKIG00005009996	RND1 (ENSOKIG00005009985)	ENSOKIG00005009971	ddx23 (ENSOKIG00005009958)	cacnb3a (ENSOKIG00005009921)	ADCY6 (ENSOKIG00005009410)	ENSOKIG00005009299	G6PD (ENSOKIG00005008572)	gpd1a (ENSOKIG00005008467)	asic1a (ENSOKIG00005008313)	spryd4 (ENSOKIG00005008282)	GLS2 (ENSOKIG00005008155)	col2a1a (ENSOKIG00005007929) #22	aaas (ENSOKIG00005007403)	map3k12 (ENSOKIG00005006865)	pcbp2 (ENSOKIG00005006224)	kif5aa (ENSOKIG00005050671)	ENSOKIG00005050654	ENSOKIG00005050645	ENSOKIG00005050641	stac3 (ENSOKIG00005050637)	NXPH4 (ENSOKIG00005050630)	ENSOKIG00005050628	ENSOKIG00005050625	ENSOKIG00005050623	ENSOKIG00005050617	SLC32A1 (ENSOKIG00005050611)	ENSOKIG00005050605
Rainbow trout	MODERN SPECIES	7	mipb (ENSOMYG00000046401)	baz2a (ENSOMYG00000046366)	TEBP (ENSOMYG00000066051)	ENSOMYG00000046337	ENSOMYG00000046314	ENSOMYG00000049719	RND1 (ENSOMYG00000064744)	ddx23 (ENSOMYG00000046300)	ADCY6 (ENSOMYG00000045871)	ENSOMYG00000045759	ENSOMYG00000045351	ENSOMYG00000045745	ENSOMYG00000045168	spryd4 (ENSOMYG00000045145)	ENSOMYG00000045092	col2a1a (ENSOMYG00000045052) #22	aaas (ENSOMYG00000044997)	map3k12 (ENSOMYG00000044128)	pcbp2 (ENSOMYG00000043671)	ENSOMYG00000070924	kif5aa (ENSOMYG00000043175)	ENSOMYG00000043112	stac3 (ENSOMYG00000043087)	ENSOMYG00000061568	ENSOMYG00000066566	ENSOMYG00000043055	ENSOMYG00000062336	ENSOMYG00000043048	ENSOMYG00000043020	ENSOMYG00000065895	ENSOMYG00000043013
Huchen	MODERN SPECIES	918									ENSHHUG00000021332	G6PD (ENSHHUG00000021155)	gpd1a (ENSHHUG00000021056)	ASIC1 (ENSHHUG00000021007)	GLS2 (ENSHHUG00000020892)	ENSHHUG00000020889	ENSHHUG00000020886	ENSHHUG00000020881 #22	aaas (ENSHHUG00000020862)	map3k12 (ENSHHUG00000020845)	ENSHHUG00000020840	pcbp2 (ENSHHUG00000020653)	ENSHHUG00000020637	kif5aa (ENSHHUG00000019747)	ENSHHUG00000019723	stac3 (ENSHHUG00000019683)	NXPH4 (ENSHHUG00000019678)	ENSHHUG00000019675	ENSHHUG00000019670	ENSHHUG00000019657	ENSHHUG00000019641	actr5 (ENSHHUG00000019588)	SLC32A1 (ENSHHUG00000019582)
Salmoninae	ANCESTRAL SPECIES	50	ENSGT00950000183021.a.b.c.g	ENSGT00940000158489.a.a.c.a	ENSGT00940000156260.c.b	ENSGT00940000156037.b	ENSGT00940000159490.e	ENSGT00390000011466.e.b	ENSGT00940000158666.a.a.b.a	ENSGT00940000155606.a.a.a	ENSGT00950000182837.b.a.b.c	ENSGT00990000211309	ENSGT00530000063435.a.a.a.e	ENSGT00390000003114.e.a.a.h	ENSGT00940000158414.j.b	ENSGT00940000159780.i	ENSGT00390000010463.a.a.a.b.g	ENSGT00940000155224.c.b.h #22	ENSGT00390000009446.h	ENSGT00940000159006.c.b.c	ENSGT00940000154129.hd.d	ENSGT00940000159439.a.a	ENSGT00530000064137.a.a.b	ENSGT00950000183092.a.d.b.a	ENSGT00950000182883.b.a.b.b.b	ENSGT00940000161040.b.b	ENSGT00720000108866.c	ENSGT00490000043380.b.a	ENSGT00950000182810.A.a.a.b.f	ENSGT00940000164142.jc.b.b	ENSGT00940000155769.`b.a.b	ENSGT00940000154663.a.a.j	ENSGT00390000001804.jb
Huchen	MODERN SPECIES	139	NCOA3 (ENSHHUG00000032198)	rbm38 (ENSHHUG00000032190)	mipb (ENSHHUG00000032072)	ENSHHUG00000032062	baz2a (ENSHHUG00000032059)	ptges3b (ENSHHUG00000031977)	naca (ENSHHUG00000031910)	RND1 (ENSHHUG00000031905)	ddx23 (ENSHHUG00000031890)	cacnb3a (ENSHHUG00000031799)	G6PD (ENSHHUG00000031659)	GPD1 (ENSHHUG00000031531)	asic1a (ENSHHUG00000031519)	spryd4 (ENSHHUG00000031515)	GLS2 (ENSHHUG00000031430)	col2a1a (ENSHHUG00000031382) #22	aaas (ENSHHUG00000031365)	map3k12 (ENSHHUG00000031322)	pcbp2 (ENSHHUG00000031145)	kif5aa (ENSHHUG00000030936)	ENSHHUG00000030930	ENSHHUG00000030925	stac3 (ENSHHUG00000030911)	NXPH4 (ENSHHUG00000030904)	ENSHHUG00000030900	ENSHHUG00000030899	actr5 (ENSHHUG00000030894)	SLC32A1 (ENSHHUG00000030884)	PRELID3B (ENSHHUG00000030861)	atp5f1e (ENSHHUG00000030854)	ENSHHUG00000030846
Salmoninae_a	ANCESTRAL SPECIES	15	ENSGT00940000158489.a.a.c.a	ENSGT00940000156260.c.b	ENSGT00940000156037.b	ENSGT00940000159490.e	ENSGT00390000011466.e.b	ENSGT00940000158666.a.a.b.a	ENSGT00940000155606.a.a.a	ENSGT00950000182837.b.a.b.c	ENSGT00940000155687.e.a.e	ENSGT00990000211309	ENSGT00530000063435.a.a.a.e	ENSGT00390000003114.e.a.a.h	ENSGT00940000158414.j.b	ENSGT00940000159780.i	ENSGT00390000010463.a.a.a.b.g	ENSGT00940000155224.c.b.h #22	ENSGT00390000009446.h	ENSGT00940000159006.c.b.c	ENSGT00940000154129.hd.d	ENSGT00940000159439.a.a	ENSGT00530000064137.a.a.b	ENSGT00950000183092.a.d.b.a	ENSGT00950000182883.b.a.b.b.b	ENSGT00940000161040.b.b	ENSGT00720000108866.c	ENSGT00490000043380.b.a	ENSGT00950000182810.A.a.a.b.f	ENSGT00940000167348.a	ENSGT00940000164142.jc.b.a.a	ENSGT00940000164142.jc.b.b	ENSGT00940000156300.j.a
Oncorhynchus	ANCESTRAL SPECIES	5	ENSGT00940000156037.b	ENSGT00940000159490.e	ENSGT00940000154256.ac.c	ENSGT00440000033468.k.a.b	ENSGT00390000011466.e.a	ENSGT00940000158666.a.a.b.a	ENSGT00940000155606.a.a.a	ENSGT00950000182837.b.a.b.c	ENSGT00940000155687.e.a.e	ENSGT00990000211309	ENSGT00530000063435.a.a.a.e	ENSGT00390000003114.e.a.a.h	ENSGT00940000158414.j.b	ENSGT00940000159780.i	ENSGT00390000010463.a.a.a.b.g	ENSGT00940000155224.c.b.h #22	ENSGT00390000009446.h	ENSGT00940000159006.c.b.c	ENSGT00940000154129.hd.d	ENSGT00940000159439.a.a	ENSGT00530000064137.a.a.b	ENSGT00950000183092.a.d.b.a	ENSGT00950000182883.b.a.b.b.b	ENSGT00940000161040.b.b	ENSGT00720000108866.c	ENSGT00490000043380.b.a	ENSGT00950000182810.A.a.a.b.f	ENSGT00940000167348.a	ENSGT00940000164142.jc.b.a.a	ENSGT00940000156300.j.a	ENSGT00940000155769.`b.a.b
Rainbow trout	MODERN SPECIES	30	ENSOMYG00000036186	baz2a (ENSOMYG00000036198)	ptges3b (ENSOMYG00000036228)	ENSOMYG00000036291	ENSOMYG00000036386	RND1 (ENSOMYG00000036571)	ddx23 (ENSOMYG00000036623)	cacnb3a (ENSOMYG00000036674)	ENSOMYG00000070612	ADCY6 (ENSOMYG00000036935)	ENSOMYG00000039054	ENSOMYG00000039252	ENSOMYG00000039443	spryd4 (ENSOMYG00000039858)	ENSOMYG00000040060	col2a1a (ENSOMYG00000040994) #22	aaas (ENSOMYG00000039799)	map3k12 (ENSOMYG00000042290)	pcbp2 (ENSOMYG00000043165)	kif5aa (ENSOMYG00000043424)	ENSOMYG00000065278	ENSOMYG00000043503	stac3 (ENSOMYG00000043513)	ENSOMYG00000057656	ENSOMYG00000068283	ENSOMYG00000043554	ENSOMYG00000043568	ENSOMYG00000043587	ENSOMYG00000043618	ENSOMYG00000055959	ENSOMYG00000043646
Oncorhynchus_a	ANCESTRAL SPECIES	7	ENSGT00940000156037.b	ENSGT00940000159490.e	ENSGT00940000154256.ac.c	ENSGT00440000033468.k.a.b	ENSGT00390000011466.e.a	ENSGT00940000158666.a.a.b.a	ENSGT00940000155606.a.a.a	ENSGT00950000182837.b.a.b.c	ENSGT00940000155687.e.a.e	ENSGT00990000211309	ENSGT00530000063435.a.a.a.e	ENSGT00390000003114.e.a.a.h	ENSGT00940000158414.j.b	ENSGT00940000159780.i	ENSGT00390000010463.a.a.a.b.g	ENSGT00940000155224.c.b.h #22	ENSGT00390000009446.h	ENSGT00940000159006.c.b.c	ENSGT00940000154129.hd.d	ENSGT00940000159439.a.a	ENSGT00530000064137.a.a.b	ENSGT00950000183092.a.d.b.a	ENSGT00950000182883.b.a.b.b.b	ENSGT00940000161040.b.b	ENSGT00720000108866.c	ENSGT00490000043380.b.a	ENSGT00950000182810.A.a.a.b.f	ENSGT00940000167348.a	ENSGT00940000164142.jc.b.a.a	ENSGT00940000156300.j.a	ENSGT00940000155769.`b.a.b
Chinook salmon	MODERN SPECIES	7	mipb (ENSOTSG00005025079)	ENSOTSG00005025081	baz2a (ENSOTSG00005025086)	ptges3b (ENSOTSG00005025088)	naca (ENSOTSG00005025089)	prim1 (ENSOTSG00005025120)	RND1 (ENSOTSG00005025121)	ddx23 (ENSOTSG00005025127)	cacnb3a (ENSOTSG00005025193)	cacnb3a (ENSOTSG00005025195)	G6PD (ENSOTSG00005002088)	GPD1 (ENSOTSG00005004664)	asic1a (ENSOTSG00005004975)	spryd4 (ENSOTSG00005005041)	GLS2 (ENSOTSG00005005042)	col2a1a (ENSOTSG00005005065) #22	aaas (ENSOTSG00005008664)	map3k12 (ENSOTSG00005009185)	pcbp2 (ENSOTSG00005010268)	kif5aa (ENSOTSG00005010625)	ENSOTSG00005011086	stac3 (ENSOTSG00005011087)	NXPH4 (ENSOTSG00005011115)	ENSOTSG00005011118	actr5 (ENSOTSG00005011121)	SLC32A1 (ENSOTSG00005011122)	PRELID3B (ENSOTSG00005011123)	atp5f1e (ENSOTSG00005011126)	ENSOTSG00005011130	ENSOTSG00005011211	chmp4bb (ENSOTSG00005011212)
Coho salmon	MODERN SPECIES	8	ENSOKIG00005014552	baz2a (ENSOKIG00005014583)	ptges3b (ENSOKIG00005014689)	ENSOKIG00005014709	ENSOKIG00005014739	RND1 (ENSOKIG00005014758)	ddx23 (ENSOKIG00005014792)	cacnb3a (ENSOKIG00005015126)	ADCY6 (ENSOKIG00005015223)	ENSOKIG00005016717	G6PD (ENSOKIG00005016816)	GPD1 (ENSOKIG00005018342)	ASIC1 (ENSOKIG00005018419)	spryd4 (ENSOKIG00005018554)	GLS2 (ENSOKIG00005018618)	col2a1a (ENSOKIG00005019327) #22	aaas (ENSOKIG00005020045)	map3k12 (ENSOKIG00005020315)	pcbp2 (ENSOKIG00005021572)	kif5aa (ENSOKIG00005022037)	ENSOKIG00005022274	stac3 (ENSOKIG00005022308)	NXPH4 (ENSOKIG00005022376)	ENSOKIG00005022388	actr5 (ENSOKIG00005022398)	SLC32A1 (ENSOKIG00005022438)	PRELID3B (ENSOKIG00005022453)	atp5f1e (ENSOKIG00005022487)	ENSOKIG00005022509	ENSOKIG00005022555	GNAS (ENSOKIG00005022726)
Salmo	ANCESTRAL SPECIES	39	ENSGT00940000156260.c.b	ENSGT00940000156037.b	ENSGT00940000159490.e	ENSGT00940000154256.ac.c	ENSGT00440000033468.k.a.a.a	ENSGT00390000011466.e.b	ENSGT00940000158666.a.a.b.a	ENSGT00940000155606.a.a.a	ENSGT00950000182837.b.a.b.c	ENSGT00940000155687.e.a.e	ENSGT00530000063435.a.a.a.e	ENSGT00390000003114.e.a.a.h	ENSGT00940000158414.j.b	ENSGT00940000159780.i	ENSGT00390000010463.a.a.a.b.g	ENSGT00940000155224.c.b.h #22	ENSGT00390000009446.h	ENSGT00940000159006.c.b.c	ENSGT00940000154129.hd.d	ENSGT00940000159439.a.a	ENSGT00530000064137.a.a.b	ENSGT00950000183092.a.d.b.a	ENSGT00950000182883.b.a.b.b.b	ENSGT00940000161040.b.b	ENSGT00720000108866.c	ENSGT00490000043380.b.a	ENSGT00950000182810.A.a.a.b.f	ENSGT00940000167348.a	ENSGT00940000164142.jc.b.b	ENSGT00940000156300.j.a	ENSGT00940000155769.`b.a.b
River trout	MODERN SPECIES	20	mipb (ENSSTUG00000031311)	ENSSTUG00000031337	baz2a (ENSSTUG00000031359)	naca (ENSSTUG00000031545)	prim1 (ENSSTUG00000031633)	ENSSTUG00000031732	rnd1b (ENSSTUG00000031736)	ddx23 (ENSSTUG00000031762)	cacnb3a (ENSSTUG00000031964)	ADCY6 (ENSSTUG00000032105)	G6PD (ENSSTUG00000034660)	GPD1 (ENSSTUG00000035070)	asic1a (ENSSTUG00000035133)	spryd4 (ENSSTUG00000003291)	GLS2 (ENSSTUG00000003616)	col2a1a (ENSSTUG00000005939) #22	aaas (ENSSTUG00000006827)	map3k12 (ENSSTUG00000006942)	pcbp2 (ENSSTUG00000008714)	kif5aa (ENSSTUG00000009043)	ENSSTUG00000009628	stac3 (ENSSTUG00000009636)	NXPH4 (ENSSTUG00000009701)	ENSSTUG00000009705	actr5 (ENSSTUG00000009712)	SLC32A1 (ENSSTUG00000009736)	PRELID3B (ENSSTUG00000009750)	atp5f1e (ENSSTUG00000009802)	ENSSTUG00000009809	GNAS (ENSSTUG00000009901)	ENSSTUG00000010517
Atlantic salmon	MODERN SPECIES	6	mipb (ENSSSAG00000064885)	ENSSSAG00000064908	baz2a (ENSSSAG00000064937)	ptges3b (ENSSSAG00000115442)	ENSSSAG00000065014	ENSSSAG00000065101	RND1 (ENSSSAG00000110169)	ddx23 (ENSSSAG00000065451)	cacnb3a (ENSSSAG00000111479)	ADCY6 (ENSSSAG00000066105)	ENSSSAG00000068731	ENSSSAG00000069037	ENSSSAG00000069094	spryd4 (ENSSSAG00000069249)	ENSSSAG00000069297	col2a1a (ENSSSAG00000070635) #22	aaas (ENSSSAG00000076312)	map3k12 (ENSSSAG00000076354)	pcbp2 (ENSSSAG00000076887)	ENSSSAG00000085560	kif5aa (ENSSSAG00000077011)	ENSSSAG00000077594	stac3 (ENSSSAG00000077604)	ENSSSAG00000090848	ENSSSAG00000100098	ENSSSAG00000077638	ENSSSAG00000077648	ENSSSAG00000077667	ENSSSAG00000077670	ENSSSAG00000077676	ENSSSAG00000113681
Northern pike	MODERN SPECIES	11	ENSELUG00000015734	baz2a (ENSELUG00000015700)	ptges3b (ENSELUG00000015624)	ENSELUG00000015528	prim1 (ENSELUG00000015419)	RND1 (ENSELUG00000015397)	ddx23 (ENSELUG00000015358)	cacnb3a (ENSELUG00000015287)	ADCY6 (ENSELUG00000015205)	ENSELUG00000015072	G6PD (ENSELUG00000015002)	gpd1a (ENSELUG00000014932)	asic1a (ENSELUG00000014906)	spryd4 (ENSELUG00000014868)	GLS2 (ENSELUG00000014834)	col2a1a (ENSELUG00000014727) #22	aaas (ENSELUG00000014526)	map3k12 (ENSELUG00000014478)	pcbp2 (ENSELUG00000014427)	kif5aa (ENSELUG00000014352)	ENSELUG00000014204	stac3 (ENSELUG00000014135)	NXPH4 (ENSELUG00000013978)	ENSELUG00000013956	actr5 (ENSELUG00000013918)	SLC32A1 (ENSELUG00000013889)	ENSELUG00000013862	prelid3b (ENSELUG00000027446)	atp5f1e (ENSELUG00000013735)	ENSELUG00000013718	ENSELUG00000026313
Osteoglossiformes	ANCESTRAL SPECIES	377															ENSGT00940000159780	ENSGT00940000155224.c.b #22	ENSGT00390000009446	ENSGT00940000159006.c.b	ENSGT00940000154129.hd	ENSGT00940000159439.a	ENSGT00950000182883.b.a.b.b	ENSGT00940000161040	ENSGT00720000108866	ENSGT01100000263545.a.b.c.b	ENSGT00940000156300.h	ENSGT01090000261049	ENSGT00940000155769.`b.a
P. kingsleyae	MODERN SPECIES	137	DAG1 (ENSPKIG00000005465)	PCBP4 (ENSPKIG00000005487)	manf (ENSPKIG00000005515)	DOCK3 (ENSPKIG00000005560)	DCAF1 (ENSPKIG00000005664)	rpl32 (ENSPKIG00000005757)	grip2a (ENSPKIG00000005794)	slc6a6a (ENSPKIG00000005874)	ABTB1 (ENSPKIG00000005980)	ENSPKIG00000006053	mdh2 (ENSPKIG00000006206)	gpd1a (ENSPKIG00000006222)	SMARCD1 (ENSPKIG00000006252)	asic1a (ENSPKIG00000006274)	spryd4 (ENSPKIG00000006304)	col2a1a (ENSPKIG00000006337) #22	aaas (ENSPKIG00000006426)	map3k12 (ENSPKIG00000006502)	pcbp2 (ENSPKIG00000006570)	kif5aa (ENSPKIG00000006660)	ENSPKIG00000006773	NXPH4 (ENSPKIG00000006789)	ENSPKIG00000006805	actr5 (ENSPKIG00000006836)	ENSPKIG00000006904	ENSPKIG00000006991	ENSPKIG00000007016	ENSPKIG00000007045	ENSPKIG00000007057	GNAS (ENSPKIG00000007077)	ENSPKIG00000007119
Asian bonytongue	MODERN SPECIES		DAG1 (ENSSFOG00015032160)	PCBP4 (ENSSFOG00015029169)	manf (ENSSFOG00015030655)	DOCK3 (ENSSFOG00015012131)	DCAF1 (ENSSFOG00015012254)	rpl32 (ENSSFOG00015028671)	grip2a (ENSSFOG00015012371)	slc6a6a (ENSSFOG00015012499)	ABTB1 (ENSSFOG00015032411)	ENSSFOG00015030782	ENSSFOG00015018330	gpd1a (ENSSFOG00015031260)	SMARCD1 (ENSSFOG00015018240)	asic1a (ENSSFOG00015018213)	spryd4 (ENSSFOG00015026803)	col2a1a (ENSSFOG00015017970) #22	aaas (ENSSFOG00015033042)	map3k12 (ENSSFOG00015017844)	pcbp2 (ENSSFOG00015017796)	kif5aa (ENSSFOG00015017759)	ENSSFOG00015017752	ENSSFOG00015017721	actr5 (ENSSFOG00015017683)	ENSSFOG00015017669	AURKA (ENSSFOG00015017657)	ENSSFOG00015032545	ENSSFOG00015017564	VAPB (ENSSFOG00015017501)	chmp4bb (ENSSFOG00015017482)	eif2s2 (ENSSFOG00015017437)	ywhaba (ENSSFOG00015017410)
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Clupeocephala	ANCESTRAL SPECIES	62	ENSGT00940000167200	ENSGT00940000158212.B	ENSGT00950000183022.b	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000159898	ENSGT00940000162768.B.a	ENSGT00940000154360.A.b.a	ENSGT00950000183184.a.a.a	ENSGT01060000248762	ENSGT00940000165235.a.b	ENSGT00940000160767	ENSGT00940000156186.l.b	ENSGT00940000155224.d #22	ENSGT00940000159964	ENSGT01100000263523.F	ENSGT01100000263523.I.a.a.b	ENSGT01100000263523.J	ENSGT01100000263523.G.a.b.b	ENSGT01100000263523.G.a.a.d	ENSGT01100000263532.C.c.b	ENSGT01100000263523.A.z.d	ENSGT00940000164697.a	ENSGT00730000111148	ENSGT00940000155611	ENSGT00940000153458.B	ENSGT00940000165799	ENSGT00940000155392	ENSGT00940000158443
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Otophysi	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Golden-line barbel	MODERN SPECIES	1634	ENSSGRG00000005343	ENSSGRG00000005339	ENSSGRG00000005338	aldoab (ENSSGRG00000005224)	zgc:123217 (ENSSGRG00000005220)	ppp4cb (ENSSGRG00000005219)	ENSSGRG00000005217	eif3c (ENSSGRG00000004569)	TAOK2 (ENSSGRG00000003390)	ENSSGRG00000003299	ENSSGRG00000003289	TANC2 (ENSSGRG00000003282)	lsm12b (ENSSGRG00000003218)	ENSSGRG00000003210	gngt2b (ENSSGRG00000003208)	ENSSGRG00000002406 #22	rac3b (ENSSGRG00000002263)
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Huchen	DUPLICATION
Huchen	MODERN SPECIES	5929															JAZF1 (ENSHHUG00000004361)	ENSHHUG00000004334 #22	GULP1 (ENSHHUG00000004259)
Huchen	MODERN SPECIES	5652													ENSHHUG00000030273	ENSHHUG00000030262	ENSHHUG00000030234	ENSHHUG00000030181 #22	GULP1 (ENSHHUG00000030156)
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Cod	MODERN SPECIES	17	ENSGMOG00000030974	ENSGMOG00000026798	ENSGMOG00000032936	ENSGMOG00000024530	ENSGMOG00000035295	ENSGMOG00000032492	ENSGMOG00000033123	ENSGMOG00000032010	ENSGMOG00000036354	ENSGMOG00000014408	ENSGMOG00000031995	ENSGMOG00000026661	ENSGMOG00000034319	ENSGMOG00000016522	ENSGMOG00000037134	ENSGMOG00000015313 #22	ENSGMOG00000028392	ENSGMOG00000023713	ENSGMOG00000031250	ENSGMOG00000005513	ENSGMOG00000036365	ENSGMOG00000031404	ENSGMOG00000010973	ENSGMOG00000037040	ENSGMOG00000027747	st6gal2b (ENSGMOG00000028993)	ENSGMOG00000035616	ENSGMOG00000026324	ENSGMOG00000031654	ENSGMOG00000027660	dph3 (ENSGMOG00000000148)
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Tiger tail seahorse	MODERN SPECIES	516	aurka (ENSHCOG00000001197)	wdr82 (ENSHCOG00000001204)	twf2a (ENSHCOG00000001210)	cish (ENSHCOG00000001216)	hemk1 (ENSHCOG00000001225)	nprl2 (ENSHCOG00000001232)	zmynd10 (ENSHCOG00000001244)	RASSF1 (ENSHCOG00000001251)	tusc2a (ENSHCOG00000001259)	HYAL2 (ENSHCOG00000001262)	hyal1 (ENSHCOG00000001265)	npffl (ENSHCOG00000001267)	ENSHCOG00000001271	ENSHCOG00000001290	nckap1l (ENSHCOG00000001334)	ENSHCOG00000001346 #22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Ovalentaria_B	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Cichlidae	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Midas cichlid	MODERN SPECIES	1022												ENSACIG00000024113	eed (ENSACIG00000024110)	pwp2h (ENSACIG00000024109)	ENSACIG00000024107	ENSACIG00000024105 #22	ENSACIG00000024104	ENSACIG00000024101	inpp4ab (ENSACIG00000024097)	ENSACIG00000024094	ENSACIG00000024092	mrps9 (ENSACIG00000024089)	pou3f3b (ENSACIG00000024088)	ENSACIG00000024086	actr3 (ENSACIG00000024085)	LYPD1 (ENSACIG00000024083)	NCKAP5 (ENSACIG00000024082)	gpd1c (ENSACIG00000024080)	OSBPL11 (ENSACIG00000024078)	ENSACIG00000024077	ENSACIG00000024076
Pomacentridae	ANCESTRAL SPECIES	51	ENSGT00940000167830	ENSGT00890000139491	ENSGT00390000011570	ENSGT00940000156322	ENSGT00950000183170.b.b	ENSGT00940000158091	ENSGT00390000001225.s.a	ENSGT00940000156180.f	ENSGT00940000163074	ENSGT00390000005415	ENSGT00950000182905.a.a.a.a.b	ENSGT00940000155400.B	ENSGT00940000155890.a.a	ENSGT00940000158542.b	ENSGT00940000159765	ENSGT00940000155224.d #22	ENSGT00940000155675.p.a	ENSGT00940000156186.l.b	ENSGT00940000165273	ENSGT00940000165235.b	ENSGT00940000177805	ENSGT00940000182362	ENSGT00950000183184.a.a.a	ENSGT00940000154360.A.b.a	ENSGT00940000162768.B.a	ENSGT00940000158212.B	ENSGT00940000167200	ENSGT00940000177886.a	ENSGT00940000156702.a.a.b	ENSGT01040000240451.a.a.c	ENSGT00940000177166
Pomacentridae_A	ANCESTRAL SPECIES	52	ENSGT00940000167830	ENSGT00890000139491	ENSGT00390000011570	ENSGT00940000156322	ENSGT00950000183170.b.b	ENSGT00940000158091	ENSGT00390000001225.s.a	ENSGT00940000156180.f	ENSGT00940000163074	ENSGT00390000005415	ENSGT00950000182905.a.a.a.a.b	ENSGT00940000155400.B	ENSGT00940000155890.a.a	ENSGT00940000158542.b	ENSGT00940000159765	ENSGT00940000155224.d #22	ENSGT00940000155675.p.a	ENSGT00940000156186.l.b	ENSGT00940000165273	ENSGT00940000165235.b	ENSGT00940000177805	ENSGT00940000182362	ENSGT00950000183184.a.a.a	ENSGT00940000154360.A.b.a	ENSGT00940000162768.B.a	ENSGT00940000167200	ENSGT00940000156702.a.a.b	ENSGT01040000240451.a.a.c	ENSGT00940000177166	ENSGT00940000163812	ENSGT00940000169813
Amphiprion	ANCESTRAL SPECIES	52	ENSGT00890000139491	ENSGT00390000011570	ENSGT00940000156322	ENSGT00950000183170.b.b	ENSGT00940000158091	ENSGT00390000001225.s.a	ENSGT00940000156180.f	ENSGT00940000163074	ENSGT00390000005415	ENSGT00950000182905.a.a.a.a.b	ENSGT00940000155400.B	ENSGT00940000182580	ENSGT00940000155890.a.a	ENSGT00940000158542.b	ENSGT00940000159765	ENSGT00940000155224.d #22	ENSGT00940000155675.p.a	ENSGT00940000156186.l.b	ENSGT00940000165273	ENSGT00940000165235.b	ENSGT00950000183184.a.a.a	ENSGT00940000154360.A.b.a	ENSGT00940000162768.B.a	ENSGT00940000167200	ENSGT00940000156702.a.a.b	ENSGT01040000240451.a.a.c	ENSGT00940000177166	ENSGT00940000169813	ENSGT00940000163418.A.a.a	ENSGT00940000163418.A.a.b	ENSGT01050000244848.A.b.a
Orange clownfish	MODERN SPECIES	3	lss (ENSAPEG00000004092)	ENSAPEG00000004174	ybey (ENSAPEG00000004197)	usp37 (ENSAPEG00000004235)	cnot9 (ENSAPEG00000004365)	PLCD4 (ENSAPEG00000004394)	ZNF142 (ENSAPEG00000004469)	bcs1l (ENSAPEG00000004528)	zgc:136333 (ENSAPEG00000004557)	TNS1 (ENSAPEG00000004583)	ENSAPEG00000004603	ENSAPEG00000004619	igfbp5b (ENSAPEG00000004632)	igfbp2b (ENSAPEG00000004641)	slc4a3 (ENSAPEG00000004673)	ENSAPEG00000004861 #22	gulp1a (ENSAPEG00000004993)	ENSAPEG00000005066	ENSAPEG00000005085	ENSAPEG00000005152	lrrc3 (ENSAPEG00000005185)	pcbp3 (ENSAPEG00000005209)	ENSAPEG00000005273	ENSAPEG00000005286	ENSAPEG00000005325	CTDSP1 (ENSAPEG00000005534)	ENSAPEG00000005563	ENSAPEG00000005590	ENSAPEG00000005611	ENSAPEG00000005635	ENSAPEG00000005676
Atherinomorphae	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Cyprinodontiformes	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Aplocheiloidei	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Turquoise killifish	MODERN SPECIES	1623	DBNL (ENSNFUG00015006118)	ENSNFUG00015006108	hpse (ENSNFUG00015006098)	ppp3ccb (ENSNFUG00015005852)	dmtn (ENSNFUG00015005817)	PBDC1 (ENSNFUG00015005809)	ENSNFUG00015005805	xpo7 (ENSNFUG00015005734)	ENSNFUG00015005686	ENSNFUG00015005665	ENSNFUG00015005659	DHRSX (ENSNFUG00015005653)	ENSNFUG00015005649	asmt (ENSNFUG00015005631)	GULP1 (ENSNFUG00015005561)	COL5A2 (ENSNFUG00015005052) #22	ENSNFUG00015005006	ENSNFUG00015005002	ENSNFUG00015004998	gtf2f2b (ENSNFUG00015004982)	KCTD4 (ENSNFUG00015004978)	tsc22d1 (ENSNFUG00015004972)	zgc:65895 (ENSNFUG00015004966)	SERP2 (ENSNFUG00015004953)	ALS2 (ENSNFUG00015004847)	fzd7b (ENSNFUG00015004789)	ENSNFUG00015004783	ENSNFUG00015023961	ENSNFUG00015023958	ENSNFUG00015023955	ENSNFUG00015023953
Oryzias	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Oryzias_b	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Javanese ricefish	MODERN SPECIES	13	ENSOJAG00000021686	MCM3AP (ENSOJAG00000021610)	ybey (ENSOJAG00000021589)	usp37 (ENSOJAG00000021547)	cnot9 (ENSOJAG00000021505)	PLCD4 (ENSOJAG00000021256)	ZNF142 (ENSOJAG00000021212)	bcs1l (ENSOJAG00000021174)	zgc:136333 (ENSOJAG00000021136)	ENSOJAG00000021120	TNS1 (ENSOJAG00000020938)	igfbp5b (ENSOJAG00000020921)	igfbp2b (ENSOJAG00000020918)	ENSOJAG00000020910	slc4a3 (ENSOJAG00000019855)	ENSOJAG00000019263 #22	gulp1a (ENSOJAG00000019141)	ENSOJAG00000019121	ENSOJAG00000018181	ENSOJAG00000018059	lrrc3 (ENSOJAG00000018052)	pcbp3 (ENSOJAG00000018019)	ENSOJAG00000017993	ENSOJAG00000017975	ENSOJAG00000017962	ENSOJAG00000017929	ENSOJAG00000017827	ENSOJAG00000017465	ENSOJAG00000017457	nabp1a (ENSOJAG00000017439)	cavin2a (ENSOJAG00000017431)
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Percomorphaceae_D	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Carangaria	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Carangaria_A	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Seriola	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Yellowtail amberjack	MODERN SPECIES	2955											xylt1 (ENSSLDG00000012358)	ENSSLDG00000012388	nags (ENSSLDG00000012402)	ENSSLDG00000012421	coa3b (ENSSLDG00000012428)	ENSSLDG00000012463 #22	ENSSLDG00000012554	ENSSLDG00000012581	ENSSLDG00000012593	pex12 (ENSSLDG00000012631)	ENSSLDG00000012712	HDAC5 (ENSSLDG00000012743)	cyb561 (ENSSLDG00000012777)	TANC2 (ENSSLDG00000012929)	RARA (ENSSLDG00000013339)	ENSSLDG00000013369	ENSSLDG00000013393	ENSSLDG00000013406	pyya (ENSSLDG00000013426)	mpp2a (ENSSLDG00000013449)	ENSSLDG00000013486
Eupercaria	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Eupecaria_A	ANCESTRAL SPECIES																	ENSGT00940000155224.d #22
Ballan wrasse	MODERN SPECIES	65	abi2b (ENSLBEG00000005666)	ENSLBEG00000005744	ENSLBEG00000005806	ENSLBEG00000005825	ENSLBEG00000005866	ENSLBEG00000005944	nr4a2b (ENSLBEG00000005973)	gpd2 (ENSLBEG00000006019)	ENSLBEG00000006143	ENSLBEG00000006201	LRRC3 (ENSLBEG00000006245)	ATP7B (ENSLBEG00000006266)	eed (ENSLBEG00000006356)	pwp2h (ENSLBEG00000006388)	ENSLBEG00000006488	ENSLBEG00000006549 #22	ENSLBEG00000006775	zswim2 (ENSLBEG00000006844)	FAM171B (ENSLBEG00000006878)	SLAIN1 (ENSLBEG00000006927)	mrps9 (ENSLBEG00000006954)	ENSLBEG00000006977	pou3f3b (ENSLBEG00000007009)	ENSLBEG00000007033	actr3 (ENSLBEG00000007072)	LYPD1 (ENSLBEG00000007128)	NCKAP5 (ENSLBEG00000007143)	gpd1c (ENSLBEG00000007203)	OSBPL11 (ENSLBEG00000007267)	ENSLBEG00000007343	ENSLBEG00000007366