Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000156111 #7	ENSGT00940000158282 #8	ENSGT00940000155716.h #9	ENSGT00940000155716.g #10	ENSGT00940000153997.b.a.a #11	ENSGT00940000155189 #12	ENSGT01020000230394.e.b.a #13	ENSGT00940000160900 #14	ENSGT01030000234549.a.a.a.a.a.b.b #15	ENSGT00390000001016.b #16	ENSGT00530000063687.a #17	ENSGT00390000014874 #18	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266 #25	ENSGT00940000158273 #26	ENSGT00940000159798 #27	ENSGT00940000156062 #29	ENSGT00390000000616 #30	ENSGT00390000003282.B #31	ENSGT00390000017509 #32	ENSGT00940000160690 #33	ENSGT00940000156027 #34	ENSGT00940000157569 #35	ENSGT00940000161461 #36	ENSGT00940000153393.B #37	ENSGT00390000004064
Ryukyu mouse	MODERN SPECIES	15	Alox5 (MGP_CAROLIEiJ_G0028770) #7	Marchf8 (MGP_CAROLIEiJ_G0028769) #8	MGP_CAROLIEiJ_G0028768 #9	Zfand4 (MGP_CAROLIEiJ_G0028767) #10	Washc2 (MGP_CAROLIEiJ_G0028766) #11	Tmcc1 (MGP_CAROLIEiJ_G0028765) #12	Plxnd1 (MGP_CAROLIEiJ_G0028764) #13	H1f8 (MGP_CAROLIEiJ_G0028763) #14	Rho (MGP_CAROLIEiJ_G0028762) #15	Ift122 (MGP_CAROLIEiJ_G0028761) #16	Mbd4 (MGP_CAROLIEiJ_G0028760) #17	Efcab12 (MGP_CAROLIEiJ_G0028759) #18	MGP_CAROLIEiJ_G0028758 #19	Cand2 (MGP_CAROLIEiJ_G0028757) #20	MGP_CAROLIEiJ_G0028756 #21	Raf1 (MGP_CAROLIEiJ_G0028755) #22	Mkrn2 (MGP_CAROLIEiJ_G0028754) #23	Mkrn2os (MGP_CAROLIEiJ_G0028753) #24	Tsen2 (MGP_CAROLIEiJ_G0028752) #25	Pparg (MGP_CAROLIEiJ_G0028751) #26	Timp4 (MGP_CAROLIEiJ_G0028750) #27	MGP_CAROLIEiJ_G0028749 #28	Syn2 (MGP_CAROLIEiJ_G0028748) #29	Tamm41 (MGP_CAROLIEiJ_G0028747) #30	Vgll4 (MGP_CAROLIEiJ_G0028746) #31	Atg7 (MGP_CAROLIEiJ_G0028745) #32	Hrh1 (MGP_CAROLIEiJ_G0028744) #33	Slc6a1 (MGP_CAROLIEiJ_G0028743) #34	Slc6a11 (MGP_CAROLIEiJ_G0028742) #35	Atp2b2 (MGP_CAROLIEiJ_G0028741) #36	Sec13 (MGP_CAROLIEiJ_G0028740) #37
Mus_B	ANCESTRAL SPECIES	15	ENSGT00940000158282 #8	ENSGT00940000155716.h #9	ENSGT00940000155716.g #10	ENSGT00940000153997.b.a.a #11	ENSGT00940000155189 #12	ENSGT01020000230394.e.b.a #13	ENSGT00940000160900 #14	ENSGT01030000234549.a.a.a.a.a.b.b #15	ENSGT00390000001016.b #16	ENSGT00530000063687.a #17	ENSGT00390000014874 #18	ENSGT00940000153973.c.a.b.b ##19	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266 #25	ENSGT00940000158273 #26	ENSGT00940000159798 #27	ENSGT00940000156062 #29	ENSGT00390000000616 #30	ENSGT00390000003282.B #31	ENSGT00390000017509 #32	ENSGT00940000160690 #33	ENSGT00940000156027 #34	ENSGT00940000157569 #35	ENSGT00940000161461 #36	ENSGT00940000153393.B #37	ENSGT00390000004064
Mouse	MODERN SPECIES	15	Or13a1 (ENSMUSG00000053391)	Alox5 (ENSMUSG00000025701) #7	Marchf8 (ENSMUSG00000025702) #8	Zfand4 (ENSMUSG00000042213) #10	Washc2 (ENSMUSG00000024104) #11	Tmcc1 (ENSMUSG00000030126) #12	Plxnd1 (ENSMUSG00000030123) #13	H1f8 (ENSMUSG00000042279) #14	Rho (ENSMUSG00000030324) #15	Ift122 (ENSMUSG00000030323) #16	Mbd4 (ENSMUSG00000030322) #17	Efcab12 (ENSMUSG00000030321) #18	Rpl32 (ENSMUSG00000057841) ##19	Cand2 (ENSMUSG00000030319) #20	Tmem40 (ENSMUSG00000059900) #21	Raf1 (ENSMUSG00000000441) #22	Mkrn2 (ENSMUSG00000000439) #23	Mkrn2os (ENSMUSG00000068011) #24	Tsen2 (ENSMUSG00000042389) #25	Pparg (ENSMUSG00000000440) #26	Timp4 (ENSMUSG00000030317) #27	Syn2 (ENSMUSG00000009394) #29	Tamm41 (ENSMUSG00000030316) #30	Vgll4 (ENSMUSG00000030315) #31	Atg7 (ENSMUSG00000030314) #32	Hrh1 (ENSMUSG00000053004) #33	Slc6a1 (ENSMUSG00000030310) #34	Slc6a11 (ENSMUSG00000030307) #35	Atp2b2 (ENSMUSG00000030302) #36	Sec13 (ENSMUSG00000030298) #37	Ghrl (ENSMUSG00000064177)
Mus_C	ANCESTRAL SPECIES	18	ENSGT00940000156111 #7	ENSGT00940000158282 #8	ENSGT00940000155716.h #9	ENSGT00940000155716.g #10	ENSGT00940000153997.b.a.a #11	ENSGT00940000155189 #12	ENSGT01020000230394.e.b.a #13	ENSGT00940000160900 #14	ENSGT01030000234549.a.a.a.a.a.b.b #15	ENSGT00390000001016.b #16	ENSGT00530000063687.a #17	ENSGT00390000014874 #18	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266 #25	ENSGT00940000158273 #26	ENSGT00940000159798 #27	ENSGT00940000156062 #29	ENSGT00390000000616 #30	ENSGT00390000003282.B #31	ENSGT00390000017509 #32	ENSGT00940000160690 #33	ENSGT00940000156027 #34	ENSGT00940000157569 #35	ENSGT00940000161461 #36	ENSGT00940000153393.B #37	ENSGT00390000004064
Steppe mouse	MODERN SPECIES	3022	Marchf8 (ENSMSIG00000002032) #8	Zfand4 (ENSMSIG00000001904) #10	Washc2 (ENSMSIG00000001796) #11	ENSMSIG00000001776	Tmcc1 (ENSMSIG00000001659) #12	ENSMSIG00000001422 #13	H1f8 (ENSMSIG00000001367) #14	ENSMSIG00000001359	Rho (ENSMSIG00000001309) #15	Ift122 (ENSMSIG00000000881) #16	Mbd4 (ENSMSIG00000000793) #17	Efcab12 (ENSMSIG00000000741) #18	Rpl32 (ENSMSIG00000000692) ##19	Cand2 (ENSMSIG00000000651) #20	Tmem40 (ENSMSIG00000000359) #21	Raf1 (ENSMSIG00000000188) #22	ENSMSIG00000031938 #23	Mkrn2os (ENSMSIG00000031937) #24	Tsen2 (ENSMSIG00000031936) #25	Pparg (ENSMSIG00000031935) #26	Timp4 (ENSMSIG00000031934) #27	ENSMSIG00000031933	Syn2 (ENSMSIG00000031932) #29	ENSMSIG00000031931 #30	ENSMSIG00000031930 #31	ENSMSIG00000031929	Atg7 (ENSMSIG00000031927) #32
spretus	MODERN SPECIES	15	Alox5 (MGP_SPRETEiJ_G0029798) #7	Marchf8 (MGP_SPRETEiJ_G0029797) #8	MGP_SPRETEiJ_G0029796 #9	Zfand4 (MGP_SPRETEiJ_G0029795) #10	Washc2 (MGP_SPRETEiJ_G0029794) #11	MGP_SPRETEiJ_G0029793 #12	Plxnd1 (MGP_SPRETEiJ_G0029792) #13	H1f8 (MGP_SPRETEiJ_G0029791) #14	Rho (MGP_SPRETEiJ_G0029790) #15	Ift122 (MGP_SPRETEiJ_G0029789) #16	Mbd4 (MGP_SPRETEiJ_G0029788) #17	Efcab12 (MGP_SPRETEiJ_G0029787) #18	MGP_SPRETEiJ_G0029786 #19	Cand2 (MGP_SPRETEiJ_G0029785) #20	Tmem40 (MGP_SPRETEiJ_G0029784) #21	Raf1 (MGP_SPRETEiJ_G0029783) #22	Mkrn2 (MGP_SPRETEiJ_G0029782) #23	Mkrn2os (MGP_SPRETEiJ_G0029781) #24	Tsen2 (MGP_SPRETEiJ_G0029780) #25	Pparg (MGP_SPRETEiJ_G0029779) #26	Timp4 (MGP_SPRETEiJ_G0029778) #27	MGP_SPRETEiJ_G0029777	Syn2 (MGP_SPRETEiJ_G0029776) #29	Tamm41 (MGP_SPRETEiJ_G0029775) #30	Vgll4 (MGP_SPRETEiJ_G0029774) #31	Atg7 (MGP_SPRETEiJ_G0029773) #32	Hrh1 (MGP_SPRETEiJ_G0029772) #33	Slc6a1 (MGP_SPRETEiJ_G0029771) #34	Slc6a11 (MGP_SPRETEiJ_G0029770) #35	Atp2b2 (MGP_SPRETEiJ_G0029769) #36	Sec13 (MGP_SPRETEiJ_G0029768) #37